Query 001080
Match_columns 1162
No_of_seqs 573 out of 2033
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 15:16:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001080.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001080hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2283 Clathrin coat dissocia 100.0 4.2E-54 9.1E-59 499.3 21.7 303 4-338 3-317 (434)
2 KOG1924 RhoA GTPase effector D 100.0 2.9E-36 6.2E-41 350.8 21.9 201 955-1161 608-813 (1102)
3 smart00498 FH2 Formin Homology 100.0 4.6E-31 9.9E-36 313.3 16.3 190 966-1161 3-195 (432)
4 PF02181 FH2: Formin Homology 100.0 2.1E-30 4.5E-35 302.5 10.6 191 964-1161 2-193 (370)
5 PF10409 PTEN_C2: C2 domain of 99.9 4.1E-27 8.8E-32 236.4 14.8 130 198-337 2-134 (134)
6 KOG1923 Rac1 GTPase effector F 99.9 2.8E-22 6E-27 237.0 15.7 195 962-1161 360-559 (830)
7 KOG1925 Rac1 GTPase effector F 99.8 2E-20 4.4E-25 210.6 14.7 182 966-1161 277-469 (817)
8 KOG1922 Rho GTPase effector BN 99.8 2.4E-17 5.1E-22 211.5 22.0 188 967-1161 390-584 (833)
9 PTZ00242 protein tyrosine phos 99.7 4.6E-17 1E-21 169.5 17.5 152 12-192 7-160 (166)
10 KOG1720 Protein tyrosine phosp 99.7 3.3E-16 7.1E-21 162.9 14.2 164 4-189 34-207 (225)
11 PTZ00393 protein tyrosine phos 99.6 4.7E-15 1E-19 159.8 15.5 142 18-191 89-230 (241)
12 PF05706 CDKN3: Cyclin-depende 99.4 5.5E-13 1.2E-17 136.4 9.2 122 23-155 42-168 (168)
13 smart00195 DSPc Dual specifici 99.3 1.8E-11 3.8E-16 123.4 15.1 136 17-188 2-137 (138)
14 PF00782 DSPc: Dual specificit 99.2 3.6E-11 7.9E-16 120.1 10.1 122 48-188 11-132 (133)
15 cd00127 DSPc Dual specificity 99.2 2E-10 4.4E-15 115.3 13.9 137 16-186 2-138 (139)
16 COG2453 CDC14 Predicted protei 99.2 1.1E-10 2.5E-15 123.4 11.9 98 79-189 69-166 (180)
17 KOG1719 Dual specificity phosp 99.2 1.2E-10 2.6E-15 116.1 10.7 115 62-190 55-170 (183)
18 PRK12361 hypothetical protein; 99.2 4.1E-10 9E-15 138.6 17.2 142 15-188 94-235 (547)
19 KOG2836 Protein tyrosine phosp 99.1 3.6E-09 7.7E-14 103.1 15.4 148 10-187 6-153 (173)
20 PHA03247 large tegument protei 98.9 7.1E-06 1.5E-10 109.1 42.7 10 985-994 3024-3033(3151)
21 smart00012 PTPc_DSPc Protein t 98.9 2E-08 4.3E-13 95.2 12.0 89 88-186 8-102 (105)
22 smart00404 PTPc_motif Protein 98.9 2E-08 4.3E-13 95.2 12.0 89 88-186 8-102 (105)
23 PHA03247 large tegument protei 98.9 2.5E-06 5.4E-11 113.2 34.6 10 272-281 2131-2140(3151)
24 KOG1924 RhoA GTPase effector D 98.5 2.1E-06 4.5E-11 103.3 16.8 10 517-526 426-436 (1102)
25 cd00047 PTPc Protein tyrosine 98.5 5.5E-07 1.2E-11 98.8 10.2 92 85-186 132-228 (231)
26 PRK15375 pathogenicity island 98.5 9.2E-07 2E-11 104.4 12.1 96 83-187 423-526 (535)
27 smart00194 PTPc Protein tyrosi 98.3 2.8E-06 6E-11 94.9 10.6 87 89-186 165-255 (258)
28 PF03162 Y_phosphatase2: Tyros 98.2 5.9E-06 1.3E-10 86.4 9.8 122 48-188 25-148 (164)
29 PF00102 Y_phosphatase: Protei 98.1 7.5E-06 1.6E-10 89.2 7.8 92 84-186 136-232 (235)
30 KOG0792 Protein tyrosine phosp 98.0 2.1E-05 4.6E-10 98.5 10.5 88 89-187 1035-1126(1144)
31 KOG2386 mRNA capping enzyme, g 97.9 2.4E-05 5.1E-10 90.8 8.6 142 21-168 24-171 (393)
32 KOG1716 Dual specificity phosp 97.8 0.00049 1.1E-08 78.4 16.4 122 14-162 73-196 (285)
33 KOG0790 Protein tyrosine phosp 97.8 2.5E-05 5.4E-10 89.7 4.9 89 89-187 421-517 (600)
34 KOG3671 Actin regulatory prote 97.7 0.00061 1.3E-08 79.7 15.9 29 966-994 474-503 (569)
35 TIGR01244 conserved hypothetic 97.7 0.00039 8.5E-09 70.4 11.8 115 15-158 1-121 (135)
36 PHA02742 protein tyrosine phos 97.7 0.00021 4.5E-09 82.1 10.8 88 89-186 190-291 (303)
37 PHA02747 protein tyrosine phos 97.7 0.00021 4.5E-09 82.4 10.8 85 89-183 191-288 (312)
38 PHA02740 protein tyrosine phos 97.6 0.00029 6.3E-09 80.6 10.8 88 89-186 185-283 (298)
39 PLN02727 NAD kinase 97.6 0.00016 3.4E-09 91.1 8.4 99 38-147 262-368 (986)
40 KOG3671 Actin regulatory prote 97.5 0.0021 4.6E-08 75.3 16.0 9 969-977 504-512 (569)
41 PHA02746 protein tyrosine phos 97.5 0.00047 1E-08 79.9 10.7 88 89-186 209-309 (323)
42 PHA02738 hypothetical protein; 97.4 0.00074 1.6E-08 78.2 10.7 89 89-187 186-290 (320)
43 KOG1718 Dual specificity phosp 97.2 0.0035 7.6E-08 64.5 11.9 127 6-161 7-134 (198)
44 KOG1717 Dual specificity phosp 97.2 0.0016 3.4E-08 71.2 9.7 94 54-160 195-290 (343)
45 COG5599 PTP2 Protein tyrosine 97.2 0.00093 2E-08 73.2 7.6 87 89-189 192-292 (302)
46 PF14566 PTPlike_phytase: Inos 97.2 0.00036 7.9E-09 71.9 4.4 60 79-143 89-148 (149)
47 KOG0791 Protein tyrosine phosp 97.2 0.0009 2E-08 76.4 7.8 102 83-192 253-356 (374)
48 PF13350 Y_phosphatase3: Tyros 96.6 0.0046 1E-07 64.6 6.7 94 48-147 35-151 (164)
49 KOG0789 Protein tyrosine phosp 96.1 0.017 3.7E-07 68.9 9.3 86 89-186 271-362 (415)
50 KOG1572 Predicted protein tyro 96.0 0.055 1.2E-06 59.0 11.5 95 48-148 78-176 (249)
51 PF04273 DUF442: Putative phos 95.9 0.021 4.6E-07 55.9 7.0 96 15-137 1-102 (110)
52 COG2365 Protein tyrosine/serin 95.6 0.023 5.1E-07 63.6 6.8 36 114-150 131-166 (249)
53 KOG0793 Protein tyrosine phosp 95.4 0.019 4.1E-07 69.8 5.2 88 86-184 895-988 (1004)
54 COG5350 Predicted protein tyro 95.2 0.19 4.1E-06 51.4 10.8 106 47-158 23-131 (172)
55 KOG4228 Protein tyrosine phosp 94.8 0.036 7.8E-07 71.3 5.8 111 59-187 967-1081(1087)
56 PF14671 DSPn: Dual specificit 94.3 0.086 1.9E-06 53.9 6.0 65 92-159 40-108 (141)
57 KOG4228 Protein tyrosine phosp 93.7 0.049 1.1E-06 70.2 3.6 53 84-139 696-749 (1087)
58 KOG1830 Wiskott Aldrich syndro 91.0 4.7 0.0001 47.4 14.6 8 1052-1059 490-497 (518)
59 PRK00142 putative rhodanese-re 80.5 4.3 9.2E-05 47.2 7.4 105 17-146 89-195 (314)
60 PRK01415 hypothetical protein; 79.2 7.6 0.00017 43.6 8.6 105 17-146 90-195 (247)
61 TIGR02764 spore_ybaN_pdaB poly 77.9 4.8 0.0001 42.9 6.4 109 3-126 50-159 (191)
62 cd08678 C2_C21orf25-like C2 do 77.2 23 0.0005 35.1 10.6 118 203-339 2-123 (126)
63 cd04042 C2A_MCTP_PRT C2 domain 76.3 30 0.00065 33.9 11.1 88 202-304 2-90 (121)
64 cd01518 RHOD_YceA Member of th 75.7 11 0.00024 35.7 7.5 79 45-146 7-85 (101)
65 cd08682 C2_Rab11-FIP_classI C2 74.6 24 0.00053 34.8 10.0 83 207-304 6-94 (126)
66 KOG1923 Rac1 GTPase effector F 73.9 12 0.00027 47.2 9.0 11 307-317 114-124 (830)
67 PRK05320 rhodanese superfamily 72.6 8.6 0.00019 43.5 6.9 85 43-146 113-199 (257)
68 COG1054 Predicted sulfurtransf 72.6 16 0.00035 41.8 8.9 103 19-147 92-197 (308)
69 cd04036 C2_cPLA2 C2 domain pre 71.7 36 0.00078 33.2 10.3 91 203-305 3-93 (119)
70 cd08375 C2_Intersectin C2 doma 69.2 34 0.00073 34.7 9.7 89 201-303 16-104 (136)
71 TIGR02873 spore_ylxY probable 66.3 15 0.00032 41.9 7.1 110 3-127 129-239 (268)
72 PF00168 C2: C2 domain; Inter 63.9 63 0.0014 28.5 9.5 82 202-295 1-83 (85)
73 cd04022 C2A_MCTP_PRT_plant C2 63.9 67 0.0014 31.7 10.5 89 202-304 2-94 (127)
74 cd08393 C2A_SLP-1_2 C2 domain 63.5 43 0.00093 33.2 9.0 97 198-304 13-113 (125)
75 cd08685 C2_RGS-like C2 domain 63.0 49 0.0011 32.7 9.3 94 200-303 12-107 (119)
76 cd08387 C2A_Synaptotagmin-8 C2 62.6 54 0.0012 32.1 9.6 94 199-304 15-111 (124)
77 cd08410 C2B_Synaptotagmin-17 C 62.3 34 0.00075 34.4 8.2 98 197-304 11-111 (135)
78 cd08384 C2B_Rabphilin_Doc2 C2 62.3 24 0.00052 35.2 7.0 94 198-301 11-107 (133)
79 cd04037 C2E_Ferlin C2 domain f 60.9 38 0.00083 33.5 8.2 86 203-300 3-88 (124)
80 cd08402 C2B_Synaptotagmin-1 C2 60.0 34 0.00075 34.2 7.7 96 195-300 10-108 (136)
81 cd01533 4RHOD_Repeat_2 Member 59.7 40 0.00086 32.3 7.9 78 43-146 13-90 (109)
82 cd08403 C2B_Synaptotagmin-3-5- 58.2 67 0.0015 32.0 9.5 94 198-301 12-108 (134)
83 cd04050 C2B_Synaptotagmin-like 57.7 78 0.0017 30.2 9.4 84 202-303 2-86 (105)
84 cd08376 C2B_MCTP_PRT C2 domain 57.1 90 0.0019 30.1 9.9 87 203-304 3-90 (116)
85 cd04040 C2D_Tricalbin-like C2 55.5 77 0.0017 30.4 9.1 83 207-303 6-89 (115)
86 cd01528 RHOD_2 Member of the R 55.3 45 0.00098 31.4 7.3 77 45-145 5-81 (101)
87 cd00276 C2B_Synaptotagmin C2 d 54.4 55 0.0012 32.2 8.1 94 198-301 12-108 (134)
88 cd08681 C2_fungal_Inn1p-like C 53.0 60 0.0013 31.4 8.0 87 202-302 3-89 (118)
89 cd08386 C2A_Synaptotagmin-7 C2 52.5 32 0.0007 33.7 6.0 34 197-230 13-46 (125)
90 cd08390 C2A_Synaptotagmin-15-1 52.2 46 0.001 32.5 7.0 92 198-301 12-107 (123)
91 TIGR02884 spore_pdaA delta-lac 52.1 48 0.001 36.5 7.9 111 3-127 81-195 (224)
92 cd04048 C2A_Copine C2 domain f 51.2 68 0.0015 31.4 8.0 92 206-304 6-101 (120)
93 cd04025 C2B_RasA1_RasA4 C2 dom 51.1 1.3E+02 0.0027 29.5 10.0 86 202-302 2-88 (123)
94 KOG4025 Putative apoptosis rel 51.0 53 0.0012 34.4 7.2 88 1064-1160 54-144 (207)
95 cd04041 C2A_fungal C2 domain f 50.9 77 0.0017 30.6 8.3 87 202-300 3-94 (111)
96 cd04030 C2C_KIAA1228 C2 domain 50.5 1E+02 0.0022 30.2 9.2 95 197-300 13-111 (127)
97 cd08692 C2B_Tac2-N C2 domain s 50.5 77 0.0017 32.4 8.4 97 194-303 8-110 (135)
98 KOG0132 RNA polymerase II C-te 49.9 7.2E+02 0.016 32.5 19.0 16 38-53 38-53 (894)
99 cd08404 C2B_Synaptotagmin-4 C2 49.2 72 0.0016 32.0 8.0 93 199-301 14-109 (136)
100 cd04009 C2B_Munc13-like C2 dom 49.0 58 0.0013 32.6 7.3 94 200-301 16-114 (133)
101 cd01531 Acr2p Eukaryotic arsen 48.7 1.2E+02 0.0026 29.3 9.2 16 117-132 60-75 (113)
102 PF11593 Med3: Mediator comple 48.1 62 0.0013 38.1 8.0 45 1106-1156 58-102 (379)
103 cd08385 C2A_Synaptotagmin-1-5- 46.9 1.5E+02 0.0032 29.0 9.8 94 198-303 14-110 (124)
104 cd08400 C2_Ras_p21A1 C2 domain 46.2 3.1E+02 0.0067 27.2 12.2 87 201-304 5-91 (126)
105 cd08401 C2A_RasA2_RasA3 C2 dom 46.1 1.3E+02 0.0028 29.7 9.1 88 202-304 2-91 (121)
106 cd08382 C2_Smurf-like C2 domai 46.0 1.2E+02 0.0027 29.8 9.0 86 202-302 2-89 (123)
107 cd08675 C2B_RasGAP C2 domain s 45.6 93 0.002 31.5 8.2 23 207-230 6-28 (137)
108 cd01530 Cdc25 Cdc25 phosphatas 45.5 83 0.0018 31.2 7.7 27 116-144 65-91 (121)
109 PF14968 CCDC84: Coiled coil p 45.1 8.2 0.00018 45.1 0.5 108 1046-1153 19-150 (336)
110 cd04019 C2C_MCTP_PRT_plant C2 45.0 3.7E+02 0.008 27.7 12.8 120 202-337 2-133 (150)
111 cd08373 C2A_Ferlin C2 domain f 44.6 2.4E+02 0.0052 27.7 10.9 114 208-341 4-121 (127)
112 cd08677 C2A_Synaptotagmin-13 C 44.1 1.5E+02 0.0032 29.7 9.0 92 197-301 11-104 (118)
113 cd04054 C2A_Rasal1_RasA4 C2 do 44.1 1.7E+02 0.0037 28.7 9.6 85 202-301 2-87 (121)
114 cd08408 C2B_Synaptotagmin-14_1 44.0 83 0.0018 32.0 7.6 94 197-301 12-110 (138)
115 cd08688 C2_KIAA0528-like C2 do 43.9 1.6E+02 0.0034 28.4 9.2 88 203-304 2-93 (110)
116 cd08407 C2B_Synaptotagmin-13 C 43.5 1E+02 0.0023 31.5 8.2 94 197-301 12-111 (138)
117 cd08406 C2B_Synaptotagmin-12 C 43.4 58 0.0013 33.1 6.3 95 195-301 10-109 (136)
118 cd08521 C2A_SLP C2 domain firs 43.4 1.9E+02 0.0042 28.0 9.9 32 199-230 13-45 (123)
119 cd04031 C2A_RIM1alpha C2 domai 43.3 81 0.0018 30.7 7.2 33 198-230 14-46 (125)
120 cd04029 C2A_SLP-4_5 C2 domain 42.7 1.8E+02 0.0039 28.9 9.6 97 198-304 13-113 (125)
121 PF10354 DUF2431: Domain of un 42.5 55 0.0012 34.6 6.1 100 20-128 21-128 (166)
122 PF08114 PMP1_2: ATPase proteo 42.5 7 0.00015 31.4 -0.4 29 117-148 6-34 (43)
123 cd08405 C2B_Synaptotagmin-7 C2 42.5 94 0.002 31.1 7.7 95 198-302 13-110 (136)
124 cd08392 C2A_SLP-3 C2 domain fi 41.9 1.6E+02 0.0034 29.6 9.1 95 198-302 13-111 (128)
125 cd08377 C2C_MCTP_PRT C2 domain 41.5 2E+02 0.0044 27.6 9.7 88 202-305 3-91 (119)
126 cd01534 4RHOD_Repeat_3 Member 41.4 1.4E+02 0.003 27.8 8.2 77 45-146 4-80 (95)
127 cd04044 C2A_Tricalbin-like C2 41.4 2E+02 0.0042 27.9 9.6 89 202-304 4-94 (124)
128 cd08388 C2A_Synaptotagmin-4-11 41.3 1.3E+02 0.0029 29.9 8.5 33 198-230 14-47 (128)
129 TIGR01884 cas_HTH CRISPR locus 40.4 1.4E+02 0.003 32.4 9.1 42 104-146 72-115 (203)
130 COG3453 Uncharacterized protei 40.2 3.1E+02 0.0067 27.8 10.3 92 15-132 2-99 (130)
131 cd04038 C2_ArfGAP C2 domain pr 39.9 2.3E+02 0.005 29.2 10.1 84 202-302 4-88 (145)
132 PF04179 Init_tRNA_PT: Initiat 39.3 43 0.00093 41.0 5.3 40 101-140 358-397 (451)
133 cd04024 C2A_Synaptotagmin-like 38.5 2.2E+02 0.0048 27.7 9.5 83 202-299 3-88 (128)
134 cd01448 TST_Repeat_1 Thiosulfa 38.3 53 0.0012 32.0 5.0 29 116-146 76-104 (122)
135 cd01443 Cdc25_Acr2p Cdc25 enzy 38.0 67 0.0014 31.1 5.6 33 100-132 47-79 (113)
136 cd04039 C2_PSD C2 domain prese 37.7 2.5E+02 0.0055 27.1 9.5 86 202-302 3-94 (108)
137 cd08409 C2B_Synaptotagmin-15 C 37.2 1.1E+02 0.0024 30.9 7.2 92 197-301 12-108 (137)
138 cd04045 C2C_Tricalbin-like C2 37.2 2.3E+02 0.0049 27.9 9.3 85 202-301 3-88 (120)
139 cd08383 C2A_RasGAP C2 domain ( 37.0 3.8E+02 0.0082 25.6 10.8 83 204-303 4-88 (117)
140 cd04260 AAK_AKi-DapG-BS AAK_AK 36.8 1.6E+02 0.0034 32.9 9.0 37 78-125 3-39 (244)
141 cd04020 C2B_SLP_1-2-3-4 C2 dom 36.7 1.6E+02 0.0035 30.8 8.5 95 200-304 27-125 (162)
142 cd00275 C2_PLC_like C2 domain 36.7 2.9E+02 0.0064 26.8 10.1 96 202-307 4-103 (128)
143 cd04043 C2_Munc13_fungal C2 do 36.0 3.3E+02 0.0071 26.5 10.3 86 202-299 3-89 (126)
144 PF06602 Myotub-related: Myotu 35.6 1.1E+02 0.0024 36.2 8.0 22 117-139 229-250 (353)
145 cd04032 C2_Perforin C2 domain 35.1 2E+02 0.0044 28.9 8.6 77 211-303 39-117 (127)
146 cd08381 C2B_PI3K_class_II C2 d 34.9 2.7E+02 0.006 27.4 9.5 94 200-304 13-110 (122)
147 cd08680 C2_Kibra C2 domain fou 34.2 1.4E+02 0.0031 29.8 7.3 36 195-230 9-44 (124)
148 cd04046 C2_Calpain C2 domain p 34.0 4.7E+02 0.01 25.7 12.4 75 210-301 13-88 (126)
149 PF01591 6PF2K: 6-phosphofruct 33.9 42 0.0009 37.2 3.8 88 23-128 14-105 (222)
150 cd08616 PI-PLCXD1c Catalytic d 33.7 40 0.00087 38.8 3.8 30 102-131 98-127 (290)
151 KOG0086 GTPase Rab4, small G p 32.9 93 0.002 32.4 5.7 24 3-26 25-53 (214)
152 KOG2140 Uncharacterized conser 32.8 2.1E+02 0.0046 35.5 9.3 57 1037-1093 437-499 (739)
153 cd04017 C2D_Ferlin C2 domain f 32.7 2.4E+02 0.0052 28.2 8.8 30 202-231 3-32 (135)
154 cd08389 C2A_Synaptotagmin-14_1 32.5 1.5E+02 0.0033 29.3 7.2 94 197-302 13-109 (124)
155 PHA03378 EBNA-3B; Provisional 32.1 4.9E+02 0.011 33.3 12.3 9 175-183 160-168 (991)
156 cd01529 4RHOD_Repeats Member o 32.1 1.1E+02 0.0024 28.4 5.9 27 117-146 54-80 (96)
157 cd04026 C2_PKC_alpha_gamma C2 31.7 3.3E+02 0.0071 26.9 9.5 94 200-303 13-108 (131)
158 cd00030 C2 C2 domain. The C2 d 30.7 3.7E+02 0.0079 23.6 9.0 80 211-304 10-90 (102)
159 cd04010 C2B_RasA3 C2 domain se 29.7 2.5E+02 0.0054 29.0 8.4 28 202-231 2-29 (148)
160 TIGR02613 mob_myst_B mobile my 29.5 73 0.0016 34.2 4.6 47 101-148 88-146 (186)
161 cd04047 C2B_Copine C2 domain s 29.3 3.2E+02 0.0069 26.0 8.7 89 206-304 6-99 (110)
162 cd08391 C2A_C2C_Synaptotagmin_ 28.6 3.9E+02 0.0084 25.6 9.3 70 219-304 26-96 (121)
163 cd08620 PI-PLCXDc_like_1 Catal 28.1 55 0.0012 37.6 3.6 28 101-128 77-104 (281)
164 cd01444 GlpE_ST GlpE sulfurtra 27.8 1.1E+02 0.0023 28.2 5.0 26 118-146 55-80 (96)
165 smart00239 C2 Protein kinase C 27.8 4.3E+02 0.0093 23.4 9.1 81 207-299 7-88 (101)
166 PF00581 Rhodanese: Rhodanese- 27.7 1.1E+02 0.0023 28.7 5.1 23 116-140 64-86 (113)
167 KOG4672 Uncharacterized conser 27.4 3.4E+02 0.0075 32.6 9.6 10 1061-1070 470-479 (487)
168 cd04052 C2B_Tricalbin-like C2 27.0 2.5E+02 0.0055 27.0 7.6 68 219-301 11-79 (111)
169 cd01525 RHOD_Kc Member of the 26.8 87 0.0019 29.5 4.2 31 113-146 59-89 (105)
170 cd08587 PI-PLCXDc_like Catalyt 25.9 54 0.0012 37.5 3.1 75 37-130 47-121 (288)
171 cd08622 PI-PLCXDc_CG14945_like 25.7 59 0.0013 37.2 3.3 27 101-128 80-106 (276)
172 PF05659 RPW8: Arabidopsis bro 24.9 1.1E+02 0.0024 31.8 4.7 69 1081-1154 38-115 (147)
173 cd04018 C2C_Ferlin C2 domain t 24.8 4E+02 0.0087 27.7 8.9 71 219-303 33-104 (151)
174 cd01523 RHOD_Lact_B Member of 24.5 86 0.0019 29.4 3.7 27 117-146 59-85 (100)
175 PRK05600 thiamine biosynthesis 24.2 1.6E+02 0.0034 35.2 6.6 85 41-146 272-356 (370)
176 COG0607 PspE Rhodanese-related 24.1 92 0.002 29.3 3.9 28 116-146 58-85 (110)
177 cd08394 C2A_Munc13 C2 domain f 23.4 5.7E+02 0.012 26.0 9.4 83 202-304 4-86 (127)
178 cd04015 C2_plant_PLD C2 domain 23.3 8.2E+02 0.018 25.3 11.0 70 219-304 56-126 (158)
179 KOG3617 WD40 and TPR repeat-co 23.2 1.2E+02 0.0027 39.2 5.4 56 100-160 928-992 (1416)
180 smart00450 RHOD Rhodanese Homo 23.2 1.5E+02 0.0031 26.8 4.9 31 113-146 50-80 (100)
181 KOG2525 Folylpolyglutamate syn 23.1 1E+02 0.0022 37.9 4.6 78 99-189 52-135 (496)
182 cd04035 C2A_Rabphilin_Doc2 C2 23.1 5.4E+02 0.012 25.0 9.2 95 199-304 14-112 (123)
183 cd08676 C2A_Munc13-like C2 dom 22.8 4.8E+02 0.01 27.2 9.1 30 201-230 29-58 (153)
184 COG0075 Serine-pyruvate aminot 22.6 2E+02 0.0042 34.7 6.9 60 62-130 83-144 (383)
185 TIGR03865 PQQ_CXXCW PQQ-depend 22.5 1.2E+02 0.0026 31.8 4.6 28 117-146 114-141 (162)
186 PF09314 DUF1972: Domain of un 22.4 4.7E+02 0.01 28.3 9.1 73 28-114 10-83 (185)
187 cd04049 C2_putative_Elicitor-r 22.4 5.9E+02 0.013 24.7 9.3 30 202-231 3-32 (124)
188 cd04028 C2B_RIM1alpha C2 domai 22.1 5.6E+02 0.012 26.5 9.3 31 200-230 29-60 (146)
189 TIGR02981 phageshock_pspE phag 22.1 1.7E+02 0.0037 28.1 5.2 32 112-146 51-82 (101)
190 cd01519 RHOD_HSP67B2 Member of 22.0 95 0.0021 29.2 3.5 27 117-146 64-90 (106)
191 KOG3824 Huntingtin interacting 21.9 2.1E+02 0.0045 33.3 6.4 49 98-146 332-395 (472)
192 cd08557 PI-PLCc_bacteria_like 21.8 81 0.0018 35.2 3.5 77 38-132 34-110 (271)
193 cd08690 C2_Freud-1 C2 domain f 21.8 9.3E+02 0.02 25.2 12.0 96 202-306 6-110 (155)
194 KOG1089 Myotubularin-related p 21.8 1.2E+02 0.0025 38.1 4.9 37 357-393 508-545 (573)
195 KOG4672 Uncharacterized conser 21.8 5.3E+02 0.011 31.1 9.8 7 362-368 89-95 (487)
196 cd01522 RHOD_1 Member of the R 21.6 1.4E+02 0.003 29.3 4.6 27 117-146 62-88 (117)
197 cd04027 C2B_Munc13 C2 domain s 21.6 5.1E+02 0.011 25.5 8.7 29 202-230 3-31 (127)
198 PF05266 DUF724: Protein of un 20.7 2.3E+02 0.005 30.7 6.4 98 1063-1160 71-179 (190)
199 PF01371 Trp_repressor: Trp re 20.7 61 0.0013 30.7 1.7 37 1125-1161 35-75 (87)
200 cd01520 RHOD_YbbB Member of th 20.4 2.3E+02 0.0051 28.1 6.0 17 116-132 83-99 (128)
201 cd04051 C2_SRC2_like C2 domain 20.3 5.3E+02 0.011 25.1 8.5 89 202-304 2-96 (125)
No 1
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=4.2e-54 Score=499.27 Aligned_cols=303 Identities=23% Similarity=0.363 Sum_probs=248.7
Q ss_pred hhhhcccCCCCCeeeecCceEEeccCCCCCCcchHHhhcChHHHHHHHHHhCCCCcEEEEecCCCCccccccccccccCc
Q 001080 4 FRKFFYRKPPDGLLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDM 83 (1162)
Q Consensus 4 ~rr~~~~~~dlDLtyIT~RIiam~~~fP~~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f~~ 83 (1162)
.||++++|+||||+|||+||||| +||++++ |+.|||++++|++||+++|++| |+|||||.++++. ..+|++
T Consensus 3 k~r~~~~~~DLDltYIT~rIIam--sfPa~~~-es~yRN~l~dV~~fL~s~H~~~-y~vyNL~~er~yd-----~~~f~g 73 (434)
T KOG2283|consen 3 KRRYNEGGFDLDLTYITSRIIAM--SFPAEGI-ESLYRNNLEDVVLFLDSKHKDH-YKVYNLSSERLYD-----PSRFHG 73 (434)
T ss_pred cchhhhccccccceeeeeeEEEE--eCCCCcc-hhhhcCCHHHHHHHHhhccCCc-eEEEecCccccCC-----cccccc
Confidence 58999999999999999999999 7999999 8899999999999999999985 9999999544332 578999
Q ss_pred EEeeCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHhCc
Q 001080 84 TVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAP 163 (1162)
Q Consensus 84 ~v~~~P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~~~~~~~eAL~~~~~~~~ 163 (1162)
+|..|+|.||++| +|++|+.||++|++||++|++||||||||+|+|| ||+||||||+|++.+.++++||++|..+|
T Consensus 74 ~V~~~~~~Dh~~P--~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgr-tg~~icA~L~~~~~~~ta~eald~~~~kR- 149 (434)
T KOG2283|consen 74 RVARFGFDDHNPP--PLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGR-TGVMICAYLIYSGISATAEEALDYFNEKR- 149 (434)
T ss_pred ceeecCCCCCCCC--cHHHHHHHHHCHHHHHhcCccceEEEEccCCCcc-eEEEEeHHHHhhhhcCCHHHHHHHHhhhh-
Confidence 9999999999998 9999999999999999999999999999999999 99999999999999999999999986443
Q ss_pred hhhhccCCCCCCChHHHHHHHHHHHhhcCCCCCCCCC--ceeEEEEEEeecccc-CCCCcceeEEEEEecCCCcccCCCC
Q 001080 164 RELLQLMSPLNPLPSQLRYLQYVSRRNVGSEWPPLDR--ALTLDCVILRVIPNF-DGEGGCCPIFRIYGQDPLMVADRTP 240 (1162)
Q Consensus 164 ~~~~~~~s~~~~~PSQ~RYv~Yf~~ll~~~~~pp~~~--~l~L~~IiL~~iP~f-~~~~gcrP~~~Iy~~~~~~~~~~~~ 240 (1162)
+..+.+..+++|||+|||+||++++....+.++.+ .++|+.++|..||+| ...+||++++.||...
T Consensus 150 --~~~~~~~~~~~PSq~RYv~Y~~~~l~~~~~~~~~~~~~~f~~~~~~~~ip~~~~~~~~~~~~~~v~~~k--------- 218 (434)
T KOG2283|consen 150 --FDEGKSKGVTIPSQRRYVGYFSRVLLNGPLPPRSNSCPLFLHSFILISIPNFNSSRDGCRPAFPVYQGK--------- 218 (434)
T ss_pred --ccccccCCccCchhhHHHHHHHHHhhcCCcCcccccCceEeeeeeeeecCcccccCCCCCccceeeecc---------
Confidence 33333334499999999999999654445557776 899999999999994 4458999999999874
Q ss_pred cEEEecccccccceeecccCceEEEEccCCcccCcEEEEEEeCCCccc-------cCceEEEEEeecccccC--CEEEec
Q 001080 241 KVLFSTPKRSKLVRHYKQADCELVKIDIHCHIQGDVVLECISLDSDQE-------REEMMFRVMFNTAFIRS--NILMLN 311 (1162)
Q Consensus 241 k~lyss~~~~~~~r~y~~~d~~~i~~~i~~~v~GDV~I~~~h~~~~~~-------~~~~mFr~~FnT~FI~~--n~L~l~ 311 (1162)
+.+|+...+. .++.|.. ++ .|+|++++.++ ++|||.+...+ .+...|.++|||+++.. ..+.+.
T Consensus 219 ~~~~~~~s~~-~~~~~~~-~g-~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (434)
T KOG2283|consen 219 KKVYSFSSDG-IMRLGEL-DG-KIVIPLGLRVD----VKCYHKRTSSGNRGILKDKEFKGCQIQFYTGPFPEDETVVRFF 291 (434)
T ss_pred eeeEEeccCC-ccccccc-cc-ceecccccccc----eEEEeeccccCCcceeeccccceEEEeccCCCccccceeeecc
Confidence 5788877666 7788877 54 37788887777 89999864432 35567888888888763 445566
Q ss_pred cCCccccccCCCCCCCCcEEEEEEecc
Q 001080 312 RDEIDILWNSKDLFSKEFRAEVLFSEM 338 (1162)
Q Consensus 312 k~eLD~~~~~k~~fp~dF~Vel~F~~~ 338 (1162)
..+++.-. ..+.+..-|.|.+.-.+.
T Consensus 292 ~~~~~~~~-~~e~~~~~~~~~~~~~~~ 317 (434)
T KOG2283|consen 292 QADLPIYV-SNEFVFNFFQVSLEVENT 317 (434)
T ss_pred cccCCccc-cccccccccceeeecccC
Confidence 66666532 234556666666555443
No 2
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=2.9e-36 Score=350.81 Aligned_cols=201 Identities=20% Similarity=0.410 Sum_probs=174.0
Q ss_pred ccccCCCCccccCcccCCCcccchhhccc--cccCCcccccccccccccCCCCC-hHHHHHHHhhcCCCCCC--CCCCCC
Q 001080 955 RGLAHASPRLQSQPRKNNLKPYHWLKLTR--AMQGSLWAEAQKSDEASKAPEFD-MSELESLFSAAAPNSDL--GGKSGK 1029 (1162)
Q Consensus 955 ~~~~~~~~~~~~~~~~~klK~LhW~KI~~--~~~gTIW~~~~~~~~~~~~~~iD-~~eLE~LFs~k~~~~~~--~~~~k~ 1029 (1162)
...+.+...+...++...||+++|.||.. -.++++|.++.++ ++..-| |++|+..|+.+....+. +..+|+
T Consensus 608 PvlP~gLkpKK~~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv~Ed----k~en~dlfakL~~~Fatq~k~~k~~e~~eekk 683 (1102)
T KOG1924|consen 608 PVLPFGLKPKKVYKPEVPMRRFNWSKIVPRDLSENCFWVKVNED----KLENDDLFAKLALKFATQPKVKKEQEGGEEKK 683 (1102)
T ss_pred ccCCCCCCccccCCCCCccccCCccccCccccCccceeeecchh----hccchHHHHHHHHHhhcccccccccccccccc
Confidence 34445666788889999999999999974 5688999998753 222233 89999999998554442 112222
Q ss_pred CCCCCCCCCCcchhccccccccchhhhcccCCChhHHHHHHHhcCCCCCCHHHHHHHHhhCCCHHHHHHHhhhcCCCCCc
Q 001080 1030 SNRRSGPKPERVQLIELRRANNCEIMLTKVKIPLPDLMGSVLALDDSALDIDQVDNLIKFCPTKEEMEVLKNYNGDKGNL 1109 (1162)
Q Consensus 1030 ~~~~~~~K~~~vslLD~kRaqNI~I~L~k~k~s~eeL~~aIl~lD~~~L~~e~l~~Ll~~lPT~EEi~~Lk~y~gd~~~L 1109 (1162)
.+ .++|.+...|||.|.|||++|+|+.|+|+++||+.+|+++|+++|++..|++|++++|..|.+..|.+++.+.+.|
T Consensus 684 t~--~kKk~kel~ilDsKtaQnLsIflgS~rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaeye~l 761 (1102)
T KOG1924|consen 684 TG--TKKKVKELRILDSKTAQNLSIFLGSFRMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEYEDL 761 (1102)
T ss_pred ch--hhhhhhhheecchHHHHHHHHHHhhccCCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 21 2367778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhCCCchhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Q 001080 1110 GKCEQFFLELMKVPRVESKLRVFSFKIQFQTQVSDLRTSLNIINSASEEASF 1161 (1162)
Q Consensus 1110 ~~aEqF~l~L~~Vpr~~~RL~~llFk~~F~~~i~eL~~~L~~v~~Ac~elRn 1161 (1162)
.+.|||...|..|.|+.-||.+++||.+|.+++++|+..+-.|..||+|||+
T Consensus 762 ~e~EQF~vvm~~vkrL~pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~rk 813 (1102)
T KOG1924|consen 762 PEPEQFVVVMSQVKRLRPRLSAILFKLTFSEQVNNIKPDIVAVTAACEELRK 813 (1102)
T ss_pred CCHHHHhHHHhhccccChhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999997
No 3
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=99.97 E-value=4.6e-31 Score=313.30 Aligned_cols=190 Identities=29% Similarity=0.562 Sum_probs=166.7
Q ss_pred cCcccCCCcccchhhccc-cccCCcccccccccccccCCCCChHHHHHHHhhcCCCCCCCCC-CCCCCCCCCCCCCcchh
Q 001080 966 SQPRKNNLKPYHWLKLTR-AMQGSLWAEAQKSDEASKAPEFDMSELESLFSAAAPNSDLGGK-SGKSNRRSGPKPERVQL 1043 (1162)
Q Consensus 966 ~~~~~~klK~LhW~KI~~-~~~gTIW~~~~~~~~~~~~~~iD~~eLE~LFs~k~~~~~~~~~-~k~~~~~~~~K~~~vsl 1043 (1162)
..+++.+||+|||+||.. .+.+|||+++++. .++|+++||++|+.+......... +.......+++.+.++|
T Consensus 3 ~~~P~~klK~l~W~ki~~~~~~~tvW~~i~~~------~~~d~~~lE~lF~~k~~~~~~~~~~~~~~~~~~~~~~~~v~i 76 (432)
T smart00498 3 EPKPKKKLKPLHWDKLNPLDPRGTVWDKIDEN------SEGDLDELEELFAAKEKTKSASKDVSEKKSILKKKVSQEFKI 76 (432)
T ss_pred CCCCCCCCcCcCceeCCCccccCChhhhcCcc------cccCHHHHHHHhCcCccccCccccccccccccccccccceEe
Confidence 457889999999999985 6899999999743 279999999999987654431111 00000112245678999
Q ss_pred ccccccccchhhhcccCCChhHHHHHHHhcCCCCCCHHHHHHHHhhCCCHHHHHHHhhhcCC-CCCchhHHHHHHHhhCC
Q 001080 1044 IELRRANNCEIMLTKVKIPLPDLMGSVLALDDSALDIDQVDNLIKFCPTKEEMEVLKNYNGD-KGNLGKCEQFFLELMKV 1122 (1162)
Q Consensus 1044 LD~kRaqNI~I~L~k~k~s~eeL~~aIl~lD~~~L~~e~l~~Ll~~lPT~EEi~~Lk~y~gd-~~~L~~aEqF~l~L~~V 1122 (1162)
||.||+|||+|+|++|+++.++|++||++||..+|+.|.|++|++++||.||++.|++|.|+ .+.|+++|||+++|++|
T Consensus 77 ld~krs~ni~I~L~~l~~~~~ei~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~L~~~Eqfl~~l~~i 156 (432)
T smart00498 77 LDPKRSQNLAILLRKLHMSYEEICEAILEGDEDVLSVDLLEQLLKYAPTKEELKKLREYKEEDPEELARAEQFLLLISNI 156 (432)
T ss_pred echhHHhhHHHHHHhcCCCHHHHHHHHHhcChhhCCHHHHHHHHhhCcCHHHHHHHHHhcccchhhcchHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999887 79999999999999999
Q ss_pred CchhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Q 001080 1123 PRVESKLRVFSFKIQFQTQVSDLRTSLNIINSASEEASF 1161 (1162)
Q Consensus 1123 pr~~~RL~~llFk~~F~~~i~eL~~~L~~v~~Ac~elRn 1161 (1162)
+++++||+||+|+.+|++.+++|+.+|++|..||++||+
T Consensus 157 p~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~ 195 (432)
T smart00498 157 PYLEERLNALLFKANFEEEVEDLKPQLEKVEAACEELRE 195 (432)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999986
No 4
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=99.96 E-value=2.1e-30 Score=302.50 Aligned_cols=191 Identities=32% Similarity=0.608 Sum_probs=157.0
Q ss_pred cccCcccCCCcccchhhccc-cccCCcccccccccccccCCCCChHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCcch
Q 001080 964 LQSQPRKNNLKPYHWLKLTR-AMQGSLWAEAQKSDEASKAPEFDMSELESLFSAAAPNSDLGGKSGKSNRRSGPKPERVQ 1042 (1162)
Q Consensus 964 ~~~~~~~~klK~LhW~KI~~-~~~gTIW~~~~~~~~~~~~~~iD~~eLE~LFs~k~~~~~~~~~~k~~~~~~~~K~~~vs 1042 (1162)
++..+++.+||+|||++|.. +..+|||++++.... ..++|+++||++|+.+........ ......++.+.++
T Consensus 2 k~~~~p~~k~k~l~W~~i~~~~~~~tiW~~~~~~~~---~~~~d~~~le~~F~~~~~~~~~~~----~~~~~~~~~~~~~ 74 (370)
T PF02181_consen 2 KKKPKPKKKLKPLHWDKIPNSKIKGTIWSKIDEDEF---NIDIDFEELEELFAKKEKEKKSKK----KQASKKKKKKKIS 74 (370)
T ss_dssp ------SS-B------EESSGGCTTSCCCCTCCHHH---HCTSHHHHHHHHTBSCECHHHH--------HCCCCTTCCES
T ss_pred CCCCCCCCCCcCCCceecCcccccCCccccCccccc---chhhhHHHHHHHhccccccccccc----ccccccccccccc
Confidence 34668899999999999985 788999999975432 238999999999999876644211 1122346788999
Q ss_pred hccccccccchhhhcccCCChhHHHHHHHhcCCCCCCHHHHHHHHhhCCCHHHHHHHhhhcCCCCCchhHHHHHHHhhCC
Q 001080 1043 LIELRRANNCEIMLTKVKIPLPDLMGSVLALDDSALDIDQVDNLIKFCPTKEEMEVLKNYNGDKGNLGKCEQFFLELMKV 1122 (1162)
Q Consensus 1043 lLD~kRaqNI~I~L~k~k~s~eeL~~aIl~lD~~~L~~e~l~~Ll~~lPT~EEi~~Lk~y~gd~~~L~~aEqF~l~L~~V 1122 (1162)
|||.||+|||+|+|++|+++.++|+++|++||..+|+.|.|+.|++++||.||+++|++|.|+.+.|+++|+|+++|++|
T Consensus 75 iLd~kr~~ni~I~L~~~~~~~~~l~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~E~f~~~l~~i 154 (370)
T PF02181_consen 75 ILDPKRSQNIGIVLKKFKLSPEELIQAILNLDEEVLTEELLENLLKILPTPEEIEALKAYKGDPATLGPAEQFLLELSKI 154 (370)
T ss_dssp SS-HHHHHHHHHHHHHHTS-HHHHHHHHHTTTTCCCTHHHHHHHHHHCGGHHHHHHHHCTCTSGTTB-HHHHHHHHHTTS
T ss_pred ccchHHHHHHHHHhhccCCCHHHHHHHHHccCccccchHHHHHHHhcCCCchHHHHHHHHhccHHhhccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Q 001080 1123 PRVESKLRVFSFKIQFQTQVSDLRTSLNIINSASEEASF 1161 (1162)
Q Consensus 1123 pr~~~RL~~llFk~~F~~~i~eL~~~L~~v~~Ac~elRn 1161 (1162)
+++++||+||+|+.+|+++++++...|+.|..||++||+
T Consensus 155 p~~~~rl~~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~ 193 (370)
T PF02181_consen 155 PRLKERLEALLFKSEFEEQLEELKEKLEKLEAACEELRE 193 (370)
T ss_dssp TTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999985
No 5
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=99.95 E-value=4.1e-27 Score=236.45 Aligned_cols=130 Identities=35% Similarity=0.617 Sum_probs=108.0
Q ss_pred CCCceeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccceeecccCceEEEEccCCcccCcEE
Q 001080 198 LDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVRHYKQADCELVKIDIHCHIQGDVV 277 (1162)
Q Consensus 198 ~~~~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r~y~~~d~~~i~~~i~~~v~GDV~ 277 (1162)
+.++|.|++|+|++||+|+.++|||||++||+.+ +.+|.+...+...+.|.+.. .++.++.++.|+|||+
T Consensus 2 ~~~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~---------~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~GDV~ 71 (134)
T PF10409_consen 2 PPRPLFLKSIILHGIPNFNSGGGCRPYIEIYNGG---------KKVFSTSKSYEDPKSYEQDS-VIIELPKNLPLRGDVL 71 (134)
T ss_dssp S--EEEEEEEEEES-TTSTTSSCCTEEEEEEETT---------EEEEETCCTCCCCCEEETTC-EEEEEEEEEEEESEEE
T ss_pred CCeeEEEEEEEEECCCccCCCCCEEEEEEEECCC---------ccEEEeccceecccccccee-EEEEeCCCCeEeCCEE
Confidence 5678999999999999998889999999999985 57776666666666664444 4577777899999999
Q ss_pred EEEEeCCCccccCceEEEEEeeccccc--CCEEEeccCCccccccC-CCCCCCCcEEEEEEec
Q 001080 278 LECISLDSDQEREEMMFRVMFNTAFIR--SNILMLNRDEIDILWNS-KDLFSKEFRAEVLFSE 337 (1162)
Q Consensus 278 I~~~h~~~~~~~~~~mFr~~FnT~FI~--~n~L~l~k~eLD~~~~~-k~~fp~dF~Vel~F~~ 337 (1162)
|+|||.+.....+++||||||||+||. ++.|+|+|+|||.++++ .++|++||+|||+|++
T Consensus 72 i~~~~~~~~~~~~~~~f~~~FnT~Fi~~~~~~l~~~k~eLD~~~kdk~k~f~~~f~Vel~f~e 134 (134)
T PF10409_consen 72 IKFYHKRSSSMSKEKMFRFWFNTGFIEPNNNVLRFTKSELDKAHKDKHKRFPPDFKVELVFSE 134 (134)
T ss_dssp EEEEECETTECCCEEEEEEEEEGGGSBTTTCEEEEEGGGSBTCCCGCTCCS-TT-EEEEEEEE
T ss_pred EEEEeCCCcccccCeEEEEEEeeeeeeccccEEEcCHHHCCCcccCcccccCCCeEEEEEEeC
Confidence 999999866667889999999999999 99999999999999875 3799999999999986
No 6
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=99.88 E-value=2.8e-22 Score=236.95 Aligned_cols=195 Identities=26% Similarity=0.406 Sum_probs=165.1
Q ss_pred CccccCcccCCCcccchhhccc-cccCCcccccccccccccCCCCChHHHHHHHhh-cCCCCCCCCCCCCCCCCCCCCCC
Q 001080 962 PRLQSQPRKNNLKPYHWLKLTR-AMQGSLWAEAQKSDEASKAPEFDMSELESLFSA-AAPNSDLGGKSGKSNRRSGPKPE 1039 (1162)
Q Consensus 962 ~~~~~~~~~~klK~LhW~KI~~-~~~gTIW~~~~~~~~~~~~~~iD~~eLE~LFs~-k~~~~~~~~~~k~~~~~~~~K~~ 1039 (1162)
+.+...+.+.++-.++|..+.. +++||+|.++. |+....++|++++|+.|+. +...... ...+...+..++...
