Query 001081
Match_columns 1162
No_of_seqs 449 out of 2286
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 15:18:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001081.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001081hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0243 Kinesin-like protein [ 100.0 2.3E-79 5.1E-84 740.6 46.0 349 114-481 48-426 (1041)
2 KOG0245 Kinesin-like protein [ 100.0 1.2E-77 2.5E-82 713.1 26.4 345 114-478 3-380 (1221)
3 KOG4280 Kinesin-like protein [ 100.0 1.7E-77 3.8E-82 700.2 26.3 346 115-477 5-367 (574)
4 KOG0240 Kinesin (SMY1 subfamil 100.0 2.6E-75 5.6E-80 667.3 38.9 353 113-472 5-372 (607)
5 KOG0239 Kinesin (KAR3 subfamil 100.0 3.7E-75 8E-80 699.1 31.7 320 115-435 314-645 (670)
6 cd01370 KISc_KIP3_like Kinesin 100.0 8.1E-73 1.7E-77 637.2 31.8 313 116-430 1-338 (338)
7 PLN03188 kinesin-12 family pro 100.0 1.8E-72 4E-77 685.7 34.6 342 114-475 97-469 (1320)
8 cd01373 KISc_KLP2_like Kinesin 100.0 8E-72 1.7E-76 628.9 32.0 309 115-430 1-337 (337)
9 cd01368 KISc_KIF23_like Kinesi 100.0 7E-71 1.5E-75 623.1 32.4 307 115-428 1-345 (345)
10 KOG0242 Kinesin-like protein [ 100.0 2.8E-71 6E-76 667.5 29.6 349 115-475 6-368 (675)
11 KOG0241 Kinesin-like protein [ 100.0 1.7E-70 3.6E-75 639.8 28.5 393 115-531 4-430 (1714)
12 cd01367 KISc_KIF2_like Kinesin 100.0 1.5E-69 3.2E-74 606.9 31.9 306 115-428 1-322 (322)
13 cd01365 KISc_KIF1A_KIF1B Kines 100.0 4E-69 8.7E-74 610.7 33.4 319 115-434 1-353 (356)
14 cd01371 KISc_KIF3 Kinesin moto 100.0 2.3E-68 5E-73 599.6 33.8 314 115-430 1-333 (333)
15 cd01369 KISc_KHC_KIF5 Kinesin 100.0 2.2E-68 4.8E-73 597.1 33.4 309 115-430 2-325 (325)
16 cd01376 KISc_KID_like Kinesin 100.0 3.4E-68 7.4E-73 595.0 32.8 305 116-428 1-319 (319)
17 cd01374 KISc_CENP_E Kinesin mo 100.0 4.4E-68 9.4E-73 594.2 32.2 306 116-430 1-321 (321)
18 cd01366 KISc_C_terminal Kinesi 100.0 8.3E-68 1.8E-72 593.1 33.8 314 115-432 2-328 (329)
19 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.2E-67 2.5E-72 597.5 32.9 316 115-434 2-347 (352)
20 cd01375 KISc_KIF9_like Kinesin 100.0 4.9E-67 1.1E-71 589.3 31.4 310 116-428 1-334 (334)
21 cd01372 KISc_KIF4 Kinesin moto 100.0 1E-66 2.2E-71 586.9 32.0 307 116-431 2-341 (341)
22 cd00106 KISc Kinesin motor dom 100.0 6.5E-65 1.4E-69 568.0 33.8 312 116-428 1-328 (328)
23 KOG0247 Kinesin-like protein [ 100.0 8.5E-65 1.8E-69 592.0 34.5 318 115-432 31-438 (809)
24 smart00129 KISc Kinesin motor, 100.0 1.9E-63 4.1E-68 558.5 32.7 315 116-434 1-332 (335)
25 PF00225 Kinesin: Kinesin moto 100.0 2.3E-63 4.9E-68 557.0 24.5 309 122-430 1-335 (335)
26 KOG0246 Kinesin-like protein [ 100.0 8.6E-60 1.9E-64 537.9 26.9 314 115-433 208-544 (676)
27 KOG0244 Kinesin-like protein [ 100.0 8.2E-60 1.8E-64 563.8 12.3 341 123-474 1-371 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 6.6E-55 1.4E-59 520.1 36.4 314 114-437 21-343 (568)
29 cd01363 Motor_domain Myosin an 100.0 2.5E-46 5.4E-51 389.2 17.4 172 174-409 8-186 (186)
30 KOG0239 Kinesin (KAR3 subfamil 100.0 6.8E-32 1.5E-36 325.9 -5.0 648 143-938 12-670 (670)
31 COG5059 KIP1 Kinesin-like prot 98.4 8E-09 1.7E-13 125.4 -6.7 283 74-374 262-566 (568)
32 COG1579 Zn-ribbon protein, pos 96.5 0.29 6.3E-06 54.5 20.5 41 597-637 151-192 (239)
33 PRK11637 AmiB activator; Provi 96.4 0.97 2.1E-05 54.0 25.5 9 792-800 378-386 (428)
34 PF07888 CALCOCO1: Calcium bin 95.8 2.2 4.8E-05 52.6 24.7 40 449-488 154-193 (546)
35 PF09726 Macoilin: Transmembra 95.8 0.58 1.3E-05 59.4 20.5 38 524-561 543-580 (697)
36 PF10481 CENP-F_N: Cenp-F N-te 95.7 1.7 3.8E-05 49.0 21.5 124 538-676 100-228 (307)
37 TIGR02169 SMC_prok_A chromosom 95.7 0.81 1.8E-05 60.2 22.4 14 194-207 27-40 (1164)
38 PF09726 Macoilin: Transmembra 95.6 1.2 2.6E-05 56.6 22.5 23 604-626 634-656 (697)
39 PRK11637 AmiB activator; Provi 95.6 2.6 5.7E-05 50.4 24.3 6 671-676 306-311 (428)
40 KOG0980 Actin-binding protein 95.5 1.5 3.2E-05 56.0 22.2 81 722-806 645-751 (980)
41 PF13851 GAS: Growth-arrest sp 95.4 2.7 5.8E-05 45.8 21.5 52 438-489 27-78 (201)
42 TIGR02169 SMC_prok_A chromosom 95.4 1.2 2.6E-05 58.7 22.6 11 284-294 118-128 (1164)
43 COG4942 Membrane-bound metallo 95.1 2.9 6.2E-05 50.2 21.7 22 658-679 285-306 (420)
44 PRK09039 hypothetical protein; 95.0 2.1 4.6E-05 50.2 20.3 84 519-622 116-199 (343)
45 KOG1853 LIS1-interacting prote 95.0 2.4 5.3E-05 47.4 19.2 31 599-629 147-180 (333)
46 PF07888 CALCOCO1: Calcium bin 94.9 7 0.00015 48.4 25.0 26 604-629 436-461 (546)
47 COG1579 Zn-ribbon protein, pos 94.9 8.4 0.00018 43.3 23.8 35 597-631 140-174 (239)
48 TIGR02168 SMC_prok_B chromosom 94.9 2.8 6E-05 55.2 23.4 10 704-713 977-986 (1179)
49 TIGR02168 SMC_prok_B chromosom 94.8 2.3 4.9E-05 55.9 22.4 7 835-841 1072-1078(1179)
50 PF09755 DUF2046: Uncharacteri 94.7 4.4 9.5E-05 46.9 21.3 95 521-632 108-204 (310)
51 KOG0250 DNA repair protein RAD 94.6 3.2 7E-05 54.3 22.0 20 188-208 61-80 (1074)
52 KOG4673 Transcription factor T 94.6 13 0.00029 46.7 26.0 28 462-489 608-635 (961)
53 PF12718 Tropomyosin_1: Tropom 94.3 4.9 0.00011 41.7 18.9 55 510-564 78-139 (143)
54 PF09789 DUF2353: Uncharacteri 94.3 3.8 8.2E-05 47.7 19.7 155 454-632 74-229 (319)
55 KOG2129 Uncharacterized conser 94.2 3.2 7E-05 49.2 18.9 65 546-619 252-316 (552)
56 PF08317 Spc7: Spc7 kinetochor 94.2 3.2 7E-05 48.1 19.3 50 517-566 214-263 (325)
57 PF10168 Nup88: Nuclear pore c 94.1 5.8 0.00013 50.9 22.8 82 534-628 633-714 (717)
58 PF05667 DUF812: Protein of un 94.1 1.8 4E-05 54.1 18.0 30 716-754 553-582 (594)
59 KOG0976 Rho/Rac1-interacting s 93.5 2.2 4.7E-05 53.8 16.8 11 904-914 688-698 (1265)
60 PF15254 CCDC14: Coiled-coil d 93.5 7.4 0.00016 49.5 21.3 30 602-631 525-554 (861)
61 KOG1029 Endocytic adaptor prot 93.5 5.3 0.00012 50.6 19.8 19 906-924 820-838 (1118)
62 KOG0996 Structural maintenance 93.5 2.1 4.6E-05 56.1 17.2 13 195-207 113-125 (1293)
63 PF12325 TMF_TATA_bd: TATA ele 93.4 3.6 7.9E-05 41.6 15.5 39 447-485 18-56 (120)
64 KOG0977 Nuclear envelope prote 93.4 7.5 0.00016 48.2 21.0 115 446-560 100-217 (546)
65 KOG0250 DNA repair protein RAD 93.4 5.5 0.00012 52.3 20.6 60 510-569 363-423 (1074)
66 COG1196 Smc Chromosome segrega 93.3 6.4 0.00014 53.1 22.2 21 745-765 985-1005(1163)
67 smart00787 Spc7 Spc7 kinetocho 93.2 5.8 0.00013 46.1 18.9 40 526-565 218-257 (312)
68 PF14662 CCDC155: Coiled-coil 93.2 6.9 0.00015 42.6 17.9 28 451-478 28-55 (193)
69 COG0556 UvrB Helicase subunit 93.2 0.13 2.9E-06 62.3 5.8 88 157-253 3-101 (663)
70 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.1 10 0.00022 38.6 18.5 33 599-631 98-130 (132)
71 PF00038 Filament: Intermediat 93.1 12 0.00026 42.7 21.2 28 600-627 263-290 (312)
72 PF00038 Filament: Intermediat 93.0 9.7 0.00021 43.4 20.3 142 411-557 164-307 (312)
73 PF05667 DUF812: Protein of un 92.9 8.9 0.00019 48.2 21.1 31 599-629 498-528 (594)
74 PF00308 Bac_DnaA: Bacterial d 92.7 0.053 1.2E-06 59.0 1.7 50 157-208 3-52 (219)
75 PHA02562 46 endonuclease subun 92.5 6 0.00013 48.5 19.1 17 191-207 28-44 (562)
76 COG1196 Smc Chromosome segrega 92.5 12 0.00026 50.6 23.1 18 187-207 24-41 (1163)
77 PHA02562 46 endonuclease subun 92.5 16 0.00035 44.9 22.5 19 719-737 466-484 (562)
78 KOG1029 Endocytic adaptor prot 92.4 16 0.00034 46.6 21.8 36 597-632 474-509 (1118)
79 PF12718 Tropomyosin_1: Tropom 92.4 14 0.0003 38.4 18.6 109 455-564 17-125 (143)
80 PF06785 UPF0242: Uncharacteri 92.1 9.5 0.00021 44.4 18.2 34 599-632 194-227 (401)
81 PF14662 CCDC155: Coiled-coil 92.0 22 0.00047 38.8 20.5 36 454-489 10-45 (193)
82 COG5185 HEC1 Protein involved 91.9 3.1 6.6E-05 50.1 14.5 88 536-630 333-420 (622)
83 PRK02224 chromosome segregatio 91.7 20 0.00044 46.6 23.3 30 603-632 603-632 (880)
84 PRK03918 chromosome segregatio 91.7 27 0.00059 45.4 24.3 15 193-207 26-40 (880)
85 KOG0996 Structural maintenance 91.6 8.1 0.00018 51.1 18.9 48 518-565 478-525 (1293)
86 PF10168 Nup88: Nuclear pore c 91.6 6.8 0.00015 50.3 18.4 29 536-564 642-670 (717)
87 KOG0971 Microtubule-associated 91.6 20 0.00043 46.5 21.6 15 702-720 599-613 (1243)
88 KOG4809 Rab6 GTPase-interactin 91.4 19 0.00041 44.4 20.5 103 452-558 331-439 (654)
89 KOG4643 Uncharacterized coiled 91.2 15 0.00032 48.1 20.2 19 1038-1056 1002-1020(1195)
90 KOG0804 Cytoplasmic Zn-finger 91.2 6 0.00013 47.6 16.0 57 508-564 392-452 (493)
91 KOG0161 Myosin class II heavy 91.1 15 0.00033 51.5 21.8 25 277-301 682-706 (1930)
92 PRK04863 mukB cell division pr 91.0 14 0.0003 51.2 21.2 18 191-208 28-45 (1486)
93 KOG0612 Rho-associated, coiled 90.9 10 0.00022 50.4 18.8 88 523-625 606-693 (1317)
94 PTZ00454 26S protease regulato 90.9 1.1 2.4E-05 53.4 10.0 51 157-207 140-196 (398)
95 KOG0971 Microtubule-associated 90.9 21 0.00046 46.3 20.9 30 540-569 518-547 (1243)
96 KOG0161 Myosin class II heavy 90.8 11 0.00024 52.8 20.1 17 1097-1113 1622-1638(1930)
97 PF10498 IFT57: Intra-flagella 90.6 13 0.00028 44.2 18.1 105 441-545 216-320 (359)
98 KOG0980 Actin-binding protein 90.6 11 0.00023 48.7 18.1 23 933-955 660-682 (980)
99 KOG1937 Uncharacterized conser 90.6 17 0.00037 43.9 18.8 85 527-632 294-378 (521)
100 PRK10884 SH3 domain-containing 90.4 3.6 7.7E-05 45.2 12.5 23 458-480 92-114 (206)
101 PF10174 Cast: RIM-binding pro 90.4 29 0.00062 45.1 22.2 119 447-565 289-410 (775)
102 TIGR01242 26Sp45 26S proteasom 90.4 1.4 3.1E-05 51.3 10.2 30 62-91 5-34 (364)
103 PF08317 Spc7: Spc7 kinetochor 90.3 13 0.00028 43.3 17.7 60 505-564 209-268 (325)
104 KOG0933 Structural maintenance 90.2 21 0.00045 46.9 20.3 21 170-190 368-388 (1174)
105 COG4372 Uncharacterized protei 90.0 49 0.0011 39.6 21.6 54 361-426 7-67 (499)
106 PRK03918 chromosome segregatio 90.0 46 0.001 43.3 24.2 8 1122-1129 866-873 (880)
107 KOG0994 Extracellular matrix g 89.9 49 0.0011 44.3 23.0 35 56-90 1225-1259(1758)
108 PRK04863 mukB cell division pr 89.9 36 0.00077 47.4 23.6 13 385-397 211-223 (1486)
109 TIGR00606 rad50 rad50. This fa 89.8 13 0.00028 50.9 19.7 26 746-771 1136-1161(1311)
110 KOG0978 E3 ubiquitin ligase in 89.8 24 0.00053 45.0 20.4 38 595-632 583-620 (698)
111 KOG4674 Uncharacterized conser 89.8 32 0.00068 48.1 22.6 115 505-628 1229-1343(1822)
112 PF11559 ADIP: Afadin- and alp 89.8 15 0.00032 37.9 15.9 51 504-557 100-150 (151)
113 TIGR00606 rad50 rad50. This fa 89.7 41 0.00088 46.3 24.2 9 704-712 1127-1135(1311)
114 KOG0977 Nuclear envelope prote 89.6 39 0.00084 42.2 21.5 118 448-565 95-215 (546)
115 PRK12377 putative replication 89.4 0.29 6.3E-06 54.7 3.4 49 160-209 72-120 (248)
116 PRK10929 putative mechanosensi 89.3 51 0.0011 44.6 23.8 44 901-944 598-647 (1109)
117 PRK02224 chromosome segregatio 89.2 48 0.001 43.3 23.5 16 192-207 25-40 (880)
118 COG2805 PilT Tfp pilus assembl 89.0 0.23 5E-06 57.0 2.2 29 179-207 114-142 (353)
119 PRK08084 DNA replication initi 89.0 0.31 6.7E-06 53.6 3.1 48 157-209 17-64 (235)
120 PF09738 DUF2051: Double stran 88.9 23 0.0005 41.2 18.0 63 503-565 103-165 (302)
121 PRK06893 DNA replication initi 88.9 0.35 7.6E-06 52.9 3.5 47 157-208 11-57 (229)
122 PRK06620 hypothetical protein; 88.8 0.28 6.2E-06 53.4 2.7 49 157-208 11-62 (214)
123 KOG2991 Splicing regulator [RN 88.8 27 0.00059 39.6 17.6 30 603-632 282-311 (330)
124 KOG0933 Structural maintenance 88.7 29 0.00063 45.7 20.0 30 599-628 906-935 (1174)
125 smart00787 Spc7 Spc7 kinetocho 88.6 22 0.00047 41.6 17.7 60 506-565 205-264 (312)
126 COG4372 Uncharacterized protei 88.5 63 0.0014 38.7 23.0 13 823-835 469-481 (499)
127 PF12128 DUF3584: Protein of u 88.4 66 0.0014 44.0 24.5 23 204-226 170-192 (1201)
128 PRK09039 hypothetical protein; 88.1 32 0.00069 40.6 18.9 22 451-472 45-66 (343)
129 PF05483 SCP-1: Synaptonemal c 88.1 73 0.0016 40.7 22.2 40 452-491 527-566 (786)
130 KOG4643 Uncharacterized coiled 87.9 63 0.0014 42.8 22.1 20 611-630 569-588 (1195)
131 PF09730 BicD: Microtubule-ass 87.9 23 0.00051 45.5 18.6 100 968-1084 549-681 (717)
132 PRK08116 hypothetical protein; 87.6 0.33 7.2E-06 54.6 2.4 51 157-208 80-132 (268)
133 PRK07952 DNA replication prote 87.6 0.49 1.1E-05 52.8 3.7 50 159-209 69-118 (244)
134 PRK14086 dnaA chromosomal repl 87.6 0.38 8.2E-06 60.1 3.0 51 157-209 283-333 (617)
135 KOG0995 Centromere-associated 87.5 10 0.00023 46.9 14.7 31 536-566 297-327 (581)
136 COG5185 HEC1 Protein involved 87.5 65 0.0014 39.5 20.6 31 445-475 330-360 (622)
137 PF08614 ATG16: Autophagy prot 87.5 5.6 0.00012 42.9 11.4 46 518-563 115-160 (194)
138 KOG0946 ER-Golgi vesicle-tethe 87.5 18 0.00039 46.5 16.9 8 375-382 521-528 (970)
139 PRK03992 proteasome-activating 87.4 15 0.00032 43.7 15.9 18 190-207 165-182 (389)
140 KOG0804 Cytoplasmic Zn-finger 87.3 29 0.00064 42.1 17.7 28 540-567 421-448 (493)
141 PRK14088 dnaA chromosomal repl 87.2 0.4 8.6E-06 57.7 2.8 50 156-208 99-148 (440)
142 PF04849 HAP1_N: HAP1 N-termin 87.1 54 0.0012 38.3 19.4 43 507-549 215-257 (306)
143 TIGR03420 DnaA_homol_Hda DnaA 87.0 0.51 1.1E-05 50.4 3.3 46 157-207 10-55 (226)
144 COG4942 Membrane-bound metallo 86.9 79 0.0017 38.5 21.2 27 452-478 59-85 (420)
145 PRK00106 hypothetical protein; 86.8 70 0.0015 40.1 21.5 88 651-771 235-325 (535)
146 PF06785 UPF0242: Uncharacteri 86.7 74 0.0016 37.5 21.7 117 452-572 92-226 (401)
147 KOG0963 Transcription factor/C 86.6 1E+02 0.0022 39.0 23.5 95 449-543 239-341 (629)
148 PRK05642 DNA replication initi 86.5 0.55 1.2E-05 51.7 3.2 49 157-208 14-63 (234)
149 TIGR03319 YmdA_YtgF conserved 86.5 74 0.0016 39.7 21.6 87 651-770 214-303 (514)
150 PRK12704 phosphodiesterase; Pr 86.3 73 0.0016 39.8 21.4 32 737-770 278-309 (520)
151 COG2804 PulE Type II secretory 86.3 0.37 8.1E-06 58.5 1.9 31 179-209 247-277 (500)
152 KOG4674 Uncharacterized conser 86.2 47 0.001 46.6 20.9 32 58-89 800-831 (1822)
153 PF15070 GOLGA2L5: Putative go 86.1 41 0.00088 42.8 19.3 30 606-635 286-315 (617)
154 TIGR00362 DnaA chromosomal rep 86.0 0.5 1.1E-05 55.8 2.8 50 157-208 105-154 (405)
155 KOG0612 Rho-associated, coiled 85.9 83 0.0018 42.6 22.0 17 411-427 583-599 (1317)
156 KOG0728 26S proteasome regulat 85.8 7.1 0.00015 44.3 11.2 66 56-125 17-89 (404)
157 KOG4807 F-actin binding protei 85.8 51 0.0011 39.4 18.3 27 603-629 509-535 (593)
158 PF10174 Cast: RIM-binding pro 85.6 61 0.0013 42.3 20.8 32 60-91 50-81 (775)
159 PF04849 HAP1_N: HAP1 N-termin 85.6 62 0.0013 37.8 18.9 18 456-473 171-188 (306)
160 PRK08903 DnaA regulatory inact 85.5 0.7 1.5E-05 49.9 3.4 47 157-207 13-59 (227)
161 PF12128 DUF3584: Protein of u 85.5 91 0.002 42.7 23.5 38 590-628 763-800 (1201)
162 KOG0995 Centromere-associated 85.4 1.1E+02 0.0024 38.4 22.3 47 516-562 343-389 (581)
163 KOG0946 ER-Golgi vesicle-tethe 85.3 8.2 0.00018 49.3 12.5 51 514-564 666-716 (970)
164 PF15619 Lebercilin: Ciliary p 85.3 63 0.0014 35.4 19.2 24 542-565 166-189 (194)
165 PRK00149 dnaA chromosomal repl 85.2 0.55 1.2E-05 56.4 2.6 50 157-208 117-166 (450)
166 PF04012 PspA_IM30: PspA/IM30 85.1 36 0.00077 37.2 16.3 21 457-477 28-48 (221)
167 TIGR01843 type_I_hlyD type I s 85.1 86 0.0019 36.8 22.5 23 607-629 247-269 (423)
168 PF00769 ERM: Ezrin/radixin/mo 85.0 44 0.00096 37.7 17.2 113 455-567 8-123 (246)
169 KOG0976 Rho/Rac1-interacting s 84.8 85 0.0019 40.7 20.5 13 726-738 552-564 (1265)
170 PF00261 Tropomyosin: Tropomyo 84.7 71 0.0015 35.6 22.6 19 548-566 170-188 (237)
171 PF15070 GOLGA2L5: Putative go 84.6 76 0.0016 40.5 20.7 11 1106-1116 576-586 (617)
172 PF07926 TPR_MLP1_2: TPR/MLP1/ 84.2 52 0.0011 33.5 18.0 26 543-568 101-126 (132)
173 PRK06835 DNA replication prote 84.1 0.43 9.3E-06 55.5 1.1 37 172-209 166-202 (329)
174 TIGR02928 orc1/cdc6 family rep 84.1 0.88 1.9E-05 52.4 3.6 49 159-207 8-57 (365)
175 PF13851 GAS: Growth-arrest sp 84.0 72 0.0016 35.0 23.4 20 597-616 180-199 (201)
176 PF10186 Atg14: UV radiation r 84.0 78 0.0017 35.4 19.0 24 454-477 22-45 (302)
177 PF04111 APG6: Autophagy prote 83.9 19 0.00042 41.9 14.2 51 519-569 85-135 (314)
178 KOG4360 Uncharacterized coiled 83.9 51 0.0011 40.7 17.7 13 356-368 81-93 (596)
179 PRK14087 dnaA chromosomal repl 83.6 0.69 1.5E-05 55.9 2.5 49 158-208 111-159 (450)
180 PF15254 CCDC14: Coiled-coil d 83.6 87 0.0019 40.6 20.1 49 520-568 509-557 (861)
181 PF09728 Taxilin: Myosin-like 83.5 97 0.0021 36.2 22.4 38 447-484 116-153 (309)
182 PRK09087 hypothetical protein; 83.4 0.74 1.6E-05 50.6 2.5 47 157-208 16-62 (226)
183 COG1340 Uncharacterized archae 83.4 98 0.0021 36.1 20.3 36 456-491 155-190 (294)
184 PF06705 SF-assemblin: SF-asse 83.3 83 0.0018 35.2 20.4 34 595-628 157-190 (247)
185 COG2433 Uncharacterized conser 83.3 19 0.00041 45.0 14.2 22 539-560 487-508 (652)
186 TIGR01843 type_I_hlyD type I s 83.1 1E+02 0.0022 36.2 20.0 19 603-621 250-268 (423)
187 PF13870 DUF4201: Domain of un 83.0 69 0.0015 34.0 19.2 22 602-623 148-169 (177)
188 KOG0964 Structural maintenance 82.8 80 0.0017 41.8 19.6 27 195-228 30-56 (1200)
189 PF08614 ATG16: Autophagy prot 82.5 10 0.00022 40.9 10.6 48 521-568 132-179 (194)
190 KOG0018 Structural maintenance 82.2 45 0.00098 44.3 17.4 38 595-632 398-435 (1141)
191 KOG0999 Microtubule-associated 82.1 1.4E+02 0.0031 37.3 20.5 35 887-930 492-533 (772)
192 KOG0994 Extracellular matrix g 81.9 1.4E+02 0.0031 40.3 21.3 25 608-632 1726-1750(1758)
193 PF05483 SCP-1: Synaptonemal c 81.9 1.4E+02 0.0031 38.3 20.8 33 449-481 531-563 (786)
194 PRK00411 cdc6 cell division co 81.3 1.4 3E-05 51.4 3.8 46 162-207 26-72 (394)
195 KOG2991 Splicing regulator [RN 81.2 93 0.002 35.5 17.3 67 508-574 239-305 (330)
196 KOG0963 Transcription factor/C 81.1 1.7E+02 0.0036 37.2 22.2 80 533-632 189-268 (629)
197 PF05701 WEMBL: Weak chloropla 81.0 1.6E+02 0.0034 36.9 22.8 16 548-563 338-353 (522)
198 COG1340 Uncharacterized archae 80.9 38 0.00083 39.3 14.7 15 614-628 187-201 (294)
199 KOG2751 Beclin-like protein [S 80.8 1E+02 0.0022 37.5 18.5 47 523-569 222-268 (447)
200 PRK08727 hypothetical protein; 80.8 1 2.2E-05 49.5 2.3 45 157-208 14-59 (233)
201 PRK01156 chromosome segregatio 80.8 2E+02 0.0044 37.9 24.1 16 192-207 25-40 (895)
202 KOG4593 Mitotic checkpoint pro 80.7 1E+02 0.0022 39.6 19.2 46 1071-1120 599-645 (716)
203 COG1484 DnaC DNA replication p 80.5 1.3 2.8E-05 49.7 3.1 49 159-209 76-124 (254)
204 COG3883 Uncharacterized protei 80.4 1.2E+02 0.0025 35.0 19.5 24 456-479 70-93 (265)
205 KOG0288 WD40 repeat protein Ti 80.1 95 0.0021 37.6 17.8 17 709-725 225-241 (459)
206 KOG4360 Uncharacterized coiled 80.0 51 0.0011 40.7 15.8 22 695-716 431-452 (596)
207 PF10146 zf-C4H2: Zinc finger- 79.9 69 0.0015 36.0 16.1 41 520-560 61-101 (230)
208 COG1842 PspA Phage shock prote 79.9 75 0.0016 35.6 16.3 23 458-480 30-52 (225)
209 COG2433 Uncharacterized conser 79.8 33 0.00072 43.0 14.6 10 137-146 134-143 (652)
210 PF10226 DUF2216: Uncharacteri 79.8 1E+02 0.0022 33.9 16.8 50 446-495 42-91 (195)
211 PF04851 ResIII: Type III rest 79.7 1 2.2E-05 45.6 1.8 30 180-209 14-44 (184)
212 PRK08939 primosomal protein Dn 79.6 1 2.3E-05 51.8 2.0 52 158-209 123-175 (306)
213 KOG0727 26S proteasome regulat 79.6 4.1 8.9E-05 46.1 6.5 74 158-231 151-247 (408)
214 PF15066 CAGE1: Cancer-associa 79.5 95 0.0021 38.1 17.7 10 70-79 37-46 (527)
215 KOG2129 Uncharacterized conser 79.4 1.6E+02 0.0034 35.9 19.4 33 538-570 276-308 (552)
216 PRK11281 hypothetical protein; 79.3 1.9E+02 0.0041 39.5 22.3 31 536-566 230-260 (1113)
217 PF13863 DUF4200: Domain of un 78.7 73 0.0016 31.6 16.6 33 536-568 77-109 (126)
218 KOG4673 Transcription factor T 78.5 1.1E+02 0.0024 39.2 18.2 58 989-1063 901-959 (961)
219 PF14915 CCDC144C: CCDC144C pr 78.4 1.1E+02 0.0023 35.8 17.1 18 503-520 68-85 (305)
220 PF10498 IFT57: Intra-flagella 78.4 93 0.002 37.2 17.4 61 505-565 259-319 (359)
221 PF04111 APG6: Autophagy prote 78.2 33 0.00072 40.0 13.5 19 542-560 115-133 (314)
222 PRK10884 SH3 domain-containing 77.8 36 0.00077 37.6 12.9 29 449-477 90-118 (206)
223 KOG0979 Structural maintenance 77.7 73 0.0016 42.3 17.1 15 194-208 46-60 (1072)
224 PRK04778 septation ring format 77.7 1.4E+02 0.0031 37.5 19.8 47 519-565 383-429 (569)
225 KOG0982 Centrosomal protein Nu 77.6 1.8E+02 0.0039 35.5 19.1 50 517-566 337-386 (502)
226 PF10473 CENP-F_leu_zip: Leuci 77.4 98 0.0021 32.4 18.4 30 456-485 14-43 (140)
227 COG1474 CDC6 Cdc6-related prot 77.4 1.9 4E-05 51.0 3.2 33 175-207 26-59 (366)
228 KOG0978 E3 ubiquitin ligase in 77.3 1.2E+02 0.0026 39.1 18.8 48 517-564 571-618 (698)
229 PRK08181 transposase; Validate 77.3 1.2 2.6E-05 50.4 1.7 21 187-209 105-125 (269)
230 KOG0240 Kinesin (SMY1 subfamil 77.2 1.9E+02 0.0041 36.5 19.7 17 214-230 171-190 (607)
231 PRK04778 septation ring format 77.1 1.6E+02 0.0034 37.1 19.9 26 745-771 516-541 (569)
232 KOG0999 Microtubule-associated 77.1 1E+02 0.0022 38.5 17.2 30 449-478 47-76 (772)
233 COG0593 DnaA ATPase involved i 76.8 1.6 3.4E-05 52.3 2.5 50 157-208 82-131 (408)
234 PF11559 ADIP: Afadin- and alp 76.5 98 0.0021 32.0 18.1 20 600-619 127-146 (151)
235 KOG0964 Structural maintenance 75.9 1.5E+02 0.0033 39.4 19.0 50 1048-1100 855-904 (1200)
236 PF09730 BicD: Microtubule-ass 75.8 2.6E+02 0.0056 36.5 23.8 52 510-565 95-146 (717)
237 KOG0979 Structural maintenance 75.6 2.5E+02 0.0053 37.7 20.9 7 241-247 88-94 (1072)
238 TIGR02538 type_IV_pilB type IV 75.6 1.4 2.9E-05 54.9 1.6 29 181-209 307-335 (564)
239 PF15619 Lebercilin: Ciliary p 75.5 1.3E+02 0.0029 33.0 22.4 20 613-632 171-190 (194)
240 cd00009 AAA The AAA+ (ATPases 75.5 2.1 4.6E-05 40.7 2.5 19 189-207 18-36 (151)
241 PRK10436 hypothetical protein; 75.4 1.5 3.1E-05 53.5 1.7 28 181-208 209-236 (462)
242 PRK06921 hypothetical protein; 75.4 2.2 4.7E-05 48.2 3.0 37 173-209 97-136 (266)
243 PRK06526 transposase; Provisio 74.9 1.5 3.2E-05 49.3 1.5 21 187-209 97-117 (254)
244 PTZ00361 26 proteosome regulat 74.9 40 0.00087 41.1 13.5 16 192-207 219-234 (438)
245 KOG4593 Mitotic checkpoint pro 74.8 2.6E+02 0.0057 36.1 23.0 20 613-632 299-318 (716)
246 PF15294 Leu_zip: Leucine zipp 74.5 90 0.002 36.1 15.3 35 457-491 130-164 (278)
247 PF15290 Syntaphilin: Golgi-lo 74.5 69 0.0015 36.9 14.1 43 526-568 124-166 (305)
248 PF06818 Fez1: Fez1; InterPro 74.4 88 0.0019 34.6 14.6 11 466-476 31-41 (202)
249 PRK12422 chromosomal replicati 74.4 2.4 5.1E-05 51.4 3.1 51 156-208 105-159 (445)
250 PF10146 zf-C4H2: Zinc finger- 74.2 1.1E+02 0.0023 34.5 15.6 65 505-569 39-103 (230)
251 TIGR02977 phageshock_pspA phag 74.0 1.4E+02 0.003 33.0 16.3 111 457-567 29-140 (219)
252 cd00046 DEXDc DEAD-like helica 74.0 1.4 3E-05 41.5 0.8 17 193-209 3-19 (144)
253 PRK00409 recombination and DNA 73.8 98 0.0021 40.6 17.4 38 892-929 737-775 (782)
254 PTZ00112 origin recognition co 73.8 1.5 3.2E-05 56.9 1.3 36 172-207 761-798 (1164)
255 KOG4809 Rab6 GTPase-interactin 73.7 56 0.0012 40.6 14.0 77 537-630 328-404 (654)
256 TIGR02533 type_II_gspE general 73.6 1.8 3.9E-05 52.9 1.9 29 180-208 232-260 (486)
257 PF02841 GBP_C: Guanylate-bind 73.3 1.3E+02 0.0029 34.6 16.6 15 545-559 282-296 (297)
258 PF03915 AIP3: Actin interacti 73.2 1.8E+02 0.0039 35.6 18.2 100 454-553 215-319 (424)
259 PF00261 Tropomyosin: Tropomyo 73.2 1.6E+02 0.0035 32.9 23.2 28 603-630 208-235 (237)
260 PRK10929 putative mechanosensi 72.6 2.7E+02 0.0059 38.1 21.2 29 538-566 213-241 (1109)
261 KOG4302 Microtubule-associated 72.4 1.1E+02 0.0024 39.3 16.6 33 598-630 232-264 (660)
262 KOG0249 LAR-interacting protei 72.3 1.1E+02 0.0024 39.4 16.2 16 937-952 676-691 (916)
263 KOG0018 Structural maintenance 72.3 3.5E+02 0.0076 36.6 21.1 40 452-491 310-349 (1141)
264 PRK12402 replication factor C 72.2 2.1 4.6E-05 48.5 1.9 41 160-207 13-53 (337)
265 TIGR01005 eps_transp_fam exopo 72.2 2.6E+02 0.0055 36.3 20.5 33 727-770 429-461 (754)
266 PLN03188 kinesin-12 family pro 72.1 3.3E+02 0.0073 37.5 21.3 65 500-564 1116-1190(1320)
267 PF15290 Syntaphilin: Golgi-lo 71.5 71 0.0015 36.9 13.3 41 520-560 125-165 (305)
268 KOG1853 LIS1-interacting prote 71.5 1.9E+02 0.0042 33.1 21.2 8 695-702 239-246 (333)
269 PF00270 DEAD: DEAD/DEAH box h 71.3 2.4 5.2E-05 42.7 1.9 26 181-208 7-32 (169)
270 TIGR03319 YmdA_YtgF conserved 71.1 2.1E+02 0.0046 35.8 18.6 15 883-897 295-309 (514)
271 PF13245 AAA_19: Part of AAA d 71.1 2.3 5E-05 39.3 1.6 25 182-207 3-27 (76)
272 PF13401 AAA_22: AAA domain; P 70.9 1.4 3E-05 42.7 0.1 18 190-207 4-21 (131)
273 KOG2751 Beclin-like protein [S 70.8 1.4E+02 0.0031 36.4 16.2 20 412-431 107-126 (447)
274 PF10473 CENP-F_leu_zip: Leuci 70.8 1.4E+02 0.0031 31.3 18.7 27 506-532 81-107 (140)
275 PRK13894 conjugal transfer ATP 70.7 9.5 0.00021 44.4 6.8 28 179-207 138-165 (319)
276 TIGR01420 pilT_fam pilus retra 70.4 2.4 5.2E-05 49.4 1.9 28 181-208 113-140 (343)
277 PRK10698 phage shock protein P 70.3 1.8E+02 0.004 32.4 16.3 111 457-567 29-140 (222)
278 COG5008 PilU Tfp pilus assembl 70.1 3.2 6.9E-05 47.4 2.6 30 179-208 116-145 (375)
279 smart00053 DYNc Dynamin, GTPas 69.9 13 0.00028 41.8 7.3 54 281-343 85-138 (240)
280 smart00806 AIP3 Actin interact 69.9 2.3E+02 0.0049 34.7 17.7 97 454-550 219-320 (426)
281 KOG0288 WD40 repeat protein Ti 69.8 1.8E+02 0.0039 35.4 16.6 34 695-728 225-263 (459)
282 PF07798 DUF1640: Protein of u 69.7 1.6E+02 0.0035 31.5 19.1 12 418-429 2-13 (177)
283 cd01131 PilT Pilus retraction 69.7 1.9 4.1E-05 46.2 0.8 19 190-208 1-19 (198)
284 PF12846 AAA_10: AAA-like doma 69.6 1.8 4E-05 47.4 0.7 19 190-208 1-19 (304)
285 PF10212 TTKRSYEDQ: Predicted 69.5 1E+02 0.0022 38.4 15.1 61 464-524 439-499 (518)
286 PF13191 AAA_16: AAA ATPase do 69.2 1.7 3.7E-05 44.4 0.3 34 174-207 8-41 (185)
287 PF10267 Tmemb_cc2: Predicted 69.2 1.9E+02 0.0041 35.2 17.0 45 516-560 273-318 (395)
288 smart00382 AAA ATPases associa 69.1 2 4.3E-05 40.2 0.7 18 191-208 3-20 (148)
289 PF01935 DUF87: Domain of unkn 69.1 1.9 4.1E-05 46.6 0.6 16 192-207 25-40 (229)
290 TIGR02680 conserved hypothetic 69.0 4.8E+02 0.01 36.6 23.1 16 192-207 26-41 (1353)
291 TIGR03185 DNA_S_dndD DNA sulfu 68.8 1.3E+02 0.0028 38.4 16.6 16 192-207 30-45 (650)
292 TIGR03752 conj_TIGR03752 integ 68.7 44 0.00095 41.1 11.7 18 547-564 123-140 (472)
293 PF05701 WEMBL: Weak chloropla 68.5 3.1E+02 0.0068 34.3 23.3 32 450-481 293-324 (522)
294 PF01637 Arch_ATPase: Archaeal 68.5 2.2 4.8E-05 44.8 1.0 30 178-207 8-37 (234)
295 TIGR02525 plasmid_TraJ plasmid 68.4 3 6.4E-05 49.5 2.1 20 189-208 148-167 (372)
296 TIGR00635 ruvB Holliday juncti 67.7 3.3 7.1E-05 46.7 2.2 43 165-207 3-47 (305)
297 TIGR02524 dot_icm_DotB Dot/Icm 67.5 3.1 6.6E-05 49.1 2.0 21 188-208 132-152 (358)
298 PF07889 DUF1664: Protein of u 67.5 1.2E+02 0.0027 31.2 13.0 23 538-560 101-123 (126)
299 TIGR03015 pepcterm_ATPase puta 67.4 3.9 8.5E-05 44.9 2.7 22 186-207 39-60 (269)
300 PF10186 Atg14: UV radiation r 67.4 2.1E+02 0.0046 32.0 19.3 17 945-961 276-292 (302)
301 PRK12704 phosphodiesterase; Pr 67.0 1.8E+02 0.0039 36.4 16.9 16 651-666 220-235 (520)
302 PF05911 DUF869: Plant protein 66.6 2.1E+02 0.0045 37.6 17.7 33 57-89 128-160 (769)
303 PHA01754 hypothetical protein 66.4 9.3 0.0002 34.4 4.2 49 962-1019 12-60 (69)
304 PF06818 Fez1: Fez1; InterPro 66.3 1.1E+02 0.0025 33.8 13.2 93 439-531 11-106 (202)
305 PF05622 HOOK: HOOK protein; 66.1 1.9 4.2E-05 54.9 0.0 27 599-625 384-410 (713)
306 PF15397 DUF4618: Domain of un 66.1 2.5E+02 0.0054 32.3 20.2 25 457-481 79-103 (258)
307 KOG0992 Uncharacterized conser 65.7 1.8E+02 0.004 36.1 15.8 36 599-634 389-424 (613)
308 cd01129 PulE-GspE PulE/GspE Th 65.6 3.7 8.1E-05 46.3 2.1 29 180-208 70-98 (264)
309 PRK00106 hypothetical protein; 65.6 2.9E+02 0.0064 34.9 18.2 15 1075-1089 455-469 (535)
310 PF05700 BCAS2: Breast carcino 65.3 73 0.0016 35.3 11.9 20 457-476 141-160 (221)
311 TIGR02680 conserved hypothetic 65.2 1.6E+02 0.0034 41.1 17.3 24 376-399 193-218 (1353)
312 KOG4572 Predicted DNA-binding 65.0 3.8E+02 0.0083 35.3 18.7 22 611-632 1090-1111(1424)
313 TIGR01000 bacteriocin_acc bact 64.7 3.3E+02 0.0072 33.2 21.9 27 603-629 288-314 (457)
314 PF10212 TTKRSYEDQ: Predicted 64.6 1.5E+02 0.0032 37.1 15.1 29 457-485 418-446 (518)
315 TIGR00634 recN DNA repair prot 64.6 3.7E+02 0.0081 33.8 19.2 15 193-207 25-39 (563)
316 KOG0249 LAR-interacting protei 64.6 2.5E+02 0.0055 36.4 17.1 35 446-480 92-126 (916)
317 PF06120 Phage_HK97_TLTM: Tail 64.5 2.4E+02 0.0053 33.1 16.2 83 394-478 21-107 (301)
318 PF00437 T2SE: Type II/IV secr 64.4 3.1 6.7E-05 46.3 1.2 29 178-207 116-144 (270)
319 PF09738 DUF2051: Double stran 64.3 2.9E+02 0.0063 32.4 19.7 23 600-622 220-242 (302)
320 PF11932 DUF3450: Protein of u 64.1 95 0.0021 34.8 12.7 8 695-702 195-202 (251)
321 TIGR03007 pepcterm_ChnLen poly 64.0 3.4E+02 0.0074 33.2 20.1 165 455-629 157-347 (498)
322 KOG0243 Kinesin-like protein [ 63.8 3.4E+02 0.0074 36.7 18.9 25 456-480 445-469 (1041)
323 PRK13833 conjugal transfer pro 63.7 21 0.00045 41.8 7.7 28 179-207 134-161 (323)
324 PRK09343 prefoldin subunit bet 62.9 1.8E+02 0.0039 29.5 14.5 35 536-570 81-115 (121)
325 PF05266 DUF724: Protein of un 62.6 2.4E+02 0.0052 30.9 17.1 56 509-564 128-183 (190)
326 PF15450 DUF4631: Domain of un 62.5 4E+02 0.0088 33.5 20.2 118 455-572 354-480 (531)
327 PF13604 AAA_30: AAA domain; P 62.4 4.3 9.4E-05 43.5 1.8 28 180-207 8-35 (196)
328 COG4026 Uncharacterized protei 62.0 70 0.0015 35.8 10.6 43 713-755 227-271 (290)
329 PF05911 DUF869: Plant protein 62.0 5E+02 0.011 34.3 22.1 26 601-626 274-299 (769)
330 PRK01156 chromosome segregatio 61.7 5E+02 0.011 34.3 23.3 25 1087-1111 825-849 (895)
331 PF15066 CAGE1: Cancer-associa 61.7 4E+02 0.0086 33.1 22.0 16 414-429 315-330 (527)
332 TIGR02338 gimC_beta prefoldin, 61.7 1.7E+02 0.0037 28.9 13.4 32 536-567 77-108 (110)
333 KOG0982 Centrosomal protein Nu 61.5 3.9E+02 0.0084 32.9 20.4 29 604-632 365-393 (502)
334 COG4477 EzrA Negative regulato 61.2 4.1E+02 0.0088 33.6 17.8 27 506-532 310-336 (570)
335 KOG1003 Actin filament-coating 61.2 2.7E+02 0.0058 31.0 18.4 26 457-482 9-34 (205)
336 TIGR03017 EpsF chain length de 61.0 3.6E+02 0.0078 32.4 19.9 19 357-375 73-91 (444)
337 PF01695 IstB_IS21: IstB-like 61.0 4.9 0.00011 42.7 1.9 19 191-209 48-66 (178)
338 PRK11281 hypothetical protein; 60.6 3.3E+02 0.0071 37.4 18.5 20 605-624 233-252 (1113)
339 PF06637 PV-1: PV-1 protein (P 60.3 3.2E+02 0.0069 33.1 16.0 49 442-490 282-330 (442)
340 TIGR02782 TrbB_P P-type conjug 60.0 5.8 0.00012 45.6 2.3 28 179-207 122-149 (299)
341 TIGR02449 conserved hypothetic 59.5 80 0.0017 29.1 8.9 51 510-560 12-62 (65)
342 PLN03229 acetyl-coenzyme A car 59.2 3.8E+02 0.0082 35.1 17.7 21 189-209 281-301 (762)
343 PF15035 Rootletin: Ciliary ro 59.1 1.8E+02 0.004 31.6 13.2 21 458-478 15-35 (182)
344 PF14197 Cep57_CLD_2: Centroso 59.0 1.2E+02 0.0025 28.2 10.0 17 463-479 2-18 (69)
345 PF06309 Torsin: Torsin; Inte 58.5 4.7 0.0001 41.2 1.2 43 174-226 33-79 (127)
346 PF13207 AAA_17: AAA domain; P 58.4 3.9 8.5E-05 39.3 0.6 16 192-207 1-16 (121)
347 PF13479 AAA_24: AAA domain 58.4 4.6 9.9E-05 43.8 1.1 20 190-209 3-22 (213)
