BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001081
(1162 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 194 bits (492), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 126/333 (37%), Positives = 184/333 (55%), Gaps = 21/333 (6%)
Query: 115 GNIKVFCRTRPLFED--EGPSVVEFTDDCTIRVNTGDDTI-----SNPKKDFEFDRVYGP 167
GNI+V R RP+ ++ EGP E T+ T + DD+I FE D+V+ P
Sbjct: 4 GNIRVIARVRPVTKEDGEGP---EATNAVTFDAD--DDSIIHLLHKGKPVSFELDKVFSP 58
Query: 168 HVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDL 227
Q ++F +VQ V S +DG+NV IFAYGQT +GKT+TMEG++ + G+ R + LF
Sbjct: 59 QASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFS- 117
Query: 228 SNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESS----IELVQEKVD 283
+ + + V+ E+YNE LR+LL + +IRL S L + +V
Sbjct: 118 EVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQ 177
Query: 284 NPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYNNLITGENLYSKLSLVDLAG 339
+ + +KV + +R + + N SH ++++ + + TG KL+LVDLAG
Sbjct: 178 SVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAG 237
Query: 340 SEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESS 399
SE + G R+ + H+ KSLSALGDV+++L SR+ VP+ NS LT +L DSL S
Sbjct: 238 SERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDS 297
Query: 400 KTLMIVNICPNAANMSETLSSLNFSSRARSTVL 432
KTLM+V + P N SETL SL F+ R RS L
Sbjct: 298 KTLMVVQVSPVEKNTSETLYSLKFAERVRSVEL 330
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 189 bits (481), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 192/346 (55%), Gaps = 28/346 (8%)
Query: 102 RYLGVLADKTRKLGNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDDTISNPKK 157
RY + D G I+V+CR RPL E E ++ D+ T+ DD +K
Sbjct: 3 RYYNTIEDMK---GKIRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDD----KRK 55
Query: 158 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLY 217
+DRV+ Q ++F D + VQSA+DGYNV IFAYGQT SGKT T+ G + GL
Sbjct: 56 QHIYDRVFDMRASQDDIFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLT 115
Query: 218 ARCFEELFDLSNSDTTATARFNFAVTVF--ELYNEQLRELL-PQTGNGLAKIRLQSLESS 274
R +ELF++ D+ RF+F++ + ELY + L +LL P++ L K+ ++
Sbjct: 116 PRATKELFNILKRDS---KRFSFSLKAYMVELYQDTLVDLLLPKSARRL-KLEIKKDSKG 171
Query: 275 IELVQEKVDNPLEFSKVLKSAFQSRGND---VSKFNV------SHLIIMIHIYYNNLITG 325
+ V+ P+ + L+ + RG++ VS N+ SHLI+ + I +L T
Sbjct: 172 MVFVENVTTIPISTLEELRMILE-RGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQ 230
Query: 326 ENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENS 385
KLS VDLAGSE + +G ++ + + KSLSALGDV+ +L+S +PY N
Sbjct: 231 SAARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHIPYRNH 290
Query: 386 MLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTV 431
LT +++DSLG ++KTLM VN+ P +N+ ET +SL ++SR R+ V
Sbjct: 291 KLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIV 336
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 187 bits (476), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 123/331 (37%), Positives = 180/331 (54%), Gaps = 21/331 (6%)
Query: 115 GNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVG 170
G I+V+CR RPL E E + + D+ T+ DD K +DRV+ +
Sbjct: 5 GKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDD----KAKQHMYDRVFDGNAT 60
Query: 171 QAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNS 230
Q ++F D + VQSA+DGYNV IFAYGQT SGKT T+ G+ + GL R ELF +
Sbjct: 61 QDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKK 120
Query: 231 DTTATARFNFAVTVF--ELYNEQLRELL-PQTGNGLA---KIRLQSLESSIELVQEKVDN 284
D+ +F+F++ + ELY + L +LL P+ L K + + S + +
Sbjct: 121 DSN---KFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSIST 177
Query: 285 PLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMIHIYYNNLITGENLYSKLSLVDLAGS 340
E +++ + R + N SHLI+ + I NL T KLS VDLAGS
Sbjct: 178 YEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGS 237
Query: 341 EGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSK 400
E + +G ++ + + KSLSALGDV+S+L+S +PY N LT +++DSLG ++K
Sbjct: 238 ERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAK 297
Query: 401 TLMIVNICPNAANMSETLSSLNFSSRARSTV 431
TLM VNI P +N+ ET +SL ++SR RS V
Sbjct: 298 TLMFVNISPAESNLDETHNSLTYASRVRSIV 328
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 179 bits (455), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 131/355 (36%), Positives = 190/355 (53%), Gaps = 47/355 (13%)
Query: 115 GNIKVFCRTRPLFEDEG---PSVVEF-------TDDCT-IRVNTGDD---TISN-----P 155
GNI+VFCR RP+ E P ++ F +D T + ++ D+ T+S P
Sbjct: 22 GNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPP 81
Query: 156 KKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHD-- 213
+ DF FDRV+ P GQ E+F ++ VQSALDGY V IFAYGQT SGKT TMEG
Sbjct: 82 RHDFSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDP 141
Query: 214 --RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG-----NGLAKI 266
GL R LF ++ + ++F + E+YNE +R+LL TG G +I
Sbjct: 142 QLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLL-ATGTRKGQGGECEI 200
Query: 267 RLQSLESSIEL-----------VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMI 315
R ++ S EL +++VD L ++ ++ ++ N+ S + SH + +
Sbjct: 201 R-RAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERS--SRSHSVFQL 257
Query: 316 HIYYNNLITGENLYSKLSLVDLAGSE----GLIAEDDSGERITDVLHVMKSLSALGDVLS 371
I + G + LSLVDLAGSE GL ER+ + + SLS LG V+
Sbjct: 258 QISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIM 317
Query: 372 SLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSR 426
+L++++ VPY NS LT +L +SLG S+K LM VNI P N+SE+L+SL F+S+
Sbjct: 318 ALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASK 372
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 172 bits (436), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/326 (35%), Positives = 177/326 (54%), Gaps = 21/326 (6%)
Query: 116 NIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELF 175
NIKV CR RPL E E V D + G+DT+ K + FDRV+ Q +++
Sbjct: 8 NIKVMCRFRPLNESE----VNRGDKYIAKFQ-GEDTVVIASKPYAFDRVFQSSTSQEQVY 62
Query: 176 SDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHD---RGLYARCFEELFDLSNSD 231
+D + V+ L+GYN +IFAYGQT SGKTHTMEG HD G+ R +++F+ S
Sbjct: 63 NDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYS- 121
Query: 232 TTATARFNFAVTVFELYNEQLRELLPQTGNGLA----KIRLQSLESSIELVQEKVDNPLE 287
F+ V+ FE+Y +++R+LL + L+ K R+ ++ E V +P E
Sbjct: 122 MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERF---VCSPDE 178
Query: 288 FSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGL 343
+ +R V+ N SH I +I++ N T + L KL LVDLAGSE +
Sbjct: 179 VMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKV 238
Query: 344 IAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLM 403
G + + ++ KSLSALG+V+S+L VPY +S +T++L DSLG + +T +
Sbjct: 239 SKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTI 298
Query: 404 IVNICPNAANMSETLSSLNFSSRARS 429
++ P++ N SET S+L F RA++
Sbjct: 299 VICCSPSSYNESETKSTLLFGQRAKT 324
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 172 bits (435), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/326 (35%), Positives = 177/326 (54%), Gaps = 21/326 (6%)
Query: 116 NIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELF 175
NIKV CR RPL E E V D + G+DT+ K + FDRV+ Q +++
Sbjct: 8 NIKVMCRFRPLNESE----VNRGDKYIAKFQ-GEDTVVIASKPYAFDRVFQSSTSQEQVY 62
Query: 176 SDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHD---RGLYARCFEELFDLSNSD 231
+D + V+ L+GYN +IFAYGQT SGKTHTMEG HD G+ R +++F+ S
Sbjct: 63 NDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYS- 121
Query: 232 TTATARFNFAVTVFELYNEQLRELLPQTGNGLA----KIRLQSLESSIELVQEKVDNPLE 287
F+ V+ FE+Y +++R+LL + L+ K R+ ++ E V +P E
Sbjct: 122 MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERF---VCSPDE 178
Query: 288 FSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGL 343
+ +R V+ N SH I +I++ N T + L KL LVDLAGSE +
Sbjct: 179 VMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKV 238
Query: 344 IAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLM 403
G + + ++ KSLSALG+V+S+L VPY +S +T++L DSLG + +T +
Sbjct: 239 SKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTI 298
Query: 404 IVNICPNAANMSETLSSLNFSSRARS 429
++ P++ N SET S+L F RA++
Sbjct: 299 VICCSPSSYNESETKSTLLFGQRAKT 324
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 172 bits (435), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 140/409 (34%), Positives = 216/409 (52%), Gaps = 49/409 (11%)
Query: 62 STKVQRLKDEIKFVKEDYLELRQEATD----LQEYSNAKI--DRVTRYLGVLADKTRKLG 115
++K+ LK++I +KE L+++ D ++E + I + V R L + R G
Sbjct: 2 ASKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR--G 59
Query: 116 NIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDT----------ISNPKK--DFEFDR 163
NI+V+ R RP ++ +E +D I VN DD I N + +F+FD+
Sbjct: 60 NIRVYLRIRPALKN-----LENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDK 114
Query: 164 VYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEE 223
++ ++F +V VQS+LDGYNV+IFAYGQT SGKT TM G+
Sbjct: 115 IFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGD--GIIPSTISH 172
Query: 224 LFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-------GLA-KIR-------- 267
+F+ N T + E+YNE + +LL N GL +IR
Sbjct: 173 IFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTT 232
Query: 268 LQSLESSIEL-VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGE 326
+ +S++L +E V+ L+ + L+S + N+ S + SH I +IH+ +N TG
Sbjct: 233 TITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHS--SRSHSIFIIHLSGSNAKTGA 290
Query: 327 NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT---SRKDIVPYE 383
+ Y L+LVDLAGSE + G+R+ + ++ KSLSALGDV+ +L S K +P+
Sbjct: 291 HSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFR 350