T Consensus 360 ~ik~~~~tk~~~p~lnW~alKP~qv~~tvf~~~~---De~Il~~lD~~~~ee~Fk~~~s~~~~~-~e~~a~~~~~~ka~q 435 (830)
T KOG1923|consen 360 TIKKPTPTKTKSPSLNWLALKPIQVKGTVFHELN---DEKILEALDFSRFEEQFKILKSNGQIL-DESSAVSKAMTKAPQ 435 (830)
T ss_pred hhcCCCcccccCCCccccccCccccccchhhhhh---HHHHHHhhhHHHHHHHHHhhhcccchh-hhHHHHHHHhhhhhh
Confidence 3455667778888999999985 88999999984 4556778999999999998 3222211 111111111225578
Q ss_pred cchhccccccccchhhhcccCCChhHHHHHHHhcCCCCCCHHHHHHHHhhCCCHHHHHHHhhhcC---CCCCchhHHHHH
Q 001080 1040 RVQLIELRRANNCEIMLTKVKIPLPDLMGSVLALDDSALDIDQVDNLIKFCPTKEEMEVLKNYNG---DKGNLGKCEQFF 1116 (1162)
Q Consensus 1040 ~vslLD~kRaqNI~I~L~k~k~s~eeL~~aIl~lD~~~L~~e~l~~Ll~~lPT~EEi~~Lk~y~g---d~~~L~~aEqF~ 1116 (1162)
+++++|.+|.+|++|-++ +.+..++|+.||..+|-..|..+.+++|.+++||++|.+.+++|+. ..+.|...|+|+
T Consensus 436 k~tLle~~R~~nlaiT~R-~~~~~~~V~~Aih~~dLk~L~~~~ve~L~r~lPTe~E~kl~~~~~~e~~pme~Ls~edkFm 514 (830)
T KOG1923|consen 436 KRTLLEQRRLFNLAITRR-VQMKAKEVMAAIHPLDLKALSLEPVELLQRILPTEAEVKLLREYERERSPMENLSEEDKFM 514 (830)
T ss_pred hhhHHHHHHHHHHHHHhh-hcCchHHHHHHhhhccccccCCcHHHHHHhcCCchHHHHHHHHhhhhcCchhhcccchhhh
Confidence 999999999999999999 9999999999999999999999999999999999999999999964 458899999999
Q ss_pred HHhhCCCchhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Q 001080 1117 LELMKVPRVESKLRVFSFKIQFQTQVSDLRTSLNIINSASEEASF 1161 (1162)
Q Consensus 1117 l~L~~Vpr~~~RL~~llFk~~F~~~i~eL~~~L~~v~~Ac~elRn 1161 (1162)
+.+.+|.|+++||..|.|+.+|.+.+.-|.+++..+..|+..++.
T Consensus 515 l~lskIErle~klatM~~m~nF~dsv~ll~pq~~si~aAS~s~k~ 559 (830)
T KOG1923|consen 515 LSLSKIERLEEKLATMEFMGNFPDSVQLLAPQLISIIAASKSLKE 559 (830)
T ss_pred hhhhhhhhhHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhhHHH
Confidence 999999999999999999999999999999999999999987763
No 7
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=99.83 E-value=2e-20 Score=210.58 Aligned_cols=182 Identities=23% Similarity=0.397 Sum_probs=154.0
Q ss_pred cCcccCCCcccchhhccc---------cccCCcccccccccccccCCCCChHHHHHHHhhcCCCCCCCCCCCCCCCCCCC
Q 001080 966 SQPRKNNLKPYHWLKLTR---------AMQGSLWAEAQKSDEASKAPEFDMSELESLFSAAAPNSDLGGKSGKSNRRSGP 1036 (1162)
Q Consensus 966 ~~~~~~klK~LhW~KI~~---------~~~gTIW~~~~~~~~~~~~~~iD~~eLE~LFs~k~~~~~~~~~~k~~~~~~~~ 1036 (1162)
....++++-+|||..++- ...+|+|+.++.. .+|...||.||+.+..+.. -.|+.+ ..
T Consensus 277 ~~~~~r~~~KL~Wr~~~~~~~~Gv~~~r~~~t~W~s~D~~-------~~D~~r~~~LFEsr~~~~~---P~KK~~---E~ 343 (817)
T KOG1925|consen 277 ALPTKRKTVKLFWRDVKLAGGHGVSASRPCATLWASLDPV-------SVDTARLEHLFESRAKEVL---PSKKAG---EG 343 (817)
T ss_pred cccccCceeEEEeecceecCCCCCccccccchhhhccCcc-------eecHHHHHHHHHHhhhhhc---cchhhc---cc
Confidence 334566788899988762 2467999999753 4999999999998876654 223322 24
Q ss_pred CCCcchhccccccccchhhhcccCCChhHHHHHHHhcCCCCCCHHHHHHHHhhCCCHHHHHHHhhhc--CCCCCchhHHH
Q 001080 1037 KPERVQLIELRRANNCEIMLTKVKIPLPDLMGSVLALDDSALDIDQVDNLIKFCPTKEEMEVLKNYN--GDKGNLGKCEQ 1114 (1162)
Q Consensus 1037 K~~~vslLD~kRaqNI~I~L~k~k~s~eeL~~aIl~lD~~~L~~e~l~~Ll~~lPT~EEi~~Lk~y~--gd~~~L~~aEq 1114 (1162)
+....+|||.||.|.|.|.|.+|. ++..|..||+++|+-+++.|.|+.|++|+||.||++.|+.-. ...-.||.+||
T Consensus 344 r~~~~tVL~~KRt~AINIGLT~LP-Pv~VI~AA~~~FD~~~~~KDGIEK~L~MmPt~eE~qkIe~aqlaNPEipLG~AEQ 422 (817)
T KOG1925|consen 344 RRTMTTVLDPKRTNAINIGLTTLP-PVHVIKAALLNFDEFAVSKDGIEKLLTMMPTEEERQKIEGAQLANPEIPLGPAEQ 422 (817)
T ss_pred ceeeeeecCcccccceeeccccCC-chhhhHHHHhcchhhhcchhhHHHHHHhCCCHHHHHHHHHHHhcCCCCCCCcHHH
Confidence 567789999999999999999998 788999999999999999999999999999999999998763 33356999999
Q ss_pred HHHHhhCCCchhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Q 001080 1115 FFLELMKVPRVESKLRVFSFKIQFQTQVSDLRTSLNIINSASEEASF 1161 (1162)
Q Consensus 1115 F~l~L~~Vpr~~~RL~~llFk~~F~~~i~eL~~~L~~v~~Ac~elRn 1161 (1162)
|++.|..|+.+.+||+.|+|+..|+..-.||.+-|-.+..|++++-+
T Consensus 423 fLLtLSsI~~L~aRL~LWaFklDY~~~EKeiAEPL~Dlk~gm~qlE~ 469 (817)
T KOG1925|consen 423 FLLTLSSIGGLAARLQLWAFKLDYDSMEKEIAEPLFDLKVGMEQLEQ 469 (817)
T ss_pred HHHHHhhhHHHHHHHHHHhhhcccchhhHHhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999888754
No 8
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=99.75 E-value=2.4e-17 Score=211.46 Aligned_cols=188 Identities=35% Similarity=0.608 Sum_probs=159.7
Q ss_pred CcccCCCcccchhhccc-cccCCcccccccccccccCCCCCh---HHHHHHHhhcCCCCCCCCCCCCCCCCCC--CCCCc
Q 001080 967 QPRKNNLKPYHWLKLTR-AMQGSLWAEAQKSDEASKAPEFDM---SELESLFSAAAPNSDLGGKSGKSNRRSG--PKPER 1040 (1162)
Q Consensus 967 ~~~~~klK~LhW~KI~~-~~~gTIW~~~~~~~~~~~~~~iD~---~eLE~LFs~k~~~~~~~~~~k~~~~~~~--~K~~~ 1040 (1162)
..++.+||++||+++.. .....+|.++.... ...|. +.+|.+|+.......... +..+.... .....
T Consensus 390 ~~p~~~lk~l~wdk~~~~~~~~~~w~~~~~~~-----~~~~~~~~~~~e~lf~~~~~~~~~~~--~~~~~~~~~~~~~~~ 462 (833)
T KOG1922|consen 390 AQPKNKLKPLHWDKTRGSSKRSMVWSEVDSSS-----SLFDPPLSELMEALFGLVKFLPSDNG--GDTGREEKTAVEKKR 462 (833)
T ss_pred CCCCCCCCCccccccCCCCccCCCCCccccCC-----cCCCCCcccccccchhhhhcccCCCC--CCCcccccccccccc
Confidence 56788999999999984 67889999997542 23444 899999987655443111 11111111 12256
Q ss_pred chhccccccccchhhhcccCCChhHHHHHHHhcCCCCCCHHHHHHHHhhCCCHHHHHHHhhhcCCCCCchhHHHHHHH-h
Q 001080 1041 VQLIELRRANNCEIMLTKVKIPLPDLMGSVLALDDSALDIDQVDNLIKFCPTKEEMEVLKNYNGDKGNLGKCEQFFLE-L 1119 (1162)
Q Consensus 1041 vslLD~kRaqNI~I~L~k~k~s~eeL~~aIl~lD~~~L~~e~l~~Ll~~lPT~EEi~~Lk~y~gd~~~L~~aEqF~l~-L 1119 (1162)
+.++|.++.|||+|+|+.|++..+++.++|+.+|+.++..++|++|++++|++||...++.|.++...|+.+|+||.+ +
T Consensus 463 ~~v~~~r~~~n~~ill~sl~~~~~~~~~a~~~~~~~~~~~~~l~~l~~~~pt~~E~~~l~~~~~~~~~l~~~e~~~~~~~ 542 (833)
T KOG1922|consen 463 LKVLDPRRPQNIAILLSSLNMPTEDIPQALLELDDSVLGLDQLEKLLKFAPTKEEETKLKEESGDPLTLGDAEKFFFEEL 542 (833)
T ss_pred ccccCCCCccceeeehhhcCCchHHHHHHHhccCccccCHHHHHHHHccCCChhHHHHHHhhcCCCCccchHHHHHHHHh
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999999998 5
Q ss_pred hCCCchhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Q 001080 1120 MKVPRVESKLRVFSFKIQFQTQVSDLRTSLNIINSASEEASF 1161 (1162)
Q Consensus 1120 ~~Vpr~~~RL~~llFk~~F~~~i~eL~~~L~~v~~Ac~elRn 1161 (1162)
..|++++.|+++++|+..|.+.+..+...+++++.||+++++
T Consensus 543 ~~ip~~~~~~~~~~f~~~~~~~v~~l~~~~~~~~~~~~~l~~ 584 (833)
T KOG1922|consen 543 SGIPEFEERLQALSFRSKFSEEVTALKKKLETVEVASKELLE 584 (833)
T ss_pred hcchHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHhhhh
Confidence 579999999999999999999999999999999999999986
No 9
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.74 E-value=4.6e-17 Score=169.50 Aligned_cols=152 Identities=13% Similarity=0.180 Sum_probs=119.1
Q ss_pred CCCCeeeecCceEEeccCCCCCCcchHHhhcChHHHHHHHHHhCCCCcEEEEecCCCCccccccccccccCcEEeeCCCC
Q 001080 12 PPDGLLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRH 91 (1162)
Q Consensus 12 ~dlDLtyIT~RIiam~~~fP~~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f~~~v~~~P~~ 91 (1162)
.|-.++||+.|+|+|. -|.+.. +.+-++.|+..+- ..|+|+|++.|+. +.+...+..+.+||+.
T Consensus 7 ~~~~~~~~~~r~~~~~--~P~~~~--------~~~~l~~L~~~gI---~~Iv~l~~~~~~~---~~~~~~gi~~~~~p~~ 70 (166)
T PTZ00242 7 KDRQIEYVLFKFLILD--APSPSN--------LPLYIKELQRYNV---THLVRVCGPTYDA---ELLEKNGIEVHDWPFD 70 (166)
T ss_pred CCcceeeeceEEEEec--CCCccc--------HHHHHHHHHhCCC---eEEEecCCCCCCH---HHHHHCCCEEEecCCC
Confidence 4667999999999994 455422 2222466666654 4599999876643 2355678999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHh--CCCcEEEEEecCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhhcc
Q 001080 92 YEGCPLLTMETVHHFLRSSESWLSL--GHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAPRELLQL 169 (1162)
Q Consensus 92 d~~~P~p~L~~l~~~~~~i~~wL~~--d~~nVVvVHCkaG~GR~tG~~ia~yLly~~~~~~~~eAL~~~~~~~~~~~~~~ 169 (1162)
|++.| +.+.+..|++.+++.+.. +.++.|+|||.+|.|| ||+++||||+..+.+ +.++|+++++++|+..
T Consensus 71 D~~~P--~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigR-Sgt~~a~yL~~~~~~-s~~eAi~~vr~~R~~~---- 142 (166)
T PTZ00242 71 DGAPP--PKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGR-APILVALALVEYGGM-EPLDAVGFVREKRKGA---- 142 (166)
T ss_pred CCCCC--CHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCH-HHHHHHHHHHHhCCC-CHHHHHHHHHHHCCCC----
Confidence 98876 899999999999998876 6678999999999999 999999999988866 7899999997655432
Q ss_pred CCCCCCChHHHHHHHHHHHhhcC
Q 001080 170 MSPLNPLPSQLRYLQYVSRRNVG 192 (1162)
Q Consensus 170 ~s~~~~~PSQ~RYv~Yf~~ll~~ 192 (1162)
....|++||+.|.+.++.
T Consensus 143 -----i~~~Q~~~l~~~~~~~~~ 160 (166)
T PTZ00242 143 -----INQTQLQFLKKYKPRKKA 160 (166)
T ss_pred -----chHHHHHHHHHHHHHhcc
Confidence 247899999999976543
No 10
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.68 E-value=3.3e-16 Score=162.94 Aligned_cols=164 Identities=13% Similarity=0.152 Sum_probs=124.2
Q ss_pred hhhhcccCC-------CCCeeeecCc-eEEeccC-CCCCCcchHHhh-cChHHHHHHHHHhCCCCcEEEEecCCCCcccc
Q 001080 4 FRKFFYRKP-------PDGLLEISER-VFVFDCC-FTTDILEEEEYK-EYLGGIVGQLREYFPEASFMVFNFREGEHQSQ 73 (1162)
Q Consensus 4 ~rr~~~~~~-------dlDLtyIT~R-Iiam~~~-fP~~~~~e~~YR-n~i~~V~~~L~~~h~~~~y~V~NL~~~~~~~~ 73 (1162)
|++|...++ +.|.+||+.. +|+++.. +.+-++ |..|- +....+..+|+.+.- -.|+.|.++.|+.
T Consensus 34 ~~~~~~~~ye~ye~ve~gdfnwI~p~~~i~f~~p~~~s~gi-~~~f~~~~~~~~~~~~~~~~v---~s~vrln~~~yd~- 108 (225)
T KOG1720|consen 34 FSSFNVDEYEHYEAVENGDFNWIIPDRFIAFAGPHLKSRGI-ESGFPLHLPQPYIQYFKNNNV---TSIVRLNKRLYDA- 108 (225)
T ss_pred hheecchhheeeeccCCCCcceeccchhhhhcCccccccch-hhcccccCChhHHHHhhhccc---ceEEEcCCCCCCh-
Confidence 445555444 5899999986 7777311 112234 55565 555667778873332 3588888887763
Q ss_pred ccccccccCcEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCchHHHHHHHHHHHhcCCCCHHH
Q 001080 74 IGQVLSEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQK 153 (1162)
Q Consensus 74 ~~~~~s~f~~~v~~~P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~~~~~~~e 153 (1162)
+.+..-|..-.+++|.|..+| +++.+++|++.+++-++ + .+|+|||+||.|| ||+||||||||...+ ++.|
T Consensus 109 --~~f~~~Gi~h~~l~f~Dg~tP--~~~~v~~fv~i~e~~~~-~--g~iaVHCkaGlGR-TG~liAc~lmy~~g~-ta~e 179 (225)
T KOG1720|consen 109 --KRFTDAGIDHHDLFFADGSTP--TDAIVKEFVKIVENAEK-G--GKIAVHCKAGLGR-TGTLIACYLMYEYGM-TAGE 179 (225)
T ss_pred --HHhcccCceeeeeecCCCCCC--CHHHHHHHHHHHHHHHh-c--CeEEEEeccCCCc-hhHHHHHHHHHHhCC-CHHH
Confidence 235566778888999998887 99999999999999887 4 6899999999999 999999999999655 7899
Q ss_pred HHHHHHHhCchhhhccCCCCCCChHHHHHHHHHHHh
Q 001080 154 TLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVSRR 189 (1162)
Q Consensus 154 AL~~~~~~~~~~~~~~~s~~~~~PSQ~RYv~Yf~~l 189 (1162)
||++++..|+..+ ..|-|..|+..|..+
T Consensus 180 aI~~lR~~RpG~V--------~gpqQ~~l~~~q~~~ 207 (225)
T KOG1720|consen 180 AIAWLRICRPGAV--------IGPQQHKLLHKQRDL 207 (225)
T ss_pred HHHHHHhcCCccc--------cCHHHHHHHHHHHHH
Confidence 9999976665443 689999999999884
No 11
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.62 E-value=4.7e-15 Score=159.85 Aligned_cols=142 Identities=13% Similarity=0.177 Sum_probs=108.5
Q ss_pred eecCceEEeccCCCCCCcchHHhhcChHHHHHHHHHhCCCCcEEEEecCCCCccccccccccccCcEEeeCCCCCCCCCC
Q 001080 18 EISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCPL 97 (1162)
Q Consensus 18 yIT~RIiam~~~fP~~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f~~~v~~~P~~d~~~P~ 97 (1162)
|-.=|+|+|+ -|.+ ..+ .+-+..|+..+-. .|..+|++.|+. +.+...|+++++++|.|+++|
T Consensus 89 ~~~~rfLi~~--~P~~----~~~----~~yl~eLk~~gV~---~lVrlcE~~Yd~---~~~~~~GI~~~~lpipDg~aP- 151 (241)
T PTZ00393 89 HGKIKILILD--APTN----DLL----PLYIKEMKNYNVT---DLVRTCERTYND---GEITSAGINVHELIFPDGDAP- 151 (241)
T ss_pred cCceeEEEeC--CCCH----HHH----HHHHHHHHHcCCC---EEEECCCCCCCH---HHHHHcCCeEEEeecCCCCCC-
Confidence 3344899995 4543 222 2223556655554 488899987753 225567999999999999887
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhhccCCCCCCCh
Q 001080 98 LTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAPRELLQLMSPLNPLP 177 (1162)
Q Consensus 98 p~L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~~~~~~~eAL~~~~~~~~~~~~~~~s~~~~~P 177 (1162)
+.+.|.+|++.++..+..+ ..|+|||+||.|| ||+|+||||+..|+ +.+|||++++..|+..+ +.
T Consensus 152 -s~~~i~~~l~~i~~~l~~g--~~VaVHC~AGlGR-TGtl~AayLI~~Gm--speeAI~~VR~~RPgAI---------n~ 216 (241)
T PTZ00393 152 -TVDIVSNWLTIVNNVIKNN--RAVAVHCVAGLGR-APVLASIVLIEFGM--DPIDAIVFIRDRRKGAI---------NK 216 (241)
T ss_pred -CHHHHHHHHHHHHHHHhcC--CeEEEECCCCCCH-HHHHHHHHHHHcCC--CHHHHHHHHHHHCCCCC---------CH
Confidence 8999999999999887654 6899999999999 99999999998664 88999999976665433 35
Q ss_pred HHHHHHHHHHHhhc
Q 001080 178 SQLRYLQYVSRRNV 191 (1162)
Q Consensus 178 SQ~RYv~Yf~~ll~ 191 (1162)
.|++||+.|...+.
T Consensus 217 ~Q~~fL~~y~~~~~ 230 (241)
T PTZ00393 217 RQLQFLKAYKKKKK 230 (241)
T ss_pred HHHHHHHHHHHhcc
Confidence 79999999997654
No 12
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.41 E-value=5.5e-13 Score=136.36 Aligned_cols=122 Identities=13% Similarity=0.232 Sum_probs=81.4
Q ss_pred eEEeccCCCCCCcchHHhhcChHHHHHHHHHhCCCCcEEEEecCCCCc-----cccccccccccCcEEeeCCCCCCCCCC
Q 001080 23 VFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEH-----QSQIGQVLSEYDMTVMDYPRHYEGCPL 97 (1162)
Q Consensus 23 Iiam~~~fP~~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NL~~~~~-----~~~~~~~~s~f~~~v~~~P~~d~~~P~ 97 (1162)
.+.| |..|.-.+ ..+|.+++.-+..|+..... .|+-|+++.. -.++.+.+..+++.++|||+.|.++|
T Consensus 42 ~Lgl-t~~PG~k~--~d~~RdL~~DL~~Lk~~G~~---~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aP- 114 (168)
T PF05706_consen 42 FLGL-TFLPGCKF--KDWRRDLQADLERLKDWGAQ---DVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAP- 114 (168)
T ss_dssp EEEE-ES-TT-EE--TTEEB-HHHHHHHHHHTT-----EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---
T ss_pred eeee-ecCCCccc--ccccchHHHHHHHHHHCCCC---EEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCC-
Confidence 3455 25666544 44666676667778765544 4777887753 14556667789999999999999998
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCchHHHHHHHHHHHhcCCCCHHHHH
Q 001080 98 LTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTL 155 (1162)
Q Consensus 98 p~L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~~~~~~~eAL 155 (1162)
.++.+..++..+..+|+++ +.|+|||++|.|| ||+|+||+|+..+...++++||
T Consensus 115 -d~~~~~~i~~eL~~~L~~g--~~V~vHC~GGlGR-tGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 115 -DFAAAWQILEELAARLENG--RKVLVHCRGGLGR-TGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp --HHHHHHHHHHHHHHHHTT----EEEE-SSSSSH-HHHHHHHHHHHH-SSS-HHHHH
T ss_pred -CHHHHHHHHHHHHHHHHcC--CEEEEECCCCCCH-HHHHHHHHHHHHcCCCChhhcC
Confidence 8999999999999999997 5699999999999 9999999999999988988886
No 13
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.34 E-value=1.8e-11 Score=123.36 Aligned_cols=136 Identities=17% Similarity=0.177 Sum_probs=97.1
Q ss_pred eeecCceEEeccCCCCCCcchHHhhcChHHHHHHHHHhCCCCcEEEEecCCCCccccccccccccCcEEeeCCCCCCCCC
Q 001080 17 LEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCP 96 (1162)
Q Consensus 17 tyIT~RIiam~~~fP~~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f~~~v~~~P~~d~~~P 96 (1162)
+.|+++|++. +++...- ..+|....- -.|+||+++.+.. ...+.+++++|+.|++..
T Consensus 2 ~~I~~~l~~G--~~~~~~~------------~~~l~~~gi---~~Vi~l~~~~~~~------~~~~~~~~~ipi~D~~~~ 58 (138)
T smart00195 2 SEILPHLYLG--SYSSALN------------LALLKKLGI---THVINVTNEVPNL------NKKGFTYLGVPILDNTET 58 (138)
T ss_pred cEEeCCeEEC--ChhHcCC------------HHHHHHcCC---CEEEEccCCCCCC------CCCCCEEEEEECCCCCCC
Confidence 5689999887 5665321 355655433 3599999886431 245678889999885433
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhhccCCCCCCC
Q 001080 97 LLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAPRELLQLMSPLNPL 176 (1162)
Q Consensus 97 ~p~L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~~~~~~~eAL~~~~~~~~~~~~~~~s~~~~~ 176 (1162)
...+.+..+++.|+..+.++ ..|+|||++|.|| ||++++|||++...+ +.++|+++++++|+. + ...
T Consensus 59 -~~~~~~~~~~~~i~~~~~~~--~~VlVHC~~G~~R-S~~v~~~yl~~~~~~-~~~~A~~~v~~~R~~-~-------~p~ 125 (138)
T smart00195 59 -KISPYFPEAVEFIEDAEKKG--GKVLVHCQAGVSR-SATLIIAYLMKYRNL-SLNDAYDFVKDRRPI-I-------SPN 125 (138)
T ss_pred -ChHHHHHHHHHHHHHHhcCC--CeEEEECCCCCch-HHHHHHHHHHHHhCC-CHHHHHHHHHHHCCc-c-------CCC
Confidence 23456666666666655444 6799999999999 999999999988777 689999999655432 2 257
Q ss_pred hHHHHHHHHHHH
Q 001080 177 PSQLRYLQYVSR 188 (1162)
Q Consensus 177 PSQ~RYv~Yf~~ 188 (1162)
..|++-|..|++
T Consensus 126 ~~~~~qL~~~e~ 137 (138)
T smart00195 126 FGFLRQLIEYER 137 (138)
T ss_pred HhHHHHHHHHhh
Confidence 788888888875
No 14
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.22 E-value=3.6e-11 Score=120.13 Aligned_cols=122 Identities=19% Similarity=0.267 Sum_probs=90.2
Q ss_pred HHHHHHhCCCCcEEEEecCCCCccccccccccccCcEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEec
Q 001080 48 VGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCE 127 (1162)
Q Consensus 48 ~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f~~~v~~~P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~nVVvVHCk 127 (1162)
..+|....-. .|.|++++.... ......+...+++++.|.... ...+.+..+++.|+.+..++ +.|+|||+
T Consensus 11 ~~~l~~~~I~---~Vin~~~~~~~~---~~~~~~~~~~~~i~~~D~~~~-~~~~~~~~~~~~i~~~~~~~--~~VlVHC~ 81 (133)
T PF00782_consen 11 IAFLKNLGIT---HVINLQEECPNP---YFYKPEGIEYLRIPIDDDPEE-PILEHLDQAVEFIENAISEG--GKVLVHCK 81 (133)
T ss_dssp HHHHHHTTEE---EEEECSSSSSTS---HHHTTTTSEEEEEEEESSTTS-HGGGGHHHHHHHHHHHHHTT--SEEEEEES
T ss_pred HHHHHHCCCC---EEEEccCCCcCc---hhcccCCCEEEEEEecCCCCc-chHHHHHHHHHhhhhhhccc--ceeEEEeC
Confidence 4566655433 589999986432 112345677788887774332 35677888888888886665 67999999
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhhccCCCCCCChHHHHHHHHHHH
Q 001080 128 RGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVSR 188 (1162)
Q Consensus 128 aG~GR~tG~~ia~yLly~~~~~~~~eAL~~~~~~~~~~~~~~~s~~~~~PSQ~RYv~Yf~~ 188 (1162)
+|.+| ||+++||||++.+.+ +.++|+++++.+|+ .+ +..+.|+++|..|++
T Consensus 82 ~G~~R-S~~v~~ayLm~~~~~-~~~~A~~~v~~~rp-~~-------~~~~~~~~~L~~~e~ 132 (133)
T PF00782_consen 82 AGLSR-SGAVAAAYLMKKNGM-SLEEAIEYVRSRRP-QI-------NPNPSFIRQLYEYEK 132 (133)
T ss_dssp SSSSH-HHHHHHHHHHHHHTS-SHHHHHHHHHHHST-TS-------THHHHHHHHHHHHHH
T ss_pred CCccc-chHHHHHHHHHHcCC-CHHHHHHHHHHHCC-CC-------CCCHHHHHHHHHhhc
Confidence 99999 999999999998777 88999999976553 22 245679999988875
No 15
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.20 E-value=2e-10 Score=115.30 Aligned_cols=137 Identities=15% Similarity=0.130 Sum_probs=95.2
Q ss_pred eeeecCceEEeccCCCCCCcchHHhhcChHHHHHHHHHhCCCCcEEEEecCCCCccccccccccccCcEEeeCCCCCCCC
Q 001080 16 LLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGC 95 (1162)
Q Consensus 16 LtyIT~RIiam~~~fP~~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f~~~v~~~P~~d~~~ 95 (1162)
++.|+++|++- ++++..- ..+|.+..- -.|+||+++.+. .....-+.++++|++.|.+.
T Consensus 2 ~~~i~~~l~~g--~~~~~~d------------~~~L~~~gi---~~VI~l~~~~~~----~~~~~~~~~~~~~~~~D~~~ 60 (139)
T cd00127 2 LSEITPGLYLG--SYPAASD------------KELLKKLGI---THVLNVAKEVPN----ENLFLSDFNYLYVPILDLPS 60 (139)
T ss_pred cCEEcCCeEEC--ChhHhcC------------HHHHHHcCC---CEEEEcccCCCC----cccCCCCceEEEEEceeCCC
Confidence 67899999987 5665321 345654433 359999998764 11334577888898888764
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhhccCCCCCC
Q 001080 96 PLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAPRELLQLMSPLNP 175 (1162)
Q Consensus 96 P~p~L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~~~~~~~eAL~~~~~~~~~~~~~~~s~~~~ 175 (1162)
. .-...+..+++.++..++++ +.|+|||.+|.|| ||+|+++||++.+.+ +.++|+++++++++. . ..
T Consensus 61 ~-~~~~~~~~~~~~i~~~~~~~--~~vlVHC~~G~~R-s~~~~~~~l~~~~~~-~~~~a~~~vr~~r~~-~-------~~ 127 (139)
T cd00127 61 Q-DISKYFDEAVDFIDDAREKG--GKVLVHCLAGVSR-SATLVIAYLMKTLGL-SLREAYEFVKSRRPI-I-------SP 127 (139)
T ss_pred C-ChHHHHHHHHHHHHHHHhcC--CcEEEECCCCCch-hHHHHHHHHHHHcCC-CHHHHHHHHHHHCCc-c-------CC
Confidence 3 22345566777777666554 5799999999999 999999999987765 779999999765542 1 14
Q ss_pred ChHHHHHHHHH
Q 001080 176 LPSQLRYLQYV 186 (1162)
Q Consensus 176 ~PSQ~RYv~Yf 186 (1162)
...+++-|.-|
T Consensus 128 ~~~~~~~l~~~ 138 (139)
T cd00127 128 NAGFMRQLKEY 138 (139)
T ss_pred CHHHHHHHHHh
Confidence 55566555544
No 16
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.18 E-value=1.1e-10 Score=123.38 Aligned_cols=98 Identities=15% Similarity=0.152 Sum_probs=81.1
Q ss_pred cccCcEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCchHHHHHHHHHHHhcCCCCHHHHHHHH
Q 001080 79 SEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMI 158 (1162)
Q Consensus 79 s~f~~~v~~~P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~~~~~~~eAL~~~ 158 (1162)
...+.++.++++.|+..| .++.+.+++..|++-++++. .|||||.+|.|| ||+++|||||+.+.+...++++.+.
T Consensus 69 ~~~~~~~~~~~~~D~~~p--~~~~l~~~v~~i~~~~~~g~--kVvVHC~~GigR-SgtviaA~lm~~~~~~~~~~~i~~~ 143 (180)
T COG2453 69 ENDGIQVLHLPILDGTVP--DLEDLDKIVDFIEEALSKGK--KVVVHCQGGIGR-SGTVIAAYLMLYGGLSLADEAIAVK 143 (180)
T ss_pred ccCCceeeeeeecCCCCC--cHHHHHHHHHHHHHHHhcCC--eEEEEcCCCCch-HHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 445678889999999987 88999999999999888874 799999999999 9999999999998888999999876
Q ss_pred HHhCchhhhccCCCCCCChHHHHHHHHHHHh
Q 001080 159 YKQAPRELLQLMSPLNPLPSQLRYLQYVSRR 189 (1162)
Q Consensus 159 ~~~~~~~~~~~~s~~~~~PSQ~RYv~Yf~~l 189 (1162)
++++ .+ . +.+..|.+|...+...
T Consensus 144 ~~~r-~~---~----v~~~~q~~~~~e~~~~ 166 (180)
T COG2453 144 RRRR-PG---A----VVTEIQHLFELEQELF 166 (180)
T ss_pred HhcC-Cc---c----cccHHHHHHHHHHHHH
Confidence 5443 32 1 2677888887777654
No 17
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.18 E-value=1.2e-10 Score=116.08 Aligned_cols=115 Identities=21% Similarity=0.341 Sum_probs=88.6
Q ss_pred EEecCCCCccccccccccccCcEEeeCCCCC-CCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCchHHHHHHH
Q 001080 62 VFNFREGEHQSQIGQVLSEYDMTVMDYPRHY-EGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAA 140 (1162)
Q Consensus 62 V~NL~~~~~~~~~~~~~s~f~~~v~~~P~~d-~~~P~p~L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~ia~ 140 (1162)
|..|.+.....-.......+++..+..+-.| .+.| +++.|+..++.|+.....+ ..|+||||||+|| +++|++|
T Consensus 55 vv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~P--s~~~i~~aVeFi~k~asLG--ktvYVHCKAGRtR-SaTvV~c 129 (183)
T KOG1719|consen 55 VVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAP--SLENIQKAVEFIHKNASLG--KTVYVHCKAGRTR-SATVVAC 129 (183)
T ss_pred EEEeCCchhhhhhhHHHHhccceeEEeccccccCCC--CHHHHHHHHHHHHhccccC--CeEEEEecCCCcc-chhhhhh
Confidence 4555544332223334677888877776555 4665 9999999999999998887 5799999999999 9999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHhCchhhhccCCCCCCChHHHHHHHHHHHhh
Q 001080 141 LLIYRKQFTGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVSRRN 190 (1162)
Q Consensus 141 yLly~~~~~~~~eAL~~~~~~~~~~~~~~~s~~~~~PSQ~RYv~Yf~~ll 190 (1162)
|||..+.+ +.++|.+++++.|+.-+ .-++|++-|.-|.+.+
T Consensus 130 YLmq~~~w-tpe~A~~~vr~iRp~Vl--------L~~~Qw~~l~ef~~~~ 170 (183)
T KOG1719|consen 130 YLMQHKNW-TPEAAVEHVRKIRPRVL--------LRPAQWDVLKEFYKQI 170 (183)
T ss_pred hhhhhcCC-CHHHHHHHHHhcCccee--------ecHHHHHHHHHHHHHH
Confidence 99987776 66889999977665544 5899999998776543
No 18
>PRK12361 hypothetical protein; Provisional
Probab=99.16 E-value=4.1e-10 Score=138.63 Aligned_cols=142 Identities=16% Similarity=0.210 Sum_probs=106.2
Q ss_pred CeeeecCceEEeccCCCCCCcchHHhhcChHHHHHHHHHhCCCCcEEEEecCCCCccccccccccccCcEEeeCCCCCCC
Q 001080 15 GLLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEG 94 (1162)
Q Consensus 15 DLtyIT~RIiam~~~fP~~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f~~~v~~~P~~d~~ 94 (1162)
-...|+++|+.. +++...- ..+|++..-. .|+||++|... ..+....-+++.+++|..|+.
T Consensus 94 ~~~~I~~~l~lG--~~~~a~d------------~~~L~~~gI~---~Vldlt~E~~~--~~~~~~~~~i~yl~iPi~D~~ 154 (547)
T PRK12361 94 AIQKIDENLYLG--CRLFPAD------------LEKLKSNKIT---AILDVTAEFDG--LDWSLTEEDIDYLNIPILDHS 154 (547)
T ss_pred cceEEcCcEEEC--CCCCccc------------HHHHHHcCCC---EEEEccccccc--ccccccccCceEEEeecCCCC
Confidence 458899999998 5654321 3566644333 48899876321 111112235678889999987
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhhccCCCCC
Q 001080 95 CPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAPRELLQLMSPLN 174 (1162)
Q Consensus 95 ~P~p~L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~~~~~~~eAL~~~~~~~~~~~~~~~s~~~ 174 (1162)
.| .++.+.+.++.|+++++++ ..|+|||++|.|| +++|++|||++.+...+.+||+++++++|+...
T Consensus 155 ~p--~~~~l~~a~~~i~~~~~~~--~~VlVHC~~G~sR-Sa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~-------- 221 (547)
T PRK12361 155 VP--TLAQLNQAINWIHRQVRAN--KSVVVHCALGRGR-SVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTAR-------- 221 (547)
T ss_pred CC--cHHHHHHHHHHHHHHHHCC--CeEEEECCCCCCc-HHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCC--------
Confidence 65 8899999999999988776 4599999999999 999999999988766688999999976654422
Q ss_pred CChHHHHHHHHHHH
Q 001080 175 PLPSQLRYLQYVSR 188 (1162)
Q Consensus 175 ~~PSQ~RYv~Yf~~ 188 (1162)
..+.|+++++.|.+
T Consensus 222 ~n~~q~~~l~~~~~ 235 (547)
T PRK12361 222 LNKRQLRALEKMLE 235 (547)
T ss_pred CCHHHHHHHHHHHH
Confidence 56799999998875
No 19
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.07 E-value=3.6e-09 Score=103.09 Aligned_cols=148 Identities=18% Similarity=0.216 Sum_probs=107.4
Q ss_pred cCCCCCeeeecCceEEeccCCCCCCcchHHhhcChHHHHHHHHHhCCCCcEEEEecCCCCccccccccccccCcEEeeCC
Q 001080 10 RKPPDGLLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYP 89 (1162)
Q Consensus 10 ~~~dlDLtyIT~RIiam~~~fP~~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f~~~v~~~P 89 (1162)
+--+..++|=.=|.++.+ -|++.. ...+|+++. +|+- -.|...|+-.|+... +.+-|+.|+||+
T Consensus 6 rPAPveIsy~~MrFLITh--nPtnaT----ln~fieELk-----Kygv--ttvVRVCe~TYdt~~---lek~GI~Vldw~ 69 (173)
T KOG2836|consen 6 RPAPVEISYKNMRFLITH--NPTNAT----LNKFIEELK-----KYGV--TTVVRVCEPTYDTTP---LEKEGITVLDWP 69 (173)
T ss_pred CCCCeeeeccceEEEEec--CCCchh----HHHHHHHHH-----hcCC--eEEEEecccccCCch---hhhcCceEeecc
Confidence 344566777777777773 455422 222233322 3443 578999999998643 567899999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhhcc
Q 001080 90 RHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAPRELLQL 169 (1162)
Q Consensus 90 ~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~~~~~~~eAL~~~~~~~~~~~~~~ 169 (1162)
|+|...| +-+.+..++..+..-+.++++..|+|||-||.|| .-+++|--|+-+|+ ..++|++|++.+||..+
T Consensus 70 f~dg~pp--p~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgr-apvlvalalie~gm--kyedave~ir~krrga~--- 141 (173)
T KOG2836|consen 70 FDDGAPP--PNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGR-APVLVALALIEAGM--KYEDAVEMIRQKRRGAI--- 141 (173)
T ss_pred cccCCCC--chHHHHHHHHHHHHHHhhCCCCeEEEEeecccCc-chHHHHHHHHHccc--cHHHHHHHHHHHhhccc---
Confidence 9986554 5666677777666667789999999999999999 89999999998887 66899999976665544
Q ss_pred CCCCCCChHHHHHHHHHH
Q 001080 170 MSPLNPLPSQLRYLQYVS 187 (1162)
Q Consensus 170 ~s~~~~~PSQ~RYv~Yf~ 187 (1162)
.--|+.||+.|.