348 PF09744 Jnk-SapK_ap_N: JNK_SA 58.2 2.6E+02 0.0056 29.9 15.8 29 500-528 84-112 (158)
349 PF10234 Cluap1: Clusterin-ass 58.0 3.5E+02 0.0076 31.3 17.5 32 501-532 186-217 (267)
350 PF05384 DegS: Sensor protein 57.9 2.7E+02 0.0058 29.9 19.4 25 445-469 20-44 (159)
351 PF00448 SRP54: SRP54-type pro 57.7 3.8 8.3E-05 44.2 0.4 16 192-207 3-18 (196)
352 PF13863 DUF4200: Domain of un 57.6 2E+02 0.0044 28.5 16.8 19 541-559 89-107 (126)
353 PF05010 TACC: Transforming ac 57.5 3.1E+02 0.0068 30.6 22.3 11 611-621 180-190 (207)
354 PF01920 Prefoldin_2: Prefoldi 56.7 1.3E+02 0.0028 28.6 10.6 83 537-628 9-91 (106)
355 TIGR03499 FlhF flagellar biosy 56.7 9.9 0.00022 43.2 3.5 18 191-208 195-212 (282)
356 PF05970 PIF1: PIF1-like helic 56.6 7.4 0.00016 45.8 2.5 37 168-207 3-39 (364)
357 PRK12723 flagellar biosynthesi 56.5 10 0.00022 45.4 3.6 18 190-207 174-191 (388)
358 PF10211 Ax_dynein_light: Axon 56.4 3E+02 0.0065 30.0 18.8 151 451-631 32-188 (189)
359 TIGR01069 mutS2 MutS2 family p 56.4 2.5E+02 0.0055 36.9 16.2 35 892-926 726-762 (771)
360 cd01130 VirB11-like_ATPase Typ 56.1 7.6 0.00017 41.1 2.3 30 178-208 14-43 (186)
361 PRK12705 hypothetical protein; 56.0 5.1E+02 0.011 32.6 23.4 17 650-666 207-223 (508)
362 COG4962 CpaF Flp pilus assembl 55.9 15 0.00032 43.5 4.7 29 179-208 163-191 (355)
363 TIGR01069 mutS2 MutS2 family p 55.8 1.1E+02 0.0024 40.0 12.9 16 192-207 324-339 (771)
364 PF05622 HOOK: HOOK protein; 55.8 3.3 7.2E-05 52.9 -0.5 32 597-629 317-348 (713)
365 PF12004 DUF3498: Domain of un 55.1 4 8.6E-05 50.1 0.0 49 455-506 372-420 (495)
366 PHA02544 44 clamp loader, smal 55.1 7 0.00015 44.3 1.9 22 187-208 39-61 (316)
367 PRK13900 type IV secretion sys 55.0 7.4 0.00016 45.5 2.1 29 178-207 149-177 (332)
368 COG4717 Uncharacterized conser 54.8 6.7E+02 0.014 33.6 20.4 28 605-632 773-800 (984)
369 TIGR01005 eps_transp_fam exopo 54.8 1.4E+02 0.0031 38.6 13.6 8 180-187 85-92 (754)
370 PF13086 AAA_11: AAA domain; P 54.7 6.4 0.00014 41.3 1.5 27 181-208 9-35 (236)
371 PF05557 MAD: Mitotic checkpoi 54.5 39 0.00085 43.5 8.6 22 611-632 564-585 (722)
372 PF00004 AAA: ATPase family as 54.5 4.7 0.0001 38.7 0.4 15 193-207 1-15 (132)
373 COG4913 Uncharacterized protei 54.5 6.3E+02 0.014 33.2 19.0 30 595-627 856-885 (1104)
374 PF07106 TBPIP: Tat binding pr 54.0 1.6E+02 0.0035 31.0 11.7 25 456-480 76-100 (169)
375 TIGR00634 recN DNA repair prot 53.8 3.8E+02 0.0083 33.7 16.8 19 721-739 440-458 (563)
376 PF05496 RuvB_N: Holliday junc 53.8 14 0.0003 41.5 3.8 43 165-207 23-67 (233)
377 PRK00409 recombination and DNA 53.7 1.2E+02 0.0026 39.8 12.7 11 781-791 750-760 (782)
378 PRK09841 cryptic autophosphory 53.5 6.3E+02 0.014 32.9 20.9 25 396-420 224-248 (726)
379 KOG1899 LAR transmembrane tyro 53.1 6.2E+02 0.013 32.7 20.2 17 408-424 103-119 (861)
380 smart00487 DEXDc DEAD-like hel 53.1 9.6 0.00021 38.2 2.4 25 183-208 18-42 (201)
381 KOG1899 LAR transmembrane tyro 53.0 2.2E+02 0.0047 36.4 13.8 13 845-857 489-501 (861)
382 PF14992 TMCO5: TMCO5 family 52.9 1.7E+02 0.0037 34.0 12.2 37 752-788 231-269 (280)
383 PRK13851 type IV secretion sys 52.8 8.4 0.00018 45.3 2.1 30 178-208 151-180 (344)
384 PRK13342 recombination factor 52.6 8 0.00017 46.1 2.0 38 170-207 16-53 (413)
385 PF06160 EzrA: Septation ring 52.4 5.9E+02 0.013 32.2 19.7 38 1050-1087 450-488 (560)
386 PRK00080 ruvB Holliday junctio 52.3 8.9 0.00019 44.2 2.2 41 168-208 27-69 (328)
387 PF10267 Tmemb_cc2: Predicted 52.2 4.6E+02 0.01 32.0 16.3 17 60-76 8-24 (395)
388 PF08702 Fib_alpha: Fibrinogen 52.1 3.1E+02 0.0067 28.9 18.1 27 539-565 103-129 (146)
389 TIGR03819 heli_sec_ATPase heli 51.8 36 0.00078 40.1 7.1 29 178-207 167-195 (340)
390 TIGR00631 uvrb excinuclease AB 51.3 13 0.00028 47.4 3.6 90 159-253 2-98 (655)
391 COG4209 LplB ABC-type polysacc 51.1 5.3 0.00011 45.6 0.1 25 704-730 189-213 (309)
392 KOG0962 DNA repair protein RAD 51.1 5.1E+02 0.011 36.0 17.7 20 883-913 1185-1204(1294)
393 PF09304 Cortex-I_coil: Cortex 51.1 1.9E+02 0.0042 29.1 10.7 18 546-563 57-74 (107)
394 KOG1937 Uncharacterized conser 50.7 5E+02 0.011 32.2 15.9 8 200-207 49-56 (521)
395 TIGR02231 conserved hypothetic 50.3 1.8E+02 0.0039 36.0 13.1 29 454-482 73-101 (525)
396 KOG0962 DNA repair protein RAD 50.3 9.1E+02 0.02 33.8 20.0 25 541-565 879-903 (1294)
397 KOG0989 Replication factor C, 50.1 12 0.00027 43.6 2.8 27 181-207 47-74 (346)
398 PTZ00424 helicase 45; Provisio 50.1 9.1 0.0002 44.7 1.9 26 180-207 57-82 (401)
399 cd00268 DEADc DEAD-box helicas 50.1 11 0.00023 39.6 2.3 25 181-207 29-53 (203)
400 PF08172 CASP_C: CASP C termin 50.0 1.2E+02 0.0026 34.6 10.4 32 601-632 95-133 (248)
401 PRK04195 replication factor C 49.9 13 0.00028 45.3 3.3 37 171-207 19-56 (482)
402 PF00580 UvrD-helicase: UvrD/R 49.6 7.1 0.00015 43.2 0.9 29 189-226 12-40 (315)
403 TIGR03017 EpsF chain length de 49.5 2.7E+02 0.0059 33.4 14.1 11 727-737 395-405 (444)
404 PRK13729 conjugal transfer pil 49.5 57 0.0012 40.2 8.3 45 519-563 76-120 (475)
405 PF08647 BRE1: BRE1 E3 ubiquit 49.1 2.6E+02 0.0057 27.2 12.7 33 457-489 8-40 (96)
406 KOG4364 Chromatin assembly fac 49.0 3.6E+02 0.0079 34.8 14.9 27 607-633 360-386 (811)
407 PRK11776 ATP-dependent RNA hel 48.9 11 0.00023 45.5 2.2 26 180-207 33-58 (460)
408 PRK11519 tyrosine kinase; Prov 48.9 7.3E+02 0.016 32.3 20.1 24 398-421 226-249 (719)
409 KOG4302 Microtubule-associated 48.8 7.3E+02 0.016 32.3 19.7 22 611-632 310-331 (660)
410 COG3074 Uncharacterized protei 48.7 2.4E+02 0.0051 26.6 10.3 49 511-559 24-72 (79)
411 PF15035 Rootletin: Ciliary ro 48.6 3.9E+02 0.0085 29.1 14.6 20 456-475 20-39 (182)
412 PF04102 SlyX: SlyX; InterPro 48.5 89 0.0019 28.7 7.6 49 518-566 3-51 (69)
413 KOG3850 Predicted membrane pro 48.4 5.9E+02 0.013 31.0 16.4 19 546-564 352-370 (455)
414 PF01580 FtsK_SpoIIIE: FtsK/Sp 48.3 6.3 0.00014 41.9 0.2 16 192-207 40-55 (205)
415 KOG0926 DEAH-box RNA helicase 48.1 11 0.00024 48.4 2.3 30 958-987 1139-1168(1172)
416 KOG4677 Golgi integral membran 47.9 4E+02 0.0086 33.0 14.5 29 601-629 433-461 (554)
417 PF13671 AAA_33: AAA domain; P 47.8 7.5 0.00016 38.3 0.6 16 192-207 1-16 (143)
418 PF09787 Golgin_A5: Golgin sub 47.7 6.6E+02 0.014 31.4 20.6 16 606-621 399-414 (511)
419 PF00063 Myosin_head: Myosin h 47.7 11 0.00025 47.9 2.3 35 173-207 67-102 (689)
420 COG0419 SbcC ATPase involved i 47.6 8.4E+02 0.018 32.6 22.8 36 189-226 24-66 (908)
421 TIGR00348 hsdR type I site-spe 47.5 14 0.00029 47.2 3.0 31 178-209 247-282 (667)
422 PRK06547 hypothetical protein; 47.3 14 0.0003 39.2 2.6 28 180-207 5-32 (172)
423 COG0419 SbcC ATPase involved i 47.2 8.5E+02 0.018 32.6 22.9 18 611-628 422-439 (908)
424 KOG0972 Huntingtin interacting 47.0 5.4E+02 0.012 30.3 15.8 12 549-560 344-355 (384)
425 TIGR02881 spore_V_K stage V sp 47.0 17 0.00038 40.4 3.4 17 191-207 43-59 (261)
426 PF05700 BCAS2: Breast carcino 46.8 4.5E+02 0.0097 29.2 16.3 26 540-565 189-214 (221)
427 PF02562 PhoH: PhoH-like prote 46.6 13 0.00028 40.9 2.2 29 189-226 18-46 (205)
428 PRK10865 protein disaggregatio 46.6 17 0.00036 47.8 3.6 45 159-207 565-615 (857)
429 PF09744 Jnk-SapK_ap_N: JNK_SA 46.4 4E+02 0.0086 28.5 14.8 14 460-473 51-64 (158)
430 PLN03025 replication factor C 46.3 12 0.00026 43.0 2.1 35 171-208 18-52 (319)
431 PRK10869 recombination and rep 46.3 7.2E+02 0.016 31.5 19.4 14 194-207 26-39 (553)
432 PF03215 Rad17: Rad17 cell cyc 46.2 13 0.00028 46.2 2.4 31 177-207 30-62 (519)
433 PRK11192 ATP-dependent RNA hel 45.7 12 0.00027 44.4 2.1 26 180-207 30-55 (434)
434 TIGR03185 DNA_S_dndD DNA sulfu 45.7 7.7E+02 0.017 31.6 20.2 21 892-912 578-598 (650)
435 TIGR02788 VirB11 P-type DNA tr 45.5 60 0.0013 37.4 7.5 30 178-208 133-162 (308)
436 cd00124 MYSc Myosin motor doma 45.4 52 0.0011 42.2 7.6 35 173-207 68-103 (679)
437 PRK13764 ATPase; Provisional 45.3 11 0.00024 47.5 1.7 27 181-208 249-275 (602)
438 TIGR02338 gimC_beta prefoldin, 45.1 2.6E+02 0.0057 27.6 10.9 33 537-569 14-46 (110)
439 PF03915 AIP3: Actin interacti 45.0 4.1E+02 0.0088 32.7 14.4 18 458-475 150-167 (424)
440 PF13514 AAA_27: AAA domain 44.9 1E+03 0.022 32.7 24.0 35 598-632 352-386 (1111)
441 PRK15422 septal ring assembly 44.7 2.9E+02 0.0064 26.5 10.6 51 509-559 22-72 (79)
442 COG0630 VirB11 Type IV secreto 44.6 70 0.0015 37.2 7.9 49 158-208 106-161 (312)
443 PF06414 Zeta_toxin: Zeta toxi 44.5 9.8 0.00021 40.6 0.9 20 188-207 13-32 (199)
444 TIGR03495 phage_LysB phage lys 44.5 1.8E+02 0.0039 30.4 9.9 74 520-627 20-96 (135)
445 PF09789 DUF2353: Uncharacteri 44.4 6.2E+02 0.013 30.1 21.4 44 590-634 181-224 (319)
446 PRK09183 transposase/IS protei 44.3 12 0.00026 42.1 1.7 21 187-209 101-121 (259)
447 PF00910 RNA_helicase: RNA hel 44.2 7.9 0.00017 37.5 0.2 15 193-207 1-15 (107)
448 PRK04837 ATP-dependent RNA hel 44.0 13 0.00029 44.1 2.0 26 180-207 37-62 (423)
449 PF03962 Mnd1: Mnd1 family; I 43.9 4.5E+02 0.0098 28.6 13.4 109 436-545 60-168 (188)
450 PRK00440 rfc replication facto 43.7 13 0.00029 41.7 1.9 34 171-207 22-55 (319)
451 PF15450 DUF4631: Domain of un 43.7 7.8E+02 0.017 31.1 19.0 17 357-373 196-212 (531)
452 PRK09343 prefoldin subunit bet 43.5 3.2E+02 0.007 27.7 11.4 31 536-566 17-47 (121)
453 PF07889 DUF1664: Protein of u 43.5 3.9E+02 0.0086 27.6 12.7 30 536-565 92-121 (126)
454 PF13238 AAA_18: AAA domain; P 43.5 8.9 0.00019 36.7 0.4 15 193-207 1-15 (129)
455 PRK10361 DNA recombination pro 43.4 7.6E+02 0.017 30.9 23.7 29 603-631 169-197 (475)
456 PRK09841 cryptic autophosphory 43.3 8E+02 0.017 32.0 17.7 23 460-482 268-290 (726)
457 TIGR03545 conserved hypothetic 43.2 2E+02 0.0043 36.4 11.9 108 494-635 164-273 (555)
458 PF04012 PspA_IM30: PspA/IM30 42.8 4.8E+02 0.01 28.5 23.6 42 520-561 99-140 (221)
459 COG1201 Lhr Lhr-like helicases 42.8 27 0.00058 45.6 4.5 26 180-207 29-54 (814)
460 KOG2264 Exostosin EXT1L [Signa 42.2 1.6E+02 0.0035 37.0 10.4 25 752-776 414-438 (907)
461 PRK10590 ATP-dependent RNA hel 42.2 16 0.00035 44.1 2.3 26 180-207 30-55 (456)
462 PRK13341 recombination factor 41.9 16 0.00034 47.2 2.3 39 170-208 32-70 (725)
463 PRK00771 signal recognition pa 41.6 27 0.00058 42.6 4.1 19 189-207 94-112 (437)
464 PF13094 CENP-Q: CENP-Q, a CEN 41.5 4.4E+02 0.0095 27.6 13.8 135 422-556 1-159 (160)
465 KOG1962 B-cell receptor-associ 41.4 4.4E+02 0.0096 29.7 12.9 57 507-563 153-209 (216)
466 KOG3647 Predicted coiled-coil 41.4 6.3E+02 0.014 29.4 15.1 31 502-532 130-160 (338)
467 PF07724 AAA_2: AAA domain (Cd 41.3 12 0.00025 39.7 0.9 17 191-207 4-20 (171)
468 PF12761 End3: Actin cytoskele 41.2 2.1E+02 0.0046 31.6 10.2 20 460-479 97-116 (195)
469 PRK14722 flhF flagellar biosyn 41.0 12 0.00027 44.5 1.1 18 190-207 137-154 (374)
470 PF12072 DUF3552: Domain of un 41.0 5.2E+02 0.011 28.3 15.7 156 470-628 24-184 (201)
471 PF14817 HAUS5: HAUS augmin-li 41.0 3.8E+02 0.0082 34.6 13.9 31 453-483 80-110 (632)
472 cd01382 MYSc_type_VI Myosin mo 40.6 77 0.0017 41.1 8.1 34 174-207 74-108 (717)
473 TIGR02231 conserved hypothetic 40.6 1.7E+02 0.0037 36.3 10.8 25 458-482 70-94 (525)
474 PRK11519 tyrosine kinase; Prov 40.4 7.3E+02 0.016 32.3 16.7 24 459-482 267-290 (719)
475 PF07728 AAA_5: AAA domain (dy 40.4 9.9 0.00022 37.7 0.2 15 193-207 2-16 (139)
476 PF13514 AAA_27: AAA domain 40.4 1.2E+03 0.025 32.1 21.2 17 719-735 946-962 (1111)
477 PF05673 DUF815: Protein of un 40.4 36 0.00078 38.7 4.5 70 159-255 24-94 (249)
478 PRK05703 flhF flagellar biosyn 40.3 22 0.00048 43.0 3.1 18 191-208 222-239 (424)
479 PRK10536 hypothetical protein; 40.3 14 0.00031 42.1 1.4 41 158-207 51-91 (262)
480 PF06637 PV-1: PV-1 protein (P 40.1 7.7E+02 0.017 30.0 17.2 35 598-632 359-393 (442)
481 COG1382 GimC Prefoldin, chaper 39.9 4.4E+02 0.0095 27.1 14.6 36 533-568 77-112 (119)
482 PF03148 Tektin: Tektin family 39.8 7.5E+02 0.016 29.8 17.6 19 411-429 200-218 (384)
483 PF14915 CCDC144C: CCDC144C pr 39.4 7.1E+02 0.015 29.4 22.8 21 455-475 59-79 (305)
484 PF02994 Transposase_22: L1 tr 39.4 82 0.0018 37.6 7.5 13 548-560 173-185 (370)
485 PF04642 DUF601: Protein of un 39.1 6.6E+02 0.014 29.0 14.0 49 397-445 102-157 (311)
486 PRK00888 ftsB cell division pr 38.9 1.7E+02 0.0037 29.1 8.4 35 57-91 28-62 (105)
487 KOG2077 JNK/SAPK-associated pr 38.7 1.5E+02 0.0033 37.3 9.5 18 69-86 53-70 (832)
488 KOG2685 Cystoskeletal protein 38.7 8.4E+02 0.018 30.0 18.7 43 593-635 279-321 (421)
489 COG4026 Uncharacterized protei 38.5 5.8E+02 0.013 29.0 13.0 8 399-406 58-65 (290)
490 PRK11889 flhF flagellar biosyn 38.4 25 0.00055 42.6 3.1 17 191-207 242-258 (436)
491 PF12325 TMF_TATA_bd: TATA ele 38.4 4.6E+02 0.0099 26.9 14.9 100 452-566 16-115 (120)
492 PHA00729 NTP-binding motif con 38.4 23 0.0005 39.6 2.6 29 180-208 7-35 (226)
493 PRK04406 hypothetical protein; 38.2 2.3E+02 0.0051 26.6 8.7 47 519-565 11-57 (75)
494 TIGR03752 conj_TIGR03752 integ 38.1 3.6E+02 0.0077 33.6 12.5 7 956-962 415-421 (472)
495 KOG2010 Double stranded RNA bi 38.1 1.7E+02 0.0037 34.5 9.3 79 488-566 123-201 (405)
496 PF05010 TACC: Transforming ac 38.0 6.2E+02 0.013 28.3 22.1 163 447-632 25-187 (207)
497 PF02841 GBP_C: Guanylate-bind 37.8 6.9E+02 0.015 28.8 15.3 106 448-553 186-297 (297)
498 KOG2264 Exostosin EXT1L [Signa 37.7 1.8E+02 0.004 36.6 9.9 74 501-574 82-155 (907)
499 PF08826 DMPK_coil: DMPK coile 37.7 3.2E+02 0.007 25.0 9.9 61 509-569 1-61 (61)
500 PF07106 TBPIP: Tat binding pr 37.6 1.4E+02 0.0029 31.6 8.1 61 501-561 75-137 (169)
No 1
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.3e-79 Score=740.62 Aligned_cols=349 Identities=33% Similarity=0.498 Sum_probs=295.5
Q ss_pred CCCEEEEEeeCCCCCCCC----CceEEeCC-CcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHh-hHHHHHHHhc
Q 001081 114 LGNIKVFCRTRPLFEDEG----PSVVEFTD-DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALD 187 (1162)
Q Consensus 114 lGnIrV~~RVRPl~~~E~----~s~V~~~d-~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~-V~PLV~svLd 187 (1162)
-.||+|+|||||+++.|. +.+|.+++ ..-|.+...-.+. .-.+.|+||+||+|.+.|++||+. |.|+|..|+.
T Consensus 48 ~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk-~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~ 126 (1041)
T KOG0243|consen 48 EVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASK-QIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLE 126 (1041)
T ss_pred CCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccc-cccceeecceeeCcchhHHHHHHHHHHHHHHHHhc
Confidence 389999999999998873 34666666 4447776652211 135899999999999999999997 6999999999
Q ss_pred CCceeEeeeccCCCCCcccccc--------CCCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCC
Q 001081 188 GYNVSIFAYGQTHSGKTHTMEG--------SSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQT 259 (1162)
Q Consensus 188 GyN~~IFAYGQTGSGKTyTM~G--------s~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~ 259 (1162)
|||||||||||||+||||||+| .+.+.|||||++.+||+.+... +.+|.|+|||+|+|||.++|||++.
T Consensus 127 GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~---~~EYsvKVSfLELYNEEl~DLLa~~ 203 (1041)
T KOG0243|consen 127 GYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQ---GAEYSVKVSFLELYNEELTDLLASE 203 (1041)
T ss_pred cCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhc---CCeEEEEEEehhhhhHHHHHhcCCc
Confidence 9999999999999999999999 5678999999999999988643 3689999999999999999999887
Q ss_pred CCCceEEee--c-------ccccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeec-cCC
Q 001081 260 GNGLAKIRL--Q-------SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNL-ITG 325 (1162)
Q Consensus 260 ~~~~~~i~~--~-------~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~-~tg 325 (1162)
.......++ + ....+.|+-+..|++..++.++|..|...|.++.|. |||||+||+|+|..... ..|
T Consensus 204 ~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~g 283 (1041)
T KOG0243|consen 204 DTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEG 283 (1041)
T ss_pred cccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcc
Confidence 653111221 1 123355899999999999999999999999998874 99999999999976543 233
Q ss_pred c--eeeeeeeEEecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCCCcccCCCCccccccccccCCCcceEE
Q 001081 326 E--NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLM 403 (1162)
Q Consensus 326 ~--~~~SKL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~~hVPYRdSKLTrLLqDSLGGNSkTvM 403 (1162)
+ ...|||+||||||||.+.++|+.+.|.+|++.||+||++||+||+||.++..|||||+|||||||||||||.+||+|
T Consensus 284 eelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~i 363 (1041)
T KOG0243|consen 284 EELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCI 363 (1041)
T ss_pred hhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEE
Confidence 3 34799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHhHHHHHhhhcccccCcchhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 404 IVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQ 481 (1162)
Q Consensus 404 Ia~ISPs~~n~eETLsTLrFAsRAr~I~~~i~n~~~ikk~k~i~~~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq 481 (1162)
|+||||+..+++||++||.||.||++|+++|..+... .+...+++|-.||++|+..|.++.++
T Consensus 364 IATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl---------------~K~~llKd~~~EIerLK~dl~AaReK 426 (1041)
T KOG0243|consen 364 IATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKL---------------MKKTLLKDLYEEIERLKRDLAAAREK 426 (1041)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHH---------------HHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 9999999999999999999999999998877653322 23445666777777777777666554
No 2
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-77 Score=713.14 Aligned_cols=345 Identities=32% Similarity=0.507 Sum_probs=300.5
Q ss_pred CCCEEEEEeeCCCCCCCC----CceEEeCCCcEEEEecCCCccCCCCceeeeceeeCCC-------CChHHHHHhh-HHH
Q 001081 114 LGNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPH-------VGQAELFSDV-QPF 181 (1162)
Q Consensus 114 lGnIrV~~RVRPl~~~E~----~s~V~~~d~~tI~v~~~~~~~~~~~k~F~FDkVF~~~-------asQeeVFe~V-~PL 181 (1162)
..+|+|.||||||+..|. .++|.+.++.+-.+++. .. .....|+||++||.+ ++|..||+++ .|+
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~-~~--k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~m 79 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPK-GS--KDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREM 79 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCC-Cc--ccCCceecceeeecCCCCCCchhhHHHHHHHHhHHH
Confidence 368999999999998874 24555555544444433 22 223459999999877 5799999998 899
Q ss_pred HHHHhcCCceeEeeeccCCCCCccccccCC--CCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccC-C
Q 001081 182 VQSALDGYNVSIFAYGQTHSGKTHTMEGSS--HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLP-Q 258 (1162)
Q Consensus 182 V~svLdGyN~~IFAYGQTGSGKTyTM~Gs~--~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~-~ 258 (1162)
++.+|+|||+||||||||||||||||+|.. +++|||||+|++||..+......+..|.|.|||+|||||+|+|||+ |
T Consensus 80 L~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p 159 (1221)
T KOG0245|consen 80 LDHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAP 159 (1221)
T ss_pred HHHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCC
Confidence 999999999999999999999999999976 8999999999999999998888889999999999999999999999 7
Q ss_pred CCCCceEEeecc--cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeecc--CC--cee
Q 001081 259 TGNGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI--TG--ENL 328 (1162)
Q Consensus 259 ~~~~~~~i~~~~--~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~--tg--~~~ 328 (1162)
...+..+++.+. +++|.+|+...|+|+.|+..+|..|.+.|++++|+ |||||+||+|.+.+.... ++ ...
T Consensus 160 ~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek 239 (1221)
T KOG0245|consen 160 KSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEK 239 (1221)
T ss_pred CCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCccee
Confidence 777777777653 57788999999999999999999999999999886 999999999999987542 33 457
Q ss_pred eeeeeEEecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcC-------CCCcccCCCCccccccccccCCCcce
Q 001081 329 YSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS-------RKDIVPYENSMLTKVLADSLGESSKT 401 (1162)
Q Consensus 329 ~SKL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~-------k~~hVPYRdSKLTrLLqDSLGGNSkT 401 (1162)
+|||+|||||||||+..+|+.|+|+|||.+|||||.+||.||+||++ +..+||||||.|||||+++|||||||
T Consensus 240 ~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKT 319 (1221)
T KOG0245|consen 240 VSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKT 319 (1221)
T ss_pred eeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchh
Confidence 89999999999999999999999999999999999999999999985 23599999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHhHHHHHhhhccccc-CcchhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 402 LMIVNICPNAANMSETLSSLNFSSRARSTVLSL-GNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEA 478 (1162)
Q Consensus 402 vMIa~ISPs~~n~eETLsTLrFAsRAr~I~~~i-~n~~~ikk~k~i~~~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~ 478 (1162)
+||+++||++-||+|||+|||||+|||+|++.. .|.+ .-.+.|++|++|+.+||..+...
T Consensus 320 aMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEd-----------------pnaKLIRELreEv~rLksll~~~ 380 (1221)
T KOG0245|consen 320 AMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNED-----------------PNAKLIRELREEVARLKSLLRAQ 380 (1221)
T ss_pred hhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCC-----------------ccHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999987543 2222 34678999999999999887543
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-77 Score=700.22 Aligned_cols=346 Identities=35% Similarity=0.516 Sum_probs=292.0
Q ss_pred CCEEEEEeeCCCCCCCCC----ceEEeC-CCcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHhh-HHHHHHHhcC
Q 001081 115 GNIKVFCRTRPLFEDEGP----SVVEFT-DDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDG 188 (1162)
Q Consensus 115 GnIrV~~RVRPl~~~E~~----s~V~~~-d~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~V-~PLV~svLdG 188 (1162)
.+|+||+|+||+...+.. .++.++ ....+.+.++......+.+.|+||.||+++++|++||+.+ .|+|++|++|
T Consensus 5 ~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~G 84 (574)
T KOG4280|consen 5 CKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLEG 84 (574)
T ss_pred cceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhcc
Confidence 579999999999876531 233332 3445566666555566678899999999999999999986 8999999999
Q ss_pred CceeEeeeccCCCCCccccccC-CCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCCCceEEe
Q 001081 189 YNVSIFAYGQTHSGKTHTMEGS-SHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIR 267 (1162)
Q Consensus 189 yN~~IFAYGQTGSGKTyTM~Gs-~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~~i~ 267 (1162)
||+||||||||||||||||.|+ ++..|||||+|++||..|+...... .|.|+|||+|||||.|+|||++.+.....++
T Consensus 85 yNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~-~f~vrvS~lEiYnE~i~DLL~~~~~~~l~lr 163 (574)
T KOG4280|consen 85 YNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKT-RFLVRVSYLEIYNESIRDLLSPVNPKGLELR 163 (574)
T ss_pred cCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccc-eEEEEeehHHHHhHHHHHHhCccCcCCceee
Confidence 9999999999999999999999 6779999999999999998654333 8999999999999999999999886555555
Q ss_pred ec--ccccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeec-cCC--ceeeeeeeEEecC
Q 001081 268 LQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNL-ITG--ENLYSKLSLVDLA 338 (1162)
Q Consensus 268 ~~--~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~-~tg--~~~~SKL~LVDLA 338 (1162)
.. .+.++.+++.+.|.+++++..+|..|..+|.++.+. |||||+||+|+|++... ..+ ....|+|+|||||
T Consensus 164 e~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDLa 243 (574)
T KOG4280|consen 164 EDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDLA 243 (574)
T ss_pred EcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeeecc
Confidence 44 345677999999999999999999999999998875 99999999999998332 222 3457999999999
Q ss_pred CCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCCC-cccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHH
Q 001081 339 GSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD-IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSET 417 (1162)
Q Consensus 339 GSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~~-hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~eET 417 (1162)
||||..+++++|+|++||.+||+||++||+||.+|.+++. ||||||||||+||||||||||+|+||+||+|+..+++||
T Consensus 244 gsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ET 323 (574)
T KOG4280|consen 244 GSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEET 323 (574)
T ss_pred chhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHH
Confidence 9999999999999999999999999999999999999776 999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHhhhcccccCcchhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 418 LSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKE 477 (1162)
Q Consensus 418 LsTLrFAsRAr~I~~~i~n~~~ikk~k~i~~~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~ 477 (1162)
++||+||+||+.|.+.+.- +. + ..+..+.+|+.||..|+.++..
T Consensus 324 lsTLrfA~Rak~I~nk~~i----ne------d------~~~~~~~~lq~ei~~Lk~~l~~ 367 (574)
T KOG4280|consen 324 LSTLRFAQRAKAIKNKPVI----NE------D------PKDALLRELQEEIERLKKELDP 367 (574)
T ss_pred HHHHHHHHHHHHhhccccc----cC------C------cchhhHHHHHHHHHHHHHhhcc
Confidence 9999999999998764322 11 1 1134555566666666655543
No 4
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=2.6e-75 Score=667.30 Aligned_cols=353 Identities=32% Similarity=0.469 Sum_probs=298.7
Q ss_pred CCCCEEEEEeeCCCCCCCC----CceEEeCC-CcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHhh-HHHHHHHh
Q 001081 113 KLGNIKVFCRTRPLFEDEG----PSVVEFTD-DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSAL 186 (1162)
Q Consensus 113 klGnIrV~~RVRPl~~~E~----~s~V~~~d-~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~V-~PLV~svL 186 (1162)
..++|+|+||+||.+..|. ..+..+.+ ..++.+..... .+.|.||+||.|+++|++||+.+ .|+|++|+
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~-----~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL 79 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKE-----TKTYVFDRVFSPNATQEDVYEFAAKPIVDDVL 79 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccc-----cccceeeeecCCCccHHHHHHHHHHHHHHHHh
Confidence 4589999999999987662 22333333 55666654332 27899999999999999999985 89999999
Q ss_pred cCCceeEeeeccCCCCCccccccCCC---CCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCCCc
Q 001081 187 DGYNVSIFAYGQTHSGKTHTMEGSSH---DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGL 263 (1162)
Q Consensus 187 dGyN~~IFAYGQTGSGKTyTM~Gs~~---d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~ 263 (1162)
.|||+||||||||||||||||.|..+ ..||+||++++||+.|... ..+.+|+|+|||||||+|+|+|||++.+.+.
T Consensus 80 ~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~-~~n~efhVkVsy~EIYmEKi~DLL~~~k~nl 158 (607)
T KOG0240|consen 80 LGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSM-EENLEFHVKVSYFEIYMEKIRDLLDPEKTNL 158 (607)
T ss_pred cccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcC-cccceEEEEEEeehhhhhHHHHHhCcccCCc
Confidence 99999999999999999999999766 5699999999999999854 3567999999999999999999999887665
Q ss_pred eEEeec-ccccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEecC
Q 001081 264 AKIRLQ-SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLA 338 (1162)
Q Consensus 264 ~~i~~~-~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~tg~~~~SKL~LVDLA 338 (1162)
...+.+ -..++.|++...|.++++++++++.|..+|+++.|+ |||||+||+|||.+.+..+.....|+|.|||||
T Consensus 159 svheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVDLa 238 (607)
T KOG0240|consen 159 SVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLVDLA 238 (607)
T ss_pred eeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhccccEEEEEcc
Confidence 444332 235677999999999999999999999999888765 999999999999999999999999999999999
Q ss_pred CCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCC-CCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHH
Q 001081 339 GSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR-KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSET 417 (1162)
Q Consensus 339 GSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k-~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~eET 417 (1162)
|||++.++|++|..+.|+.+||+||++||+||++|+++ +.|||||||||||||+|+|||||+|.+|+|++|+.-+..||
T Consensus 239 GSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET 318 (607)
T KOG0240|consen 239 GSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAET 318 (607)
T ss_pred cccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccccccc
Confidence 99999999999999999999999999999999999997 79999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHhhhcccccCcchhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 418 LSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLR 472 (1162)
Q Consensus 418 LsTLrFAsRAr~I~~~i~n~~~ikk~k~i~~~~~~el~~l~~eI~eLk~Ei~~Lr 472 (1162)
.+||+|++||+.|++.+..+. .........++.++.+....++..++.+...|+
T Consensus 319 ~STl~fg~rak~ikN~v~~n~-e~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~ 372 (607)
T KOG0240|consen 319 KSTLRFGNRAKTIKNTVWVNL-ELTAEEWKRKLEKKKDKNVALKEELEKLRNSLK 372 (607)
T ss_pred ccchhhccccccccchhhhhh-HhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 999999999999876543322 122233344444444555555555555555544
No 5
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=3.7e-75 Score=699.09 Aligned_cols=320 Identities=42% Similarity=0.632 Sum_probs=289.6
Q ss_pred CCEEEEEeeCCCCCCCCC---c-eEEeCCCcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHhhHHHHHHHhcCCc
Q 001081 115 GNIKVFCRTRPLFEDEGP---S-VVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYN 190 (1162)
Q Consensus 115 GnIrV~~RVRPl~~~E~~---s-~V~~~d~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN 190 (1162)
|||||||||||+.+++.. . ++..++...+.+..+........+.|.||+||+|.++|++||.++.|+|++|+||||
T Consensus 314 GnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDGYn 393 (670)
T KOG0239|consen 314 GNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLVQSALDGYN 393 (670)
T ss_pred cCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHHHHHHHHhcCcc
Confidence 999999999999988754 2 333333345666665554444445799999999999999999999999999999999
Q ss_pred eeEeeeccCCCCCcccccc-CCCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCC-CCceEEee
Q 001081 191 VSIFAYGQTHSGKTHTMEG-SSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG-NGLAKIRL 268 (1162)
Q Consensus 191 ~~IFAYGQTGSGKTyTM~G-s~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~-~~~~~i~~ 268 (1162)
+||||||||||||||||.| +++++|||||++++||..+..... +|.|.+.++|+|||||.|+|||++.. .....|..