Query: 384 NSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 432
NS LT +L SL SKTLM VNI P++++++ETL+SL F+S+ ST L
Sbjct: 351 NSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 399
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 171 bits (433), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 116/326 (35%), Positives = 176/326 (53%), Gaps = 21/326 (6%)
Query: 116 NIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELF 175
NIKV CR RPL E E V D + G+DT+ K + FDRV+ Q +++
Sbjct: 8 NIKVMCRFRPLNESE----VNRGDKYVAKFQ-GEDTVMIASKPYAFDRVFQSSTSQEQVY 62
Query: 176 SDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHD---RGLYARCFEELFDLSNSD 231
+D + V+ L+GYN +IFAYGQT SGK HTMEG HD G+ R +++F+ S
Sbjct: 63 NDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQDIFNYIYS- 121
Query: 232 TTATARFNFAVTVFELYNEQLRELLPQTGNGLA----KIRLQSLESSIELVQEKVDNPLE 287
F+ V+ FE+Y +++R+LL + L+ K R+ ++ E V +P E
Sbjct: 122 MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERF---VCSPDE 178
Query: 288 FSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGL 343
+ +R V+ N SH I +I++ N T + L KL LVDLAGSE +
Sbjct: 179 VMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKV 238
Query: 344 IAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLM 403
G + + ++ KSLSALG+V+S+L VPY +S +T++L DSLG + +T +
Sbjct: 239 SKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTI 298
Query: 404 IVNICPNAANMSETLSSLNFSSRARS 429
++ P++ N SET S+L F RA++
Sbjct: 299 VICCSPSSYNESETKSTLLFGQRAKT 324
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 170 bits (431), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 121/350 (34%), Positives = 189/350 (54%), Gaps = 38/350 (10%)
Query: 115 GNIKVFCRTRPLF----EDEGPSVVEFTDDC----TIRVNTGDDTISNPKKDFEFDRVYG 166
GNI+V+CR RP +D ++E ++ ++ +N + I + +F+FD ++
Sbjct: 5 GNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILS--YNFQFDMIFE 62
Query: 167 PHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFD 226
P E+F +++ VQS+LDGYNV IFAYGQT SGKT+TM + G+ +F
Sbjct: 63 PSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGD--GMIPMTLSHIFK 120
Query: 227 LSNSDTTATARFNFAVTVFELYNEQLRELLP--QTGNGLAKIRLQSLESSIELVQEK--- 281
+ + + E+YNE + +LL ++ + + +I L S + I EK
Sbjct: 121 WTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEI-LDSQKHDIRHDHEKQGT 179
Query: 282 ---------------VDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGE 326
VD L+ + ++S +R N+ S + SH + M+HI NL TGE
Sbjct: 180 YITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERS--SRSHSVFMVHINGRNLHTGE 237
Query: 327 NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS---RKDIVPYE 383
KL+LVDLAGSE + + +GER+ + ++ KSLS LGDV+ +L + K +P+
Sbjct: 238 TSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFR 297
Query: 384 NSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLS 433
NS LT +L SL SKTLM VNI P+ ++SETL+SL F+S+ ST ++
Sbjct: 298 NSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIA 347
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 168 bits (426), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 126/350 (36%), Positives = 186/350 (53%), Gaps = 41/350 (11%)
Query: 115 GNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDT----------ISNPKK--DFEFD 162
GNI+V+CR RP ++ +E +D I VN DD I N + +F+FD
Sbjct: 3 GNIRVYCRIRPALKN-----LENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFD 57
Query: 163 RVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFE 222
+++ ++F +V VQS+LDGYNV IFAYGQT SGKT TM G+
Sbjct: 58 KIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG--DGIIPSTIS 115
Query: 223 ELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-------GLA-KIR------- 267
+F+ N T + E+YNE + +LL N GL +IR
Sbjct: 116 HIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKT 175
Query: 268 -LQSLESSIEL-VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITG 325
+ +S +L +E V+ L+ + L+S + N+ S + SH I +IH+ +N TG
Sbjct: 176 TTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHS--SASHSIFIIHLSGSNAKTG 233
Query: 326 ENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT---SRKDIVPY 382
+ Y L+LVDLAGSE + G+R+ + ++ KSLS LGDV+ +L S K +P+
Sbjct: 234 AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPF 293
Query: 383 ENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 432
NS LT +L SL SKTLM VNI P++++++ETL+SL F+S+ ST L
Sbjct: 294 RNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 168 bits (426), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 126/351 (35%), Positives = 187/351 (53%), Gaps = 41/351 (11%)
Query: 114 LGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDT----------ISNPKK--DFEF 161
+GNI+V+CR RP ++ +E +D I VN DD I N + +F+F
Sbjct: 1 MGNIRVYCRIRPALKN-----LENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKF 55
Query: 162 DRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCF 221
D+++ ++F +V VQS+LDGYNV IFAYGQT SGKT TM G+
Sbjct: 56 DKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG--DGIIPSTI 113
Query: 222 EELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-------GLA-KIR------ 267
+F+ N T + E+YNE + +LL N GL +IR
Sbjct: 114 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETK 173
Query: 268 --LQSLESSIEL-VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLIT 324
+ +S +L +E V+ L+ + L+S + N+ S + SH I +IH+ +N T
Sbjct: 174 TTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHS--SRSHSIFIIHLSGSNAKT 231
Query: 325 GENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT---SRKDIVP 381
G + Y L+LVDLAGSE + G+R+ + ++ KSLS LGDV+ +L S K +P
Sbjct: 232 GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIP 291
Query: 382 YENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 432
+ NS LT +L SL SKTLM VNI P++++++ETL+SL F+S+ ST L
Sbjct: 292 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 342
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 126/350 (36%), Positives = 186/350 (53%), Gaps = 41/350 (11%)
Query: 115 GNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDT----------ISNPKK--DFEFD 162
GNI+V+CR RP ++ +E +D I VN DD I N + +F+FD
Sbjct: 14 GNIRVYCRIRPALKN-----LENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFD 68
Query: 163 RVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFE 222
+++ ++F +V VQS+LDGYNV IFAYGQT SGKT TM G+
Sbjct: 69 KIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG--DGIIPSTIS 126
Query: 223 ELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-------GLA-KIR------- 267
+F+ N T + E+YNE + +LL N GL +IR
Sbjct: 127 HIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKT 186
Query: 268 -LQSLESSIEL-VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITG 325
+ +S +L +E V+ L+ + L+S + N+ S + SH I +IH+ +N TG
Sbjct: 187 TTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHS--SRSHSIFIIHLSGSNAKTG 244
Query: 326 ENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT---SRKDIVPY 382
+ Y L+LVDLAGSE + G+R+ + ++ KSLS LGDV+ +L S K +P+
Sbjct: 245 AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPF 304
Query: 383 ENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 432
NS LT +L SL SKTLM VNI P++++++ETL+SL F+S+ ST L
Sbjct: 305 RNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 354
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 126/350 (36%), Positives = 186/350 (53%), Gaps = 41/350 (11%)
Query: 115 GNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDT----------ISNPKK--DFEFD 162
GNI+V+CR RP ++ +E +D I VN DD I N + +F+FD
Sbjct: 3 GNIRVYCRIRPALKN-----LENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFD 57
Query: 163 RVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFE 222
+++ ++F +V VQS+LDGYNV IFAYGQT SGKT TM G+
Sbjct: 58 KIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG--DGIIPSTIS 115
Query: 223 ELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-------GLA-KIR------- 267
+F+ N T + E+YNE + +LL N GL +IR
Sbjct: 116 HIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKT 175
Query: 268 -LQSLESSIEL-VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITG 325
+ +S +L +E V+ L+ + L+S + N+ S + SH I +IH+ +N TG
Sbjct: 176 TTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHS--SRSHSIFIIHLSGSNAKTG 233
Query: 326 ENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT---SRKDIVPY 382
+ Y L+LVDLAGSE + G+R+ + ++ KSLS LGDV+ +L S K +P+
Sbjct: 234 AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIPF 293
Query: 383 ENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 432
NS LT +L SL SKTLM VNI P++++++ETL+SL F+S+ ST L
Sbjct: 294 RNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 167 bits (423), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 181/339 (53%), Gaps = 22/339 (6%)
Query: 115 GNIKVFCRTRPLFEDEGPSVV---EFTDDCTIRVNTGDDTISNP--KKDFEFDRVYGPHV 169
GNI+VFCR RP E E + + D+ T+ + + D + ++ F FD+V+ P
Sbjct: 56 GNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 115
Query: 170 GQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSN 229
Q+++F V P +QSALDGYN+ IFAYGQT SGKT+TM+G G+ R + LFD
Sbjct: 116 SQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIR 175
Query: 230 SDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL-QSLESSI---ELVQEKVDNP 285
+ T E+YNE L +LL + +IR+ ++ ++ I + +E V +P
Sbjct: 176 GYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDM-EIRMAKNNKNDIYVSNITEETVLDP 234
Query: 286 LEFSKVLKSAFQSR------GNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAG 339
++ +A +R GN+ S + SH + + + + E ++LVDLAG
Sbjct: 235 NHLRHLMHTAKMNRATASTAGNERS--SRSHAVTKLELIGRHAEKQEISVGSINLVDLAG 292
Query: 340 SEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESS 399
SE + R+T+ ++ +SLS L +V+ +L ++D +PY NS LT +L SLG +S
Sbjct: 293 SES----PKTSTRMTETKNIKRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNS 348