T Consensus 142 ------n~kql~~lekyr 153 (173)
T KOG2836|consen 142 ------NSKQLLYLEKYR 153 (173)
T ss_pred ------cHHHHHHHHHhC
Confidence 335888887664
No 20
>PHA03247 large tegument protein UL36; Provisional
Probab=98.95 E-value=7.1e-06 Score=109.14 Aligned_cols=10 Identities=20% Similarity=0.780 Sum_probs=6.3
Q ss_pred ccCCcccccc
Q 001080 985 MQGSLWAEAQ 994 (1162)
Q Consensus 985 ~~gTIW~~~~ 994 (1162)
.+.++|-..+
T Consensus 3024 l~q~~~~~~~ 3033 (3151)
T PHA03247 3024 LKQTLWPPDD 3033 (3151)
T ss_pred cccCCCCCCC
Confidence 4667776554
No 21
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=98.87 E-value=2e-08 Score=95.23 Aligned_cols=89 Identities=18% Similarity=0.218 Sum_probs=67.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEecCCCCchHHHHHHHHHHHhcCC-----CCHHHHHHHHHHh
Q 001080 88 YPRHYEGCPLLTMETVHHFLRSSESWLSLGH-QNVLLMHCERGGWPVLAFMLAALLIYRKQF-----TGEQKTLDMIYKQ 161 (1162)
Q Consensus 88 ~P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~-~nVVvVHCkaG~GR~tG~~ia~yLly~~~~-----~~~~eAL~~~~~~ 161 (1162)
..|.|++.|. ..+.+++|++.++.|.+... ++.|+|||.+|.|| ||+++++||++.+.. ....+++..++.+
T Consensus 8 ~~Wpd~~~P~-~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gR-tg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 85 (105)
T smart00012 8 TGWPDHGVPE-SPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGR-TGTFVALDILLQQLESETGEVDIFQTVKELRKQ 85 (105)
T ss_pred CCCCCCCCCC-CHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCh-hhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhh
Confidence 4677878762 34889999999999987643 57899999999999 999999999987653 3455777777655
Q ss_pred CchhhhccCCCCCCChHHHHHHHHH
Q 001080 162 APRELLQLMSPLNPLPSQLRYLQYV 186 (1162)
Q Consensus 162 ~~~~~~~~~s~~~~~PSQ~RYv~Yf 186 (1162)
|+..+ .+..|.+|++..
T Consensus 86 r~~~~--------~~~~q~~~~~~~ 102 (105)
T smart00012 86 RPGMV--------QTFEQYLFLYRA 102 (105)
T ss_pred hhhhC--------CcHHHHHHHHHH
Confidence 54433 677887777654
No 22
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=98.87 E-value=2e-08 Score=95.23 Aligned_cols=89 Identities=18% Similarity=0.218 Sum_probs=67.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEecCCCCchHHHHHHHHHHHhcCC-----CCHHHHHHHHHHh
Q 001080 88 YPRHYEGCPLLTMETVHHFLRSSESWLSLGH-QNVLLMHCERGGWPVLAFMLAALLIYRKQF-----TGEQKTLDMIYKQ 161 (1162)
Q Consensus 88 ~P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~-~nVVvVHCkaG~GR~tG~~ia~yLly~~~~-----~~~~eAL~~~~~~ 161 (1162)
..|.|++.|. ..+.+++|++.++.|.+... ++.|+|||.+|.|| ||+++++||++.+.. ....+++..++.+
T Consensus 8 ~~Wpd~~~P~-~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gR-tg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 85 (105)
T smart00404 8 TGWPDHGVPE-SPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGR-TGTFVALDILLQQLESETGEVDIFQTVKELRKQ 85 (105)
T ss_pred CCCCCCCCCC-CHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCh-hhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhh
Confidence 4677878762 34889999999999987643 57899999999999 999999999987653 3455777777655
Q ss_pred CchhhhccCCCCCCChHHHHHHHHH
Q 001080 162 APRELLQLMSPLNPLPSQLRYLQYV 186 (1162)
Q Consensus 162 ~~~~~~~~~s~~~~~PSQ~RYv~Yf 186 (1162)
|+..+ .+..|.+|++..
T Consensus 86 r~~~~--------~~~~q~~~~~~~ 102 (105)
T smart00404 86 RPGMV--------QTFEQYLFLYRA 102 (105)
T ss_pred hhhhC--------CcHHHHHHHHHH
Confidence 54433 677887777654
No 23
>PHA03247 large tegument protein UL36; Provisional
Probab=98.87 E-value=2.5e-06 Score=113.18 Aligned_cols=10 Identities=0% Similarity=0.029 Sum_probs=5.1
Q ss_pred ccCcEEEEEE
Q 001080 272 IQGDVVLECI 281 (1162)
Q Consensus 272 v~GDV~I~~~ 281 (1162)
+.|.+.|.|.
T Consensus 2131 ~~s~l~Vn~L 2140 (3151)
T PHA03247 2131 AGSILFVQRL 2140 (3151)
T ss_pred hhhhhhheec
Confidence 4455555554
No 24
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.51 E-value=2.1e-06 Score=103.33 Aligned_cols=10 Identities=60% Similarity=0.740 Sum_probs=4.6
Q ss_pred hhhHH-Hhhhh
Q 001080 517 KYIQE-ITQQV 526 (1162)
Q Consensus 517 ~~~~~-~~~~~ 526 (1162)
+.|+| |++.+
T Consensus 426 kLIEecISqIv 436 (1102)
T KOG1924|consen 426 KLIEECISQIV 436 (1102)
T ss_pred HHHHHHHHHHH
Confidence 34555 44443
No 25
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.47 E-value=5.5e-07 Score=98.81 Aligned_cols=92 Identities=15% Similarity=0.215 Sum_probs=70.7
Q ss_pred EeeC-CCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCchHHHHHHHHHHHhc----CCCCHHHHHHHHH
Q 001080 85 VMDY-PRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRK----QFTGEQKTLDMIY 159 (1162)
Q Consensus 85 v~~~-P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~----~~~~~~eAL~~~~ 159 (1162)
.++| .|.|++.| ...+.+++|++.++.+...+.++-|+|||.+|.|| ||+++|++++... ...+..+++..++
T Consensus 132 ~~~~~~W~d~~~p-~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gR-sg~~~a~~~~~~~~~~~~~~~~~~~v~~iR 209 (231)
T cd00047 132 HFQYTGWPDHGVP-ESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGR-TGTFIAIDILLQRLEAEGVVDIFQTVKELR 209 (231)
T ss_pred EEeECCCCCCCcc-CChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCc-cchHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4444 57888887 34588899999999886545567899999999999 9999999987554 3456778888886
Q ss_pred HhCchhhhccCCCCCCChHHHHHHHHH
Q 001080 160 KQAPRELLQLMSPLNPLPSQLRYLQYV 186 (1162)
Q Consensus 160 ~~~~~~~~~~~s~~~~~PSQ~RYv~Yf 186 (1162)
++|+..+ .+..|.+|++..
T Consensus 210 ~~R~~~v--------~~~~Qy~f~~~~ 228 (231)
T cd00047 210 SQRPGMV--------QTEEQYIFLYRA 228 (231)
T ss_pred hcccccc--------CCHHHHHHHHHH
Confidence 6654333 789999998865
No 26
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.46 E-value=9.2e-07 Score=104.42 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=69.1
Q ss_pred cEEeeC-CCCCCCCCCCCHHHHHHHHHHHHHHHHhC-------CCcEEEEEecCCCCchHHHHHHHHHHHhcCCCCHHHH
Q 001080 83 MTVMDY-PRHYEGCPLLTMETVHHFLRSSESWLSLG-------HQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKT 154 (1162)
Q Consensus 83 ~~v~~~-P~~d~~~P~p~L~~l~~~~~~i~~wL~~d-------~~nVVvVHCkaG~GR~tG~~ia~yLly~~~~~~~~eA 154 (1162)
+.++|| -|.|||+| +.-+.|+.|.+.++.|-..+ .+...||||.||.|| ||++||||++..+...+.++.
T Consensus 423 V~QFHyTnWPDHGVP-pST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGR-TGTFIAi~llk~~~~~sle~I 500 (535)
T PRK15375 423 IPVLHVKNWPDHQPL-PSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGR-TGTMAAALVLKDNPHSNLEQV 500 (535)
T ss_pred EEEEEeCCCCCCCCC-CChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCch-HHHHHHHHHHhccccCCHHHH
Confidence 446666 78999997 34567888988888774332 123458999999999 999999999876556678888
Q ss_pred HHHHHHhCchhhhccCCCCCCChHHHHHHHHHH
Q 001080 155 LDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVS 187 (1162)
Q Consensus 155 L~~~~~~~~~~~~~~~s~~~~~PSQ~RYv~Yf~ 187 (1162)
+..++.+|.. ..| .+.-|.-.|..+.
T Consensus 501 V~dlR~qRng---~MV----Qt~eQy~~l~~~~ 526 (535)
T PRK15375 501 RADFRNSRNN---RML----EDASQFVQLKAMQ 526 (535)
T ss_pred HHHHHhcCCc---ccc----ccHHHHHHHHHHH
Confidence 8888655432 223 6888866666554
No 27
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.30 E-value=2.8e-06 Score=94.93 Aligned_cols=87 Identities=14% Similarity=0.188 Sum_probs=67.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCchHHHHHHHHHHHhc----CCCCHHHHHHHHHHhCch
Q 001080 89 PRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRK----QFTGEQKTLDMIYKQAPR 164 (1162)
Q Consensus 89 P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~----~~~~~~eAL~~~~~~~~~ 164 (1162)
.|.|++.| ...+.+++|++.++.+... ..+-|+|||.+|.|| ||+++|++++... ...+..+++..++++|+.
T Consensus 165 ~W~d~~~P-~~~~~~~~~i~~v~~~~~~-~~~pivVHC~~G~gR-sg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~ 241 (258)
T smart00194 165 NWPDHGVP-ESPKSILDLVRAVRKSQST-STGPIVVHCSAGVGR-TGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPG 241 (258)
T ss_pred CCCCCCCC-CCHHHHHHHHHHHHHhhcc-CCCCEEEEeCCCCCc-cchhhHHHHHHHHHHHcCCCCHHHHHHHHHhcccc
Confidence 67888887 3668889999999988654 246899999999999 9999999887543 334567888888766554
Q ss_pred hhhccCCCCCCChHHHHHHHHH
Q 001080 165 ELLQLMSPLNPLPSQLRYLQYV 186 (1162)
Q Consensus 165 ~~~~~~s~~~~~PSQ~RYv~Yf 186 (1162)
.+ .+..|.+|++..
T Consensus 242 ~v--------~~~~Qy~f~~~~ 255 (258)
T smart00194 242 MV--------QTEEQYIFLYRA 255 (258)
T ss_pred cc--------CCHHHHHHHHHH
Confidence 33 788999888754
No 28
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=98.20 E-value=5.9e-06 Score=86.35 Aligned_cols=122 Identities=14% Similarity=0.150 Sum_probs=65.0
Q ss_pred HHHHHHhCCCCcEEEEecCCCCccccccccccccCcEEeeCCCCCCCCC--CCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 001080 48 VGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCP--LLTMETVHHFLRSSESWLSLGHQNVLLMH 125 (1162)
Q Consensus 48 ~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f~~~v~~~P~~d~~~P--~p~L~~l~~~~~~i~~wL~~d~~nVVvVH 125 (1162)
..||++.+-. .|.||+.+.+..+....+.+.+++.++++......+ ..+-+.+.++++.| |+. .+.-|+||
T Consensus 25 ~~fL~~L~LK---TII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~i---ld~-~n~PvLiH 97 (164)
T PF03162_consen 25 FPFLERLGLK---TIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEII---LDP-RNYPVLIH 97 (164)
T ss_dssp HHHHHHHT-S---EEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHH---H-G-GG-SEEEE
T ss_pred HHHHHHCCCc---eEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHH---hCC-CCCCEEEE
Confidence 5788886554 499999987654444445678889999876554321 12455555555543 222 34679999
Q ss_pred ecCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhhccCCCCCCChHHHHHHHHHHH
Q 001080 126 CERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVSR 188 (1162)
Q Consensus 126 CkaG~GR~tG~~ia~yLly~~~~~~~~eAL~~~~~~~~~~~~~~~s~~~~~PSQ~RYv~Yf~~ 188 (1162)
|+.|+.| ||+|||||=.+.|+ +...+++-|++.+... ..-.-.+||+.|..
T Consensus 98 C~~G~~r-TG~vvg~lRk~Q~W--~~~~i~~Ey~~f~~~~---------~~~~~~~fIe~f~~ 148 (164)
T PF03162_consen 98 CNHGKDR-TGLVVGCLRKLQGW--SLSSIFDEYRRFAGPK---------IRYLDEQFIELFDV 148 (164)
T ss_dssp -SSSSSH-HHHHHHHHHHHTTB---HHHHHHHHHHHHGGG-----------HHHHHHHHT---
T ss_pred eCCCCcc-hhhHHHHHHHHcCC--CHHHHHHHHHHhcCCC---------CcHHHHHHHHhcCc
Confidence 9999988 99999999866655 5566777665433221 23344667777764
No 29
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.07 E-value=7.5e-06 Score=89.21 Aligned_cols=92 Identities=17% Similarity=0.249 Sum_probs=70.7
Q ss_pred EEeeC-CCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCchHHHHHHHHHHHhcCC----CCHHHHHHHH
Q 001080 84 TVMDY-PRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQF----TGEQKTLDMI 158 (1162)
Q Consensus 84 ~v~~~-P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~~~----~~~~eAL~~~ 158 (1162)
.+++| .|.+++.| ...+.+++|++.+..|. .+.++-|+|||.+|.|| +|+++++.++...+. .+..+++..+
T Consensus 136 ~~~~~~~W~~~~~P-~~~~~~~~~~~~v~~~~-~~~~~pivVhc~~G~gR-sg~f~~~~~~~~~~~~~~~~~v~~~~~~l 212 (235)
T PF00102_consen 136 THFHYTNWPDDGVP-PSPESFLDFIRKVNKSK-DDPNGPIVVHCSDGVGR-SGTFCAIDILIEQLKKEGEVDVFEIVKKL 212 (235)
T ss_dssp EEEEEESSSSSSSG-SSSHHHHHHHHHHHHHH-STTSSEEEEESSSSSHH-HHHHHHHHHHHHHHHHHSEECHHHHHHHH
T ss_pred cceeeeeccccccc-cccchhhhhhhhccccc-cCCccceEeeccccccc-ccccccchhhccccccccchhhHHHHHHH
Confidence 34444 77888877 57899999999999997 66778999999999999 999999998876653 3556677776
Q ss_pred HHhCchhhhccCCCCCCChHHHHHHHHH
Q 001080 159 YKQAPRELLQLMSPLNPLPSQLRYLQYV 186 (1162)
Q Consensus 159 ~~~~~~~~~~~~s~~~~~PSQ~RYv~Yf 186 (1162)
+++|...+ .+..|.+|+++.
T Consensus 213 R~~R~~~i--------~~~~qy~f~~~~ 232 (235)
T PF00102_consen 213 RQQRPGAI--------QSPEQYRFCYMA 232 (235)
T ss_dssp HTTSTTSS--------SSHHHHHHHHHH
T ss_pred HhhCCCcc--------CCHHHHHHHHHH
Confidence 55443322 788998888765
No 30
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=98.00 E-value=2.1e-05 Score=98.47 Aligned_cols=88 Identities=16% Similarity=0.134 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCchHHHHHHHHHHHhcC-C---CCHHHHHHHHHHhCch
Q 001080 89 PRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQ-F---TGEQKTLDMIYKQAPR 164 (1162)
Q Consensus 89 P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~~-~---~~~~eAL~~~~~~~~~ 164 (1162)
-|.||||| -....+++|++.|.+-- .+-+--|+|||.||.|| ||++|++=++.+-. . -..-+.+++++.+|..
T Consensus 1035 aWPDHg~P-~D~~~FL~FleevrsvR-~~t~pPilvHCSAGiGR-TGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~ 1111 (1144)
T KOG0792|consen 1035 AWPDHGVP-DDPNDFLDFLEEVRSVR-RGTNPPILVHCSAGIGR-TGVLILMETALCLLEHNEPVDILDIVRTMRDQRAM 1111 (1144)
T ss_pred ccccCCCC-CChHHHHHHHHHHHHHh-ccCCCCeEEEccCCCCc-ceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Confidence 67899999 47788888888887743 33334799999999999 99999875443322 1 1222344444333322
Q ss_pred hhhccCCCCCCChHHHHHHHHHH
Q 001080 165 ELLQLMSPLNPLPSQLRYLQYVS 187 (1162)
Q Consensus 165 ~~~~~~s~~~~~PSQ~RYv~Yf~ 187 (1162)
+ +.+.+|-+||.-..
T Consensus 1112 -m-------VQT~~QYkFVyevi 1126 (1144)
T KOG0792|consen 1112 -M-------VQTLSQYKFVYEVI 1126 (1144)
T ss_pred -h-------ccchHHhhHHHHHH
Confidence 2 38999988887543
No 31
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=97.92 E-value=2.4e-05 Score=90.82 Aligned_cols=142 Identities=12% Similarity=0.167 Sum_probs=97.5
Q ss_pred CceEEecc----CCCCCCcchHHhhcChHHHHHHHHHhCCCCcEEEEecCCCCccccccccccccCcEEeeCCCCCCCCC
Q 001080 21 ERVFVFDC----CFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCP 96 (1162)
Q Consensus 21 ~RIiam~~----~fP~~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f~~~v~~~P~~d~~~P 96 (1162)
.|+|++-+ +|..... .+.+|-.-.++.+.|.++--.- .++..|.....+. ....+.+.+...+..-+..+++
T Consensus 24 ~rfi~~K~pL~~~~~~k~~-~~~~~f~~~dl~~~l~~~~~~v-gl~iDltnt~ryy-~~~~~~~~g~~Y~K~~c~g~~~- 99 (393)
T KOG2386|consen 24 TRFIPFKTPLNSSYSTKTF-PGSQRFQPKDLFELLKEHNYKV-GLKIDLTNTLRYY-DKPELEERGVKYLKRNCPGRGV- 99 (393)
T ss_pred ceEEEEecccCCCCCcCCC-CCccccCHHHHHHHHHhcCceE-EEEEeccceeeee-ccccccccceeEEEeccCCccc-
Confidence 35555532 5666555 4444888999999998764332 4556665443221 1111233333333333344443
Q ss_pred CCCHHHHHHHHHHHHHHHH--hCCCcEEEEEecCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhhc
Q 001080 97 LLTMETVHHFLRSSESWLS--LGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAPRELLQ 168 (1162)
Q Consensus 97 ~p~L~~l~~~~~~i~~wL~--~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~~~~~~~eAL~~~~~~~~~~~~~ 168 (1162)
.|..+....|.+.++.+.. ++.+.+|.|||.+|+-| ||.|||+||+-.+.+ +..+|+.+|...|..++.+
T Consensus 100 vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~Nr-tgyLI~~yL~~~~~~-s~~~aik~f~~~r~~gi~k 171 (393)
T KOG2386|consen 100 VPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNR-TGYLICAYLADVGGY-SSSEAIKRFADARPPGIEK 171 (393)
T ss_pred CCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccc-cceeeeeeeeeccCc-cHHHHHHHHHHhCCCccCc
Confidence 3599999999999999999 78889999999999999 999999999988885 6688999997766665543
No 32
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.80 E-value=0.00049 Score=78.37 Aligned_cols=122 Identities=11% Similarity=0.121 Sum_probs=71.4
Q ss_pred CCeeeecCceEEeccCCCCCCcchHHhhcChHHHHHHHHHhCCCCcEEEEecCCCCcccccccccccc-CcEEeeCCCCC
Q 001080 14 DGLLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEY-DMTVMDYPRHY 92 (1162)
Q Consensus 14 lDLtyIT~RIiam~~~fP~~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f-~~~v~~~P~~d 92 (1162)
.+++-|..+|+.-+ +..... ...|....-. .|.|+....-..+ +... +.+.++.+..|
T Consensus 73 ~~~~~i~p~l~lg~--~~~~~~------------~~~l~~~~it---~vln~~~~~~~~~----~~~~~~~~y~~i~~~D 131 (285)
T KOG1716|consen 73 NPIVEILPNLYLGS--QGVASD------------PDLLKKLGIT---HVLNVSSSCPNPR----FLKEQGIKYLRIPVED 131 (285)
T ss_pred CCceeecCCceecC--cccccc------------hhhHHHcCCC---EEEEecccCCccc----cccccCceEEeccccC
Confidence 56777788887763 222111 2334333323 3777766532211 0111 33344455555
Q ss_pred CCCCCCCHHH-HHHHHHHHHHHHHhCCCcEEEEEecCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHhC
Q 001080 93 EGCPLLTMET-VHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQA 162 (1162)
Q Consensus 93 ~~~P~p~L~~-l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~~~~~~~eAL~~~~~~~ 162 (1162)
.... .|.. +-+.++.|+.-+.. +..|+|||.+|.+| +++++.|||++...+ +-++|++++..+|
T Consensus 132 ~~~~--~i~~~~~~~~~fI~~a~~~--~~~vlVHC~~GvSR-Sat~viAYlM~~~~~-~l~~A~~~vk~~R 196 (285)
T KOG1716|consen 132 NPST--DILQHFPEAISFIEKAREK--GGKVLVHCQAGVSR-SATLVIAYLMKYEGL-SLEDAYELVKSRR 196 (285)
T ss_pred Cccc--cHHHHHHHHHHHHHHHHhC--CCeEEEEcCCccch-hHHHHHHHHHHHcCC-CHHHHHHHHHHhC
Confidence 4332 3333 33444444444433 47899999999999 999999999988876 5588999985544
No 33
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=97.75 E-value=2.5e-05 Score=89.65 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEecCCCCchHHHHHHHHHHH----hcCC---CCHHHHHHHHHH
Q 001080 89 PRHYEGCPLLTMETVHHFLRSSESWLSL-GHQNVLLMHCERGGWPVLAFMLAALLIY----RKQF---TGEQKTLDMIYK 160 (1162)
Q Consensus 89 P~~d~~~P~p~L~~l~~~~~~i~~wL~~-d~~nVVvVHCkaG~GR~tG~~ia~yLly----~~~~---~~~~eAL~~~~~ 160 (1162)
-|.|||+| ..-.-++.|+++++.--+. -.-.-|||||.||.|| ||++|..=++. .+.. .+..++|.|++.
T Consensus 421 tWPDHGvP-~dPg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGr-TGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRs 498 (600)
T KOG0790|consen 421 TWPDHGVP-SDPGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGR-TGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRS 498 (600)
T ss_pred ecccCCCc-CCccHHHHHHHHhhhhhccccccCcEEEEccCCcCC-cceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHH
Confidence 67899999 4566778899988753111 0113799999999999 99865443331 1111 234678999876
Q ss_pred hCchhhhccCCCCCCChHHHHHHHHHH
Q 001080 161 QAPRELLQLMSPLNPLPSQLRYLQYVS 187 (1162)
Q Consensus 161 ~~~~~~~~~~s~~~~~PSQ~RYv~Yf~ 187 (1162)
+| . +++.+-.|-|||+|--
T Consensus 499 qR-S-------GmVQTEaQYkFiY~Av 517 (600)
T KOG0790|consen 499 QR-S-------GMVQTEAQYKFIYVAV 517 (600)
T ss_pred Hh-c-------chhhhHHhHHHHHHHH
Confidence 54 3 3347889999998643
No 34
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=97.74 E-value=0.00061 Score=79.67 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=15.6
Q ss_pred cCcccCCCcccchhhccc-cccCCcccccc
Q 001080 966 SQPRKNNLKPYHWLKLTR-AMQGSLWAEAQ 994 (1162)
Q Consensus 966 ~~~~~~klK~LhW~KI~~-~~~gTIW~~~~ 994 (1162)
.+.....||.+.-+.+.. ..++.|.++|.
T Consensus 474 ~i~~G~ql~~ve~t~~~~~dgR~~LmaqIR 503 (569)
T KOG3671|consen 474 AIAPGGQLKKVETTALSSGDGRDALMAQIR 503 (569)
T ss_pred ccCccccccceeeccCcCcccHHHHHHHHH
Confidence 445566677666655542 23444555553
No 35
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=97.68 E-value=0.00039 Score=70.44 Aligned_cols=115 Identities=13% Similarity=0.102 Sum_probs=73.2
Q ss_pred CeeeecCceEEeccCCCCCCcchHHhhcChHHHHHHHHHhCCCCcEEEEecCCCCccccccc------cccccCcEEeeC
Q 001080 15 GLLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQ------VLSEYDMTVMDY 88 (1162)
Q Consensus 15 DLtyIT~RIiam~~~fP~~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~------~~s~f~~~v~~~ 88 (1162)
|+.-|++++++. +=+++ ++ ...|.+. +- -.|+||+.......-.+ .....+++++++
T Consensus 1 ~~~~i~~~~~~s--~qlt~-----------~d-~~~L~~~-Gi--ktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~i 63 (135)
T TIGR01244 1 DIRKLTEHLYVS--PQLTK-----------AD-AAQAAQL-GF--KTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQ 63 (135)
T ss_pred CceEcCCCeeEc--CCCCH-----------HH-HHHHHHC-CC--cEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEe
Confidence 345678887776 22221 12 3456543 32 36999986543211111 112368899999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCchHHHHHHHHHHHhcCCCCHHHHHHHH
Q 001080 89 PRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMI 158 (1162)
Q Consensus 89 P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~~~~~~~eAL~~~ 158 (1162)
|+..... +-+.+..|.+.++ .. ..-|++||+.|+ | +|++.+.++.+.|+ +.+++++..
T Consensus 64 Pv~~~~~---~~~~v~~f~~~~~----~~-~~pvL~HC~sG~-R-t~~l~al~~~~~g~--~~~~i~~~~ 121 (135)
T TIGR01244 64 PVTAGDI---TPDDVETFRAAIG----AA-EGPVLAYCRSGT-R-SSLLWGFRQAAEGV--PVEEIVRRA 121 (135)
T ss_pred ecCCCCC---CHHHHHHHHHHHH----hC-CCCEEEEcCCCh-H-HHHHHHHHHHHcCC--CHHHHHHHH
Confidence 8765432 6677777777665 22 356999999999 8 99988888887664 777888865
No 36
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=97.66 E-value=0.00021 Score=82.11 Aligned_cols=88 Identities=17% Similarity=0.142 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhC----------CCcEEEEEecCCCCchHHHHHHHHHHHhcC----CCCHHHH
Q 001080 89 PRHYEGCPLLTMETVHHFLRSSESWLSLG----------HQNVLLMHCERGGWPVLAFMLAALLIYRKQ----FTGEQKT 154 (1162)
Q Consensus 89 P~~d~~~P~p~L~~l~~~~~~i~~wL~~d----------~~nVVvVHCkaG~GR~tG~~ia~yLly~~~----~~~~~eA 154 (1162)
-|.|+|+| .....+++|++.+..|-... ...-|+|||.+|.|| ||+.||...+.... ..+-.++
T Consensus 190 ~Wpd~gvP-~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGR-TGtF~aid~~i~~~~~~~~v~v~~~ 267 (303)
T PHA02742 190 DWPHGGLP-RDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDR-AGAFCAIDICISKYNERAIIPLLSI 267 (303)
T ss_pred CCCCCCcC-CCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCch-hHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 78899997 46778889999888764221 124699999999999 99988877664332 2233456
Q ss_pred HHHHHHhCchhhhccCCCCCCChHHHHHHHHH
Q 001080 155 LDMIYKQAPRELLQLMSPLNPLPSQLRYLQYV 186 (1162)
Q Consensus 155 L~~~~~~~~~~~~~~~s~~~~~PSQ~RYv~Yf 186 (1162)
+..++++|+..+ .+.-|-.|++..
T Consensus 268 V~~lR~qR~~~V--------qt~~QY~F~y~~ 291 (303)
T PHA02742 268 VRDLRKQRHNCL--------SLPQQYIFCYFI 291 (303)
T ss_pred HHHHHhhccccc--------CCHHHHHHHHHH
Confidence 666665554333 688887777643
No 37
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=97.66 E-value=0.00021 Score=82.38 Aligned_cols=85 Identities=12% Similarity=0.089 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhCC---------CcEEEEEecCCCCchHHHHHHHHHHHhc----CCCCHHHHH
Q 001080 89 PRHYEGCPLLTMETVHHFLRSSESWLSLGH---------QNVLLMHCERGGWPVLAFMLAALLIYRK----QFTGEQKTL 155 (1162)
Q Consensus 89 P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~---------~nVVvVHCkaG~GR~tG~~ia~yLly~~----~~~~~~eAL 155 (1162)
-|.|+|.| -....+++|++.+..+-+... ..-+||||.+|.|| ||+.||..++... ..-+..+++
T Consensus 191 ~Wpd~~~P-~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGR-tGtfcaidi~i~~l~~~~~v~v~~~V 268 (312)
T PHA02747 191 EWFEDETP-SDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGK-TGIFCAVDICLNQLVKRKAICLAKTA 268 (312)
T ss_pred CCCCCCCC-CChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcc-hhHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 78889987 356677788887776643211 14699999999999 9998887755332 223345667
Q ss_pred HHHHHhCchhhhccCCCCCCChHHHHHH
Q 001080 156 DMIYKQAPRELLQLMSPLNPLPSQLRYL 183 (1162)
Q Consensus 156 ~~~~~~~~~~~~~~~s~~~~~PSQ~RYv 183 (1162)
..++++|...+ .+..|-.|+
T Consensus 269 ~~lR~qR~~~V--------qt~~QY~F~ 288 (312)
T PHA02747 269 EKIREQRHAGI--------MNFDDYLFI 288 (312)
T ss_pred HHHHhcccccc--------CCHHHHHHH
Confidence 76665554333 788998888
No 38
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=97.60 E-value=0.00029 Score=80.64 Aligned_cols=88 Identities=8% Similarity=0.060 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHH-------hCCCcEEEEEecCCCCchHHHHHHHHHHHhcC----CCCHHHHHHH
Q 001080 89 PRHYEGCPLLTMETVHHFLRSSESWLS-------LGHQNVLLMHCERGGWPVLAFMLAALLIYRKQ----FTGEQKTLDM 157 (1162)
Q Consensus 89 P~~d~~~P~p~L~~l~~~~~~i~~wL~-------~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~~----~~~~~eAL~~ 157 (1162)
-|.|+|.| .....+++|++.+.++.. .+...-+||||.+|.|| ||+.||.-.+-... .-+..+++..
T Consensus 185 ~WPd~gvP-~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGR-TGtFcaiDi~l~~~~~~~~vdi~~~V~~ 262 (298)
T PHA02740 185 AWPADGFS-HDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISS-SAVFCVFDICATEFDKTGMLSIANALKK 262 (298)
T ss_pred CCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCch-hHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 77899988 466778888877765432 12235799999999999 99988876653322 2233345555
Q ss_pred HHHhCchhhhccCCCCCCChHHHHHHHHH
Q 001080 158 IYKQAPRELLQLMSPLNPLPSQLRYLQYV 186 (1162)
Q Consensus 158 ~~~~~~~~~~~~~s~~~~~PSQ~RYv~Yf 186 (1162)
++++|...+ .+..|-.|++..
T Consensus 263 lR~qR~~~V--------qt~~QY~F~y~~ 283 (298)
T PHA02740 263 VRQKKYGCM--------NCLDDYVFCYHL 283 (298)
T ss_pred HHhhCcccc--------CCHHHHHHHHHH
Confidence 555543322 788998877653
No 39
>PLN02727 NAD kinase
Probab=97.56 E-value=0.00016 Score=91.05 Aligned_cols=99 Identities=16% Similarity=0.282 Sum_probs=69.4
Q ss_pred HHhh-cCh--HHHHHHHHHhCCCCcEEEEecCCCCccccc-----cccccccCcEEeeCCCCCCCCCCCCHHHHHHHHHH
Q 001080 38 EEYK-EYL--GGIVGQLREYFPEASFMVFNFREGEHQSQI-----GQVLSEYDMTVMDYPRHYEGCPLLTMETVHHFLRS 109 (1162)
Q Consensus 38 ~~YR-n~i--~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~-----~~~~s~f~~~v~~~P~~d~~~P~p~L~~l~~~~~~ 109 (1162)
.+|| +.+ +++ ++|.++ +- =.|.||+.+....+. .+...+.+++.+|+|..+.+.+ +.+.+.+|.+.
T Consensus 262 ~~~rsgQpspe~l-a~LA~~-Gf--KTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~ap--t~EqVe~fa~~ 335 (986)
T PLN02727 262 AFWRGGQVTEEGL-KWLLEK-GF--KTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAP--SAEQVEKFASL 335 (986)
T ss_pred eEEEeCCCCHHHH-HHHHHC-CC--eEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCC--CHHHHHHHHHH
Confidence 3466 333 445 445442 32 259999887653222 2223457899999998776665 88999999887
Q ss_pred HHHHHHhCCCcEEEEEecCCCCchHHHHHHHHHHHhcC
Q 001080 110 SESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQ 147 (1162)
Q Consensus 110 i~~wL~~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~~ 147 (1162)
+++ .-..-|+|||+.|.+| +|+|+||||.|.-.
T Consensus 336 l~~----slpkPVLvHCKSGarR-AGamvA~yl~~~~~ 368 (986)
T PLN02727 336 VSD----SSKKPIYLHSKEGVWR-TSAMVSRWKQYMTR 368 (986)
T ss_pred HHh----hcCCCEEEECCCCCch-HHHHHHHHHHHHcc
Confidence 744 2235799999999988 99999999998765
No 40
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=97.51 E-value=0.0021 Score=75.32 Aligned_cols=9 Identities=22% Similarity=0.276 Sum_probs=3.8
Q ss_pred ccCCCcccc
Q 001080 969 RKNNLKPYH 977 (1162)
Q Consensus 969 ~~~klK~Lh 977 (1162)
....||.+.
T Consensus 504 qG~~Lk~v~ 512 (569)
T KOG3671|consen 504 QGGQLKKVD 512 (569)
T ss_pred hcccccccc
Confidence 334444433
No 41
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=97.49 E-value=0.00047 Score=79.89 Aligned_cols=88 Identities=15% Similarity=0.087 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHh-------CC--CcEEEEEecCCCCchHHHHHHHHHHHhc----CCCCHHHHH
Q 001080 89 PRHYEGCPLLTMETVHHFLRSSESWLSL-------GH--QNVLLMHCERGGWPVLAFMLAALLIYRK----QFTGEQKTL 155 (1162)
Q Consensus 89 P~~d~~~P~p~L~~l~~~~~~i~~wL~~-------d~--~nVVvVHCkaG~GR~tG~~ia~yLly~~----~~~~~~eAL 155 (1162)
-|.|+|.| .....+++|++.+..|... +. ..-+||||.+|.|| ||+.||..++... ..-+..+++
T Consensus 209 ~Wpd~gvP-~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGR-TGtfcaid~~l~~l~~~~~vdv~~~V 286 (323)
T PHA02746 209 DWPDNGIP-TGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGR-AGTFCAIDNALEQLEKEKEVCLGEIV 286 (323)
T ss_pred CCCCCCcC-CCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCc-chhHHHHHHHHHHHHhcCCCCHHHHH
Confidence 77899987 4577888999988877432 11 25799999999999 9998886554322 222344566
Q ss_pred HHHHHhCchhhhccCCCCCCChHHHHHHHHH
Q 001080 156 DMIYKQAPRELLQLMSPLNPLPSQLRYLQYV 186 (1162)
Q Consensus 156 ~~~~~~~~~~~~~~~s~~~~~PSQ~RYv~Yf 186 (1162)
..++++|...+ .+..|-.|++..
T Consensus 287 ~~lR~qR~~~V--------qt~~QY~F~y~~ 309 (323)
T PHA02746 287 LKIRKQRHSSV--------FLPEQYAFCYKA 309 (323)
T ss_pred HHHHhcccccC--------CCHHHHHHHHHH
Confidence 66655443322 788898887754
No 42
>PHA02738 hypothetical protein; Provisional
Probab=97.40 E-value=0.00074 Score=78.19 Aligned_cols=89 Identities=13% Similarity=0.106 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHh--------CC----CcEEEEEecCCCCchHHHHHHHHHHHhcC----CCCHH
Q 001080 89 PRHYEGCPLLTMETVHHFLRSSESWLSL--------GH----QNVLLMHCERGGWPVLAFMLAALLIYRKQ----FTGEQ 152 (1162)
Q Consensus 89 P~~d~~~P~p~L~~l~~~~~~i~~wL~~--------d~----~nVVvVHCkaG~GR~tG~~ia~yLly~~~----~~~~~ 152 (1162)
-|.|+|.| .....+++|++.+..+-.. +. ..-|||||.+|.|| ||+.||.-++.... .-+-.
T Consensus 186 ~Wpd~gvP-~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGR-tGtFcaidi~i~~~~~~~~vdv~ 263 (320)
T PHA02738 186 AWPDHDVP-KNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGR-TPCYCVVDISISRFDACATVSIP 263 (320)
T ss_pred CCCCCCCC-CCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCCh-hhhhhHHHHHHHHHHhcCCcCHH
Confidence 78889987 3567788888888765321 11 24699999999999 99987766553332 22334
Q ss_pred HHHHHHHHhCchhhhccCCCCCCChHHHHHHHHHH
Q 001080 153 KTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVS 187 (1162)
Q Consensus 153 eAL~~~~~~~~~~~~~~~s~~~~~PSQ~RYv~Yf~ 187 (1162)
+++..++++|...+ .+..|-.|++..-
T Consensus 264 ~~V~~lR~qR~~~v--------qt~~QY~F~y~~l 290 (320)
T PHA02738 264 SIVSSIRNQRYYSL--------FIPFQYFFCYRAV 290 (320)
T ss_pred HHHHHHHhhhhhcc--------CCHHHHHHHHHHH
Confidence 55666655543322 7889988876543
No 43
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.23 E-value=0.0035 Score=64.54 Aligned_cols=127 Identities=13% Similarity=0.072 Sum_probs=75.7
Q ss_pred hhcccCCCCCeeeecCceEEeccCCCCCCcchHHhhcChHHHHHHHHHhCCCCcEEEEecCCCCccccccccccccCcEE
Q 001080 6 KFFYRKPPDGLLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTV 85 (1162)
Q Consensus 6 r~~~~~~dlDLtyIT~RIiam~~~fP~~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f~~~v 85 (1162)
+.+..+.=-+|+.||+-+|... |-- .+.+.|-++++- -+|.|-+-|.-+..+ -+.+.
T Consensus 7 ~~~~~~~~~~~SqIt~sLfl~~-Gva--------------A~~k~~l~~~~I--t~IiNat~E~pn~~l------~~~qy 63 (198)
T KOG1718|consen 7 TLEVQPSIGGMSQITPSLFLSN-GVA--------------ANDKLLLKKRKI--TCIINATTEVPNTSL------PDIQY 63 (198)
T ss_pred ccccCCCccchhhcCcceeEec-ccc--------------ccCHHHHHhcCc--eEEEEcccCCCCccC------CCcee
Confidence 3444455567899999888752 211 122444455554 589999988654222 23445
Q ss_pred eeCCCCCCCCCCCCHHHHHHHH-HHHHHHHHhCCCcEEEEEecCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Q 001080 86 MDYPRHYEGCPLLTMETVHHFL-RSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQ 161 (1162)
Q Consensus 86 ~~~P~~d~~~P~p~L~~l~~~~-~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~~~~~~~eAL~~~~~~ 161 (1162)
+..+..|+-.- .|..-++.+ ..|++--.. +...+|||.||..| ++.++-|||+.... -+..||..++..+
T Consensus 64 ~kv~~~D~p~~--~l~~hfD~vAD~I~~v~~~--gG~TLvHC~AGVSR-SAsLClAYLmK~~~-msLreAy~~vKa~ 134 (198)
T KOG1718|consen 64 MKVPLEDTPQA--RLYDHFDPVADKIHSVIMR--GGKTLVHCVAGVSR-SASLCLAYLMKYHC-MSLREAYHWVKAR 134 (198)
T ss_pred EEEEcccCCcc--hhhhhhhHHHHHHHHHHhc--CCcEEEEEccccch-hHHHHHHHHHHHcc-chHHHHHHHHHhh
Confidence 55565664221 222222222 223332222 35799999999999 99999999995543 4678899887443
No 44
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.20 E-value=0.0016 Score=71.20 Aligned_cols=94 Identities=12% Similarity=0.108 Sum_probs=61.0
Q ss_pred hCCCCcEEEEecCCCCccccccccccc-cCcEEeeCCCCCCCCCCCCHHHHH-HHHHHHHHHHHhCCCcEEEEEecCCCC
Q 001080 54 YFPEASFMVFNFREGEHQSQIGQVLSE-YDMTVMDYPRHYEGCPLLTMETVH-HFLRSSESWLSLGHQNVLLMHCERGGW 131 (1162)
Q Consensus 54 ~h~~~~y~V~NL~~~~~~~~~~~~~s~-f~~~v~~~P~~d~~~P~p~L~~l~-~~~~~i~~wL~~d~~nVVvVHCkaG~G 131 (1162)
+|+. -.|.|.+...-. .+.+ -+++...+|+.||-.. .|..++ +.+..|++-.. ++.-|+|||.||..
T Consensus 195 k~gI--~yviNVTpnlpn-----~fe~~g~f~YkqipisDh~Sq--nls~ffpEAIsfIdeArs--k~cgvLVHClaGIS 263 (343)
T KOG1717|consen 195 KYGI--KYVINVTPNLPN-----NFENNGEFIYKQIPISDHASQ--NLSQFFPEAISFIDEARS--KNCGVLVHCLAGIS 263 (343)
T ss_pred hcCc--eEEEecCCCCcc-----hhhcCCceeEEeeeccchhhh--hhhhhhHHHHHHHHHhhc--cCCcEEEeeecccc
Confidence 4554 247788876422 1211 1233455788887543 444332 44455555443 44679999999999
Q ss_pred chHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 001080 132 PVLAFMLAALLIYRKQFTGEQKTLDMIYK 160 (1162)
Q Consensus 132 R~tG~~ia~yLly~~~~~~~~eAL~~~~~ 160 (1162)
| +.||+.+|||..-.+ +-.+|.+++.+
T Consensus 264 R-SvTvtvaYLMqkl~l-slndAyd~Vk~ 290 (343)
T KOG1717|consen 264 R-SVTVTVAYLMQKLNL-SLNDAYDFVKH 290 (343)
T ss_pred c-hhHHHHHHHHHHhcc-chhhHHHHHHH
Confidence 9 999999999955544 67899999854
No 45
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.17 E-value=0.00093 Score=73.20 Aligned_cols=87 Identities=14% Similarity=0.164 Sum_probs=52.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEecCCCCchHHHHHHHHHHHhcC------CCCHHHHHHH----
Q 001080 89 PRHYEGCPLLTMETVHHFLRSSESWLSLG-HQNVLLMHCERGGWPVLAFMLAALLIYRKQ------FTGEQKTLDM---- 157 (1162)
Q Consensus 89 P~~d~~~P~p~L~~l~~~~~~i~~wL~~d-~~nVVvVHCkaG~GR~tG~~ia~yLly~~~------~~~~~eAL~~---- 157 (1162)
-|.|.+.| ++..|+++.+ +..... ..+.++|||.||.|| ||+.||--.+.+-- ..+.+.+-+.
T Consensus 192 nW~D~~~p--~i~sl~~~~~---sl~~sp~~t~piiVHCSAGvGR-TGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~i 265 (302)
T COG5599 192 NWVDFNVP--DIRSLTEVIH---SLNDSPVRTGPIIVHCSAGVGR-TGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQI 265 (302)
T ss_pred CccccCCc--CHHHHHHHHH---HhhcCcCCCCCEEEEeccCCCC-cceeeeHHHHHhccccccCCCchhhhhhhHHHHH
Confidence 67777776 5555555444 443332 568999999999999 99998877653332 1222222122
Q ss_pred ---HHHhCchhhhccCCCCCCChHHHHHHHHHHHh
Q 001080 158 ---IYKQAPRELLQLMSPLNPLPSQLRYLQYVSRR 189 (1162)
Q Consensus 158 ---~~~~~~~~~~~~~s~~~~~PSQ~RYv~Yf~~l 189 (1162)
++++|++- | ++--|..||+-....