T Consensus 394 VCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~-g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~ 472 (670)
T KOG0239|consen 394 VCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKS-GWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVD 472 (670)
T ss_pred eeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhcc-CceEEeeeehhHHHHHHHHHhccccccccceeEEE
Confidence 9999999999999999999 699999999999999999987766 99999999999999999999998874 44444444
Q ss_pred cc--cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEecCCCcc
Q 001081 269 QS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEG 342 (1162)
Q Consensus 269 ~~--~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~tg~~~~SKL~LVDLAGSER 342 (1162)
+. ...+.+++...|.+..++..+++.|..+|+++.|. |||||+||+++|...+..++....|+|+|||||||||
T Consensus 473 ~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER 552 (670)
T KOG0239|consen 473 DAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSER 552 (670)
T ss_pred cCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcccccccceeEeecccCcc
Confidence 32 45678999999999999999999999999998875 8999999999999999999999999999999999999
Q ss_pred cccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCCCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHHhH
Q 001081 343 LIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLN 422 (1162)
Q Consensus 343 ~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~eETLsTLr 422 (1162)
+.+++.+|+|++|+++||+||++||+||.||+.+..||||||||||+||+|+|||++||+|||+|||...++.||+++|+
T Consensus 553 ~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~ 632 (670)
T KOG0239|consen 553 VSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLR 632 (670)
T ss_pred cCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccccC
Q 001081 423 FSSRARSTVLSLG 435 (1162)
Q Consensus 423 FAsRAr~I~~~i~ 435 (1162)
||+|++.+.++..
T Consensus 633 FA~rv~~~~lG~a 645 (670)
T KOG0239|consen 633 FATRVRSVELGSA 645 (670)
T ss_pred hHHHhhceecccc
Confidence 9999999987543
No 6
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=8.1e-73 Score=637.20 Aligned_cols=313 Identities=32% Similarity=0.545 Sum_probs=279.2
Q ss_pred CEEEEEeeCCCCCCC----CCceEEeCCCcEEEEecCCCc--------cCCCCceeeeceeeCCCCChHHHHHhh-HHHH
Q 001081 116 NIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDT--------ISNPKKDFEFDRVYGPHVGQAELFSDV-QPFV 182 (1162)
Q Consensus 116 nIrV~~RVRPl~~~E----~~s~V~~~d~~tI~v~~~~~~--------~~~~~k~F~FDkVF~~~asQeeVFe~V-~PLV 182 (1162)
+|+|||||||+++.| ...++.+.++..+.+.++... .....+.|.||+||+++++|++||+.+ .|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 699999999999765 346788888777777654321 123458999999999999999999986 7999
Q ss_pred HHHhcCCceeEeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCCC
Q 001081 183 QSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNG 262 (1162)
Q Consensus 183 ~svLdGyN~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~ 262 (1162)
+++++|||+||||||||||||||||+|++.++||+||++++||+.++... ....|.|++||+|||||+|+|||++....
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~-~~~~~~v~vS~~EIyne~v~DLL~~~~~~ 159 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERK-DDKEFEVSLSYLEIYNETIRDLLSPSSGP 159 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcc-cCceEEEEEEEEEEECCEEEECCCCCCCC
Confidence 99999999999999999999999999999999999999999999887544 46789999999999999999999886443
Q ss_pred ceEEeecc--cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeecc---CCceeeeeee
Q 001081 263 LAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI---TGENLYSKLS 333 (1162)
Q Consensus 263 ~~~i~~~~--~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~---tg~~~~SKL~ 333 (1162)
..++.+. ...+.++++..|.+.+++..+++.|..+|+...+. |||||+||+|+|.+.+.. ......|+|+
T Consensus 160 -l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~ 238 (338)
T cd01370 160 -LELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLS 238 (338)
T ss_pred -ceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEE
Confidence 3444433 34567999999999999999999999999887764 899999999999988765 4556789999
Q ss_pred EEecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCC---CcccCCCCccccccccccCCCcceEEEEEeCCC
Q 001081 334 LVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK---DIVPYENSMLTKVLADSLGESSKTLMIVNICPN 410 (1162)
Q Consensus 334 LVDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~---~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs 410 (1162)
|||||||||..+++..|.+++|+.+||+||.+|++||.+|+.++ .|||||+||||+||+|+|||||+|+||+||||+
T Consensus 239 ~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~ 318 (338)
T cd01370 239 LIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPS 318 (338)
T ss_pred EEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCc
Confidence 99999999999999999999999999999999999999999877 899999999999999999999999999999999
Q ss_pred CCCHHHHHHHhHHHHHhhhc
Q 001081 411 AANMSETLSSLNFSSRARST 430 (1162)
Q Consensus 411 ~~n~eETLsTLrFAsRAr~I 430 (1162)
..+++||++||+||+||++|
T Consensus 319 ~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 319 SSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred hhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999875
No 7
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=1.8e-72 Score=685.72 Aligned_cols=342 Identities=30% Similarity=0.471 Sum_probs=288.9
Q ss_pred CCCEEEEEeeCCCCCCCC-CceEEeCCCcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHhh-HHHHHHHhcCCce
Q 001081 114 LGNIKVFCRTRPLFEDEG-PSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDGYNV 191 (1162)
Q Consensus 114 lGnIrV~~RVRPl~~~E~-~s~V~~~d~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~V-~PLV~svLdGyN~ 191 (1162)
.++|+|||||||++..|. ..++...++.++.+. .+.|.||+||+++++|++||+.+ .|+|+++++|||+
T Consensus 97 ds~VkV~VRVRPl~~~E~g~~iV~~~s~dsl~I~---------~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNa 167 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEEGEMIVQKMSNDSLTIN---------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNS 167 (1320)
T ss_pred CCCeEEEEEcCCCCCccCCCeeEEEcCCCeEEEe---------CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcc
Confidence 379999999999988763 334444555556553 26899999999999999999986 8999999999999
Q ss_pred eEeeeccCCCCCccccccCC----------CCCChHHHHHHHHHHhhccc----cccccccceeEEEEEEecchhccccC
Q 001081 192 SIFAYGQTHSGKTHTMEGSS----------HDRGLYARCFEELFDLSNSD----TTATARFNFAVTVFELYNEQLRELLP 257 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM~Gs~----------~d~GIIPRaledLF~~i~~~----~~~~~~f~V~VS~lEIYNE~V~DLL~ 257 (1162)
||||||||||||||||+|+. .++|||||++++||+.+... ......|.|+|||+|||||+|+|||+
T Consensus 168 TIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLs 247 (1320)
T PLN03188 168 SVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLD 247 (1320)
T ss_pred eeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceeccc
Confidence 99999999999999999963 56899999999999988642 23456799999999999999999998
Q ss_pred CCCCCceEEeec--ccccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeecc--CC--ce
Q 001081 258 QTGNGLAKIRLQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI--TG--EN 327 (1162)
Q Consensus 258 ~~~~~~~~i~~~--~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~--tg--~~ 327 (1162)
+..... .++.+ ...++.+++++.|.+.+++..+|..|..+|+++.|. |||||+||+|+|...... .+ ..
T Consensus 248 p~~k~L-~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~ 326 (1320)
T PLN03188 248 PSQKNL-QIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSF 326 (1320)
T ss_pred cccCCc-eEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcce
Confidence 865443 34333 334567999999999999999999999999888775 999999999999875432 22 24
Q ss_pred eeeeeeEEecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcC-----CCCcccCCCCccccccccccCCCcceE
Q 001081 328 LYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS-----RKDIVPYENSMLTKVLADSLGESSKTL 402 (1162)
Q Consensus 328 ~~SKL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~-----k~~hVPYRdSKLTrLLqDSLGGNSkTv 402 (1162)
..|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+. +..||||||||||+||+|+|||||+|+
T Consensus 327 r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTv 406 (1320)
T PLN03188 327 KTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLA 406 (1320)
T ss_pred EEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEE
Confidence 579999999999999999999999999999999999999999999974 457999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHhHHHHHhhhcccccCcchhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 403 MIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQAL 475 (1162)
Q Consensus 403 MIa~ISPs~~n~eETLsTLrFAsRAr~I~~~i~n~~~ikk~k~i~~~~~~el~~l~~eI~eLk~Ei~~Lr~~L 475 (1162)
|||||||...+++||++||+||+||+.|++.+..+... ...+..+.+.|.+|++|+.+|+...
T Consensus 407 MIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~----------~~~vn~LrelIr~Lk~EL~rLK~~~ 469 (1320)
T PLN03188 407 MVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVM----------QDDVNFLREVIRQLRDELQRVKANG 469 (1320)
T ss_pred EEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccch----------hhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998755322111 1123346678888999998888764
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=8e-72 Score=628.88 Aligned_cols=309 Identities=36% Similarity=0.496 Sum_probs=268.3
Q ss_pred CCEEEEEeeCCCCCCCC----CceEEeCCCcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHhh-HHHHHHHhcCC
Q 001081 115 GNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDGY 189 (1162)
Q Consensus 115 GnIrV~~RVRPl~~~E~----~s~V~~~d~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~V-~PLV~svLdGy 189 (1162)
++|+|||||||+...|. ..++...++.++.+... +.+.|.||+||+++++|++||+.+ .|+|+++++||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~------~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~ 74 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSH------PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGY 74 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCC------CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 48999999999988763 34555555555555432 247999999999999999999986 89999999999
Q ss_pred ceeEeeeccCCCCCccccccCCC--------CCChHHHHHHHHHHhhccc---cccccccceeEEEEEEecchhccccCC
Q 001081 190 NVSIFAYGQTHSGKTHTMEGSSH--------DRGLYARCFEELFDLSNSD---TTATARFNFAVTVFELYNEQLRELLPQ 258 (1162)
Q Consensus 190 N~~IFAYGQTGSGKTyTM~Gs~~--------d~GIIPRaledLF~~i~~~---~~~~~~f~V~VS~lEIYNE~V~DLL~~ 258 (1162)
|+||||||||||||||||+|+.. ++||+||++++||+.+... ......|.|++||+|||||+|+|||.+
T Consensus 75 n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~ 154 (337)
T cd01373 75 NGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDP 154 (337)
T ss_pred ceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCC
Confidence 99999999999999999999753 6899999999999987643 224567899999999999999999987
Q ss_pred CCCCceEEeec--ccccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccCC--ceeee
Q 001081 259 TGNGLAKIRLQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITG--ENLYS 330 (1162)
Q Consensus 259 ~~~~~~~i~~~--~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~tg--~~~~S 330 (1162)
..... .++.+ ....+.++++..|.+.+++.+++..|..+|..+.+. |||||+||+|+|...+...+ ....|
T Consensus 155 ~~~~l-~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s 233 (337)
T cd01373 155 TSRNL-KIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTS 233 (337)
T ss_pred CCCCc-eEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEE
Confidence 66543 34333 234566999999999999999999999999887664 89999999999987664433 34579
Q ss_pred eeeEEecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcC----CCCcccCCCCccccccccccCCCcceEEEEE
Q 001081 331 KLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS----RKDIVPYENSMLTKVLADSLGESSKTLMIVN 406 (1162)
Q Consensus 331 KL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~----k~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ 406 (1162)
+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+. +..|||||+||||+||+|+|||||+|+||+|
T Consensus 234 ~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~ 313 (337)
T cd01373 234 RLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIAN 313 (337)
T ss_pred EEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEE
Confidence 999999999999999999999999999999999999999999974 4689999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHhHHHHHhhhc
Q 001081 407 ICPNAANMSETLSSLNFSSRARST 430 (1162)
Q Consensus 407 ISPs~~n~eETLsTLrFAsRAr~I 430 (1162)
|||+..+++||++||+||+||+.|
T Consensus 314 vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 314 VSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred ECCCcccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999875
No 9
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=7e-71 Score=623.13 Aligned_cols=307 Identities=31% Similarity=0.493 Sum_probs=273.1
Q ss_pred CCEEEEEeeCCCCCCC----CCceEEeCCCcEEEEecCCCcc--------CCCCceeeeceeeCCCCChHHHHHhh-HHH
Q 001081 115 GNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTI--------SNPKKDFEFDRVYGPHVGQAELFSDV-QPF 181 (1162)
Q Consensus 115 GnIrV~~RVRPl~~~E----~~s~V~~~d~~tI~v~~~~~~~--------~~~~k~F~FDkVF~~~asQeeVFe~V-~PL 181 (1162)
.+|+|||||||+.+.| ...++.+.++.+|.+.++.... ....+.|.||+||+++++|++||+.+ .|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~ 80 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPL 80 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHH
Confidence 3799999999998875 3467888889999988765421 23468999999999999999999985 899
Q ss_pred HHHHhcCCceeEeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCC
Q 001081 182 VQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN 261 (1162)
Q Consensus 182 V~svLdGyN~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~ 261 (1162)
|+++++|||+||||||||||||||||+|++.++||+||++++||+.+.. |.|.+||+|||||+|+|||.+...
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~-------~~v~~S~~EIyne~v~DLL~~~~~ 153 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG-------YSVFVSYVEIYNNYIYDLLEDSPS 153 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh-------eeEEEEEEEEeCCEeEeCCCCccc
Confidence 9999999999999999999999999999999999999999999998763 899999999999999999987653
Q ss_pred C-----ceEEeecc--cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccC------
Q 001081 262 G-----LAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT------ 324 (1162)
Q Consensus 262 ~-----~~~i~~~~--~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~t------ 324 (1162)
. ...++.+. ...+.+++++.|.+.+++..++..|.++|..+.+. |||||+||+|++.+.+...
T Consensus 154 ~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~ 233 (345)
T cd01368 154 STKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQ 233 (345)
T ss_pred cccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCccccccc
Confidence 2 23444433 23466899999999999999999999999887764 8999999999998875432
Q ss_pred --CceeeeeeeEEecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcC------CCCcccCCCCccccccccccC
Q 001081 325 --GENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS------RKDIVPYENSMLTKVLADSLG 396 (1162)
Q Consensus 325 --g~~~~SKL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~------k~~hVPYRdSKLTrLLqDSLG 396 (1162)
+....|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|.. +..|||||+||||+||+|+||
T Consensus 234 ~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~ 313 (345)
T cd01368 234 DKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFD 313 (345)
T ss_pred CCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcC
Confidence 345679999999999999999999999999999999999999999999986 568999999999999999999
Q ss_pred CCcceEEEEEeCCCCCCHHHHHHHhHHHHHhh
Q 001081 397 ESSKTLMIVNICPNAANMSETLSSLNFSSRAR 428 (1162)
Q Consensus 397 GNSkTvMIa~ISPs~~n~eETLsTLrFAsRAr 428 (1162)
|||+|+||+||||+..+++||++||+||++|+
T Consensus 314 g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 314 GEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999985
No 10
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.8e-71 Score=667.48 Aligned_cols=349 Identities=32% Similarity=0.490 Sum_probs=290.1
Q ss_pred CCEEEEEeeCCCCCCC----CCceEEeCCCcEEEEecCCCc-cCCCCceeeeceeeCCCCChHHHHHh-hHHHHHHHhcC
Q 001081 115 GNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDT-ISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALDG 188 (1162)
Q Consensus 115 GnIrV~~RVRPl~~~E----~~s~V~~~d~~tI~v~~~~~~-~~~~~k~F~FDkVF~~~asQeeVFe~-V~PLV~svLdG 188 (1162)
.+|.|+|||||+.+.+ ..+.+...++..+........ .......|.||+||+++++|++||+. ++|+|.+|++|
T Consensus 6 ~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G 85 (675)
T KOG0242|consen 6 EKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEG 85 (675)
T ss_pred ceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhcC
Confidence 4799999999998863 223344445555444332110 00114889999999999999999997 69999999999
Q ss_pred CceeEeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCCCceEEee
Q 001081 189 YNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL 268 (1162)
Q Consensus 189 yN~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~~i~~ 268 (1162)
||++|||||||||||||||.|...+|||+|+++.+||+.+.... ...|.|.|||+|||||.|+|||++++... .++.
T Consensus 86 ~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~--~r~f~v~vSYlEIYNE~I~DLL~~~~~~L-~irE 162 (675)
T KOG0242|consen 86 FNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSG--EREFSVRVSYLEIYNERIRDLLNPDGGDL-RLRE 162 (675)
T ss_pred cccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcC--CceeEEEEEEEEEeccccccccCCCCCCc-eEeE
Confidence 99999999999999999999999999999999999999998654 78999999999999999999999988764 3443
Q ss_pred cc--cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEecCCCcc
Q 001081 269 QS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEG 342 (1162)
Q Consensus 269 ~~--~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~tg~~~~SKL~LVDLAGSER 342 (1162)
+. ...+.+++++.|.+.+++..+|..|..+|+++.|. |||||+||+|.|.+....... ..|+|+|||||||||
T Consensus 163 D~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~-~~s~L~lIDLAGSER 241 (675)
T KOG0242|consen 163 DSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASS-RVSKLNLIDLAGSER 241 (675)
T ss_pred cCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccc-hhheehhhhhhhhhh
Confidence 33 44567999999999999999999999999998775 999999999999988754432 778999999999999
Q ss_pred cccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCC--CCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHH
Q 001081 343 LIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR--KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSS 420 (1162)
Q Consensus 343 ~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k--~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~eETLsT 420 (1162)
+.++++.|.|++||.+||+||++||+||++|+.+ ..||||||||||||||++||||++|+|||||+|...+|+||.+|
T Consensus 242 as~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nT 321 (675)
T KOG0242|consen 242 ASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNT 321 (675)
T ss_pred hhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHH
Confidence 9999999999999999999999999999999986 46999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhcccccCcchhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 421 LNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQAL 475 (1162)
Q Consensus 421 LrFAsRAr~I~~~i~n~~~ikk~k~i~~~~~~el~~l~~eI~eLk~Ei~~Lr~~L 475 (1162)
|+||+||++|.+.+..+.... .+.+. ..++.+|..|+.++..++...
T Consensus 322 L~fAsrak~i~~~~~~n~~~~-~~~~~-------~~~~~~i~~l~~e~~~~~~~~ 368 (675)
T KOG0242|consen 322 LKFASRAKEITTKAQVNVILS-DKALL-------KYLQREIAELEAELERLKKKL 368 (675)
T ss_pred HHHHHHhhhcccccccceecc-hhhhh-------HHHHHHHHHHHHHHHhhcccc
Confidence 999999999987553322111 11111 122456666666666655443
No 11
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-70 Score=639.83 Aligned_cols=393 Identities=31% Similarity=0.453 Sum_probs=318.7
Q ss_pred CCEEEEEeeCCCCCCCC----CceEEeCCCcEEEEecCCC---ccCCCCceeeeceeeCCC-------CChHHHHHhh-H
Q 001081 115 GNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDD---TISNPKKDFEFDRVYGPH-------VGQAELFSDV-Q 179 (1162)
Q Consensus 115 GnIrV~~RVRPl~~~E~----~s~V~~~d~~tI~v~~~~~---~~~~~~k~F~FDkVF~~~-------asQeeVFe~V-~ 179 (1162)
.+|||.|||||++..|- .+++++....+|...++.. ...+++++|.||++|++. ++|+.||+.+ .
T Consensus 4 ~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~ 83 (1714)
T KOG0241|consen 4 AKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLGE 83 (1714)
T ss_pred cceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcch
Confidence 57999999999998773 4677776666555444322 223567999999999876 5799999998 6
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCC
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQT 259 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~ 259 (1162)
-+|+++|+|||+||||||||||||||||+|..++||||||+++.||..|.....+...|.|.|||+|||||++||||+|.
T Consensus 84 ~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdPk 163 (1714)
T KOG0241|consen 84 GILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDPK 163 (1714)
T ss_pred HHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCCC
Confidence 79999999999999999999999999999999999999999999999999888889999999999999999999999998
Q ss_pred CCC-ceEEeecc--cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeec--cCC--cee
Q 001081 260 GNG-LAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNL--ITG--ENL 328 (1162)
Q Consensus 260 ~~~-~~~i~~~~--~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~--~tg--~~~ 328 (1162)
++. ..+++.++ +.++.||.+..|+|++++..++..|.++|+++.++ |+|||+||.+.|.+.-. .+| ...
T Consensus 164 ~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~SgeK 243 (1714)
T KOG0241|consen 164 GSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGEK 243 (1714)
T ss_pred CCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchhh
Confidence 754 34455443 45677999999999999999999999999998876 88999999999988632 222 346
Q ss_pred eeeeeEEecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcC------CCCcccCCCCccccccccccCCCcceE
Q 001081 329 YSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS------RKDIVPYENSMLTKVLADSLGESSKTL 402 (1162)
Q Consensus 329 ~SKL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~------k~~hVPYRdSKLTrLLqDSLGGNSkTv 402 (1162)
.|+|.|||||||||+.++++.|.|++|+.+||+||.+||.||++|++ +..+||||||.||+||+|+|||||+|+
T Consensus 244 vsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTv 323 (1714)
T KOG0241|consen 244 VSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTV 323 (1714)
T ss_pred eeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCceeE
Confidence 79999999999999999999999999999999999999999999986 246999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHhHHHHHhhhcccc-cCcchhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 403 MIVNICPNAANMSETLSSLNFSSRARSTVLS-LGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQ 481 (1162)
Q Consensus 403 MIa~ISPs~~n~eETLsTLrFAsRAr~I~~~-i~n~~~ikk~k~i~~~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq 481 (1162)
||+||||+..||+||++|||||.|||.|++. ..|. ++...-|++|++|++.|+..|..++..
T Consensus 324 MiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNe-----------------dpnarvirElReEve~lr~qL~~ae~~ 386 (1714)
T KOG0241|consen 324 MIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNE-----------------DPNARVIRELREEVEKLREQLEQAEAM 386 (1714)
T ss_pred EEEEecccccchHHHHHHHHHHHHHHHhhccccccC-----------------CchHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999999999999999999998742 1121 233566788888888888888764322
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 482 -CVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQL 531 (1162)
Q Consensus 482 -~~~l~~Elqk~~k~~~elq~~Lk~e~~~L~~k~k~~kEe~~qL~~ql~ql 531 (1162)
.-.+.+.+++..+.+. +-..-|++++....+.+.+.++++..+
T Consensus 387 ~~~el~e~l~esekli~-------ei~~twEEkl~ktE~in~erq~~L~~~ 430 (1714)
T KOG0241|consen 387 KLPELKEKLEESEKLIK-------EITVTWEEKLRKTEEINQERQAQLESM 430 (1714)
T ss_pred cchHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2122222333333333 333445555555555555555554443
No 12
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1.5e-69 Score=606.95 Aligned_cols=306 Identities=31% Similarity=0.453 Sum_probs=271.1
Q ss_pred CCEEEEEeeCCCCCCCC----CceEEeCCCcEEEEecCCCccC----CCCceeeeceeeCCCCChHHHHHh-hHHHHHHH
Q 001081 115 GNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDDTIS----NPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSA 185 (1162)
Q Consensus 115 GnIrV~~RVRPl~~~E~----~s~V~~~d~~tI~v~~~~~~~~----~~~k~F~FDkVF~~~asQeeVFe~-V~PLV~sv 185 (1162)
++|+|||||||+.+.|. ..++.+.++.+|.+..+..... ...+.|+||+||+++++|++||+. +.|+|+++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 48999999999998773 4667777767888876543211 125789999999999999999998 58999999
Q ss_pred hcCCceeEeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCCCceE
Q 001081 186 LDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAK 265 (1162)
Q Consensus 186 LdGyN~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~~ 265 (1162)
++|||+||||||||||||||||+|+..++||+||++++||+.+.... ..|.|++||+|||||+++|||++.. ...
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~---~~~~v~~S~~EIy~e~v~DLL~~~~--~l~ 155 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN---DDLGVTVSFFEIYGGKLFDLLNDRK--RLS 155 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc---cccEEEEEEEeeecCchhhhccCcc--cee
Confidence 99999999999999999999999999999999999999999887543 6899999999999999999998733 234
Q ss_pred Eeecc--cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEecCC
Q 001081 266 IRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAG 339 (1162)
Q Consensus 266 i~~~~--~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~tg~~~~SKL~LVDLAG 339 (1162)
++.+. ...+.++++..|.+++++..++..|..+|..+.+. |||||+||+|++.+.+. ....|+|+||||||
T Consensus 156 i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---~~~~s~l~~vDLAG 232 (322)
T cd01367 156 VLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---NKLLGKLSFIDLAG 232 (322)
T ss_pred EEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---CeeEEEEEEeecCC
Confidence 44332 33566899999999999999999999999887764 89999999999998764 45689999999999
Q ss_pred CcccccCC-CcchhHHHHHHHhHhhHHHHHHHHhhcCCCCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHH
Q 001081 340 SEGLIAED-DSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETL 418 (1162)
Q Consensus 340 SER~~ks~-a~G~RlkEa~~INkSLsaLg~VIsALs~k~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~eETL 418 (1162)
|||...++ ..|.+++|+.+||+||++|++||.+|+.++.||||||||||+||+|+|||||+|+||+||||...+++||+
T Consensus 233 sE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl 312 (322)
T cd01367 233 SERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTL 312 (322)
T ss_pred ccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHH
Confidence 99998765 57899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHhh
Q 001081 419 SSLNFSSRAR 428 (1162)
Q Consensus 419 sTLrFAsRAr 428 (1162)
+||+||+|+|
T Consensus 313 ~tL~fa~r~k 322 (322)
T cd01367 313 NTLRYADRVK 322 (322)
T ss_pred HHHHHHHhhC
Confidence 9999999985
No 13
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=4e-69 Score=610.67 Aligned_cols=319 Identities=33% Similarity=0.516 Sum_probs=280.0
Q ss_pred CCEEEEEeeCCCCCCCC----CceEEeCCCcEEEEecCCC--ccCCCCceeeeceeeCCC-------CChHHHHHhh-HH
Q 001081 115 GNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDD--TISNPKKDFEFDRVYGPH-------VGQAELFSDV-QP 180 (1162)
Q Consensus 115 GnIrV~~RVRPl~~~E~----~s~V~~~d~~tI~v~~~~~--~~~~~~k~F~FDkVF~~~-------asQeeVFe~V-~P 180 (1162)
+||+||||+||++..|. ..++.+++ ..+.+.++.. ......+.|.||+||+++ ++|++||+.+ .|
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~-~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p 79 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPG-KVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRE 79 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECC-CEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHH
Confidence 58999999999987662 35666666 6777766542 112345899999999999 9999999985 89
Q ss_pred HHHHHhcCCceeEeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCC
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG 260 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~ 260 (1162)
+|+++++|||+||||||||||||||||+|+..++||+||++++||+.+.........|.|++||+|||||+|+|||++..
T Consensus 80 ~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~ 159 (356)
T cd01365 80 LLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKK 159 (356)
T ss_pred HHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCc
Confidence 99999999999999999999999999999999999999999999999887665567899999999999999999998874
Q ss_pred --CCceEEeecc--cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeecc----CCcee
Q 001081 261 --NGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI----TGENL 328 (1162)
Q Consensus 261 --~~~~~i~~~~--~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~----tg~~~ 328 (1162)
.....++.+. ...+.+++++.|.+.+++..++..|.++|..+.++ |||||+||+|++.+.... .....
T Consensus 160 ~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~ 239 (356)
T cd01365 160 KNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEK 239 (356)
T ss_pred cCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceE
Confidence 2233444332 33466999999999999999999999999877664 899999999999987654 34567
Q ss_pred eeeeeEEecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCC--------CCcccCCCCccccccccccCCCcc
Q 001081 329 YSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR--------KDIVPYENSMLTKVLADSLGESSK 400 (1162)
Q Consensus 329 ~SKL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k--------~~hVPYRdSKLTrLLqDSLGGNSk 400 (1162)
.|+|+|||||||||..+++..|.+++|+..||+||++|++||.+|+.. +.|||||+||||+||+|+||||++
T Consensus 240 ~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~ 319 (356)
T cd01365 240 VSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSK 319 (356)
T ss_pred EEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCce
Confidence 899999999999999999999999999999999999999999999863 589999999999999999999999
Q ss_pred eEEEEEeCCCCCCHHHHHHHhHHHHHhhhccccc
Q 001081 401 TLMIVNICPNAANMSETLSSLNFSSRARSTVLSL 434 (1162)
Q Consensus 401 TvMIa~ISPs~~n~eETLsTLrFAsRAr~I~~~i 434 (1162)
|+||+||+|...+++||++||+||+|+++|++.+
T Consensus 320 t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~ 353 (356)
T cd01365 320 TAMIATISPADINYEETLSTLRYADRAKKIVNVA 353 (356)
T ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHHhhccCcc
Confidence 9999999999999999999999999999988654
No 14
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=2.3e-68 Score=599.57 Aligned_cols=314 Identities=36% Similarity=0.543 Sum_probs=277.7
Q ss_pred CCEEEEEeeCCCCCCCC----CceEEe-CCCcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHh-hHHHHHHHhcC
Q 001081 115 GNIKVFCRTRPLFEDEG----PSVVEF-TDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALDG 188 (1162)
Q Consensus 115 GnIrV~~RVRPl~~~E~----~s~V~~-~d~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~-V~PLV~svLdG 188 (1162)
.||+|||||||+++.|. ..++.. +++.+|.+.++........+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 47999999999987663 345554 4667888877765445567899999999999999999998 58999999999
Q ss_pred CceeEeeeccCCCCCccccccCCC---CCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCCCceE
Q 001081 189 YNVSIFAYGQTHSGKTHTMEGSSH---DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAK 265 (1162)
Q Consensus 189 yN~~IFAYGQTGSGKTyTM~Gs~~---d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~~ 265 (1162)
||+||||||||||||||||+|+.. ++|||||++++||+.+.... ...|.|.+||+|||||+|+|||.+.......
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~--~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~ 158 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAE--NVQFLVRVSYLEIYNEEVRDLLGKDQKKKLE 158 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhcc--CccEEEEEEEEEeeCCeeeeCCCCCCCCcee
Confidence 999999999999999999999887 89999999999999887544 3789999999999999999999887644444
Q ss_pred Eeecc--cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeecc---CCceeeeeeeEEe
Q 001081 266 IRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI---TGENLYSKLSLVD 336 (1162)
Q Consensus 266 i~~~~--~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~---tg~~~~SKL~LVD 336 (1162)
++... ...+.+++++.|.+.+++..++..|.++|..+.+. |||||+||+|+|.+.+.. .+....|+|+|||
T Consensus 159 i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VD 238 (333)
T cd01371 159 LKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVD 238 (333)
T ss_pred EEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEE
Confidence 44433 34467999999999999999999999999877654 899999999999988764 3345679999999
Q ss_pred cCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCCC-cccCCCCccccccccccCCCcceEEEEEeCCCCCCHH
Q 001081 337 LAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD-IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMS 415 (1162)
Q Consensus 337 LAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~~-hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~e 415 (1162)
||||||..+++..|.+++|+..||+||.+|++||.+|..++. |||||+||||+||+|+|||||+|+||+||+|...+++
T Consensus 239 LAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~ 318 (333)
T cd01371 239 LAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYD 318 (333)
T ss_pred CCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHH
Confidence 999999999999999999999999999999999999998775 9999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHhhhc
Q 001081 416 ETLSSLNFSSRARST 430 (1162)
Q Consensus 416 ETLsTLrFAsRAr~I 430 (1162)
||++||+||+|||+|
T Consensus 319 eTl~TL~fa~r~r~I 333 (333)
T cd01371 319 ETLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHHHhhcC
Confidence 999999999999875
No 15
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=2.2e-68 Score=597.13 Aligned_cols=309 Identities=38% Similarity=0.591 Sum_probs=279.9
Q ss_pred CCEEEEEeeCCCCCCC----CCceEEeCCCcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHhh-HHHHHHHhcCC
Q 001081 115 GNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDGY 189 (1162)
Q Consensus 115 GnIrV~~RVRPl~~~E----~~s~V~~~d~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~V-~PLV~svLdGy 189 (1162)
.+|+|+||+||+.+.| ..+++.+.++.+|.+.++. ..+.|.||+||+++++|++||+.+ .|+|+++++||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~-----~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~ 76 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSD-----DGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGY 76 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCCC-----CceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 4799999999998876 4578888888888887652 348999999999999999999985 99999999999
Q ss_pred ceeEeeeccCCCCCccccccCCC---CCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCCCceEE
Q 001081 190 NVSIFAYGQTHSGKTHTMEGSSH---DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 266 (1162)
Q Consensus 190 N~~IFAYGQTGSGKTyTM~Gs~~---d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~~i 266 (1162)
|+||||||||||||||||+|+.. ++||+||++++||+.+... ....+|.|++||+|||||.++|||++..... .+
T Consensus 77 n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~-~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l-~i 154 (325)
T cd01369 77 NGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSM-DENLEFHVKVSYLEIYMEKIRDLLDVSKDNL-QV 154 (325)
T ss_pred cceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhc-cCCceEEEEEEEEEEECCChhhcccCccCCc-eE
Confidence 99999999999999999999987 8999999999999988754 3456899999999999999999998875543 33
Q ss_pred eec--ccccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEecCCC
Q 001081 267 RLQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGS 340 (1162)
Q Consensus 267 ~~~--~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~tg~~~~SKL~LVDLAGS 340 (1162)
+.. ....+.+++++.|.+.+++..++..|..+|....+. |||||+||+|+|.+.+..++....|+|+|||||||
T Consensus 155 ~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDLAGs 234 (325)
T cd01369 155 HEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAGS 234 (325)
T ss_pred EEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEECCCC
Confidence 332 234466999999999999999999999999877653 89999999999999887777788999999999999
Q ss_pred cccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCC-CcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHH
Q 001081 341 EGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK-DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLS 419 (1162)
Q Consensus 341 ER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~-~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~eETLs 419 (1162)
||..+++++|.+++|+..||+||.+|++||.+|.+++ .|||||+||||+||+|+|||||+|+||+||||...+++||++
T Consensus 235 E~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~ 314 (325)
T cd01369 235 EKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLS 314 (325)
T ss_pred CcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHH
Confidence 9999999999999999999999999999999999977 999999999999999999999999999999999999999999
Q ss_pred HhHHHHHhhhc
Q 001081 420 SLNFSSRARST 430 (1162)
Q Consensus 420 TLrFAsRAr~I 430 (1162)
||+||+||++|
T Consensus 315 TL~~a~r~~~i 325 (325)
T cd01369 315 TLRFGARAKTI 325 (325)
T ss_pred HHHHHHHhhcC
Confidence 99999999875
No 16
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=3.4e-68 Score=595.05 Aligned_cols=305 Identities=32% Similarity=0.525 Sum_probs=269.3
Q ss_pred CEEEEEeeCCCCCCCC--CceEEeCCC-----cEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHh-hHHHHHHHhc
Q 001081 116 NIKVFCRTRPLFEDEG--PSVVEFTDD-----CTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALD 187 (1162)
Q Consensus 116 nIrV~~RVRPl~~~E~--~s~V~~~d~-----~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~-V~PLV~svLd 187 (1162)
||+|||||||+.+.|. ..++...++ ..|.+.++.. ....+.|.||+||+++++|++||+. +.|+|+++++
T Consensus 1 ~i~V~vRvRP~~~~e~~~~~~v~~~~~~~~~~~~v~~~~~~~--~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~ 78 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSSSCVRGIDSDQGQAKSVEIENPRN--RGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLS 78 (319)
T ss_pred CcEEEEEeCcCCccccCCCceEEEeCCCCCcceEEEEeCCCC--CCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhC
Confidence 6999999999987763 345555433 4666665532 2345899999999999999999998 6999999999
Q ss_pred CCceeEeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCCCceEEe
Q 001081 188 GYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIR 267 (1162)
Q Consensus 188 GyN~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~~i~ 267 (1162)
|||+||||||||||||||||+|+..++||+||++++||+.+... ...|.|.+||+|||||.|+|||.+..... .++
T Consensus 79 G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~---~~~~~v~~S~~EIy~e~v~DLL~~~~~~l-~i~ 154 (319)
T cd01376 79 GQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQ---AWTGAFSMSYYEIYNEKVYDLLEPAKKEL-PIR 154 (319)
T ss_pred CCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhc---cccceEEEEEEEEECCEeeEccCCCCCCc-eEE
Confidence 99999999999999999999999999999999999999977643 36799999999999999999998865443 333
Q ss_pred ec--ccccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEecCCCc
Q 001081 268 LQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSE 341 (1162)
Q Consensus 268 ~~--~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~tg~~~~SKL~LVDLAGSE 341 (1162)
.. ....+.++++..|.+.+++..++..|.++|..+.+. |||||+||+|+|.+.+. .....|+|+||||||||
T Consensus 155 ~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~--~~~~~s~l~~VDLAGsE 232 (319)
T cd01376 155 EDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS--NIQLEGKLNLIDLAGSE 232 (319)
T ss_pred EcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC--CceEEEEEEEEECCCCC
Confidence 33 234567999999999999999999999999877654 89999999999988754 23578999999999999
Q ss_pred ccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCCCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHHh
Q 001081 342 GLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSL 421 (1162)
Q Consensus 342 R~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~eETLsTL 421 (1162)
|..+++.+|.+++|+..||+||.+|++||.+|..+..|||||+||||+||+|+|||||+|+||+||||...+++||++||
T Consensus 233 ~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL 312 (319)
T cd01376 233 DNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTL 312 (319)
T ss_pred cccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 001081 422 NFSSRAR 428 (1162)
Q Consensus 422 rFAsRAr 428 (1162)
+||+|||
T Consensus 313 ~fa~r~~ 319 (319)
T cd01376 313 NFASRSK 319 (319)
T ss_pred HHHHhhC
Confidence 9999985
No 17
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=4.4e-68 Score=594.16 Aligned_cols=306 Identities=34% Similarity=0.537 Sum_probs=274.3
Q ss_pred CEEEEEeeCCCCCCC---CCceEEeCCCcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHhh-HHHHHHHhcCCce
Q 001081 116 NIKVFCRTRPLFEDE---GPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDGYNV 191 (1162)
Q Consensus 116 nIrV~~RVRPl~~~E---~~s~V~~~d~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~V-~PLV~svLdGyN~ 191 (1162)
||+||||+||+...| ..+++.++++.+|.+.++ ...+.|.||+||+++++|++||+.+ .|+|+++++|||+
T Consensus 1 ~V~V~vRvRP~~~~e~~~~~~~~~~~~~~~v~~~~~-----~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~ 75 (321)
T cd01374 1 KIKVSVRVRPLNPRESDNEQVAWSIDNDNTISLEES-----TPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNG 75 (321)
T ss_pred CeEEEEEcCcCCcccccCCcceEEECCCCEEEEcCC-----CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCce
Confidence 699999999998875 346677777767777654 3358999999999999999999985 8999999999999
Q ss_pred eEeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCCCceEEeecc-
Q 001081 192 SIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQS- 270 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~~i~~~~- 270 (1162)
||||||||||||||||+|+..++||+||++++||+.+.... +..|.|++||+|||||+|+|||.+..... .+..+.