Query: 400 KTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRD 438
KTLM +N+ P E++ SL F++ S ++ R+
Sbjct: 349 KTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRN 387
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 167 bits (423), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 181/339 (53%), Gaps = 22/339 (6%)
Query: 115 GNIKVFCRTRPLFEDEGPSVV---EFTDDCTIRVNTGDDTISNP--KKDFEFDRVYGPHV 169
GNI+VFCR RP E E + + D+ T+ + + D + ++ F FD+V+ P
Sbjct: 67 GNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 126
Query: 170 GQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSN 229
Q+++F V P +QSALDGYN+ IFAYGQT SGKT+TM+G G+ R + LFD
Sbjct: 127 SQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIR 186
Query: 230 SDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL-QSLESSI---ELVQEKVDNP 285
+ T E+YNE L +LL + +IR+ ++ ++ I + +E V +P
Sbjct: 187 GYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDM-EIRMAKNNKNDIYVSNITEETVLDP 245
Query: 286 LEFSKVLKSAFQSR------GNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAG 339
++ +A +R GN+ S + SH + + + + E ++LVDLAG
Sbjct: 246 NHLRHLMHTAKMNRATASTAGNERS--SRSHAVTKLELIGRHAEKQEISVGSINLVDLAG 303
Query: 340 SEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESS 399
SE + R+T+ ++ +SLS L +V+ +L ++D +PY NS LT +L SLG +S
Sbjct: 304 SES----PKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNS 359
Query: 400 KTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRD 438
KTLM +N+ P E++ SL F++ S ++ R+
Sbjct: 360 KTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRN 398
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 166 bits (421), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 181/339 (53%), Gaps = 22/339 (6%)
Query: 115 GNIKVFCRTRPLFEDEGPSVV---EFTDDCTIRVNTGDDTISNP--KKDFEFDRVYGPHV 169
GNI+VFCR RP E E + + D+ T+ + + D + ++ F FD+V+ P
Sbjct: 53 GNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 112
Query: 170 GQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSN 229
Q+++F V P +QSALDGYN+ IFAYGQT SGKT+TM+G G+ R + LFD
Sbjct: 113 SQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIR 172
Query: 230 SDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL-QSLESSI---ELVQEKVDNP 285
+ T E+YNE L +LL + +IR+ ++ ++ I + +E V +P
Sbjct: 173 GYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDM-EIRMAKNNKNDIYVSNITEETVLDP 231
Query: 286 LEFSKVLKSAFQSR------GNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAG 339
++ +A +R GN+ S + SH + + + + E ++LVDLAG
Sbjct: 232 NHLRHLMHTAKMNRATASTAGNERS--SRSHAVTKLELIGRHAEKQEISVGSINLVDLAG 289
Query: 340 SEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESS 399
SE + R+T+ ++ +SLS L +V+ +L ++D +PY NS LT +L SLG +S
Sbjct: 290 SES----PKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNS 345
Query: 400 KTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRD 438
KTLM +N+ P E++ SL F++ S ++ R+
Sbjct: 346 KTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRN 384
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 165 bits (418), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 125/350 (35%), Positives = 185/350 (52%), Gaps = 41/350 (11%)
Query: 115 GNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDT----------ISNPKK--DFEFD 162
GNI+V+CR RP ++ +E +D I VN DD I N + +F+FD
Sbjct: 3 GNIRVYCRIRPALKN-----LENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFD 57
Query: 163 RVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFE 222
+++ ++F +V VQS+LDGYNV IFAYGQT SGKT TM G+
Sbjct: 58 KIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG--DGIIPSTIS 115
Query: 223 ELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-------GLA-KIR------- 267
+F+ N T + E+YNE + +LL N GL +IR
Sbjct: 116 HIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKT 175
Query: 268 -LQSLESSIEL-VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITG 325
+ +S +L +E V+ L+ + L+S + N+ S + SH I +IH+ +N TG
Sbjct: 176 TTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHS--SRSHSIFIIHLSGSNAKTG 233
Query: 326 ENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT---SRKDIVPY 382
+ Y L+LVDLAGS + G+R+ + ++ KSLS LGDV+ +L S K +P+
Sbjct: 234 AHSYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPF 293
Query: 383 ENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 432
NS LT +L SL SKTLM VNI P++++++ETL+SL F+S+ ST L
Sbjct: 294 RNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 198/363 (54%), Gaps = 37/363 (10%)
Query: 117 IKVFCRTRPLFEDEGPS----VVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQA 172
IKV CR RPL + E + VV+F + N ++ IS K + FD+V+ P+ Q
Sbjct: 13 IKVVCRFRPLNDSEEKAGSKFVVKFPN------NVEENCISIAGKVYLFDKVFKPNASQE 66
Query: 173 ELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHD---RGLYARCFEELFDLS 228
+++++ + V L GYN +IFAYGQT SGKTHTMEG D +G+ R ++F+
Sbjct: 67 KVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHI 126
Query: 229 NSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLA----KIRLQSLESSIELVQEKVDN 284
+ F+ V+ +E+Y +++R+LL + L+ K R+ ++ + E V +
Sbjct: 127 YA-MEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERF---VSS 182
Query: 285 PLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYNNLITGENLYSKLSLVDLAGS 340
P + +V++ +R V+ N SH + +I++ NL + L KL LVDLAGS
Sbjct: 183 PEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGS 242
Query: 341 EGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT-SRKDIVPYENSMLTKVLADSLGESS 399
E + G + + ++ KSLSALG+V+S+L K +PY +S LT++L +SLG ++
Sbjct: 243 EKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNA 302
Query: 400 KTLMIVNICPNAANMSETLSSLNFSSRARST--VLSLGNRDTIKKWRDIANDARKELYER 457
+T +++ P + N SET S+L+F RA++ V+ + T ++W K YE+
Sbjct: 303 RTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEW--------KRRYEK 354
Query: 458 EKE 460
EKE
Sbjct: 355 EKE 357
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 110/334 (32%), Positives = 179/334 (53%), Gaps = 22/334 (6%)
Query: 115 GNIKVFCRTRPLFEDEGPSVV---EFTDDCTIRVNTGDDTISNP--KKDFEFDRVYGPHV 169
GNI+VFCR RP E E + + D+ T+ + + D + ++ F FD+V+ P
Sbjct: 56 GNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 115
Query: 170 GQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSN 229
Q+++F V P +QSALDGYN+ IFAYGQ+ SGKT+TM+G G+ R + LFD
Sbjct: 116 SQSDIFEMVSPLIQSALDGYNICIFAYGQSGSGKTYTMDGVPESVGVIPRTVDLLFDSIR 175
Query: 230 SDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL-QSLESSI---ELVQEKVDNP 285
+ T E+YNE L +LL + +IR+ ++ ++ I + +E V +P
Sbjct: 176 GYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDM-EIRMAKNNKNDIYVSNITEETVLDP 234
Query: 286 LEFSKVLKSAFQSR------GNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAG 339
++ +A +R GN+ S + SH + + + + E ++LVDLAG
Sbjct: 235 NHLRHLMHTAKMNRATASTAGNERS--SRSHAVTKLELIGRHAEKQEISVGSINLVDLAG 292
Query: 340 SEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESS 399
SE + R+T+ ++ +SLS L +V+ +L ++D +PY NS LT +L SLG +S
Sbjct: 293 SES----PKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNS 348
Query: 400 KTLMIVNICPNAANMSETLSSLNFSSRARSTVLS 433
KTLM +N+ P E++ SL F++ S ++
Sbjct: 349 KTLMFINVSPFQDCFQESVKSLRFAASVNSCKMT 382
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 164 bits (415), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 111/338 (32%), Positives = 180/338 (53%), Gaps = 22/338 (6%)
Query: 116 NIKVFCRTRPLFEDEGPSVV---EFTDDCTIRVNTGDDTISNP--KKDFEFDRVYGPHVG 170
NI+VFCR RP E E + + D+ T+ + + D + ++ F FD+V+ P
Sbjct: 60 NIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSS 119
Query: 171 QAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNS 230
Q+++F V P +QSALDGYN+ IFAYGQT SGKT+TM+G G+ R + LFD
Sbjct: 120 QSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRG 179
Query: 231 DTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL-QSLESSI---ELVQEKVDNPL 286
+ T E+YNE L +LL + +IR+ ++ ++ I + +E V +P
Sbjct: 180 YRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDM-EIRMAKNNKNDIYVSNITEETVLDPN 238
Query: 287 EFSKVLKSAFQSR------GNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGS 340
++ +A +R GN+ S + SH + + + + E ++LVDLAGS
Sbjct: 239 HLRHLMHTAKMNRATASTAGNERS--SRSHAVTKLELIGRHAEKQEISVGSINLVDLAGS 296
Query: 341 EGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSK 400
E + R+T+ ++ +SLS L +V+ +L ++D +PY NS LT +L SLG +SK
Sbjct: 297 ES----PKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSK 352
Query: 401 TLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRD 438
TLM +N+ P E++ SL F++ S ++ R+
Sbjct: 353 TLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRN 390
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 163 bits (413), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 119/346 (34%), Positives = 177/346 (51%), Gaps = 38/346 (10%)
Query: 115 GNIKVFCRTRPLFEDEGPS-----VVEFTDDCT---IRVNTGDDTISNPKKDFEFDRVYG 166
GNI+V+CR RP E + V F DD + +N G+ + F+FD+++
Sbjct: 28 GNIRVYCRIRPPLPHEDDNIEHIKVQPFDDDNGDQGMTINRGNSQVI----PFKFDKIFD 83
Query: 167 PHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFD 226
E+F +V +QS+LDGYNV IFAYGQT SGKT+TM G+ +F
Sbjct: 84 QQETNDEIFKEVGQLIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGD--GIVPATINHIFS 141
Query: 227 LSNSDTTATARFNFAVTVFELYNEQLRELL----PQTGNG---------------LAKIR 267
+ + + E+YNE + +LL P N L
Sbjct: 142 WIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIRHDQELKTTY 201
Query: 268 LQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGEN 327
+ ++ + + ++ VD L+ + L+S + N+ S + SH I +IH+ N TGE
Sbjct: 202 ITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHS--SRSHSIFIIHLEGKNEGTGEK 259
Query: 328 LYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS---RKDIVPYEN 384
L+LVDLAGSE L + GER+ + + KSLS LGDV+ +L S +K +P+ N