T Consensus 266 V~~LRsQRmkm----V----Qn~~Qf~flY~~~~~ 292 (302)
T COG5599 266 VLSLRSQRMKM----V----QNKTQFKFLYDAFLE 292 (302)
T ss_pred HHHHHHHHHHH----H----HhHHHHHHHHHHHHH
Confidence 34444433 3 666788888765543
No 46
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=97.17 E-value=0.00036 Score=71.89 Aligned_cols=60 Identities=22% Similarity=0.308 Sum_probs=40.4
Q ss_pred cccCcEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCchHHHHHHHHHH
Q 001080 79 SEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLI 143 (1162)
Q Consensus 79 s~f~~~v~~~P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~ia~yLl 143 (1162)
..++...+.+|+.||.+| .-+.+..|++.+.++ ..+-.+++||++|+||+|-+|+.+.|+
T Consensus 89 ~~~g~~Y~Ripitd~~~P--~~~~iD~fi~~v~~~---p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 89 EGNGLRYYRIPITDHQAP--DPEDIDAFINFVKSL---PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HHTT-EEEEEEE-TTS-----HHHHHHHHHHHHTS----TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred hcCCceEEEEeCCCcCCC--CHHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 457888889999999998 777788888777665 235789999999999966666665554
No 47
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=97.17 E-value=0.0009 Score=76.43 Aligned_cols=102 Identities=14% Similarity=0.164 Sum_probs=69.7
Q ss_pred cEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCchHHHHHHHH-HHHhcCCCCHHHHHHHHHHh
Q 001080 83 MTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAAL-LIYRKQFTGEQKTLDMIYKQ 161 (1162)
Q Consensus 83 ~~v~~~P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~ia~y-Lly~~~~~~~~eAL~~~~~~ 161 (1162)
..+..+-|.|||.| -+.+.|..|.+....|+... ...++|||.||.|| ||+.||-- |++.-......+-...+...
T Consensus 253 r~f~y~~wPd~gvp-~~~~sl~~f~~~~r~~~~~~-~~p~iVhCSAGVgR-TGTFiald~LLqq~~~~~~vdi~~iv~~l 329 (374)
T KOG0791|consen 253 RHFHYTAWPDFGVP-SSTESLLQFVRMVRQSLDTS-KGPTIVHCSAGVGR-TGTFIALDRLLQQIDSEETVDIFGVVLEL 329 (374)
T ss_pred EEEEEeeccccCCC-CCchhHHHHHHHHHhhcccC-CCceeEEeeccccc-ccchHhHHHHHHHhcccccccHHHHHHHh
Confidence 34555689999998 67888999999999999887 67999999999999 99988876 44443333233344444433
Q ss_pred CchhhhccCCCCCCChHHHHHHHHHHH-hhcC
Q 001080 162 APRELLQLMSPLNPLPSQLRYLQYVSR-RNVG 192 (1162)
Q Consensus 162 ~~~~~~~~~s~~~~~PSQ~RYv~Yf~~-ll~~ 192 (1162)
|..+ ...| ++--|.-||++-.. .+.|
T Consensus 330 R~~R-~~mV----qte~Qyvfl~~c~~~~l~~ 356 (374)
T KOG0791|consen 330 RSAR-MLMV----QTEDQYVFLHQCVLESLQG 356 (374)
T ss_pred hhcc-cccc----chHHHHHHHHHHHHHHHhC
Confidence 2221 1233 67778778877543 4444
No 48
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=96.56 E-value=0.0046 Score=64.57 Aligned_cols=94 Identities=15% Similarity=0.136 Sum_probs=45.2
Q ss_pred HHHHHHhCCCCcEEEEecCCCCccccccccccccCcEEeeCCCCCCCCCC-CCHHH-------HH---------------
Q 001080 48 VGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCPL-LTMET-------VH--------------- 104 (1162)
Q Consensus 48 ~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f~~~v~~~P~~d~~~P~-p~L~~-------l~--------------- 104 (1162)
.++|. +++- -.|+.|+.......-.+.+. -+.+++++|......-. -.+.. ..
T Consensus 35 ~~~L~-~lgI--~tIiDLRs~~E~~~~p~~~~-~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~ 110 (164)
T PF13350_consen 35 LERLR-ELGI--RTIIDLRSPTERERAPDPLI-DGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYREMLESYA 110 (164)
T ss_dssp HHHHH-HTT----EEEE-S-HHHHHHHS-----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHHGGGSTH
T ss_pred HHHHH-hCCC--CEEEECCCccccccCCCCCc-CCceeeeecccccccccccccccccccccchhhHHHHHHHHHHHhhh
Confidence 56777 5554 47999988765322222122 25566666655543320 00110 01
Q ss_pred HHHHHHHHHHHhCCCcEEEEEecCCCCchHHHHHHHHHHHhcC
Q 001080 105 HFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQ 147 (1162)
Q Consensus 105 ~~~~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~~ 147 (1162)
..++.+-.+|.... +-|++||.+||-| ||+++|-+|.-+|.
T Consensus 111 ~~~~~~~~~l~~~~-~p~l~HC~aGKDR-TG~~~alll~~lGV 151 (164)
T PF13350_consen 111 EAYRKIFELLADAP-GPVLFHCTAGKDR-TGVVAALLLSLLGV 151 (164)
T ss_dssp HHHHHHHHHHH-TT---EEEE-SSSSSH-HHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccCC-CcEEEECCCCCcc-HHHHHHHHHHHcCC
Confidence 11223333555555 7999999999998 99999988887776
No 49
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.13 E-value=0.017 Score=68.89 Aligned_cols=86 Identities=20% Similarity=0.221 Sum_probs=50.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEecCCCCchHHHHHHHHHHHhcC-----CCCHHHHHHHHHHhC
Q 001080 89 PRHYEGCPLLTMETVHHFLRSSESWLSLG-HQNVLLMHCERGGWPVLAFMLAALLIYRKQ-----FTGEQKTLDMIYKQA 162 (1162)
Q Consensus 89 P~~d~~~P~p~L~~l~~~~~~i~~wL~~d-~~nVVvVHCkaG~GR~tG~~ia~yLly~~~-----~~~~~eAL~~~~~~~ 162 (1162)
-|.|++.| -....++.+++. ..+... ...-++|||.+|.|| ||++++...+.... .....+.+..++.+|
T Consensus 271 ~WPd~~~p-~~~~~~l~~~~~--~~~~~~~~~~P~vVhcsaG~gR-tgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR 346 (415)
T KOG0789|consen 271 NWPDHGAP-DSVKSILPLLRQ--SVLELRPKQEPIEVHCSAGAGR-AGTLVLIEHALIELQGPEGEPPIDEILREIRYQR 346 (415)
T ss_pred CCccccCC-cchHHHHHHHHh--hhhhhcCCCCCeEEECCCCCCc-cchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHh
Confidence 56677776 234445555544 223333 345799999999999 99988755333332 222445555454443
Q ss_pred chhhhccCCCCCCChHHHHHHHHH
Q 001080 163 PRELLQLMSPLNPLPSQLRYLQYV 186 (1162)
Q Consensus 163 ~~~~~~~~s~~~~~PSQ~RYv~Yf 186 (1162)
...+ ++.-|-.|++..
T Consensus 347 ~~~v--------qt~~Qy~f~~~~ 362 (415)
T KOG0789|consen 347 PGAV--------QSPLQYLFIYAA 362 (415)
T ss_pred hhcc--------cchhHHHHHHHH
Confidence 3322 677887777643
No 50
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=96.05 E-value=0.055 Score=59.01 Aligned_cols=95 Identities=14% Similarity=0.133 Sum_probs=59.5
Q ss_pred HHHHHHhCCCCcEEEEecCCCCccccccccccccCcEEeeCCCCCCC----CCCCCHHHHHHHHHHHHHHHHhCCCcEEE
Q 001080 48 VGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEG----CPLLTMETVHHFLRSSESWLSLGHQNVLL 123 (1162)
Q Consensus 48 ~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f~~~v~~~P~~d~~----~P~p~L~~l~~~~~~i~~wL~~d~~nVVv 123 (1162)
..||++-|- .-|.-||.|.|-...-..+..-+++++++.+.-.- -| ......+.++..-..|-.-.+.-++
T Consensus 78 fsFL~~L~L---ksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P--~~~~~~~~i~~~l~~lld~~N~P~L 152 (249)
T KOG1572|consen 78 FSFLKTLHL---KSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEP--FVNIPDHSIRKALKVLLDKRNYPIL 152 (249)
T ss_pred hHHHHHhhh---heEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCC--CCCChHHHHHHHHHHHhcccCCceE
Confidence 578888664 34777888865322222355567777777554433 22 2333333333333334444567899
Q ss_pred EEecCCCCchHHHHHHHHHHHhcCC
Q 001080 124 MHCERGGWPVLAFMLAALLIYRKQF 148 (1162)
Q Consensus 124 VHCkaG~GR~tG~~ia~yLly~~~~ 148 (1162)
|||+.|+-| ||++|+|+=-.++++
T Consensus 153 ihc~rGkhR-tg~lVgclRklq~W~ 176 (249)
T KOG1572|consen 153 IHCKRGKHR-TGCLVGCLRKLQNWS 176 (249)
T ss_pred EecCCCCcc-hhhhHHHHHHHhccc
Confidence 999999988 999999997666653
No 51
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=95.90 E-value=0.021 Score=55.94 Aligned_cols=96 Identities=20% Similarity=0.225 Sum_probs=51.4
Q ss_pred CeeeecCceEEeccCCCCCCcchHHhhcChHHHHHHHHHhCCCCcEEEEecCCCCcc------ccccccccccCcEEeeC
Q 001080 15 GLLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQ------SQIGQVLSEYDMTVMDY 88 (1162)
Q Consensus 15 DLtyIT~RIiam~~~fP~~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NL~~~~~~------~~~~~~~s~f~~~v~~~ 88 (1162)
|+..|++++.+. +-++. ++ +..|.+ .+- =.|.||+..... ..+......+|++.+++
T Consensus 1 di~~i~~~~~vs--~Q~~~-----------~d-~~~la~-~Gf--ktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~i 63 (110)
T PF04273_consen 1 DIRQISDDLSVS--GQPSP-----------ED-LAQLAA-QGF--KTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHI 63 (110)
T ss_dssp --EEEETTEEEE--CS--H-----------HH-HHHHHH-CT----EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE-
T ss_pred CCEecCCCeEEC--CCCCH-----------HH-HHHHHH-CCC--cEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEe
Confidence 788999999988 44432 12 234443 222 248899855432 12234456799999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCchHHHH
Q 001080 89 PRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFM 137 (1162)
Q Consensus 89 P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~ 137 (1162)
|+...+ ++.+.+..|.+.|++ .+ .-|++||+.|. | .+.+
T Consensus 64 Pv~~~~---~~~~~v~~f~~~l~~----~~-~Pvl~hC~sG~-R-a~~l 102 (110)
T PF04273_consen 64 PVDGGA---ITEEDVEAFADALES----LP-KPVLAHCRSGT-R-ASAL 102 (110)
T ss_dssp ---TTT-----HHHHHHHHHHHHT----TT-TSEEEE-SCSH-H-HHHH
T ss_pred ecCCCC---CCHHHHHHHHHHHHh----CC-CCEEEECCCCh-h-HHHH
Confidence 988754 378888888876664 23 35999999887 6 4433
No 52
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=95.60 E-value=0.023 Score=63.55 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=29.3
Q ss_pred HHhCCCcEEEEEecCCCCchHHHHHHHHHHHhcCCCC
Q 001080 114 LSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTG 150 (1162)
Q Consensus 114 L~~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~~~~~ 150 (1162)
+....+--|+|||++|+-| ||+++|||+...+....
T Consensus 131 ~~~~e~~PvL~HC~~GkdR-TGl~~al~r~~~~~~~~ 166 (249)
T COG2365 131 LADAENGPVLIHCTAGKDR-TGLVAALYRKLVGGSDE 166 (249)
T ss_pred HhhcccCCEEEecCCCCcc-hHHHHHHHHHHhCCchh
Confidence 3333347799999999988 99999999999987544
No 53
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=95.36 E-value=0.019 Score=69.78 Aligned_cols=88 Identities=16% Similarity=0.311 Sum_probs=64.5
Q ss_pred eeC-CCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCchHHHHHHHHHHHhcCCCCHH-----HHHHHHH
Q 001080 86 MDY-PRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQ-----KTLDMIY 159 (1162)
Q Consensus 86 ~~~-P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~~~~~~~-----eAL~~~~ 159 (1162)
+|| -|.++|.|. .-.-|++|-+.+.....- ...-|+|||.+|-|| ||+.|..=|+..++..++. .+|+.++
T Consensus 895 FHfLSWp~egvPa-sarslLdFRRKVNK~YRG-RScpIiVH~sdGaGR-TG~YiliDmvl~Rm~kGakeIDIaATlEHlR 971 (1004)
T KOG0793|consen 895 FHFLSWPDEGVPA-SARSLLDFRRKVNKCYRG-RSCPIIVHCSDGAGR-TGTYILIDMVLNRMAKGAKEIDIAATLEHLR 971 (1004)
T ss_pred eeeecccccCCcc-chHHHHHHHHHhhhhccC-CCCceEEEccCCCCc-cceeeeHHHHHHHHhccchhhhHHHHHHHHh
Confidence 444 788999984 677889999988877654 468899999999999 9998888777777666654 3677776
Q ss_pred HhCchhhhccCCCCCCChHHHHHHH
Q 001080 160 KQAPRELLQLMSPLNPLPSQLRYLQ 184 (1162)
Q Consensus 160 ~~~~~~~~~~~s~~~~~PSQ~RYv~ 184 (1162)
.+|. +. +.+--|..|+.
T Consensus 972 DQR~-Gm-------VaTkdQFef~l 988 (1004)
T KOG0793|consen 972 DQRP-GM-------VATKDQFEFAL 988 (1004)
T ss_pred hcCC-cc-------eeehhhhHHHH
Confidence 6553 22 25656666553
No 54
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=95.16 E-value=0.19 Score=51.39 Aligned_cols=106 Identities=17% Similarity=0.218 Sum_probs=64.2
Q ss_pred HHHHHHHhCCCCcEEEEecCCCCccccccccccccCcE--EeeCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEE
Q 001080 47 IVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMT--VMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLM 124 (1162)
Q Consensus 47 V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f~~~--v~~~P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~nVVvV 124 (1162)
++.....+|+- .-||-=+.-+.|.....++..+-+.. +-|.-+.|.|+-.+.-+.+..++..+++|= ...-++|
T Consensus 23 ~~ae~~~rh~~-t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp---~~apllI 98 (172)
T COG5350 23 VIAETAARHGP-THMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWP---RFAPLLI 98 (172)
T ss_pred HHHHHHhhcCC-ceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCc---cccceee
Confidence 34566667764 35655555455544443333222222 223344556655568888888888888994 4456999
Q ss_pred EecCCCCchHHH-HHHHHHHHhcCCCCHHHHHHHH
Q 001080 125 HCERGGWPVLAF-MLAALLIYRKQFTGEQKTLDMI 158 (1162)
Q Consensus 125 HCkaG~GR~tG~-~ia~yLly~~~~~~~~eAL~~~ 158 (1162)
||.+|.+|.|+. +++++-++..+ ++.|+-+.+
T Consensus 99 HC~aGISRStA~A~i~a~ala~~~--de~ela~~L 131 (172)
T COG5350 99 HCYAGISRSTAAALIAALALAPDM--DETELAERL 131 (172)
T ss_pred eeccccccchHHHHHHHHhhcccc--ChHHHHHHH
Confidence 999999996654 56666665555 555554444
No 55
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=94.81 E-value=0.036 Score=71.34 Aligned_cols=111 Identities=19% Similarity=0.307 Sum_probs=63.7
Q ss_pred cEEEEecCCCCccccccccccccCcEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCchHHHHH
Q 001080 59 SFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFML 138 (1162)
Q Consensus 59 ~y~V~NL~~~~~~~~~~~~~s~f~~~v~~~P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~i 138 (1162)
.|+|-|..++.++. +.. .++..|| -++-++..-..+..+......|-+.+.+.-++|||.+|.|| +|+.|
T Consensus 967 ~f~i~n~~~~~~r~-----v~q--fq~~~WP--~~~~~p~~~~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~r-sg~f~ 1036 (1087)
T KOG4228|consen 967 EFGVTNEREKQSRT-----VRQ--FQFTGWP--EYGKPPQSKGPISKIPSVASKWQQLGADGPIIVHCLNGVGR-TGTFC 1036 (1087)
T ss_pred hheeeeccccCceE-----EEE--EEecCCc--ccCcCCCCcchhhhHHHHHHHHHhhcCCCCEEEEEcCCCcc-eeehH
Confidence 37777777554321 111 1122233 23333334455666677777888888788999999999999 89888
Q ss_pred HHHHHHhcC-CCCH---HHHHHHHHHhCchhhhccCCCCCCChHHHHHHHHHH
Q 001080 139 AALLIYRKQ-FTGE---QKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVS 187 (1162)
Q Consensus 139 a~yLly~~~-~~~~---~eAL~~~~~~~~~~~~~~~s~~~~~PSQ~RYv~Yf~ 187 (1162)
|+-++...+ ..+. -.++.+++.+++ .. ..+--|-.|++-..
T Consensus 1037 ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp-~m-------v~t~~QY~fcYdv~ 1081 (1087)
T KOG4228|consen 1037 AISILLERMRKEGVVDVFQTVKTLRFQRP-GM-------VDTSDQYQFCYDVA 1081 (1087)
T ss_pred HHHHHHHHHhhcCceeeehhhhhhhhcCc-cc-------cCcHHHHHHHHHHH
Confidence 877775554 2221 123333332222 11 25667777776443
No 56
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=94.28 E-value=0.086 Score=53.85 Aligned_cols=65 Identities=12% Similarity=0.100 Sum_probs=42.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEecCCCCc---hHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 001080 92 YEGCPLLTMETVHHFLRSSESWLSLG-HQNVLLMHCERGGWP---VLAFMLAALLIYRKQFTGEQKTLDMIY 159 (1162)
Q Consensus 92 d~~~P~p~L~~l~~~~~~i~~wL~~d-~~nVVvVHCkaG~GR---~tG~~ia~yLly~~~~~~~~eAL~~~~ 159 (1162)
|.|. ++|.+|++||..+++-|+.. .++..+|||.+...+ -++++||||++....+ ++++|++.+.
T Consensus 40 DFGP--lnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~-spe~A~~~l~ 108 (141)
T PF14671_consen 40 DFGP--LNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGM-SPEEAYKPLA 108 (141)
T ss_dssp --------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS----HHHHHHHHT
T ss_pred cCCC--ccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 4453 59999999999999999883 236788888765332 3689999998865554 7789998773
No 57
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=93.66 E-value=0.049 Score=70.17 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=37.1
Q ss_pred EEeeC-CCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCchHHHHHH
Q 001080 84 TVMDY-PRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLA 139 (1162)
Q Consensus 84 ~v~~~-P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~ia 139 (1162)
+-+|| -|.|||.|. .-.-|+.|++.+..+-.- ...-+||||.||.|| ||+.|+
T Consensus 696 ~qfhFt~Wpd~gvPe-~~t~lL~f~rrvk~~~p~-~aGPiVVHCSAGvGR-TG~fi~ 749 (1087)
T KOG4228|consen 696 RQFHFTAWPDHGVPE-TPTGLLKFRRRVKTFNPP-DAGPIVVHCSAGVGR-TGCFIV 749 (1087)
T ss_pred eeeeeccCCCCCCcc-cchHHHHHHHHhccCCCc-CCCCEEEECCCCCCC-cceEEE
Confidence 34454 688999983 445677888877765411 225699999999999 998543
No 58
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=90.95 E-value=4.7 Score=47.38 Aligned_cols=8 Identities=13% Similarity=0.447 Sum_probs=3.5
Q ss_pred chhhhccc
Q 001080 1052 CEIMLTKV 1059 (1162)
Q Consensus 1052 I~I~L~k~ 1059 (1162)
..|+++++
T Consensus 490 atiLsRRi 497 (518)
T KOG1830|consen 490 ATILSRRI 497 (518)
T ss_pred HHHHHHHH
Confidence 34444443
No 59
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=80.54 E-value=4.3 Score=47.24 Aligned_cols=105 Identities=14% Similarity=0.160 Sum_probs=58.5
Q ss_pred eeecCceEEeccCCC--CCCcchHHhhcChHHHHHHHHHhCCCCcEEEEecCCCCccccccccccccCcEEeeCCCCCCC
Q 001080 17 LEISERVFVFDCCFT--TDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEG 94 (1162)
Q Consensus 17 tyIT~RIiam~~~fP--~~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f~~~v~~~P~~d~~ 94 (1162)
.-+...|+.| |+. ..++.+..-.-..+++.+.|++ + ++.|+..++... |. .-|++ |
T Consensus 89 ~~~~~eLv~~--G~d~~v~~~~~~~~~is~~el~~~l~~---~-~~vlIDVR~~~E----------~~--~GhI~----G 146 (314)
T PRK00142 89 VKVRKEIVAL--GLDDDIDPLENVGTYLKPKEVNELLDD---P-DVVFIDMRNDYE----------YE--IGHFE----N 146 (314)
T ss_pred eeeeeeeeec--CCCCCCCccccCCcccCHHHHHHHhcC---C-CeEEEECCCHHH----------Hh--cCcCC----C
Confidence 5566778888 664 2333223233445666666653 2 488888876522 21 12332 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCchHHHHHHHHHHHhc
Q 001080 95 CPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1162)
Q Consensus 95 ~P~p~L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~ 146 (1162)
+-.+++..+.++...+++.+...++.-|||||.+|. | +.++++||...|
T Consensus 147 Ai~ip~~~~~~~~~~l~~~~~~~kdk~IvvyC~~G~-R--s~~aa~~L~~~G 195 (314)
T PRK00142 147 AIEPDIETFREFPPWVEENLDPLKDKKVVMYCTGGI-R--CEKASAWMKHEG 195 (314)
T ss_pred CEeCCHHHhhhhHHHHHHhcCCCCcCeEEEECCCCc-H--HHHHHHHHHHcC
Confidence 222356666655554444444456678999997664 5 345677776443
No 60
>PRK01415 hypothetical protein; Validated
Probab=79.18 E-value=7.6 Score=43.62 Aligned_cols=105 Identities=10% Similarity=0.019 Sum_probs=59.2
Q ss_pred eeecCceEEeccCCCCCCcchH-HhhcChHHHHHHHHHhCCCCcEEEEecCCCCccccccccccccCcEEeeCCCCCCCC
Q 001080 17 LEISERVFVFDCCFTTDILEEE-EYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGC 95 (1162)
Q Consensus 17 tyIT~RIiam~~~fP~~~~~e~-~YRn~i~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f~~~v~~~P~~d~~~ 95 (1162)
.-|-..|+.| +.+.....+. ...-..+++.++|+. . ++.|+..++... |. +-+++ |+
T Consensus 90 vr~k~eiV~~--g~~~~~~~~~~g~~i~p~e~~~ll~~---~-~~vvIDVRn~~E----------~~--~Ghi~----gA 147 (247)
T PRK01415 90 VRLKKEIVAM--NVDDLNVDLFKGEYIEPKDWDEFITK---Q-DVIVIDTRNDYE----------VE--VGTFK----SA 147 (247)
T ss_pred EEeeceEEec--CCCCCCccccCccccCHHHHHHHHhC---C-CcEEEECCCHHH----------Hh--cCCcC----CC
Confidence 3456788898 5543221111 111333566667763 2 478888887632 21 12332 33
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCchHHHHHHHHHHHhc
Q 001080 96 PLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1162)
Q Consensus 96 P~p~L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~ 146 (1162)
-.++++.+.++...++..+..+.+.-|+|+|.+|. | +..+|++|...|
T Consensus 148 inip~~~f~e~~~~~~~~~~~~k~k~Iv~yCtgGi-R--s~kAa~~L~~~G 195 (247)
T PRK01415 148 INPNTKTFKQFPAWVQQNQELLKGKKIAMVCTGGI-R--CEKSTSLLKSIG 195 (247)
T ss_pred CCCChHHHhhhHHHHhhhhhhcCCCeEEEECCCCh-H--HHHHHHHHHHcC
Confidence 22456666665554444455566778999997664 5 566777877554
No 61
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=77.92 E-value=4.8 Score=42.90 Aligned_cols=109 Identities=11% Similarity=0.101 Sum_probs=67.0
Q ss_pred chhhhcccCCCCCe-eeecCceEEeccCCCCCCcchHHhhcChHHHHHHHHHhCCCCcEEEEecCCCCcccccccccccc
Q 001080 3 LFRKFFYRKPPDGL-LEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEY 81 (1162)
Q Consensus 3 l~rr~~~~~~dlDL-tyIT~RIiam~~~fP~~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f 81 (1162)
++|++..+|..++. +|=..++-.+ .....+..|....+.|++..+. ....|..-...+.......+.+.
T Consensus 50 ~~~~i~~~Gheig~Ht~~H~~~~~~---------~~~~~~~ei~~~~~~l~~~~g~-~~~~fr~P~G~~~~~~~~~l~~~ 119 (191)
T TIGR02764 50 LVKEIVKDGHEIGSHGYRHKNYTTL---------EDEKIKKDILRAQEIIEKLTGK-KPTLFRPPSGAFNKAVLKAAESL 119 (191)
T ss_pred HHHHHHhCCCEEEECCcCCCCcccC---------CHHHHHHHHHHHHHHHHHHhCC-CCCEEECCCcCCCHHHHHHHHHc
Confidence 57888888877766 4444443322 3555667777777788776665 35666666666665556667788
Q ss_pred CcEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEe
Q 001080 82 DMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHC 126 (1162)
Q Consensus 82 ~~~v~~~P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~nVVvVHC 126 (1162)
|.+++.|-..-.++-...-+.+ ++.+...+. ++.||++||
T Consensus 120 G~~~v~w~~~~~D~~~~~~~~i---~~~~~~~~~--~g~Iil~Hd 159 (191)
T TIGR02764 120 GYTVVHWSVDSRDWKNPGVESI---VDRVVKNTK--PGDIILLHA 159 (191)
T ss_pred CCeEEEecCCCCccCCCCHHHH---HHHHHhcCC--CCCEEEEeC
Confidence 8888776444333322244433 333334443 458999999
No 62
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=77.17 E-value=23 Score=35.06 Aligned_cols=118 Identities=11% Similarity=0.123 Sum_probs=64.9
Q ss_pred eEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccc-eeecccCceEEEEccCCcccCcEEEEEE
Q 001080 203 TLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLV-RHYKQADCELVKIDIHCHIQGDVVLECI 281 (1162)
Q Consensus 203 ~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~-r~y~~~d~~~i~~~i~~~v~GDV~I~~~ 281 (1162)
.++-|.-++++. ..+.|.||+.|+-.+. ...+.|....++. -.|. +.|.|++.- -...+.|+||
T Consensus 2 ~v~v~~A~~L~~--~~g~~dpyv~v~~~~~--------~~~~kT~v~~~t~nP~Wn----e~f~f~~~~-~~~~l~~~v~ 66 (126)
T cd08678 2 LVKNIKANGLSE--AAGSSNPYCVLEMDEP--------PQKYQSSTQKNTSNPFWD----EHFLFELSP-NSKELLFEVY 66 (126)
T ss_pred EEEEEEecCCCC--CCCCcCCEEEEEECCC--------CcEEEeEEEecCCCCccC----ceEEEEeCC-CCCEEEEEEE
Confidence 455566667776 4467999999986431 1123332221111 1221 235565531 2457889999
Q ss_pred eCCCccccCceEEEEEeecccccCC---EEEeccCCccccccCCCCCCCCcEEEEEEeccC
Q 001080 282 SLDSDQEREEMMFRVMFNTAFIRSN---ILMLNRDEIDILWNSKDLFSKEFRAEVLFSEMD 339 (1162)
Q Consensus 282 h~~~~~~~~~~mFr~~FnT~FI~~n---~L~l~k~eLD~~~~~k~~fp~dF~Vel~F~~~~ 339 (1162)
+.+. .++...|.++.|...-|..+ ...|.. ......+....-...++|.|.+..
T Consensus 67 d~~~-~~~~~~lG~~~i~l~~l~~~~~~~~~~~L---~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 67 DNGK-KSDSKFLGLAIVPFDELRKNPSGRQIFPL---QGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred ECCC-CCCCceEEEEEEeHHHhccCCceeEEEEe---cCCCCCCCCcceEEEEEEEEeccc
Confidence 9875 34567889999988877632 122222 111001234556677888886543
No 63
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=76.33 E-value=30 Score=33.85 Aligned_cols=88 Identities=13% Similarity=0.167 Sum_probs=54.2
Q ss_pred eeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCCcccCcEEEEE
Q 001080 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCHIQGDVVLEC 280 (1162)
Q Consensus 202 l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~~v~GDV~I~~ 280 (1162)
|+++=+.-++++..+..+.|.||++|+..+ +.+|.|....++.. .|. +.|.|.+.- ....+.|++
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~---------~~~~kT~~~~~t~nP~Wn----e~f~f~v~~-~~~~l~~~v 67 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGG---------KTVYKSKTIYKNLNPVWD----EKFTLPIED-VTQPLYIKV 67 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECC---------EEEEEeeeccCCCCCccc----eeEEEEecC-CCCeEEEEE
Confidence 344445556677777777899999998653 34565543322222 221 235555432 356788899
Q ss_pred EeCCCccccCceEEEEEeeccccc
Q 001080 281 ISLDSDQEREEMMFRVMFNTAFIR 304 (1162)
Q Consensus 281 ~h~~~~~~~~~~mFr~~FnT~FI~ 304 (1162)
|+.+. ..+...|.++.|...-+.
T Consensus 68 ~D~d~-~~~~~~iG~~~~~l~~l~ 90 (121)
T cd04042 68 FDYDR-GLTDDFMGSAFVDLSTLE 90 (121)
T ss_pred EeCCC-CCCCcceEEEEEEHHHcC
Confidence 98764 335667888888777665
No 64
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=75.66 E-value=11 Score=35.69 Aligned_cols=79 Identities=19% Similarity=0.190 Sum_probs=41.1
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCCCccccccccccccCcEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEE
Q 001080 45 GGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLM 124 (1162)
Q Consensus 45 ~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f~~~v~~~P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~nVVvV 124 (1162)
+++.+.++ .+ +++|+..++... |. .-|++ .-.+. +++.+..+...+..++..+.+..|||
T Consensus 7 ~~l~~~~~---~~-~~~iiDvR~~~e----------~~--~ghi~-gA~~i---p~~~~~~~~~~~~~~~~~~~~~~ivv 66 (101)
T cd01518 7 AEWNELLE---DP-EVVLLDVRNDYE----------YD--IGHFK-GAVNP---DVDTFREFPFWLDENLDLLKGKKVLM 66 (101)
T ss_pred HHHHHHHc---CC-CEEEEEcCChhh----------hh--cCEec-cccCC---CcccHhHhHHHHHhhhhhcCCCEEEE
Confidence 44555554 23 488999987632 21 11222 11122 24444444444444444466678999
Q ss_pred EecCCCCchHHHHHHHHHHHhc
Q 001080 125 HCERGGWPVLAFMLAALLIYRK 146 (1162)
Q Consensus 125 HCkaG~GR~tG~~ia~yLly~~ 146 (1162)
+|..|. | ++ .+|.+|...|
T Consensus 67 yC~~G~-r-s~-~a~~~L~~~G 85 (101)
T cd01518 67 YCTGGI-R-CE-KASAYLKERG 85 (101)
T ss_pred ECCCch-h-HH-HHHHHHHHhC
Confidence 998764 5 54 3455555443
No 65
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=74.60 E-value=24 Score=34.83 Aligned_cols=83 Identities=12% Similarity=0.040 Sum_probs=48.9
Q ss_pred EEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCC-----cccCcEEEEE
Q 001080 207 VILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHC-----HIQGDVVLEC 280 (1162)
Q Consensus 207 IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~-----~v~GDV~I~~ 280 (1162)
+.-++++..+..|.|.||++|+-.. ..+.|....++.. .|. +.|.|.+.. .-...+.|.|
T Consensus 6 ~~A~~L~~~d~~g~~dpYv~v~l~~----------~~~kT~v~~~t~nP~Wn----e~f~F~v~~~~~~~~~~~~l~~~v 71 (126)
T cd08682 6 LQARGLLCKGKSGTNDAYVIIQLGK----------EKYSTSVKEKTTSPVWK----EECSFELPGLLSGNGNRATLQLTV 71 (126)
T ss_pred EECcCCcCCCCCcCCCceEEEEECC----------eeeeeeeecCCCCCEeC----ceEEEEecCcccCCCcCCEEEEEE
Confidence 3445566666667899999998653 2233432222211 232 235565543 2345678889
Q ss_pred EeCCCccccCceEEEEEeeccccc
Q 001080 281 ISLDSDQEREEMMFRVMFNTAFIR 304 (1162)
Q Consensus 281 ~h~~~~~~~~~~mFr~~FnT~FI~ 304 (1162)
|+.+. .++...|.++.|...=+.
T Consensus 72 ~d~~~-~~~d~~iG~~~i~l~~l~ 94 (126)
T cd08682 72 MHRNL-LGLDKFLGQVSIPLNDLD 94 (126)
T ss_pred EEccc-cCCCceeEEEEEEHHHhh
Confidence 98864 345678889888776654
No 66
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=73.93 E-value=12 Score=47.20 Aligned_cols=11 Identities=9% Similarity=-0.100 Sum_probs=5.6
Q ss_pred EEEeccCCccc
Q 001080 307 ILMLNRDEIDI 317 (1162)
Q Consensus 307 ~L~l~k~eLD~ 317 (1162)
++.++..+||.
T Consensus 114 Qye~t~lgld~ 124 (830)
T KOG1923|consen 114 QYEATHLGLDK 124 (830)
T ss_pred hhHHHHHhhhh
Confidence 44555555554
No 67
>PRK05320 rhodanese superfamily protein; Provisional
Probab=72.59 E-value=8.6 Score=43.47 Aligned_cols=85 Identities=11% Similarity=0.044 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHhCC--CCcEEEEecCCCCccccccccccccCcEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCc
Q 001080 43 YLGGIVGQLREYFP--EASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQN 120 (1162)
Q Consensus 43 ~i~~V~~~L~~~h~--~~~y~V~NL~~~~~~~~~~~~~s~f~~~v~~~P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~n 120 (1162)
...++.++++..+. +.+..|...++... |+ .-+++ |+-.++++.+.++...+..++....+.
T Consensus 113 s~~el~~~l~~~~~~~~~~~vlIDVR~~~E----------~~--~Ghi~----GAiniPl~~f~~~~~~l~~~~~~~kdk 176 (257)
T PRK05320 113 DAATLKRWLDQGHDDAGRPVVMLDTRNAFE----------VD--VGTFD----GALDYRIDKFTEFPEALAAHRADLAGK 176 (257)
T ss_pred CHHHHHHHHhccccccCCCeEEEECCCHHH----------Hc--cCccC----CCEeCChhHhhhhHHHHHhhhhhcCCC
Confidence 34556666665431 11377888877632 21 12232 222235676666655455554433456
Q ss_pred EEEEEecCCCCchHHHHHHHHHHHhc
Q 001080 121 VLLMHCERGGWPVLAFMLAALLIYRK 146 (1162)
Q Consensus 121 VVvVHCkaG~GR~tG~~ia~yLly~~ 146 (1162)
-|+|+|.+|. | +..++.+|...|
T Consensus 177 ~IvvyC~~G~-R--s~~Aa~~L~~~G 199 (257)
T PRK05320 177 TVVSFCTGGI-R--CEKAAIHMQEVG 199 (257)
T ss_pred eEEEECCCCH-H--HHHHHHHHHHcC
Confidence 7999998775 5 555677776443
No 68
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=72.58 E-value=16 Score=41.77 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=66.2
Q ss_pred ecCceEEeccCCCCCCcch---HHhhcChHHHHHHHHHhCCCCcEEEEecCCCCccccccccccccCcEEeeCCCCCCCC
Q 001080 19 ISERVFVFDCCFTTDILEE---EEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGC 95 (1162)
Q Consensus 19 IT~RIiam~~~fP~~~~~e---~~YRn~i~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f~~~v~~~P~~d~~~ 95 (1162)
+-.+|++| +.+.+..+. +.|-.. +++-.+|. |.+.+|+..+.. |++.+=+| .|+
T Consensus 92 ~kkEIV~l--g~~ddv~p~~~vG~yl~p-~~wn~~l~----D~~~vviDtRN~------------YE~~iG~F----~gA 148 (308)
T COG1054 92 LKKEIVAL--GVEDDVDPLENVGTYLSP-KDWNELLS----DPDVVVIDTRND------------YEVAIGHF----EGA 148 (308)
T ss_pred ehhhheec--CCCCCcCccccccCccCH-HHHHHHhc----CCCeEEEEcCcc------------eeEeeeee----cCc
Confidence 45789999 666533322 344333 33333333 224677766554 33344344 455
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCchHHHHHHHHHHHhcC
Q 001080 96 PLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQ 147 (1162)
Q Consensus 96 P~p~L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~~ 147 (1162)
-.|..+...+|-..+++++....+..||+-|.||- | .=-.++||+..|.
T Consensus 149 v~p~~~tFrefP~~v~~~~~~~~~KkVvmyCTGGI-R--CEKas~~m~~~GF 197 (308)
T COG1054 149 VEPDIETFREFPAWVEENLDLLKDKKVVMYCTGGI-R--CEKASAWMKENGF 197 (308)
T ss_pred cCCChhhhhhhHHHHHHHHHhccCCcEEEEcCCce-e--ehhhHHHHHHhcc
Confidence 56788999999999999998888889999999886 5 3457778875553
No 69
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=71.74 E-value=36 Score=33.19 Aligned_cols=91 Identities=11% Similarity=0.086 Sum_probs=49.6
Q ss_pred eEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccceeecccCceEEEEccCCcccCcEEEEEEe
Q 001080 203 TLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVRHYKQADCELVKIDIHCHIQGDVVLECIS 282 (1162)
Q Consensus 203 ~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r~y~~~d~~~i~~~i~~~v~GDV~I~~~h 282 (1162)
++.-|.-++++..+..+.|.||++|+-.+... .-..++++..+. --.|. +.|.|.+......-+.|++|+
T Consensus 3 ~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~-~~~kT~vv~~t~-----nP~Wn----e~f~f~i~~~~~~~l~v~v~d 72 (119)
T cd04036 3 TVRVLRATNITKGDLLSTPDCYVELWLPTASD-EKKRTKTIKNSI-----NPVWN----ETFEFRIQSQVKNVLELTVMD 72 (119)
T ss_pred EEEEEEeeCCCccCCCCCCCcEEEEEEcCCCC-ccCccceecCCC-----CCccc----eEEEEEeCcccCCEEEEEEEE
Confidence 44445555676666556799999998642100 001222222110 11221 235565543333347888998
Q ss_pred CCCccccCceEEEEEeecccccC
Q 001080 283 LDSDQEREEMMFRVMFNTAFIRS 305 (1162)
Q Consensus 283 ~~~~~~~~~~mFr~~FnT~FI~~ 305 (1162)
.+.. ....|.++.|...=+..
T Consensus 73 ~d~~--~~~~iG~~~~~l~~l~~ 93 (119)
T cd04036 73 EDYV--MDDHLGTVLFDVSKLKL 93 (119)
T ss_pred CCCC--CCcccEEEEEEHHHCCC
Confidence 7653 56678888887776554
No 70
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=69.22 E-value=34 Score=34.69 Aligned_cols=89 Identities=13% Similarity=0.027 Sum_probs=51.6
Q ss_pred ceeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccceeecccCceEEEEccCCcccCcEEEEE
Q 001080 201 ALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVRHYKQADCELVKIDIHCHIQGDVVLEC 280 (1162)
Q Consensus 201 ~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r~y~~~d~~~i~~~i~~~v~GDV~I~~ 280 (1162)
.|.+.-+.-++++..+..+.|.||++|+-+. ..|.|....++..-... +.+.|.+.-.....+.|+|
T Consensus 16 ~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~----------~~~kT~vi~~t~nP~Wn---e~f~f~v~~~~~~~l~i~V 82 (136)
T cd08375 16 RLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS----------QEHKTKVVSDTLNPKWN---SSMQFFVKDLEQDVLCITV 82 (136)
T ss_pred EEEEEEEEeeCCCCCCCCCCcCcEEEEEECC----------EeeeccccCCCCCCccC---ceEEEEecCccCCEEEEEE
Confidence 3566656666777777667899999999753 23444332222221111 2355554322334578899
Q ss_pred EeCCCccccCceEEEEEeecccc
Q 001080 281 ISLDSDQEREEMMFRVMFNTAFI 303 (1162)
Q Consensus 281 ~h~~~~~~~~~~mFr~~FnT~FI 303 (1162)
|+.+. ..+...|.++.|.-.=+
T Consensus 83 ~D~d~-~~~d~~lG~~~i~l~~l 104 (136)
T cd08375 83 FDRDF-FSPDDFLGRTEIRVADI 104 (136)
T ss_pred EECCC-CCCCCeeEEEEEEHHHh
Confidence 98763 34456787877765433
No 71
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=66.34 E-value=15 Score=41.88 Aligned_cols=110 Identities=11% Similarity=0.049 Sum_probs=70.1
Q ss_pred chhhhcccCCCCCe-eeecCceEEeccCCCCCCcchHHhhcChHHHHHHHHHhCCCCcEEEEecCCCCcccccccccccc
Q 001080 3 LFRKFFYRKPPDGL-LEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEY 81 (1162)
Q Consensus 3 l~rr~~~~~~dlDL-tyIT~RIiam~~~fP~~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f 81 (1162)
++|++..+|..++. +|=..++..+ ....++..|......|+...+. ....|..-...++..+..++.+.
T Consensus 129 l~k~i~~~GheIGnHT~sH~~l~~l---------s~~~~~~Ei~~~~~~i~~~~G~-~p~~fRpP~G~~n~~~~~~l~~~ 198 (268)
T TIGR02873 129 LAKMIVEQGHEIGNHAYNHPDMATL---------SKEEIYDQINQTNEIIEATIGV-TPKWFAPPSGSFNDNVVQIAADL 198 (268)
T ss_pred HHHHHHHCCCEEEecCCcCCCcccC---------CHHHHHHHHHHHHHHHHHHhCC-CCCEEECCCCCCCHHHHHHHHHC
Confidence 67888888888777 6655555433 3566677777777888777665 35566665556665666667788
Q ss_pred CcEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEec
Q 001080 82 DMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCE 127 (1162)
Q Consensus 82 ~~~v~~~P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~nVVvVHCk 127 (1162)
|.+++.|-.+..+|-.+.-+.|.. .+.+ ...++.||++|+.
T Consensus 199 G~~~v~Wsvd~~Dw~~~~~~~i~~---~v~~--~~~~G~IILmHd~ 239 (268)
T TIGR02873 199 QMGTIMWTVDTIDWKNPSPSVMVN---RVLS--KIHPGAMVLMHPT 239 (268)
T ss_pred CCeEEEeccCCCCCCCCCHHHHHH---HHHh--cCCCCcEEEEcCC
Confidence 888877755545553334454432 2222 1246789999984
No 72
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=63.93 E-value=63 Score=28.46 Aligned_cols=82 Identities=17% Similarity=0.173 Sum_probs=49.0
Q ss_pred eeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEeccccccc-ceeecccCceEEEEccCCcccCcEEEEE
Q 001080 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKL-VRHYKQADCELVKIDIHCHIQGDVVLEC 280 (1162)
Q Consensus 202 l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~-~r~y~~~d~~~i~~~i~~~v~GDV~I~~ 280 (1162)
|.|+=+..++++..+..+.+.+|++|+..+.. ...+.|...... .-.|. +.+.|.+...-..+|.|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~-------~~~~~T~~~~~~~~P~w~----e~~~~~~~~~~~~~l~~~V 69 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSE-------STKYKTKVKKNTSNPVWN----EEFEFPLDDPDLDSLSFEV 69 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTT-------CEEEEECCBSSBSSEEEE----EEEEEEESHGCGTEEEEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceee-------eeeeeeeeeeccccceee----eeeeeeeecccccceEEEE
Confidence 34555666778877767789999999987531 134555432211 12232 3466666555566699999
Q ss_pred EeCCCccccCceEEE
Q 001080 281 ISLDSDQEREEMMFR 295 (1162)
Q Consensus 281 ~h~~~~~~~~~~mFr 295 (1162)
|+.+.. ++++.|.+
T Consensus 70 ~~~~~~-~~~~~iG~ 83 (85)
T PF00168_consen 70 WDKDSF-GKDELIGE 83 (85)
T ss_dssp EEETSS-SSEEEEEE
T ss_pred EECCCC-CCCCEEEE
Confidence 998752 22444443
No 73
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=63.90 E-value=67 Score=31.74 Aligned_cols=89 Identities=12% Similarity=0.089 Sum_probs=47.9
Q ss_pred eeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCCc--cc-CcEE
Q 001080 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCH--IQ-GDVV 277 (1162)
Q Consensus 202 l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~~--v~-GDV~ 277 (1162)
|++.=|.-++++..+..+.|.||++|+-.+. .+.|....++.. .|. +.|.|.+.-. +. --+.