T Consensus 76 ~i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~--~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l-~i~~~~~ 152 (321)
T cd01374 76 TIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTP--DREFLLRVSYLEIYNEKIKDLLSPSPQEL-RIREDPN 152 (321)
T ss_pred eEEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhccc--CceEEEEEEEEEEEcCEeEEccCCCCCCc-eEEECCC
Confidence 99999999999999999999999999999999999886543 56899999999999999999999886443 333332
Q ss_pred -cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccC---CceeeeeeeEEecCCCcc
Q 001081 271 -LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT---GENLYSKLSLVDLAGSEG 342 (1162)
Q Consensus 271 -~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~t---g~~~~SKL~LVDLAGSER 342 (1162)
...+.+++++.|.+++++..++..|.++|..+.+. |||||+||+|+|.+.+... +....|+|+|||||||||
T Consensus 153 ~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~ 232 (321)
T cd01374 153 KGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSER 232 (321)
T ss_pred CCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCc
Confidence 34567999999999999999999999999877654 8999999999999887654 556789999999999999
Q ss_pred cccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCC--CcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHH
Q 001081 343 LIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK--DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSS 420 (1162)
Q Consensus 343 ~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~--~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~eETLsT 420 (1162)
..+.+ .+.+++|+.+||+||.+|++||.+|+.++ .|||||+||||+||+|+||||++|+||+||||...+++||++|
T Consensus 233 ~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~T 311 (321)
T cd01374 233 ASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNT 311 (321)
T ss_pred cccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHH
Confidence 99988 89999999999999999999999999985 9999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhc
Q 001081 421 LNFSSRARST 430 (1162)
Q Consensus 421 LrFAsRAr~I 430 (1162)
|+||+|+++|
T Consensus 312 L~~a~r~~~i 321 (321)
T cd01374 312 LKFASRAKKV 321 (321)
T ss_pred HHHHHHHhcC
Confidence 9999999875
No 18
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=8.3e-68 Score=593.10 Aligned_cols=314 Identities=45% Similarity=0.696 Sum_probs=284.6
Q ss_pred CCEEEEEeeCCCCCCC---CCceEEeCCC--cEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHhhHHHHHHHhcCC
Q 001081 115 GNIKVFCRTRPLFEDE---GPSVVEFTDD--CTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGY 189 (1162)
Q Consensus 115 GnIrV~~RVRPl~~~E---~~s~V~~~d~--~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~V~PLV~svLdGy 189 (1162)
|+|+||||+||+...| ..+++.++++ .+|.+..+ ....+.|.||+||+++++|++||+.+.|+|+++++|+
T Consensus 2 ~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~f~fD~vf~~~~~q~~v~~~v~p~v~~~~~G~ 77 (329)
T cd01366 2 GNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKG----TGKKKSFSFDRVFDPDASQEDVFEEVSPLVQSALDGY 77 (329)
T ss_pred CCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCC----CCCceEEecCEEECCCCCHHHHHHHHHHHHHHHhCCC
Confidence 8999999999998886 4567777666 77777654 2334899999999999999999999999999999999
Q ss_pred ceeEeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCC--CCceEEe
Q 001081 190 NVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG--NGLAKIR 267 (1162)
Q Consensus 190 N~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~--~~~~~i~ 267 (1162)
|+||||||+|||||||||+|+..++||+||++++||+.+......+..|.|.+||+|||||+++|||.+.. .....++
T Consensus 78 ~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~ 157 (329)
T cd01366 78 NVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIK 157 (329)
T ss_pred ceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEE
Confidence 99999999999999999999999999999999999998887665578999999999999999999999873 3334444
Q ss_pred ecc--cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEecCCCc
Q 001081 268 LQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSE 341 (1162)
Q Consensus 268 ~~~--~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~tg~~~~SKL~LVDLAGSE 341 (1162)
.+. ...+.+++++.|.+++++..++..|.++|....+. |||||+||+|+|.+.+..++....|+|+||||||||
T Consensus 158 ~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~VDLaGsE 237 (329)
T cd01366 158 HDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLAGSE 237 (329)
T ss_pred ECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEEECCCCc
Confidence 433 33466899999999999999999999999877653 899999999999998887788889999999999999
Q ss_pred ccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCCCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHHh
Q 001081 342 GLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSL 421 (1162)
Q Consensus 342 R~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~eETLsTL 421 (1162)
+..+.++.|.+++|+..||+||.+|++||.+|+.+..|||||+||||+||+|+|||+++|+||+||||...+++||++||
T Consensus 238 ~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL 317 (329)
T cd01366 238 RLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSL 317 (329)
T ss_pred ccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccc
Q 001081 422 NFSSRARSTVL 432 (1162)
Q Consensus 422 rFAsRAr~I~~ 432 (1162)
+||+|+++|++
T Consensus 318 ~~a~~~~~i~~ 328 (329)
T cd01366 318 RFASRVRSVEL 328 (329)
T ss_pred HHHHHhhcccC
Confidence 99999999864
No 19
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.2e-67 Score=597.49 Aligned_cols=316 Identities=35% Similarity=0.498 Sum_probs=275.9
Q ss_pred CCEEEEEeeCCCCCCCC----CceEEeCCC-cEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHh-hHHHHHHHhcC
Q 001081 115 GNIKVFCRTRPLFEDEG----PSVVEFTDD-CTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALDG 188 (1162)
Q Consensus 115 GnIrV~~RVRPl~~~E~----~s~V~~~d~-~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~-V~PLV~svLdG 188 (1162)
+||+|+||+||+...|. ..++..+++ .+|.+.++.. .....+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~-~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA-DKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCc-ccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 58999999999988763 356666654 6676665432 23345899999999999999999998 59999999999
Q ss_pred CceeEeeeccCCCCCccccccCC-----------CCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccC
Q 001081 189 YNVSIFAYGQTHSGKTHTMEGSS-----------HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLP 257 (1162)
Q Consensus 189 yN~~IFAYGQTGSGKTyTM~Gs~-----------~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~ 257 (1162)
||+||||||||||||||||+|+. +++||+||++++||+.+... ...|.|++||+|||||+|+|||+
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~---~~~~~v~~S~~EIy~e~v~DLL~ 157 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ---NTEYSVKVSYLELYNEELFDLLS 157 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc---cceeEEEEEEEEeeCCeeeeCCC
Confidence 99999999999999999999974 34899999999999988753 56899999999999999999998
Q ss_pred CCC--CCceEEeec----ccccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccC---
Q 001081 258 QTG--NGLAKIRLQ----SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT--- 324 (1162)
Q Consensus 258 ~~~--~~~~~i~~~----~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~t--- 324 (1162)
+.. .....+..+ ....+.++++..|.+.+++..++..|.++|..+.++ |||||+||+|++.+.....
T Consensus 158 ~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~ 237 (352)
T cd01364 158 SESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGE 237 (352)
T ss_pred CccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCC
Confidence 874 333334433 234566899999999999999999999999887664 8999999999999876432
Q ss_pred CceeeeeeeEEecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCCCcccCCCCccccccccccCCCcceEEE
Q 001081 325 GENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMI 404 (1162)
Q Consensus 325 g~~~~SKL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~~hVPYRdSKLTrLLqDSLGGNSkTvMI 404 (1162)
.....|+|+|||||||||..+.++.+.+++|+..||+||.+|++||.+|+.++.|||||+||||+||+|+|||||+|+||
T Consensus 238 ~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I 317 (352)
T cd01364 238 ELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSII 317 (352)
T ss_pred ccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEEE
Confidence 22357999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHhHHHHHhhhccccc
Q 001081 405 VNICPNAANMSETLSSLNFSSRARSTVLSL 434 (1162)
Q Consensus 405 a~ISPs~~n~eETLsTLrFAsRAr~I~~~i 434 (1162)
+||||...+++||++||+||+|+++|++.|
T Consensus 318 ~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P 347 (352)
T cd01364 318 ATISPASINLEETLSTLEYAHRAKNIKNKP 347 (352)
T ss_pred EEeCCCcccHHHHHHHHHHHHHHhhccCcc
Confidence 999999999999999999999999987655
No 20
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=4.9e-67 Score=589.28 Aligned_cols=310 Identities=37% Similarity=0.491 Sum_probs=272.7
Q ss_pred CEEEEEeeCCCCCCCCCceEEeCCCcEEEEecCCCccC------CCCceeeeceeeCCCCChHHHHHhh-HHHHHHHhcC
Q 001081 116 NIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTIS------NPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDG 188 (1162)
Q Consensus 116 nIrV~~RVRPl~~~E~~s~V~~~d~~tI~v~~~~~~~~------~~~k~F~FDkVF~~~asQeeVFe~V-~PLV~svLdG 188 (1162)
.|+||||+||+...+...+...+++..+.+..|..... .....|.||+||++ ++|++||+.+ .|+|+++++|
T Consensus 1 ~i~V~vRvRP~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~G 79 (334)
T cd01375 1 TIQVFVRVRPTPTKQGSSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSALDG 79 (334)
T ss_pred CeEEEEECCCCCCCCCccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHHhCC
Confidence 48999999999987766666667778887776654322 12468999999999 9999999986 8999999999
Q ss_pred CceeEeeeccCCCCCccccccCC---CCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCC----
Q 001081 189 YNVSIFAYGQTHSGKTHTMEGSS---HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN---- 261 (1162)
Q Consensus 189 yN~~IFAYGQTGSGKTyTM~Gs~---~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~---- 261 (1162)
||+||||||||||||||||+|+. .++||+||++++||+.++.. .+..|.|++||+|||||+++|||.+...
T Consensus 80 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~--~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~~ 157 (334)
T cd01375 80 YNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMR--ATKTYTVHVSYLEIYNEQLYDLLGDTPEALES 157 (334)
T ss_pred CccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhc--cCcceEEEEEEEEEECCEeecCCCCCcccccc
Confidence 99999999999999999999976 47899999999999988753 3567999999999999999999988742
Q ss_pred -CceEEeec--ccccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEee--ccCCceeeeee
Q 001081 262 -GLAKIRLQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNN--LITGENLYSKL 332 (1162)
Q Consensus 262 -~~~~i~~~--~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n--~~tg~~~~SKL 332 (1162)
....+..+ ....+.+++++.|.+++++..++..|..+|....+. |||||+||+|++.+.+ ...+....|+|
T Consensus 158 ~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s~l 237 (334)
T cd01375 158 LPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSKL 237 (334)
T ss_pred CCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEEEEE
Confidence 22334333 234567899999999999999999999999877654 8999999999999873 34445678999
Q ss_pred eEEecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCC-CcccCCCCccccccccccCCCcceEEEEEeCCCC
Q 001081 333 SLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK-DIVPYENSMLTKVLADSLGESSKTLMIVNICPNA 411 (1162)
Q Consensus 333 ~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~-~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~ 411 (1162)
+|||||||||..+++..|.+++|+..||+||.+|++||.+|+.++ .||||||||||+||+|+|||||+|+||+||||..
T Consensus 238 ~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~ 317 (334)
T cd01375 238 NLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEP 317 (334)
T ss_pred EEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCch
Confidence 999999999999999999999999999999999999999999988 9999999999999999999999999999999999
Q ss_pred CCHHHHHHHhHHHHHhh
Q 001081 412 ANMSETLSSLNFSSRAR 428 (1162)
Q Consensus 412 ~n~eETLsTLrFAsRAr 428 (1162)
.+++||++||+||+|++
T Consensus 318 ~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 318 SNLDETLSTLRFAQRVA 334 (334)
T ss_pred hhHHHHHHHHHHHHhcC
Confidence 99999999999999984
No 21
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=1e-66 Score=586.89 Aligned_cols=307 Identities=34% Similarity=0.537 Sum_probs=268.5
Q ss_pred CEEEEEeeCCCCCCCCC----ceEEe-CCCcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHhh-HHHHHHHhcCC
Q 001081 116 NIKVFCRTRPLFEDEGP----SVVEF-TDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDGY 189 (1162)
Q Consensus 116 nIrV~~RVRPl~~~E~~----s~V~~-~d~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~V-~PLV~svLdGy 189 (1162)
+|+||||+||+.+.|.. .++.+ +++.++.+.+ .+.|.||+||+++++|++||+.+ .|+|+++++||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~--------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~ 73 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT--------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGY 73 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC--------CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 69999999999877632 34443 2333444422 47899999999999999999985 89999999999
Q ss_pred ceeEeeeccCCCCCccccccCC------CCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCC--C
Q 001081 190 NVSIFAYGQTHSGKTHTMEGSS------HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG--N 261 (1162)
Q Consensus 190 N~~IFAYGQTGSGKTyTM~Gs~------~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~--~ 261 (1162)
|+||||||||||||||||+|+. .++|||||++++||+.+.... ...+|.|.|||+|||||.|+|||.+.. .
T Consensus 74 n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~-~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~ 152 (341)
T cd01372 74 NATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKK-DEPDFQLKVSFLELYNEEVRDLLSPSTSEK 152 (341)
T ss_pred ccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhcc-ccceEEEEEEEEEeECCeeecCCCCcccCC
Confidence 9999999999999999999974 579999999999999887543 356899999999999999999998874 3
Q ss_pred CceEEeecc--cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeecc----------CC
Q 001081 262 GLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI----------TG 325 (1162)
Q Consensus 262 ~~~~i~~~~--~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~----------tg 325 (1162)
....++.+. ...+.+++++.|.+.+++..++..|..+|....+. |||||+||+|+|.+.+.. ..
T Consensus 153 ~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~ 232 (341)
T cd01372 153 SPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKN 232 (341)
T ss_pred CCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCC
Confidence 344454433 34567999999999999999999999999877664 899999999999998763 34
Q ss_pred ceeeeeeeEEecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCC---CcccCCCCccccccccccCCCcceE
Q 001081 326 ENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK---DIVPYENSMLTKVLADSLGESSKTL 402 (1162)
Q Consensus 326 ~~~~SKL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~---~hVPYRdSKLTrLLqDSLGGNSkTv 402 (1162)
....|+|+||||||||+..+++..|.+++|+..||+||.+|++||.+|..++ .|||||+||||+||+|+||||++|+
T Consensus 233 ~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~ 312 (341)
T cd01372 233 STLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTL 312 (341)
T ss_pred ceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEE
Confidence 4678999999999999999999999999999999999999999999999866 7999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHhHHHHHhhhcc
Q 001081 403 MIVNICPNAANMSETLSSLNFSSRARSTV 431 (1162)
Q Consensus 403 MIa~ISPs~~n~eETLsTLrFAsRAr~I~ 431 (1162)
||+||||...+++||++||+||+|+++|+
T Consensus 313 ~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 313 MIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999874
No 22
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=6.5e-65 Score=567.97 Aligned_cols=312 Identities=38% Similarity=0.585 Sum_probs=282.5
Q ss_pred CEEEEEeeCCCCCCC---CCceEEeCCCcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHhh-HHHHHHHhcCCce
Q 001081 116 NIKVFCRTRPLFEDE---GPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDGYNV 191 (1162)
Q Consensus 116 nIrV~~RVRPl~~~E---~~s~V~~~d~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~V-~PLV~svLdGyN~ 191 (1162)
+|+||||+||+...| .+.++.+.++.+|.+.++........+.|.||+||+++++|++||+.+ .|+|+++++|+|+
T Consensus 1 ~i~V~vRvrP~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~ 80 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNG 80 (328)
T ss_pred CeEEEEEcCCCCcccccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 699999999998764 678889888889999887654455669999999999999999999986 7999999999999
Q ss_pred eEeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCC--CCCceEEeec
Q 001081 192 SIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQT--GNGLAKIRLQ 269 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~--~~~~~~i~~~ 269 (1162)
|||+||+|||||||||+|+.+++||+||++++||+.+.........|.|.+||+|||||+|+|||.+. ... ..++.+
T Consensus 81 ~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~-l~i~~~ 159 (328)
T cd00106 81 TIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKP-LSLRED 159 (328)
T ss_pred eEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCC-cEEEEc
Confidence 99999999999999999999999999999999999887655446789999999999999999999986 333 334433
Q ss_pred c--cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccCCc--eeeeeeeEEecCCCc
Q 001081 270 S--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGE--NLYSKLSLVDLAGSE 341 (1162)
Q Consensus 270 ~--~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~tg~--~~~SKL~LVDLAGSE 341 (1162)
. ...+.+++++.|.+.+++..++..|..+|....+. |||||+||+|++.+.+..... ...|+|+||||||||
T Consensus 160 ~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLaGse 239 (328)
T cd00106 160 PKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSE 239 (328)
T ss_pred CCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECCCCC
Confidence 2 34577999999999999999999999999877654 799999999999998876654 778999999999999
Q ss_pred ccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCC--CcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHH
Q 001081 342 GLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK--DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLS 419 (1162)
Q Consensus 342 R~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~--~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~eETLs 419 (1162)
+..+.+..+.+++|+..||+||.+|++||.+|+.+. .|||||+||||+||+|+|||+++|+||+||+|...+++||++
T Consensus 240 ~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~ 319 (328)
T cd00106 240 RAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLS 319 (328)
T ss_pred cccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHH
Confidence 999999999999999999999999999999999988 999999999999999999999999999999999999999999
Q ss_pred HhHHHHHhh
Q 001081 420 SLNFSSRAR 428 (1162)
Q Consensus 420 TLrFAsRAr 428 (1162)
||+||+||+
T Consensus 320 tL~~a~r~~ 328 (328)
T cd00106 320 TLRFASRAK 328 (328)
T ss_pred HHHHHHhcC
Confidence 999999985
No 23
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.5e-65 Score=591.97 Aligned_cols=318 Identities=29% Similarity=0.448 Sum_probs=278.3
Q ss_pred CCEEEEEeeCCCC-CCCCCceEEeCCCcEEEEecCCCccCC-------CCceeeeceeeCCCCChHHHHHhh-HHHHHHH
Q 001081 115 GNIKVFCRTRPLF-EDEGPSVVEFTDDCTIRVNTGDDTISN-------PKKDFEFDRVYGPHVGQAELFSDV-QPFVQSA 185 (1162)
Q Consensus 115 GnIrV~~RVRPl~-~~E~~s~V~~~d~~tI~v~~~~~~~~~-------~~k~F~FDkVF~~~asQeeVFe~V-~PLV~sv 185 (1162)
..|.||||+||+. ..+...++.+.++.+|.+..|.+.... ..+.|.|.+||+|+++|.+||+.+ .|+|.++
T Consensus 31 d~v~v~~rvrP~~~~~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~plV~dl 110 (809)
T KOG0247|consen 31 DPVLVVCRVRPLSDASEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPLVKDL 110 (809)
T ss_pred cchheeEeecCCCCCccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHHHHHHH
Confidence 7899999999988 556667888889999999876443221 237899999999999999999985 8999999
Q ss_pred hcCCceeEeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhcc-----------------------------------
Q 001081 186 LDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNS----------------------------------- 230 (1162)
Q Consensus 186 LdGyN~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~----------------------------------- 230 (1162)
+.|.|..+|+||.|||||||||+|++.++||+||+++.||..++.
T Consensus 111 Lkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~~~~n 190 (809)
T KOG0247|consen 111 LKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKREAMLN 190 (809)
T ss_pred HcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhhhhccc
Confidence 999999999999999999999999999999999999999954431
Q ss_pred ----------------------------ccccccccceeEEEEEEecchhccccCCCCCCc-----eEEe--ecccccce
Q 001081 231 ----------------------------DTTATARFNFAVTVFELYNEQLRELLPQTGNGL-----AKIR--LQSLESSI 275 (1162)
Q Consensus 231 ----------------------------~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~-----~~i~--~~~~~~v~ 275 (1162)
.-+.+..|.|+|||+|||||-|||||.+.+... ..++ .....++.
T Consensus 191 d~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~~~~~Vk 270 (809)
T KOG0247|consen 191 DRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTNGNMYVK 270 (809)
T ss_pred cccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccCCCeeec
Confidence 001345689999999999999999998764321 1122 23345678
Q ss_pred eeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeecc--CCceeeeeeeEEecCCCcccccCCCc
Q 001081 276 ELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI--TGENLYSKLSLVDLAGSEGLIAEDDS 349 (1162)
Q Consensus 276 ~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~--tg~~~~SKL~LVDLAGSER~~ks~a~ 349 (1162)
|++++.|++.+|++++|..|.++|+.++|+ |||||+||+|.+.+.... .+....|.|.|||||||||..+++++
T Consensus 271 gl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSERt~rtq~s 350 (809)
T KOG0247|consen 271 GLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSERTNRTQNS 350 (809)
T ss_pred cccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccchhcccccch
Confidence 999999999999999999999999999886 999999999999887655 45567899999999999999999999
Q ss_pred chhHHHHHHHhHhhHHHHHHHHhhcCC-----CCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHHhHHH
Q 001081 350 GERITDVLHVMKSLSALGDVLSSLTSR-----KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFS 424 (1162)
Q Consensus 350 G~RlkEa~~INkSLsaLg~VIsALs~k-----~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~eETLsTLrFA 424 (1162)
|.|++||++||.||++||+||.+|+.+ +.+|||||||||++++.+|.|..+.+||+||+|.+.+|+|+++.|+||
T Consensus 351 G~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFa 430 (809)
T KOG0247|consen 351 GERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVLKFA 430 (809)
T ss_pred hHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHHHHHH
Confidence 999999999999999999999999863 379999999999999999999999999999999999999999999999
Q ss_pred HHhhhccc
Q 001081 425 SRARSTVL 432 (1162)
Q Consensus 425 sRAr~I~~ 432 (1162)
+-+..|.+
T Consensus 431 eiaq~v~v 438 (809)
T KOG0247|consen 431 EIAQEVEV 438 (809)
T ss_pred Hhcccccc
Confidence 99998874
No 24
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.9e-63 Score=558.47 Aligned_cols=315 Identities=39% Similarity=0.593 Sum_probs=278.6
Q ss_pred CEEEEEeeCCCCCCCC----CceEEeCCC--cEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHhh-HHHHHHHhcC
Q 001081 116 NIKVFCRTRPLFEDEG----PSVVEFTDD--CTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDG 188 (1162)
Q Consensus 116 nIrV~~RVRPl~~~E~----~s~V~~~d~--~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~V-~PLV~svLdG 188 (1162)
+|+|+||+||+...|. ++++.+.++ .+|.+..+. .....+.|.||+||+++++|++||+.+ .|+|+++++|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G 78 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPK--NRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEG 78 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCC--CCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcC
Confidence 6999999999988763 467777555 367666543 224458999999999999999999985 8999999999
Q ss_pred CceeEeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCCCceEEee
Q 001081 189 YNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL 268 (1162)
Q Consensus 189 yN~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~~i~~ 268 (1162)
+|+|||+||+|||||||||+|+.+++||+||++++||+.+.... ....|.|++||+|||||+++|||.+.... ..+..
T Consensus 79 ~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~-~~~~~~v~~S~~ei~~e~v~DLL~~~~~~-l~i~~ 156 (335)
T smart00129 79 YNATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLE-EGWQFQVKVSYLEIYNEKIRDLLNPSPKK-LEIRE 156 (335)
T ss_pred CceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcc-cCceEEEEEEEEEEECCEEEECcCCCCCC-cEEEE
Confidence 99999999999999999999999999999999999999886533 35689999999999999999999887544 33443
Q ss_pred cc--cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEe--eccCCceeeeeeeEEecCCC
Q 001081 269 QS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYN--NLITGENLYSKLSLVDLAGS 340 (1162)
Q Consensus 269 ~~--~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~--n~~tg~~~~SKL~LVDLAGS 340 (1162)
+. ...+.+++++.|.+++++..++..|..+|....+. |||||+||+|+|.+. +...+....|+|+||||||+
T Consensus 157 ~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaGs 236 (335)
T smart00129 157 DKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAGS 236 (335)
T ss_pred CCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCCC
Confidence 32 34567899999999999999999999999877654 899999999999976 55566678999999999999
Q ss_pred cccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcC--CCCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHH
Q 001081 341 EGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS--RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETL 418 (1162)
Q Consensus 341 ER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~--k~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~eETL 418 (1162)
||..+.++.|.+++|+..||+||.+|++||.+|++ +..|||||+|+||+||+++|+|+++|+||+||||...+++||+
T Consensus 237 e~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl 316 (335)
T smart00129 237 ERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETL 316 (335)
T ss_pred CccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHH
Confidence 99999999999999999999999999999999998 6789999999999999999999999999999999999999999
Q ss_pred HHhHHHHHhhhccccc
Q 001081 419 SSLNFSSRARSTVLSL 434 (1162)
Q Consensus 419 sTLrFAsRAr~I~~~i 434 (1162)
+||+||+++++|++.+
T Consensus 317 ~tL~~a~~~~~i~~~p 332 (335)
T smart00129 317 STLRFASRAKEIKNKA 332 (335)
T ss_pred HHHHHHHHHhhcccCC
Confidence 9999999999998655
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=2.3e-63 Score=557.04 Aligned_cols=309 Identities=38% Similarity=0.569 Sum_probs=261.1
Q ss_pred eeCCCCCCCCC----ceEEeCC-CcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHhh-HHHHHHHhcCCceeEee
Q 001081 122 RTRPLFEDEGP----SVVEFTD-DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDGYNVSIFA 195 (1162)
Q Consensus 122 RVRPl~~~E~~----s~V~~~d-~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~V-~PLV~svLdGyN~~IFA 195 (1162)
||||++..|.. ..+...+ ...................|.||+||+++++|++||+.+ .|+|+++++|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 89999876521 2222221 111111112222334458999999999999999999985 99999999999999999
Q ss_pred eccCCCCCccccccC--CCCCChHHHHHHHHHHhhcccccc-ccccceeEEEEEEecchhccccCCCC---CCceEEeec
Q 001081 196 YGQTHSGKTHTMEGS--SHDRGLYARCFEELFDLSNSDTTA-TARFNFAVTVFELYNEQLRELLPQTG---NGLAKIRLQ 269 (1162)
Q Consensus 196 YGQTGSGKTyTM~Gs--~~d~GIIPRaledLF~~i~~~~~~-~~~f~V~VS~lEIYNE~V~DLL~~~~---~~~~~i~~~ 269 (1162)
||+|||||||||+|+ ..++||+||++++||..+...... ...|.|+|||+|||||+|+|||.+.. .....++.+
T Consensus 81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~ 160 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIRED 160 (335)
T ss_dssp EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEE
T ss_pred eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeec
Confidence 999999999999999 899999999999999988754432 46899999999999999999999884 233445544
Q ss_pred cc---ccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccCCc----eeeeeeeEEecC
Q 001081 270 SL---ESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGE----NLYSKLSLVDLA 338 (1162)
Q Consensus 270 ~~---~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~tg~----~~~SKL~LVDLA 338 (1162)
.. ..+.+++++.|.+.+++..++..|.++|....+. |||||+||+|+|.+.+..... ...|+|+|||||
T Consensus 161 ~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLa 240 (335)
T PF00225_consen 161 SNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLA 240 (335)
T ss_dssp TTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEE
T ss_pred cccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeeecc
Confidence 33 4567999999999999999999999999887765 899999999999998876554 478999999999
Q ss_pred CCcccccCCC-cchhHHHHHHHhHhhHHHHHHHHhhcCC--CCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHH
Q 001081 339 GSEGLIAEDD-SGERITDVLHVMKSLSALGDVLSSLTSR--KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMS 415 (1162)
Q Consensus 339 GSER~~ks~a-~G~RlkEa~~INkSLsaLg~VIsALs~k--~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~e 415 (1162)
||||..+.+. .+.+++|+..||+||.+|++||.+|+.+ ..|||||+||||+||+|+|||||+|+||+||+|...+++
T Consensus 241 GsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~ 320 (335)
T PF00225_consen 241 GSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYE 320 (335)
T ss_dssp ESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHH
T ss_pred cccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHH
Confidence 9999998886 4888999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHhhhc
Q 001081 416 ETLSSLNFSSRARST 430 (1162)
Q Consensus 416 ETLsTLrFAsRAr~I 430 (1162)
||++||+||+++++|
T Consensus 321 eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 321 ETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999975
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.6e-60 Score=537.90 Aligned_cols=314 Identities=26% Similarity=0.385 Sum_probs=271.1
Q ss_pred CCEEEEEeeCCCCCCCC----CceEEeCCCcEEEEecCCCccC----CCCceeeeceeeCCCCChHHHHHh-hHHHHHHH
Q 001081 115 GNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDDTIS----NPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSA 185 (1162)
Q Consensus 115 GnIrV~~RVRPl~~~E~----~s~V~~~d~~tI~v~~~~~~~~----~~~k~F~FDkVF~~~asQeeVFe~-V~PLV~sv 185 (1162)
..|.|+||-||++..|- ..+|.+|..+.+.+.-+..... -....|.||++|++.++++.||.. ++|||..+
T Consensus 208 hrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~I 287 (676)
T KOG0246|consen 208 HRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKTI 287 (676)
T ss_pred ceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHHH
Confidence 68999999999998873 3578888888777776533221 124889999999999999999997 59999999
Q ss_pred hcCCceeEeeeccCCCCCccccccCCC------CCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCC
Q 001081 186 LDGYNVSIFAYGQTHSGKTHTMEGSSH------DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQT 259 (1162)
Q Consensus 186 LdGyN~~IFAYGQTGSGKTyTM~Gs~~------d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~ 259 (1162)
|+|--+|+||||||||||||||.|+-. ..||..++.+++|-.+....-....+.|+++|||||+.++||||+..
T Consensus 288 F~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~k 367 (676)
T KOG0246|consen 288 FEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLNDK 367 (676)
T ss_pred HhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhccc
Confidence 999999999999999999999988542 36999999999999887544455688999999999999999999874
Q ss_pred CCCceEEeec--ccccceeeeeeecCCHHHHHHHHHHHHhhcCCCCc----CCceeEEEEEEEEEEeeccCCceeeeeee
Q 001081 260 GNGLAKIRLQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVS----KFNVSHLIIMIHIYYNNLITGENLYSKLS 333 (1162)
Q Consensus 260 ~~~~~~i~~~--~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t----~SSRSH~IftI~V~~~n~~tg~~~~SKL~ 333 (1162)
.. ..+..+ ....++|+.+..|.+.+++++++..|...|+.+.| +|||||+||+|.+.... +....||++
T Consensus 368 ~K--LrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~---~~k~hGKfS 442 (676)
T KOG0246|consen 368 KK--LRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG---EFKLHGKFS 442 (676)
T ss_pred cc--eEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC---cceeEeEEE
Confidence 32 222222 33567899999999999999999999999987654 49999999999997542 246789999
Q ss_pred EEecCCCccccc-CCCcchhHHHHHHHhHhhHHHHHHHHhhcCCCCcccCCCCccccccccccCC-CcceEEEEEeCCCC
Q 001081 334 LVDLAGSEGLIA-EDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGE-SSKTLMIVNICPNA 411 (1162)
Q Consensus 334 LVDLAGSER~~k-s~a~G~RlkEa~~INkSLsaLg~VIsALs~k~~hVPYRdSKLTrLLqDSLGG-NSkTvMIa~ISPs~ 411 (1162)
||||||+||-.. +.++.++..||..||+||+||..||.+|...+.|+|||.||||++|+|||-| ||+|+||+||||..
T Consensus 443 lIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~ 522 (676)
T KOG0246|consen 443 LIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGI 522 (676)
T ss_pred EEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCc
Confidence 999999999654 4567788899999999999999999999999999999999999999999988 99999999999999
Q ss_pred CCHHHHHHHhHHHHHhhhcccc
Q 001081 412 ANMSETLSSLNFSSRARSTVLS 433 (1162)
Q Consensus 412 ~n~eETLsTLrFAsRAr~I~~~ 433 (1162)
.+.+.||+|||||+|++...+.
T Consensus 523 ~ScEhTLNTLRYAdRVKeLsv~ 544 (676)
T KOG0246|consen 523 SSCEHTLNTLRYADRVKELSVD 544 (676)
T ss_pred chhhhhHHHHHHHHHHHhhcCC
Confidence 9999999999999999997654
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.2e-60 Score=563.81 Aligned_cols=341 Identities=31% Similarity=0.443 Sum_probs=273.5
Q ss_pred eCCCCCCCC----CceEE-eCCCcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHh-hHHHHHHHhcCCceeEeee
Q 001081 123 TRPLFEDEG----PSVVE-FTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALDGYNVSIFAY 196 (1162)
Q Consensus 123 VRPl~~~E~----~s~V~-~~d~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~-V~PLV~svLdGyN~~IFAY 196 (1162)
|||+...|. +.|+. .+...+|.+ +....|+||+||....+|.++|+. |.|+++.+|+|||++++||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~i--------g~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlay 72 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAI--------GKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAY 72 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceee--------cCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeee
Confidence 688876542 22333 233344444 334789999999999999999997 6999999999999999999
Q ss_pred ccCCCCCccccccC----CCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCCCceEEeecc--
Q 001081 197 GQTHSGKTHTMEGS----SHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQS-- 270 (1162)
Q Consensus 197 GQTGSGKTyTM~Gs----~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~~i~~~~-- 270 (1162)
|||||||||||.+. ..+.|+|||+++++|..+..... ..|.|.|+|+||||+.|+|||.+...... +....
T Consensus 73 gQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~--~~f~i~vs~vely~e~v~dl~~~~~~~~~-i~~~e~~ 149 (913)
T KOG0244|consen 73 GQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES--FVFRITVSFVELYNEEVLDLLKPSRLKAN-IKLREPK 149 (913)
T ss_pred cccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhc--cceeeeeeeeeccchhhhhhcChhhhhhc-eeccccC
Confidence 99999999999886 23459999999999999875433 77999999999999999999986543322 33332
Q ss_pred -cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeec-cCCceeeeeeeEEecCCCcccc
Q 001081 271 -LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNL-ITGENLYSKLSLVDLAGSEGLI 344 (1162)
Q Consensus 271 -~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~-~tg~~~~SKL~LVDLAGSER~~ 344 (1162)
...+.++++..|....+....|..|...|++++|+ |||||+||++++++... ......++||+|||||||||.+
T Consensus 150 g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~k 229 (913)
T KOG0244|consen 150 GEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVK 229 (913)
T ss_pred CceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeecccccccc
Confidence 23467899999999999999999999999888765 89999999999987543 3333467999999999999999
Q ss_pred cCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCCC--cccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHHhH
Q 001081 345 AEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD--IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLN 422 (1162)
Q Consensus 345 ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~~--hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~eETLsTLr 422 (1162)
+++++|+|++|+.+||.+|++||+||++|...+. |||||+||||+||||+||||+.|+||+||||+..|+.||++||+
T Consensus 230 kT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ 309 (913)
T KOG0244|consen 230 KTKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLR 309 (913)
T ss_pred ccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHH
Confidence 9999999999999999999999999999998654 99999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccccC-cchhhh----hhhHhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q 001081 423 FSSRARSTVLSLG-NRDTIK----KWRDIANDARKELYER-----EKEIQDLKQEILGLRQA 474 (1162)
Q Consensus 423 FAsRAr~I~~~i~-n~~~ik----k~k~i~~~~~~el~~l-----~~eI~eLk~Ei~~Lr~~ 474 (1162)
||.||++|++.+. |.+... ..+...+.+..++... ..+|..|..|+..|...
T Consensus 310 ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e~~~l~~~ 371 (913)
T KOG0244|consen 310 YADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKAGDELDAEINSLPFENVTLEET 371 (913)
T ss_pred HhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhccccchhHHhhhhhhhhhhhhh
Confidence 9999999997654 332321 2233333333333222 24555555555555443
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.6e-55 Score=520.11 Aligned_cols=314 Identities=31% Similarity=0.512 Sum_probs=271.1
Q ss_pred CCCEEEEEeeCCCCCCCCCceEEeCCCcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHh-hHHHHHHHhcCCcee
Q 001081 114 LGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALDGYNVS 192 (1162)
Q Consensus 114 lGnIrV~~RVRPl~~~E~~s~V~~~d~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~-V~PLV~svLdGyN~~ 192 (1162)
..+++++++..|-..++ ..+...+...+...... ...|.||+||++.++|++||+. +.|+++++++|||||
T Consensus 21 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~T 92 (568)
T COG5059 21 VSDIKSTIRIIPGELGE--RLINTSKKSHVSLEKSK------EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCT 92 (568)
T ss_pred ecCceEEEeecCCCcch--heeeccccccccccccc------ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccce
Confidence 47888999988853332 12222233333322211 4789999999999999999997 589999999999999
Q ss_pred EeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCCCceEEee--cc
Q 001081 193 IFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL--QS 270 (1162)
Q Consensus 193 IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~~i~~--~~ 270 (1162)
|||||||||||||||.|..+++||||+++.+||+.+..... +..|.|.+||+|||||+++|||.+.... ..++. ..
T Consensus 93 vfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~-~~~~~v~is~lEiYnEk~~DLl~~~~~~-~~~~~~~~~ 170 (568)
T COG5059 93 VFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSM-TKDFAVSISYLEIYNEKIYDLLSPNEES-LNIREDSLL 170 (568)
T ss_pred EEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhccc-CcceeeEeehhHHHhhHHHhhccCcccc-ccccccCCC
Confidence 99999999999999999999999999999999998875443 6789999999999999999999887654 12222 22
Q ss_pred cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEecCCCcccccC
Q 001081 271 LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAE 346 (1162)
Q Consensus 271 ~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~tg~~~~SKL~LVDLAGSER~~ks 346 (1162)
...+.+++...+.+.++++.+++.|..+|..+.+. |+|||+||++++.+.+...+....++|+||||||||++..+
T Consensus 171 ~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~~~ 250 (568)
T COG5059 171 GVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAART 250 (568)
T ss_pred ceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccceecceEEEEeeccccccchh
Confidence 33456789999999999999999999999988764 89999999999999987777666789999999999999999
Q ss_pred CCcchhHHHHHHHhHhhHHHHHHHHhhcC--CCCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHHhHHH
Q 001081 347 DDSGERITDVLHVMKSLSALGDVLSSLTS--RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFS 424 (1162)
Q Consensus 347 ~a~G~RlkEa~~INkSLsaLg~VIsALs~--k~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~eETLsTLrFA 424 (1162)
+..+.+++|+..||+||.+||+||++|.. +..|||||+|||||+|+++|||+++|+|||||+|...+++||.+||+||
T Consensus 251 ~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a 330 (568)
T COG5059 251 GNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFA 330 (568)
T ss_pred hcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHH
Confidence 99999999999999999999999999997 7899999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccCcc
Q 001081 425 SRARSTVLSLGNR 437 (1162)
Q Consensus 425 sRAr~I~~~i~n~ 437 (1162)
+||++|.+.+...
T Consensus 331 ~rak~I~~~~~~~ 343 (568)
T COG5059 331 SRAKSIKNKIQVN 343 (568)
T ss_pred HHHhhcCCccccc
Confidence 9999998765543
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=2.5e-46 Score=389.23 Aligned_cols=172 Identities=44% Similarity=0.657 Sum_probs=161.8
Q ss_pred HHHhhHHHHHHHhcCCceeEeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhc
Q 001081 174 LFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLR 253 (1162)
Q Consensus 174 VFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~ 253 (1162)
||+.+.|+|+.+++|||+|||+||||||||||||+|++.++||+||++++
T Consensus 8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~------------------------------ 57 (186)
T cd01363 8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD------------------------------ 57 (186)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH------------------------------
Confidence 99998899999999999999999999999999999999999999999987
Q ss_pred cccCCCCCCceEEeecccccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccC---Cc
Q 001081 254 ELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT---GE 326 (1162)
Q Consensus 254 DLL~~~~~~~~~i~~~~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~t---g~ 326 (1162)
+..++..|..+|.++.+. |||||+||+|++.+.+... +.
T Consensus 58 ----------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~~~ 103 (186)
T cd01363 58 ----------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQ 103 (186)
T ss_pred ----------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCccc
Confidence 677888888888777654 8999999999999887654 45
Q ss_pred eeeeeeeEEecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCCCcccCCCCccccccccccCCCcceEEEEE
Q 001081 327 NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVN 406 (1162)
Q Consensus 327 ~~~SKL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ 406 (1162)
...|+|+||||||||+..+++..+++++|+..||+||.+|++||.+|++++.|||||+||||+||+|+|||||+|+||+|
T Consensus 104 ~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~t~~i~~ 183 (186)
T cd01363 104 PKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSRTLMVAC 183 (186)
T ss_pred eeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCeEEEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCC
Q 001081 407 ICP 409 (1162)
Q Consensus 407 ISP 409 (1162)
|||
T Consensus 184 vsP 186 (186)
T cd01363 184 ISP 186 (186)
T ss_pred eCc
Confidence 998
No 30
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=99.96 E-value=6.8e-32 Score=325.90 Aligned_cols=648 Identities=35% Similarity=0.365 Sum_probs=443.3
Q ss_pred EEEecCCCccCCCCceeeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCccccccCCCCCChHHHHHH
Q 001081 143 IRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFE 222 (1162)
Q Consensus 143 I~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRale 222 (1162)
+..+.......+....+.|+.+..+...+.--+....+.+..++++++.. +|++|++.+.....|++.+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 83 (670)
T KOG0239|consen 12 IHGNTSDDTLSNPKKRFELARVYSPSVGQPSLFSDVQPFVQSALEGLNVK--------AGLTYTMEGSNQPGGLLARLFK 83 (670)
T ss_pred ccCCcccccccccccccCccccccccccccccCCccccchhhhhhhhhcc--------hhhhhhhhhhcCcchhHHHhhh
Confidence 33333444445566889999988887777666777777777777777765 8999999999999999999999
Q ss_pred HHHHhhccccccccccceeEEEEEEecchhccccCCCCCCceEEeecccccceeeeeeecCCHHHHHHHHHHHHhhcCCC
Q 001081 223 ELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGND 302 (1162)
Q Consensus 223 dLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~~i~~~~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~ 302 (1162)
.+++........ ..++.|++.+.|++.........+...-......+..........+..+......++...