Sbjct: 260 SQGILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDGQKRHIPFRN 319
Query: 385 SMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARST 430
S LT +L SL SSKTLM VNI P A +++ET++SL F+S+ +T
Sbjct: 320 SKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKVNNT 365
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 120/345 (34%), Positives = 181/345 (52%), Gaps = 53/345 (15%)
Query: 116 NIKVFCRTRPL----FEDEGPSVVEF--TDDCTIRVNTGDDTISNPKKDFEFDRVYGPHV 169
+IKV R RP E G +V F D CT+ D+ + F FDRV+
Sbjct: 7 SIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTV------DS-KEAQGSFTFDRVFDMSC 59
Query: 170 GQAELFS-DVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHD----RGLYARCFEEL 224
Q+++F ++P V L+GYN ++FAYGQT +GK++TM G+S D RG+ R E++
Sbjct: 60 KQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQI 119
Query: 225 FDLSNSDTTATARFNFAVTVFELYNEQLRELL-PQTGN--------------GLAKIRLQ 269
F S + A + V+ E+Y E++R+LL PQ N GL +I +
Sbjct: 120 F-TSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVS 178
Query: 270 SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYNNLITG 325
S++ E +V++ +R + N SH I +I I N+ TG
Sbjct: 179 SVQ--------------EVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETG 224
Query: 326 ENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDI-VPYEN 384
+L LVDLAGSE + SG+ + + + KSLSALG V+++LT K VPY +
Sbjct: 225 SAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRD 284
Query: 385 SMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 429
S LT++L +SLG +S+T +I+N P++ N +ETLS+L F RA+S
Sbjct: 285 SKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKS 329
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 157 bits (397), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 111/341 (32%), Positives = 185/341 (54%), Gaps = 39/341 (11%)
Query: 117 IKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPK-------KDFEFDRVYGPHV 169
++V R RP+ E + + D +++ G ++ NPK K F FD VY +
Sbjct: 23 VRVVVRCRPMNGKEKAASYDKVVDVDVKL--GQVSVKNPKGTAHEMPKTFTFDAVYDWNA 80
Query: 170 GQAELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHD---RGLYARCFEELF 225
Q EL+ + +P V S L G+N +IFAYGQT +GKT+TMEG D RG+ F+ +F
Sbjct: 81 KQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIF 140
Query: 226 DLSNSDTTATARFNFAVTVFELYNEQLRELL-------------PQTGNGLAKIRLQSLE 272
++ + ++ + E+Y E++R+LL P TG + ++ L
Sbjct: 141 --THISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTG-----VYVKDLS 193
Query: 273 SSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNL-ITGENL--Y 329
S + +++++ + +S + N+ S + SH I +I I + + + GEN
Sbjct: 194 SFVTKSVKEIEHVMNVGNQNRSVGATNMNEHS--SRSHAIFVITIECSEVGLDGENHIRV 251
Query: 330 SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDI-VPYENSMLT 388
KL+LVDLAGSE GER+ + + SLSALG+V+S+L K +PY +S LT
Sbjct: 252 GKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLT 311
Query: 389 KVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 429
++L DSLG ++KT+M+ N+ P + N+ ETL++L +++RA++
Sbjct: 312 RLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKN 352
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 156 bits (395), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 120/344 (34%), Positives = 182/344 (52%), Gaps = 37/344 (10%)
Query: 116 NIKVFCRTRPLFEDE-GPSVVEFTDDCTIR-VNTGDDTISNPKKDFEFDRVYGPHVGQAE 173
NI+V+ R RPL E E D R V T S K F FDR +GP Q +
Sbjct: 24 NIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCD 83
Query: 174 LFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSS-----------HDRGLYARCF 221
++S V P ++ L+GYN ++FAYGQT +GKTHTM G+ D G+ R
Sbjct: 84 VYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRAL 143
Query: 222 EELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL--QSLESSIELV 278
LFD L + T R ++ ELYNE+L +LL + + KIR+ S + ++
Sbjct: 144 SHLFDELRMMEVEYTMRISY----LELYNEELCDLL--STDDTTKIRIFDDSTKKGSVII 197
Query: 279 QEKVDNPL----EFSKVLKSAFQSRGNDVSKFNV----SHLI--IMIHIYYNNLITGENL 328
Q + P+ + K+L+ + R + N SH + I++HI N I GE++
Sbjct: 198 QGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENG-IEGEDM 256
Query: 329 --YSKLSLVDLAGSEGLI-AEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENS 385
KL+LVDLAGSE + A ++ G R+ + +++ +SL LG V+++L R VPY S
Sbjct: 257 LKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRES 316
Query: 386 MLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 429
LT++L +SLG +KT +I I P ++ ETLS+L ++ RA++
Sbjct: 317 KLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKN 360
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 173/339 (51%), Gaps = 36/339 (10%)
Query: 116 NIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTG----DDTISNPKK---DFEFDRV 164
NIKV R RPL E +++ D+ + +V + + + KK F FD V
Sbjct: 5 NIKVIVRCRPLNARETRENALNIIRM-DEASAQVIVDPPEQEKSATQAKKVPRTFTFDAV 63
Query: 165 YGPHVGQAELF-SDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEE 223
Y +F + +P + + L+G+N +IFAYGQT +GKT TM G+ + G F+
Sbjct: 64 YDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKH 123
Query: 224 LFDLSNSDTTATARFNFAV--TVFELYNEQLREL------LPQTGNGLAKIRLQSLESSI 275
LFD NS +++ NF V + ELYNE++R+L LP + I + L
Sbjct: 124 LFDAINS---SSSNQNFLVIGSYLELYNEEIRDLIKNNTKLPLKEDKTRGIYVDGLS--- 177
Query: 276 ELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMIHIYYNNLITGENL--Y 329
+V E S ++ F +R ++ N SH I M+ I + +I + +
Sbjct: 178 ---MHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRV 234
Query: 330 SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTK 389
KL+LVDLAGSE +GE + + + SLSALG V+S L +PY +S LT+
Sbjct: 235 GKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTR 294
Query: 390 VLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 428
+L DSLG +SKTLM NI P + N ET+S+L ++ RA+
Sbjct: 295 LLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAK 333
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 110/357 (30%), Positives = 175/357 (49%), Gaps = 56/357 (15%)
Query: 117 IKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNP-------------KKDFEFDR 163
+KV R RP+ E + C + V+ + I NP K F +D
Sbjct: 3 VKVAVRIRPMNRRE----TDLHTKCVVDVD-ANKVILNPVNTNLSKGDARGQPKVFAYDH 57
Query: 164 VYGP--------HVGQAELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDR 214
+ + GQ +F + + +Q+A DGYN IFAYGQT SGK++TM G++
Sbjct: 58 CFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQP 117
Query: 215 GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG-------------- 260
GL R LF+ + + F V+ E+YNE++R+LL G
Sbjct: 118 GLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLG 177
Query: 261 ---NGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHI 317
+GL+K+ + S + IE + + + + + SR + V K ++H + +
Sbjct: 178 PYVDGLSKLAVTSYK-DIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVK- 235
Query: 318 YYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT--- 374
+ +GE + KLSLVDLAGSE +G+R+ + ++ KSL+ LG V+S+L
Sbjct: 236 ---SGTSGEKV-GKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQS 291
Query: 375 ---SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 428
++ VPY +S+LT +L DSLG +SKT M+ + P A N ETLS+L ++ RA+
Sbjct: 292 AGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 113/347 (32%), Positives = 172/347 (49%), Gaps = 40/347 (11%)
Query: 115 GNIKVFCRTR---------------PLFEDEGPSVV--EFTDDCTIRVNTGDDTISNPKK 157
GNI+VFCR R + + E P + E + I N ++ SN +
Sbjct: 374 GNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNI-NNNFSNLR- 431
Query: 158 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLY 217
F FD+++ +F ++ +Q +LDG NV +FAYGQT SGKT TM S G+
Sbjct: 432 -FLFDKIFEREQSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTM--SHPTNGMI 488
Query: 218 A----RCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL-----PQTGNGLAKIRL 268
+ F ++ +L + T R F E+YNE + +LL P T + +
Sbjct: 489 PLSLKKIFNDIEELKEKGWSYTVRGKF----IEIYNEAIVDLLNPKIDPNTKYEIKHDDI 544
Query: 269 QSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMIHIYYNNLIT 324
+ + + +P + +L A + R +K N SH I +I + N +T
Sbjct: 545 AGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLT 604
Query: 325 GENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDI-VPYE 383
E+ Y L+L+DLAGSE L G+R+ + + KSLS LGDV+ SL + VPY
Sbjct: 605 KESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYR 664
Query: 384 NSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARST 430
NS LT +L SLG +SKTLM VNI P +++ET++SL F+++ +T
Sbjct: 665 NSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNT 711
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 143 bits (360), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 112/353 (31%), Positives = 175/353 (49%), Gaps = 39/353 (11%)
Query: 110 KTRKLGNIKVFCRTRPLFEDEGPSVVEFTDDC-----TIRVNTGDDTISNPKKDFEFDRV 164
K K NI+V R RP E + +C + V TG + +K + FD V
Sbjct: 12 KEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMV 71
Query: 165 YGPHVGQAELF-SDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDR--------- 214
+G Q +++ S V P + + GYN +IFAYGQT +GKT TMEG
Sbjct: 72 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDP 131
Query: 215 --GLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL 271
G+ R ++F+ L+++ T F+ V++ E+YNE+L +LL + + RLQ
Sbjct: 132 LAGIIPRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMF 185
Query: 272 ESS-------IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYY 319
+ I+ ++E V N E ++L+ R + N SH + + I+
Sbjct: 186 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 245
Query: 320 N-NLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR 376
I GE L KL+LVDLAGSE + +R + ++ +SL LG V+++L R
Sbjct: 246 KETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER 305
Query: 377 KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 429