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~----------~~rT~v~~~t~nP~Wn----e~f~f~~~~~~~~~~~~l~ 67 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQ----------KKRTRTKPKDLNPVWN----EKLVFNVSDPSRLSNLVLE 67 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCE----------EecceeEcCCCCCccc----eEEEEEccCHHHccCCeEE
Confidence 3444455566776666677999999986531 122221111111 221 2355655321 21 2356
Q ss_pred EEEEeCCCccccCceEEEEEeeccccc
Q 001080 278 LECISLDSDQEREEMMFRVMFNTAFIR 304 (1162)
Q Consensus 278 I~~~h~~~~~~~~~~mFr~~FnT~FI~ 304 (1162)
|.+|+.+........|.++.|.-.-|.
T Consensus 68 ~~V~d~~~~~~~d~~lG~v~i~l~~l~ 94 (127)
T cd04022 68 VYVYNDRRSGRRRSFLGRVRISGTSFV 94 (127)
T ss_pred EEEeeCCCCcCCCCeeeEEEEcHHHcC
Confidence 677876532224667888888777665
No 74
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=63.46 E-value=43 Score=33.25 Aligned_cols=97 Identities=13% Similarity=0.116 Sum_probs=56.2
Q ss_pred CCCceeEEEEEEeeccccCCC-CcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCC-cccC
Q 001080 198 LDRALTLDCVILRVIPNFDGE-GGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHC-HIQG 274 (1162)
Q Consensus 198 ~~~~l~L~~IiL~~iP~f~~~-~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~-~v~G 274 (1162)
....|.++-|..++++..+.. ++|.||++||-... ......+.|....+++. .| ++.|.|++.. .+.+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~-----~~~~~~~kT~v~~~t~nP~~----nE~f~f~v~~~~l~~ 83 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPD-----KSNRGKRKTSVKKKTLNPVF----NETLRYKVEREELPT 83 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcC-----CCccccccCccCcCCCCCcc----CceEEEECCHHHhCC
Confidence 345688888888889888865 78999999997421 11111122222111111 22 1346676642 2443
Q ss_pred -cEEEEEEeCCCccccCceEEEEEeeccccc
Q 001080 275 -DVVLECISLDSDQEREEMMFRVMFNTAFIR 304 (1162)
Q Consensus 275 -DV~I~~~h~~~~~~~~~~mFr~~FnT~FI~ 304 (1162)
.+.|.||+.+. ..+.+.|.++.|.-+.+.
T Consensus 84 ~~L~~~V~d~~~-~~~~~~iG~~~i~L~~~~ 113 (125)
T cd08393 84 RVLNLSVWHRDS-LGRNSFLGEVEVDLGSWD 113 (125)
T ss_pred CEEEEEEEeCCC-CCCCcEeEEEEEecCccc
Confidence 56678888763 445667777777666553
No 75
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=62.95 E-value=49 Score=32.68 Aligned_cols=94 Identities=15% Similarity=0.175 Sum_probs=51.8
Q ss_pred CceeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCCc-ccCcEE
Q 001080 200 RALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCH-IQGDVV 277 (1162)
Q Consensus 200 ~~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~~-v~GDV~ 277 (1162)
..|.++=|.-++++..+ .+.|.||++||-... ......+.|....++.. .| ++.|.|++.-. +.--+.
T Consensus 12 ~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~-----~~~~~~~kT~v~~~t~~P~~----nE~F~f~v~~~~~~~~l~ 81 (119)
T cd08685 12 RKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPD-----KEVRFRQKTSTVPDSANPLF----HETFSFDVNERDYQKRLL 81 (119)
T ss_pred CEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeC-----CCCcceEeCccccCCCCCcc----ccEEEEEcChHHhCCEEE
Confidence 45777777888888877 678999999996531 11112223322111111 22 23477766322 222356
Q ss_pred EEEEeCCCccccCceEEEEEeecccc
Q 001080 278 LECISLDSDQEREEMMFRVMFNTAFI 303 (1162)
Q Consensus 278 I~~~h~~~~~~~~~~mFr~~FnT~FI 303 (1162)
|.+++.+....+++.|.++.|.-.=+
T Consensus 82 v~V~~~~~~~~~~~~lG~~~i~l~~~ 107 (119)
T cd08685 82 VTVWNKLSKSRDSGLLGCMSFGVKSI 107 (119)
T ss_pred EEEECCCCCcCCCEEEEEEEecHHHh
Confidence 67777664222346777777765544
No 76
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=62.61 E-value=54 Score=32.15 Aligned_cols=94 Identities=13% Similarity=0.070 Sum_probs=54.5
Q ss_pred CCceeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCC-cccC-c
Q 001080 199 DRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHC-HIQG-D 275 (1162)
Q Consensus 199 ~~~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~-~v~G-D 275 (1162)
...|.+.=+.-++++..+..+.|.||++||-... .+.++.|....++.. .| ++.|.|++.. .+.+ -
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~-------~~~~~kT~v~~~t~~P~w----ne~f~f~v~~~~l~~~~ 83 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPD-------RSNTKQSKIHKKTLNPEF----DESFVFEVPPQELPKRT 83 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecC-------CCCcEeCceEcCCCCCCc----ccEEEEeCCHHHhCCCE
Confidence 3457777777788888777788999999997311 112344432211111 12 1346666532 1333 4
Q ss_pred EEEEEEeCCCccccCceEEEEEeeccccc
Q 001080 276 VVLECISLDSDQEREEMMFRVMFNTAFIR 304 (1162)
Q Consensus 276 V~I~~~h~~~~~~~~~~mFr~~FnT~FI~ 304 (1162)
+.|+|++.+. ..+++.|.++.|..+-+.
T Consensus 84 l~i~V~d~~~-~~~~~~iG~~~i~l~~~~ 111 (124)
T cd08387 84 LEVLLYDFDQ-FSRDECIGVVELPLAEVD 111 (124)
T ss_pred EEEEEEECCC-CCCCceeEEEEEeccccc
Confidence 7778888753 345567777777666554
No 77
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=62.35 E-value=34 Score=34.40 Aligned_cols=98 Identities=13% Similarity=0.158 Sum_probs=55.1
Q ss_pred CCCCceeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCC-cccC
Q 001080 197 PLDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHC-HIQG 274 (1162)
Q Consensus 197 p~~~~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~-~v~G 274 (1162)
+....|.++-|.-+.++..+..+.|.||++|+-.... + ....+.|....++.. .| ++.|.|++.. .+..
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~----~-~~~~~kT~v~~~t~nP~w----nE~F~f~i~~~~l~~ 81 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGL----K-LIKTKKTSCMRGTIDPFY----NESFSFKVPQEELEN 81 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCC----c-ccceEcCccccCCCCCcc----ceeEEEeCCHHHhCC
Confidence 4445677777777888887777789999999853210 0 001122211111111 12 1346676632 2332
Q ss_pred -cEEEEEEeCCCccccCceEEEEEeeccccc
Q 001080 275 -DVVLECISLDSDQEREEMMFRVMFNTAFIR 304 (1162)
Q Consensus 275 -DV~I~~~h~~~~~~~~~~mFr~~FnT~FI~ 304 (1162)
-+.|.||+.+. ..+...|.++.|....+.
T Consensus 82 ~~l~~~V~d~d~-~~~~~~iG~~~l~~~~~~ 111 (135)
T cd08410 82 VSLVFTVYGHNV-KSSNDFIGRIVIGQYSSG 111 (135)
T ss_pred CEEEEEEEeCCC-CCCCcEEEEEEEcCccCC
Confidence 26678888764 346678888888765443
No 78
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=62.33 E-value=24 Score=35.17 Aligned_cols=94 Identities=14% Similarity=0.179 Sum_probs=51.3
Q ss_pred CCCceeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCC-ccc-C
Q 001080 198 LDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHC-HIQ-G 274 (1162)
Q Consensus 198 ~~~~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~-~v~-G 274 (1162)
....|+++=|.-++++..+..+.|.||++|+-... ......+.|....++.. .| ++.|.|++.. .+. -
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~-----~~~~~~~kT~v~~~t~nP~w----ne~f~f~~~~~~l~~~ 81 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPD-----AGKKSKHKTQVKKKTLNPEF----NEEFFYDIKHSDLAKK 81 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcC-----CCccCCceeeeEeccCCCCc----ccEEEEECCHHHhCCC
Confidence 34567777777788888887788999999986431 11111222221111111 12 1336666532 232 2
Q ss_pred cEEEEEEeCCCccccCceEEEEEeecc
Q 001080 275 DVVLECISLDSDQEREEMMFRVMFNTA 301 (1162)
Q Consensus 275 DV~I~~~h~~~~~~~~~~mFr~~FnT~ 301 (1162)
-+.|++++.+. ..+++.|.++.|...
T Consensus 82 ~l~~~V~d~d~-~~~~~~lG~~~i~l~ 107 (133)
T cd08384 82 TLEITVWDKDI-GKSNDYIGGLQLGIN 107 (133)
T ss_pred EEEEEEEeCCC-CCCccEEEEEEEecC
Confidence 36677787653 334566777776654
No 79
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=60.95 E-value=38 Score=33.54 Aligned_cols=86 Identities=10% Similarity=0.140 Sum_probs=44.8
Q ss_pred eEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccceeecccCceEEEEccCCcccCcEEEEEEe
Q 001080 203 TLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVRHYKQADCELVKIDIHCHIQGDVVLECIS 282 (1162)
Q Consensus 203 ~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r~y~~~d~~~i~~~i~~~v~GDV~I~~~h 282 (1162)
++.-|.-++++..+..+.|.||++|+-.+... ...++.+..+ .--.|. +.|.|++...-...+.|+|++
T Consensus 3 rV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~--~~kT~~v~~t-----~nP~Wn----e~f~f~~~~~~~~~L~~~V~d 71 (124)
T cd04037 3 RVYVVRARNLQPKDPNGKSDPYLKIKLGKKKI--NDRDNYIPNT-----LNPVFG----KMFELEATLPGNSILKISVMD 71 (124)
T ss_pred EEEEEECcCCCCCCCCCCCCcEEEEEECCeec--cceeeEEECC-----CCCccc----eEEEEEecCCCCCEEEEEEEE
Confidence 34445555677777777899999999764210 0001111111 001121 235555433333457788888
Q ss_pred CCCccccCceEEEEEeec
Q 001080 283 LDSDQEREEMMFRVMFNT 300 (1162)
Q Consensus 283 ~~~~~~~~~~mFr~~FnT 300 (1162)
.+. .+....|.++.+..
T Consensus 72 ~d~-~~~dd~iG~~~i~l 88 (124)
T cd04037 72 YDL-LGSDDLIGETVIDL 88 (124)
T ss_pred CCC-CCCCceeEEEEEee
Confidence 764 33455666666554
No 80
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=59.98 E-value=34 Score=34.24 Aligned_cols=96 Identities=15% Similarity=0.205 Sum_probs=52.9
Q ss_pred CCCCCCceeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCC-cc
Q 001080 195 WPPLDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHC-HI 272 (1162)
Q Consensus 195 ~pp~~~~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~-~v 272 (1162)
|.+....|.+.-|.-++++..+..+.|.||++|+-... ......+.|....++.. .|. +.|.|++.. .+
T Consensus 10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~-----~~~~~~~kT~v~~~t~nP~wn----e~f~f~i~~~~l 80 (136)
T cd08402 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQN-----GKRLKKKKTTIKKRTLNPYYN----ESFSFEVPFEQI 80 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEEC-----CcccceeeccceeCCCCCccc----ceEEEECCHHHh
Confidence 33444567777777888888777777999999986421 00111233322111111 221 235565532 23
Q ss_pred cC-cEEEEEEeCCCccccCceEEEEEeec
Q 001080 273 QG-DVVLECISLDSDQEREEMMFRVMFNT 300 (1162)
Q Consensus 273 ~G-DV~I~~~h~~~~~~~~~~mFr~~FnT 300 (1162)
.+ .|.|++++.+. .++.+.|.++.|--
T Consensus 81 ~~~~l~~~v~d~~~-~~~~~~iG~~~i~~ 108 (136)
T cd08402 81 QKVHLIVTVLDYDR-IGKNDPIGKVVLGC 108 (136)
T ss_pred CCCEEEEEEEeCCC-CCCCceeEEEEECC
Confidence 33 57788888764 34456676666654
No 81
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=59.73 E-value=40 Score=32.33 Aligned_cols=78 Identities=14% Similarity=0.133 Sum_probs=40.1
Q ss_pred ChHHHHHHHHHhCCCCcEEEEecCCCCccccccccccccCcEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEE
Q 001080 43 YLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVL 122 (1162)
Q Consensus 43 ~i~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f~~~v~~~P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~nVV 122 (1162)
..+++...|++ .. ++.|+..++... |.. .|.| |+-..++..+...+ .+|..+.+..|
T Consensus 13 ~~~~l~~~~~~--~~-~~~liDvR~~~e----------~~~--ghIp----gainip~~~l~~~~----~~l~~~~~~~i 69 (109)
T cd01533 13 SADELAALQAR--GA-PLVVLDGRRFDE----------YRK--MTIP----GSVSCPGAELVLRV----GELAPDPRTPI 69 (109)
T ss_pred CHHHHHHHHhc--CC-CcEEEeCCCHHH----------Hhc--CcCC----CceeCCHHHHHHHH----HhcCCCCCCeE
Confidence 44566666653 22 377888887532 221 1222 22112455444322 24434555689
Q ss_pred EEEecCCCCchHHHHHHHHHHHhc
Q 001080 123 LMHCERGGWPVLAFMLAALLIYRK 146 (1162)
Q Consensus 123 vVHCkaG~GR~tG~~ia~yLly~~ 146 (1162)
||||..|. | + .+++.+|...|
T Consensus 70 vv~C~~G~-r-s-~~a~~~L~~~G 90 (109)
T cd01533 70 VVNCAGRT-R-S-IIGAQSLINAG 90 (109)
T ss_pred EEECCCCc-h-H-HHHHHHHHHCC
Confidence 99998765 5 4 44455555444
No 82
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=58.20 E-value=67 Score=32.04 Aligned_cols=94 Identities=14% Similarity=0.144 Sum_probs=52.6
Q ss_pred CCCceeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCCc-ccC-
Q 001080 198 LDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCH-IQG- 274 (1162)
Q Consensus 198 ~~~~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~~-v~G- 274 (1162)
....|++.=+.-++++..+..+.|.||++|+-... ......+.|....++.. .| ++.|.|.+... +..
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~-----~~~~~~~kT~v~~~t~nP~w----ne~f~f~i~~~~~~~~ 82 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCE-----GRRLKKKKTSVKKNTLNPTY----NEALVFDVPPENVDNV 82 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeC-----CcccceecCCcccCCCCCcc----cceEEEECCHHHhCCC
Confidence 34557777777888888887788999999985321 00011223321111111 12 12355655321 322
Q ss_pred cEEEEEEeCCCccccCceEEEEEeecc
Q 001080 275 DVVLECISLDSDQEREEMMFRVMFNTA 301 (1162)
Q Consensus 275 DV~I~~~h~~~~~~~~~~mFr~~FnT~ 301 (1162)
.+.|+|++.+. .++.+.|.++.|...
T Consensus 83 ~l~~~v~d~~~-~~~~~~IG~~~l~~~ 108 (134)
T cd08403 83 SLIIAVVDYDR-VGHNELIGVCRVGPN 108 (134)
T ss_pred EEEEEEEECCC-CCCCceeEEEEECCC
Confidence 36788888764 345667888888543
No 83
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=57.71 E-value=78 Score=30.18 Aligned_cols=84 Identities=6% Similarity=-0.012 Sum_probs=46.9
Q ss_pred eeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccc-eeecccCceEEEEccCCcccCcEEEEE
Q 001080 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLV-RHYKQADCELVKIDIHCHIQGDVVLEC 280 (1162)
Q Consensus 202 l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~-r~y~~~d~~~i~~~i~~~v~GDV~I~~ 280 (1162)
|++.=+.-++++..+..+.|.||++|+-++ ..+.|....++. -.|. +.+.|.+.-.-...+.|+|
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~----------~~~kT~v~~~t~nP~Wn----e~f~f~v~~~~~~~l~v~v 67 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGK----------TTQKSKVKERTNNPVWE----EGFTFLVRNPENQELEIEV 67 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECC----------EEEeCccccCCCCCccc----ceEEEEeCCCCCCEEEEEE
Confidence 344445556677766667799999998754 233343221111 1221 2355555332234577788
Q ss_pred EeCCCccccCceEEEEEeecccc
Q 001080 281 ISLDSDQEREEMMFRVMFNTAFI 303 (1162)
Q Consensus 281 ~h~~~~~~~~~~mFr~~FnT~FI 303 (1162)
+..+. ...|.++.|+-.-|
T Consensus 68 ~d~~~----~~~iG~~~i~l~~l 86 (105)
T cd04050 68 KDDKT----GKSLGSLTLPLSEL 86 (105)
T ss_pred EECCC----CCccEEEEEEHHHh
Confidence 87653 35677777765544
No 84
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=57.08 E-value=90 Score=30.09 Aligned_cols=87 Identities=15% Similarity=0.183 Sum_probs=48.5
Q ss_pred eEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccc-eeecccCceEEEEccCCcccCcEEEEEE
Q 001080 203 TLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLV-RHYKQADCELVKIDIHCHIQGDVVLECI 281 (1162)
Q Consensus 203 ~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~-r~y~~~d~~~i~~~i~~~v~GDV~I~~~ 281 (1162)
++.-+.-++++..+..+.|.||++|+-.+ ..+.|....++. -.|. +.|.|.+.-.-..-+.|++|
T Consensus 3 ~V~v~~a~~L~~~~~~~~~dPyv~v~~~~----------~~~kT~v~~~t~nP~Wn----e~f~f~~~~~~~~~l~v~v~ 68 (116)
T cd08376 3 TIVLVEGKNLPPMDDNGLSDPYVKFRLGN----------EKYKSKVCSKTLNPQWL----EQFDLHLFDDQSQILEIEVW 68 (116)
T ss_pred EEEEEEEECCCCCCCCCCCCcEEEEEECC----------EeEecccccCCCCCcee----EEEEEEecCCCCCEEEEEEE
Confidence 44445556677766667799999999753 223332211111 1121 23555543222345667888
Q ss_pred eCCCccccCceEEEEEeeccccc
Q 001080 282 SLDSDQEREEMMFRVMFNTAFIR 304 (1162)
Q Consensus 282 h~~~~~~~~~~mFr~~FnT~FI~ 304 (1162)
+.+. ..+...|.++.|+-+-+.
T Consensus 69 d~~~-~~~~~~iG~~~~~l~~l~ 90 (116)
T cd08376 69 DKDT-GKKDEFIGRCEIDLSALP 90 (116)
T ss_pred ECCC-CCCCCeEEEEEEeHHHCC
Confidence 8764 345677888888765444
No 85
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=55.49 E-value=77 Score=30.44 Aligned_cols=83 Identities=13% Similarity=0.294 Sum_probs=42.9
Q ss_pred EEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCCcccCcEEEEEEeCCC
Q 001080 207 VILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCHIQGDVVLECISLDS 285 (1162)
Q Consensus 207 IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~~v~GDV~I~~~h~~~ 285 (1162)
|.-++++..+..+.|.||++|+..+ +.++.|.....+.. .|. +.+.|.+.-.-...+.|++|+.+.
T Consensus 6 i~a~~L~~~~~~~~~dpyv~v~~~~---------~~~~~T~v~~~~~~P~Wn----e~f~~~~~~~~~~~l~~~v~d~~~ 72 (115)
T cd04040 6 ISAENLPSADRNGKSDPFVKFYLNG---------EKVFKTKTIKKTLNPVWN----ESFEVPVPSRVRAVLKVEVYDWDR 72 (115)
T ss_pred EeeeCCCCCCCCCCCCCeEEEEECC---------CcceeeceecCCCCCccc----ccEEEEeccCCCCEEEEEEEeCCC
Confidence 4445566666556789999998753 23455433221111 121 123444321123346677888764
Q ss_pred ccccCceEEEEEeecccc
Q 001080 286 DQEREEMMFRVMFNTAFI 303 (1162)
Q Consensus 286 ~~~~~~~mFr~~FnT~FI 303 (1162)
..+...|.++.+.-.=+
T Consensus 73 -~~~~~~iG~~~~~l~~l 89 (115)
T cd04040 73 -GGKDDLLGSAYIDLSDL 89 (115)
T ss_pred -CCCCCceEEEEEEHHHc
Confidence 23445666666654333
No 86
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=55.29 E-value=45 Score=31.42 Aligned_cols=77 Identities=18% Similarity=0.296 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCCCccccccccccccCcEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEE
Q 001080 45 GGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLM 124 (1162)
Q Consensus 45 ~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f~~~v~~~P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~nVVvV 124 (1162)
.++...|++.+. +..|+.++.... |+.. +++ |+-..+++.+..+.+.+..+ +.+..|+|
T Consensus 5 ~~l~~~~~~~~~--~~~iiDvR~~~e----------~~~~--hI~----ga~~ip~~~~~~~~~~~~~~---~~~~~vv~ 63 (101)
T cd01528 5 AELAEWLADERE--EPVLIDVREPEE----------LEIA--FLP----GFLHLPMSEIPERSKELDSD---NPDKDIVV 63 (101)
T ss_pred HHHHHHHhcCCC--CCEEEECCCHHH----------HhcC--cCC----CCEecCHHHHHHHHHHhccc---CCCCeEEE
Confidence 455666655332 367888877532 2211 222 11112355554444333222 45678999
Q ss_pred EecCCCCchHHHHHHHHHHHh
Q 001080 125 HCERGGWPVLAFMLAALLIYR 145 (1162)
Q Consensus 125 HCkaG~GR~tG~~ia~yLly~ 145 (1162)
+|..|. | +..++.+|...
T Consensus 64 ~c~~g~-r--s~~~~~~l~~~ 81 (101)
T cd01528 64 LCHHGG-R--SMQVAQWLLRQ 81 (101)
T ss_pred EeCCCc-h--HHHHHHHHHHc
Confidence 998763 5 34445555543
No 87
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=54.44 E-value=55 Score=32.25 Aligned_cols=94 Identities=18% Similarity=0.233 Sum_probs=50.4
Q ss_pred CCCceeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccc-eeecccCceEEEEccCCc-c-cC
Q 001080 198 LDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLV-RHYKQADCELVKIDIHCH-I-QG 274 (1162)
Q Consensus 198 ~~~~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~-r~y~~~d~~~i~~~i~~~-v-~G 274 (1162)
....|.+.-+.-++++..+..+.+.||++|+-... ......+.|....... -.|. +.|.|.+... + ..
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~-----~~~~~~~~T~~~~~~~~P~wn----e~f~f~i~~~~l~~~ 82 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQG-----GKKLKKKKTSVKKGTLNPVFN----EAFSFDVPAEQLEEV 82 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcC-----CeEeeeecCcceecCCCCeee----eeEEEECCHHHhCCc
Confidence 34557777777778887776677899999986431 0011123332211111 1221 2355665322 2 45
Q ss_pred cEEEEEEeCCCccccCceEEEEEeecc
Q 001080 275 DVVLECISLDSDQEREEMMFRVMFNTA 301 (1162)
Q Consensus 275 DV~I~~~h~~~~~~~~~~mFr~~FnT~ 301 (1162)
.+.|++|+.+.. .++..|.++.|.-.
T Consensus 83 ~l~~~v~d~~~~-~~~~~lG~~~i~l~ 108 (134)
T cd00276 83 SLVITVVDKDSV-GRNEVIGQVVLGPD 108 (134)
T ss_pred EEEEEEEecCCC-CCCceeEEEEECCC
Confidence 677888887642 34455555555443
No 88
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=53.03 E-value=60 Score=31.42 Aligned_cols=87 Identities=11% Similarity=0.059 Sum_probs=48.3
Q ss_pred eeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccceeecccCceEEEEccCCcccCcEEEEEE
Q 001080 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVRHYKQADCELVKIDIHCHIQGDVVLECI 281 (1162)
Q Consensus 202 l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r~y~~~d~~~i~~~i~~~v~GDV~I~~~ 281 (1162)
|.+.=+.-++++..+..+.|.||++|+-.+.. ..++.+.... .--.|. +.+.|.+.....-.+.|+||
T Consensus 3 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~----~kT~~~~~~~----~nP~Wn----e~f~f~v~~~~~~~l~i~v~ 70 (118)
T cd08681 3 LVVVVLKARNLPNKRKLDKQDPYCVLRIGGVT----KKTKTDFRGG----QHPEWD----EELRFEITEDKKPILKVAVF 70 (118)
T ss_pred EEEEEEEccCCCCCCcCCCCCceEEEEECCCc----cccccccCCC----CCCccC----ceEEEEecCCCCCEEEEEEE
Confidence 44444555667776666779999999865421 1122222110 011221 23556554333445788999
Q ss_pred eCCCccccCceEEEEEeeccc
Q 001080 282 SLDSDQEREEMMFRVMFNTAF 302 (1162)
Q Consensus 282 h~~~~~~~~~~mFr~~FnT~F 302 (1162)
+.+.. + ...|.++.|...=
T Consensus 71 d~~~~-~-~~~iG~~~~~l~~ 89 (118)
T cd08681 71 DDDKR-K-PDLIGDTEVDLSP 89 (118)
T ss_pred eCCCC-C-CcceEEEEEecHH
Confidence 97642 2 5678888876653
No 89
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=52.53 E-value=32 Score=33.70 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=26.3
Q ss_pred CCCCceeEEEEEEeeccccCCCCcceeEEEEEec
Q 001080 197 PLDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQ 230 (1162)
Q Consensus 197 p~~~~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~ 230 (1162)
.....|.+.-+.-++++..+..+.|.||++|+-.
T Consensus 13 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~ 46 (125)
T cd08386 13 FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLL 46 (125)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCceEEEEEC
Confidence 3445677777777888887777889999999873
No 90
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=52.24 E-value=46 Score=32.45 Aligned_cols=92 Identities=15% Similarity=0.236 Sum_probs=49.6
Q ss_pred CCCceeEEEEEEeeccccC-CCCcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCCc-cc-
Q 001080 198 LDRALTLDCVILRVIPNFD-GEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCH-IQ- 273 (1162)
Q Consensus 198 ~~~~l~L~~IiL~~iP~f~-~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~~-v~- 273 (1162)
....|.+.-|.-++++..+ ..+.|.||++||-... .+..+.|....++.. .| ++.|.|++... +.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~-------~~~~~~T~v~~~~~~P~w----ne~f~f~i~~~~l~~ 80 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPD-------ERRSLQSKVKRKTQNPNF----DETFVFQVSFKELQR 80 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeC-------CCCceEeeeEcCCCCCcc----ceEEEEEcCHHHhcc
Confidence 3455777777778888877 4677999999996310 011233321111111 12 13466665332 22
Q ss_pred CcEEEEEEeCCCccccCceEEEEEeecc
Q 001080 274 GDVVLECISLDSDQEREEMMFRVMFNTA 301 (1162)
Q Consensus 274 GDV~I~~~h~~~~~~~~~~mFr~~FnT~ 301 (1162)
--+.|++|+.+. ..+...|.++.|.-.
T Consensus 81 ~~l~i~v~d~~~-~~~~~~iG~~~i~L~ 107 (123)
T cd08390 81 RTLRLSVYDVDR-FSRHCIIGHVLFPLK 107 (123)
T ss_pred cEEEEEEEECCc-CCCCcEEEEEEEecc
Confidence 246778888764 234455666555443
No 91
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=52.11 E-value=48 Score=36.52 Aligned_cols=111 Identities=12% Similarity=0.153 Sum_probs=65.7
Q ss_pred chhhhcccCCCCCe-eeecCceEEeccCCCCCCcchHHhhcChHHHHHHHHHhCCCCcEEEEecCCCCcccccccccccc
Q 001080 3 LFRKFFYRKPPDGL-LEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEY 81 (1162)
Q Consensus 3 l~rr~~~~~~dlDL-tyIT~RIiam~~~fP~~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f 81 (1162)
++||+..+|..++. +|-..++-.+ .+..++..|....+.|++..+......|..-...+.....+++.++
T Consensus 81 ~ir~i~~~GheIgnHt~~H~~~~~l---------s~~~~~~ei~~~~~~i~~~~G~~~~~~fR~P~G~~~~~~~~~l~~~ 151 (224)
T TIGR02884 81 LIKRMVDEGHIVGNHSVHHPSLTAV---------NDEKFKEELTGVEEEFKKVTGQKEMKYFRPPRGVFSERTLAYTKEL 151 (224)
T ss_pred HHHHHHHcCCEeeecCccCcCcccC---------CHHHHHHHHHHHHHHHHHHhCCCCCCEEeCCCCCcCHHHHHHHHHc
Confidence 67888889988877 7755554333 3667778888888888776654214455555555555555666778
Q ss_pred CcEEeeCCCCCCCCCC---CCHHHHHHHHHHHHHHHHhCCCcEEEEEec
Q 001080 82 DMTVMDYPRHYEGCPL---LTMETVHHFLRSSESWLSLGHQNVLLMHCE 127 (1162)
Q Consensus 82 ~~~v~~~P~~d~~~P~---p~L~~l~~~~~~i~~wL~~d~~nVVvVHCk 127 (1162)
|.+++.|-....++-. ..-+.+ .+.+.. ...++.||++|..
T Consensus 152 Gy~~v~w~v~~~Dw~~~~~~~~~~~---~~~v~~--~~~~g~IiLlHd~ 195 (224)
T TIGR02884 152 GYYTVFWSLAFKDWKVDEQPGWQYA---YKQIMK--KIHPGAILLLHAV 195 (224)
T ss_pred CCcEEeccccCcccCCCCCCCHHHH---HHHHHh--cCCCCcEEEEECC
Confidence 8887765444333321 122222 222211 1246689999984
No 92
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=51.16 E-value=68 Score=31.36 Aligned_cols=92 Identities=12% Similarity=0.037 Sum_probs=48.6
Q ss_pred EEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCCcccCcEEEEEEeCC
Q 001080 206 CVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCHIQGDVVLECISLD 284 (1162)
Q Consensus 206 ~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~~v~GDV~I~~~h~~ 284 (1162)
+|.-++++..+..+.|.||++||-..... .....++.|....++.. .| .+.|.|++.....-.+.|+||+.+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~---~~~~~~~kT~vi~~t~nP~w----ne~f~f~~~~~~~~~l~~~V~d~d 78 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGS---GQWVEIGRTEVIKNNLNPDF----VTTFTVDYYFEEVQKLRFEVYDVD 78 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCC---CceEEeccEeEeCCCCCCCc----eEEEEEEEEeEeeeEEEEEEEEec
Confidence 35556667666667899999999764210 01112333322111111 12 123445433233446888999887
Q ss_pred C---ccccCceEEEEEeeccccc
Q 001080 285 S---DQEREEMMFRVMFNTAFIR 304 (1162)
Q Consensus 285 ~---~~~~~~~mFr~~FnT~FI~ 304 (1162)
. ..+....|.++.+...-+.
T Consensus 79 ~~~~~~~~~d~iG~~~i~l~~l~ 101 (120)
T cd04048 79 SKSKDLSDHDFLGEAECTLGEIV 101 (120)
T ss_pred CCcCCCCCCcEEEEEEEEHHHHh
Confidence 5 1445566777777665554
No 93
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=51.15 E-value=1.3e+02 Score=29.47 Aligned_cols=86 Identities=15% Similarity=0.237 Sum_probs=44.2
Q ss_pred eeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccc-eeecccCceEEEEccCCcccCcEEEEE
Q 001080 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLV-RHYKQADCELVKIDIHCHIQGDVVLEC 280 (1162)
Q Consensus 202 l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~-r~y~~~d~~~i~~~i~~~v~GDV~I~~ 280 (1162)
|.+.-|.-+.++..+..+.|.||++|+..+. .+.|....++. -.| ++.|.|.+.-.-...+.|+|
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~----------~~kT~v~~~t~nP~W----ne~f~f~~~~~~~~~l~~~v 67 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQ----------TLETSVVKKSCYPRW----NEVFEFELMEGADSPLSVEV 67 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECCE----------EEeceeecCCCCCcc----CcEEEEEcCCCCCCEEEEEE
Confidence 4444455556666665567999999997531 23332211111 112 12355554322233477788
Q ss_pred EeCCCccccCceEEEEEeeccc
Q 001080 281 ISLDSDQEREEMMFRVMFNTAF 302 (1162)
Q Consensus 281 ~h~~~~~~~~~~mFr~~FnT~F 302 (1162)
|+.+. .+....|.++.|.-.=
T Consensus 68 ~d~~~-~~~~~~iG~~~~~l~~ 88 (123)
T cd04025 68 WDWDL-VSKNDFLGKVVFSIQT 88 (123)
T ss_pred EECCC-CCCCcEeEEEEEEHHH
Confidence 87653 3334556666665443
No 94
>KOG4025 consensus Putative apoptosis related protein [Function unknown]
Probab=50.97 E-value=53 Score=34.41 Aligned_cols=88 Identities=16% Similarity=0.326 Sum_probs=55.8
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHhhCCCHHHH-HHHhhhcCCCCCchhHHHHHHHhh-CCCc-hhhhhhhhHHHHhhHH
Q 001080 1064 PDLMGSVLALDDSALDIDQVDNLIKFCPTKEEM-EVLKNYNGDKGNLGKCEQFFLELM-KVPR-VESKLRVFSFKIQFQT 1140 (1162)
Q Consensus 1064 eeL~~aIl~lD~~~L~~e~l~~Ll~~lPT~EEi-~~Lk~y~gd~~~L~~aEqF~l~L~-~Vpr-~~~RL~~llFk~~F~~ 1140 (1162)
-++...|+ |...|.+..-+.++++.=+.+-- -.+..|+.+..+|.+--.-+..++ +||. +.. +..|-+
T Consensus 54 yD~~~~il--~~~~l~VNl~Es~LRm~~~~d~ney~v~r~E~~fqeLn~ka~aLk~iLSriPdEinD-------R~~FLe 124 (207)
T KOG4025|consen 54 YDFTKVIL--DDSELSVNLQESYLRMHDTSDTNEYIVSRYEQDFQELNKKAIALKRILSRIPDEIND-------RHAFLE 124 (207)
T ss_pred HHHHHHHH--hhhccccchHHHHHHhhcccchhhHhhcCCCccHHHHHHHHHHHHHHHHhCcHhhhh-------HHHHHH
Confidence 35555555 56678887778888877322222 234556666677776666666654 5774 333 446777
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 001080 1141 QVSDLRTSLNIINSASEEAS 1160 (1162)
Q Consensus 1141 ~i~eL~~~L~~v~~Ac~elR 1160 (1162)
++.+|...+..|.+|.++|-
T Consensus 125 TIK~IASaIKkLLd~vN~v~ 144 (207)
T KOG4025|consen 125 TIKLIASAIKKLLDAVNAVY 144 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78888888888887777764
No 95
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=50.92 E-value=77 Score=30.59 Aligned_cols=87 Identities=16% Similarity=0.054 Sum_probs=45.4
Q ss_pred eeEEEEEEeeccccCCC-CcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCCc---ccCcE
Q 001080 202 LTLDCVILRVIPNFDGE-GGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCH---IQGDV 276 (1162)
Q Consensus 202 l~L~~IiL~~iP~f~~~-~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~~---v~GDV 276 (1162)
|+++=+.-++++..+.. +.|.||++|+-... ++.++.|....++.. .|. +.+.|.+... ..-.+
T Consensus 3 L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~-------~~~~~kT~v~~~t~nP~Wn----e~f~f~~~~~~~~~~~~l 71 (111)
T cd04041 3 LVVTIHRATDLPKADFGTGSSDPYVTASFAKF-------GKPLYSTRIIRKDLNPVWE----ETWFVLVTPDEVKAGERL 71 (111)
T ss_pred EEEEEEEeeCCCcccCCCCCCCccEEEEEccC-------CCccEeeeeECCCCCCccc----eeEEEEeCchhccCCCEE
Confidence 45555566677777766 78999999986421 133454433222211 121 2244433211 23357
Q ss_pred EEEEEeCCCccccCceEEEEEeec
Q 001080 277 VLECISLDSDQEREEMMFRVMFNT 300 (1162)
Q Consensus 277 ~I~~~h~~~~~~~~~~mFr~~FnT 300 (1162)
.|+||+.+. ......|.++.|..
T Consensus 72 ~~~V~d~d~-~~~dd~lG~~~i~l 94 (111)
T cd04041 72 SCRLWDSDR-FTADDRLGRVEIDL 94 (111)
T ss_pred EEEEEeCCC-CCCCCcceEEEEEH
Confidence 788888763 22334555555443
No 96
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=50.51 E-value=1e+02 Score=30.18 Aligned_cols=95 Identities=12% Similarity=0.144 Sum_probs=53.2
Q ss_pred CCCCceeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccc-eeecccCceEEEEccCC-ccc-
Q 001080 197 PLDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLV-RHYKQADCELVKIDIHC-HIQ- 273 (1162)
Q Consensus 197 p~~~~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~-r~y~~~d~~~i~~~i~~-~v~- 273 (1162)
.....|.+.-|.-++++..+..+.|.||++|+-... ......+.|....++. -.|. +.|.|++.. .++
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~-----~~~~~~~kT~v~~~~~nP~wn----e~f~f~i~~~~l~~ 83 (127)
T cd04030 13 SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPD-----KSKSTRRKTSVKKDNLNPVFD----ETFEFPVSLEELKR 83 (127)
T ss_pred CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcC-----CCCCceEecccccCCCCCEEC----eEEEEecCHHHhcC
Confidence 344668888888889998887788999999996421 1112344443322211 1221 336666532 233
Q ss_pred CcEEEEEEeCCCcc-ccCceEEEEEeec
Q 001080 274 GDVVLECISLDSDQ-EREEMMFRVMFNT 300 (1162)
Q Consensus 274 GDV~I~~~h~~~~~-~~~~~mFr~~FnT 300 (1162)
..+.|.+++.+..+ .+++.|.++.+.-
T Consensus 84 ~~l~i~v~~~~~~~~~~~~~iG~~~i~l 111 (127)
T cd04030 84 RTLDVAVKNSKSFLSREKKLLGQVLIDL 111 (127)
T ss_pred CEEEEEEEECCcccCCCCceEEEEEEec
Confidence 56667888875421 2344555544443
No 97
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=50.48 E-value=77 Score=32.44 Aligned_cols=97 Identities=9% Similarity=0.074 Sum_probs=52.8
Q ss_pred CCCCCCCceeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEe--ccccccc-ce-eecccCceEEEEccC
Q 001080 194 EWPPLDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFS--TPKRSKL-VR-HYKQADCELVKIDIH 269 (1162)
Q Consensus 194 ~~pp~~~~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lys--s~~~~~~-~r-~y~~~d~~~i~~~i~ 269 (1162)
.|.|....|++.=|.-++++.+...++-.||++|+-... ++.+-. |.....+ .. .| ++.|.|++.
T Consensus 8 ~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~-------~k~~~KkKT~v~k~t~~~P~f----NEsF~Fdv~ 76 (135)
T cd08692 8 CFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFST-------GGLLYKKKTRLVKSSNGQVKW----GETMIFPVT 76 (135)
T ss_pred eecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEEC-------CCcceeecCccEECCCCCcee----cceEEEeCC
Confidence 344555667776666677877654455579999964321 111211 1100111 11 12 245788886
Q ss_pred CcccCcEEE--EEEeCCCccccCceEEEEEeecccc
Q 001080 270 CHIQGDVVL--ECISLDSDQEREEMMFRVMFNTAFI 303 (1162)
Q Consensus 270 ~~v~GDV~I--~~~h~~~~~~~~~~mFr~~FnT~FI 303 (1162)
..+. ||.| ++++.+. ..+.+.|.++.|-..-.
T Consensus 77 ~~~~-~v~l~v~v~d~~~-~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 77 QQEH-GIQFLIKLYSRSS-VRRKHFLGQVWISSDSS 110 (135)
T ss_pred chhh-eeEEEEEEEeCCC-CcCCceEEEEEECCccC
Confidence 5554 4555 4555542 44667888888876543
No 98
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=49.94 E-value=7.2e+02 Score=32.48 Aligned_cols=16 Identities=13% Similarity=0.295 Sum_probs=7.0
Q ss_pred HHhhcChHHHHHHHHH
Q 001080 38 EEYKEYLGGIVGQLRE 53 (1162)
Q Consensus 38 ~~YRn~i~~V~~~L~~ 53 (1162)
++|+.-+..|.+|++.
T Consensus 38 k~ykhVVqsVeKfi~k 53 (894)
T KOG0132|consen 38 KLYKHVVQSVEKFIKK 53 (894)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444444444443
No 99
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=49.21 E-value=72 Score=31.96 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=50.5
Q ss_pred CCceeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCCcccCc--
Q 001080 199 DRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCHIQGD-- 275 (1162)
Q Consensus 199 ~~~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~~v~GD-- 275 (1162)
...|++.-|.-++++..+..+.|.||++|+-... ......+.|....++.. .| .+.|.|.+...-..+
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~-----~~~~~~~kT~v~k~t~nP~w----~e~F~f~v~~~~~~~~~ 84 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYG-----KKRISKKKTHVKKCTLNPVF----NESFVFDIPSEELEDIS 84 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcC-----CceeeeEcCccccCCCCCcc----CceEEEECCHHHhCCCE
Confidence 3557777777888888877778999999986421 00001122221111111 12 134666664322233
Q ss_pred EEEEEEeCCCccccCceEEEEEeecc
Q 001080 276 VVLECISLDSDQEREEMMFRVMFNTA 301 (1162)
Q Consensus 276 V~I~~~h~~~~~~~~~~mFr~~FnT~ 301 (1162)
+.|+||+.+. ..+...|.++.|...
T Consensus 85 l~~~v~d~d~-~~~~~~iG~~~~~~~ 109 (136)
T cd08404 85 VEFLVLDSDR-VTKNEVIGRLVLGPK 109 (136)
T ss_pred EEEEEEECCC-CCCCccEEEEEECCc
Confidence 4567888764 334566777766543
No 100
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=48.98 E-value=58 Score=32.60 Aligned_cols=94 Identities=10% Similarity=0.100 Sum_probs=48.5
Q ss_pred CceeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCC--c-c-cC
Q 001080 200 RALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHC--H-I-QG 274 (1162)
Q Consensus 200 ~~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~--~-v-~G 274 (1162)
..|.+.-|.-++++..+..+.|.||++|+-..... ......+.|....+++. .|. +.|.|.+.. . + ..
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~---~~~~~~~kT~v~~~t~nP~wn----E~f~f~i~~~~~~~~~~ 88 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHL---FPDVPTPKTQVKKKTLFPLFD----ESFEFNVPPEQCSVEGA 88 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCc---CccccccccccCcCCCCCccC----CEEEEEechhhcccCCC
Confidence 45666667777888877767899999998753100 00112333332222221 221 235555432 1 1 22
Q ss_pred cEEEEEEeCCCccccCceEEEEEeecc
Q 001080 275 DVVLECISLDSDQEREEMMFRVMFNTA 301 (1162)
Q Consensus 275 DV~I~~~h~~~~~~~~~~mFr~~FnT~ 301 (1162)
.+.|+||+.+. ..+...|.++.|.-.