T Consensus 84 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 155 (670)
T KOG0239|consen 84 ELIDLANSDKTS--------NVVEAYNERLRDLLSELQSNLSELNMALLESVEELSQAEEDNPSIFVSLLELAQENRGLY 155 (670)
T ss_pred hcccccccCCCc--------hhHHHHHHHHhhhccccccchhhhhhhhhhhhHhhhhhhcccccHHHHHHHHHhhhcccc
Confidence 888755433321 167889999999987655443332222222333344445555556666666555554433
Q ss_pred CcCCceeEEEEEEEEEEeeccCCceeeeeeeEEecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCCCcccC
Q 001081 303 VSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPY 382 (1162)
Q Consensus 303 ~t~SSRSH~IftI~V~~~n~~tg~~~~SKL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~~hVPY 382 (1162)
...++. .... ...++|+++.+.......-+....+...+-.+...+...+..
T Consensus 156 ~~~~~~---------------~~~~---~~~~~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~---------- 207 (670)
T KOG0239|consen 156 LDLSKV---------------TPEN---SLSLLDLALKESLKLESDLGDLVTELEHVTNSISELESVLKS---------- 207 (670)
T ss_pred cccccc---------------chhh---hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh----------
Confidence 322222 1111 111566666654433333233333333333332222222222
Q ss_pred CCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHHhHHHHHhhhcccccCcchhhhhhhHhhHHHHHHHHHHHHHHH
Q 001081 383 ENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQ 462 (1162)
Q Consensus 383 RdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~eETLsTLrFAsRAr~I~~~i~n~~~ikk~k~i~~~~~~el~~l~~eI~ 462 (1162)
....++.|.+.++ .|+...+.++.- ........++|.
T Consensus 208 -~~~~~~~l~~~~~-------------------------~~~~~~~~~~~l-----------------~~~~~~~~~~i~ 244 (670)
T KOG0239|consen 208 -AQEERRVLADSLG-------------------------NYADLRRNIKPL-----------------EGLESTIKKKIQ 244 (670)
T ss_pred -hHHHHHHHHHHhh-------------------------hhhhHHHhhhhh-----------------hhhhhHHHHHHH
Confidence 4455566666665 444444443211 111223344489
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 463 DLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQI 542 (1162)
Q Consensus 463 eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk~~k~~~elq~~Lk~e~~~L~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qi 542 (1162)
.|+.++..|+..+..+.+++..+.++.++.++....+..++......+.+++ .+++.+.+|.+
T Consensus 245 ~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N---------------- 307 (670)
T KOG0239|consen 245 ALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHN---------------- 307 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH----------------
Confidence 9999999999999999999999999999988887777666666666555555 44444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccC----------CCCcccccccccCCCCCChhHHHHHHHHHHHHHH
Q 001081 543 QQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRS----------EPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRD 612 (1162)
Q Consensus 543 qq~e~eIe~L~~eL~eLe~QL~e~~~s~e~r~~~~~----------~~~~~~~s~~k~~~~~~d~a~lkkKLEEELkkrd 612 (1162)
+|.+|+-.++..-+..+-...... +..+.............-..-.-.|.....+-.+
T Consensus 308 ------------~i~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~ 375 (670)
T KOG0239|consen 308 ------------EILELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQD 375 (670)
T ss_pred ------------HHHHhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHH
Confidence 333333333221111111000000 0000000000000000000122234445556667
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccCCCCcccccCCCeEEeeccCc
Q 001081 613 ALIERLHEENEKLFDRLTEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVALVKSSS 692 (1162)
Q Consensus 613 ~~ieqL~eEneKL~~~l~~k~~~~~s~~~~sp~s~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1162)
+-.+.++..+..++|-..-- .-+-.+++|.+.- +|.+. .+..+ .+.|.+ ..+.-+.+..+++|-
T Consensus 376 ~VF~e~~~lv~S~lDGYnVC-IFAYGQTGSGKTy----TM~G~--------~~~~~-Giipra--l~~lF~~~~~~~~g~ 439 (670)
T KOG0239|consen 376 DVFEEVSPLVQSALDGYNVC-IFAYGQTGSGKTY----TMSGP--------TPEDP-GIIPRA--LEKLFRTITSLKSGW 439 (670)
T ss_pred HHHHHHHHHHHHHhcCccee-EEEecccCCCccc----cccCC--------CcccC-CccHHH--HHHHHHHHHhhccCc
Confidence 78888889999998875221 1111122222210 11110 11111 344444 677778888888988
Q ss_pred ccccccCchhhHHHhhhCCCCcc-cccchhhccchhhHHHHHHHHHHHhccchhHHHHHHHhhhHHHHhHhcCcccchhh
Q 001081 693 EKIKTTPAGEYLTAALNDFNPEQ-YDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDT 771 (1162)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (1162)
.-.+++|++|+.+.++.||.++. |.+.++|.+++|+.+|++.+++|+.|..+||.+|.+|.+..+++.+.+.|.+.+++
T Consensus 440 ~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRS 519 (670)
T KOG0239|consen 440 KYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRS 519 (670)
T ss_pred eEEeeeehhHHHHHHHHHhccccccccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhcc
Confidence 88999999999999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHhHHhhhcCccccccccCcchhhhhccCCCCCCCCCCCCCCCCCCcccccccccccccccccccccchhhh
Q 001081 772 MLVSRVRILYIRSLLARSPELQSIMVSPVECFLEKSNTGRSRSSSRGSSPARSPVHYVDEKIQGFKINLKPEKKSKLSSV 851 (1162)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (1162)
|+|.+|+|.|+ ++.+.+.+.|+.+|.+.|+++| .+++|+++.++.+.|..++.++......+.+.+
T Consensus 520 H~v~~v~v~g~-------~~~t~~~~~g~l~LVDLAGSER------~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~- 585 (670)
T KOG0239|consen 520 HLVFRVRIRGI-------NELTGIRVTGVLNLVDLAGSER------VSKSGVTGERLKEAQNINKSLSALGDVISALAS- 585 (670)
T ss_pred ceEEEEEEecc-------ccCcccccccceeEeecccCcc------cCcCCCchhhhHHHHHhchhhhhhHHHHHHHhh-
Confidence 99999999999 9999999999999999998887 677889999999999999999999988888877
Q ss_pred hhhhcccccccccccccccchhhhHHHHhhhhcchhhhhhhhccCChhhhHHHHHHHHhhcccccccccCCCCCCcccch
Q 001081 852 VLRMRGIDQDTWRHQVTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQL 931 (1162)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1162)
.+.++...++-..||.+..|. .+....-|+++|+..++++.|+|.+++++++|+|....+.+...|+++.+++..|++
T Consensus 586 -k~~HiPyRNSKLT~lLq~sLG-G~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~~~~~~~~~~~~~~~~~ 663 (670)
T KOG0239|consen 586 -KRSHIPYRNSKLTQLLQDSLG-GDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARKQVSTSDDVSLKRFGQL 663 (670)
T ss_pred -cCCCCcccccchHHHhHhhhC-CccceeeEEEeCccHHHHhhhhhccchHHHhhceecccccccccccchhhhhhhhhh
Confidence 444555799999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhh
Q 001081 932 ELLSTAI 938 (1162)
Q Consensus 932 ~~~~~~~ 938 (1162)
+..++|+
T Consensus 664 ~~~~~~~ 670 (670)
T KOG0239|consen 664 EKLSTAI 670 (670)
T ss_pred hhhhhcC
Confidence 9999885
No 31
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.41 E-value=8e-09 Score=125.44 Aligned_cols=283 Identities=22% Similarity=0.241 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhhhhcCCCCCEEEEEeeCCCCCCC--CCceEEeCC----
Q 001081 74 FVKEDYLELRQEATDLQE--------YSNAKIDRVTRYLGVLADKTRKLGNIKVFCRTRPLFEDE--GPSVVEFTD---- 139 (1162)
Q Consensus 74 ~~k~~~~~lrqe~~el~e--------~~~~k~~~~~~~~~~L~e~~rklGnIrV~~RVRPl~~~E--~~s~V~~~d---- 139 (1162)
.+.+.+..|-.-++.+.. |++.++.++ |.+-.....+++|+|+|+|..... ......+.+
T Consensus 262 ~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRl------Lq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~ 335 (568)
T COG5059 262 SINKSLLTLGNVINALGDKKKSGHIPYRESKLTRL------LQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKS 335 (568)
T ss_pred hhHhhHHHHHHHHHHHhccccCCccchhhhHHHHH------HHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhh
Confidence 555566666666666653 333343322 333323334899999999987442 212222211
Q ss_pred -CcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCccccccCCCCCChHH
Q 001081 140 -DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYA 218 (1162)
Q Consensus 140 -~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~Gs~~d~GIIP 218 (1162)
..++..+.. .........|.||.+|.+...+..++....-+++..++| +++||++++|+++||.- ...++..
T Consensus 336 I~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~ 408 (568)
T COG5059 336 IKNKIQVNSS-SDSSREIEEIKFDLSEDRSEIEILVFREQSQLSQSSLSG----IFAYMQSLKKETETLKS--RIDLIMK 408 (568)
T ss_pred cCCcccccCc-CcchHHHHHHHhhhhhhhhhhhhHHHHHHHhhhhhhhhh----HHHHHhhhhhhhhcccc--hhhhhhh
Confidence 112222211 111223478999999999999999999988889988888 99999999999999942 3356666
Q ss_pred HHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCCCceEEee-ccc--ccceeeeeeecCCHHHHHHHHHHH
Q 001081 219 RCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL-QSL--ESSIELVQEKVDNPLEFSKVLKSA 295 (1162)
Q Consensus 219 RaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~~i~~-~~~--~~v~~Lt~~~V~S~~e~~~lL~~g 295 (1162)
-.+...|..........+.|...+.++++|-....+++............ ... .....+.........+..... .+
T Consensus 409 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 487 (568)
T COG5059 409 SIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEELSKKKTKIHKLNKLRHDLSSLLSSIPEETSDRVESE-KA 487 (568)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhhhcchhhhhhhhhh-hh
Confidence 67688888777666667777777777777733333333222111100000 000 000000000000011111111 11
Q ss_pred HhhcCCCC----cCCceeEEEEEEEEEEeeccCCceeeeeeeEEecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHH
Q 001081 296 FQSRGNDV----SKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLS 371 (1162)
Q Consensus 296 ~~nR~~~~----t~SSRSH~IftI~V~~~n~~tg~~~~SKL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIs 371 (1162)
...+.... ..++++|.+|..+....+...+... ++.|||||+||. -+..-|.++++..++|++|..+|++|.
T Consensus 488 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~---~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~ 563 (568)
T COG5059 488 SKLRSSASTKLNLRSSRSHSKFRDHLNGSNSSTKELS---LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIH 563 (568)
T ss_pred ccchhhcccchhhhhcccchhhhhcccchhhhhHHHH---hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhh
Confidence 22232222 2377999999888876654444333 899999999999 899999999999999999999999998
Q ss_pred hhc
Q 001081 372 SLT 374 (1162)
Q Consensus 372 ALs 374 (1162)
++.
T Consensus 564 ~~~ 566 (568)
T COG5059 564 ALG 566 (568)
T ss_pred hcc
Confidence 764
No 32
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.52 E-value=0.29 Score=54.51 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-CCCC
Q 001081 597 SSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEKA-SSVS 637 (1162)
Q Consensus 597 ~a~lkkKLEEELkkrd~~ieqL~eEneKL~~~l~~k~-~~~~ 637 (1162)
...+.++......+++...+.+-.+..+.|+++-... +.|.
T Consensus 151 ~~~i~e~~~~~~~~~~~L~~~l~~ell~~yeri~~~~kg~gv 192 (239)
T COG1579 151 VAEIREEGQELSSKREELKEKLDPELLSEYERIRKNKKGVGV 192 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCceE
Confidence 3344455666666777777777788888888885554 4443
No 33
>PRK11637 AmiB activator; Provisional
Probab=96.39 E-value=0.97 Score=54.05 Aligned_cols=9 Identities=44% Similarity=0.165 Sum_probs=4.7
Q ss_pred ccccccCcc
Q 001081 792 LQSIMVSPV 800 (1162)
Q Consensus 792 ~~~~~~~~~ 800 (1162)
|++|.|.+=
T Consensus 378 ~~~~~v~~G 386 (428)
T PRK11637 378 NQSALVSVG 386 (428)
T ss_pred CCcCCCCCc
Confidence 455555543
No 34
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.81 E-value=2.2 Score=52.62 Aligned_cols=40 Identities=23% Similarity=0.348 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 449 DARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNE 488 (1162)
Q Consensus 449 ~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~E 488 (1162)
++.+....++.+...|+.++..|+..|....+++..+..+
T Consensus 154 eL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~ 193 (546)
T PF07888_consen 154 ELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQ 193 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444556666666666666666666666655554443
No 35
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.77 E-value=0.58 Score=59.38 Aligned_cols=38 Identities=16% Similarity=0.346 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 524 LRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIES 561 (1162)
Q Consensus 524 L~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~ 561 (1162)
++.+..++..+...++.+++.+++.+..++.++++|+.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555555555554443
No 36
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.75 E-value=1.7 Score=49.02 Aligned_cols=124 Identities=19% Similarity=0.219 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc---cccCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHH
Q 001081 538 QKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRS---TIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDAL 614 (1162)
Q Consensus 538 ~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s~e~r~---~~~~~~~~~~~s~~k~~~~~~d~a~lkkKLEEELkkrd~~ 614 (1162)
+.-++...+..|+.|+.++..++.+|...-....... .....+...... ++....--....-..|.|...+..+.
T Consensus 100 lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~--p~tp~q~~~~sk~e~L~ekynkevee 177 (307)
T PF10481_consen 100 LEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFAT--PLTPSQYYSDSKYEELQEKYNKEVEE 177 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccC--CCChhhhhhhhhHHHHHHHHHHHHHH
Confidence 3445555566777777777777776654222222111 111111110000 01111112335566777777776667
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCc--ccCCCCc
Q 001081 615 IERLHEENEKLFDRLTEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPV--DVAPLPL 676 (1162)
Q Consensus 615 ieqL~eEneKL~~~l~~k~~~~~s~~~~sp~s~~~~~~q~~~~~~~~~~~~~~~~--~~~~~~~ 676 (1162)
-++|+.|..-|. .|.. ++. -.+.+|.-|||+|--+++.-+|. +-.||-+
T Consensus 178 rkrle~e~k~lq----~k~~----~q~-----~~qstmsHRdIArhQasSSVFsWQqektps~~ 228 (307)
T PF10481_consen 178 RKRLEAEVKALQ----AKKA----SQA-----APQSTMSHRDIARHQASSSVFSWQQEKTPSRL 228 (307)
T ss_pred HhhHHHHHHHHh----cccC----CCc-----CccccccHHHHHHHhccCcccccccccCcccc
Confidence 777777764333 2211 111 11336777899987776665554 4555544
No 37
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.70 E-value=0.81 Score=60.22 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=12.0
Q ss_pred eeeccCCCCCcccc
Q 001081 194 FAYGQTHSGKTHTM 207 (1162)
Q Consensus 194 FAYGQTGSGKTyTM 207 (1162)
+-+|++|||||..|
T Consensus 27 ~i~G~NGsGKS~il 40 (1164)
T TIGR02169 27 VISGPNGSGKSNIG 40 (1164)
T ss_pred EEECCCCCCHHHHH
Confidence 45899999999876
No 38
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.64 E-value=1.2 Score=56.65 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001081 604 LEEELKKRDALIERLHEENEKLF 626 (1162)
Q Consensus 604 LEEELkkrd~~ieqL~eEneKL~ 626 (1162)
.+..+.++|.+|..|+.....+.
T Consensus 634 ~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 634 AQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666665555444333
No 39
>PRK11637 AmiB activator; Provisional
Probab=95.60 E-value=2.6 Score=50.44 Aligned_cols=6 Identities=33% Similarity=0.324 Sum_probs=2.4
Q ss_pred cCCCCc
Q 001081 671 VAPLPL 676 (1162)
Q Consensus 671 ~~~~~~ 676 (1162)
.+|-|+
T Consensus 306 ~~~~Pv 311 (428)
T PRK11637 306 QAFWPV 311 (428)
T ss_pred CCccCC
Confidence 344443
No 40
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.55 E-value=1.5 Score=56.02 Aligned_cols=81 Identities=19% Similarity=0.231 Sum_probs=46.3
Q ss_pred hccchhh--------HHHHHHHHHHHhccchhHH----HHHHHhhhHHHHhH----------hcCcccchhhhhhhhhhh
Q 001081 722 ISDGANK--------LLMLVLAAVIKAGASREHE----ILAEIRDAVFAFIR----------KMEPTRVMDTMLVSRVRI 779 (1162)
Q Consensus 722 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 779 (1162)
++||.|- ++|-.++-+|-.|++--|- =..-+-+.+.-|+| ----.+++|-|++-+
T Consensus 645 la~~~d~s~~i~~v~~fs~~~~~~~~na~a~~~ta~~e~~d~v~~l~k~~~~~a~~~~~~l~~~~al~~~d~~~l~~--- 721 (980)
T KOG0980|consen 645 LADGDDASDLIHCVTLFSHLISTTINNAKATAYTASPEGSDRVNDLCKKCGREALAFLVSLSSENALERGDEMLLRQ--- 721 (980)
T ss_pred cCCchhhhhHhhHHHHHHHHHHHHHhcchhheeccCCchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHHH---
Confidence 5666666 6666666666655543332 22223333333322 223467788886543
Q ss_pred HHhHHhhhcCccc----cccccCcchhhhhc
Q 001081 780 LYIRSLLARSPEL----QSIMVSPVECFLEK 806 (1162)
Q Consensus 780 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 806 (1162)
||--+..-.||| -+|++-|++.-|++
T Consensus 722 -~lq~~~~~~eel~~~~~di~~e~l~~lld~ 751 (980)
T KOG0980|consen 722 -YLQTLNQLGEELLPKELDIDQELLGNLLDI 751 (980)
T ss_pred -HHHHHHHHhHHhccccchhhHHHHHHHHHH
Confidence 788888888888 35667776666654
No 41
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.44 E-value=2.7 Score=45.84 Aligned_cols=52 Identities=23% Similarity=0.321 Sum_probs=31.6
Q ss_pred hhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 438 DTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEV 489 (1162)
Q Consensus 438 ~~ikk~k~i~~~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~El 489 (1162)
..|+..+.-..+.++.....++.+.++..|+.+|..-|..+..+...+...+
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L 78 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQL 78 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3445555555556666666666677777777777776666666655554444
No 42
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.42 E-value=1.2 Score=58.65 Aligned_cols=11 Identities=18% Similarity=0.172 Sum_probs=6.0
Q ss_pred CHHHHHHHHHH
Q 001081 284 NPLEFSKVLKS 294 (1162)
Q Consensus 284 S~~e~~~lL~~ 294 (1162)
+..++..++..
T Consensus 118 ~~~~~~~~l~~ 128 (1164)
T TIGR02169 118 RLSEIHDFLAA 128 (1164)
T ss_pred cHHHHHHHHHH
Confidence 45566665543
No 43
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.06 E-value=2.9 Score=50.18 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=16.5
Q ss_pred cccCCCCCCCCcccCCCCcccc
Q 001081 658 ARNDNNNKGLPVDVAPLPLSAD 679 (1162)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~ 679 (1162)
.-+.++.++++...++.|+++.
T Consensus 285 ~i~~t~~~~~~~G~l~~PV~G~ 306 (420)
T COG4942 285 LISSTGGFGALRGQLAWPVTGR 306 (420)
T ss_pred ccccccccccccCCcCCCCCCc
Confidence 4455577888888999998743
No 44
>PRK09039 hypothetical protein; Validated
Probab=94.97 E-value=2.1 Score=50.16 Aligned_cols=84 Identities=13% Similarity=0.220 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcccccccccCCCCCChh
Q 001081 519 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSS 598 (1162)
Q Consensus 519 Ee~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s~e~r~~~~~~~~~~~~s~~k~~~~~~d~a 598 (1162)
.+...+.+++........+..-++..++++|+.|+..+..|+..|......... ....+.
T Consensus 116 ~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~--------------------~~~~i~ 175 (343)
T PRK09039 116 GRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRE--------------------SQAKIA 175 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHH
Confidence 344445555555555555555556666666666666666666655543333211 011345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 599 AVSKKLEEELKKRDALIERLHEEN 622 (1162)
Q Consensus 599 ~lkkKLEEELkkrd~~ieqL~eEn 622 (1162)
.++.+|+..++++...+++.+.+.
T Consensus 176 ~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 176 DLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 566677777766666666555543
No 45
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.95 E-value=2.4 Score=47.37 Aligned_cols=31 Identities=32% Similarity=0.523 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhh
Q 001081 599 AVSKKLEEELKKRDALI---ERLHEENEKLFDRL 629 (1162)
Q Consensus 599 ~lkkKLEEELkkrd~~i---eqL~eEneKL~~~l 629 (1162)
.+..-||-||-.++..+ .+|+.|.-.|.+.|
T Consensus 147 ErnAfLESELdEke~llesvqRLkdEardlrqel 180 (333)
T KOG1853|consen 147 ERNAFLESELDEKEVLLESVQRLKDEARDLRQEL 180 (333)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555554 56777877777777
No 46
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.92 E-value=7 Score=48.42 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001081 604 LEEELKKRDALIERLHEENEKLFDRL 629 (1162)
Q Consensus 604 LEEELkkrd~~ieqL~eEneKL~~~l 629 (1162)
+.+|....-.-|++|+...+++.+..
T Consensus 436 l~~EkQeL~~yi~~Le~r~~~~~~~~ 461 (546)
T PF07888_consen 436 LQEEKQELLEYIERLEQRLDKVADEK 461 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33333333444455555555555543
No 47
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.89 E-value=8.4 Score=43.30 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001081 597 SSAVSKKLEEELKKRDALIERLHEENEKLFDRLTE 631 (1162)
Q Consensus 597 ~a~lkkKLEEELkkrd~~ieqL~eEneKL~~~l~~ 631 (1162)
.......++++++..++....+..+-+.|...+..
T Consensus 140 ~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ 174 (239)
T COG1579 140 LAEAEARLEEEVAEIREEGQELSSKREELKEKLDP 174 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 34455577777777777777777776666666543
No 48
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.88 E-value=2.8 Score=55.17 Aligned_cols=10 Identities=20% Similarity=0.650 Sum_probs=6.3
Q ss_pred HHHhhhCCCC
Q 001081 704 LTAALNDFNP 713 (1162)
Q Consensus 704 ~~~~~~~~~~ 713 (1162)
|-+|+..|.|
T Consensus 977 lg~aiee~~~ 986 (1179)
T TIGR02168 977 LENKIKELGP 986 (1179)
T ss_pred HHHHHHHcCC
Confidence 4447777766
No 49
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.82 E-value=2.3 Score=55.93 Aligned_cols=7 Identities=29% Similarity=0.477 Sum_probs=2.6
Q ss_pred ccccccc
Q 001081 835 GFKINLK 841 (1162)
Q Consensus 835 ~~~~~~~ 841 (1162)
||.|...
T Consensus 1072 ~~~~~~~ 1078 (1179)
T TIGR02168 1072 GIEIFAQ 1078 (1179)
T ss_pred CceEEEe
Confidence 3333333
No 50
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.72 E-value=4.4 Score=46.88 Aligned_cols=95 Identities=20% Similarity=0.297 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcccccccccCCCC-CChh
Q 001081 521 NAQLRNQVAQLLQLEQEQKMQIQQ-RDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDG-MDSS 598 (1162)
Q Consensus 521 ~~qL~~ql~qllq~eeE~k~qiqq-~e~eIe~L~~eL~eLe~QL~e~~~s~e~r~~~~~~~~~~~~s~~k~~~~~-~d~a 598 (1162)
.+.|..++.++.+...++...+.+ .+..+..|..+|..|+.+........+ + ++.+. +-..
T Consensus 108 tn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le-~----------------Lr~EKVdlEn 170 (310)
T PF09755_consen 108 TNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELE-R----------------LRREKVDLEN 170 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH-H----------------HHHHHHhHHH
Confidence 356666677776666665555544 334466777777777654321111100 0 11111 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001081 599 AVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 632 (1162)
Q Consensus 599 ~lkkKLEEELkkrd~~ieqL~eEneKL~~~l~~k 632 (1162)
.+...-|.-..+...++.+|..|...|..+|..+
T Consensus 171 ~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~ 204 (310)
T PF09755_consen 171 TLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQP 204 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 2222333334556667778888888888887765
No 51
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.64 E-value=3.2 Score=54.31 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=15.3
Q ss_pred CCceeEeeeccCCCCCccccc
Q 001081 188 GYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 188 GyN~~IFAYGQTGSGKTyTM~ 208 (1162)
|-+.. |.-|+.||||+-.|.
T Consensus 61 g~~vN-fI~G~NGSGKSAIlt 80 (1074)
T KOG0250|consen 61 GPRVN-FIVGNNGSGKSAILT 80 (1074)
T ss_pred CCCce-EeecCCCCcHHHHHH
Confidence 44444 888999999998774
No 52
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.63 E-value=13 Score=46.68 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 462 QDLKQEILGLRQALKEANDQCVLLYNEV 489 (1162)
Q Consensus 462 ~eLk~Ei~~Lr~~L~~~~eq~~~l~~El 489 (1162)
+.++.||..|...|++++.+|..+.+++
T Consensus 608 d~~R~Ei~~LqrRlqaaE~R~eel~q~v 635 (961)
T KOG4673|consen 608 DMFRGEIEDLQRRLQAAERRCEELIQQV 635 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4577788888888888888888776654
No 53
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.31 E-value=4.9 Score=41.65 Aligned_cols=55 Identities=7% Similarity=0.152 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 510 LADKHKIEKEQNAQLRNQVAQLLQLE-------QEQKMQIQQRDSTIKTLQAKINSIESQRN 564 (1162)
Q Consensus 510 L~~k~k~~kEe~~qL~~ql~qllq~e-------eE~k~qiqq~e~eIe~L~~eL~eLe~QL~ 564 (1162)
+..++..+.+++......+....... ++..-+++.++......+.++.+|..+..
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333333 33344444444455555555555554444
No 54
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.25 E-value=3.8 Score=47.70 Aligned_cols=155 Identities=23% Similarity=0.166 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 454 LYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLK-SENYMLADKHKIEKEQNAQLRNQVAQLL 532 (1162)
Q Consensus 454 l~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk~~k~~~elq~~Lk-~e~~~L~~k~k~~kEe~~qL~~ql~qll 532 (1162)
+.+...+...|+.|+..|++.+.++..++..+.+.+.+..-.......... .+... +-.+++.++.+..++.
T Consensus 74 L~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~-------lV~qLEk~~~q~~qLe 146 (319)
T PF09789_consen 74 LSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHERED-------LVEQLEKLREQIEQLE 146 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHH-------HHHHHHHHHHHHHHHH
Confidence 345566677777778888877777777776665544432211111111100 12222 2334444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcccccccccCCCCCChhHHHHHHHHHHHHHH
Q 001081 533 QLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRD 612 (1162)
Q Consensus 533 q~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s~e~r~~~~~~~~~~~~s~~k~~~~~~d~a~lkkKLEEELkkrd 612 (1162)
....-..++.++...+...++.+...|+.+|...+.....+. .+ -+...+-.+-|.|.+++.+
T Consensus 147 ~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~ri----------vD-------IDaLi~ENRyL~erl~q~q 209 (319)
T PF09789_consen 147 RDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRI----------VD-------IDALIMENRYLKERLKQLQ 209 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc----------cc-------HHHHHHHHHHHHHHHHHHH
Confidence 444445555666677888899999999999977765544421 11 1222333445555555555
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 001081 613 ALIERLHEENEKLFDRLTEK 632 (1162)
Q Consensus 613 ~~ieqL~eEneKL~~~l~~k 632 (1162)
++..-++.-..|-+.-+..+
T Consensus 210 eE~~l~k~~i~KYK~~le~k 229 (319)
T PF09789_consen 210 EEKELLKQTINKYKSALERK 229 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 55554444444444444434
No 55
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=94.21 E-value=3.2 Score=49.18 Aligned_cols=65 Identities=22% Similarity=0.257 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 001081 546 DSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLH 619 (1162)
Q Consensus 546 e~eIe~L~~eL~eLe~QL~e~~~s~e~r~~~~~~~~~~~~s~~k~~~~~~d~a~lkkKLEEELkkrd~~ieqL~ 619 (1162)
...|..|+.+++.|+.++.-...+.........+... ..-++-..+++||..++.+|++.-..+.
T Consensus 252 ~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~---------~~reen~rlQrkL~~e~erRealcr~ls 316 (552)
T KOG2129|consen 252 KLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEV---------DHREENERLQRKLINELERREALCRMLS 316 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3457788888888888887655554443322211110 0113456788899999988876655443
No 56
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.18 E-value=3.2 Score=48.14 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 517 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 566 (1162)
Q Consensus 517 ~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~ 566 (1162)
.+.++.++..++....+...+.+.++.+.+..|+.+..+..++..++.+.
T Consensus 214 lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 214 LRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444555555555555555444443
No 57
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.12 E-value=5.8 Score=50.91 Aligned_cols=82 Identities=16% Similarity=0.208 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHH
Q 001081 534 LEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDA 613 (1162)
Q Consensus 534 ~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s~e~r~~~~~~~~~~~~s~~k~~~~~~d~a~lkkKLEEELkkrd~ 613 (1162)
-+.+++.+++..+.++..++..+++++.+++.+...-+. +... ......-.....+.+.+.|++.-+
T Consensus 633 AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~--~~~~-----------~~~s~~L~~~Q~~~I~~iL~~~~~ 699 (717)
T PF10168_consen 633 AEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIES--QKSP-----------KKKSIVLSESQKRTIKEILKQQGE 699 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccc-----------cCCCccCCHHHHHHHHHHHHHHHH
Confidence 344556666666666777777777776666543322111 1100 011112345566667777777776
Q ss_pred HHHHHHHHHHHHHHh
Q 001081 614 LIERLHEENEKLFDR 628 (1162)
Q Consensus 614 ~ieqL~eEneKL~~~ 628 (1162)
.|+++-++..++...
T Consensus 700 ~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 700 EIDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHHh
Confidence 776666666555544
No 58
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.10 E-value=1.8 Score=54.12 Aligned_cols=30 Identities=37% Similarity=0.565 Sum_probs=18.7
Q ss_pred cccchhhccchhhHHHHHHHHHHHhccchhHHHHHHHhh
Q 001081 716 YDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRD 754 (1162)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (1162)
|--+|+|=++.+.|.-. |-..|+ |..||||
T Consensus 553 YK~La~lh~~c~~Li~~----v~~tG~-----~~rEird 582 (594)
T PF05667_consen 553 YKLLASLHENCSQLIET----VEETGT-----ISREIRD 582 (594)
T ss_pred HHHHHHHHHHHHHHHHH----HHHhhH-----HHHHHHH
Confidence 67778888888885443 444453 4556665
No 59
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=93.53 E-value=2.2 Score=53.84 Aligned_cols=11 Identities=36% Similarity=0.833 Sum_probs=7.7
Q ss_pred HHHHHHhhccc
Q 001081 904 QIRSWLAENFE 914 (1162)
Q Consensus 904 ~~~~~~~~~~~ 914 (1162)
.+-+||||.=.
T Consensus 688 ~Le~~laekR~ 698 (1265)
T KOG0976|consen 688 HLEGWLAEKRN 698 (1265)
T ss_pred HHHHHHhhhhh
Confidence 36789888554
No 60
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=93.49 E-value=7.4 Score=49.51 Aligned_cols=30 Identities=37% Similarity=0.486 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001081 602 KKLEEELKKRDALIERLHEENEKLFDRLTE 631 (1162)
Q Consensus 602 kKLEEELkkrd~~ieqL~eEneKL~~~l~~ 631 (1162)
.-|.-.|++||++|.||.+-.--|...+..
T Consensus 525 ~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~ 554 (861)
T PF15254_consen 525 QILGITLRQRDAEIERLRELTRTLQNSMAK 554 (861)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678899999999999887666555433
No 61
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.47 E-value=5.3 Score=50.55 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=13.1
Q ss_pred HHHHhhcccccccccCCCC
Q 001081 906 RSWLAENFEFLSVTGDDAS 924 (1162)
Q Consensus 906 ~~~~~~~~~~~~~~~~~~~ 924 (1162)
-.|=|.|=.-||..-+|.+
T Consensus 820 y~wrakke~dLsFskgd~I 838 (1118)
T KOG1029|consen 820 YPWRAKKENDLSFSKGDTI 838 (1118)
T ss_pred ccccccccccccccCCCee
Confidence 4577777777777766654
No 62
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.46 E-value=2.1 Score=56.10 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=10.9
Q ss_pred eeccCCCCCcccc
Q 001081 195 AYGQTHSGKTHTM 207 (1162)
Q Consensus 195 AYGQTGSGKTyTM 207 (1162)
-.|+.||||+-.+
T Consensus 113 IvGPNGSGKSNVI 125 (1293)
T KOG0996|consen 113 IVGPNGSGKSNVI 125 (1293)
T ss_pred eECCCCCCchHHH
Confidence 3699999999876
No 63
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.42 E-value=3.6 Score=41.62 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 447 ANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLL 485 (1162)
Q Consensus 447 ~~~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l 485 (1162)
.+.+...+..++.++..|+.++..|......+.++.+.+
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l 56 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKL 56 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566666666666666666655555554443
No 64
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.40 E-value=7.5 Score=48.20 Aligned_cols=115 Identities=20% Similarity=0.266 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHhHHHHHHHHHHHHHHH
Q 001081 446 IANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSD---LKSENYMLADKHKIEKEQNA 522 (1162)
Q Consensus 446 i~~~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk~~k~~~elq~~---Lk~e~~~L~~k~k~~kEe~~ 522 (1162)
+.++...+...++.+|..|+.|+..|+..+......+.....++........+++.+ ++.....+.+..+.++.++.
T Consensus 100 ~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~ 179 (546)
T KOG0977|consen 100 LLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENS 179 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555667788888888888888887766555443333333322223333322 22233334444444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 523 QLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 560 (1162)
Q Consensus 523 qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe 560 (1162)
.+..++..+....++--.--......++.|.++|+-+.
T Consensus 180 rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 180 RLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55444444443222211111233444455555554444
No 65
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.37 E-value=5.5 Score=52.27 Aligned_cols=60 Identities=18% Similarity=0.335 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001081 510 LADKHKIEKEQNAQLRNQVAQLLQLE-QEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 569 (1162)
Q Consensus 510 L~~k~k~~kEe~~qL~~ql~qllq~e-eE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s 569 (1162)
.+..++..+...+.++.++..+.... .+...++.+.+.+++.|+.+++.++.++..+..+
T Consensus 363 ~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e 423 (1074)
T KOG0250|consen 363 IENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREE 423 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555554433 4455555566666666666666666655544443
No 66
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.27 E-value=6.4 Score=53.08 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=10.5
Q ss_pred hHHHHHHHhhhHHHHhHhcCc
Q 001081 745 EHEILAEIRDAVFAFIRKMEP 765 (1162)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~ 765 (1162)
+++=|.+-+..+...|-+|.-
T Consensus 985 ~~~dl~~a~~~l~~~i~~~d~ 1005 (1163)
T COG1196 985 QREDLEEAKEKLLEVIEELDK 1005 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555443
No 67
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.21 E-value=5.8 Score=46.11 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 526 NQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 565 (1162)
Q Consensus 526 ~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e 565 (1162)
.++....+..++.+.++.+.+..|+....+..+++.++.+
T Consensus 218 ~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ 257 (312)
T smart00787 218 QEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAE 257 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444444444
No 68
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.17 E-value=6.9 Score=42.56 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 451 RKELYEREKEIQDLKQEILGLRQALKEA 478 (1162)
Q Consensus 451 ~~el~~l~~eI~eLk~Ei~~Lr~~L~~~ 478 (1162)
...+...+..-.+|..++..|+..+...
T Consensus 28 ~~~ve~~ee~na~L~~e~~~L~~q~~s~ 55 (193)
T PF14662_consen 28 QRSVETAEEGNAQLAEEITDLRKQLKSL 55 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555433
No 69
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=93.16 E-value=0.13 Score=62.28 Aligned_cols=88 Identities=23% Similarity=0.379 Sum_probs=57.2
Q ss_pred ceeeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccccc------C-----CCCCChHHHHHHHHH
Q 001081 157 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG------S-----SHDRGLYARCFEELF 225 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~G------s-----~~d~GIIPRaledLF 225 (1162)
..|....-|.|.-+|-. .+..||+++-+|...- .-.|.|||||||||-- - .++.-+. .+||
T Consensus 3 ~~F~l~s~f~PaGDQP~---AI~~Lv~gi~~g~~~Q-tLLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLA----aQLy 74 (663)
T COG0556 3 KPFKLHSPFKPAGDQPE---AIAELVEGIENGLKHQ-TLLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLA----AQLY 74 (663)
T ss_pred CceEeccCCCCCCCcHH---HHHHHHHHHhcCceee-EEeeeccCCchhHHHHHHHHhCCCeEEEecchhHH----HHHH
Confidence 45777778888888864 3566777777775543 3469999999999954 1 1344443 3444
Q ss_pred HhhccccccccccceeEEEEEEecchhc
Q 001081 226 DLSNSDTTATARFNFAVTVFELYNEQLR 253 (1162)
Q Consensus 226 ~~i~~~~~~~~~f~V~VS~lEIYNE~V~ 253 (1162)
....+ -.+...+...|||+.-|.-.-|
T Consensus 75 ~Efk~-fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 75 SEFKE-FFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HHHHH-hCcCcceEEEeeeccccCcccc
Confidence 43332 2345567788999998865443
No 70
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.12 E-value=10 Score=38.56 Aligned_cols=33 Identities=36% Similarity=0.526 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001081 599 AVSKKLEEELKKRDALIERLHEENEKLFDRLTE 631 (1162)
Q Consensus 599 ~lkkKLEEELkkrd~~ieqL~eEneKL~~~l~~ 631 (1162)
..+..|+.++...+..++.|...|.=|.++|..
T Consensus 98 ~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 98 EQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345577778888888888888888777777643
No 71
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.11 E-value=12 Score=42.70 Aligned_cols=28 Identities=32% Similarity=0.374 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 600 VSKKLEEELKKRDALIERLHEENEKLFD 627 (1162)
Q Consensus 600 lkkKLEEELkkrd~~ieqL~eEneKL~~ 627 (1162)
....++.++......+.+...++..|.+
T Consensus 263 ~i~~le~el~~l~~~~~~~~~ey~~Ll~ 290 (312)
T PF00038_consen 263 EIAELEEELAELREEMARQLREYQELLD 290 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3446777777777777777777766654
No 72
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.99 E-value=9.7 Score=43.38 Aligned_cols=142 Identities=17% Similarity=0.186 Sum_probs=67.2
Q ss_pred CCCHHHHHHHhH--HHHHhhhcccccCcchhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 411 AANMSETLSSLN--FSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNE 488 (1162)
Q Consensus 411 ~~n~eETLsTLr--FAsRAr~I~~~i~n~~~ikk~k~i~~~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~E 488 (1162)
..++...+.-++ |...+.... ...-..|+.....+..........+..++.|+..++..+.....+...+...