VPY S LT++L DSLG ++T +I I P + N+ ETLS+L ++ RA++
Sbjct: 306 TPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 143 bits (360), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 112/353 (31%), Positives = 175/353 (49%), Gaps = 39/353 (11%)
Query: 110 KTRKLGNIKVFCRTRPLFEDEGPSVVEFTDDC-----TIRVNTGDDTISNPKKDFEFDRV 164
K K NI+V R RP E + +C + V TG + +K + FD V
Sbjct: 12 KEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMV 71
Query: 165 YGPHVGQAELF-SDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDR--------- 214
+G Q +++ S V P + + GYN +IFAYGQT +GKT TMEG
Sbjct: 72 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDP 131
Query: 215 --GLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL 271
G+ R ++F+ L+++ T F+ V++ E+YNE+L +LL + + RLQ
Sbjct: 132 LAGIIPRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMF 185
Query: 272 ESS-------IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYY 319
+ I+ ++E V N E ++L+ R + N SH + + I+
Sbjct: 186 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 245
Query: 320 N-NLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR 376
I GE L KL+LVDLAGSE + +R + ++ +SL LG V+++L R
Sbjct: 246 KETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER 305
Query: 377 KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 429
VPY S LT++L DSLG ++T +I I P + N+ ETLS+L ++ RA++
Sbjct: 306 TPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 143 bits (360), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 112/353 (31%), Positives = 175/353 (49%), Gaps = 39/353 (11%)
Query: 110 KTRKLGNIKVFCRTRPLFEDEGPSVVEFTDDC-----TIRVNTGDDTISNPKKDFEFDRV 164
K K NI+V R RP E + +C + V TG + +K + FD V
Sbjct: 12 KEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMV 71
Query: 165 YGPHVGQAELF-SDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDR--------- 214
+G Q +++ S V P + + GYN +IFAYGQT +GKT TMEG
Sbjct: 72 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVP 131
Query: 215 --GLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL 271
G+ R ++F+ L+++ T F+ V++ E+YNE+L +LL + + RLQ
Sbjct: 132 LAGIIPRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMF 185
Query: 272 ESS-------IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYY 319
+ I+ ++E V N E ++L+ R + N SH + + I+
Sbjct: 186 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 245
Query: 320 N-NLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR 376
I GE L KL+LVDLAGSE + +R + ++ +SL LG V+++L R
Sbjct: 246 KETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER 305
Query: 377 KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 429
VPY S LT++L DSLG ++T +I I P + N+ ETLS+L ++ RA++
Sbjct: 306 TPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 143 bits (360), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 112/353 (31%), Positives = 175/353 (49%), Gaps = 39/353 (11%)
Query: 110 KTRKLGNIKVFCRTRPLFEDEGPSVVEFTDDC-----TIRVNTGDDTISNPKKDFEFDRV 164
K K NI+V R RP E + +C + V TG + +K + FD V
Sbjct: 12 KEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMV 71
Query: 165 YGPHVGQAELF-SDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDR--------- 214
+G Q +++ S V P + + GYN +IFAYGQT +GKT TMEG
Sbjct: 72 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDP 131
Query: 215 --GLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL 271
G+ R ++F+ L+++ T F+ V++ E+YNE+L +LL + + RLQ
Sbjct: 132 LDGIIPRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMF 185
Query: 272 ESS-------IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYY 319
+ I+ ++E V N E ++L+ R + N SH + + I+
Sbjct: 186 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 245
Query: 320 N-NLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR 376
I GE L KL+LVDLAGSE + +R + ++ +SL LG V+++L R
Sbjct: 246 KETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER 305
Query: 377 KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 429
VPY S LT++L DSLG ++T +I I P + N+ ETLS+L ++ RA++
Sbjct: 306 TPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 143 bits (360), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 112/353 (31%), Positives = 175/353 (49%), Gaps = 39/353 (11%)
Query: 110 KTRKLGNIKVFCRTRPLFEDEGPSVVEFTDDC-----TIRVNTGDDTISNPKKDFEFDRV 164
K K NI+V R RP E + +C + V TG + +K + FD V
Sbjct: 11 KEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMV 70
Query: 165 YGPHVGQAELF-SDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDR--------- 214
+G Q +++ S V P + + GYN +IFAYGQT +GKT TMEG
Sbjct: 71 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDP 130
Query: 215 --GLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL 271
G+ R ++F+ L+++ T F+ V++ E+YNE+L +LL + + RLQ
Sbjct: 131 LAGIIPRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMF 184
Query: 272 ESS-------IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYY 319
+ I+ ++E V N E ++L+ R + N SH + + I+
Sbjct: 185 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 244
Query: 320 N-NLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR 376
I GE L KL+LVDLAGSE + +R + ++ +SL LG V+++L R
Sbjct: 245 KETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER 304
Query: 377 KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 429
VPY S LT++L DSLG ++T +I I P + N+ ETLS+L ++ RA++
Sbjct: 305 TPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 357
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 143 bits (360), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 112/353 (31%), Positives = 175/353 (49%), Gaps = 39/353 (11%)
Query: 110 KTRKLGNIKVFCRTRPLFEDEGPSVVEFTDDC-----TIRVNTGDDTISNPKKDFEFDRV 164
K K NI+V R RP E + +C + V TG + +K + FD V
Sbjct: 3 KEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMV 62
Query: 165 YGPHVGQAELF-SDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDR--------- 214
+G Q +++ S V P + + GYN +IFAYGQT +GKT TMEG
Sbjct: 63 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDP 122
Query: 215 --GLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL 271
G+ R ++F+ L+++ T F+ V++ E+YNE+L +LL + + RLQ
Sbjct: 123 LAGIIPRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMF 176
Query: 272 ESS-------IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYY 319
+ I+ ++E V N E ++L+ R + N SH + + I+
Sbjct: 177 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 236
Query: 320 N-NLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR 376
I GE L KL+LVDLAGSE + +R + ++ +SL LG V+++L R
Sbjct: 237 KETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER 296
Query: 377 KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 429
VPY S LT++L DSLG ++T +I I P + N+ ETLS+L ++ RA++
Sbjct: 297 TPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 349
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 142 bits (359), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 112/353 (31%), Positives = 175/353 (49%), Gaps = 39/353 (11%)
Query: 110 KTRKLGNIKVFCRTRPLFEDEGPSVVEFTDDC-----TIRVNTGDDTISNPKKDFEFDRV 164
K K NI+V R RP E + +C + V TG + +K + FD V
Sbjct: 14 KEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMV 73
Query: 165 YGPHVGQAELF-SDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDR--------- 214
+G Q +++ S V P + + GYN +IFAYGQT +GKT TMEG
Sbjct: 74 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDP 133
Query: 215 --GLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL 271
G+ R ++F+ L+++ T F+ V++ E+YNE+L +LL + + RLQ
Sbjct: 134 LAGIIPRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMF 187
Query: 272 ESS-------IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYY 319
+ I+ ++E V N E ++L+ R + N SH + + I+
Sbjct: 188 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 247
Query: 320 N-NLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR 376
I GE L KL+LVDLAGSE + +R + ++ +SL LG V+++L R
Sbjct: 248 KETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER 307
Query: 377 KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 429
VPY S LT++L DSLG ++T +I I P + N+ ETLS+L ++ RA++
Sbjct: 308 TPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 360
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 115/354 (32%), Positives = 178/354 (50%), Gaps = 41/354 (11%)
Query: 110 KTRKLGNIKVFCRTRPLFEDE----GPSVVEFTDDC--TIRVNTGDDTISNPKKDFEFDR 163
K K NI+V R RP E S+VE +D + V TG + +K + FD
Sbjct: 12 KEEKGKNIQVVVRVRPFNLAERKASAHSIVE-SDPVRKEVSVRTGGLADKSSRKTYTFDM 70
Query: 164 VYGPHVGQAELF-SDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDR-------- 214
V+G Q +++ S V P + + GYN +IFAYGQT +GKT TMEG
Sbjct: 71 VFGASTKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEED 130
Query: 215 ---GLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQS 270
G+ R ++F+ L+++ T F+ V++ E+YNE+L +LL + + RLQ
Sbjct: 131 PLAGIIPRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQM 184
Query: 271 LESS-------IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIY 318
+ I+ ++E V N E ++L+ R + N SH + + I+
Sbjct: 185 FDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH 244
Query: 319 YN-NLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS 375
I GE L KL+LVDLAGSE + +R + ++ +SL LG V+++L
Sbjct: 245 MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE 304
Query: 376 RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 429
R VPY S LT++L DSLG ++T +I I P + N+ ETLS+L ++ RA++
Sbjct: 305 RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/347 (31%), Positives = 173/347 (49%), Gaps = 39/347 (11%)
Query: 116 NIKVFCRTRPLFEDEGPSVVEFTDDC-----TIRVNTGDDTISNPKKDFEFDRVYGPHVG 170
NI+V R RP E + +C + V TG + +K + FD V+G
Sbjct: 3 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 62