T Consensus 89 ~l~~~V~d~d~-~~~d~~iG~~~i~l~ 114 (133)
T cd04009 89 LLLFTVKDYDL-LGSNDFEGEAFLPLN 114 (133)
T ss_pred EEEEEEEecCC-CCCCcEeEEEEEeHH
Confidence 46667887653 233455555555433
No 101
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=48.69 E-value=1.2e+02 Score=29.28 Aligned_cols=16 Identities=13% Similarity=0.441 Sum_probs=11.4
Q ss_pred CCCcEEEEEecCCCCc
Q 001080 117 GHQNVLLMHCERGGWP 132 (1162)
Q Consensus 117 d~~nVVvVHCkaG~GR 132 (1162)
+.++.|||||..|+.|
T Consensus 60 ~~~~~iv~yC~~~~~r 75 (113)
T cd01531 60 SKKDTVVFHCALSQVR 75 (113)
T ss_pred CCCCeEEEEeecCCcc
Confidence 4557899999855445
No 102
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=48.08 E-value=62 Score=38.13 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=28.1
Q ss_pred CCCchhHHHHHHHhhCCCchhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHH
Q 001080 1106 KGNLGKCEQFFLELMKVPRVESKLRVFSFKIQFQTQVSDLRTSLNIINSAS 1156 (1162)
Q Consensus 1106 ~~~L~~aEqF~l~L~~Vpr~~~RL~~llFk~~F~~~i~eL~~~L~~v~~Ac 1156 (1162)
..+-+.-|+|++--.+|-+|..||+.| .+.++.|..-+.+|.+=.
T Consensus 58 ~~~~s~qeKFl~IR~KlleL~~~lQ~l------S~df~~LqPLF~Ti~eys 102 (379)
T PF11593_consen 58 MNNKSPQEKFLLIRSKLLELYNKLQEL------SSDFQKLQPLFDTIPEYS 102 (379)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhchHHhhhHHHh
Confidence 344567789988777888888777653 444455555555544433
No 103
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=46.93 E-value=1.5e+02 Score=28.96 Aligned_cols=94 Identities=16% Similarity=0.235 Sum_probs=53.7
Q ss_pred CCCceeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCC-ccc-C
Q 001080 198 LDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHC-HIQ-G 274 (1162)
Q Consensus 198 ~~~~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~-~v~-G 274 (1162)
....|.+.=+.-++++..+..+.|.||++||-... .+.++.|....++.. .| ++.|.|.+.. .+. .
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~-------~~~~~kT~v~~~t~nP~w----ne~f~f~i~~~~l~~~ 82 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPD-------KKKKFETKVHRKTLNPVF----NETFTFKVPYSELGNK 82 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcC-------CCCceecccCcCCCCCce----eeeEEEeCCHHHhCCC
Confidence 34557777777788887776778999999986421 112444433221111 22 1336666532 233 3
Q ss_pred cEEEEEEeCCCccccCceEEEEEeecccc
Q 001080 275 DVVLECISLDSDQEREEMMFRVMFNTAFI 303 (1162)
Q Consensus 275 DV~I~~~h~~~~~~~~~~mFr~~FnT~FI 303 (1162)
-+.|++++.+. ..+...|.++.|.-.-+
T Consensus 83 ~l~~~V~d~d~-~~~~~~lG~~~i~l~~~ 110 (124)
T cd08385 83 TLVFSVYDFDR-FSKHDLIGEVRVPLLTV 110 (124)
T ss_pred EEEEEEEeCCC-CCCCceeEEEEEecCcc
Confidence 57778888753 33455666666655544
No 104
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=46.20 E-value=3.1e+02 Score=27.15 Aligned_cols=87 Identities=11% Similarity=0.039 Sum_probs=47.0
Q ss_pred ceeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccceeecccCceEEEEccCCcccCcEEEEE
Q 001080 201 ALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVRHYKQADCELVKIDIHCHIQGDVVLEC 280 (1162)
Q Consensus 201 ~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r~y~~~d~~~i~~~i~~~v~GDV~I~~ 280 (1162)
.|.+.-|.-++++. .+.|.||++|+-.+ +....|......--.| ++.|.|++.-.-...+.|.+
T Consensus 5 ~L~V~Vi~A~~L~~---~~~~DPYv~v~l~~---------~~~~kT~v~~~~nP~W----nE~f~f~~~~~~~~~l~v~v 68 (126)
T cd08400 5 SLQLNVLEAHKLPV---KHVPHPYCVISLNE---------VKVARTKVREGPNPVW----SEEFVFDDLPPDVNSFTISL 68 (126)
T ss_pred EEEEEEEEeeCCCC---CCCCCeeEEEEECC---------EeEEEeecCCCCCCcc----CCEEEEecCCCCcCEEEEEE
Confidence 35555555566664 35699999998753 1223332111111122 12366653211113567788
Q ss_pred EeCCCccccCceEEEEEeeccccc
Q 001080 281 ISLDSDQEREEMMFRVMFNTAFIR 304 (1162)
Q Consensus 281 ~h~~~~~~~~~~mFr~~FnT~FI~ 304 (1162)
++.+. ..+...|.++.+.-..+.
T Consensus 69 ~d~~~-~~~d~~iG~v~i~l~~l~ 91 (126)
T cd08400 69 SNKAK-RSKDSEIAEVTVQLSKLQ 91 (126)
T ss_pred EECCC-CCCCCeEEEEEEEHhHcc
Confidence 88653 445677888888765554
No 105
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=46.06 E-value=1.3e+02 Score=29.72 Aligned_cols=88 Identities=13% Similarity=0.079 Sum_probs=48.7
Q ss_pred eeEEEEEEeeccccCC-CCcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCCcccCcEEEE
Q 001080 202 LTLDCVILRVIPNFDG-EGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCHIQGDVVLE 279 (1162)
Q Consensus 202 l~L~~IiL~~iP~f~~-~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~~v~GDV~I~ 279 (1162)
|.+.-+.-++++.++. .+.|.||+.|+-.+ +.++.|....+++. .| ++.|.|++... ...+.|.
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~---------~~~~kT~v~~kt~~P~W----nE~F~f~v~~~-~~~l~~~ 67 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQ---------EEVFRTKTVEKSLCPFF----GEDFYFEIPRT-FRHLSFY 67 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECC---------ccEEEeeEEECCCCCcc----CCeEEEEcCCC-CCEEEEE
Confidence 3444455556666532 35689999998643 23455543222221 12 23466666421 2467777
Q ss_pred EEeCCCccccCceEEEEEeeccccc
Q 001080 280 CISLDSDQEREEMMFRVMFNTAFIR 304 (1162)
Q Consensus 280 ~~h~~~~~~~~~~mFr~~FnT~FI~ 304 (1162)
+|+.+. ..+...|.++-|...-+.
T Consensus 68 v~d~~~-~~~~~~iG~~~i~l~~l~ 91 (121)
T cd08401 68 IYDRDV-LRRDSVIGKVAIKKEDLH 91 (121)
T ss_pred EEECCC-CCCCceEEEEEEEHHHcc
Confidence 888764 334566777777655554
No 106
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=45.97 E-value=1.2e+02 Score=29.77 Aligned_cols=86 Identities=10% Similarity=0.026 Sum_probs=44.2
Q ss_pred eeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCCcccCcEEEEE
Q 001080 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCHIQGDVVLEC 280 (1162)
Q Consensus 202 l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~~v~GDV~I~~ 280 (1162)
|.|+-+.-++++..+..+.|.||++|+-.+ +.+|.|....+++. .| . +.|.|.+.- ..-+.|++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~---------~~~~kT~v~~~t~nP~W-n---e~f~~~~~~--~~~l~i~V 66 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDG---------GQTHSTDVAKKTLDPKW-N---EHFDLTVGP--SSIITIQV 66 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECC---------ccceEccEEcCCCCCcc-c---ceEEEEeCC--CCEEEEEE
Confidence 334444445666666556799999999642 23444432222211 12 1 235555432 44677788
Q ss_pred EeCCCcccc-CceEEEEEeeccc
Q 001080 281 ISLDSDQER-EEMMFRVMFNTAF 302 (1162)
Q Consensus 281 ~h~~~~~~~-~~~mFr~~FnT~F 302 (1162)
|+.+..... ...|.++.|.-.=
T Consensus 67 ~d~~~~~~~~d~~lG~~~i~l~~ 89 (123)
T cd08382 67 FDQKKFKKKDQGFLGCVRIRANA 89 (123)
T ss_pred EECCCCCCCCCceEeEEEEEHHH
Confidence 887642211 2455555554443
No 107
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=45.65 E-value=93 Score=31.51 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=15.5
Q ss_pred EEEeeccccCCCCcceeEEEEEec
Q 001080 207 VILRVIPNFDGEGGCCPIFRIYGQ 230 (1162)
Q Consensus 207 IiL~~iP~f~~~~gcrP~~~Iy~~ 230 (1162)
|.-++++.. ..+.|.||++|+-.
T Consensus 6 i~A~~L~~~-~~g~~dPyv~v~~~ 28 (137)
T cd08675 6 LECRDLALK-SNGTCDPFARVTLN 28 (137)
T ss_pred EEccCCCcc-cCCCCCcEEEEEEe
Confidence 334455544 44679999999976
No 108
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=45.53 E-value=83 Score=31.15 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=17.3
Q ss_pred hCCCcEEEEEecCCCCchHHHHHHHHHHH
Q 001080 116 LGHQNVLLMHCERGGWPVLAFMLAALLIY 144 (1162)
Q Consensus 116 ~d~~nVVvVHCkaG~GR~tG~~ia~yLly 144 (1162)
.+.+..|||||..++.| +..+|.+|..
T Consensus 65 ~~~~~~vv~yC~~sg~r--s~~aa~~L~~ 91 (121)
T cd01530 65 KKKRRVLIFHCEFSSKR--GPRMARHLRN 91 (121)
T ss_pred cCCCCEEEEECCCcccc--HHHHHHHHHH
Confidence 45678999999733345 4445556553
No 109
>PF14968 CCDC84: Coiled coil protein 84
Probab=45.10 E-value=8.2 Score=45.06 Aligned_cols=108 Identities=10% Similarity=0.096 Sum_probs=71.9
Q ss_pred ccccccchhhhcccCCChhHHHHHHHhcCC--------C-----CCCHHH--------HHHHHhhCCCHHHHHHHhhh-c
Q 001080 1046 LRRANNCEIMLTKVKIPLPDLMGSVLALDD--------S-----ALDIDQ--------VDNLIKFCPTKEEMEVLKNY-N 1103 (1162)
Q Consensus 1046 ~kRaqNI~I~L~k~k~s~eeL~~aIl~lD~--------~-----~L~~e~--------l~~Ll~~lPT~EEi~~Lk~y-~ 1103 (1162)
.+=.+++..+|.+|...+.+|+.+|..--. . ..+.|. ..+++..|.+.|=++.+++| .
T Consensus 19 ~~Hq~~L~~~L~rf~~Kl~d~R~~lk~p~v~~~~~~~~~~fWC~fC~~ev~~~~s~~~~~~ai~HLaS~eH~k~vk~F~w 98 (336)
T PF14968_consen 19 PKHQKSLSAFLSRFRSKLSDARFFLKKPSVLRYDPEHRNRFWCVFCDCEVREHDSSFACGGAIEHLASPEHRKNVKKFWW 98 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCccccceeEeeCccchhhhccchhhhccHHhhcCCHHHHHHHHHHHH
Confidence 344457899999998889999999886211 0 112222 25788999999999999998 3
Q ss_pred CCCCCchhHHHHHHHhhCCCchhhhhhhhH--HHHhhHHHHHHHHHHHHHHH
Q 001080 1104 GDKGNLGKCEQFFLELMKVPRVESKLRVFS--FKIQFQTQVSDLRTSLNIIN 1153 (1162)
Q Consensus 1104 gd~~~L~~aEqF~l~L~~Vpr~~~RL~~ll--Fk~~F~~~i~eL~~~L~~v~ 1153 (1162)
......+..|.|++.--.+.+|+.++...+ +...-++.+.+....++.++
T Consensus 99 ~~g~~~d~~d~f~Is~~d~~r~kk~~~~~l~~~~~~~ee~~~~~a~~i~~ie 150 (336)
T PF14968_consen 99 KNGADMDLKDKFRISEEDYARFKKKCEKALDEYEESEEEFIKQSAGPIRDIE 150 (336)
T ss_pred HcCCCcccccceeecHHHHHHHHHHHHHHHHHHHhccchhhhccccchHHHH
Confidence 445556667788888777888888887766 44444444433333333333
No 110
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=44.96 E-value=3.7e+02 Score=27.73 Aligned_cols=120 Identities=10% Similarity=0.037 Sum_probs=62.1
Q ss_pred eeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccc--cceeecccCceEEEEccCCcccCcEEEE
Q 001080 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSK--LVRHYKQADCELVKIDIHCHIQGDVVLE 279 (1162)
Q Consensus 202 l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~--~~r~y~~~d~~~i~~~i~~~v~GDV~I~ 279 (1162)
|.+.=+.-++++..+..|.|.||++|+-++. .+.|....+ .--.|. +.|.|.+.-...--+.|+
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~----------~~kTk~~~~~t~nP~WN----E~F~f~v~~~~~~~l~v~ 67 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQ----------VLRTRPSQTRNGNPSWN----EELMFVAAEPFEDHLILS 67 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCE----------EeeeEeccCCCCCCccc----CcEEEEecCccCCeEEEE
Confidence 3444455566777777778999999987641 222221111 111222 235555422222356678
Q ss_pred EEeCCCccccCceEEEEEeecccccCC---------EEEeccCC-ccccccCCCCCCCCcEEEEEEec
Q 001080 280 CISLDSDQEREEMMFRVMFNTAFIRSN---------ILMLNRDE-IDILWNSKDLFSKEFRAEVLFSE 337 (1162)
Q Consensus 280 ~~h~~~~~~~~~~mFr~~FnT~FI~~n---------~L~l~k~e-LD~~~~~k~~fp~dF~Vel~F~~ 337 (1162)
+++.+. ..++..|.++.|.-.-|..+ -+.|.+.. ++. .+.+.+..-...|+|.|..
T Consensus 68 V~d~~~-~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~-~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 68 VEDRVG-PNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAME-QKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred EEEecC-CCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCccc-ccccCcccccEEEEEEecC
Confidence 887653 23456787887776665321 13332221 110 0112456677888888874
No 111
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=44.62 E-value=2.4e+02 Score=27.73 Aligned_cols=114 Identities=12% Similarity=0.083 Sum_probs=56.5
Q ss_pred EEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCCc--ccCcEEEEEEeCC
Q 001080 208 ILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCH--IQGDVVLECISLD 284 (1162)
Q Consensus 208 iL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~~--v~GDV~I~~~h~~ 284 (1162)
..+.++. ..+.|.||++|+-.+. .+.|....++.. .|. +.|.|.+.-. -...+.|+||+.+
T Consensus 4 ~a~~L~~--~~g~~Dpyv~v~~~~~----------~~kT~v~~~~~nP~Wn----e~f~f~~~~~~~~~~~l~~~v~d~~ 67 (127)
T cd08373 4 SLKNLPG--LKGKGDRIAKVTFRGV----------KKKTRVLENELNPVWN----ETFEWPLAGSPDPDESLEIVVKDYE 67 (127)
T ss_pred EeeCCcc--cCCCCCCEEEEEECCE----------eeecceeCCCcCCccc----ceEEEEeCCCcCCCCEEEEEEEECC
Confidence 3445555 2357999999987531 233322111111 221 2355655322 2445677888876
Q ss_pred CccccCceEEEEEeecccccCC-EEEeccCCccccccCCCCCCCCcEEEEEEeccCCC
Q 001080 285 SDQEREEMMFRVMFNTAFIRSN-ILMLNRDEIDILWNSKDLFSKEFRAEVLFSEMDAA 341 (1162)
Q Consensus 285 ~~~~~~~~mFr~~FnT~FI~~n-~L~l~k~eLD~~~~~k~~fp~dF~Vel~F~~~~~~ 341 (1162)
. ..+...|.++.|.-.=+..+ .......=+|. ..+.......+++.|.+.+..
T Consensus 68 ~-~~~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~---~~~~~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 68 K-VGRNRLIGSATVSLQDLVSEGLLEVTEPLLDS---NGRPTGATISLEVSYQPPDGA 121 (127)
T ss_pred C-CCCCceEEEEEEEhhHcccCCceEEEEeCcCC---CCCcccEEEEEEEEEeCCCCc
Confidence 4 33456788888776544422 21111111111 112233466677777766544
No 112
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=44.09 E-value=1.5e+02 Score=29.73 Aligned_cols=92 Identities=12% Similarity=0.040 Sum_probs=49.5
Q ss_pred CCCCceeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccceeecccCceEEEEccCCc-c-cC
Q 001080 197 PLDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVRHYKQADCELVKIDIHCH-I-QG 274 (1162)
Q Consensus 197 p~~~~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r~y~~~d~~~i~~~i~~~-v-~G 274 (1162)
+....|++.-|.-++++ ..++|-||++||-... ++ +.-+.|....+++.-+ -++.|.|++... + ..
T Consensus 11 ~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~----~k--~~k~kT~v~rktlnPv---fnE~f~F~v~~~~l~~~ 78 (118)
T cd08677 11 KQKAELHVNILEAENIS---VDAGCECYISGCVSVS----EG--QKEAQTALKKLALHTQ---WEEELVFPLPEEESLDG 78 (118)
T ss_pred CcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCC----cC--ccEEEcceecCCCCCc---cccEEEEeCCHHHhCCc
Confidence 34455777667777777 2467999999996421 11 1122343322222211 124577777432 2 33
Q ss_pred cEEEEEEeCCCccccCceEEEEEeecc
Q 001080 275 DVVLECISLDSDQEREEMMFRVMFNTA 301 (1162)
Q Consensus 275 DV~I~~~h~~~~~~~~~~mFr~~FnT~ 301 (1162)
-+.|.+++.+. .++...|.++.+..+
T Consensus 79 tL~~~V~d~Dr-fs~~d~IG~v~l~l~ 104 (118)
T cd08677 79 TLTLTLRCCDR-FSRHSTLGELRLKLA 104 (118)
T ss_pred EEEEEEEeCCC-CCCCceEEEEEEccc
Confidence 45566777653 445556666665544
No 113
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=44.05 E-value=1.7e+02 Score=28.69 Aligned_cols=85 Identities=16% Similarity=0.186 Sum_probs=45.8
Q ss_pred eeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCCcccCcEEEEE
Q 001080 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCHIQGDVVLEC 280 (1162)
Q Consensus 202 l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~~v~GDV~I~~ 280 (1162)
|+++=|.-++++..+..|.|.||++|+-.+ +.++.|....++.. .| ++.|.|.+.-. .--+.|+|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~---------~~~~kT~v~~~t~nP~W----ne~f~~~~~~~-~~~l~v~v 67 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDN---------EVIIRTATVWKTLNPFW----GEEYTVHLPPG-FHTVSFYV 67 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECC---------EeeeeeeeEcCCCCCcc----cceEEEeeCCC-CCEEEEEE
Confidence 455556666777777778899999998653 22344332111111 12 12355544210 12355667
Q ss_pred EeCCCccccCceEEEEEeecc
Q 001080 281 ISLDSDQEREEMMFRVMFNTA 301 (1162)
Q Consensus 281 ~h~~~~~~~~~~mFr~~FnT~ 301 (1162)
++.+. .++...|.++.|.-.
T Consensus 68 ~d~~~-~~~d~~iG~~~~~~~ 87 (121)
T cd04054 68 LDEDT-LSRDDVIGKVSLTRE 87 (121)
T ss_pred EECCC-CCCCCEEEEEEEcHH
Confidence 77653 344567777777643
No 114
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=44.04 E-value=83 Score=31.97 Aligned_cols=94 Identities=10% Similarity=0.073 Sum_probs=53.5
Q ss_pred CCCCceeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEE--ecccccccce-eecccCceEEEEccCCc-c
Q 001080 197 PLDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLF--STPKRSKLVR-HYKQADCELVKIDIHCH-I 272 (1162)
Q Consensus 197 p~~~~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~ly--ss~~~~~~~r-~y~~~d~~~i~~~i~~~-v 272 (1162)
.....|.+.=|..++++..+..+.|.||++|+-... .++.+. .|....++.. .| ++.|.|++... +
T Consensus 12 ~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~------~~~~~~~~kT~v~~~t~nPvf----nEtF~f~i~~~~l 81 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNS------DGQEISKSKTSIRRGQPDPEF----KETFVFQVALFQL 81 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeC------CCcceeeccceeecCCCCCcE----eeeEEEECCHHHh
Confidence 344667777788888888887788999999986421 111121 2211111111 12 24577776432 2
Q ss_pred c-CcEEEEEEeCCCccccCceEEEEEeecc
Q 001080 273 Q-GDVVLECISLDSDQEREEMMFRVMFNTA 301 (1162)
Q Consensus 273 ~-GDV~I~~~h~~~~~~~~~~mFr~~FnT~ 301 (1162)
. -.+.|.+++.+. ..+++.|.++.|...
T Consensus 82 ~~~~L~~~V~~~~~-~~~~~~iG~v~l~~~ 110 (138)
T cd08408 82 SEVTLMFSVYNKRK-MKRKEMIGWFSLGLN 110 (138)
T ss_pred CccEEEEEEEECCC-CCCCcEEEEEEECCc
Confidence 2 244557777764 456677777777544
No 115
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=43.89 E-value=1.6e+02 Score=28.36 Aligned_cols=88 Identities=10% Similarity=0.154 Sum_probs=47.9
Q ss_pred eEEEEEEeeccccCC-CCcceeEEEEEecCCCcccCCCCcEEEecccccccc-eeecccCceEEEEccCC-cc-cCcEEE
Q 001080 203 TLDCVILRVIPNFDG-EGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLV-RHYKQADCELVKIDIHC-HI-QGDVVL 278 (1162)
Q Consensus 203 ~L~~IiL~~iP~f~~-~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~-r~y~~~d~~~i~~~i~~-~v-~GDV~I 278 (1162)
.++=|.-++++..+. .+.|.||++|+-.+ ..+.|....++. -.|+ ++.|.|.+.. .+ ..-+.|
T Consensus 2 ~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~----------~~~kT~v~~~~~nP~W~---ne~f~f~i~~~~l~~~~l~i 68 (110)
T cd08688 2 KVRVVAARDLPVMDRSSDLTDAFVEVKFGS----------TTYKTDVVKKSLNPVWN---SEWFRFEVDDEELQDEPLQI 68 (110)
T ss_pred EEEEEEEECCCccccCCCCCCceEEEEECC----------eeEecceecCCCCCccc---CcEEEEEcChHHcCCCeEEE
Confidence 344455567777764 46699999999753 233343222221 1221 1235565532 13 245778
Q ss_pred EEEeCCCccccCceEEEEEeeccccc
Q 001080 279 ECISLDSDQEREEMMFRVMFNTAFIR 304 (1162)
Q Consensus 279 ~~~h~~~~~~~~~~mFr~~FnT~FI~ 304 (1162)
+||+.+. .++...|.++.+.-.-+.
T Consensus 69 ~V~d~d~-~~~~~~iG~~~~~l~~l~ 93 (110)
T cd08688 69 RVMDHDT-YSANDAIGKVYIDLNPLL 93 (110)
T ss_pred EEEeCCC-CCCCCceEEEEEeHHHhc
Confidence 8998764 334556776666555443
No 116
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=43.49 E-value=1e+02 Score=31.45 Aligned_cols=94 Identities=13% Similarity=0.090 Sum_probs=52.3
Q ss_pred CCCCceeEEEEEEeeccccC--CCCcceeEEEEEecCCCcccCCCCcEE--EecccccccceeecccCceEEEEccCCcc
Q 001080 197 PLDRALTLDCVILRVIPNFD--GEGGCCPIFRIYGQDPLMVADRTPKVL--FSTPKRSKLVRHYKQADCELVKIDIHCHI 272 (1162)
Q Consensus 197 p~~~~l~L~~IiL~~iP~f~--~~~gcrP~~~Iy~~~~~~~~~~~~k~l--yss~~~~~~~r~y~~~d~~~i~~~i~~~v 272 (1162)
+....|.+.=+.-+++...+ ..+||.||++||-... .+.+ ..|....+++ .-.-++.|.|++.-.-
T Consensus 12 ~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~-------~~k~~kkkT~v~k~t~---nPvfNE~f~F~v~~~~ 81 (138)
T cd08407 12 PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQ-------NAKLKKKQTKRAKHKI---NPVWNEMIMFELPSEL 81 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcC-------CcccceeccceeeCCC---CCccccEEEEECCHHH
Confidence 44566777777888887776 3467999999986531 1111 1111111111 1111345777775332
Q ss_pred --cCcEEEEEEeCCCccccCceEEEEEeecc
Q 001080 273 --QGDVVLECISLDSDQEREEMMFRVMFNTA 301 (1162)
Q Consensus 273 --~GDV~I~~~h~~~~~~~~~~mFr~~FnT~ 301 (1162)
...+.|.+++.+. .++.+.|.++.|-..
T Consensus 82 L~~~~L~~~V~d~d~-~~~~d~iG~v~lg~~ 111 (138)
T cd08407 82 LAASSVELEVLNQDS-PGQSLPLGRCSLGLH 111 (138)
T ss_pred hCccEEEEEEEeCCC-CcCcceeceEEecCc
Confidence 2336667777654 445667777777664
No 117
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=43.42 E-value=58 Score=33.11 Aligned_cols=95 Identities=14% Similarity=0.162 Sum_probs=53.4
Q ss_pred CCCCCCceeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEE--ecccccccc-eeecccCceEEEEccCCc
Q 001080 195 WPPLDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLF--STPKRSKLV-RHYKQADCELVKIDIHCH 271 (1162)
Q Consensus 195 ~pp~~~~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~ly--ss~~~~~~~-r~y~~~d~~~i~~~i~~~ 271 (1162)
|.+....|.+.-|.-++++..+..+.|.||++||-... .+.+. .|....+++ -.| ++.|.|++...
T Consensus 10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~-------~~~~~k~kT~v~k~t~nP~~----nE~f~F~v~~~ 78 (136)
T cd08406 10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQD-------GRKISKKKTSVKRDDTNPIF----NEAMIFSVPAI 78 (136)
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeC-------CccccccCCccccCCCCCee----ceeEEEECCHH
Confidence 44455678888888899988887788999999986421 11111 111111111 122 24467776432
Q ss_pred -ccC-cEEEEEEeCCCccccCceEEEEEeecc
Q 001080 272 -IQG-DVVLECISLDSDQEREEMMFRVMFNTA 301 (1162)
Q Consensus 272 -v~G-DV~I~~~h~~~~~~~~~~mFr~~FnT~ 301 (1162)
+.. -+.|.+++.+. .++...|.++.+-..
T Consensus 79 ~l~~~~l~~~V~~~d~-~~~~~~iG~v~lg~~ 109 (136)
T cd08406 79 VLQDLSLRVTVAESTE-DGKTPNVGHVIIGPA 109 (136)
T ss_pred HhCCcEEEEEEEeCCC-CCCCCeeEEEEECCC
Confidence 322 35566777653 345567777776443
No 118
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=43.39 E-value=1.9e+02 Score=27.97 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=24.3
Q ss_pred CCceeEEEEEEeeccccC-CCCcceeEEEEEec
Q 001080 199 DRALTLDCVILRVIPNFD-GEGGCCPIFRIYGQ 230 (1162)
Q Consensus 199 ~~~l~L~~IiL~~iP~f~-~~~gcrP~~~Iy~~ 230 (1162)
...|.+.-|.-++++..+ ..+.|.||++||-.
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~ 45 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLL 45 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEe
Confidence 345777777777888877 56789999999864
No 119
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=43.26 E-value=81 Score=30.73 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=25.0
Q ss_pred CCCceeEEEEEEeeccccCCCCcceeEEEEEec
Q 001080 198 LDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQ 230 (1162)
Q Consensus 198 ~~~~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~ 230 (1162)
....|.+.=|.-++++..+..+.|.||++|+-.
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~ 46 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLL 46 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEc
Confidence 335577776777778877777789999999975
No 120
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=42.67 E-value=1.8e+02 Score=28.89 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=53.6
Q ss_pred CCCceeEEEEEEeeccccCC-CCcceeEEEEEecCCCcccCCCCcEEEecccccccc-eeecccCceEEEEccCC-cccC
Q 001080 198 LDRALTLDCVILRVIPNFDG-EGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLV-RHYKQADCELVKIDIHC-HIQG 274 (1162)
Q Consensus 198 ~~~~l~L~~IiL~~iP~f~~-~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~-r~y~~~d~~~i~~~i~~-~v~G 274 (1162)
....|.++=|..++++..+. .+.|.||++||-... ......+.|....++. -.| ++.|.|++.. .+.+
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~-----~~~~~~~kT~v~~~t~nP~w----nE~f~f~i~~~~l~~ 83 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPD-----KSRQSKRKTSIKRNTTNPVY----NETLKYSISHSQLET 83 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcC-----CccccceEeeeeeCCCCCcc----cceEEEECCHHHhCC
Confidence 34557777777888876654 366999999987421 1000111221111111 122 1346676632 2333
Q ss_pred -cEEEEEEeCCCccccCceEEEEEeeccccc
Q 001080 275 -DVVLECISLDSDQEREEMMFRVMFNTAFIR 304 (1162)
Q Consensus 275 -DV~I~~~h~~~~~~~~~~mFr~~FnT~FI~ 304 (1162)
-+.|.|++.+. .++.+.|..+.|..+-+.
T Consensus 84 ~~L~~~V~d~~~-~~~~~~lG~~~i~l~~~~ 113 (125)
T cd04029 84 RTLQLSVWHYDR-FGRNTFLGEVEIPLDSWN 113 (125)
T ss_pred CEEEEEEEECCC-CCCCcEEEEEEEeCCccc
Confidence 37788898764 445667888777766554
No 121
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=42.53 E-value=55 Score=34.58 Aligned_cols=100 Identities=14% Similarity=0.254 Sum_probs=64.6
Q ss_pred cCceEEeccCCCCCCcchHHhhcC--hHHHHHHHHHhCCCCcEEEEecCCCCccccccccccccCcEEeeCCCCCCCC--
Q 001080 20 SERVFVFDCCFTTDILEEEEYKEY--LGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGC-- 95 (1162)
Q Consensus 20 T~RIiam~~~fP~~~~~e~~YRn~--i~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f~~~v~~~P~~d~~~-- 95 (1162)
..+|+|. +|=.+ |..++.+ ..+.++.|++... -.++++-.........-....||.-|+.||..-.+.
T Consensus 21 ~~~l~AT--s~ds~---~~l~~kY~~~~~nl~~L~~~g~---~V~~~VDat~l~~~~~~~~~~FDrIiFNFPH~G~~~~~ 92 (166)
T PF10354_consen 21 ATNLVAT--SYDSE---EELLQKYPDAEENLEELRELGV---TVLHGVDATKLHKHFRLKNQRFDRIIFNFPHVGGGSED 92 (166)
T ss_pred CCeEEEe--ecCch---HHHHHhcccHHHHHHHHhhcCC---ccccCCCCCcccccccccCCcCCEEEEeCCCCCCCccc
Confidence 5689998 56554 4444443 4577888854433 456888777654433222367898899998554111
Q ss_pred ---CC-CCHHHHHHHHHHHHHHHHhCCCcEEEEEecC
Q 001080 96 ---PL-LTMETVHHFLRSSESWLSLGHQNVLLMHCER 128 (1162)
Q Consensus 96 ---P~-p~L~~l~~~~~~i~~wL~~d~~nVVvVHCka 128 (1162)
.. ..-++|..|++++...|..+ +.|.|-||.+
T Consensus 93 ~~~~i~~nr~Ll~~Ff~Sa~~~L~~~-G~IhVTl~~~ 128 (166)
T PF10354_consen 93 GKRNIRLNRELLRGFFKSASQLLKPD-GEIHVTLKDG 128 (166)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEeCCC
Confidence 00 12378899999999988774 5788999975
No 122
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=42.51 E-value=7 Score=31.37 Aligned_cols=29 Identities=34% Similarity=0.461 Sum_probs=23.4
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHHHHHhcCC
Q 001080 117 GHQNVLLMHCERGGWPVLAFMLAALLIYRKQF 148 (1162)
Q Consensus 117 d~~nVVvVHCkaG~GR~tG~~ia~yLly~~~~ 148 (1162)
-+..|++|.|.-|. .|+.|.|.++|+++.
T Consensus 6 lp~GVIlVF~lVgl---v~i~iva~~iYRKw~ 34 (43)
T PF08114_consen 6 LPGGVILVFCLVGL---VGIGIVALFIYRKWQ 34 (43)
T ss_pred CCCCeeeehHHHHH---HHHHHHHHHHHHHHH
Confidence 36689999999765 688888899988863
No 123
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=42.48 E-value=94 Score=31.06 Aligned_cols=95 Identities=11% Similarity=0.171 Sum_probs=51.9
Q ss_pred CCCceeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccc-eeecccCceEEEEccCC-cc-cC
Q 001080 198 LDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLV-RHYKQADCELVKIDIHC-HI-QG 274 (1162)
Q Consensus 198 ~~~~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~-r~y~~~d~~~i~~~i~~-~v-~G 274 (1162)
....|.+.-+.-++++..+..+.|.||++|+-... ......+.|....++. -.| ++.|.|.+.. .+ ..
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~-----~~~~~~~kT~v~~~t~~P~w----ne~F~f~i~~~~~~~~ 83 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYK-----DKRVEKKKTVIKKRTLNPVF----NESFIFNIPLERLRET 83 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeC-----CCccccccCcceeCCCCCcc----cceEEEeCCHHHhCCC
Confidence 34567777788888887777778999999985310 0000122222111111 112 1335565532 23 23
Q ss_pred cEEEEEEeCCCccccCceEEEEEeeccc
Q 001080 275 DVVLECISLDSDQEREEMMFRVMFNTAF 302 (1162)
Q Consensus 275 DV~I~~~h~~~~~~~~~~mFr~~FnT~F 302 (1162)
-+.|++++.+. .++++.|.++.|...-
T Consensus 84 ~l~~~v~d~~~-~~~~~~lG~~~i~~~~ 110 (136)
T cd08405 84 TLIITVMDKDR-LSRNDLIGKIYLGWKS 110 (136)
T ss_pred EEEEEEEECCC-CCCCcEeEEEEECCcc
Confidence 47788888764 3455677777765443
No 124
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=41.92 E-value=1.6e+02 Score=29.58 Aligned_cols=95 Identities=13% Similarity=0.127 Sum_probs=51.3
Q ss_pred CCCceeEEEEEEeeccccCCC-CcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCC-cccC
Q 001080 198 LDRALTLDCVILRVIPNFDGE-GGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHC-HIQG 274 (1162)
Q Consensus 198 ~~~~l~L~~IiL~~iP~f~~~-~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~-~v~G 274 (1162)
....|.+.-+..++++..+.. |.|.||++||-... .....-+.|....++.. .| ++.|.|++.. .+.+
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~-----~~~~~k~kT~v~~~t~nPvf----NE~F~f~v~~~~l~~ 83 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPD-----KSHNSKRKTAVKKGTVNPVF----NETLKYVVEADLLSS 83 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeC-----CcccceeecccccCCCCCcc----ceEEEEEcCHHHhCC
Confidence 345677777888888877764 78999999996421 11111122222111111 12 2457777632 3444
Q ss_pred -cEEEEEEeCCCccccCceEEEEEeeccc
Q 001080 275 -DVVLECISLDSDQEREEMMFRVMFNTAF 302 (1162)
Q Consensus 275 -DV~I~~~h~~~~~~~~~~mFr~~FnT~F 302 (1162)
.+.|.+++.+. ..+++.|..+.|.-+-
T Consensus 84 ~~L~v~V~~~~~-~~~~~~lG~~~i~L~~ 111 (128)
T cd08392 84 RQLQVSVWHSRT-LKRRVFLGEVLIPLAD 111 (128)
T ss_pred cEEEEEEEeCCC-CcCcceEEEEEEEcCC
Confidence 56667777653 3344556655555433
No 125
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=41.45 E-value=2e+02 Score=27.63 Aligned_cols=88 Identities=14% Similarity=0.163 Sum_probs=48.0
Q ss_pred eeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccc-eeecccCceEEEEccCCcccCcEEEEE
Q 001080 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLV-RHYKQADCELVKIDIHCHIQGDVVLEC 280 (1162)
Q Consensus 202 l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~-r~y~~~d~~~i~~~i~~~v~GDV~I~~ 280 (1162)
|.+.=+.-++++..+..+.|.||++|+..+. .+.|....++. -.|. +.+.|.+. .+..-+.|++
T Consensus 3 l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~----------~~~T~~~~~t~nP~W~----e~f~~~~~-~~~~~l~~~v 67 (119)
T cd08377 3 LQVKVIRASGLAAADIGGKSDPFCVLELVNA----------RLQTHTIYKTLNPEWN----KIFTFPIK-DIHDVLEVTV 67 (119)
T ss_pred EEEEEEeeeCCCCCCCCCCCCcEEEEEECCE----------eeecceecCCcCCccC----cEEEEEec-CcCCEEEEEE
Confidence 3444444456676666677999999987531 23332211111 1121 22444442 1344567788
Q ss_pred EeCCCccccCceEEEEEeecccccC
Q 001080 281 ISLDSDQEREEMMFRVMFNTAFIRS 305 (1162)
Q Consensus 281 ~h~~~~~~~~~~mFr~~FnT~FI~~ 305 (1162)
|+.+. .++...|.++.|...-+..
T Consensus 68 ~d~~~-~~~~~~iG~~~~~l~~~~~ 91 (119)
T cd08377 68 YDEDK-DKKPEFLGKVAIPLLSIKN 91 (119)
T ss_pred EECCC-CCCCceeeEEEEEHHHCCC
Confidence 88763 3345678888887666653
No 126
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=41.43 E-value=1.4e+02 Score=27.78 Aligned_cols=77 Identities=12% Similarity=0.057 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCCCccccccccccccCcEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEE
Q 001080 45 GGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLM 124 (1162)
Q Consensus 45 ~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f~~~v~~~P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~nVVvV 124 (1162)
.++.+.|++... ++.|+.+++...+ .. -|+|- -.+. ++..+.. .+ .++....+..|++
T Consensus 4 ~~l~~~~~~~~~--~~~liDvR~~~e~-------~~-----ghipg-a~~i---p~~~l~~---~~-~~~~~~~~~~iv~ 61 (95)
T cd01534 4 AELARWAAEGDR--TVYRFDVRTPEEY-------EA-----GHLPG-FRHT---PGGQLVQ---ET-DHFAPVRGARIVL 61 (95)
T ss_pred HHHHHHHHcCCC--CeEEEECCCHHHH-------Hh-----CCCCC-cEeC---CHHHHHH---HH-HHhcccCCCeEEE
Confidence 456666765322 3888898876432 11 12221 0112 2333322 22 2333334567999
Q ss_pred EecCCCCchHHHHHHHHHHHhc
Q 001080 125 HCERGGWPVLAFMLAALLIYRK 146 (1162)
Q Consensus 125 HCkaG~GR~tG~~ia~yLly~~ 146 (1162)
+|..|. | + ..+|.+|...|
T Consensus 62 ~c~~G~-r-s-~~aa~~L~~~G 80 (95)
T cd01534 62 ADDDGV-R-A-DMTASWLAQMG 80 (95)
T ss_pred ECCCCC-h-H-HHHHHHHHHcC
Confidence 998765 5 3 34455554433
No 127
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=41.38 E-value=2e+02 Score=27.87 Aligned_cols=89 Identities=12% Similarity=0.130 Sum_probs=46.6
Q ss_pred eeEEEEEEeeccccCCC-CcceeEEEEEecCCCcccCCCCcEEEecccccccc-eeecccCceEEEEccCCcccCcEEEE
Q 001080 202 LTLDCVILRVIPNFDGE-GGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLV-RHYKQADCELVKIDIHCHIQGDVVLE 279 (1162)
Q Consensus 202 l~L~~IiL~~iP~f~~~-~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~-r~y~~~d~~~i~~~i~~~v~GDV~I~ 279 (1162)
|.+.=+.-++++..+.. +.+.||++|+-.+. ...+.|....++. -.|. +.+.|.+. ....-+.|+
T Consensus 4 l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~--------~~~~kT~~~~~~~~P~Wn----e~~~~~v~-~~~~~l~~~ 70 (124)
T cd04044 4 LAVTIKSARGLKGSDIIGGTVDPYVTFSISNR--------RELARTKVKKDTSNPVWN----ETKYILVN-SLTEPLNLT 70 (124)
T ss_pred EEEEEEcccCCCcccccCCCCCCeEEEEECCC--------CcceEeeeecCCCCCcce----EEEEEEeC-CCCCEEEEE
Confidence 33433444455543322 34899999987541 1233332211111 1121 23455554 345567788
Q ss_pred EEeCCCccccCceEEEEEeeccccc
Q 001080 280 CISLDSDQEREEMMFRVMFNTAFIR 304 (1162)
Q Consensus 280 ~~h~~~~~~~~~~mFr~~FnT~FI~ 304 (1162)
||+.+.. .....|.++.|.-.=+.
T Consensus 71 v~d~~~~-~~d~~iG~~~~~l~~l~ 94 (124)
T cd04044 71 VYDFNDK-RKDKLIGTAEFDLSSLL 94 (124)
T ss_pred EEecCCC-CCCceeEEEEEEHHHhc
Confidence 8887642 34567888887755444
No 128
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=41.29 E-value=1.3e+02 Score=29.94 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=26.0
Q ss_pred CCCceeEEEEEEeeccccCCC-CcceeEEEEEec
Q 001080 198 LDRALTLDCVILRVIPNFDGE-GGCCPIFRIYGQ 230 (1162)
Q Consensus 198 ~~~~l~L~~IiL~~iP~f~~~-~gcrP~~~Iy~~ 230 (1162)
....|+++=|..++++..+.. +.|.||++|+-.
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~ 47 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLL 47 (128)
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEe
Confidence 345678888888899988875 779999999753
No 129
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=40.37 E-value=1.4e+02 Score=32.36 Aligned_cols=42 Identities=19% Similarity=0.319 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEecCCCCch--HHHHHHHHHHHhc
Q 001080 104 HHFLRSSESWLSLGHQNVLLMHCERGGWPV--LAFMLAALLIYRK 146 (1162)
Q Consensus 104 ~~~~~~i~~wL~~d~~nVVvVHCkaG~GR~--tG~~ia~yLly~~ 146 (1162)
.++++.+.+++....++- ++-|..|+.|. .|+++||+|...+
T Consensus 72 ~~~~~~v~~~i~~~~~~~-v~vnlsgG~R~l~~~~~~a~~~~~~~ 115 (203)
T TIGR01884 72 PSILRQMSDIIKEEREPR-VIINLSGGMRILILILLLLAILVKTR 115 (203)
T ss_pred HHHHHHHHHHHHhcccCc-EEEEcCCCchHHHHHHHHHHHhcccc
Confidence 355566666666655544 44465665563 4567777777443
No 130
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.24 E-value=3.1e+02 Score=27.76 Aligned_cols=92 Identities=20% Similarity=0.219 Sum_probs=50.1
Q ss_pred CeeeecCceEEeccCCCCCCcchHHhhcChHHHHHHHHHhCCCCcEEEEecCCCCcc-cc-----ccccccccCcEEeeC
Q 001080 15 GLLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQ-SQ-----IGQVLSEYDMTVMDY 88 (1162)
Q Consensus 15 DLtyIT~RIiam~~~fP~~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NL~~~~~~-~~-----~~~~~s~f~~~v~~~ 88 (1162)
|+..|++++.|- +-+ +++|+.++=..-|+ .|+|.+..... .+ +.......++...+.