T Consensus 164 ~~dL~~~L~eiR~~ye~~~~~~~-----~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~ 238 (312)
T PF00038_consen 164 SSDLSAALREIRAQYEEIAQKNR-----EELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAK 238 (312)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhHHHHHHHHHhhhh-----hhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccc
Confidence 445777777775 665554421 1111122223333333333333444444444444444444443333322222
Q ss_pred HHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 489 VQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKIN 557 (1162)
Q Consensus 489 lqk~~k~~~elq~~Lk~e~~~L~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~ 557 (1162)
.........+++..+..+...+...+.....++.+++.++.+....++++-.---.++.+|..|+.-++
T Consensus 239 ~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LLE 307 (312)
T PF00038_consen 239 NASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKLLE 307 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 222222333444455555555555566666666666666666666655554444556667777666553
No 73
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.86 E-value=8.9 Score=48.24 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001081 599 AVSKKLEEELKKRDALIERLHEENEKLFDRL 629 (1162)
Q Consensus 599 ~lkkKLEEELkkrd~~ieqL~eEneKL~~~l 629 (1162)
.-.+|-.+++.+--.-...+.+|...+-.+|
T Consensus 498 ~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL 528 (594)
T PF05667_consen 498 KNIRKQKEEIEKILSDTRELQKEINSLTGKL 528 (594)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444544444444555554554444
No 74
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.71 E-value=0.053 Score=59.03 Aligned_cols=50 Identities=22% Similarity=0.465 Sum_probs=32.7
Q ss_pred ceeeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
..|+||.-+.. ..++..|..+..+.+.--..+| .+|-||++|+||||-|.
T Consensus 3 ~~~tFdnfv~g-~~N~~a~~~~~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 3 PKYTFDNFVVG-ESNELAYAAAKAIAENPGERYN-PLFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp TT-SCCCS--T-TTTHHHHHHHHHHHHSTTTSSS-EEEEEESTTSSHHHHHH
T ss_pred CCCccccCCcC-CcHHHHHHHHHHHHhcCCCCCC-ceEEECCCCCCHHHHHH
Confidence 46999996653 4467777766665555222344 47889999999999873
No 75
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.53 E-value=6 Score=48.46 Aligned_cols=17 Identities=18% Similarity=0.366 Sum_probs=13.7
Q ss_pred eeEeeeccCCCCCcccc
Q 001081 191 VSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 191 ~~IFAYGQTGSGKTyTM 207 (1162)
+..+-+|++|+|||..+
T Consensus 28 g~~~i~G~NG~GKStll 44 (562)
T PHA02562 28 KKTLITGKNGAGKSTML 44 (562)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35667899999999765
No 76
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=92.48 E-value=12 Score=50.61 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=12.6
Q ss_pred cCCceeEeeeccCCCCCcccc
Q 001081 187 DGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 187 dGyN~~IFAYGQTGSGKTyTM 207 (1162)
.|+|+ -.||.||||+-.+
T Consensus 24 ~~~t~---IvGPNGSGKSNI~ 41 (1163)
T COG1196 24 PGFTA---IVGPNGSGKSNIV 41 (1163)
T ss_pred CCCeE---EECCCCCchHHHH
Confidence 45554 4589999998765
No 77
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.47 E-value=16 Score=44.86 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=12.8
Q ss_pred chhhccchhhHHHHHHHHH
Q 001081 719 LAVISDGANKLLMLVLAAV 737 (1162)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~ 737 (1162)
...+|-|-=+.+.|.+|-+
T Consensus 466 ~~~lS~Ge~~r~~la~~l~ 484 (562)
T PHA02562 466 YASFSQGEKARIDLALLFT 484 (562)
T ss_pred hhhcChhHHHHHHHHHHHH
Confidence 3567788878777766543
No 78
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.42 E-value=16 Score=46.63 Aligned_cols=36 Identities=33% Similarity=0.323 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001081 597 SSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 632 (1162)
Q Consensus 597 ~a~lkkKLEEELkkrd~~ieqL~eEneKL~~~l~~k 632 (1162)
+..+.+..+-.+..+++...+|++-++||..-+.++
T Consensus 474 ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ek 509 (1118)
T KOG1029|consen 474 IEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEK 509 (1118)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 344444445555556666666666666665555444
No 79
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.39 E-value=14 Score=38.37 Aligned_cols=109 Identities=15% Similarity=0.175 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 455 YEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQL 534 (1162)
Q Consensus 455 ~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk~~k~~~elq~~Lk~e~~~L~~k~k~~kEe~~qL~~ql~qllq~ 534 (1162)
..+...++.|..+...+...+.....+...+..++........+....+...... ....+.+...+..|..++.+....
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~-~~~~E~l~rriq~LEeele~ae~~ 95 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR-KSNAEQLNRRIQLLEEELEEAEKK 95 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHhHHHHHhhHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444443333333333332222111 122235566666666677766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 535 EQEQKMQIQQRDSTIKTLQAKINSIESQRN 564 (1162)
Q Consensus 535 eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~ 564 (1162)
..+...++.+.+...+.+..++..|+.+..
T Consensus 96 L~e~~ekl~e~d~~ae~~eRkv~~le~~~~ 125 (143)
T PF12718_consen 96 LKETTEKLREADVKAEHFERKVKALEQERD 125 (143)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhHH
Confidence 666667777776666677777666665443
No 80
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=92.08 E-value=9.5 Score=44.43 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001081 599 AVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 632 (1162)
Q Consensus 599 ~lkkKLEEELkkrd~~ieqL~eEneKL~~~l~~k 632 (1162)
+..++-++.+-+.+.....|.-|...|.|--.+.
T Consensus 194 ~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~~~ 227 (401)
T PF06785_consen 194 SMLDKRQAYIGKLESKVQDLMYEIRNLLQLESDM 227 (401)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3444555566666666666666666777664433
No 81
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.96 E-value=22 Score=38.85 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 454 LYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEV 489 (1162)
Q Consensus 454 l~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~El 489 (1162)
+.+++.--++|..|+..|+..+..+++-...+..++
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~ 45 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEI 45 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455556666666555554444433333333
No 82
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=91.88 E-value=3.1 Score=50.07 Aligned_cols=88 Identities=22% Similarity=0.242 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHHH
Q 001081 536 QEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALI 615 (1162)
Q Consensus 536 eE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s~e~r~~~~~~~~~~~~s~~k~~~~~~d~a~lkkKLEEELkkrd~~i 615 (1162)
+.++.++...+++|+.|+..+.+|..|++.+-.+.+...--.++ . .++..+.+-+.....+|.-+...++-++
T Consensus 333 ~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~E------r-e~L~reL~~i~~~~~~L~k~V~~~~lea 405 (622)
T COG5185 333 EKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQE------R-EKLTRELDKINIQSDKLTKSVKSRKLEA 405 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHH------H-HHHHHHHHHhcchHHHHHHHHHhHHHHH
Confidence 33455556666666666666666666665433332211000000 0 0011111222333445555556666666
Q ss_pred HHHHHHHHHHHHhhc
Q 001081 616 ERLHEENEKLFDRLT 630 (1162)
Q Consensus 616 eqL~eEneKL~~~l~ 630 (1162)
+..-++.+|.++...
T Consensus 406 q~~~~slek~~~~~~ 420 (622)
T COG5185 406 QGIFKSLEKTLRQYD 420 (622)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666677666653
No 83
>PRK02224 chromosome segregation protein; Provisional
Probab=91.70 E-value=20 Score=46.65 Aligned_cols=30 Identities=33% Similarity=0.412 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001081 603 KLEEELKKRDALIERLHEENEKLFDRLTEK 632 (1162)
Q Consensus 603 KLEEELkkrd~~ieqL~eEneKL~~~l~~k 632 (1162)
.++.++...+..++.+++..+++.+++...
T Consensus 603 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 632 (880)
T PRK02224 603 DAEDEIERLREKREALAELNDERRERLAEK 632 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444555554433
No 84
>PRK03918 chromosome segregation protein; Provisional
Probab=91.65 E-value=27 Score=45.36 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=12.1
Q ss_pred EeeeccCCCCCcccc
Q 001081 193 IFAYGQTHSGKTHTM 207 (1162)
Q Consensus 193 IFAYGQTGSGKTyTM 207 (1162)
.+-+|++|||||..|
T Consensus 26 ~~i~G~nG~GKStil 40 (880)
T PRK03918 26 NLIIGQNGSGKSSIL 40 (880)
T ss_pred EEEEcCCCCCHHHHH
Confidence 347899999999664
No 85
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.64 E-value=8.1 Score=51.11 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 518 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 565 (1162)
Q Consensus 518 kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e 565 (1162)
.+++..++..+........+.+.+++-.++++..|..+-+..-.++.+
T Consensus 478 ~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~ 525 (1293)
T KOG0996|consen 478 REEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEE 525 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444333333
No 86
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.64 E-value=6.8 Score=50.28 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 536 QEQKMQIQQRDSTIKTLQAKINSIESQRN 564 (1162)
Q Consensus 536 eE~k~qiqq~e~eIe~L~~eL~eLe~QL~ 564 (1162)
+.++.+++.....+++++.+++..+.++.
T Consensus 642 ~~~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 642 ERMKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556666667777777766666555
No 87
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.61 E-value=20 Score=46.55 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=10.3
Q ss_pred hhHHHhhhCCCCcccccch
Q 001081 702 EYLTAALNDFNPEQYDNLA 720 (1162)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~ 720 (1162)
+|||| |=||+|-..-
T Consensus 599 ~~l~A----FmPdsFlrrG 613 (1243)
T KOG0971|consen 599 SLLTA----FMPDSFLRRG 613 (1243)
T ss_pred HHHHH----hCcHhhccCC
Confidence 46665 7899986543
No 88
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.39 E-value=19 Score=44.43 Aligned_cols=103 Identities=20% Similarity=0.225 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 452 KELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQL 531 (1162)
Q Consensus 452 ~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk~~k~~~elq~~Lk~e~~~L~~k~k~~kEe~~qL~~ql~ql 531 (1162)
.+++...++.++|++.|..|+.++.+.......+.++.-.........+..|+.- .-.++..+|+...+..++.+.
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~l----eIalEqkkEec~kme~qLkkA 406 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSL----EIALEQKKEECSKMEAQLKKA 406 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777777666655555444333322111122233333333 333444556666666666665
Q ss_pred HHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q 001081 532 LQLEQE------QKMQIQQRDSTIKTLQAKINS 558 (1162)
Q Consensus 532 lq~eeE------~k~qiqq~e~eIe~L~~eL~e 558 (1162)
.....+ ..+++++.+.++..++.+...
T Consensus 407 h~~~ddar~~pe~~d~i~~le~e~~~y~de~~k 439 (654)
T KOG4809|consen 407 HNIEDDARMNPEFADQIKQLEKEASYYRDECGK 439 (654)
T ss_pred HHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence 544443 455666666666555544433
No 89
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=91.21 E-value=15 Score=48.09 Aligned_cols=19 Identities=21% Similarity=0.111 Sum_probs=10.1
Q ss_pred hhhhhhhhhhcHHHHHHHH
Q 001081 1038 AEDARLASLISLDGILNQV 1056 (1162)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~ 1056 (1162)
+.=.|.-+|.|.|-+-|--
T Consensus 1002 s~l~r~~~las~dl~~k~g 1020 (1195)
T KOG4643|consen 1002 SPLLRVLHLASIDLFTKTG 1020 (1195)
T ss_pred chHHHHHHHHHHHHHhccC
Confidence 3344555666666555443
No 90
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.20 E-value=6 Score=47.57 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 508 YMLADKHKIEKEQNAQLRNQ----VAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 564 (1162)
Q Consensus 508 ~~L~~k~k~~kEe~~qL~~q----l~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~ 564 (1162)
..+..+++.++|.+..|++. ..++..+++..+..+.+.+.+|.+|++.++.|+-.+.
T Consensus 392 ~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le 452 (493)
T KOG0804|consen 392 KKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLE 452 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehh
Confidence 33334444444444444332 2333344444566666777777777777777765553
No 91
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.11 E-value=15 Score=51.54 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=14.3
Q ss_pred eeeeecCCHHHHHHHHHHHHhhcCC
Q 001081 277 LVQEKVDNPLEFSKVLKSAFQSRGN 301 (1162)
Q Consensus 277 Lt~~~V~S~~e~~~lL~~g~~nR~~ 301 (1162)
+.+..|+...+..++.+.|.-+|-.
T Consensus 682 l~QLrcngVLEgIRicR~GfPnr~~ 706 (1930)
T KOG0161|consen 682 LNQLRCNGVLEGIRICRQGFPNRMP 706 (1930)
T ss_pred HHHhhccCcHHHHHHHHhhCccccc
Confidence 3344556666666666666655543
No 92
>PRK04863 mukB cell division protein MukB; Provisional
Probab=90.98 E-value=14 Score=51.20 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=14.8
Q ss_pred eeEeeeccCCCCCccccc
Q 001081 191 VSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 191 ~~IFAYGQTGSGKTyTM~ 208 (1162)
+++.-+|++|||||.+|-
T Consensus 28 ~~~~l~G~NGaGKSTll~ 45 (1486)
T PRK04863 28 LVTTLSGGNGAGKSTTMA 45 (1486)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 366778999999999874
No 93
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=90.94 E-value=10 Score=50.43 Aligned_cols=88 Identities=18% Similarity=0.218 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcccccccccCCCCCChhHHHH
Q 001081 523 QLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSK 602 (1162)
Q Consensus 523 qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s~e~r~~~~~~~~~~~~s~~k~~~~~~d~a~lkk 602 (1162)
+++.......+...+..+.+...+.+|..|+..++.++.++.......... .+ .... .+..+++.
T Consensus 606 ~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~-------~e-------~~~~-~ek~~~e~ 670 (1317)
T KOG0612|consen 606 KLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKREN-------QE-------RISD-SEKEALEI 670 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHH-------HH-------HHHH-HHHHHHHH
Confidence 333333333344444555555666666677766666665554322211110 00 0000 11125778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001081 603 KLEEELKKRDALIERLHEENEKL 625 (1162)
Q Consensus 603 KLEEELkkrd~~ieqL~eEneKL 625 (1162)
+++-+++-...++++...|+..+
T Consensus 671 ~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 671 KLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888776
No 94
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=90.91 E-value=1.1 Score=53.40 Aligned_cols=51 Identities=22% Similarity=0.385 Sum_probs=31.3
Q ss_pred ceeeeceeeCCCCChHHHHHhh-HHHHH-HHhc--C--CceeEeeeccCCCCCcccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDV-QPFVQ-SALD--G--YNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V-~PLV~-svLd--G--yN~~IFAYGQTGSGKTyTM 207 (1162)
..++|+.|-+.+..-+++.+.+ .|+.. ..+. | ....|+-||++|+|||+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 3466777766555444454444 34432 2333 2 2346888999999999887
No 95
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.88 E-value=21 Score=46.26 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001081 540 MQIQQRDSTIKTLQAKINSIESQRNEALHS 569 (1162)
Q Consensus 540 ~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s 569 (1162)
+.+..++++|-.+++....|..|+.++...
T Consensus 518 et~yDrdqTI~KfRelva~Lqdqlqe~~dq 547 (1243)
T KOG0971|consen 518 ETVYDRDQTIKKFRELVAHLQDQLQELTDQ 547 (1243)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455677777777777777777765553
No 96
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=90.84 E-value=11 Score=52.84 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 001081 1097 CAQRQIADARRMVEVLQ 1113 (1162)
Q Consensus 1097 ~~~~~~~~~~~~~~~~~ 1113 (1162)
||.+++.||.+-.+.++
T Consensus 1622 ~ank~~~d~~K~lkk~q 1638 (1930)
T KOG0161|consen 1622 HANKANEDAQKQLKKLQ 1638 (1930)
T ss_pred HHHHhhHHHHHHHHhhH
Confidence 56666666666554444
No 97
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=90.62 E-value=13 Score=44.20 Aligned_cols=105 Identities=13% Similarity=0.178 Sum_probs=53.7
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHH
Q 001081 441 KKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQ 520 (1162)
Q Consensus 441 kk~k~i~~~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk~~k~~~elq~~Lk~e~~~L~~k~k~~kEe 520 (1162)
+.|+.-..................+..+.+|...+...-++....++-+..+..-..+.-.....+....+.+.+...+.
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~ 295 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEG 295 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 56666666655555555555566666666666665554444444433333332222222222333333444444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 521 NAQLRNQVAQLLQLEQEQKMQIQQR 545 (1162)
Q Consensus 521 ~~qL~~ql~qllq~eeE~k~qiqq~ 545 (1162)
..++...+.++.+..++.|.++.++
T Consensus 296 V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 296 VSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555666666666666666555
No 98
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=90.57 E-value=11 Score=48.73 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=10.0
Q ss_pred hhHHhhhhhhhccCCCCCCCCch
Q 001081 933 LLSTAIMDGWMAGLGGAVPPSTD 955 (1162)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~ 955 (1162)
+.||+|.|-.-.|=|.+.-.+||
T Consensus 660 ~fs~~~~~~~~na~a~~~ta~~e 682 (980)
T KOG0980|consen 660 LFSHLISTTINNAKATAYTASPE 682 (980)
T ss_pred HHHHHHHHHHhcchhheeccCCc
Confidence 34444444444444444444444
No 99
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.56 E-value=17 Score=43.95 Aligned_cols=85 Identities=22% Similarity=0.199 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcccccccccCCCCCChhHHHHHHHH
Q 001081 527 QVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEE 606 (1162)
Q Consensus 527 ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s~e~r~~~~~~~~~~~~s~~k~~~~~~d~a~lkkKLEE 606 (1162)
-+.++..+......++....+..++.+.-+.+-..+|++++...+.. ........++|.
T Consensus 294 yLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e---------------------~~e~~~Iqeleq 352 (521)
T KOG1937|consen 294 YLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETE---------------------DEEIRRIQELEQ 352 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccch---------------------HHHHHHHHHHHH
Confidence 34444444455555555666666666666666666676666655441 012466778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 001081 607 ELKKRDALIERLHEENEKLFDRLTEK 632 (1162)
Q Consensus 607 ELkkrd~~ieqL~eEneKL~~~l~~k 632 (1162)
+|.-.+++|++-.+.+.+|+..+..-
T Consensus 353 dL~a~~eei~~~eel~~~Lrsele~l 378 (521)
T KOG1937|consen 353 DLEAVDEEIESNEELAEKLRSELEKL 378 (521)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 99999999999999999998886544
No 100
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.40 E-value=3.6 Score=45.18 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001081 458 EKEIQDLKQEILGLRQALKEAND 480 (1162)
Q Consensus 458 ~~eI~eLk~Ei~~Lr~~L~~~~e 480 (1162)
...+.+|+.|+..|+.++.....
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~ 114 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDN 114 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666655555443
No 101
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=90.40 E-value=29 Score=45.15 Aligned_cols=119 Identities=19% Similarity=0.298 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHH---HHHHHHH
Q 001081 447 ANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKI---EKEQNAQ 523 (1162)
Q Consensus 447 ~~~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk~~k~~~elq~~Lk~e~~~L~~k~k~---~kEe~~q 523 (1162)
++.+..++...+.++..++.++..+......+......+..++.........++.++..-...+..+... ....+..
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~ 368 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEK 368 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555554444443333322222222222222222223333333333333322221 2223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 524 LRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 565 (1162)
Q Consensus 524 L~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e 565 (1162)
++.....+.....++++.+...+.++..|+.+|+.|+.++++
T Consensus 369 ~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~e 410 (775)
T PF10174_consen 369 LQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLRE 410 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555566666666677777777777766665543
No 102
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=90.36 E-value=1.4 Score=51.33 Aligned_cols=30 Identities=20% Similarity=0.483 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 62 STKVQRLKDEIKFVKEDYLELRQEATDLQE 91 (1162)
Q Consensus 62 ~~~l~~l~~~l~~~k~~~~~lrqe~~el~e 91 (1162)
..+++.|+++++.++.++..++++..++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (364)
T TIGR01242 5 DVRIRKLEDEKRSLEKEKIRLERELERLRS 34 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777766666666544
No 103
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.33 E-value=13 Score=43.28 Aligned_cols=60 Identities=22% Similarity=0.229 Sum_probs=38.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 505 SENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 564 (1162)
Q Consensus 505 ~e~~~L~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~ 564 (1162)
.+...+...+...+.++...+..+.++....++.+..+.+...++..++.+|.+++....
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555666666666666666666666666777777777777777777776554
No 104
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.22 E-value=21 Score=46.87 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=11.0
Q ss_pred ChHHHHHhhHHHHHHHhcCCc
Q 001081 170 GQAELFSDVQPFVQSALDGYN 190 (1162)
Q Consensus 170 sQeeVFe~V~PLV~svLdGyN 190 (1162)
.+...|+....+++++..|..
T Consensus 368 ~~s~~~e~~e~~~eslt~G~S 388 (1174)
T KOG0933|consen 368 EDSKLLEKAEELVESLTAGLS 388 (1174)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 344445555556666655543
No 105
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=90.04 E-value=49 Score=39.55 Aligned_cols=54 Identities=20% Similarity=0.288 Sum_probs=30.2
Q ss_pred HhhHHHHHHHHhhcC------CCCcccCCCCccccccccccC-CCcceEEEEEeCCCCCCHHHHHHHhHHHHH
Q 001081 361 KSLSALGDVLSSLTS------RKDIVPYENSMLTKVLADSLG-ESSKTLMIVNICPNAANMSETLSSLNFSSR 426 (1162)
Q Consensus 361 kSLsaLg~VIsALs~------k~~hVPYRdSKLTrLLqDSLG-GNSkTvMIa~ISPs~~n~eETLsTLrFAsR 426 (1162)
-+...||.||..+.+ ++.|. +| || -.-.|.+|++|-...---.-||..|=.+++
T Consensus 7 ~~vlvLgGVIA~~gD~ig~kvGkarL--------rl----F~LRPkqTAvlvtvltG~liSA~tLailf~~~~ 67 (499)
T COG4372 7 PFVLVLGGVIAYAGDTIGKKVGKARL--------RL----FGLRPKQTAVLVTVLTGMLISAATLAILFLLNR 67 (499)
T ss_pred HHHHHHHhHHHHHhhHHHhhhhHHHH--------hH----hccCcccceeehhhhhcchhhHHHHHHHHHhhh
Confidence 356789999988875 12221 11 11 134677777776544444456666555543
No 106
>PRK03918 chromosome segregation protein; Provisional
Probab=89.98 E-value=46 Score=43.29 Aligned_cols=8 Identities=50% Similarity=0.650 Sum_probs=3.2
Q ss_pred eecccCCC
Q 001081 1122 LTLEEGGS 1129 (1162)
Q Consensus 1122 ~~~~~~~~ 1129 (1162)
+.+.+|+|
T Consensus 866 l~~~~~~s 873 (880)
T PRK03918 866 VSLEGGVS 873 (880)
T ss_pred EEecCCee
Confidence 33334443
No 107
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=89.90 E-value=49 Score=44.27 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 56 ISKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQ 90 (1162)
Q Consensus 56 ~~~~~~~~~l~~l~~~l~~~k~~~~~lrqe~~el~ 90 (1162)
.+-.++..+++.|+.+|....+.+.+..+.+++++
T Consensus 1225 ~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~ 1259 (1758)
T KOG0994|consen 1225 EDIAQLASATESLRRQLQALTEDLPQEEETLSDIT 1259 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Confidence 34566677777777777777666666666665543
No 108
>PRK04863 mukB cell division protein MukB; Provisional
Probab=89.89 E-value=36 Score=47.38 Aligned_cols=13 Identities=38% Similarity=0.355 Sum_probs=8.2
Q ss_pred CccccccccccCC
Q 001081 385 SMLTKVLADSLGE 397 (1162)
Q Consensus 385 SKLTrLLqDSLGG 397 (1162)
+.+|+.|+++|-.
T Consensus 211 ~~i~~fl~~yll~ 223 (1486)
T PRK04863 211 SAITRSLRDYLLP 223 (1486)
T ss_pred HhHHHHHHHHcCC
Confidence 3567777777643
No 109
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.83 E-value=13 Score=50.87 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=12.9
Q ss_pred HHHHHHHhhhHHHHhHhcCcccchhh
Q 001081 746 HEILAEIRDAVFAFIRKMEPTRVMDT 771 (1162)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (1162)
++=+.||-.-+-.+.++.=+..+.|+
T Consensus 1136 ~~~~~~~n~~~~~~w~~~~~~~~~~~ 1161 (1311)
T TIGR00606 1136 SMKMEEINKIIRDLWRSTYRGQDIEY 1161 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 33445555555555555444444444
No 110
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=89.83 E-value=24 Score=45.05 Aligned_cols=38 Identities=29% Similarity=0.233 Sum_probs=27.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001081 595 MDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 632 (1162)
Q Consensus 595 ~d~a~lkkKLEEELkkrd~~ieqL~eEneKL~~~l~~k 632 (1162)
.++...-.+...++........++.+|++++...+...
T Consensus 583 e~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 583 EQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERL 620 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555556666777777777788889998888888665
No 111
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=89.82 E-value=32 Score=48.15 Aligned_cols=115 Identities=15% Similarity=0.242 Sum_probs=51.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccc
Q 001081 505 SENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAV 584 (1162)
Q Consensus 505 ~e~~~L~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s~e~r~~~~~~~~~~~ 584 (1162)
.-|..|++..+..-+.+.+++.++..+..........+.+.+.++.....++..|+.....++...+.......+...
T Consensus 1229 EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~-- 1306 (1822)
T KOG4674|consen 1229 ESNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDK-- 1306 (1822)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH--
Confidence 334444444444444444444444444433333444444444444444444444444444444443332222111111
Q ss_pred ccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001081 585 SSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDR 628 (1162)
Q Consensus 585 ~s~~k~~~~~~d~a~lkkKLEEELkkrd~~ieqL~eEneKL~~~ 628 (1162)
..+.++ ..-..+|++++...+..|..+.++...+...
T Consensus 1307 ~~~~kL-------~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~ 1343 (1822)
T KOG4674|consen 1307 NDYEKL-------KSEISRLKEELEEKENLIAELKKELNRLQEK 1343 (1822)
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 1133456666667777777777776666633
No 112
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=89.80 E-value=15 Score=37.93 Aligned_cols=51 Identities=25% Similarity=0.410 Sum_probs=30.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 504 KSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKIN 557 (1162)
Q Consensus 504 k~e~~~L~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~ 557 (1162)
......+...++.+++++..+...+.+. ..+...++..++.+++.|++++.
T Consensus 100 ~~~~~~~~~~~k~~kee~~klk~~~~~~---~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 100 QKQLKSLEAKLKQEKEELQKLKNQLQQR---KTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444455555555555555444443 44556777778888888877763
No 113
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.74 E-value=41 Score=46.28 Aligned_cols=9 Identities=33% Similarity=0.575 Sum_probs=3.8
Q ss_pred HHHhhhCCC
Q 001081 704 LTAALNDFN 712 (1162)
Q Consensus 704 ~~~~~~~~~ 712 (1162)
|-.|+|.|.
T Consensus 1127 ~~~~~~~~~ 1135 (1311)
T TIGR00606 1127 LDQAIMKFH 1135 (1311)
T ss_pred HHHHHHHHH
Confidence 333444443
No 114
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=89.62 E-value=39 Score=42.25 Aligned_cols=118 Identities=22% Similarity=0.186 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHhHHHHHHHHHHHHHHHHH
Q 001081 448 NDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFT---LQSDLKSENYMLADKHKIEKEQNAQL 524 (1162)
Q Consensus 448 ~~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk~~k~~~e---lq~~Lk~e~~~L~~k~k~~kEe~~qL 524 (1162)
..++..+++..++..+++.++.+|+.++..+..+.....+++....+.... .-..++.+...+....+.+.++...+
T Consensus 95 ~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~L 174 (546)
T KOG0977|consen 95 ATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRL 174 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345566666666667777777777777666665555444444333222222 22334555555555666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 525 RNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 565 (1162)
Q Consensus 525 ~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e 565 (1162)
..+...+.......+.++.+.-.--..++.+++.|..+|.-
T Consensus 175 k~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f 215 (546)
T KOG0977|consen 175 KAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAF 215 (546)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 66666665555555555444444445666666666665543
No 115
>PRK12377 putative replication protein; Provisional
Probab=89.38 E-value=0.29 Score=54.71 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=36.2
Q ss_pred eeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccccc
Q 001081 160 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG 209 (1162)
Q Consensus 160 ~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~G 209 (1162)
+||........|..++..+..+++.+..+. ..++-||++|+||||.+.+
T Consensus 72 tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 72 SFANYQVQNDGQRYALSQAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CcCCcccCChhHHHHHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 455544445567778887777888776654 4688899999999999854
No 116
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=89.35 E-value=51 Score=44.63 Aligned_cols=44 Identities=18% Similarity=0.033 Sum_probs=26.9
Q ss_pred hHHHHH--HHHhhcccccccccC----CCCCCcccchhhhHHhhhhhhhc
Q 001081 901 LQRQIR--SWLAENFEFLSVTGD----DASGGTTGQLELLSTAIMDGWMA 944 (1162)
Q Consensus 901 ~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 944 (1162)
++|+++ .|+.==+-|++++++ ....++-|++=++-..++=.|+.
T Consensus 598 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~lgr~~~i~~~~~l~~~~ 647 (1109)
T PRK10929 598 AMRYYLLSIGLIVPLIMALITFDNLNDREFSGTLGRLCFILLCGALSLVT 647 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHHHHHHHH
Confidence 344444 254433444555554 55677889998888877766664
No 117
>PRK02224 chromosome segregation protein; Provisional
Probab=89.21 E-value=48 Score=43.27 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=12.4
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
..+-+|++|||||..+
T Consensus 25 ~~~i~G~Ng~GKStil 40 (880)
T PRK02224 25 VTVIHGVNGSGKSSLL 40 (880)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3345999999998764
No 118
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.99 E-value=0.23 Score=57.00 Aligned_cols=29 Identities=31% Similarity=0.417 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 179 QPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 179 ~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.|++..+.+--++.|+.-|+||||||.||
T Consensus 114 P~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 114 PPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred CHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 47788888999999999999999999998
No 119
>PRK08084 DNA replication initiation factor; Provisional
Probab=88.96 E-value=0.31 Score=53.58 Aligned_cols=48 Identities=17% Similarity=0.354 Sum_probs=33.8
Q ss_pred ceeeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG 209 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~G 209 (1162)
..|+||.-+.. .+...+..+..+.. ......++-||++|+||||.+.+
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAALQNALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CcCCccccccC--ccHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 56788876654 56667776655443 22234789999999999999843
No 120
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=88.88 E-value=23 Score=41.20 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=33.8
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 503 LKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 565 (1162)
Q Consensus 503 Lk~e~~~L~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e 565 (1162)
|..+...+.-++..++..+.++...+.++.....+..-.+...+..+..++.++..|+.++.+
T Consensus 103 LDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 103 LDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQ 165 (302)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555555555544444444555556666666666666666653
No 121
>PRK06893 DNA replication initiation factor; Validated
Probab=88.86 E-value=0.35 Score=52.90 Aligned_cols=47 Identities=21% Similarity=0.351 Sum_probs=32.3
Q ss_pred ceeeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
..++||..++... ..-+ ..+...+-.++|.+++-||++|+||||.+.
T Consensus 11 ~~~~fd~f~~~~~-~~~~----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ 57 (229)
T PRK06893 11 DDETLDNFYADNN-LLLL----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLK 57 (229)
T ss_pred CcccccccccCCh-HHHH----HHHHHHhhccCCCeEEEECCCCCCHHHHHH
Confidence 5688999886542 2111 222233335788889999999999999984
No 122
>PRK06620 hypothetical protein; Validated
Probab=88.85 E-value=0.28 Score=53.37 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=34.9
Q ss_pred ceeeeceeeCCCCChHHHHHhhHHHHHHHhcCCc---eeEeeeccCCCCCccccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYN---VSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN---~~IFAYGQTGSGKTyTM~ 208 (1162)
..|+||..+...+ +...|..+..+.+. -|+| -.++-||++||||||.+.
T Consensus 11 ~~~tfd~Fvvg~~-N~~a~~~~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 11 SKYHPDEFIVSSS-NDQAYNIIKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCchhhEeccc-HHHHHHHHHHHHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 5689998776444 45678776555432 1444 458999999999999984
No 123
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=88.79 E-value=27 Score=39.58 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001081 603 KLEEELKKRDALIERLHEENEKLFDRLTEK 632 (1162)
Q Consensus 603 KLEEELkkrd~~ieqL~eEneKL~~~l~~k 632 (1162)
-|.++|+..+.+|++++++++.+-+-+..+
T Consensus 282 iLQq~Lketr~~Iq~l~k~~~q~sqav~d~ 311 (330)
T KOG2991|consen 282 ILQQKLKETRKEIQRLKKGLEQVSQAVGDK 311 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 455666677889999999999888887665
No 124
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.74 E-value=29 Score=45.66 Aligned_cols=30 Identities=33% Similarity=0.388 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001081 599 AVSKKLEEELKKRDALIERLHEENEKLFDR 628 (1162)
Q Consensus 599 ~lkkKLEEELkkrd~~ieqL~eEneKL~~~ 628 (1162)
--.++|+.++.+....-.-...+.+++...
T Consensus 906 l~~kkle~e~~~~~~e~~~~~k~v~~l~~k 935 (1174)
T KOG0933|consen 906 LERKKLEHEVTKLESEKANARKEVEKLLKK 935 (1174)
T ss_pred chHHHHHhHHHHhhhhHHHHHHHHHHHHHh
Confidence 334455555555555444444555554444
No 125
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=88.62 E-value=22 Score=41.56 Aligned_cols=60 Identities=17% Similarity=0.092 Sum_probs=43.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 506 ENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 565 (1162)
Q Consensus 506 e~~~L~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e 565 (1162)
+...+..++.....++...+.++.++.....+.+..|.....++..++.+|.+++..+.+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~ 264 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455666666667777777777777777777788888888888888888888876643
No 126
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=88.51 E-value=63 Score=38.72 Aligned_cols=13 Identities=31% Similarity=0.263 Sum_probs=6.8
Q ss_pred CCCcccccccccc
Q 001081 823 RSPVHYVDEKIQG 835 (1162)
Q Consensus 823 ~~~~~~~~~~~~~ 835 (1162)
|||+---|.+.+|
T Consensus 469 ~~aiAaedt~~~G 481 (499)
T COG4372 469 RSAIAAEDTVGPG 481 (499)
T ss_pred ccCCCCCCCcCCC
Confidence 4455445555555
No 127
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=88.36 E-value=66 Score=43.99 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=16.3
Q ss_pred ccccccCCCCCChHHHHHHHHHH
Q 001081 204 THTMEGSSHDRGLYARCFEELFD 226 (1162)
Q Consensus 204 TyTM~Gs~~d~GIIPRaledLF~ 226 (1162)
-|.|.++++.---||+++.-+++
T Consensus 170 ~fSL~~s~~~~~hI~kli~~vln 192 (1201)
T PF12128_consen 170 RFSLCESSHQYQHIEKLINAVLN 192 (1201)
T ss_pred hcCcCCCcccccChHHHHHHHHh
Confidence 57787776666667887777764
No 128
>PRK09039 hypothetical protein; Validated
Probab=88.09 E-value=32 Score=40.57 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001081 451 RKELYEREKEIQDLKQEILGLR 472 (1162)
Q Consensus 451 ~~el~~l~~eI~eLk~Ei~~Lr 472 (1162)
..++...++++.+|+.+|..|-
T Consensus 45 s~~i~~~~~eL~~L~~qIa~L~ 66 (343)
T PRK09039 45 SREISGKDSALDRLNSQIAELA 66 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544
No 129
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=88.07 E-value=73 Score=40.67 Aligned_cols=40 Identities=23% Similarity=0.222 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 452 KELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQK 491 (1162)
Q Consensus 452 ~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk 491 (1162)
.....+-++|..|......|+..+....++......|+.-
T Consensus 527 ~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~ 566 (786)
T PF05483_consen 527 KQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKC 566 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666555555444444443
No 130
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=87.89 E-value=63 Score=42.79 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 001081 611 RDALIERLHEENEKLFDRLT 630 (1162)
Q Consensus 611 rd~~ieqL~eEneKL~~~l~ 630 (1162)
--..+++.+.|..++.+.+.
T Consensus 569 ~~n~lE~~~~elkk~idaL~ 588 (1195)
T KOG4643|consen 569 NNNDLELIHNELKKYIDALN 588 (1195)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 33344556677777776663
No 131
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=87.88 E-value=23 Score=45.48 Aligned_cols=100 Identities=33% Similarity=0.481 Sum_probs=57.8
Q ss_pred Hhhhhhhhhhhhhh-h------------cc---ccccch-hhhHHHHHhhhhhhhHHHHHHHHHhhccceeeecccCCCC
Q 001081 968 VYNSQLQHLKDIAG-T------------LA---TEDAED-ASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSP 1030 (1162)
Q Consensus 968 ~~~~~~~~~~~~~~-~------------~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1030 (1162)
+-..|+.||+-... | ++ ..+.|+ -.||-||||-|. -||..|-+ +|| +|.
T Consensus 549 ~irdQikhL~~av~~t~e~srq~~~~~~~~~~~d~d~e~l~eqilKLKSLLS---TKREQIaT-LRT---VLK------- 614 (717)
T PF09730_consen 549 IIRDQIKHLQRAVDRTTELSRQRVASRSSASEADKDKEELQEQILKLKSLLS---TKREQIAT-LRT---VLK------- 614 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccCCcccccHHHhHHHHHHHHHHHH---HHHHHHHH-HHH---HHH-------
Confidence 34579999984332 1 12 222222 248999999986 47777643 343 111
Q ss_pred CCCCCchhhhhhhhhhhc---------------HHHHHHHHH-HHHhhccccchhhhhHhHHHhhHHHHH
Q 001081 1031 IRNPSTAAEDARLASLIS---------------LDGILNQVK-DAVRQSSVNTLSRSKKKAMLTSLDELA 1084 (1162)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1084 (1162)
-|--| | +.=||+|=| |-.=||..| |.---+|+..+++.+=-.|..-||+|.
T Consensus 615 -ANKqT-A-EvALanLKsKYE~EK~~v~etm~kLRnELK~LKEDAATFsSlRamFa~RCdEYvtQldemq 681 (717)
T PF09730_consen 615 -ANKQT-A-EVALANLKSKYENEKAMVSETMMKLRNELKALKEDAATFSSLRAMFAARCDEYVTQLDEMQ 681 (717)
T ss_pred -HHHHH-H-HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01122 2 344666543 333344444 345567888888888888888888873
No 132
>PRK08116 hypothetical protein; Validated
Probab=87.65 E-value=0.33 Score=54.64 Aligned_cols=51 Identities=18% Similarity=0.331 Sum_probs=37.3
Q ss_pred ceeeeceeeCCCCChHHHHHhhHHHHHHHhc--CCceeEeeeccCCCCCccccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDVQPFVQSALD--GYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V~PLV~svLd--GyN~~IFAYGQTGSGKTyTM~ 208 (1162)
..++||.-. .+..+...|..+...++.+.+ ..|..++-||.+|+||||.+.
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred Hhcchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 456677644 355667778777777777654 345579999999999999984
No 133
>PRK07952 DNA replication protein DnaC; Validated
Probab=87.63 E-value=0.49 Score=52.82 Aligned_cols=50 Identities=20% Similarity=0.275 Sum_probs=34.7
Q ss_pred eeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccccc
Q 001081 159 FEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG 209 (1162)
Q Consensus 159 F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~G 209 (1162)
.+||.-...+..|..++..+...++....|+ ..++-||.+|+||||.+.+
T Consensus 69 ~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 69 CSFENYRVECEGQMNALSKARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 3455433334557778877777777665543 3689999999999999843
No 134
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=87.63 E-value=0.38 Score=60.07 Aligned_cols=51 Identities=22% Similarity=0.386 Sum_probs=36.2
Q ss_pred ceeeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG 209 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~G 209 (1162)
..|+||..+-... +..+|..+..+++..-.+||. ||-||.+|+||||.+..
T Consensus 283 ~~~TFDnFvvG~s-N~~A~aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 283 PKYTFDTFVIGAS-NRFAHAAAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCHhhhcCCCc-cHHHHHHHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 6799998654333 445666555555544446775 89999999999999843
No 135
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.52 E-value=10 Score=46.87 Aligned_cols=31 Identities=19% Similarity=0.316 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 536 QEQKMQIQQRDSTIKTLQAKINSIESQRNEA 566 (1162)
Q Consensus 536 eE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~ 566 (1162)
+.++.++...+++++.++.++.+|..++..+
T Consensus 297 ~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 297 EMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455555555566666666655555433
No 136
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=87.50 E-value=65 Score=39.47 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=22.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 445 DIANDARKELYEREKEIQDLKQEILGLRQAL 475 (1162)
Q Consensus 445 ~i~~~~~~el~~l~~eI~eLk~Ei~~Lr~~L 475 (1162)
.....+..++...+.+|+-|+..+..|+.++
T Consensus 330 g~l~kl~~eie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 330 GKLEKLKSEIELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3455566677777888888888888887665
No 137
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.50 E-value=5.6 Score=42.89 Aligned_cols=46 Identities=17% Similarity=0.313 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 518 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 563 (1162)
Q Consensus 518 kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL 563 (1162)
...+..+...+..+.....+....+.++...++.++.++..|..++
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~ 160 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQL 160 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555556666666666666666666666555
No 138
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.45 E-value=18 Score=46.47 Aligned_cols=8 Identities=38% Similarity=0.746 Sum_probs=5.1
Q ss_pred CCCCcccC
Q 001081 375 SRKDIVPY 382 (1162)
Q Consensus 375 ~k~~hVPY 382 (1162)
..+.+|||
T Consensus 521 s~~s~iq~ 528 (970)
T KOG0946|consen 521 SESSIIQY 528 (970)
T ss_pred ccccHHHH
Confidence 35667776
No 139
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=87.37 E-value=15 Score=43.72 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=15.1
Q ss_pred ceeEeeeccCCCCCcccc
Q 001081 190 NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 190 N~~IFAYGQTGSGKTyTM 207 (1162)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 346888999999999776
No 140
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.26 E-value=29 Score=42.05 Aligned_cols=28 Identities=11% Similarity=0.223 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001081 540 MQIQQRDSTIKTLQAKINSIESQRNEAL 567 (1162)
Q Consensus 540 ~qiqq~e~eIe~L~~eL~eLe~QL~e~~ 567 (1162)
...++.+..+.....+|++|+.|++-.+
T Consensus 421 ~~~e~~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 421 ELEEREKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 3334445556666677777776665443
No 141
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=87.16 E-value=0.4 Score=57.71 Aligned_cols=50 Identities=24% Similarity=0.452 Sum_probs=35.3
Q ss_pred CceeeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 156 KKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 156 ~k~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
...|+||.-+.. .++...|..+..+.++ -..||. +|-||++|+||||.+.