Query: 171 QAELF-SDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDR-----------GLYA 218
Q +++ S V P + + GYN +IFAYGQT +GKT TMEG G+
Sbjct: 63 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 122
Query: 219 RCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESS--- 274
R ++F+ L+++ T F+ V++ E+YNE+L +LL + + RLQ +
Sbjct: 123 RTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDDPRNK 176
Query: 275 ----IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN-NLIT 324
I+ ++E V N E ++L+ R + N SH + + I+ I
Sbjct: 177 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 236
Query: 325 GENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPY 382
GE L KL+LVDLAGSE + +R + ++ +SL LG V+++L R VPY
Sbjct: 237 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 296
Query: 383 ENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 429
S LT++L DSLG ++T +I I P + N+ ETLS+L ++ RA++
Sbjct: 297 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 343
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 140 bits (353), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 108/354 (30%), Positives = 174/354 (49%), Gaps = 49/354 (13%)
Query: 117 IKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPK------KDFEFDRVYGPHVG 170
+KV R RP E + C I+++ TI NPK K F FD Y H
Sbjct: 22 VKVAVRVRPFNSRE----MSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTS 77
Query: 171 --------QAELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSH--DRGLYAR 219
Q +++ D+ + +Q A +GYNV IFAYGQT +GK++TM G +G+ +
Sbjct: 78 PEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQ 137
Query: 220 CFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSI--EL 277
E+LF N T ++ V+ E+Y E++R+LL G ++R L +L
Sbjct: 138 LCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDL 197
Query: 278 VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNL-----------ITGE 326
+ V + + ++ S ++R V+ N++ H +N + IT E
Sbjct: 198 SKLAVTSYNDIQDLMDSGNKAR--TVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE 255
Query: 327 NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT------------ 374
+ SK+SLVDLAGSE + G R+ + ++ KSL+ LG V+S+L
Sbjct: 256 KV-SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKK 314
Query: 375 SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 428
+ D +PY +S+LT +L ++LG +S+T M+ + P N ETLS+L ++ RA+
Sbjct: 315 KKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 368
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 139 bits (351), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 108/354 (30%), Positives = 174/354 (49%), Gaps = 49/354 (13%)
Query: 117 IKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPK------KDFEFDRVYGPHVG 170
+KV R RP E + C I+++ TI NPK K F FD Y H
Sbjct: 6 VKVAVRVRPFNSRE----MSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTS 61
Query: 171 --------QAELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSH--DRGLYAR 219
Q +++ D+ + +Q A +GYNV IFAYGQT +GK++TM G +G+ +
Sbjct: 62 PEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQ 121
Query: 220 CFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSI--EL 277
E+LF N T ++ V+ E+Y E++R+LL G ++R L +L
Sbjct: 122 LCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDL 181
Query: 278 VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNL-----------ITGE 326
+ V + + ++ S ++R V+ N++ H +N + IT E
Sbjct: 182 SKLAVTSYNDIQDLMDSGNKAR--TVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE 239
Query: 327 NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT------------ 374
+ SK+SLVDLAGSE + G R+ + ++ KSL+ LG V+S+L
Sbjct: 240 KV-SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKK 298
Query: 375 SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 428
+ D +PY +S+LT +L ++LG +S+T M+ + P N ETLS+L ++ RA+
Sbjct: 299 KKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 352
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 139 bits (350), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 108/353 (30%), Positives = 172/353 (48%), Gaps = 47/353 (13%)
Query: 117 IKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPK------KDFEFDRVYGPHVG 170
+KV R RP E + C I+++ TI NPK K F FD Y H
Sbjct: 6 VKVAVRVRPFNSRE----MSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTS 61
Query: 171 --------QAELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSH--DRGLYAR 219
Q +++ D+ + +Q A +GYNV IFAYGQT +GK++TM G +G+ +
Sbjct: 62 PEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQ 121
Query: 220 CFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSI--EL 277
E+LF N T ++ V+ E+Y E++R+LL G ++R L +L
Sbjct: 122 LCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDL 181
Query: 278 VQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMI------HIYYNNLITGEN 327
+ V + + ++ S ++R + N SH + I H N+ T +
Sbjct: 182 SKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEK- 240
Query: 328 LYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT------------S 375
SK+SLVDLAGSE + G R+ + ++ KSL+ LG V+S+L
Sbjct: 241 -VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKK 299
Query: 376 RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 428
+ D +PY +S+LT +L ++LG +S+T M+ + P N ETLS+L ++ RA+
Sbjct: 300 KTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 352
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/353 (30%), Positives = 171/353 (48%), Gaps = 47/353 (13%)
Query: 117 IKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPK------KDFEFDRVYGPHVG 170
+KV R RP E + C I+++ TI NPK K F FD Y H
Sbjct: 6 VKVAVRVRPFNSRE----MSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTS 61
Query: 171 --------QAELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSH--DRGLYAR 219
Q +++ D+ + +Q A +GYNV IFAYGQT +GK++TM G +G+ +
Sbjct: 62 PEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQ 121
Query: 220 CFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSI--EL 277
E+LF N T ++ V+ E+Y E++R+LL G ++R L +L
Sbjct: 122 LCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDL 181
Query: 278 VQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMI------HIYYNNLITGEN 327
+ V + + ++ S + R + N SH + I H N+ T +
Sbjct: 182 SKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEK- 240
Query: 328 LYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT------------S 375
SK+SLVDLAGSE + G R+ + ++ KSL+ LG V+S+L
Sbjct: 241 -VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKK 299
Query: 376 RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 428
+ D +PY +S+LT +L ++LG +S+T M+ + P N ETLS+L ++ RA+
Sbjct: 300 KTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 352
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/365 (29%), Positives = 187/365 (51%), Gaps = 63/365 (17%)
Query: 117 IKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPK-------KDFEFDRVYGPHV 169
+KV R RPL E + E T+ V G T+ NP+ K F FD VY
Sbjct: 23 LKVVARCRPLSRKEEAAGHE--QILTMDVKLGQVTLRNPRAAPGELPKTFTFDAVYDASS 80
Query: 170 GQAELFSD-VQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHD---RGLYARCFEELF 225
QA+L+ + V+P + S L G+N ++FAYGQT +GKT+TM+G+ + RG+ FE +F
Sbjct: 81 KQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPNAFEHIF 140
Query: 226 DLSNSDTTATARFNFAVTVFELYNEQLRELL-------------PQTGNGLAKIRLQSLE 272
++ + ++ + E+Y E++R+LL P+TG + ++ L
Sbjct: 141 --THISRSQNQQYLVRASYLEIYQEEIRDLLSKEPGKRLELKENPETG-----VYIKDLS 193
Query: 273 SSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLIT-GEN--LY 329
S + +++++ + ++ + N+VS + SH I +I + + + G++
Sbjct: 194 SFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVS--SRSHAIFIITVECSERGSDGQDHIRV 251
Query: 330 SKLSLVDLAGSE--GLIAEDDSG----------------------ERITDVLHVMKSLSA 365
KL+LVDLAGSE + +G ER + + SLSA
Sbjct: 252 GKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSA 311
Query: 366 LGDVLSSLT-SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFS 424
LG+V+++L +R +PY +S LT++L DSLG ++KT+M+ + P + + E+LS+L F+
Sbjct: 312 LGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFA 371
Query: 425 SRARS 429
+RA++
Sbjct: 372 NRAKN 376
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 176/341 (51%), Gaps = 38/341 (11%)
Query: 117 IKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPK-KDFEFDRVYGPHVGQAELF 175
++V R RPL E ++ C ++V G ++ + + F F V GQ ++
Sbjct: 13 VRVALRVRPLLPKE---LLHGHQSC-LQVEPGLGRVTLGRDRHFGFHVVLAEDAGQEAVY 68
Query: 176 -SDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSS------HDRGLYARCFEELFDLS 228
+ VQP +++ +G+N ++FAYGQT SGKT+TM +S ++G+ R E F L
Sbjct: 69 QACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLI 128
Query: 229 NSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLE-SSIELVQEK---VDN 284
+ + + V+ E+Y E+ R+LL + G I+L+ E ++ L K V+
Sbjct: 129 DENDLLDCLVH--VSYLEVYKEEFRDLL-EVGTASRDIQLREDERGNVVLCGVKEVDVEG 185
Query: 285 PLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLI--------------TGENLYS 330
E +L+ +R + N HL H + + G+ L S
Sbjct: 186 LDEVLSLLEMGNAARHTGATHLN--HLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVS 243
Query: 331 KLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS---RKDIVPYENSML 387
K VDLAGSE ++ +GER+ + + + SL ALG+V+S+L R +PY +S +
Sbjct: 244 KFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKI 303
Query: 388 TKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 428
T++L DSLG ++KT+MI + P++++ ETL++LN++SRA+
Sbjct: 304 TRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 134 bits (336), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 94/328 (28%), Positives = 164/328 (50%), Gaps = 15/328 (4%)
Query: 117 IKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQA 172
++V R RP + P V D C++ + + K ++FD YG Q
Sbjct: 23 VRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLK--YQFDAFYGERSTQQ 80