T Consensus 2 ~i~~I~d~lsVs--gQi-----------~~~D~~~iaa~GFk----siI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~i 64 (130)
T COG3453 2 DIRRINDRLSVS--GQI-----------SPADIASIAALGFK----SIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHI 64 (130)
T ss_pred Cceecccceeec--CCC-----------CHHHHHHHHHhccc----eecccCCCCCCCCCCChHHHHHHHHhcCCceEEe
Confidence 567788888776 322 23444444333332 25565544332 11 111223456666666
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCc
Q 001080 89 PRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWP 132 (1162)
Q Consensus 89 P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR 132 (1162)
|..-.+ .+-+.+..|.+.|++ -+.-|+.||+.|. |
T Consensus 65 PV~~~~---iT~~dV~~f~~Al~e-----aegPVlayCrsGt-R 99 (130)
T COG3453 65 PVTGGG---ITEADVEAFQRALDE-----AEGPVLAYCRSGT-R 99 (130)
T ss_pred ecCCCC---CCHHHHHHHHHHHHH-----hCCCEEeeecCCc-h
Confidence 654433 256667666666654 2356999999776 6
No 131
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=39.89 E-value=2.3e+02 Score=29.16 Aligned_cols=84 Identities=13% Similarity=0.047 Sum_probs=45.8
Q ss_pred eeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccc-eeecccCceEEEEccCCcccCcEEEEE
Q 001080 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLV-RHYKQADCELVKIDIHCHIQGDVVLEC 280 (1162)
Q Consensus 202 l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~-r~y~~~d~~~i~~~i~~~v~GDV~I~~ 280 (1162)
|+++=|.-++++..+. +.|.||++|+-++ ..+.|....++. -.|. +.|.|.+.-. ..-|.|+|
T Consensus 4 L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~----------~~~kT~vvk~t~nP~Wn----E~f~f~i~~~-~~~l~~~V 67 (145)
T cd04038 4 LKVRVVRGTNLAVRDF-TSSDPYVVLTLGN----------QKVKTRVIKKNLNPVWN----EELTLSVPNP-MAPLKLEV 67 (145)
T ss_pred EEEEEEeeECCCCCCC-CCcCcEEEEEECC----------EEEEeeeEcCCCCCeec----ccEEEEecCC-CCEEEEEE
Confidence 3444344445666565 6799999998653 123332211111 1221 2255554322 55678899
Q ss_pred EeCCCccccCceEEEEEeeccc
Q 001080 281 ISLDSDQEREEMMFRVMFNTAF 302 (1162)
Q Consensus 281 ~h~~~~~~~~~~mFr~~FnT~F 302 (1162)
|+.+. .+....|.++.|...=
T Consensus 68 ~D~d~-~~~dd~iG~a~i~l~~ 88 (145)
T cd04038 68 FDKDT-FSKDDSMGEAEIDLEP 88 (145)
T ss_pred EECCC-CCCCCEEEEEEEEHHH
Confidence 98864 3445678777776443
No 132
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=39.33 E-value=43 Score=40.99 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEecCCCCchHHHHHHH
Q 001080 101 ETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAA 140 (1162)
Q Consensus 101 ~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR~tG~~ia~ 140 (1162)
..|-++|..+..+|..+.++-|+|+|..|+-..-|+++|.
T Consensus 358 ~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaI 397 (451)
T PF04179_consen 358 KALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAI 397 (451)
T ss_pred HHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHH
Confidence 4455677777778888777889999999986633444333
No 133
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=38.54 E-value=2.2e+02 Score=27.70 Aligned_cols=83 Identities=12% Similarity=0.057 Sum_probs=41.6
Q ss_pred eeEEEEEEeeccccCC--CCcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCCcccCcEEE
Q 001080 202 LTLDCVILRVIPNFDG--EGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCHIQGDVVL 278 (1162)
Q Consensus 202 l~L~~IiL~~iP~f~~--~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~~v~GDV~I 278 (1162)
|++.-+.-++++..+. .+.|.||++|+..+ ..+.|....++.. .|. +.|.|.+...-..-+.|
T Consensus 3 l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~----------~~~kT~~~~~t~~P~Wn----e~f~~~~~~~~~~~l~i 68 (128)
T cd04024 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA----------QRFKTQTIPNTLNPKWN----YWCEFPIFSAQNQLLKL 68 (128)
T ss_pred EEEEEEEeeCCCcccCCCCCCcCCeEEEEECC----------EEEecceecCCcCCccC----CcEEEEecCCCCCEEEE
Confidence 3444444556676665 56799999998643 2344432211111 121 12444443222345667
Q ss_pred EEEeCCCccccCceEEEEEee
Q 001080 279 ECISLDSDQEREEMMFRVMFN 299 (1162)
Q Consensus 279 ~~~h~~~~~~~~~~mFr~~Fn 299 (1162)
+||+.+. .+....|.++.|.
T Consensus 69 ~v~d~~~-~~~~~~lG~~~i~ 88 (128)
T cd04024 69 ILWDKDR-FAGKDYLGEFDIA 88 (128)
T ss_pred EEEECCC-CCCCCcceEEEEE
Confidence 7887653 2233445555444
No 134
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=38.34 E-value=53 Score=31.99 Aligned_cols=29 Identities=14% Similarity=0.044 Sum_probs=18.5
Q ss_pred hCCCcEEEEEecCCCCchHHHHHHHHHHHhc
Q 001080 116 LGHQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1162)
Q Consensus 116 ~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~ 146 (1162)
.+.+..|+|+|.+| |+ .+..++.+|.+.|
T Consensus 76 ~~~~~~vv~~c~~g-~~-~a~~~~~~l~~~G 104 (122)
T cd01448 76 ISNDDTVVVYDDGG-GF-FAARAWWTLRYFG 104 (122)
T ss_pred CCCCCEEEEECCCC-Cc-cHHHHHHHHHHcC
Confidence 35567899999887 34 3444555555555
No 135
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=38.00 E-value=67 Score=31.08 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCc
Q 001080 100 METVHHFLRSSESWLSLGHQNVLLMHCERGGWP 132 (1162)
Q Consensus 100 L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~GR 132 (1162)
+..+...+..+..++..+....|++||..|+.|
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~iv~~C~~~g~r 79 (113)
T cd01443 47 AQSCYQTLPQVYALFSLAGVKLAIFYCGSSQGR 79 (113)
T ss_pred hhHHHHHHHHHHHHhhhcCCCEEEEECCCCCcc
Confidence 344433333333334334557899999876555
No 136
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=37.71 E-value=2.5e+02 Score=27.14 Aligned_cols=86 Identities=10% Similarity=0.101 Sum_probs=45.3
Q ss_pred eeEEEEEEeeccccCC---C-CcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCC-cccCc
Q 001080 202 LTLDCVILRVIPNFDG---E-GGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHC-HIQGD 275 (1162)
Q Consensus 202 l~L~~IiL~~iP~f~~---~-~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~-~v~GD 275 (1162)
|.++=+.-++++..+. . +.|-||++|+-.. ..|.|....+++. .|. +.+.|.+.- ...-.
T Consensus 3 l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~----------~~~kT~v~~~t~nPvWn----e~f~f~v~~~~~~~~ 68 (108)
T cd04039 3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR----------RVFRTSWRRHTLNPVFN----ERLAFEVYPHEKNFD 68 (108)
T ss_pred EEEEEEeeeCCCCccccCCCCCccCceEEEEECC----------EeEeeeeecCCCCCccc----ceEEEEEeCccCCCE
Confidence 4555566666776542 1 3489999998642 2344433222221 222 224454421 11224
Q ss_pred EEEEEEeCCCccccCceEEEEEeeccc
Q 001080 276 VVLECISLDSDQEREEMMFRVMFNTAF 302 (1162)
Q Consensus 276 V~I~~~h~~~~~~~~~~mFr~~FnT~F 302 (1162)
|.|+||+.+. .++...|.++.|.-.=
T Consensus 69 L~~~V~D~d~-~~~dd~IG~~~l~L~~ 94 (108)
T cd04039 69 IQFKVLDKDK-FSFNDYVATGSLSVQE 94 (108)
T ss_pred EEEEEEECCC-CCCCcceEEEEEEHHH
Confidence 6678888764 3456677777766443
No 137
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=37.22 E-value=1.1e+02 Score=30.94 Aligned_cols=92 Identities=13% Similarity=0.153 Sum_probs=51.7
Q ss_pred CCCCceeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEE--Eecccccccce-eecccCceEEEEccCC-cc
Q 001080 197 PLDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVL--FSTPKRSKLVR-HYKQADCELVKIDIHC-HI 272 (1162)
Q Consensus 197 p~~~~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l--yss~~~~~~~r-~y~~~d~~~i~~~i~~-~v 272 (1162)
+....|.+.-+..++++..+ .++|.+|++|+-... .+.+ ..|....++.. .| ++.|.|++.- .|
T Consensus 12 ~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~-------~~~~~~~kT~v~~~~~nP~f----nE~F~f~i~~~~l 79 (137)
T cd08409 12 PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIH-------NKVVKTKKTEVVDGAASPSF----NESFSFKVTSRQL 79 (137)
T ss_pred CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEEC-------CEEeeeeecccEeCCCCCcc----cceEEEECCHHHh
Confidence 34456888888888888877 678999999985421 1111 11111101110 12 2347777642 23
Q ss_pred c-CcEEEEEEeCCCccccCceEEEEEeecc
Q 001080 273 Q-GDVVLECISLDSDQEREEMMFRVMFNTA 301 (1162)
Q Consensus 273 ~-GDV~I~~~h~~~~~~~~~~mFr~~FnT~ 301 (1162)
. --+.|++++.+. ..+++.|.++.+.-.
T Consensus 80 ~~~~L~~~V~~~~~-~~~~~~lG~v~ig~~ 108 (137)
T cd08409 80 DTASLSLSVMQSGG-VRKSKLLGRVVLGPF 108 (137)
T ss_pred CccEEEEEEEeCCC-CCCcceEEEEEECCc
Confidence 3 235667777664 445667888777643
No 138
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=37.17 E-value=2.3e+02 Score=27.92 Aligned_cols=85 Identities=18% Similarity=0.230 Sum_probs=43.8
Q ss_pred eeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccc-eeecccCceEEEEccCCcccCcEEEEE
Q 001080 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLV-RHYKQADCELVKIDIHCHIQGDVVLEC 280 (1162)
Q Consensus 202 l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~-r~y~~~d~~~i~~~i~~~v~GDV~I~~ 280 (1162)
|.+.-+.-++++..+..+.|.||++|+-.+ +.++.|.....+. -.|. +.+.|.+.-. .--+.|+|
T Consensus 3 L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~---------~~~~kT~~~~~t~~P~Wn----e~f~~~v~~~-~~~L~v~v 68 (120)
T cd04045 3 LRLHIRKANDLKNLEGVGKIDPYVRVLVNG---------IVKGRTVTISNTLNPVWD----EVLYVPVTSP-NQKITLEV 68 (120)
T ss_pred EEEEEEeeECCCCccCCCCcCCEEEEEECC---------EEeeceeEECCCcCCccC----ceEEEEecCC-CCEEEEEE
Confidence 334444445667766667899999999743 2344443211111 1221 2233433211 22456677
Q ss_pred EeCCCccccCceEEEEEeecc
Q 001080 281 ISLDSDQEREEMMFRVMFNTA 301 (1162)
Q Consensus 281 ~h~~~~~~~~~~mFr~~FnT~ 301 (1162)
|+.+. ..+...|.++.|.-.
T Consensus 69 ~d~~~-~~~d~~IG~~~~~l~ 88 (120)
T cd04045 69 MDYEK-VGKDRSLGSVEINVS 88 (120)
T ss_pred EECCC-CCCCCeeeEEEEeHH
Confidence 87653 334556777777633
No 139
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=37.04 E-value=3.8e+02 Score=25.58 Aligned_cols=83 Identities=14% Similarity=0.037 Sum_probs=41.2
Q ss_pred EEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccceeecccCceEEEEccCCcccCcE--EEEEE
Q 001080 204 LDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVRHYKQADCELVKIDIHCHIQGDV--VLECI 281 (1162)
Q Consensus 204 L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r~y~~~d~~~i~~~i~~~v~GDV--~I~~~ 281 (1162)
+.=|.-++++.. +.|.||++|+-.+ +.++.|....+.--.| ++.+.|++.-.-.++. .|.++
T Consensus 4 v~vi~a~~l~~~---~~~dpyv~v~~~~---------~~~~kT~~~~~~~P~W----ne~f~f~v~~~~~~~~~l~i~v~ 67 (117)
T cd08383 4 LRILEAKNLPSK---GTRDPYCTVSLDQ---------VEVARTKTVEKLNPFW----GEEFVFDDPPPDVTFFTLSFYNK 67 (117)
T ss_pred EEEEEecCCCcC---CCCCceEEEEECC---------EEeEecceEECCCCcc----cceEEEecCCccccEEEEEEEEE
Confidence 333333455543 6799999998753 2345554321111112 1236666533222434 44445
Q ss_pred eCCCccccCceEEEEEeecccc
Q 001080 282 SLDSDQEREEMMFRVMFNTAFI 303 (1162)
Q Consensus 282 h~~~~~~~~~~mFr~~FnT~FI 303 (1162)
+.+. ......+.++.+....+
T Consensus 68 d~~~-~~~~~~~g~v~l~~~~~ 88 (117)
T cd08383 68 DKRS-KDRDIVIGKVALSKLDL 88 (117)
T ss_pred eccc-CCCeeEEEEEEecCcCC
Confidence 5432 23345677777776665
No 140
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=36.84 E-value=1.6e+02 Score=32.94 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=27.9
Q ss_pred ccccCcEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 001080 78 LSEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMH 125 (1162)
Q Consensus 78 ~s~f~~~v~~~P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~nVVvVH 125 (1162)
+-+||+.++. +-+.+.++++.+..|.+.+.+.|||+|
T Consensus 3 ViK~GGs~l~-----------~~~~~~~~~~~I~~~~~~g~~~vvV~s 39 (244)
T cd04260 3 VQKFGGTSVS-----------TKERREQVAKKVKQAVDEGYKPVVVVS 39 (244)
T ss_pred EEEECchhcC-----------CHHHHHHHHHHHHHHHHCCCCeEEEEE
Confidence 3467777664 347789999999999888777677777
No 141
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=36.70 E-value=1.6e+02 Score=30.81 Aligned_cols=95 Identities=14% Similarity=0.086 Sum_probs=54.4
Q ss_pred CceeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccC--CcccC-c
Q 001080 200 RALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIH--CHIQG-D 275 (1162)
Q Consensus 200 ~~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~--~~v~G-D 275 (1162)
..|+++-+.-++++..+..+.|.||++||-... ......+.|....++.. .|. +.|.|.+- ..+.. .
T Consensus 27 g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~-----~~~~~~~kT~vi~~t~nP~Wn----E~f~f~~~~~~~l~~~~ 97 (162)
T cd04020 27 GELHVWVKEAKNLPALKSGGTSDSFVKCYLLPD-----KSKKSKQKTPVVKKSVNPVWN----HTFVYDGVSPEDLSQAC 97 (162)
T ss_pred ceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcC-----CCCCcceeCCccCCCCCCCCC----CEEEEecCCHHHhCCCE
Confidence 457777777788888777778999999975321 11223444432222211 221 23555531 12332 3
Q ss_pred EEEEEEeCCCccccCceEEEEEeeccccc
Q 001080 276 VVLECISLDSDQEREEMMFRVMFNTAFIR 304 (1162)
Q Consensus 276 V~I~~~h~~~~~~~~~~mFr~~FnT~FI~ 304 (1162)
+.|+||+.+. .++...|.++.|+.+=+.
T Consensus 98 L~i~V~d~d~-~~~d~~lG~v~i~l~~~~ 125 (162)
T cd04020 98 LELTVWDHDK-LSSNDFLGGVRLGLGTGK 125 (162)
T ss_pred EEEEEEeCCC-CCCCceEEEEEEeCCccc
Confidence 6788888764 345677888887765543
No 142
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=36.67 E-value=2.9e+02 Score=26.76 Aligned_cols=96 Identities=11% Similarity=0.062 Sum_probs=51.2
Q ss_pred eeEEEEEEeeccccC--CCCcceeEEEEEecCCCcccCCCCcEEEeccccccc--ceeecccCceEEEEccCCcccCcEE
Q 001080 202 LTLDCVILRVIPNFD--GEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKL--VRHYKQADCELVKIDIHCHIQGDVV 277 (1162)
Q Consensus 202 l~L~~IiL~~iP~f~--~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~--~r~y~~~d~~~i~~~i~~~v~GDV~ 277 (1162)
|.+.=|.-++++..+ ..+.+.||++|+-.+... .....+.|...... --.| ++.+.|.+...-...+.
T Consensus 4 l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~----~~~~~~kT~~~~~~~~~P~w----~e~f~f~~~~~~~~~l~ 75 (128)
T cd00275 4 LTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPA----DDSAKFKTKVVKNNGFNPVW----NETFEFDVTVPELAFLR 75 (128)
T ss_pred EEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCC----CCCCcEeeeeecCCCcCCcc----CCcEEEEEeCCCeEEEE
Confidence 344444445677666 356789999998753210 01122333221111 1122 12355554332234578
Q ss_pred EEEEeCCCccccCceEEEEEeecccccCCE
Q 001080 278 LECISLDSDQEREEMMFRVMFNTAFIRSNI 307 (1162)
Q Consensus 278 I~~~h~~~~~~~~~~mFr~~FnT~FI~~n~ 307 (1162)
|.+|+.+.. +...|.++.+.-.-+.++.
T Consensus 76 ~~V~d~~~~--~~~~iG~~~~~l~~l~~g~ 103 (128)
T cd00275 76 FVVYDEDSG--DDDFLGQACLPLDSLRQGY 103 (128)
T ss_pred EEEEeCCCC--CCcEeEEEEEEhHHhcCce
Confidence 888887753 5667888888877776553
No 143
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=35.98 E-value=3.3e+02 Score=26.55 Aligned_cols=86 Identities=8% Similarity=0.055 Sum_probs=43.2
Q ss_pred eeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCCcccCcEEEEE
Q 001080 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCHIQGDVVLEC 280 (1162)
Q Consensus 202 l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~~v~GDV~I~~ 280 (1162)
|++.=+.-++++..+..+.+.||++|+..+. .+.++.|....++.. .|. +.|.|.+...-..-+.|+|
T Consensus 3 ~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~-------~~~~~kT~~~~~t~~P~Wn----e~f~f~i~~~~~~~L~i~v 71 (126)
T cd04043 3 FTIRIVRAENLKADSSNGLSDPYVTLVDTNG-------KRRIAKTRTIYDTLNPRWD----EEFELEVPAGEPLWISATV 71 (126)
T ss_pred EEEEEEEeECCCCCCCCCCCCceEEEEECCC-------CeeeecccEecCCCCCccc----ceEEEEcCCCCCCEEEEEE
Confidence 3444455556776666566889999985421 123444433222111 121 2355554332223456677
Q ss_pred EeCCCccccCceEEEEEee
Q 001080 281 ISLDSDQEREEMMFRVMFN 299 (1162)
Q Consensus 281 ~h~~~~~~~~~~mFr~~Fn 299 (1162)
|+.+. .+....|.++.|.
T Consensus 72 ~d~d~-~~~~~~iG~~~i~ 89 (126)
T cd04043 72 WDRSF-VGKHDLCGRASLK 89 (126)
T ss_pred EECCC-CCCCceEEEEEEe
Confidence 77653 2244455555554
No 144
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=35.61 E-value=1.1e+02 Score=36.25 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=15.2
Q ss_pred CCCcEEEEEecCCCCchHHHHHH
Q 001080 117 GHQNVLLMHCERGGWPVLAFMLA 139 (1162)
Q Consensus 117 d~~nVVvVHCkaG~GR~tG~~ia 139 (1162)
+.+..|+|||..|-.| |+.+.+
T Consensus 229 ~~~~~Vlvh~~dGwDr-t~q~~s 250 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDR-TSQLSS 250 (353)
T ss_dssp TT--EEEEECTTSSSH-HHHHHH
T ss_pred ccCceEEEEcCCCCcc-cHHHHH
Confidence 4567899999999877 766544
No 145
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=35.11 E-value=2e+02 Score=28.95 Aligned_cols=77 Identities=6% Similarity=-0.100 Sum_probs=41.3
Q ss_pred eccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccc-eeecccCceEEEEcc-CCcccCcEEEEEEeCCCccc
Q 001080 211 VIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLV-RHYKQADCELVKIDI-HCHIQGDVVLECISLDSDQE 288 (1162)
Q Consensus 211 ~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~-r~y~~~d~~~i~~~i-~~~v~GDV~I~~~h~~~~~~ 288 (1162)
+++. +..+.+.||++||..+. +|.|....++. -.|. +.|.|.. .......+.|+||+.+. .+
T Consensus 39 ~L~~-d~~g~~DPYVkV~~~~~----------~~kT~vi~~t~nPvWN----E~F~f~~~~~~~~~~L~v~V~D~d~-~s 102 (127)
T cd04032 39 GLWG-DYFTSTDGYVKVFFGGQ----------EKRTEVIWNNNNPRWN----ATFDFGSVELSPGGKLRFEVWDRDN-GW 102 (127)
T ss_pred CCCc-CcCCCCCeEEEEEECCc----------cccCceecCCCCCcCC----CEEEEecccCCCCCEEEEEEEeCCC-CC
Confidence 4442 33467899999997542 33332211111 1121 2355542 22235577888998764 33
Q ss_pred cCceEEEEEeecccc
Q 001080 289 REEMMFRVMFNTAFI 303 (1162)
Q Consensus 289 ~~~~mFr~~FnT~FI 303 (1162)
+.+.|.++.|.-.-+
T Consensus 103 ~dd~IG~~~i~l~~~ 117 (127)
T cd04032 103 DDDLLGTCSVVPEAG 117 (127)
T ss_pred CCCeeEEEEEEecCC
Confidence 556777777765543
No 146
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=34.89 E-value=2.7e+02 Score=27.41 Aligned_cols=94 Identities=16% Similarity=0.090 Sum_probs=52.7
Q ss_pred CceeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEcc-CC-cccC-c
Q 001080 200 RALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDI-HC-HIQG-D 275 (1162)
Q Consensus 200 ~~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i-~~-~v~G-D 275 (1162)
..|.+.=|.-++++..+ .+.|.||++||-... .....-+.|....++.. .| ++.|.|++ .. .+.+ -
T Consensus 13 ~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~-----~~~~~~~kT~v~~~~~nP~w----nE~F~f~~~~~~~l~~~~ 82 (122)
T cd08381 13 GTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPD-----PQKTTKRKTKVVRKTRNPTF----NEMLVYDGLPVEDLQQRV 82 (122)
T ss_pred CEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeC-----CccCCceeCCccCCCCCCCc----ccEEEEecCChHHhCCCE
Confidence 45777777888888888 678999999986421 00011222222111111 22 13466765 22 2444 3
Q ss_pred EEEEEEeCCCccccCceEEEEEeeccccc
Q 001080 276 VVLECISLDSDQEREEMMFRVMFNTAFIR 304 (1162)
Q Consensus 276 V~I~~~h~~~~~~~~~~mFr~~FnT~FI~ 304 (1162)
+.|.+++.+. ..+...|.++.|+-.-+.
T Consensus 83 L~~~V~d~d~-~~~~~~lG~~~i~l~~l~ 110 (122)
T cd08381 83 LQVSVWSHDS-LVENEFLGGVCIPLKKLD 110 (122)
T ss_pred EEEEEEeCCC-CcCCcEEEEEEEeccccc
Confidence 4567888764 345567777777766554
No 147
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=34.18 E-value=1.4e+02 Score=29.82 Aligned_cols=36 Identities=14% Similarity=0.090 Sum_probs=27.3
Q ss_pred CCCCCCceeEEEEEEeeccccCCCCcceeEEEEEec
Q 001080 195 WPPLDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQ 230 (1162)
Q Consensus 195 ~pp~~~~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~ 230 (1162)
|-+....|.+.=+..+++...+..+.|.||++||-.
T Consensus 9 Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Ll 44 (124)
T cd08680 9 YDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALL 44 (124)
T ss_pred ECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEc
Confidence 334455677777778888887777889999999954
No 148
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=34.01 E-value=4.7e+02 Score=25.75 Aligned_cols=75 Identities=9% Similarity=0.140 Sum_probs=39.4
Q ss_pred eeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCCcccCcEEEEEEeCCCccc
Q 001080 210 RVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCHIQGDVVLECISLDSDQE 288 (1162)
Q Consensus 210 ~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~~v~GDV~I~~~h~~~~~~ 288 (1162)
+++...+..|.|.||++|+..+. .+.|....++.. .|. +.+.|.+. ...-.|.|+||+.+..
T Consensus 13 ~~L~~~d~~g~~dPyv~v~~~~~----------~~kT~v~~~t~nP~Wn----e~f~f~~~-~~~~~l~i~V~d~~~~-- 75 (126)
T cd04046 13 EGLSKQDSGGGADPYVIIKCEGE----------SVRSPVQKDTLSPEFD----TQAIFYRK-KPRSPIKIQVWNSNLL-- 75 (126)
T ss_pred cCCCCCCCCCCcCccEEEEECCE----------EEEeCccCCCCCCccc----ceEEEEec-CCCCEEEEEEEECCCC--
Confidence 34555555577999999986541 234432221111 221 22334332 1244678889987642
Q ss_pred cCceEEEEEeecc
Q 001080 289 REEMMFRVMFNTA 301 (1162)
Q Consensus 289 ~~~~mFr~~FnT~ 301 (1162)
....|.++.|.-.
T Consensus 76 ~d~~lG~~~~~l~ 88 (126)
T cd04046 76 CDEFLGQATLSAD 88 (126)
T ss_pred CCCceEEEEEecc
Confidence 2456666666543
No 149
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=33.89 E-value=42 Score=37.23 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=44.6
Q ss_pred eEEeccCCCCCCcchHHhhcCh-HHHHHHHHHhCCCCcEEEEecCCCCccccccccccccCcEEeeCCCCCCCCC---CC
Q 001080 23 VFVFDCCFTTDILEEEEYKEYL-GGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCP---LL 98 (1162)
Q Consensus 23 Iiam~~~fP~~~~~e~~YRn~i-~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f~~~v~~~P~~d~~~P---~p 98 (1162)
||+| .|.||.|- -+| ..|++||+- .+ .+..|||+.+-+. ... +. -.++-|-|.+.. ..
T Consensus 14 ~ivm-VGLPArGK------s~ia~kl~ryL~w-~g-~~~~vFn~g~yRR--~~~------~~-~~~~~ff~p~n~~~~~~ 75 (222)
T PF01591_consen 14 VIVM-VGLPARGK------SYIARKLCRYLNW-LG-VKTKVFNVGDYRR--KLS------GA-PQDAEFFDPDNEEAKKL 75 (222)
T ss_dssp EEEE-ESSTTSSH------HHHHHHHHHHHHH-TT---EEEEEHHHHHH--HHH------SS--S-GGGGSTT-HHHHHH
T ss_pred EEEE-ECCCCCCH------HHHHHHHHHHHhh-cC-CCcceeeccccee--ccc------cc-ccccccCCCCChHHHHH
Confidence 4566 59999874 222 677889983 33 4699999976321 111 11 001111111110 00
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEEecC
Q 001080 99 TMETVHHFLRSSESWLSLGHQNVLLMHCER 128 (1162)
Q Consensus 99 ~L~~l~~~~~~i~~wL~~d~~nVVvVHCka 128 (1162)
-.+.....+++|..||+.+.++|++.=-..
T Consensus 76 R~~~a~~~l~dl~~~l~~~~G~VAI~DATN 105 (222)
T PF01591_consen 76 REQIAKEALEDLIEWLQEEGGQVAIFDATN 105 (222)
T ss_dssp HHHHHHHHHHHHHHHHHTS--SEEEEES--
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 113345678999999997766666664443
No 150
>cd08616 PI-PLCXD1c Catalytic domain of phosphatidylinositol-specific phospholipase C, X domain containing 1. This subfamily corresponds to the catalytic domain present in a group of phosphatidylinositol-specific phospholipase C X domain containing 1 (PI-PLCXD1), 2 (PI-PLCXD2) and 3 (PI-PLCXD3), which are bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) sequence homologs found in vertebrates. The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, members in this group contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to
Probab=33.71 E-value=40 Score=38.81 Aligned_cols=30 Identities=13% Similarity=0.149 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEecCCCC
Q 001080 102 TVHHFLRSSESWLSLGHQNVLLMHCERGGW 131 (1162)
Q Consensus 102 ~l~~~~~~i~~wL~~d~~nVVvVHCkaG~G 131 (1162)
.+.++++++.+||.++++.||+|+|+.-.|
T Consensus 98 ~~~~~L~~i~~fl~~~p~Evvil~~~~~~~ 127 (290)
T cd08616 98 LVKEILEEINDFLTEHPKEVVILDFNHFYG 127 (290)
T ss_pred hHHHHHHHHHHHHHHCCCcEEEEEEEccCC
Confidence 678899999999999999999999986543
No 151
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.86 E-value=93 Score=32.43 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.0
Q ss_pred chhhhcccCCCCCee-----eecCceEEe
Q 001080 3 LFRKFFYRKPPDGLL-----EISERVFVF 26 (1162)
Q Consensus 3 l~rr~~~~~~dlDLt-----yIT~RIiam 26 (1162)
|+.||+.++|++|.+ ...+|||-+
T Consensus 25 LLh~Fie~kfkDdssHTiGveFgSrIinV 53 (214)
T KOG0086|consen 25 LLHQFIENKFKDDSSHTIGVEFGSRIVNV 53 (214)
T ss_pred HHHHHHHhhhcccccceeeeeecceeeee
Confidence 789999999999984 456788877
No 152
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=32.76 E-value=2.1e+02 Score=35.46 Aligned_cols=57 Identities=18% Similarity=0.360 Sum_probs=39.7
Q ss_pred CCCcchhccccccccch----hhhccc-CCChhHHHHHHHhcCC-CCCCHHHHHHHHhhCCCH
Q 001080 1037 KPERVQLIELRRANNCE----IMLTKV-KIPLPDLMGSVLALDD-SALDIDQVDNLIKFCPTK 1093 (1162)
Q Consensus 1037 K~~~vslLD~kRaqNI~----I~L~k~-k~s~eeL~~aIl~lD~-~~L~~e~l~~Ll~~lPT~ 1093 (1162)
..++++|+|..-.+-++ |-|.-. .++.+|.+..|+.|+- ..+..+.+..|+++|-..
T Consensus 437 ~~e~~qI~D~T~~Nlv~frr~IYLti~SSldfeEaaHKLLKmkip~~q~~elc~mii~cc~Qe 499 (739)
T KOG2140|consen 437 DEEKLQIIDMTETNLVNFRRTIYLTIQSSLDFEEAAHKLLKMKIPESQEKELCNMIIDCCAQE 499 (739)
T ss_pred ccccceeeccccchhHHhhhhheeeeeccCcHHHHHHHHHhccCCchhhHHHHHHHHHHhhhH
Confidence 34578899876554333 222211 3789999999999985 367888899999988433
No 153
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=32.75 E-value=2.4e+02 Score=28.23 Aligned_cols=30 Identities=20% Similarity=0.054 Sum_probs=20.7
Q ss_pred eeEEEEEEeeccccCCCCcceeEEEEEecC
Q 001080 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQD 231 (1162)
Q Consensus 202 l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~ 231 (1162)
|+++-+.-++++..+..+.|.||++|+-.+
T Consensus 3 l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~ 32 (135)
T cd04017 3 LRAYIYQARDLLAADKSGLSDPFARVSFLN 32 (135)
T ss_pred EEEEEEEeecCcCCCCCCCCCCEEEEEECC
Confidence 344444455677767667899999998753
No 154
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=32.55 E-value=1.5e+02 Score=29.30 Aligned_cols=94 Identities=13% Similarity=0.131 Sum_probs=50.8
Q ss_pred CCCCceeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccceeecccCceEEEEc-cCCc-ccC
Q 001080 197 PLDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVRHYKQADCELVKID-IHCH-IQG 274 (1162)
Q Consensus 197 p~~~~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r~y~~~d~~~i~~~-i~~~-v~G 274 (1162)
.....|.++=|..++++..+..+.|.+|++++-... + +.-+.|......--.| ++.|.|+ +... +..
T Consensus 13 ~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~-----~--~~~~kTkv~~~~nP~f----nE~F~f~~i~~~~l~~ 81 (124)
T cd08389 13 PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPS-----K--KQRAKTKVQRGPNPVF----NETFTFSRVEPEELNN 81 (124)
T ss_pred CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccC-----C--cceeecccccCCCCcc----cCEEEECCCCHHHhcc
Confidence 345668888888899998887777899999876431 1 1123332211111112 2457776 4322 222
Q ss_pred -cEEEEEEeCCCccccCceEEEEEeeccc
Q 001080 275 -DVVLECISLDSDQEREEMMFRVMFNTAF 302 (1162)
Q Consensus 275 -DV~I~~~h~~~~~~~~~~mFr~~FnT~F 302 (1162)
-+.|.+++.+. .+++..|.++.|.-.-
T Consensus 82 ~~L~~~V~~~~~-~~~~~~lG~~~i~L~~ 109 (124)
T cd08389 82 MALRFRLYGVER-MRKERLIGEKVVPLSQ 109 (124)
T ss_pred CEEEEEEEECCC-cccCceEEEEEEeccc
Confidence 24456677653 3345555555544433
No 155
>PHA03378 EBNA-3B; Provisional
Probab=32.13 E-value=4.9e+02 Score=33.32 Aligned_cols=9 Identities=33% Similarity=0.667 Sum_probs=5.8
Q ss_pred CChHHHHHH
Q 001080 175 PLPSQLRYL 183 (1162)
Q Consensus 175 ~~PSQ~RYv 183 (1162)
++..|+||+
T Consensus 160 ~I~gQR~Wk 168 (991)
T PHA03378 160 PIAKQRRWK 168 (991)
T ss_pred CcccceeeE
Confidence 567777653
No 156
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=32.06 E-value=1.1e+02 Score=28.40 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=16.0
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHHHHHhc
Q 001080 117 GHQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1162)
Q Consensus 117 d~~nVVvVHCkaG~GR~tG~~ia~yLly~~ 146 (1162)
+.+..|+|+|..|. | ++. ++.+|...|
T Consensus 54 ~~~~~ivv~c~~g~-~-s~~-~~~~l~~~G 80 (96)
T cd01529 54 GRATRYVLTCDGSL-L-ARF-AAQELLALG 80 (96)
T ss_pred CCCCCEEEEeCChH-H-HHH-HHHHHHHcC
Confidence 45567999997553 5 444 444554433
No 157
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=31.65 E-value=3.3e+02 Score=26.87 Aligned_cols=94 Identities=15% Similarity=0.153 Sum_probs=49.5
Q ss_pred CceeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCCc-ccCcEE
Q 001080 200 RALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCH-IQGDVV 277 (1162)
Q Consensus 200 ~~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~~-v~GDV~ 277 (1162)
..|++.-+.-++++..+..+.|.||++|+.... ...+..+.|....++.. .| ++.+.|.+.-. ....+.
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~-----~~~~~~~rT~v~~~~~~P~w----ne~f~~~~~~~~~~~~l~ 83 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPD-----PKNETKQKTKTIKKTLNPVW----NETFTFDLKPADKDRRLS 83 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcC-----CCCCceecceeecCCCCCCc----cceEEEeCCchhcCCEEE
Confidence 446666666667777766677999999987521 01123444432211111 11 12344544211 344577
Q ss_pred EEEEeCCCccccCceEEEEEeecccc
Q 001080 278 LECISLDSDQEREEMMFRVMFNTAFI 303 (1162)
Q Consensus 278 I~~~h~~~~~~~~~~mFr~~FnT~FI 303 (1162)
|.+|+.+. ......+.++.|.-.-+
T Consensus 84 v~v~d~~~-~~~~~~iG~~~~~l~~l 108 (131)
T cd04026 84 IEVWDWDR-TTRNDFMGSLSFGVSEL 108 (131)
T ss_pred EEEEECCC-CCCcceeEEEEEeHHHh
Confidence 88888653 23445666666654443
No 158
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=30.73 E-value=3.7e+02 Score=23.57 Aligned_cols=80 Identities=14% Similarity=0.117 Sum_probs=43.5
Q ss_pred eccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccc-eeecccCceEEEEccCCcccCcEEEEEEeCCCcccc
Q 001080 211 VIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLV-RHYKQADCELVKIDIHCHIQGDVVLECISLDSDQER 289 (1162)
Q Consensus 211 ~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~-r~y~~~d~~~i~~~i~~~v~GDV~I~~~h~~~~~~~ 289 (1162)
++......+-|.+|++|+..+ ...+.|....... -.| +..+.|++.......+.|++|+.+.. ..
T Consensus 10 ~l~~~~~~~~~~~~v~v~~~~---------~~~~~T~~~~~~~~P~w----~~~~~~~~~~~~~~~l~i~v~~~~~~-~~ 75 (102)
T cd00030 10 NLPAKDLNGKSDPYVKVSLGG---------KQKFKTKVVKNTLNPVW----NETFEFPVLDPESDTLTVEVWDKDRF-SK 75 (102)
T ss_pred CCCCcCCCCCCCcEEEEEecc---------CceEecceeCCCCCCcc----cceEEEEccCCCCCEEEEEEEecCCC-CC
Confidence 343323345588999998764 1234443322111 112 12355555443466778888887642 23
Q ss_pred CceEEEEEeeccccc
Q 001080 290 EEMMFRVMFNTAFIR 304 (1162)
Q Consensus 290 ~~~mFr~~FnT~FI~ 304 (1162)
...+.++.+...-+.
T Consensus 76 ~~~ig~~~~~l~~l~ 90 (102)
T cd00030 76 DDFLGEVEIPLSELL 90 (102)
T ss_pred CceeEEEEEeHHHhh
Confidence 567777777766554
No 159
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=29.68 E-value=2.5e+02 Score=29.03 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=18.2
Q ss_pred eeEEEEEEeeccccCCCCcceeEEEEEecC
Q 001080 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQD 231 (1162)
Q Consensus 202 l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~ 231 (1162)
|+++=|.-++++. ..|.|.||++|+-..
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~ 29 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIY 29 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeC
Confidence 3444444555655 346799999998754
No 160
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=29.50 E-value=73 Score=34.24 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhCCC-----------cEEEEEe-cCCCCchHHHHHHHHHHHhcCC
Q 001080 101 ETVHHFLRSSESWLSLGHQ-----------NVLLMHC-ERGGWPVLAFMLAALLIYRKQF 148 (1162)
Q Consensus 101 ~~l~~~~~~i~~wL~~d~~-----------nVVvVHC-kaG~GR~tG~~ia~yLly~~~~ 148 (1162)
+.|..+|+.+..|+..+.. ..+.||. ..|.|| ||=+++.|++....+
T Consensus 88 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~H~~f~~IHPF~DGNGR-t~Rll~~l~L~~~g~ 146 (186)
T TIGR02613 88 SELAILLDDVRYWLQNGTFSPDEIAIRFHHRLVAIHPFPNGNGR-HARLATDLLLEQQGY 146 (186)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHheecCcCCCCcH-HHHHHHHHHHHHCCC
Confidence 6777888888888865321 4588998 569999 777777777765554
No 161
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=29.29 E-value=3.2e+02 Score=26.00 Aligned_cols=89 Identities=15% Similarity=0.117 Sum_probs=47.7
Q ss_pred EEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCC----cccCcEEEEE
Q 001080 206 CVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHC----HIQGDVVLEC 280 (1162)
Q Consensus 206 ~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~----~v~GDV~I~~ 280 (1162)
.|.-++++..+..+.|.||++||-.+. +.....+|.|....++.. .|. .|.|...- ...--+.|+|
T Consensus 6 ~i~a~~L~~~d~~~~~DPyv~v~~~~~----~~~~~~~~kT~vi~~t~nP~Wn-----~f~~~~~~l~~~~~~~~l~~~V 76 (110)
T cd04047 6 QFSGKKLDKKDFFGKSDPFLEISRQSE----DGTWVLVYRTEVIKNTLNPVWK-----PFTIPLQKLCNGDYDRPIKIEV 76 (110)
T ss_pred EEEeCCCCCCCCCCCCCeeEEEEEECC----CCCEEEEEeeeEeccCCCCceE-----EEEEEHHHhcCCCcCCEEEEEE
Confidence 445556666666677999999986531 001234565543222211 221 13333211 1133567788
Q ss_pred EeCCCccccCceEEEEEeeccccc
Q 001080 281 ISLDSDQEREEMMFRVMFNTAFIR 304 (1162)
Q Consensus 281 ~h~~~~~~~~~~mFr~~FnT~FI~ 304 (1162)
|+.+. .++...|.++.+.-.-|.
T Consensus 77 ~d~d~-~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 77 YDYDS-SGKHDLIGEFETTLDELL 99 (110)
T ss_pred EEeCC-CCCCcEEEEEEEEHHHHh
Confidence 88764 345567777777665554
No 162
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=28.62 E-value=3.9e+02 Score=25.61 Aligned_cols=70 Identities=11% Similarity=0.182 Sum_probs=36.6
Q ss_pred CcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCCcccCcEEEEEEeCCCccccCceEEEEE
Q 001080 219 GGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCHIQGDVVLECISLDSDQEREEMMFRVM 297 (1162)
Q Consensus 219 ~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~~v~GDV~I~~~h~~~~~~~~~~mFr~~ 297 (1162)
+.|.||++|+-.+ ..|.|....++.. .|. +.|.|.+.-.-...+.|++|+.+.. +...|.++.
T Consensus 26 g~~dPyv~v~~~~----------~~~kT~~~~~t~~P~W~----e~f~~~v~~~~~~~l~i~v~d~~~~--~~~~iG~~~ 89 (121)
T cd08391 26 GKSDPYVIVRVGA----------QTFKSKVIKENLNPKWN----EVYEAVVDEVPGQELEIELFDEDPD--KDDFLGRLS 89 (121)
T ss_pred CCcCCEEEEEECC----------EeEEccccCCCCCCccc----ceEEEEeCCCCCCEEEEEEEecCCC--CCCcEEEEE
Confidence 4589999998753 3455543222111 121 1244443222234666778877542 445666766
Q ss_pred eeccccc
Q 001080 298 FNTAFIR 304 (1162)
Q Consensus 298 FnT~FI~ 304 (1162)
|...-+.
T Consensus 90 i~l~~l~ 96 (121)
T cd08391 90 IDLGSVE 96 (121)
T ss_pred EEHHHhc
Confidence 6654443
No 163
>cd08620 PI-PLCXDc_like_1 Catalytic domain of uncharacterized hypothetical proteins similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins. This subfamily corresponds to the catalytic domain present in a group of uncharacterized hypothetical proteins found in bacteria and fungi, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidyl
Probab=28.14 E-value=55 Score=37.61 Aligned_cols=28 Identities=14% Similarity=0.366 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEecC
Q 001080 101 ETVHHFLRSSESWLSLGHQNVLLMHCER 128 (1162)
Q Consensus 101 ~~l~~~~~~i~~wL~~d~~nVVvVHCka 128 (1162)
..+.+++++|.+||.++++.||+|+++.
T Consensus 77 ~~l~~~L~~i~~FL~~~p~EvVil~~~~ 104 (281)
T cd08620 77 QGFDTFLQDVVTFLKANPTEIVVVHITW 104 (281)
T ss_pred CcHHHHHHHHHHHHHHCCCcEEEEEEEc
Confidence 4577899999999999999999999974
No 164
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=27.84 E-value=1.1e+02 Score=28.22 Aligned_cols=26 Identities=19% Similarity=0.255 Sum_probs=16.1
Q ss_pred CCcEEEEEecCCCCchHHHHHHHHHHHhc
Q 001080 118 HQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1162)
Q Consensus 118 ~~nVVvVHCkaG~GR~tG~~ia~yLly~~ 146 (1162)
.+..|+|||..|. | +..++.+|...|
T Consensus 55 ~~~~ivv~c~~g~-~--s~~a~~~l~~~G 80 (96)
T cd01444 55 RDRPVVVYCYHGN-S--SAQLAQALREAG 80 (96)
T ss_pred CCCCEEEEeCCCC-h--HHHHHHHHHHcC
Confidence 4567999998554 3 444555555444
No 165
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=27.84 E-value=4.3e+02 Score=23.40 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=41.1
Q ss_pred EEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEeccccccc-ceeecccCceEEEEccCCcccCcEEEEEEeCCC
Q 001080 207 VILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKL-VRHYKQADCELVKIDIHCHIQGDVVLECISLDS 285 (1162)
Q Consensus 207 IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~-~r~y~~~d~~~i~~~i~~~v~GDV~I~~~h~~~ 285 (1162)
+..+++......+.+++|++|+-.+.. ...+.|...... --.|. +.+.|.+...-...|.|++|+.+.