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHAALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCCCcccccccC-CchHHHHHHHHHHHhC-cCCCCe-EEEEcCCCCcHHHHHH
Confidence 367999987753 4566677765554443 123664 9999999999999984
No 142
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=87.09 E-value=54 Score=38.33 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 507 NYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTI 549 (1162)
Q Consensus 507 ~~~L~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eI 549 (1162)
...|.+.+....+++...+.++.+++....++....++.-.+.
T Consensus 215 ia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~En 257 (306)
T PF04849_consen 215 IASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAEN 257 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3344444444444555555555555444444333333333333
No 143
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=87.02 E-value=0.51 Score=50.42 Aligned_cols=46 Identities=28% Similarity=0.552 Sum_probs=33.9
Q ss_pred ceeeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..|+||.... ..+..+++.+..++. .+....|+-||++|+||||..
T Consensus 10 ~~~~~~~~~~--~~~~~~~~~l~~~~~---~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 10 DDPTFDNFYA--GGNAELLAALRQLAA---GKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CchhhcCcCc--CCcHHHHHHHHHHHh---cCCCCeEEEECCCCCCHHHHH
Confidence 5578887773 255667766655443 456778999999999999988
No 144
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=86.90 E-value=79 Score=38.46 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 452 KELYEREKEIQDLKQEILGLRQALKEA 478 (1162)
Q Consensus 452 ~el~~l~~eI~eLk~Ei~~Lr~~L~~~ 478 (1162)
.+...++++|.+++.++..++.++.+.
T Consensus 59 ~~~~kL~~~lk~~e~~i~~~~~ql~~s 85 (420)
T COG4942 59 DQRAKLEKQLKSLETEIASLEAQLIET 85 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555444333
No 145
>PRK00106 hypothetical protein; Provisional
Probab=86.84 E-value=70 Score=40.13 Aligned_cols=88 Identities=25% Similarity=0.405 Sum_probs=51.2
Q ss_pred CcccccccccCCCCCCCCcccCCCCcccccCCCeEEeeccCcccccccCchhhHHHhhhCCCCcccccchhhccchhhHH
Q 001081 651 NVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVALVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLL 730 (1162)
Q Consensus 651 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1162)
.|-.|=|||.+-|....-. . -| | .-.+.-||- .++ |..|||=--| ||
T Consensus 235 emkGriIGreGrNir~~E~-~----------tG-v------dliiddtp~--~v~--lS~fdpvRRe----iA------- 281 (535)
T PRK00106 235 NMKGRIIGREGRNIRTLES-L----------TG-I------DVIIDDTPE--VVV--LSGFDPIRRE----IA------- 281 (535)
T ss_pred HhhcceeCCCcchHHHHHH-H----------hC-c------eEEEcCCCC--eEE--EeCCChHHHH----HH-------
Confidence 6777778888776554321 0 00 0 012455553 222 6789996543 22
Q ss_pred HHHHHHHHHhc---cchhHHHHHHHhhhHHHHhHhcCcccchhh
Q 001081 731 MLVLAAVIKAG---ASREHEILAEIRDAVFAFIRKMEPTRVMDT 771 (1162)
Q Consensus 731 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (1162)
.+.|--.|+=| .+|=.|+....+.-|..+|++.--.-|+|.
T Consensus 282 r~~le~Li~dgrIhp~rIEe~v~k~~~e~~~~i~~~Ge~a~~~l 325 (535)
T PRK00106 282 RMTLESLIKDGRIHPARIEELVEKNRLEMDNRIREYGEAAAYEI 325 (535)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 22344444444 356678888888888888887766666664
No 146
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=86.73 E-value=74 Score=37.54 Aligned_cols=117 Identities=20% Similarity=0.261 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHH-------HHHHHHHHHHH
Q 001081 452 KELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADK-------HKIEKEQNAQL 524 (1162)
Q Consensus 452 ~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk~~k~~~elq~~Lk~e~~~L~~k-------~k~~kEe~~qL 524 (1162)
.-+++...+.++|+-..++|..+|-.+.+=......+.+.. .++-..++.++..++.+ ...+.|+..+|
T Consensus 92 es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~L----E~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~L 167 (401)
T PF06785_consen 92 ESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHL----EGLIRHLREENQCLQLQLDALQQECGEKEEESQTL 167 (401)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHH
Confidence 34455566777777777777777654443111111112111 11222223333333322 22233344444
Q ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 001081 525 RNQVAQLLQLEQEQK-----------MQIQQRDSTIKTLQAKINSIESQRNEALHSSEV 572 (1162)
Q Consensus 525 ~~ql~qllq~eeE~k-----------~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s~e~ 572 (1162)
.+.+.+....++.+. .-+..+..-|..|+.++++|+-+++..+.-...
T Consensus 168 nrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~~ 226 (401)
T PF06785_consen 168 NRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQLESD 226 (401)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 444444443333322 233455666889999999999888876655443
No 147
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=86.55 E-value=1e+02 Score=39.03 Aligned_cols=95 Identities=20% Similarity=0.188 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHH
Q 001081 449 DARKELYEREKEIQDLKQEILGLRQALKEANDQCVLL--------YNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQ 520 (1162)
Q Consensus 449 ~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l--------~~Elqk~~k~~~elq~~Lk~e~~~L~~k~k~~kEe 520 (1162)
-+..++......|..|+.|+..|+.++..++.....- ..-+......+.++..+++.....+.......+.+
T Consensus 239 lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~q 318 (629)
T KOG0963|consen 239 LIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQ 318 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777788888888888888876655432211 00011112233334444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001081 521 NAQLRNQVAQLLQLEQEQKMQIQ 543 (1162)
Q Consensus 521 ~~qL~~ql~qllq~eeE~k~qiq 543 (1162)
+..+.+++.......++++.+++
T Consensus 319 I~~le~~l~~~~~~leel~~kL~ 341 (629)
T KOG0963|consen 319 ISALEKELKAKISELEELKEKLN 341 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444444443
No 148
>PRK05642 DNA replication initiation factor; Validated
Probab=86.52 E-value=0.55 Score=51.68 Aligned_cols=49 Identities=20% Similarity=0.476 Sum_probs=31.1
Q ss_pred ceeeeceeeCCCCChHHHHHhhHHHHHHHhcCC-ceeEeeeccCCCCCccccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGY-NVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V~PLV~svLdGy-N~~IFAYGQTGSGKTyTM~ 208 (1162)
..|+||.-+.. .+...+..+..+.+.. .++ +..++-||++|+||||-+.
T Consensus 14 ~~~tfdnF~~~--~~~~a~~~~~~~~~~~-~~~~~~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 14 DDATFANYYPG--ANAAALGYVERLCEAD-AGWTESLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CcccccccCcC--ChHHHHHHHHHHhhcc-ccCCCCeEEEECCCCCCHHHHHH
Confidence 56899987743 2344444443333321 122 3568999999999999984
No 149
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=86.51 E-value=74 Score=39.68 Aligned_cols=87 Identities=25% Similarity=0.414 Sum_probs=51.8
Q ss_pred CcccccccccCCCCCCCCcccCCCCcccccCCCeEEeeccCcccccccCchhhHHHhhhCCCCcccccchhhccchhhHH
Q 001081 651 NVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVALVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLL 730 (1162)
Q Consensus 651 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1162)
.|-.|=|||.+-|....-. . -| | .-.+.-||- .++ |..|||=--| ||
T Consensus 214 ~~kgriigreGrnir~~e~-~----------tg-v------d~iiddtp~--~v~--ls~fdp~rre----ia------- 260 (514)
T TIGR03319 214 EMKGRIIGREGRNIRALET-L----------TG-V------DLIIDDTPE--AVI--LSGFDPVRRE----IA------- 260 (514)
T ss_pred hhhccccCCCcchHHHHHH-H----------hC-c------eEEEcCCCC--eEE--ecCCchHHHH----HH-------
Confidence 6777778888776654321 0 00 0 112455552 222 6789995433 11
Q ss_pred HHHHHHHHHhc---cchhHHHHHHHhhhHHHHhHhcCcccchh
Q 001081 731 MLVLAAVIKAG---ASREHEILAEIRDAVFAFIRKMEPTRVMD 770 (1162)
Q Consensus 731 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (1162)
-+.|--+|.=| .+|=.|+.+..+.-|...|++.-..-||+
T Consensus 261 ~~~l~~li~dgrihp~riee~~~~~~~~~~~~i~~~g~~~~~~ 303 (514)
T TIGR03319 261 RMALEKLIQDGRIHPARIEEMVEKATKEVDNAIREEGEQAAFD 303 (514)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12333334444 35667888889999999999888888887
No 150
>PRK12704 phosphodiesterase; Provisional
Probab=86.34 E-value=73 Score=39.77 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=22.2
Q ss_pred HHHhccchhHHHHHHHhhhHHHHhHhcCcccchh
Q 001081 737 VIKAGASREHEILAEIRDAVFAFIRKMEPTRVMD 770 (1162)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (1162)
.|||. |=.|+.+.++..+-.+|+..--..+++
T Consensus 278 ~i~P~--~iee~~~~~~~~~~~~~~~~ge~~~~~ 309 (520)
T PRK12704 278 RIHPA--RIEEMVEKARKEVDEEIREEGEQAVFE 309 (520)
T ss_pred CcCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56665 778888888888877776655544444
No 151
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.26 E-value=0.37 Score=58.51 Aligned_cols=31 Identities=29% Similarity=0.224 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCceeEeeeccCCCCCcccccc
Q 001081 179 QPFVQSALDGYNVSIFAYGQTHSGKTHTMEG 209 (1162)
Q Consensus 179 ~PLV~svLdGyN~~IFAYGQTGSGKTyTM~G 209 (1162)
...+..++..-++.|+.-|+||||||.||+.
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 4567778889999999999999999999964
No 152
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=86.18 E-value=47 Score=46.55 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 58 KQALSTKVQRLKDEIKFVKEDYLELRQEATDL 89 (1162)
Q Consensus 58 ~~~~~~~l~~l~~~l~~~k~~~~~lrqe~~el 89 (1162)
++.+.++|..|..+|..+++++.+...++.++
T Consensus 800 k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l 831 (1822)
T KOG4674|consen 800 KDKCESRIKELERELQKLKKKLQEKSSDLREL 831 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555544444444333
No 153
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=86.07 E-value=41 Score=42.81 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 001081 606 EELKKRDALIERLHEENEKLFDRLTEKASS 635 (1162)
Q Consensus 606 EELkkrd~~ieqL~eEneKL~~~l~~k~~~ 635 (1162)
.+|....+.++.+..+|..|...|..-+.+
T Consensus 286 ~ELq~~qe~Lea~~qqNqqL~~qls~~~~~ 315 (617)
T PF15070_consen 286 QELQEAQEHLEALSQQNQQLQAQLSLMALP 315 (617)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhcCC
Confidence 566667788888999999999888665333
No 154
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=85.99 E-value=0.5 Score=55.81 Aligned_cols=50 Identities=22% Similarity=0.377 Sum_probs=33.6
Q ss_pred ceeeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
..|+||.... ...+...|..+..+...--..+| .++-||++|+||||.+.
T Consensus 105 ~~~tfd~fi~-g~~n~~a~~~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 105 PKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCccccccc-CCcHHHHHHHHHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 6789998443 34566677666555554211244 47889999999999983
No 155
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=85.91 E-value=83 Score=42.56 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=10.7
Q ss_pred CCCHHHHHHHhHHHHHh
Q 001081 411 AANMSETLSSLNFSSRA 427 (1162)
Q Consensus 411 ~~n~eETLsTLrFAsRA 427 (1162)
..++.++++.|..+...
T Consensus 583 ~~~~~d~l~~le~~k~~ 599 (1317)
T KOG0612|consen 583 NRDLEDKLSLLEESKSK 599 (1317)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 45667777777766443
No 156
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=85.82 E-value=7.1 Score=44.28 Aligned_cols=66 Identities=21% Similarity=0.338 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hhcCCCCCEEEEEeeCC
Q 001081 56 ISKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLA-------DKTRKLGNIKVFCRTRP 125 (1162)
Q Consensus 56 ~~~~~~~~~l~~l~~~l~~~k~~~~~lrqe~~el~e~~~~k~~~~~~~~~~L~-------e~~rklGnIrV~~RVRP 125 (1162)
.=++-...+++.+...+..-.+.+..|..+-+++ |.++.-+...+..|. +-.+.+|.-+|.|.+.|
T Consensus 17 ~~~~y~~~ki~~~~~~v~~kt~nlrrleaqrnel----n~kvr~lreel~~lqe~gsyvgev~k~m~k~kVLVKvhp 89 (404)
T KOG0728|consen 17 GLRQYYLQKIEELQLQVAEKTQNLRRLEAQRNEL----NAKVRLLREELQLLQEPGSYVGEVVKAMGKKKVLVKVHP 89 (404)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHhcCcchHHHHHHhcCcceEEEEEcC
Confidence 3467778888888888777777777776665555 233222222222222 22234689999999999
No 157
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=85.79 E-value=51 Score=39.38 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001081 603 KLEEELKKRDALIERLHEENEKLFDRL 629 (1162)
Q Consensus 603 KLEEELkkrd~~ieqL~eEneKL~~~l 629 (1162)
.||--|+-++..|+=|+.|...|.|.|
T Consensus 509 ELEVLLRVKEsEiQYLKqEissLkDEL 535 (593)
T KOG4807|consen 509 ELEVLLRVKESEIQYLKQEISSLKDEL 535 (593)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 456666777778888888888888877
No 158
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=85.61 E-value=61 Score=42.32 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 60 ALSTKVQRLKDEIKFVKEDYLELRQEATDLQE 91 (1162)
Q Consensus 60 ~~~~~l~~l~~~l~~~k~~~~~lrqe~~el~e 91 (1162)
+...++..+++++...+.++..++-++..+++
T Consensus 50 ee~a~l~~~k~qlr~~q~e~q~~~~ei~~Lqe 81 (775)
T PF10174_consen 50 EEAAELSRLKEQLRVTQEENQKAQEEIQALQE 81 (775)
T ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34445555555665555555555555555544
No 159
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=85.58 E-value=62 Score=37.84 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001081 456 EREKEIQDLKQEILGLRQ 473 (1162)
Q Consensus 456 ~l~~eI~eLk~Ei~~Lr~ 473 (1162)
.++.+...|+.|...|+.
T Consensus 171 ~LEeEN~~LR~Ea~~L~~ 188 (306)
T PF04849_consen 171 SLEEENEQLRSEASQLKT 188 (306)
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 344444444444444443
No 160
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=85.53 E-value=0.7 Score=49.88 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=32.2
Q ss_pred ceeeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..|+||..+.. ....++..+..++.. .+.+..++-||.+||||||.+
T Consensus 13 ~~~~~d~f~~~--~~~~~~~~l~~~~~~--~~~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 13 PPPTFDNFVAG--ENAELVARLRELAAG--PVADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred ChhhhcccccC--CcHHHHHHHHHHHhc--cCCCCeEEEECCCCCCHHHHH
Confidence 56889998732 233455555554442 234567999999999999987
No 161
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=85.52 E-value=91 Score=42.69 Aligned_cols=38 Identities=18% Similarity=0.469 Sum_probs=21.8
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001081 590 TTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDR 628 (1162)
Q Consensus 590 ~~~~~~d~a~lkkKLEEELkkrd~~ieqL~eEneKL~~~ 628 (1162)
+.+.+-|. ..-.++..+++..+..|+++++...++.+=
T Consensus 763 L~~~GvD~-~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY 800 (1201)
T PF12128_consen 763 LAGKGVDP-ERIQQLKQEIEQLEKELKRIEERRAEVIEY 800 (1201)
T ss_pred HHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33344453 344566667777777777666665555544
No 162
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.40 E-value=1.1e+02 Score=38.39 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 516 IEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQ 562 (1162)
Q Consensus 516 ~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~Q 562 (1162)
..++.+...+-+++.+.+..++++.+++..-..++.+-..++.+-..
T Consensus 343 ~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~ 389 (581)
T KOG0995|consen 343 KLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRR 389 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666667777777777666655555544444444433
No 163
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.35 E-value=8.2 Score=49.34 Aligned_cols=51 Identities=16% Similarity=0.119 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 514 HKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 564 (1162)
Q Consensus 514 ~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~ 564 (1162)
+..++-++..+++....+..+.++++.+++.+.+....+.+.+.-|+.|+.
T Consensus 666 I~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 666 IRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444445555555555555556666666666666666666666666664
No 164
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=85.28 E-value=63 Score=35.39 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 542 IQQRDSTIKTLQAKINSIESQRNE 565 (1162)
Q Consensus 542 iqq~e~eIe~L~~eL~eLe~QL~e 565 (1162)
..+...++..++.++..|..++.+
T Consensus 166 ~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 166 HKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666654
No 165
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=85.21 E-value=0.55 Score=56.39 Aligned_cols=50 Identities=22% Similarity=0.377 Sum_probs=34.1
Q ss_pred ceeeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
..|+||.-.. ...+...|..+..+.+.--..|| .+|-||++|+||||.+.
T Consensus 117 ~~~tfd~fv~-g~~n~~a~~~~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 117 PKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CCCccccccc-CCCcHHHHHHHHHHHhCcCccCC-eEEEECCCCCCHHHHHH
Confidence 6788988443 23566677766555554222345 47889999999999984
No 166
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=85.10 E-value=36 Score=37.16 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001081 457 REKEIQDLKQEILGLRQALKE 477 (1162)
Q Consensus 457 l~~eI~eLk~Ei~~Lr~~L~~ 477 (1162)
++..|.+++..+..++..+..
T Consensus 28 l~q~ird~e~~l~~a~~~~a~ 48 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALAR 48 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555443
No 167
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=85.06 E-value=86 Score=36.78 Aligned_cols=23 Identities=39% Similarity=0.455 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 001081 607 ELKKRDALIERLHEENEKLFDRL 629 (1162)
Q Consensus 607 ELkkrd~~ieqL~eEneKL~~~l 629 (1162)
++....+.+..+......+...+
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~~l 269 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARDRL 269 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 168
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.01 E-value=44 Score=37.68 Aligned_cols=113 Identities=15% Similarity=0.254 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 455 YEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFT---LQSDLKSENYMLADKHKIEKEQNAQLRNQVAQL 531 (1162)
Q Consensus 455 ~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk~~k~~~e---lq~~Lk~e~~~L~~k~k~~kEe~~qL~~ql~ql 531 (1162)
.++...+..++.+....+..|....+....+..+.+........ ....+..++..|........++...|..++...
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~ 87 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREA 87 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777777777766665555554444333222222 223345555555555555555666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001081 532 LQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEAL 567 (1162)
Q Consensus 532 lq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~ 567 (1162)
......+......++.+...++.++...+..+...+
T Consensus 88 ~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak 123 (246)
T PF00769_consen 88 EAEIARLEEESERKEEEAEELQEELEEAREDEEEAK 123 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666777777777788888888777766554433
No 169
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=84.80 E-value=85 Score=40.68 Aligned_cols=13 Identities=31% Similarity=0.148 Sum_probs=9.5
Q ss_pred hhhHHHHHHHHHH
Q 001081 726 ANKLLMLVLAAVI 738 (1162)
Q Consensus 726 ~~~~~~~~~~~~~ 738 (1162)
-|+-+|..||-|-
T Consensus 552 dn~k~q~lL~evr 564 (1265)
T KOG0976|consen 552 DNPKAQSLLAEVR 564 (1265)
T ss_pred cCHHHHHHhhchh
Confidence 4777888887764
No 170
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=84.75 E-value=71 Score=35.59 Aligned_cols=19 Identities=26% Similarity=0.351 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001081 548 TIKTLQAKINSIESQRNEA 566 (1162)
Q Consensus 548 eIe~L~~eL~eLe~QL~e~ 566 (1162)
....++.+|..|+.++.+.
T Consensus 170 re~~~e~~i~~L~~~lkea 188 (237)
T PF00261_consen 170 REDEYEEKIRDLEEKLKEA 188 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555443
No 171
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=84.58 E-value=76 Score=40.47 Aligned_cols=11 Identities=18% Similarity=0.697 Sum_probs=5.3
Q ss_pred HHHHHHHHhhc
Q 001081 1106 RRMVEVLQQMR 1116 (1162)
Q Consensus 1106 ~~~~~~~~~~~ 1116 (1162)
.+++..|++|.
T Consensus 576 qqImqLL~eiQ 586 (617)
T PF15070_consen 576 QQIMQLLQEIQ 586 (617)
T ss_pred HHHHHHhHhcC
Confidence 34445555553
No 172
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=84.21 E-value=52 Score=33.54 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001081 543 QQRDSTIKTLQAKINSIESQRNEALH 568 (1162)
Q Consensus 543 qq~e~eIe~L~~eL~eLe~QL~e~~~ 568 (1162)
..++.++..++.++.+|..|...++.
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~ 126 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHD 126 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888888888877765544
No 173
>PRK06835 DNA replication protein DnaC; Validated
Probab=84.15 E-value=0.43 Score=55.48 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=27.2
Q ss_pred HHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccccc
Q 001081 172 AELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG 209 (1162)
Q Consensus 172 eeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~G 209 (1162)
..+++.+...++++-.+. -.++-||++|+||||.+.+
T Consensus 166 ~~~~~~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 166 EKILEKCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHHHHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 344555566777776554 5699999999999998843
No 174
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=84.09 E-value=0.88 Score=52.36 Aligned_cols=49 Identities=29% Similarity=0.402 Sum_probs=32.2
Q ss_pred eeeceeeCCCCChHHHHHhhHHHHHHHhcC-CceeEeeeccCCCCCcccc
Q 001081 159 FEFDRVYGPHVGQAELFSDVQPFVQSALDG-YNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 159 F~FDkVF~~~asQeeVFe~V~PLV~svLdG-yN~~IFAYGQTGSGKTyTM 207 (1162)
|.-|.+.+.-...++-++.+...+..++.| ...+++-||++|+|||+++
T Consensus 8 l~~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 8 LEPDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 333444443444555566665556665554 5568999999999999976
No 175
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=84.00 E-value=72 Score=35.01 Aligned_cols=20 Identities=45% Similarity=0.559 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 001081 597 SSAVSKKLEEELKKRDALIE 616 (1162)
Q Consensus 597 ~a~lkkKLEEELkkrd~~ie 616 (1162)
...+..++++-+..+...|+
T Consensus 180 ~~~v~~~l~~~l~~KN~~I~ 199 (201)
T PF13851_consen 180 LSQVSKKLEDVLDSKNQTIK 199 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33455566665555555544
No 176
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=84.00 E-value=78 Score=35.43 Aligned_cols=24 Identities=42% Similarity=0.545 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 454 LYEREKEIQDLKQEILGLRQALKE 477 (1162)
Q Consensus 454 l~~l~~eI~eLk~Ei~~Lr~~L~~ 477 (1162)
+..+...+.+++.+.+.|+.++.+
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~ 45 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEE 45 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666655543
No 177
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=83.89 E-value=19 Score=41.89 Aligned_cols=51 Identities=10% Similarity=0.141 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001081 519 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 569 (1162)
Q Consensus 519 Ee~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s 569 (1162)
++..++..+..+..+.......++.+..++.+.+...+.....++..+.+.
T Consensus 85 ~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 85 EELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333344444444445555555666666666777777777776666554444
No 178
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=83.88 E-value=51 Score=40.66 Aligned_cols=13 Identities=15% Similarity=0.105 Sum_probs=6.2
Q ss_pred HHHHhHhhHHHHH
Q 001081 356 VLHVMKSLSALGD 368 (1162)
Q Consensus 356 a~~INkSLsaLg~ 368 (1162)
|..|-.||..-..
T Consensus 81 aAkiGqsllk~nk 93 (596)
T KOG4360|consen 81 AAKIGQSLLKANK 93 (596)
T ss_pred HHHHHHHHHhhhh
Confidence 4455555544333
No 179
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=83.61 E-value=0.69 Score=55.92 Aligned_cols=49 Identities=27% Similarity=0.448 Sum_probs=33.1
Q ss_pred eeeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 158 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 158 ~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
.|+||..+... ++...|..+..++.+-=..|| .+|-||.+|+||||.|.
T Consensus 111 ~~tFdnFv~g~-~n~~A~~aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIAVQTVSKNPGISYN-PLFIYGESGMGKTHLLK 159 (450)
T ss_pred ccchhcccCCC-cHHHHHHHHHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence 58999966544 456677665555432111244 48899999999999984
No 180
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=83.59 E-value=87 Score=40.57 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001081 520 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH 568 (1162)
Q Consensus 520 e~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~ 568 (1162)
....++-+++.-..+..-+...+++++.+|.-|++-.+.|...+...+.
T Consensus 509 ~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 509 NVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444555555555567778888999998888887777766655444
No 181
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=83.53 E-value=97 Score=36.19 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 447 ANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVL 484 (1162)
Q Consensus 447 ~~~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~ 484 (1162)
..+....+.+....-..+..++..|+..+....++...
T Consensus 116 L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~ 153 (309)
T PF09728_consen 116 LKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYEL 153 (309)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455777777777777766665543
No 182
>PRK09087 hypothetical protein; Validated
Probab=83.41 E-value=0.74 Score=50.61 Aligned_cols=47 Identities=19% Similarity=0.149 Sum_probs=32.2
Q ss_pred ceeeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
..|+||.-+..... ..+|..+... ..-.|-.++-||++||||||.+.
T Consensus 16 ~~~~~~~Fi~~~~N-~~a~~~l~~~----~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 16 PAYGRDDLLVTESN-RAAVSLVDHW----PNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCChhceeecCch-HHHHHHHHhc----ccCCCCeEEEECCCCCCHHHHHH
Confidence 56889987764443 4477654322 22235569999999999999984
No 183
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=83.37 E-value=98 Score=36.08 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 456 EREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQK 491 (1162)
Q Consensus 456 ~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk 491 (1162)
.....+.+|..++..++.......++...+.++.++
T Consensus 155 e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe 190 (294)
T COG1340 155 EENEKLKELKAEIDELKKKAREIHEKIQELANEAQE 190 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777777776666666665555555544
No 184
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=83.34 E-value=83 Score=35.23 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=25.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001081 595 MDSSAVSKKLEEELKKRDALIERLHEENEKLFDR 628 (1162)
Q Consensus 595 ~d~a~lkkKLEEELkkrd~~ieqL~eEneKL~~~ 628 (1162)
++...+..+++.|...|+..+..+..+.+.+...
T Consensus 157 e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~ 190 (247)
T PF06705_consen 157 EEENRLQEKIEKEKNTRESKLSELRSELEEVKRR 190 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677788888888888888887777766653
No 185
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=83.29 E-value=19 Score=45.05 Aligned_cols=22 Identities=9% Similarity=0.444 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001081 539 KMQIQQRDSTIKTLQAKINSIE 560 (1162)
Q Consensus 539 k~qiqq~e~eIe~L~~eL~eLe 560 (1162)
+.++.+.+.+++.|+.++++++
T Consensus 487 ~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 487 EKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555544
No 186
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=83.05 E-value=1e+02 Score=36.22 Aligned_cols=19 Identities=5% Similarity=0.197 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001081 603 KLEEELKKRDALIERLHEE 621 (1162)
Q Consensus 603 KLEEELkkrd~~ieqL~eE 621 (1162)
.++.++...+..+++++..
T Consensus 250 ~~~~~l~~~~~~l~~~~~~ 268 (423)
T TIGR01843 250 EAQARLAELRERLNKARDR 268 (423)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544443
No 187
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=82.97 E-value=69 Score=34.01 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001081 602 KKLEEELKKRDALIERLHEENE 623 (1162)
Q Consensus 602 kKLEEELkkrd~~ieqL~eEne 623 (1162)
.+..+++......++.++...+
T Consensus 148 ~~~~~~~~~l~~~i~~l~rk~~ 169 (177)
T PF13870_consen 148 DKTKEEVEELRKEIKELERKVE 169 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554444443
No 188
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=82.84 E-value=80 Score=41.79 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=17.3
Q ss_pred eeccCCCCCccccccCCCCCChHHHHHHHHHHhh
Q 001081 195 AYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLS 228 (1162)
Q Consensus 195 AYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i 228 (1162)
..|..||||+--... |.-.+.+.|..+
T Consensus 30 IVGrNGSGKSNFF~A-------IrFVLSDey~hL 56 (1200)
T KOG0964|consen 30 IVGRNGSGKSNFFHA-------IRFVLSDEYSHL 56 (1200)
T ss_pred EecCCCCCchhhHHH-------hhhhcccchhhc
Confidence 458999999866532 444455666554
No 189
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=82.49 E-value=10 Score=40.87 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001081 521 NAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH 568 (1162)
Q Consensus 521 ~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~ 568 (1162)
+..+...+.......+..++++..+.-+...++.++..|+.+..+++.
T Consensus 132 ~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 132 IKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444445555555555555555555555444443
No 190
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=82.23 E-value=45 Score=44.28 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=31.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001081 595 MDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 632 (1162)
Q Consensus 595 ~d~a~lkkKLEEELkkrd~~ieqL~eEneKL~~~l~~k 632 (1162)
....++..+++++++..+..++++...+.+|...+++.
T Consensus 398 d~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~ 435 (1141)
T KOG0018|consen 398 DHELERRAELEARIKQLKESVERLDKRRNKLAAKITSL 435 (1141)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456778899999999999999999999999888666
No 191
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.10 E-value=1.4e+02 Score=37.32 Aligned_cols=35 Identities=29% Similarity=0.422 Sum_probs=20.4
Q ss_pred hhhhhhhcc-------CChhhhHHHHHHHHhhcccccccccCCCCCCcccc
Q 001081 887 KALAALFVH-------TPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQ 930 (1162)
Q Consensus 887 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1162)
.-||-||-| ||. |-|-.++.|.--| .|..+|..++
T Consensus 492 deLaqlyh~vc~~n~etp~----rvmlD~~~e~~~~-----~ds~~~~~s~ 533 (772)
T KOG0999|consen 492 DELAQLYHHVCECNNETPN----RVMLDYYRETDLR-----NDSPTGIQSP 533 (772)
T ss_pred HHHHHHHHHHHHHcCCCCc----hhhhhhhcccccc-----CCCcccccCc
Confidence 346666544 444 4455555554433 7788887776
No 192
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=81.92 E-value=1.4e+02 Score=40.33 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Q 001081 608 LKKRDALIERLHEENEKLFDRLTEK 632 (1162)
Q Consensus 608 Lkkrd~~ieqL~eEneKL~~~l~~k 632 (1162)
|..+.++|-.|+.+.+.+.+-+..+
T Consensus 1726 L~~~~aeL~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1726 LEDKAAELAGLEKRVESVLDHINER 1750 (1758)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhh
Confidence 3344455555666666666665555
No 193
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=81.88 E-value=1.4e+02 Score=38.26 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 449 DARKELYEREKEIQDLKQEILGLRQALKEANDQ 481 (1162)
Q Consensus 449 ~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq 481 (1162)
...+++..++..-..|+.++..++.++....++
T Consensus 531 ~~~kqie~Lee~~~~Lrneles~~eel~~k~~E 563 (786)
T PF05483_consen 531 KMLKQIENLEETNTQLRNELESVKEELKQKGEE 563 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666554443
No 194
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=81.34 E-value=1.4 Score=51.39 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=30.0
Q ss_pred ceeeCCCCChHHHHHhhHHHHHHHhc-CCceeEeeeccCCCCCcccc
Q 001081 162 DRVYGPHVGQAELFSDVQPFVQSALD-GYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 162 DkVF~~~asQeeVFe~V~PLV~svLd-GyN~~IFAYGQTGSGKTyTM 207 (1162)
+.+.+.-..-++-++.+...+..++. +...+++-||++|+|||+++
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 33333333455555556555555554 45567899999999999986
No 195
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=81.18 E-value=93 Score=35.54 Aligned_cols=67 Identities=21% Similarity=0.223 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 001081 508 YMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRS 574 (1162)
Q Consensus 508 ~~L~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s~e~r~ 574 (1162)
..|..++.+.|....+++.....+..-.+++.+.+..-.++|--|++++++-+.++....+..+..+
T Consensus 239 a~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~s 305 (330)
T KOG2991|consen 239 AELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVS 305 (330)
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666677777777777777777777777777777888888888777766655555444433
No 196
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=81.09 E-value=1.7e+02 Score=37.24 Aligned_cols=80 Identities=20% Similarity=0.224 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcccccccccCCCCCChhHHHHHHHHHHHHHH
Q 001081 533 QLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRD 612 (1162)
Q Consensus 533 q~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s~e~r~~~~~~~~~~~~s~~k~~~~~~d~a~lkkKLEEELkkrd 612 (1162)
..+..+..++.+.+.+|..++..+..-..++-........ +...-...-.-..-++....
T Consensus 189 ~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~de--------------------e~~~k~aev~lim~eLe~aq 248 (629)
T KOG0963|consen 189 DEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDE--------------------EVAAKAAEVSLIMTELEDAQ 248 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh--------------------hhHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666666666666655555544433111 00111122223445667788
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 001081 613 ALIERLHEENEKLFDRLTEK 632 (1162)
Q Consensus 613 ~~ieqL~eEneKL~~~l~~k 632 (1162)
..|..+++|++.|+.++...
T Consensus 249 ~ri~~lE~e~e~L~~ql~~~ 268 (629)
T KOG0963|consen 249 QRIVFLEREVEQLREQLAKA 268 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 88999999999999997555
No 197
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=81.04 E-value=1.6e+02 Score=36.86 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 001081 548 TIKTLQAKINSIESQR 563 (1162)
Q Consensus 548 eIe~L~~eL~eLe~QL 563 (1162)
.+..|+.++..++.++
T Consensus 338 ~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 338 EVSSLEAELNKTRSEL 353 (522)
T ss_pred HHhhHHHHHHHHHHHH
Confidence 3445555555554444
No 198
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=80.92 E-value=38 Score=39.25 Aligned_cols=15 Identities=40% Similarity=0.536 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHh
Q 001081 614 LIERLHEENEKLFDR 628 (1162)
Q Consensus 614 ~ieqL~eEneKL~~~ 628 (1162)
++...|++-.++|+.
T Consensus 187 eaqe~he~m~k~~~~ 201 (294)
T COG1340 187 EAQEYHEEMIKLFEE 201 (294)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444433
No 199
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=80.82 E-value=1e+02 Score=37.54 Aligned_cols=47 Identities=15% Similarity=0.223 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001081 523 QLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 569 (1162)
Q Consensus 523 qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s 569 (1162)
++.++-.+..+......-+.-+.+.++..++.+++--..|+..+...
T Consensus 222 ~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~kt 268 (447)
T KOG2751|consen 222 RLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKT 268 (447)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333344444444444445556666666665555555554444
No 200
>PRK08727 hypothetical protein; Validated
Probab=80.82 E-value=1 Score=49.53 Aligned_cols=45 Identities=24% Similarity=0.345 Sum_probs=27.8
Q ss_pred ceeeeceeeCCCCChHHHHHhhHHHHHHHhcCCc-eeEeeeccCCCCCccccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYN-VSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN-~~IFAYGQTGSGKTyTM~ 208 (1162)
..|+||.-+.... + ....+..+ ..|+. -.|+-||++|+||||.+.
T Consensus 14 ~~~~f~~f~~~~~-n--~~~~~~~~----~~~~~~~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 14 SDQRFDSYIAAPD-G--LLAQLQAL----AAGQSSDWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CcCChhhccCCcH-H--HHHHHHHH----HhccCCCeEEEECCCCCCHHHHHH
Confidence 4578888664333 2 22222222 22332 459999999999999983
No 201
>PRK01156 chromosome segregation protein; Provisional
Probab=80.75 E-value=2e+02 Score=37.92 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=13.5
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
+.+-+|++|||||..+
T Consensus 25 i~~I~G~NGsGKSsil 40 (895)
T PRK01156 25 INIITGKNGAGKSSIV 40 (895)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5678999999999774
No 202
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=80.70 E-value=1e+02 Score=39.55 Aligned_cols=46 Identities=22% Similarity=0.214 Sum_probs=27.5
Q ss_pred hhHhHHHh-hHHHHHhhCccccccCchhHHHHHHHHHHHHHHHHhhcccce
Q 001081 1071 SKKKAMLT-SLDELAERMPSLLDIDHPCAQRQIADARRMVEVLQQMRSDVA 1120 (1162)
Q Consensus 1071 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1120 (1162)
+|+-+-|. -+-..+.||.-|= -|-+-.|-.-|.+|.+|.-.+-|+.
T Consensus 599 ~~ev~qlk~ev~s~ekr~~rlk----~vF~~ki~eFr~ac~sL~Gykid~~ 645 (716)
T KOG4593|consen 599 SKEVAQLKKEVESAEKRNQRLK----EVFASKIQEFRDACYSLLGYKIDFT 645 (716)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 44444332 2333444444443 4777888888999999886665553
No 203
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=80.53 E-value=1.3 Score=49.66 Aligned_cols=49 Identities=22% Similarity=0.144 Sum_probs=34.6
Q ss_pred eeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccccc
Q 001081 159 FEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG 209 (1162)
Q Consensus 159 F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~G 209 (1162)
|.|..+-..+..+..+|..+..+++.+-.|.| ++-||++|+||||...+
T Consensus 76 ~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~n--l~l~G~~G~GKThLa~A 124 (254)
T COG1484 76 FEEFDFEFQPGIDKKALEDLASLVEFFERGEN--LVLLGPPGVGKTHLAIA 124 (254)
T ss_pred cccccccCCcchhHHHHHHHHHHHHHhccCCc--EEEECCCCCcHHHHHHH
Confidence 33333333445678888888888777764444 67799999999998844
No 204
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.42 E-value=1.2e+02 Score=35.00 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 456 EREKEIQDLKQEILGLRQALKEAN 479 (1162)
Q Consensus 456 ~l~~eI~eLk~Ei~~Lr~~L~~~~ 479 (1162)
+.+++|.+++.++..|+.++...+
T Consensus 70 ~~~~~i~~~~~eik~l~~eI~~~~ 93 (265)
T COG3883 70 ELQKEIDQSKAEIKKLQKEIAELK 93 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443333
No 205
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=80.15 E-value=95 Score=37.63 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=9.4
Q ss_pred hCCCCcccccchhhccc
Q 001081 709 NDFNPEQYDNLAVISDG 725 (1162)
Q Consensus 709 ~~~~~~~~~~~~~~~~~ 725 (1162)
+||||+-|--+||-.|+
T Consensus 225 ~d~d~~~~~~iAas~d~ 241 (459)
T KOG0288|consen 225 IDFDSDNKHVIAASNDK 241 (459)
T ss_pred eeecCCCceEEeecCCC
Confidence 45555555555555555
No 206
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=79.98 E-value=51 Score=40.69 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=13.4
Q ss_pred ccccCchhhHHHhhhCCCCccc
Q 001081 695 IKTTPAGEYLTAALNDFNPEQY 716 (1162)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~ 716 (1162)
.+-+|---.|-+||.+..-++|
T Consensus 431 ~~~~p~Ss~~~s~L~rL~re~y 452 (596)
T KOG4360|consen 431 MPGQPGSSDLGSALQRLSRENY 452 (596)
T ss_pred CCCCCCCchHHHHHHHHHHHhh
Confidence 4556666667777776554444
No 207
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=79.87 E-value=69 Score=36.00 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 520 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 560 (1162)
Q Consensus 520 e~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe 560 (1162)
.+..+...+.+........+..+..+..+..-|..++++++
T Consensus 61 DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 61 DINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334333433333333333333333334444444444444
No 208
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=79.86 E-value=75 Score=35.60 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001081 458 EKEIQDLKQEILGLRQALKEAND 480 (1162)
Q Consensus 458 ~~eI~eLk~Ei~~Lr~~L~~~~e 480 (1162)
+..|++.+.++..++..+.....