Query: 173 ELFS-DVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSD 231
++++ VQP ++ L+G N S+ AYG T +GKTHTM GS G+ R +L L+ +
Sbjct: 81 DIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREE 140
Query: 232 TTATARFNFAVTV--FELYNEQLRELL-PQTGNGLAKIRLQSLESSIELVQEKVDNPLEF 288
+ +VT+ E+Y E++ +LL P +G+ + + + L Q+ + + +F
Sbjct: 141 GAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIPGLSQKPISSFADF 200
Query: 289 SKVLKSAFQSRGNDVSKFNV----SHLIIMIHI-YYNNLITGENLYSKLSLVDLAGSEGL 343
+ A ++R ++ N SH ++++ + L KL L+DLAGSE
Sbjct: 201 ERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDLAGSEDN 260
Query: 344 IAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLM 403
+ G R+ + + SL LG V+ +L VPY +S LT++L DSLG S+ +++
Sbjct: 261 RRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSIL 320
Query: 404 IVNICPNAANMSETLSSLNFSSRARSTV 431
I NI P +T+S+LNF++R++ +
Sbjct: 321 IANIAPERRFYLDTVSALNFAARSKEVI 348
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 159/319 (49%), Gaps = 48/319 (15%)
Query: 156 KKDFEFDRVYGPHVGQAELFSDVQ--------PFVQSALDGYNVSIFAYGQTHSGKTHTM 207
+K F FD+ + H + E ++ + F+ +GY+ IFAYGQT SGK++TM
Sbjct: 95 EKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTM 154
Query: 208 EGSSHDRGLYARCFEELFD--LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAK 265
G+ GL R E+LF S D T +N V+ FE+YNE +R+LL
Sbjct: 155 MGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPP 214
Query: 266 IRLQSLESSIE--LVQEKVDNPL----EFSKVLKSAFQSRG------NDVSKFNVSHLII 313
L+ ES E V++ + P+ E + ++ SR ND S + + I
Sbjct: 215 YYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTI 274
Query: 314 MIHIYYNNLITGENL--YSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLS 371
M+ +++L T + S++ LVDLAGSE + + +G+R+ + ++ KSL+ LG V++
Sbjct: 275 MLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIA 334
Query: 372 SLTSRK----------------------DIVPYENSMLTKVLADSLGESSKTLMIVNICP 409
+L K +VPY +S+LT +L DSLG +SKT MI I P
Sbjct: 335 ALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISP 394
Query: 410 NAANMSETLSSLNFSSRAR 428
+ ETLS+L ++ +A+
Sbjct: 395 T--DYDETLSTLRYADQAK 411
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 129 bits (324), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 174/341 (51%), Gaps = 38/341 (11%)
Query: 117 IKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPK-KDFEFDRVYGPHVGQAELF 175
++V R RPL E ++ C ++V G ++ + + F F V GQ ++
Sbjct: 13 VRVALRVRPLLPKE---LLHGHQSC-LQVEPGLGRVTLGRDRHFGFHVVLAEDAGQEAVY 68
Query: 176 -SDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSS------HDRGLYARCFEELFDLS 228
+ VQP +++ +G+N ++FAYGQT SGKT+TM +S ++G+ R E F L
Sbjct: 69 QACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLI 128
Query: 229 NSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLE-SSIELVQEK---VDN 284
+ + + V+ E+Y E+ R+LL + G I+L+ E ++ L K V+
Sbjct: 129 DENDLLDCLVH--VSYLEVYKEEFRDLL-EVGTASRDIQLREDERGNVVLCGVKEVDVEG 185
Query: 285 PLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLI--------------TGENLYS 330
E +L+ +R + N HL H + + G+ L S
Sbjct: 186 LDEVLSLLEMGNAARHTGATHLN--HLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLLVS 243
Query: 331 KLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS---RKDIVPYENSML 387
K VDLAGSE ++ +GE + + + SL ALG+V+S+L R +PY +S +
Sbjct: 244 KFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIPYRDSKI 303
Query: 388 TKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 428
T++L DSLG ++KT+MI + P++++ ETL++LN++SRA+
Sbjct: 304 TRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 126 bits (316), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 155/303 (51%), Gaps = 30/303 (9%)
Query: 147 TGDDTISNPKKD--FEFDRVYGPHVGQAELFSDV-QPFVQSALDGYNVSIFAYGQTHSGK 203
T + I KD F FD V+ Q+E+F +P ++S L+GYN ++ AYG T +GK
Sbjct: 60 TNQNVIKKQNKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGK 119
Query: 204 THTMEGSSHDRG--------LYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLREL 255
THTM GS+ + G LY +C +E+ + T AV+ E+YNEQ+R+L
Sbjct: 120 THTMLGSADEPGVMYLTMLHLY-KCMDEIKEEKICST--------AVSYLEVYNEQIRDL 170
Query: 256 LPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHL 311
L +G + Q L + + E +L + ++R + N SH
Sbjct: 171 LVNSGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHA 230
Query: 312 IIMIHIYYNNLITGENL---YSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGD 368
+ I++ + N +K+SL+DLAGSE G R + ++ +SL ALG+
Sbjct: 231 VFQIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGN 290
Query: 369 VLSSLTSRK---DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSS 425
V+++L K +PY NS LT++L DSLG + +T+MI + P++ +T ++L +++
Sbjct: 291 VINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYAN 350
Query: 426 RAR 428
RA+
Sbjct: 351 RAK 353
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/341 (29%), Positives = 162/341 (47%), Gaps = 28/341 (8%)
Query: 111 TRKLGNIKVFCRTRPLFEDEGPSVVEFTDDC-TIRVNTGDD----TISNPKKDFEFDRVY 165
TRK + F R +P +D ++ + DD +I ++ D ++N + D+ F
Sbjct: 22 TRK--KVHAFVRVKPT-DDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDG 78
Query: 166 GPHVGQAELFSDV--QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHD---RGLYARC 220
H +L + + V ALDGYN +I YGQT +GKT+TM G++ + RG+ R
Sbjct: 79 VLHDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRA 138
Query: 221 FEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL---PQTGNGLAKIRLQSLESSIEL 277
+++F + + T V+ E+YNE L +LL P G + + + + +
Sbjct: 139 LQQVFRMI--EERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQGVFI 196
Query: 278 VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV-------SHLIIMIHIYYNNLITGENLY- 329
V + F+ N + + SH I I++ ++ E Y
Sbjct: 197 KGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYI 256
Query: 330 -SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK-DIVPYENSML 387
SK++LVDLAGSE L G+ + + ++ KSLS L + +L +K D +P+ L
Sbjct: 257 TSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKL 316
Query: 388 TKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 428
T L DSLG + +++ NI AA + ETLSSL F+SR +
Sbjct: 317 THALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMK 357
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 102/334 (30%), Positives = 156/334 (46%), Gaps = 31/334 (9%)
Query: 115 GNIKVFCRTRPLFE-----DEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHV 169
G + V R RPL E V TD+ I G K F FDRV+ +
Sbjct: 4 GAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGS-------KSFNFDRVFHGNE 56
Query: 170 GQAELFSDVQ-PFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLS 228
++ ++ P + SA+ GYN +IFAYGQT SGKT+TM GS G+ R ++F
Sbjct: 57 TTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQ-- 114
Query: 229 NSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSI---ELVQEKVDNP 285
F V+ E+YNE + +LL T I + + ++ +L +E V
Sbjct: 115 KIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTS 174
Query: 286 LEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN-----NLITGENLYSKLSLVD 336
K + +SR +K N SH I + + + G S L+LVD
Sbjct: 175 EMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVD 234
Query: 337 LAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK--DIVPYENSMLTKVLADS 394
LAGSE +G R+ + ++ +SL LG V+ L+ + + Y +S LT++L +S
Sbjct: 235 LAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNS 294
Query: 395 LGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 428
LG ++KT +I I P + ETL++L F+S A+
Sbjct: 295 LGGNAKTRIICTITP--VSFDETLTALQFASTAK 326
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 142/289 (49%), Gaps = 32/289 (11%)
Query: 158 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG------SS 211
DF FD V F+ +P VQ+ +G + FAYGQT SGKTHTM G +
Sbjct: 126 DFAFDETASNEV--VYRFT-ARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQN 182
Query: 212 HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL 271
+G+YA ++F L N VT FE+YN ++ +LL N AK+R+ L
Sbjct: 183 ASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLL----NKKAKLRV--L 236
Query: 272 ESSIELVQ---------EKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNL 322
E S + VQ D+ ++ + SA ++ G + N S I L
Sbjct: 237 EDSRQQVQVVGLQEYLVTCADDVIKMIN-MGSACRTSGQTFANSNSSRSHACFQIL---L 292
Query: 323 ITGENLYSKLSLVDLAGSEGLIAEDDSGERITDV--LHVMKSLSALGDVLSSLTSRKDIV 380
T L+ K SLVDLAG+E A+ S +R T + + KSL AL + + +L K
Sbjct: 293 RTKGRLHGKFSLVDLAGNE-RGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHT 351
Query: 381 PYENSMLTKVLADS-LGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 428
P+ S LT+VL DS +GE+S+T MI I P ++ TL++L ++ R +
Sbjct: 352 PFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 400
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 147/289 (50%), Gaps = 32/289 (11%)
Query: 158 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG------SS 211
DF FD V F+ +P VQ+ +G + FAYGQT SGKTHTM G +
Sbjct: 106 DFAFDETASNEV--VYRFT-ARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQN 162
Query: 212 HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIR-LQS 270
+G+YA ++F L N VT FE+YN +L +LL N AK+R L+
Sbjct: 163 ASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLL----NKKAKLRVLED 218
Query: 271 LESSIELV--QEKVDNPLEFSKVLK-----SAFQSRGNDVSKFNVSHLIIMIHIYYNNLI 323
+ +++V QE + N + V+K SA ++ G + N S H + ++
Sbjct: 219 GKQQVQVVGLQEHLVNSAD--DVIKMIDMGSACRTSGQTFANSNSSR----SHACFQIIL 272
Query: 324 TGEN-LYSKLSLVDLAGSEGLIAEDDSGERITDV--LHVMKSLSALGDVLSSLTSRKDIV 380
+ ++ K SLVDLAG+E A+ S +R T + + KSL AL + + +L K
Sbjct: 273 RAKGRMHGKFSLVDLAGNE-RGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHT 331
Query: 381 PYENSMLTKVLADS-LGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 428
P+ S LT+VL DS +GE+S+T MI I P ++ TL++L ++ R +