T Consensus 7 ~~~~~l~~~~~~~~~~~yv~v~~~~~~-------~~~~~T~~~~~~~~P~w~----e~~~~~~~~~~~~~l~i~v~~~~~ 75 (101)
T smart00239 7 ISARNLPKKDKKGKSDPYVKVSLDGDP-------KEKKKTKVVKNTLNPVWN----ETFEFEVPPPELAELEIEVYDKDR 75 (101)
T ss_pred EEeeCCCCCCCCCCCCceEEEEEeCCc-------cceEeeeEecCCCCCccc----ceEEEEecCcccCEEEEEEEecCC
Confidence 344455554443568999999876420 123333221111 11121 235555533337778888888764
Q ss_pred ccccCceEEEEEee
Q 001080 286 DQEREEMMFRVMFN 299 (1162)
Q Consensus 286 ~~~~~~~mFr~~Fn 299 (1162)
.. ....+.++.+.
T Consensus 76 ~~-~~~~~G~~~~~ 88 (101)
T smart00239 76 FG-RDDFIGQVTIP 88 (101)
T ss_pred cc-CCceeEEEEEE
Confidence 22 34556555554
No 166
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=27.75 E-value=1.1e+02 Score=28.75 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=14.4
Q ss_pred hCCCcEEEEEecCCCCchHHHHHHH
Q 001080 116 LGHQNVLLMHCERGGWPVLAFMLAA 140 (1162)
Q Consensus 116 ~d~~nVVvVHCkaG~GR~tG~~ia~ 140 (1162)
.+.+..|||+|..|. + ++.++++
T Consensus 64 ~~~~~~iv~yc~~~~-~-~~~~~~~ 86 (113)
T PF00581_consen 64 IDKDKDIVFYCSSGW-R-SGSAAAA 86 (113)
T ss_dssp STTTSEEEEEESSSC-H-HHHHHHH
T ss_pred ccccccceeeeeccc-c-cchhHHH
Confidence 356677899995444 5 5554444
No 167
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=27.38 E-value=3.4e+02 Score=32.57 Aligned_cols=10 Identities=10% Similarity=0.179 Sum_probs=4.7
Q ss_pred CChhHHHHHH
Q 001080 1061 IPLPDLMGSV 1070 (1162)
Q Consensus 1061 ~s~eeL~~aI 1070 (1162)
++.+|...+.
T Consensus 470 vtkDDaY~~F 479 (487)
T KOG4672|consen 470 VTKDDAYNAF 479 (487)
T ss_pred CcchHHHHHH
Confidence 3445554444
No 168
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=26.96 E-value=2.5e+02 Score=26.98 Aligned_cols=68 Identities=12% Similarity=0.153 Sum_probs=37.3
Q ss_pred CcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCCcccCcEEEEEEeCCCccccCceEEEEE
Q 001080 219 GGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCHIQGDVVLECISLDSDQEREEMMFRVM 297 (1162)
Q Consensus 219 ~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~~v~GDV~I~~~h~~~~~~~~~~mFr~~ 297 (1162)
|.+.||++|+-.+ +.++.|....++.. .|. +.+.|.+.-.-.-.+.|+|++.+.. ....|.++.
T Consensus 11 G~~dPYv~v~v~~---------~~~~kT~v~~~t~nP~Wn----e~f~f~v~~~~~~~l~i~v~d~~~~--~d~~iG~~~ 75 (111)
T cd04052 11 GLLSPYAELYLNG---------KLVYTTRVKKKTNNPSWN----ASTEFLVTDRRKSRVTVVVKDDRDR--HDPVLGSVS 75 (111)
T ss_pred CCCCceEEEEECC---------EEEEEEeeeccCCCCccC----CceEEEecCcCCCEEEEEEEECCCC--CCCeEEEEE
Confidence 5589999999753 24555543221111 121 2244433211223377888887643 567788888
Q ss_pred eecc
Q 001080 298 FNTA 301 (1162)
Q Consensus 298 FnT~ 301 (1162)
|.-.
T Consensus 76 v~L~ 79 (111)
T cd04052 76 ISLN 79 (111)
T ss_pred ecHH
Confidence 7744
No 169
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=26.83 E-value=87 Score=29.48 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=18.5
Q ss_pred HHHhCCCcEEEEEecCCCCchHHHHHHHHHHHhc
Q 001080 113 WLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1162)
Q Consensus 113 wL~~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~ 146 (1162)
|+..+.+..|||+|..|. | ++. +|..|...|
T Consensus 59 ~~~~~~~~~vv~~c~~g~-~-s~~-~a~~L~~~G 89 (105)
T cd01525 59 RLENYKGKIIVIVSHSHK-H-AAL-FAAFLVKCG 89 (105)
T ss_pred HHHhhcCCeEEEEeCCCc-c-HHH-HHHHHHHcC
Confidence 455555678999998765 4 433 344454444
No 170
>cd08587 PI-PLCXDc_like Catalytic domain of phosphatidylinositol-specific phospholipase C X domain containing and similar proteins. This family corresponds to the catalytic domain present in phosphatidylinositol-specific phospholipase C X domain containing proteins (PI-PLCXD) which are bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) sequence homologs mainly found in eukaryota. The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs and their bacterial homologs contain a single TIM-barrel type catalytic domain, X domain, which is more closely related to that of bacterial PI-PLCs. Although the biological function of eukaryotic PI-PLCXDs still remains unclear, it may be
Probab=25.89 E-value=54 Score=37.53 Aligned_cols=75 Identities=17% Similarity=0.144 Sum_probs=45.9
Q ss_pred hHHhhcChHHHHHHHHHhCCCCcEEEEecCCCCccccccccccccCcEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 001080 37 EEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSL 116 (1162)
Q Consensus 37 e~~YRn~i~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f~~~v~~~P~~d~~~P~p~L~~l~~~~~~i~~wL~~ 116 (1162)
....++.-..|..+|+ ++ .+.|.|+-..+.. ..-+..+.| |.- ....+.+++++|.+||.+
T Consensus 47 ~~~~~tQ~~~i~~QL~--~G---iR~fDlR~~~~~~------~~~~~~~~H------~~~--~~~~~~~~l~~i~~fl~~ 107 (288)
T cd08587 47 RKWSVTQSLSIYDQLE--AG---IRYFDLRVAYKPD------SENKLYFVH------GLY--SGEPVDEVLEDVNDFLDE 107 (288)
T ss_pred HHHhhccCcCHHHHHh--hC---ceEEEEEEeecCC------CCCeEEEEe------ecc--cccCHHHHHHHHHHHHHh
Confidence 5556677777888888 33 3444554432210 001122222 211 225567899999999999
Q ss_pred CCCcEEEEEecCCC
Q 001080 117 GHQNVLLMHCERGG 130 (1162)
Q Consensus 117 d~~nVVvVHCkaG~ 130 (1162)
+++.||+|+++.-.
T Consensus 108 ~p~Evvil~~~~~~ 121 (288)
T cd08587 108 HPKEVVILDFNHFY 121 (288)
T ss_pred CCCcEEEEEEEccc
Confidence 99999999997654
No 171
>cd08622 PI-PLCXDc_CG14945_like Catalytic domain of Drosophila melanogaster CG14945-like proteins similar to phosphatidylinositol-specific phospholipase C, X domain containing. This subfamily corresponds to the catalytic domain present in uncharacterized metazoan Drosophila melanogaster CG14945-like proteins, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI
Probab=25.68 E-value=59 Score=37.22 Aligned_cols=27 Identities=7% Similarity=0.231 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEecC
Q 001080 101 ETVHHFLRSSESWLSLGHQNVLLMHCER 128 (1162)
Q Consensus 101 ~~l~~~~~~i~~wL~~d~~nVVvVHCka 128 (1162)
..+.++++++.+||.++ +.||++.|+.
T Consensus 80 ~~l~~vL~~v~~Fl~~~-~EvVil~~~~ 106 (276)
T cd08622 80 VPLLTVLNDVRNFVQNT-GEIVVLDFHR 106 (276)
T ss_pred ccHHHHHHHHHHHHHHC-CCEEEEEEEc
Confidence 66888999999999999 9999998874
No 172
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=24.92 E-value=1.1e+02 Score=31.81 Aligned_cols=69 Identities=19% Similarity=0.173 Sum_probs=37.2
Q ss_pred HHHHHHHhhCCCHHHHHHHhhhcCCC---------CCchhHHHHHHHhhCCCchhhhhhhhHHHHhhHHHHHHHHHHHHH
Q 001080 1081 DQVDNLIKFCPTKEEMEVLKNYNGDK---------GNLGKCEQFFLELMKVPRVESKLRVFSFKIQFQTQVSDLRTSLNI 1151 (1162)
Q Consensus 1081 e~l~~Ll~~lPT~EEi~~Lk~y~gd~---------~~L~~aEqF~l~L~~Vpr~~~RL~~llFk~~F~~~i~eL~~~L~~ 1151 (1162)
.....|..+.|+-+|++.+...-+.. +.|.+++.......++.+|. +.-+..|...+++++.+|..
T Consensus 38 ~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~r~n-----~~kk~~y~~Ki~~le~~l~~ 112 (147)
T PF05659_consen 38 RLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVRRWN-----LYKKPRYARKIEELEESLRR 112 (147)
T ss_pred HHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhccccHHH-----HHhhHhHHHHHHHHHHHHHH
Confidence 34456667888888888887654332 12333333333333333321 12345566666666666655
Q ss_pred HHH
Q 001080 1152 INS 1154 (1162)
Q Consensus 1152 v~~ 1154 (1162)
+.+
T Consensus 113 f~~ 115 (147)
T PF05659_consen 113 FIQ 115 (147)
T ss_pred Hhc
Confidence 544
No 173
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=24.75 E-value=4e+02 Score=27.65 Aligned_cols=71 Identities=7% Similarity=-0.012 Sum_probs=39.5
Q ss_pred CcceeEEEEEecCCCcccCCCCcEEEecccccccceeecccCceEEEEccCCc-ccCcEEEEEEeCCCccccCceEEEEE
Q 001080 219 GGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVRHYKQADCELVKIDIHCH-IQGDVVLECISLDSDQEREEMMFRVM 297 (1162)
Q Consensus 219 ~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r~y~~~d~~~i~~~i~~~-v~GDV~I~~~h~~~~~~~~~~mFr~~ 297 (1162)
+.|.||++|.-.+.. ..++++..+. --.| ++.+.|.+.+. +...|.|++++.+. .++.+.|.++.
T Consensus 33 ~~~DPYV~V~~~g~~----~kT~v~~~t~-----nPvW----NE~f~f~v~~p~~~~~l~~~v~D~d~-~~~dd~iG~~~ 98 (151)
T cd04018 33 ELVDPYVEVSFAGQK----VKTSVKKNSY-----NPEW----NEQIVFPEMFPPLCERIKIQIRDWDR-VGNDDVIGTHF 98 (151)
T ss_pred CCcCcEEEEEECCEe----eecceEcCCC-----CCCc----ceEEEEEeeCCCcCCEEEEEEEECCC-CCCCCEEEEEE
Confidence 468999999865421 1122222110 0112 13466665433 45678888888764 33566788877
Q ss_pred eecccc
Q 001080 298 FNTAFI 303 (1162)
Q Consensus 298 FnT~FI 303 (1162)
|.-.=|
T Consensus 99 l~l~~l 104 (151)
T cd04018 99 IDLSKI 104 (151)
T ss_pred EeHHHh
Confidence 776643
No 174
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=24.55 E-value=86 Score=29.40 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=17.5
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHHHHHhc
Q 001080 117 GHQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1162)
Q Consensus 117 d~~nVVvVHCkaG~GR~tG~~ia~yLly~~ 146 (1162)
+.+..|+|||..|. | + ..++.+|...|
T Consensus 59 ~~~~~ivv~C~~G~-r-s-~~aa~~L~~~G 85 (100)
T cd01523 59 PDDQEVTVICAKEG-S-S-QFVAELLAERG 85 (100)
T ss_pred CCCCeEEEEcCCCC-c-H-HHHHHHHHHcC
Confidence 45678999998775 5 3 44555555444
No 175
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=24.24 E-value=1.6e+02 Score=35.23 Aligned_cols=85 Identities=11% Similarity=0.038 Sum_probs=42.2
Q ss_pred hcChHHHHHHHHHhCCCCcEEEEecCCCCccccccccccccCcEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCc
Q 001080 41 KEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQN 120 (1162)
Q Consensus 41 Rn~i~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f~~~v~~~P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~n 120 (1162)
|-...++.++|++ + ...|+..++...+. + -|.+- ..++-..+++.|.+....+..+.. .+++
T Consensus 272 ~~~~~el~~~l~~---~-~~~lIDVR~~~E~~-------~-----ghI~~-~~gAinIPl~~l~~~~~~~~~l~~-~~~~ 333 (370)
T PRK05600 272 RTDTTSLIDATLN---G-SATLLDVREPHEVL-------L-----KDLPE-GGASLKLPLSAITDDADILHALSP-IDGD 333 (370)
T ss_pred ccCHHHHHHHHhc---C-CeEEEECCCHHHhh-------h-----ccCCC-CCccEeCcHHHhhcchhhhhhccc-cCCC
Confidence 4445666666654 2 25677888874321 1 11210 001111246666433222333322 2334
Q ss_pred EEEEEecCCCCchHHHHHHHHHHHhc
Q 001080 121 VLLMHCERGGWPVLAFMLAALLIYRK 146 (1162)
Q Consensus 121 VVvVHCkaG~GR~tG~~ia~yLly~~ 146 (1162)
-|+|||..|. | +. .++.+|...|
T Consensus 334 ~Ivv~C~sG~-R-S~-~Aa~~L~~~G 356 (370)
T PRK05600 334 NVVVYCASGI-R-SA-DFIEKYSHLG 356 (370)
T ss_pred cEEEECCCCh-h-HH-HHHHHHHHcC
Confidence 7999999886 5 44 4556665444
No 176
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=24.09 E-value=92 Score=29.31 Aligned_cols=28 Identities=21% Similarity=0.231 Sum_probs=20.2
Q ss_pred hCCCcEEEEEecCCCCchHHHHHHHHHHHhc
Q 001080 116 LGHQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1162)
Q Consensus 116 ~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~ 146 (1162)
.+.+..++|+|..|. | + ..++.+|...|
T Consensus 58 ~~~~~~ivv~C~~G~-r-S-~~aa~~L~~~G 85 (110)
T COG0607 58 LPDDDPIVVYCASGV-R-S-AAAAAALKLAG 85 (110)
T ss_pred cCCCCeEEEEeCCCC-C-h-HHHHHHHHHcC
Confidence 455688999999876 5 4 45677777666
No 177
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=23.42 E-value=5.7e+02 Score=25.99 Aligned_cols=83 Identities=11% Similarity=-0.024 Sum_probs=48.5
Q ss_pred eeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccceeecccCceEEEEccCCcccCcEEEEEE
Q 001080 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVRHYKQADCELVKIDIHCHIQGDVVLECI 281 (1162)
Q Consensus 202 l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r~y~~~d~~~i~~~i~~~v~GDV~I~~~ 281 (1162)
|+++=|.-+.++ ..++|.||++|.-++. -+.|......--.| ++.|.|.+.- .++.+.|+++
T Consensus 4 L~V~Vv~Ar~L~---~~~~~dPYV~Ik~g~~----------k~kT~v~~~~nP~W----nE~F~F~~~~-~~~~L~v~V~ 65 (127)
T cd08394 4 LCVLVKKAKLDG---APDKFNTYVTLKVQNV----------KSTTIAVRGSQPCW----EQDFMFEINR-LDLGLVIELW 65 (127)
T ss_pred EEEEEEEeeCCC---CCCCCCCeEEEEECCE----------EeEeeECCCCCCce----eeEEEEEEcC-CCCEEEEEEE
Confidence 333334444443 3467889999976531 12222211111122 1346676532 5566999999
Q ss_pred eCCCccccCceEEEEEeeccccc
Q 001080 282 SLDSDQEREEMMFRVMFNTAFIR 304 (1162)
Q Consensus 282 h~~~~~~~~~~mFr~~FnT~FI~ 304 (1162)
+++. ..++.|.+++|...=|.
T Consensus 66 dkd~--~~DD~lG~v~i~L~~v~ 86 (127)
T cd08394 66 NKGL--IWDTLVGTVWIPLSTIR 86 (127)
T ss_pred eCCC--cCCCceEEEEEEhHHcc
Confidence 9773 36788999999887665
No 178
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=23.29 E-value=8.2e+02 Score=25.33 Aligned_cols=70 Identities=10% Similarity=-0.065 Sum_probs=36.1
Q ss_pred CcceeEEEEEecCCCcccCCCCcEEEecccccccc-eeecccCceEEEEccCCcccCcEEEEEEeCCCccccCceEEEEE
Q 001080 219 GGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLV-RHYKQADCELVKIDIHCHIQGDVVLECISLDSDQEREEMMFRVM 297 (1162)
Q Consensus 219 ~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~-r~y~~~d~~~i~~~i~~~v~GDV~I~~~h~~~~~~~~~~mFr~~ 297 (1162)
|.+.||++|+-.+. .++.|....++. -.| ++.|.|.+.- ...+|.|.+++.+. . ..+.|.++.
T Consensus 56 g~sDPYv~V~l~~~---------~~~rT~v~~~~~nP~W----nE~F~~~~~~-~~~~l~~~V~d~d~-~-~~~~IG~~~ 119 (158)
T cd04015 56 ITSDPYATVDLAGA---------RVARTRVIENSENPVW----NESFHIYCAH-YASHVEFTVKDNDV-V-GAQLIGRAY 119 (158)
T ss_pred CCcCeEEEEEECCe---------EeeEEEEeCCCCCCcc----ceEEEEEccC-CCCEEEEEEEeCCC-c-CCcEEEEEE
Confidence 45789999986531 233333211111 122 1235454421 22367888887653 2 235777777
Q ss_pred eeccccc
Q 001080 298 FNTAFIR 304 (1162)
Q Consensus 298 FnT~FI~ 304 (1162)
+...=|.
T Consensus 120 i~l~~l~ 126 (158)
T cd04015 120 IPVEDLL 126 (158)
T ss_pred EEhHHcc
Confidence 7655443
No 179
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=23.18 E-value=1.2e+02 Score=39.23 Aligned_cols=56 Identities=16% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEecCCCC-------chHHHHHHHHHHHhcCCCCHH--HHHHHHHH
Q 001080 100 METVHHFLRSSESWLSLGHQNVLLMHCERGGW-------PVLAFMLAALLIYRKQFTGEQ--KTLDMIYK 160 (1162)
Q Consensus 100 L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~G-------R~tG~~ia~yLly~~~~~~~~--eAL~~~~~ 160 (1162)
|+-.++|-...+.|+.. |-|||-.|+- +-+|-.+|||++-+..-+..+ +|+.||.|
T Consensus 928 mdaAl~~Y~~A~D~fs~-----VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 928 MDAALSFYSSAKDYFSM-----VRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred hHHHHHHHHHhhhhhhh-----eeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
No 180
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=23.16 E-value=1.5e+02 Score=26.81 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=18.4
Q ss_pred HHHhCCCcEEEEEecCCCCchHHHHHHHHHHHhc
Q 001080 113 WLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1162)
Q Consensus 113 wL~~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~ 146 (1162)
.+..+.+..|+|+|.. +.| +..++.+|...|
T Consensus 50 ~~~~~~~~~iv~~c~~-g~~--a~~~~~~l~~~G 80 (100)
T smart00450 50 RLGLDKDKPVVVYCRS-GNR--SAKAAWLLRELG 80 (100)
T ss_pred HcCCCCCCeEEEEeCC-CcH--HHHHHHHHHHcC
Confidence 3445677899999944 334 444555555443
No 181
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]
Probab=23.13 E-value=1e+02 Score=37.90 Aligned_cols=78 Identities=13% Similarity=0.168 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEEecC--CCCchHHHHHHHHHHHhc----CCCCHHHHHHHHHHhCchhhhccCCC
Q 001080 99 TMETVHHFLRSSESWLSLGHQNVLLMHCER--GGWPVLAFMLAALLIYRK----QFTGEQKTLDMIYKQAPRELLQLMSP 172 (1162)
Q Consensus 99 ~L~~l~~~~~~i~~wL~~d~~nVVvVHCka--G~GR~tG~~ia~yLly~~----~~~~~~eAL~~~~~~~~~~~~~~~s~ 172 (1162)
+|..|.+.++.+..= +|.+..-+||-.| |||- |...+.+.|...+ .|++.+ |-.+ |.|-+ ++|
T Consensus 52 ~l~~m~~~L~~lg~p--~d~~~l~iIHVAGTkGKGS-tcaF~~SILr~~g~rtG~yTSPH--Ll~v-rErIr--iNG--- 120 (496)
T KOG2525|consen 52 TLPRMRKLLERLGNP--EDQNSLNIIHVAGTKGKGS-TCAFTESILRQQGLRTGFYTSPH--LLSV-RERIR--ING--- 120 (496)
T ss_pred CHHHHHHHHHHhCCh--hhhhheeEEEEecCCCCcc-hHHHHHHHHHhcccccccccChh--hcch-hheEE--ECC---
Confidence 688888888877653 4556666777765 6777 6666666665333 355543 2222 22211 122
Q ss_pred CCCChHHHHHHHHHHHh
Q 001080 173 LNPLPSQLRYLQYVSRR 189 (1162)
Q Consensus 173 ~~~~PSQ~RYv~Yf~~l 189 (1162)
..=|+.+|.+||-++
T Consensus 121 --qpIS~e~F~~~f~~v 135 (496)
T KOG2525|consen 121 --QPISEEKFTKYFWEV 135 (496)
T ss_pred --EECCHHHHHHHHHHH
Confidence 244899999999754
No 182
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=23.09 E-value=5.4e+02 Score=24.98 Aligned_cols=95 Identities=14% Similarity=0.110 Sum_probs=49.7
Q ss_pred CCceeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccc-eeecccCceEEEEc-cCC-cccC-
Q 001080 199 DRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLV-RHYKQADCELVKID-IHC-HIQG- 274 (1162)
Q Consensus 199 ~~~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~-r~y~~~d~~~i~~~-i~~-~v~G- 274 (1162)
...|.++=+.-++++..+..+.|.||++|+-... ......+.|.....+. -.|. ..+.|. +.. .+..
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-----~~~~~~~rT~v~~~~~~P~Wn----e~f~f~~~~~~~~~~~ 84 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPG-----ASKATKLRTKTVHKTRNPEFN----ETLTYYGITEEDIQRK 84 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecC-----CCCCCceeeeeecCCCCCCcc----ceEEEcCCCHHHhCCC
Confidence 3456666677778888777678999999986321 0011123332211111 1121 224443 211 1222
Q ss_pred cEEEEEEeCCCccccCceEEEEEeeccccc
Q 001080 275 DVVLECISLDSDQEREEMMFRVMFNTAFIR 304 (1162)
Q Consensus 275 DV~I~~~h~~~~~~~~~~mFr~~FnT~FI~ 304 (1162)
-+.|++|+.+.. .++.|.++.|..+=+.
T Consensus 85 ~l~~~v~d~~~~--~~~~iG~~~i~l~~l~ 112 (123)
T cd04035 85 TLRLLVLDEDRF--GNDFLGETRIPLKKLK 112 (123)
T ss_pred EEEEEEEEcCCc--CCeeEEEEEEEcccCC
Confidence 356678877543 4567777777665444
No 183
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=22.81 E-value=4.8e+02 Score=27.18 Aligned_cols=30 Identities=13% Similarity=-0.005 Sum_probs=20.8
Q ss_pred ceeEEEEEEeeccccCCCCcceeEEEEEec
Q 001080 201 ALTLDCVILRVIPNFDGEGGCCPIFRIYGQ 230 (1162)
Q Consensus 201 ~l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~ 230 (1162)
.|.++=|.-+++...+..|.|.||++|+-.
T Consensus 29 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~ 58 (153)
T cd08676 29 VLKVTVIEAKGLLAKDVNGFSDPYCMLGIV 58 (153)
T ss_pred EEEEEEEeccCCcccCCCCCCCceEEEEEc
Confidence 344444455567777767789999999864
No 184
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=22.60 E-value=2e+02 Score=34.68 Aligned_cols=60 Identities=17% Similarity=0.224 Sum_probs=36.7
Q ss_pred EEecCCCCccccccccccccCcEEe--eCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEecCCC
Q 001080 62 VFNFREGEHQSQIGQVLSEYDMTVM--DYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGG 130 (1162)
Q Consensus 62 V~NL~~~~~~~~~~~~~s~f~~~v~--~~P~~d~~~P~p~L~~l~~~~~~i~~wL~~d~~nVVvVHCkaG~ 130 (1162)
|.++....|-.++.++...|+..|. +..|. .+ .+++.+.++|+ -..+-+.|++|||+---
T Consensus 83 VLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg---~~-v~p~~v~~~L~-----~~~~~~~V~~vH~ETST 144 (383)
T COG0075 83 VLVVVNGKFGERFAEIAERYGAEVVVLEVEWG---EA-VDPEEVEEALD-----KDPDIKAVAVVHNETST 144 (383)
T ss_pred EEEEeCChHHHHHHHHHHHhCCceEEEeCCCC---CC-CCHHHHHHHHh-----cCCCccEEEEEeccCcc
Confidence 4444444455667777777876654 44443 33 37777777665 11245689999998543
No 185
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=22.54 E-value=1.2e+02 Score=31.79 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=17.7
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHHHHHhc
Q 001080 117 GHQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1162)
Q Consensus 117 d~~nVVvVHCkaG~GR~tG~~ia~yLly~~ 146 (1162)
+.+.-|||.|..|.+| +..++.+|...|
T Consensus 114 ~~d~~IVvYC~~G~~~--S~~aa~~L~~~G 141 (162)
T TIGR03865 114 DKDRPLVFYCLADCWM--SWNAAKRALAYG 141 (162)
T ss_pred CCCCEEEEEECCCCHH--HHHHHHHHHhcC
Confidence 5678899999876644 333444444444
No 186
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=22.42 E-value=4.7e+02 Score=28.31 Aligned_cols=73 Identities=12% Similarity=0.085 Sum_probs=43.2
Q ss_pred cCCCCCCcchHHhhcChHHHHHHHHHhCCCCcEEEEecCCCCcccccccccccc-CcEEeeCCCCCCCCCCCCHHHHHHH
Q 001080 28 CCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEY-DMTVMDYPRHYEGCPLLTMETVHHF 106 (1162)
Q Consensus 28 ~~fP~~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f-~~~v~~~P~~d~~~P~p~L~~l~~~ 106 (1162)
.|.|+. .+-|--..+++..+|.++ +++|.||+.+...... ...| +.++++.+....| .++.|..-
T Consensus 10 rGIPa~---YGGfET~ve~L~~~l~~~--g~~v~Vyc~~~~~~~~-----~~~y~gv~l~~i~~~~~g----~~~si~yd 75 (185)
T PF09314_consen 10 RGIPAR---YGGFETFVEELAPRLVSK--GIDVTVYCRSDYYPYK-----EFEYNGVRLVYIPAPKNG----SAESIIYD 75 (185)
T ss_pred CCCCcc---cCcHHHHHHHHHHHHhcC--CceEEEEEccCCCCCC-----CcccCCeEEEEeCCCCCC----chHHHHHH
Confidence 367764 455666678888888765 3469999998764221 2234 4466666644433 25565554
Q ss_pred HHHHHHHH
Q 001080 107 LRSSESWL 114 (1162)
Q Consensus 107 ~~~i~~wL 114 (1162)
+.++..-|
T Consensus 76 ~~sl~~al 83 (185)
T PF09314_consen 76 FLSLLHAL 83 (185)
T ss_pred HHHHHHHH
Confidence 44444444
No 187
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=22.37 E-value=5.9e+02 Score=24.73 Aligned_cols=30 Identities=17% Similarity=0.076 Sum_probs=20.1
Q ss_pred eeEEEEEEeeccccCCCCcceeEEEEEecC
Q 001080 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQD 231 (1162)
Q Consensus 202 l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~ 231 (1162)
|.+.=+.-++++..+..+.|.||++|+..+
T Consensus 3 L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~ 32 (124)
T cd04049 3 LEVLLISAKGLQDTDFLGKIDPYVIIQCRT 32 (124)
T ss_pred EEEEEEecCCCCCCCCCCCcCceEEEEECC
Confidence 444444455666666566799999998653
No 188
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=22.13 E-value=5.6e+02 Score=26.48 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=21.7
Q ss_pred CceeEEEEEEeeccccC-CCCcceeEEEEEec
Q 001080 200 RALTLDCVILRVIPNFD-GEGGCCPIFRIYGQ 230 (1162)
Q Consensus 200 ~~l~L~~IiL~~iP~f~-~~~gcrP~~~Iy~~ 230 (1162)
..|.+.=|.-++++..+ ..+.|-||++||-.
T Consensus 29 ~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Ll 60 (146)
T cd04028 29 GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLL 60 (146)
T ss_pred CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEE
Confidence 34666666777777654 34568999999975
No 189
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=22.07 E-value=1.7e+02 Score=28.15 Aligned_cols=32 Identities=9% Similarity=0.172 Sum_probs=18.9
Q ss_pred HHHHhCCCcEEEEEecCCCCchHHHHHHHHHHHhc
Q 001080 112 SWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1162)
Q Consensus 112 ~wL~~d~~nVVvVHCkaG~GR~tG~~ia~yLly~~ 146 (1162)
.|+..+.+..|+|+|..|. | +.. ++.+|...|
T Consensus 51 ~~~~~~~~~~vvlyC~~G~-r-S~~-aa~~L~~~G 82 (101)
T TIGR02981 51 ATAVPDKNDTVKLYCNAGR-Q-SGM-AKDILLDMG 82 (101)
T ss_pred HHhCCCCCCeEEEEeCCCH-H-HHH-HHHHHHHcC
Confidence 3444456678999998764 5 443 444554443
No 190
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=22.03 E-value=95 Score=29.23 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=16.8
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHHHHHhc
Q 001080 117 GHQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1162)
Q Consensus 117 d~~nVVvVHCkaG~GR~tG~~ia~yLly~~ 146 (1162)
+.+..|||+|..|. | +..++.+|...|
T Consensus 64 ~~~~~ivv~c~~g~-~--s~~~~~~l~~~G 90 (106)
T cd01519 64 SKDKELIFYCKAGV-R--SKAAAELARSLG 90 (106)
T ss_pred CCCCeEEEECCCcH-H--HHHHHHHHHHcC
Confidence 45668999998654 4 344555555444
No 191
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=21.86 E-value=2.1e+02 Score=33.34 Aligned_cols=49 Identities=16% Similarity=0.273 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCC--------------CcEEEEEe-cCCCCchHHHHHHHHHHHhc
Q 001080 98 LTMETVHHFLRSSESWLSLGH--------------QNVLLMHC-ERGGWPVLAFMLAALLIYRK 146 (1162)
Q Consensus 98 p~L~~l~~~~~~i~~wL~~d~--------------~nVVvVHC-kaG~GR~tG~~ia~yLly~~ 146 (1162)
+.-+.+..-++++.+||.... -..|.||- ..|.||++-++..-+|+..|
T Consensus 332 p~P~dv~~qmq~fv~WLNsE~~~tlhPve~AAlAHYKLV~iHPF~DGNGRTsRLLmNlilMraG 395 (472)
T KOG3824|consen 332 PSPEDVMEQMQDFVDWLNSESTLTLHPVERAALAHYKLVLIHPFTDGNGRTSRLLMNLILMRAG 395 (472)
T ss_pred CChHHHHHHHHHHHHHhccccccccChHHHHHHhhheeEEEeccccCCchHHHHHHHHHHHhcC
Confidence 466777777788888997632 25678884 57999966666666666555
No 192
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=21.84 E-value=81 Score=35.22 Aligned_cols=77 Identities=16% Similarity=0.073 Sum_probs=47.9
Q ss_pred HHhhcChHHHHHHHHHhCCCCcEEEEecCCCCccccccccccccCcEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC
Q 001080 38 EEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLG 117 (1162)
Q Consensus 38 ~~YRn~i~~V~~~L~~~h~~~~y~V~NL~~~~~~~~~~~~~s~f~~~v~~~P~~d~~~P~p~L~~l~~~~~~i~~wL~~d 117 (1162)
..+++.-..|..+|+. + .+.+.|+-..... +-++.+.|-.+... -..+.++++++.+||.++
T Consensus 34 ~~~~~Q~~~i~~QL~~--G---iR~~dlr~~~~~~-------~~~~~~~H~~~~~~------~~~~~~vL~~i~~fl~~~ 95 (271)
T cd08557 34 KWSKTQDLSITDQLDA--G---VRYLDLRVAYDPD-------DGDLYVCHGLFLLN------GQTLEDVLNEVKDFLDAH 95 (271)
T ss_pred hHHhccCCCHHHHHhc--C---ceEEEEEeeeecC-------CCcEEEEccccccC------cccHHHHHHHHHHHHHHC
Confidence 5667777888888883 2 4455554332110 11223333211110 145678899999999999
Q ss_pred CCcEEEEEecCCCCc
Q 001080 118 HQNVLLMHCERGGWP 132 (1162)
Q Consensus 118 ~~nVVvVHCkaG~GR 132 (1162)
++.||+|+++...+.
T Consensus 96 p~E~vil~~~~~~~~ 110 (271)
T cd08557 96 PSEVVILDLEHEYGG 110 (271)
T ss_pred CCcEEEEEEEccCCC
Confidence 999999999976544
No 193
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=21.84 E-value=9.3e+02 Score=25.19 Aligned_cols=96 Identities=11% Similarity=0.019 Sum_probs=51.1
Q ss_pred eeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEecccccccce-eecccCceEEEEccCCc--------c
Q 001080 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCH--------I 272 (1162)
Q Consensus 202 l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~~~~r-~y~~~d~~~i~~~i~~~--------v 272 (1162)
|++..++=..+|.....+-+-||+++|-.-+ ......+.|.....++. .|. +.|.|+++-. =
T Consensus 6 l~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p-----~~~~~k~KT~v~k~TlnPvfN----E~f~f~I~~~~~~~~R~l~ 76 (155)
T cd08690 6 LTIVRCIGIPLPSGWNPKDLDTYVKFEFPYP-----NEEPQSGKTSTIKDTNSPEYN----ESFKLNINRKHRSFQRVFK 76 (155)
T ss_pred EEEEEeeccccCCCcCCCCCCeEEEEEEecC-----CCCCceeecCcccCCCCCccc----ceEEEEeccccchhhhhcc
Confidence 3343333333566665566899999974111 11122333433222222 332 2355555321 1
Q ss_pred cCcEEEEEEeCCCccccCceEEEEEeecccccCC
Q 001080 273 QGDVVLECISLDSDQEREEMMFRVMFNTAFIRSN 306 (1162)
Q Consensus 273 ~GDV~I~~~h~~~~~~~~~~mFr~~FnT~FI~~n 306 (1162)
...+.|++|+.+.-+.+...|.++.+.-.=+..+
T Consensus 77 ~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~ 110 (155)
T cd08690 77 RHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETK 110 (155)
T ss_pred CCcEEEEEEeCCCcccCCCeeEEEEEEccccccc
Confidence 4568899999875333567888888877666543
No 194
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=21.82 E-value=1.2e+02 Score=38.13 Aligned_cols=37 Identities=8% Similarity=0.177 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHhhcc-CCCCCCCchhHHhhhhccccc
Q 001080 357 GLPIEAFAKVQEIFSN-VDWLDPKLDVAVNMLQHFTPS 393 (1162)
Q Consensus 357 ~l~~e~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~ 393 (1162)
.+..+.|..+++=|+. .+|..+..+......++...+
T Consensus 508 ~~~l~~W~~~y~r~d~~~~~~~~~~~~~~~~~~~~~~l 545 (573)
T KOG1089|consen 508 TLSLQVWSSLYERWDEGLSPRTPSTETIQLLMEREKEL 545 (573)
T ss_pred cchhHHHHHHHHhhccCCCccccccchhHHHHHHHHHH
Confidence 3446778877776665 478888888888877765553
No 195
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=21.77 E-value=5.3e+02 Score=31.09 Aligned_cols=7 Identities=14% Similarity=0.425 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 001080 362 AFAKVQE 368 (1162)
Q Consensus 362 ~~~~~~~ 368 (1162)
.|.+|.+
T Consensus 89 tfer~~r 95 (487)
T KOG4672|consen 89 TFERGKR 95 (487)
T ss_pred HHHHHHH
Confidence 3333333
No 196
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=21.61 E-value=1.4e+02 Score=29.25 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=17.7
Q ss_pred CCCcEEEEEecCCCCchHHHHHHHHHHHhc
Q 001080 117 GHQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1162)
Q Consensus 117 d~~nVVvVHCkaG~GR~tG~~ia~yLly~~ 146 (1162)
+.+..|+|+|..|. | +.+++.+|...|
T Consensus 62 ~~~~~ivv~C~~G~-r--s~~aa~~L~~~G 88 (117)
T cd01522 62 GKDRPVLLLCRSGN-R--SIAAAEAAAQAG 88 (117)
T ss_pred CCCCeEEEEcCCCc-c--HHHHHHHHHHCC
Confidence 45677999998764 5 344566666554
No 197
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=21.59 E-value=5.1e+02 Score=25.55 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=19.6
Q ss_pred eeEEEEEEeeccccCCCCcceeEEEEEec
Q 001080 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQ 230 (1162)
Q Consensus 202 l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~ 230 (1162)
|.++=|.-++++..+..+.|.||++|+..
T Consensus 3 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~ 31 (127)
T cd04027 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVG 31 (127)
T ss_pred EEEEEEECcCCcCCCCCCCcCcEEEEEEC
Confidence 33444444566766666779999999974
No 198
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=20.66 E-value=2.3e+02 Score=30.72 Aligned_cols=98 Identities=19% Similarity=0.283 Sum_probs=53.8
Q ss_pred hhHHHHHHHhcCCCCCCHHHH-HHHHhhCCCHHHHHHHhhhcC--------CCCCchhHHHHHHHh-hCCCchhhhhhhh
Q 001080 1063 LPDLMGSVLALDDSALDIDQV-DNLIKFCPTKEEMEVLKNYNG--------DKGNLGKCEQFFLEL-MKVPRVESKLRVF 1132 (1162)
Q Consensus 1063 ~eeL~~aIl~lD~~~L~~e~l-~~Ll~~lPT~EEi~~Lk~y~g--------d~~~L~~aEqF~l~L-~~Vpr~~~RL~~l 1132 (1162)
++.+.+.+..|+..++++..+ ..|.+++-.+++...+.+... ....+.+.|.=+.+| .+|-.++.....+
T Consensus 71 f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~ 150 (190)
T PF05266_consen 71 FESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKL 150 (190)
T ss_pred HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777777544 233334433444333333211 112334444444444 2444555443333
Q ss_pred H-HHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 001080 1133 S-FKIQFQTQVSDLRTSLNIINSASEEAS 1160 (1162)
Q Consensus 1133 l-Fk~~F~~~i~eL~~~L~~v~~Ac~elR 1160 (1162)
. -+...+..+..++...+.+.++|+.++
T Consensus 151 ~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 151 KEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 355677788888888888888888765
No 199
>PF01371 Trp_repressor: Trp repressor protein; InterPro: IPR000831 The Trp repressor (TrpR) binds to at least five operators in the Escherichia coli genome, repressing gene expression. The operators at which it binds vary considerably in DNA sequence and location within the promoter; when bound to the Trp operon it recognises the sequence 5'-ACTAGT-3' and acts to prevent the initiation of transcription. The TrpR controls the trpEDCBA (trpO) operon and the genes for trpR, aroH, mtr and aroL, which are involved in the biosynthesis and uptake of the amino acid tryptophan []. The repressor binds to the operators only in the presence of L-tryptophan, thereby controlling the intracellular level of its effector; the complex also regulates Trp repressor biosynthesis by binding to its own regulatory region. TrpR acts as a dimer that is composed of identical 6-helical subunits, where four of the helices form the core of the protein and intertwine with the corresponding helices from the other subunit.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3FRW_H 3KOR_A 3SSW_N 1P6Z_N 1CO0_B 1JHG_A 1WRT_S 1WRS_R 1WRP_R 1RCS_B ....
Probab=20.65 E-value=61 Score=30.73 Aligned_cols=37 Identities=11% Similarity=0.210 Sum_probs=26.5
Q ss_pred hhhhhhhhH-H---HHhhHHHHHHHHHHHHHHHHHHHHHhc
Q 001080 1125 VESKLRVFS-F---KIQFQTQVSDLRTSLNIINSASEEASF 1161 (1162)
Q Consensus 1125 ~~~RL~~ll-F---k~~F~~~i~eL~~~L~~v~~Ac~elRn 1161 (1162)
+.+|+++.. . ...+.+..+++.-++.+|.+..+.|++
T Consensus 35 l~~R~~va~~lL~~g~syreIa~~tgvS~aTItRvsr~Lk~ 75 (87)
T PF01371_consen 35 LAQRWQVAKELLDEGKSYREIAEETGVSIATITRVSRCLKY 75 (87)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 445666554 2 246777778888888899998888874
No 200
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=20.43 E-value=2.3e+02 Score=28.05 Aligned_cols=17 Identities=41% Similarity=0.743 Sum_probs=12.2
Q ss_pred hCCCcEEEEEecCCCCc
Q 001080 116 LGHQNVLLMHCERGGWP 132 (1162)
Q Consensus 116 ~d~~nVVvVHCkaG~GR 132 (1162)
.+.+.-|+|.|..|+.|
T Consensus 83 i~~~~~vvvyC~~~G~r 99 (128)
T cd01520 83 LERDPKLLIYCARGGMR 99 (128)
T ss_pred cCCCCeEEEEeCCCCcc
Confidence 45667899999755545
No 201
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=20.34 E-value=5.3e+02 Score=25.08 Aligned_cols=89 Identities=10% Similarity=0.038 Sum_probs=47.4
Q ss_pred eeEEEEEEeeccccCCCCcceeEEEEEecCCCcccCCCCcEEEeccccc-cc-ceeecccCceEEEEccCCc-c---cCc
Q 001080 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRS-KL-VRHYKQADCELVKIDIHCH-I---QGD 275 (1162)
Q Consensus 202 l~L~~IiL~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~lyss~~~~-~~-~r~y~~~d~~~i~~~i~~~-v---~GD 275 (1162)
|.+.=+.-++++..+..+.|.||++|+-... ..+.|.... .. --.|. +.|.|.+.-. + ..-
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~---------~~~~T~~~~~~~~~P~Wn----e~f~f~v~~~~~~~~~~~ 68 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPS---------HKQSTPVDRDGGTNPTWN----ETLRFPLDERLLQQGRLA 68 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECCC---------cccccccccCCCCCCCCC----CEEEEEcChHhcccCccE
Confidence 3344444456676665577999999987531 112222110 00 11221 2355655322 1 445
Q ss_pred EEEEEEeCCCccccCceEEEEEeeccccc
Q 001080 276 VVLECISLDSDQEREEMMFRVMFNTAFIR 304 (1162)
Q Consensus 276 V~I~~~h~~~~~~~~~~mFr~~FnT~FI~ 304 (1162)
|.|++|+.+. ......|.++.|...-+.
T Consensus 69 l~~~v~d~~~-~~~~~~lG~~~i~l~~l~ 96 (125)
T cd04051 69 LTIEVYCERP-SLGDKLIGEVRVPLKDLL 96 (125)
T ss_pred EEEEEEECCC-CCCCCcEEEEEEEHHHhh
Confidence 7778888754 234557777777766655
Done!