Sbjct: 332 PFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVK 380
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 110 bits (275), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 125/242 (51%), Gaps = 28/242 (11%)
Query: 116 NIKVFCRTRPLFEDE---GPSVV-EFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQ 171
+IKV CR RPL E E G + +F + T+ + G K + FDRV P+ Q
Sbjct: 7 SIKVMCRFRPLNEAEILRGDKFIPKFKGEETVVIGQG--------KPYVFDRVLPPNTTQ 58
Query: 172 AELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHD---RGLYARCFEELFDL 227
++++ + V+ L+GYN +IFAYGQT SGKTHTMEG HD G+ R ++FD
Sbjct: 59 EQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDH 118
Query: 228 SNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLA----KIRLQSLESSIELVQEKVD 283
S F+ V+ FE+Y +++R+LL + LA K R+ ++ E V
Sbjct: 119 IYS-MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERF---VS 174
Query: 284 NPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYNNLITGENLYSKLSLVDLAG 339
+P E V+ +R V+ N SH I +I+I N+ T + L KL LVDLAG
Sbjct: 175 SPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAG 234
Query: 340 SE 341
SE
Sbjct: 235 SE 236
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 109 bits (273), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 142/290 (48%), Gaps = 34/290 (11%)
Query: 158 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG------SS 211
DF FD V F+ +P VQ+ +G + FAYGQT SGKTHTM G +
Sbjct: 54 DFAFDETASNEV--VYRFT-ARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQN 110
Query: 212 HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL 271
+G+YA ++F L N VT FE+YN ++ +LL + K +L+ L
Sbjct: 111 ASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNK------KAKLRVL 164
Query: 272 ESSIELVQ---------EKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNL 322
E S + VQ D+ ++ + SA ++ G + N S I L
Sbjct: 165 EDSRQQVQVVGLQEYLVTCADDVIKMIN-MGSACRTSGQTFANSNSSRSHACFQIL---L 220
Query: 323 ITGENLYSKLSLVDLAGSE-GLIAEDDSGERITDV--LHVMKSLSALGDVLSSLTSRKDI 379
T L+ K SLVDLAG+E G A+ S +R T + + KSL AL + + +L K
Sbjct: 221 RTKGRLHGKFSLVDLAGNERG--ADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAH 278
Query: 380 VPYENSMLTKVLADS-LGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 428
P+ S LT+VL DS +GE+S+T MI I P ++ TL++L ++ R +
Sbjct: 279 TPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 328
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 168/340 (49%), Gaps = 38/340 (11%)
Query: 117 IKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTG----DDTISNPKKDFEFDRVYGPH 168
IKV R RPL E E ++ ++CT+ ++ D T + +F D+V+
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT 61
Query: 169 VGQAELFSD-VQPFVQSAL-DGYNVSIFAYGQTHSGKTHTMEGS-----SHDRGLYARCF 221
V ++ + ++P + +G S FAYGQT SGKT+TM GS S G++
Sbjct: 62 VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAA 121
Query: 222 EELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG------NGLAKIRLQSLE--- 272
++F N + F ++ +E+Y +L +LL + NG ++ ++ L+
Sbjct: 122 GDIFTFLNIYDKDNTKGIF-ISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDLKILR 180
Query: 273 --SSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYS 330
+ EL+ + +D L + K S+ ++ S+ SH I+ I + I
Sbjct: 181 VLTKEELILKMIDGVL----LRKIGVNSQNDESSR---SHAILNIDL---KDINKNTSLG 230
Query: 331 KLSLVDLAGSE-GLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTK 389
K++ +DLAGSE G + + TD ++ +SL AL + + ++ S K+ +P+ +S LTK
Sbjct: 231 KIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTK 290
Query: 390 VLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 429
VL D SK++MI NI P + +TL++L +SSR ++
Sbjct: 291 VLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKN 330
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 155/338 (45%), Gaps = 38/338 (11%)
Query: 113 KLGNIKVFCRTRPLFEDEG---PSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHV 169
KL +++ R P + G PSVV+F + G I + + +F FD + +
Sbjct: 20 KLSAVRIAVREAPYRQFLGRREPSVVQFPP-----WSDGKSLIVD-QNEFHFDHAFPATI 73
Query: 170 GQAELFSD-VQPFVQSALDGYNVSIFAYGQTHSGKTHTM------EGSSHDRGLYARCFE 222
Q E++ + P V L+G+ + AYGQT +GK+++M E G+ R
Sbjct: 74 SQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALG 133
Query: 223 ELFDLSNSDTTATAR-------FNFAVTVFELYNEQLRELLPQTGN-GLAKIRLQSLESS 274
++F+ TAR + E+YNE+ +LL T + + R Q
Sbjct: 134 DIFE------RVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQRCTCL 187
Query: 275 IELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSL 334
Q + + LE + + N S + SH I+ IH+ + +S++++
Sbjct: 188 PLHSQADLHHILELGTRNRRVRPTNMN--SNSSRSHAIVTIHV------KSKTHHSRMNI 239
Query: 335 VDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADS 394
VDLAGSEG+ G + +++ L ++ V+ S+ + ++PY +S+LT VL S
Sbjct: 240 VDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQAS 299
Query: 395 LGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 432
L S + I P+ ++SETLS+L F + A++ L
Sbjct: 300 LTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKAAAL 337
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 139/292 (47%), Gaps = 36/292 (12%)
Query: 159 FEFDRVYGPHVGQAELFS-DVQPFVQSALDGYNVSIFAYGQTHSGKTHTM----EGSSHD 213
F FD + ++ +P V++ + + FAYGQT SGKTHTM G + D
Sbjct: 141 FRFDYAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQD 200
Query: 214 --RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL 271
+G+YA ++F + T FE+Y+ ++ +LL + K +L+ L
Sbjct: 201 CSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNR------KTKLRVL 254
Query: 272 ESSIELVQ------------EKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYY 319
E + VQ E V ++ +++ Q+ N S + SH + I +
Sbjct: 255 EDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHS--SRSHAVFQIILRR 312
Query: 320 NNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDV--LHVMKSLSALGDVLSSLTSRK 377
L+ K SL+DLAG+E A+ S +R T + + KSL AL + + +L K
Sbjct: 313 KG-----KLHGKFSLIDLAGNE-RGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK 366
Query: 378 DIVPYENSMLTKVLADS-LGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 428
P+ S LT+VL DS +GE+S+T MI I P A+ TL++L +++R +
Sbjct: 367 PHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVK 418
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 153/334 (45%), Gaps = 38/334 (11%)
Query: 113 KLGNIKVFCRTRPLFEDEG---PSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHV 169
KL +++ R P + G PSVV+F + G I + + +F FD + +
Sbjct: 20 KLSAVRIAVREAPYRQFLGRREPSVVQFPP-----WSDGKSLIVD-QNEFHFDHAFPATI 73
Query: 170 GQAELFSD-VQPFVQSALDGYNVSIFAYGQTHSGKTHTM------EGSSHDRGLYARCFE 222
Q E++ + P V L+G+ + AYGQT +GK+++M E G+ R
Sbjct: 74 SQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALG 133
Query: 223 ELFDLSNSDTTATAR-------FNFAVTVFELYNEQLRELLPQTGN-GLAKIRLQSLESS 274
++F+ TAR + E+YNE+ +LL T + + R Q
Sbjct: 134 DIFE------RVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQRCTCL 187
Query: 275 IELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSL 334
Q + + LE + + N S + SH I+ IH+ + +S++++
Sbjct: 188 PLHSQADLHHILELGTRNRRVRPTNMN--SNSSRSHAIVTIHV------KSKTHHSRMNI 239
Query: 335 VDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADS 394
VDLAGSEG+ G + +++ L ++ V+ S+ + ++PY +S+LT VL S
Sbjct: 240 VDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQAS 299
Query: 395 LGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 428
L S + I P+ ++SETLS+L F + A+
Sbjct: 300 LTAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 361 KSLSALGDVLSSLT-SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLS 419
KSLSALG+V+S+L K VPY +S +T++L DSLG + +T +++ P+ N +ET S
Sbjct: 2 KSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKS 61
Query: 420 SLNFSSRARS 429
+L F RA++
Sbjct: 62 TLMFGQRAKT 71
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 358 HVMKSLSALGDVLSSLT-SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSE 416
++ KSLSALG+V+S+L K VPY +S +T++L DSL + +T +++ P+ N +E
Sbjct: 3 NINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAE 62
Query: 417 TLSSLNFSSRARS 429
T S+L F RA++
Sbjct: 63 TKSTLMFGQRAKT 75
>pdb|2P2U|A Chain A, Crystal Structure Of Putative Host-Nuclease Inhibitor
Protein Gam From Desulfovibrio Vulgaris
pdb|2P2U|B Chain B, Crystal Structure Of Putative Host-Nuclease Inhibitor
Protein Gam From Desulfovibrio Vulgaris
Length = 171
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 549 IKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEEL 608
I T+ K+ IE+Q NEA+ +++ R++ +S P+ A L DG+ + A K E
Sbjct: 25 IATIDRKVGEIEAQXNEAIDAAKARASQKSAPLLARRKELE---DGVATFATLNKT-EXF 80
Query: 609 KKRDAL 614
K R +L
Sbjct: 81 KDRKSL 86
>pdb|1MY6|A Chain A, The 1.6 A Structure Of Fe-superoxide Dismutase From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus : Correlation Of Epr And Structural
Characteristics
pdb|1MY6|B Chain B, The 1.6 A Structure Of Fe-superoxide Dismutase From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus : Correlation Of Epr And Structural
Characteristics
Length = 199
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 180 PFVQSALDGYNVSI----FAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTAT 235
PF AL+ Y +S F YG+ H G + + D L + E++ + D
Sbjct: 8 PFDPGALEPYGMSAKTLEFHYGKHHKGYVDNLNKLTQDTELADKSLEDVIRTTYGDAAKV 67
Query: 236 ARFNFAVTVF 245
FN A V+
Sbjct: 68 GIFNNAAQVW 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,189,857
Number of Sequences: 62578
Number of extensions: 1119827
Number of successful extensions: 2898
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 2658
Number of HSP's gapped (non-prelim): 106
length of query: 1162
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1053
effective length of database: 8,152,335
effective search space: 8584408755
effective search space used: 8584408755
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)