T Consensus 30 ~Q~ird~~~~l~~ar~~~A~~~a 52 (225)
T COG1842 30 EQAIRDMESELAKARQALAQAIA 52 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555444333
No 209
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=79.82 E-value=33 Score=43.05 Aligned_cols=10 Identities=40% Similarity=0.733 Sum_probs=4.3
Q ss_pred eCCCcEEEEe
Q 001081 137 FTDDCTIRVN 146 (1162)
Q Consensus 137 ~~d~~tI~v~ 146 (1162)
+.|...|.|.
T Consensus 134 fEdeT~I~Vs 143 (652)
T COG2433 134 FEDETKITVS 143 (652)
T ss_pred eeeeeEEEEE
Confidence 3444444443
No 210
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=79.82 E-value=1e+02 Score=33.88 Aligned_cols=50 Identities=26% Similarity=0.408 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 446 IANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKV 495 (1162)
Q Consensus 446 i~~~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk~~k~ 495 (1162)
++.+....+...-.||+.|++.+.+|+..-++..+-|-++..+-|+..+.
T Consensus 42 lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrkl 91 (195)
T PF10226_consen 42 LMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKL 91 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHH
Confidence 44444445555566777787777777777666666666666555554443
No 211
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=79.68 E-value=1 Score=45.56 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=20.2
Q ss_pred HHHHHHhcC-CceeEeeeccCCCCCcccccc
Q 001081 180 PFVQSALDG-YNVSIFAYGQTHSGKTHTMEG 209 (1162)
Q Consensus 180 PLV~svLdG-yN~~IFAYGQTGSGKTyTM~G 209 (1162)
.+++.+-.+ .+.-++..++||||||++|..
T Consensus 14 ~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 14 RIINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 334444433 355666778999999999963
No 212
>PRK08939 primosomal protein DnaI; Reviewed
Probab=79.60 E-value=1 Score=51.78 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=35.0
Q ss_pred eeeeceeeCCCCChHHHHHhhHHHHHHHhcC-CceeEeeeccCCCCCcccccc
Q 001081 158 DFEFDRVYGPHVGQAELFSDVQPFVQSALDG-YNVSIFAYGQTHSGKTHTMEG 209 (1162)
Q Consensus 158 ~F~FDkVF~~~asQeeVFe~V~PLV~svLdG-yN~~IFAYGQTGSGKTyTM~G 209 (1162)
..+||.+-..+..+..++..+...++....| ..-.++-||++|+||||.+.+
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 3456655433335666776656666666543 234699999999999999854
No 213
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=79.59 E-value=4.1 Score=46.12 Aligned_cols=74 Identities=24% Similarity=0.416 Sum_probs=46.5
Q ss_pred eeeeceeeCCCCChHHHHHhh-HHHHHHHhc---CCc--eeEeeeccCCCCCcccccc--------------CC---CCC
Q 001081 158 DFEFDRVYGPHVGQAELFSDV-QPFVQSALD---GYN--VSIFAYGQTHSGKTHTMEG--------------SS---HDR 214 (1162)
Q Consensus 158 ~F~FDkVF~~~asQeeVFe~V-~PLV~svLd---GyN--~~IFAYGQTGSGKTyTM~G--------------s~---~d~ 214 (1162)
..++..|=+-+..-++|-+.| -|+...-+- |.+ -.|+.||+.|+|||...-. +. .--
T Consensus 151 dvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkyl 230 (408)
T KOG0727|consen 151 DVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYL 230 (408)
T ss_pred CccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHh
Confidence 344555666666666777766 466655431 333 3589999999999854422 11 013
Q ss_pred ChHHHHHHHHHHhhccc
Q 001081 215 GLYARCFEELFDLSNSD 231 (1162)
Q Consensus 215 GIIPRaledLF~~i~~~ 231 (1162)
|==||.++++|....+.
T Consensus 231 gegprmvrdvfrlaken 247 (408)
T KOG0727|consen 231 GEGPRMVRDVFRLAKEN 247 (408)
T ss_pred ccCcHHHHHHHHHHhcc
Confidence 55589999999876543
No 214
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=79.52 E-value=95 Score=38.10 Aligned_cols=10 Identities=50% Similarity=0.607 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 001081 70 DEIKFVKEDY 79 (1162)
Q Consensus 70 ~~l~~~k~~~ 79 (1162)
.+++.++.+.
T Consensus 37 nEikNvkRen 46 (527)
T PF15066_consen 37 NEIKNVKREN 46 (527)
T ss_pred HHhhhhhccC
Confidence 4555555443
No 215
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=79.40 E-value=1.6e+02 Score=35.86 Aligned_cols=33 Identities=6% Similarity=0.030 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001081 538 QKMQIQQRDSTIKTLQAKINSIESQRNEALHSS 570 (1162)
Q Consensus 538 ~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s~ 570 (1162)
..+++.+.-.+-...++++..|..+|...+.+.
T Consensus 276 ~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erR 308 (552)
T KOG2129|consen 276 YQEKLMQYRAEEVDHREENERLQRKLINELERR 308 (552)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555666666665555444443
No 216
>PRK11281 hypothetical protein; Provisional
Probab=79.26 E-value=1.9e+02 Score=39.54 Aligned_cols=31 Identities=26% Similarity=0.253 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 536 QEQKMQIQQRDSTIKTLQAKINSIESQRNEA 566 (1162)
Q Consensus 536 eE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~ 566 (1162)
+..+.++++.+..++.|++.+++.+.+..+.
T Consensus 230 d~~~~~~~~~~~~~~~lq~~in~kr~~~se~ 260 (1113)
T PRK11281 230 DYLTARIQRLEHQLQLLQEAINSKRLTLSEK 260 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566666777777777777766554443
No 217
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=78.69 E-value=73 Score=31.62 Aligned_cols=33 Identities=18% Similarity=0.392 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001081 536 QEQKMQIQQRDSTIKTLQAKINSIESQRNEALH 568 (1162)
Q Consensus 536 eE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~ 568 (1162)
.+...+|..+..+|..++.++..++..+.....
T Consensus 77 ~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~ 109 (126)
T PF13863_consen 77 EEKEAEIKKLKAELEELKSEISKLEEKLEEYKK 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556666666666666655554433
No 218
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=78.53 E-value=1.1e+02 Score=39.21 Aligned_cols=58 Identities=24% Similarity=0.424 Sum_probs=39.0
Q ss_pred chhhhHHHHHhhhhhhhHHHHHHHHHhhccceeeecccCCCCCCCCCchhhhhhhhhhhcHHHHHH-HHHHHHhhc
Q 001081 989 EDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASLISLDGILN-QVKDAVRQS 1063 (1162)
Q Consensus 989 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 1063 (1162)
|.+.-|-++|-.||-++|+-.-+||-|--- ---+|+-|| -|..|.++|| |+.+++++.
T Consensus 901 ek~~~~p~~~~~ledL~qRy~a~LqmyGEk----------------~Ee~EELrl-Dl~dlK~mYk~QIdeLl~~~ 959 (961)
T KOG4673|consen 901 EKADRVPGIKAELEDLRQRYAAALQMYGEK----------------DEELEELRL-DLVDLKEMYKEQIDELLNKI 959 (961)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhcch----------------HHHHHHHHh-hHHHHHHHHHHHHHHHHhcc
Confidence 456678899999999999999999876321 123566665 4666666665 555555543
No 219
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=78.42 E-value=1.1e+02 Score=35.79 Aligned_cols=18 Identities=50% Similarity=0.591 Sum_probs=8.5
Q ss_pred hHHHhHHHHHHHHHHHHH
Q 001081 503 LKSENYMLADKHKIEKEQ 520 (1162)
Q Consensus 503 Lk~e~~~L~~k~k~~kEe 520 (1162)
|+.++.+|..+++.++..
T Consensus 68 L~aENt~L~SkLe~EKq~ 85 (305)
T PF14915_consen 68 LKAENTMLNSKLEKEKQN 85 (305)
T ss_pred HHHHHHHHhHHHHHhHHH
Confidence 444555555554444333
No 220
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=78.41 E-value=93 Score=37.18 Aligned_cols=61 Identities=5% Similarity=0.196 Sum_probs=31.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 505 SENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 565 (1162)
Q Consensus 505 ~e~~~L~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e 565 (1162)
+....++.+++.+..+..+.+.++.+....+.+....+.++..++..+.++++..+.++.+
T Consensus 259 sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 259 SREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444555555555555555555555555555555555555555555543
No 221
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.18 E-value=33 Score=40.00 Aligned_cols=19 Identities=0% Similarity=0.085 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001081 542 IQQRDSTIKTLQAKINSIE 560 (1162)
Q Consensus 542 iqq~e~eIe~L~~eL~eLe 560 (1162)
....+..++...+.+..|+
T Consensus 115 ~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 115 RDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444
No 222
>PRK10884 SH3 domain-containing protein; Provisional
Probab=77.80 E-value=36 Score=37.60 Aligned_cols=29 Identities=10% Similarity=0.305 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 449 DARKELYEREKEIQDLKQEILGLRQALKE 477 (1162)
Q Consensus 449 ~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~ 477 (1162)
.++..+..+++++.+|+.++..+.....+
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~ 118 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQ 118 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34556667778888888888777776553
No 223
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=77.69 E-value=73 Score=42.26 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=12.7
Q ss_pred eeeccCCCCCccccc
Q 001081 194 FAYGQTHSGKTHTME 208 (1162)
Q Consensus 194 FAYGQTGSGKTyTM~ 208 (1162)
|-.|+.||||+..+.
T Consensus 46 mIiGpNGSGKSSiVc 60 (1072)
T KOG0979|consen 46 MIIGPNGSGKSSIVC 60 (1072)
T ss_pred eEECCCCCCchHHHH
Confidence 677999999998764
No 224
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=77.65 E-value=1.4e+02 Score=37.47 Aligned_cols=47 Identities=11% Similarity=0.139 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 519 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 565 (1162)
Q Consensus 519 Ee~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e 565 (1162)
++..++..++..+.....+....+..+.......++++..++.++.+
T Consensus 383 e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ 429 (569)
T PRK04778 383 EELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHE 429 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445555555544444455555555544443
No 225
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=77.60 E-value=1.8e+02 Score=35.55 Aligned_cols=50 Identities=12% Similarity=0.076 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 517 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 566 (1162)
Q Consensus 517 ~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~ 566 (1162)
..+.++.++.++...++....+...+..+.++-+.-++-+++|.+++...
T Consensus 337 ~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehl 386 (502)
T KOG0982|consen 337 SSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHL 386 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555566666666666566666666666666543
No 226
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=77.45 E-value=98 Score=32.44 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 456 EREKEIQDLKQEILGLRQALKEANDQCVLL 485 (1162)
Q Consensus 456 ~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l 485 (1162)
+...+-..|+..+..|...|...+.....+
T Consensus 14 ~~~~e~dsle~~v~~LEreLe~~q~~~e~~ 43 (140)
T PF10473_consen 14 ESESEKDSLEDHVESLERELEMSQENKECL 43 (140)
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHhHHHH
Confidence 344444555555666665555544443333
No 227
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=77.39 E-value=1.9 Score=51.04 Aligned_cols=33 Identities=36% Similarity=0.605 Sum_probs=23.5
Q ss_pred HHhhHHHHHHHhcCCce-eEeeeccCCCCCcccc
Q 001081 175 FSDVQPFVQSALDGYNV-SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 175 Fe~V~PLV~svLdGyN~-~IFAYGQTGSGKTyTM 207 (1162)
++.+..++..++.|.-. .++.||.||+|||.|+
T Consensus 26 i~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 26 INQLASFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 33444555666655443 4999999999999987
No 228
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=77.33 E-value=1.2e+02 Score=39.10 Aligned_cols=48 Identities=8% Similarity=0.156 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 517 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 564 (1162)
Q Consensus 517 ~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~ 564 (1162)
++.+.+....++.++.....+....+........-+++++..|+.++.
T Consensus 571 Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle 618 (698)
T KOG0978|consen 571 LQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLE 618 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445454444444444444444444455555555554443
No 229
>PRK08181 transposase; Validated
Probab=77.33 E-value=1.2 Score=50.43 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=17.7
Q ss_pred cCCceeEeeeccCCCCCcccccc
Q 001081 187 DGYNVSIFAYGQTHSGKTHTMEG 209 (1162)
Q Consensus 187 dGyN~~IFAYGQTGSGKTyTM~G 209 (1162)
.|.| |+-||++|+||||.+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 4555 89999999999999865
No 230
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=77.25 E-value=1.9e+02 Score=36.52 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=9.6
Q ss_pred CChHHHH---HHHHHHhhcc
Q 001081 214 RGLYARC---FEELFDLSNS 230 (1162)
Q Consensus 214 ~GIIPRa---ledLF~~i~~ 230 (1162)
+|+.+++ .+++|+.++.
T Consensus 171 kG~t~~~v~s~d~v~~~i~~ 190 (607)
T KOG0240|consen 171 KGVTERFVSSPDEVLDVIDE 190 (607)
T ss_pred cCceeEEecCHHHHHHHHhc
Confidence 4555444 4667776653
No 231
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=77.13 E-value=1.6e+02 Score=37.12 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=14.7
Q ss_pred hHHHHHHHhhhHHHHhHhcCcccchhh
Q 001081 745 EHEILAEIRDAVFAFIRKMEPTRVMDT 771 (1162)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (1162)
-++|=+.+..|-.-| |.-+=.+.+|+
T Consensus 516 ~~~V~~~f~~Ae~lF-~~~~Y~~al~~ 541 (569)
T PRK04778 516 NEEVAEALNEAERLF-REYDYKAALEI 541 (569)
T ss_pred CHHHHHHHHHHHHHH-HhCChHHHHHH
Confidence 344555555666666 66665555554
No 232
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.12 E-value=1e+02 Score=38.51 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 449 DARKELYEREKEIQDLKQEILGLRQALKEA 478 (1162)
Q Consensus 449 ~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~ 478 (1162)
++.+...+++.+....+.|++.+++.+.+.
T Consensus 47 ~Lkqq~eEleaeyd~~R~Eldqtkeal~q~ 76 (772)
T KOG0999|consen 47 DLKQQLEELEAEYDLARTELDQTKEALGQY 76 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666677777777777666544
No 233
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=76.78 E-value=1.6 Score=52.33 Aligned_cols=50 Identities=20% Similarity=0.357 Sum_probs=30.9
Q ss_pred ceeeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
..|+||...... ++...|.....+ ...-.+.---+|-||.+|+||||.|.
T Consensus 82 ~~ytFdnFv~g~-~N~~A~aa~~~v-a~~~g~~~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 82 PKYTFDNFVVGP-SNRLAYAAAKAV-AENPGGAYNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCchhheeeCC-chHHHHHHHHHH-HhccCCcCCcEEEECCCCCCHHHHHH
Confidence 679999855543 344444432222 22222223358999999999999984
No 234
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=76.53 E-value=98 Score=31.96 Aligned_cols=20 Identities=35% Similarity=0.569 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001081 600 VSKKLEEELKKRDALIERLH 619 (1162)
Q Consensus 600 lkkKLEEELkkrd~~ieqL~ 619 (1162)
+..+.+-++++++.++++|+
T Consensus 127 ~~tq~~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 127 RKTQYEHELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44466667777776666444
No 235
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=75.95 E-value=1.5e+02 Score=39.45 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHhhccccchhhhhHhHHHhhHHHHHhhCccccccCchhHHH
Q 001081 1048 SLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQR 1100 (1162)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1100 (1162)
.|+++.+++++++.+...---+-.++++...-++...|+.- ..-|||+-+
T Consensus 855 el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~---~lek~~~~~ 904 (1200)
T KOG0964|consen 855 ELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAK---NLEKEKKDN 904 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhh
Confidence 35666777777766655333333455555555555544433 335677766
No 236
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=75.80 E-value=2.6e+02 Score=36.50 Aligned_cols=52 Identities=31% Similarity=0.334 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 510 LADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 565 (1162)
Q Consensus 510 L~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e 565 (1162)
+..-...+.++|..|++++.-+.+-+-+ ....+-+|.-+.+++.-|+.|+.+
T Consensus 95 ll~dyselEeENislQKqvs~Lk~sQve----fE~~Khei~rl~Ee~~~l~~qlee 146 (717)
T PF09730_consen 95 LLQDYSELEEENISLQKQVSVLKQSQVE----FEGLKHEIKRLEEEIELLNSQLEE 146 (717)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445677888888888877643332 223333444444444555555544
No 237
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=75.56 E-value=2.5e+02 Score=37.75 Aligned_cols=7 Identities=14% Similarity=0.145 Sum_probs=3.8
Q ss_pred eEEEEEE
Q 001081 241 AVTVFEL 247 (1162)
Q Consensus 241 ~VS~lEI 247 (1162)
...|+||
T Consensus 88 ~~g~IEI 94 (1072)
T KOG0979|consen 88 DEGYIEI 94 (1072)
T ss_pred ccceEEE
Confidence 3356666
No 238
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=75.56 E-value=1.4 Score=54.86 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=24.6
Q ss_pred HHHHHhcCCceeEeeeccCCCCCcccccc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTMEG 209 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM~G 209 (1162)
.+..++..-++.|+..|+||||||.||+.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 45667777889999999999999999853
No 239
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=75.50 E-value=1.3e+02 Score=32.95 Aligned_cols=20 Identities=35% Similarity=0.513 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 001081 613 ALIERLHEENEKLFDRLTEK 632 (1162)
Q Consensus 613 ~~ieqL~eEneKL~~~l~~k 632 (1162)
..+..++.|+..|.+.+.+|
T Consensus 171 ~~~~~l~~ei~~L~~klkEK 190 (194)
T PF15619_consen 171 EEVKSLQEEIQRLNQKLKEK 190 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666555
No 240
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=75.46 E-value=2.1 Score=40.71 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=15.9
Q ss_pred CceeEeeeccCCCCCcccc
Q 001081 189 YNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 189 yN~~IFAYGQTGSGKTyTM 207 (1162)
....++-+|++|+|||+++
T Consensus 18 ~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4457889999999999876
No 241
>PRK10436 hypothetical protein; Provisional
Probab=75.45 E-value=1.5 Score=53.45 Aligned_cols=28 Identities=36% Similarity=0.293 Sum_probs=23.9
Q ss_pred HHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
.+..++..-++.|+..|+||||||.||+
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 4556667788999999999999999995
No 242
>PRK06921 hypothetical protein; Provisional
Probab=75.37 E-value=2.2 Score=48.20 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=25.5
Q ss_pred HHHHhhHHHHHHHhc---CCceeEeeeccCCCCCcccccc
Q 001081 173 ELFSDVQPFVQSALD---GYNVSIFAYGQTHSGKTHTMEG 209 (1162)
Q Consensus 173 eVFe~V~PLV~svLd---GyN~~IFAYGQTGSGKTyTM~G 209 (1162)
.++..+...++++-+ +....++-||++|+||||.+..
T Consensus 97 ~~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 97 DAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 355545566666532 2345688999999999999843
No 243
>PRK06526 transposase; Provisional
Probab=74.93 E-value=1.5 Score=49.29 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=17.4
Q ss_pred cCCceeEeeeccCCCCCcccccc
Q 001081 187 DGYNVSIFAYGQTHSGKTHTMEG 209 (1162)
Q Consensus 187 dGyN~~IFAYGQTGSGKTyTM~G 209 (1162)
.+.| |+.||++|+||||...+
T Consensus 97 ~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 97 GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred cCce--EEEEeCCCCchHHHHHH
Confidence 3454 79999999999999864
No 244
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=74.89 E-value=40 Score=41.13 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=13.9
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
.|+-||++|+|||++.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777999999999876
No 245
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=74.75 E-value=2.6e+02 Score=36.07 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 001081 613 ALIERLHEENEKLFDRLTEK 632 (1162)
Q Consensus 613 ~~ieqL~eEneKL~~~l~~k 632 (1162)
....-++.+|.++..++++-
T Consensus 299 ~~~~~LELeN~~l~tkL~rw 318 (716)
T KOG4593|consen 299 STLLGLELENEDLLTKLQRW 318 (716)
T ss_pred HHHhhHHHHHHHHHHHHHHH
Confidence 33344778899998888554
No 246
>PF15294 Leu_zip: Leucine zipper
Probab=74.53 E-value=90 Score=36.09 Aligned_cols=35 Identities=31% Similarity=0.354 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 457 REKEIQDLKQEILGLRQALKEANDQCVLLYNEVQK 491 (1162)
Q Consensus 457 l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk 491 (1162)
+.++|.+|+.|++.|+..+...+.+|.....|-.+
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~k 164 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSK 164 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999988888766554433
No 247
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=74.51 E-value=69 Score=36.94 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001081 526 NQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH 568 (1162)
Q Consensus 526 ~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~ 568 (1162)
..+.|+.+..+-++..+.+++.-|+.|-..|+--+.+|.-++.
T Consensus 124 kEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLq 166 (305)
T PF15290_consen 124 KEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQ 166 (305)
T ss_pred HHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHH
Confidence 3344444445555666666666666666655555555544444
No 248
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=74.43 E-value=88 Score=34.64 Aligned_cols=11 Identities=45% Similarity=0.758 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 001081 466 QEILGLRQALK 476 (1162)
Q Consensus 466 ~Ei~~Lr~~L~ 476 (1162)
.||..||..+.
T Consensus 31 ~Eiv~Lr~ql~ 41 (202)
T PF06818_consen 31 SEIVSLRAQLR 41 (202)
T ss_pred hHHHHHHHHHH
Confidence 33333333333
No 249
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=74.38 E-value=2.4 Score=51.39 Aligned_cols=51 Identities=25% Similarity=0.378 Sum_probs=34.9
Q ss_pred CceeeeceeeCCCCChHHHHHhhHHHHHHH--hcC--CceeEeeeccCCCCCccccc
Q 001081 156 KKDFEFDRVYGPHVGQAELFSDVQPFVQSA--LDG--YNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 156 ~k~F~FDkVF~~~asQeeVFe~V~PLV~sv--LdG--yN~~IFAYGQTGSGKTyTM~ 208 (1162)
...|+||.-... .++...|..+..+.+.. ..| || .+|-||++|+||||.+.
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~~a~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHRILQEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQ 159 (445)
T ss_pred CccccccceeeC-CcHHHHHHHHHHHHhccccccCCCCc-eEEEEcCCCCCHHHHHH
Confidence 467999986653 35666676665555433 223 45 36789999999999983
No 250
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=74.22 E-value=1.1e+02 Score=34.51 Aligned_cols=65 Identities=15% Similarity=0.211 Sum_probs=43.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001081 505 SENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 569 (1162)
Q Consensus 505 ~e~~~L~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s 569 (1162)
.+...|.......-+++.+....+..+.....+.+.+.......|..+..++..|+.++++...+
T Consensus 39 kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 39 KEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445566666667777777777777777777777888888888888888776555
No 251
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=74.03 E-value=1.4e+02 Score=33.02 Aligned_cols=111 Identities=11% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 001081 457 REKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKI-EKEQNAQLRNQVAQLLQLE 535 (1162)
Q Consensus 457 l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk~~k~~~elq~~Lk~e~~~L~~k~k~-~kEe~~qL~~ql~qllq~e 535 (1162)
++.-|++++..+...+..+.........+..++..........+.....-...=.+.+-. --++......++..+....
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~ 108 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALEREL 108 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001081 536 QEQKMQIQQRDSTIKTLQAKINSIESQRNEAL 567 (1162)
Q Consensus 536 eE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~ 567 (1162)
..++..+.+++..+..|+.++.+++.+...+.
T Consensus 109 ~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ 140 (219)
T TIGR02977 109 AAVEETLAKLQEDIAKLQAKLAEARARQKALA 140 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 252
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=73.96 E-value=1.4 Score=41.51 Aligned_cols=17 Identities=29% Similarity=0.167 Sum_probs=14.7
Q ss_pred EeeeccCCCCCcccccc
Q 001081 193 IFAYGQTHSGKTHTMEG 209 (1162)
Q Consensus 193 IFAYGQTGSGKTyTM~G 209 (1162)
++.+|+||||||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57899999999999954
No 253
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=73.83 E-value=98 Score=40.56 Aligned_cols=38 Identities=21% Similarity=0.425 Sum_probs=25.0
Q ss_pred hhccCC-hhhhHHHHHHHHhhcccccccccCCCCCCccc
Q 001081 892 LFVHTP-AGELQRQIRSWLAENFEFLSVTGDDASGGTTG 929 (1162)
Q Consensus 892 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1162)
++||-- -|-|++.|+.||..+=...+..-....-|..|
T Consensus 737 ~IIHGkGtG~Lr~~v~~~L~~~~~V~~f~~a~~~~GG~G 775 (782)
T PRK00409 737 LIIHGKGTGKLRKGVQEFLKKHPSVKSFRDAPPNEGGFG 775 (782)
T ss_pred EEEcCCChhHHHHHHHHHHcCCCceeeeeecCcccCCCe
Confidence 456643 28899999999998766555555444444444
No 254
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=73.79 E-value=1.5 Score=56.85 Aligned_cols=36 Identities=28% Similarity=0.496 Sum_probs=25.3
Q ss_pred HHHHHhhHHHHHHHhc--CCceeEeeeccCCCCCcccc
Q 001081 172 AELFSDVQPFVQSALD--GYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 172 eeVFe~V~PLV~svLd--GyN~~IFAYGQTGSGKTyTM 207 (1162)
++=++.+..++..++. |-+.|+|-||++|+|||.|+
T Consensus 761 EeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 761 EKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 3334445555566664 44567899999999999998
No 255
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.72 E-value=56 Score=40.63 Aligned_cols=77 Identities=21% Similarity=0.215 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHHHH
Q 001081 537 EQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIE 616 (1162)
Q Consensus 537 E~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s~e~r~~~~~~~~~~~~s~~k~~~~~~d~a~lkkKLEEELkkrd~~ie 616 (1162)
+..++|.+.+.+...|.+++..+...+.+...+.-. +.++...-++-..++.-+|+-++=.||
T Consensus 328 E~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~d-----------------lkehassLas~glk~ds~Lk~leIalE 390 (654)
T KOG4809|consen 328 ERLEEIESFRKENKDLKEKVNALQAELTEKESSLID-----------------LKEHASSLASAGLKRDSKLKSLEIALE 390 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 344555555555666666665555544433322211 111111222333455666777777777
Q ss_pred HHHHHHHHHHHhhc
Q 001081 617 RLHEENEKLFDRLT 630 (1162)
Q Consensus 617 qL~eEneKL~~~l~ 630 (1162)
+.+++..|+-..|.
T Consensus 391 qkkEec~kme~qLk 404 (654)
T KOG4809|consen 391 QKKEECSKMEAQLK 404 (654)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777776663
No 256
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=73.60 E-value=1.8 Score=52.93 Aligned_cols=29 Identities=28% Similarity=0.239 Sum_probs=24.4
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
..+..++...++.|+..|+||||||.||.
T Consensus 232 ~~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 232 SRFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 35566677788899999999999999995
No 257
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=73.32 E-value=1.3e+02 Score=34.58 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 001081 545 RDSTIKTLQAKINSI 559 (1162)
Q Consensus 545 ~e~eIe~L~~eL~eL 559 (1162)
+..+...++.+|+.|
T Consensus 282 ~~~~~~~l~~ei~~L 296 (297)
T PF02841_consen 282 FQEEAEKLQKEIQDL 296 (297)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 445555555555554
No 258
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=73.21 E-value=1.8e+02 Score=35.64 Aligned_cols=100 Identities=13% Similarity=0.135 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001081 454 LYEREKEIQDLKQEILGLRQALKEA-----NDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQV 528 (1162)
Q Consensus 454 l~~l~~eI~eLk~Ei~~Lr~~L~~~-----~eq~~~l~~Elqk~~k~~~elq~~Lk~e~~~L~~k~k~~kEe~~qL~~ql 528 (1162)
.+.+-..+.+|+.-|+.||.....- ..+...+..++....+....++..+..+.-.|..-++.+-+.+++-+..+
T Consensus 215 sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL 294 (424)
T PF03915_consen 215 SDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFL 294 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666554221 12233344555555566666777777777777777777666666665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 529 AQLLQLEQEQKMQIQQRDSTIKTLQ 553 (1162)
Q Consensus 529 ~qllq~eeE~k~qiqq~e~eIe~L~ 553 (1162)
..-..+..++++.+....++...++
T Consensus 295 ~~QedL~~DL~eDl~k~~etf~lve 319 (424)
T PF03915_consen 295 KLQEDLLSDLKEDLKKASETFALVE 319 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455554444444444333
No 259
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=73.20 E-value=1.6e+02 Score=32.86 Aligned_cols=28 Identities=29% Similarity=0.551 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001081 603 KLEEELKKRDALIERLHEENEKLFDRLT 630 (1162)
Q Consensus 603 KLEEELkkrd~~ieqL~eEneKL~~~l~ 630 (1162)
+|+++|.........+..+.+..+..|.
T Consensus 208 ~le~eL~~~k~~~~~~~~eld~~l~el~ 235 (237)
T PF00261_consen 208 RLEDELEKEKEKYKKVQEELDQTLNELN 235 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666666666666666666666666553
No 260
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=72.63 E-value=2.7e+02 Score=38.07 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 538 QKMQIQQRDSTIKTLQAKINSIESQRNEA 566 (1162)
Q Consensus 538 ~k~qiqq~e~eIe~L~~eL~eLe~QL~e~ 566 (1162)
.+.++++.+..++.|++.+++.+.+..|.
T Consensus 213 ~~~~~~~l~~~~~~Lq~~in~kR~~~se~ 241 (1109)
T PRK10929 213 AKKRSQQLDAYLQALRNQLNSQRQREAER 241 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666777777766666554443
No 261
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=72.35 E-value=1.1e+02 Score=39.32 Aligned_cols=33 Identities=30% Similarity=0.379 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001081 598 SAVSKKLEEELKKRDALIERLHEENEKLFDRLT 630 (1162)
Q Consensus 598 a~lkkKLEEELkkrd~~ieqL~eEneKL~~~l~ 630 (1162)
....++|.++..++-+.++-+......|++++.
T Consensus 232 ~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l~ 264 (660)
T KOG4302|consen 232 DKMVKKLKEEKKQRLQKLQDLRTKLLELWNLLD 264 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 355677888888888888888888889999873
No 262
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=72.32 E-value=1.1e+02 Score=39.41 Aligned_cols=16 Identities=25% Similarity=0.356 Sum_probs=10.6
Q ss_pred hhhhhhhccCCCCCCC
Q 001081 937 AIMDGWMAGLGGAVPP 952 (1162)
Q Consensus 937 ~~~~~~~~~~~~~~~~ 952 (1162)
-|-.-|.--||.|++-
T Consensus 676 wigneWLPslGLpQYr 691 (916)
T KOG0249|consen 676 WIGNEWLPSLGLPQYR 691 (916)
T ss_pred eeccccccccCchHHH
Confidence 3445688888877654
No 263
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=72.29 E-value=3.5e+02 Score=36.64 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 452 KELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQK 491 (1162)
Q Consensus 452 ~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk 491 (1162)
+.++..+.....++.+++.++.++...+........|+++
T Consensus 310 k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~ 349 (1141)
T KOG0018|consen 310 KDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEE 349 (1141)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555566666666655554444444444433
No 264
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=72.17 E-value=2.1 Score=48.47 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=27.1
Q ss_pred eeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 160 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 160 ~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
+||.+.+ |.++.+.+..++. .|....++-||++|+|||++.
T Consensus 13 ~~~~~~g----~~~~~~~L~~~~~---~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 13 LLEDILG----QDEVVERLSRAVD---SPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred cHHHhcC----CHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHH
Confidence 4666654 5556555544433 344345788999999999987
No 265
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=72.16 E-value=2.6e+02 Score=36.27 Aligned_cols=33 Identities=33% Similarity=0.448 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHhccchhHHHHHHHhhhHHHHhHhcCcccchh
Q 001081 727 NKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMD 770 (1162)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (1162)
||++++++++|+=- +=+..+.|++-|=-++|.+
T Consensus 429 ~~~~~l~~~~~~gl-----------~lg~~~a~l~e~~d~~i~s 461 (754)
T TIGR01005 429 KKGPIVGLAAVLGL-----------LLGAIFALLRELFSGRAMR 461 (754)
T ss_pred chHHHHHHHHHHHH-----------HHHHHHHHHHHHHhcccCC
Confidence 77777777665432 2245577777664444433
No 266
>PLN03188 kinesin-12 family protein; Provisional
Probab=72.13 E-value=3.3e+02 Score=37.53 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=33.0
Q ss_pred HhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 500 QSDLKSENYMLADKHKIEKEQNAQLRNQVAQLL----------QLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 564 (1162)
Q Consensus 500 q~~Lk~e~~~L~~k~k~~kEe~~qL~~ql~qll----------q~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~ 564 (1162)
..+|..+...|..+|....|-+.+..+..+..= .+-.|+-.--.+++.+.+-|+.+.+.|+.||+
T Consensus 1116 ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlr 1190 (1320)
T PLN03188 1116 YADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLR 1190 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 345555555666666666665555543322110 11112222223455666667777777777775
No 267
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=71.50 E-value=71 Score=36.88 Aligned_cols=41 Identities=20% Similarity=0.181 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 520 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 560 (1162)
Q Consensus 520 e~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe 560 (1162)
++.||+.-++-+..-..+...-|++.--.|+....+++.|=
T Consensus 125 EIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLL 165 (305)
T PF15290_consen 125 EIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLL 165 (305)
T ss_pred HHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHH
Confidence 33344444444443333434444444444444444444443
No 268
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=71.45 E-value=1.9e+02 Score=33.07 Aligned_cols=8 Identities=25% Similarity=0.497 Sum_probs=5.4
Q ss_pred ccccCchh
Q 001081 695 IKTTPAGE 702 (1162)
Q Consensus 695 ~~~~~~~~ 702 (1162)
+..||+..
T Consensus 239 ~pltp~aR 246 (333)
T KOG1853|consen 239 VPLTPDAR 246 (333)
T ss_pred CCCCchhh
Confidence 66777765
No 269
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=71.31 E-value=2.4 Score=42.68 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=20.5
Q ss_pred HHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
++..+..|.| ++..|+||||||....
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHH
Confidence 4455567777 7789999999999874
No 270
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=71.09 E-value=2.1e+02 Score=35.80 Aligned_cols=15 Identities=33% Similarity=0.275 Sum_probs=7.5
Q ss_pred hcchhhhhhhhccCC
Q 001081 883 ATGNKALAALFVHTP 897 (1162)
Q Consensus 883 ~~~~~~~~~~~~~~~ 897 (1162)
-+|-.++--|=||.-
T Consensus 295 ~~g~~~~~~~~~~~~ 309 (514)
T TIGR03319 295 EEGEQAAFDLGVHGL 309 (514)
T ss_pred HHHHHHHHHhCCCcC
Confidence 345555555555544
No 271
>PF13245 AAA_19: Part of AAA domain
Probab=71.06 E-value=2.3 Score=39.27 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=17.9
Q ss_pred HHHHhcCCceeEeeeccCCCCCcccc
Q 001081 182 VQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 182 V~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
|..++. -+..+...|+.|||||+|+
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~ 27 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTL 27 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHH
Confidence 444555 3444555899999999998
No 272
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=70.87 E-value=1.4 Score=42.72 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=13.3
Q ss_pred ceeEeeeccCCCCCcccc
Q 001081 190 NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 190 N~~IFAYGQTGSGKTyTM 207 (1162)
+.+++.+|.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 468999999999999987
No 273
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=70.81 E-value=1.4e+02 Score=36.41 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=9.3
Q ss_pred CCHHHHHHHhHHHHHhhhcc
Q 001081 412 ANMSETLSSLNFSSRARSTV 431 (1162)
Q Consensus 412 ~n~eETLsTLrFAsRAr~I~ 431 (1162)
.+..+-..+..-+.++..|-
T Consensus 107 ~~~~~~s~~~~~~~~~f~i~ 126 (447)
T KOG2751|consen 107 SNTKTLSATINVLTRLFDIL 126 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHh
Confidence 33333344445555555543
No 274
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=70.81 E-value=1.4e+02 Score=31.27 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=11.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 506 ENYMLADKHKIEKEQNAQLRNQVAQLL 532 (1162)
Q Consensus 506 e~~~L~~k~k~~kEe~~qL~~ql~qll 532 (1162)
+...+....+.+++++.+|......+.
T Consensus 81 Ek~~L~k~lq~~q~kv~eLE~~~~~~~ 107 (140)
T PF10473_consen 81 EKENLDKELQKKQEKVSELESLNSSLE 107 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 333444444444444444444443333
No 275
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=70.68 E-value=9.5 Score=44.38 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=20.3
Q ss_pred HHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 179 QPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 179 ~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..++..++.+. ..|+-.|.||||||++|
T Consensus 138 ~~~L~~~v~~~-~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 138 REAIIAAVRAH-RNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 35566666654 45666699999999877
No 276
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=70.37 E-value=2.4 Score=49.38 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=21.2
Q ss_pred HHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
.+..++.-..+.|+-.|+||||||.||.
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 3444444445789999999999999994
No 277
>PRK10698 phage shock protein PspA; Provisional
Probab=70.34 E-value=1.8e+02 Score=32.36 Aligned_cols=111 Identities=12% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 001081 457 REKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKI-EKEQNAQLRNQVAQLLQLE 535 (1162)
Q Consensus 457 l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk~~k~~~elq~~Lk~e~~~L~~k~k~-~kEe~~qL~~ql~qllq~e 535 (1162)
++.-|+++++.+..++..+...-.....+..++..........+.....-...=++.+-. --.+......++..+....
T Consensus 29 l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~ 108 (222)
T PRK10698 29 VRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEV 108 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001081 536 QEQKMQIQQRDSTIKTLQAKINSIESQRNEAL 567 (1162)
Q Consensus 536 eE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~ 567 (1162)
+.....+.++...+..|+.+|.+++.+...+.
T Consensus 109 ~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~ 140 (222)
T PRK10698 109 TLVDETLARMKKEIGELENKLSETRARQQALM 140 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 278
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=70.11 E-value=3.2 Score=47.39 Aligned_cols=30 Identities=23% Similarity=0.222 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 179 QPFVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 179 ~PLV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
.++++++.--..+.|+..|.|||||+.||-
T Consensus 116 Pevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 116 PEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred cHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 577888877888899999999999999983
No 279
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=69.91 E-value=13 Score=41.78 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=34.6
Q ss_pred ecCCHHHHHHHHHHHHhhcCCCCcCCceeEEEEEEEEEEeeccCCceeeeeeeEEecCCCccc
Q 001081 281 KVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGL 343 (1162)
Q Consensus 281 ~V~S~~e~~~lL~~g~~nR~~~~t~SSRSH~IftI~V~~~n~~tg~~~~SKL~LVDLAGSER~ 343 (1162)
...+++++...+..+...- ......-|.-++.++|...+. -.|+||||+|-.+.
T Consensus 85 ~~~~~~~v~~~i~~~~~~~--~~~~~~~s~~~i~l~i~~p~~-------~~ltLIDlPGl~~~ 138 (240)
T smart00053 85 KFTDFDEVRNEIEAETDRV--TGTNKGISPVPINLRVYSPHV-------LNLTLIDLPGITKV 138 (240)
T ss_pred ccCCHHHHHHHHHHHHHHh--cCCCCcccCcceEEEEeCCCC-------CceEEEeCCCcccc
Confidence 3456778777777654321 111223566688888876653 36999999999643
No 280
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=69.88 E-value=2.3e+02 Score=34.75 Aligned_cols=97 Identities=14% Similarity=0.149 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001081 454 LYEREKEIQDLKQEILGLRQALKEA-----NDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQV 528 (1162)
Q Consensus 454 l~~l~~eI~eLk~Ei~~Lr~~L~~~-----~eq~~~l~~Elqk~~k~~~elq~~Lk~e~~~L~~k~k~~kEe~~qL~~ql 528 (1162)
-+.+-..+.+|++-++.||.....- ..+......++....+....|+.-+..+.-.|..-++.+-+..++-++.+
T Consensus 219 Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL 298 (426)
T smart00806 219 SDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFL 298 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777777664221 22334455566666667777888888888888888888888888877766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001081 529 AQLLQLEQEQKMQIQQRDSTIK 550 (1162)
Q Consensus 529 ~qllq~eeE~k~qiqq~e~eIe 550 (1162)
.-...+..++++.+....++..
T Consensus 299 ~lQedL~~DL~dDL~ka~eTf~ 320 (426)
T smart00806 299 TLQEDLIADLKEDLEKAEETFD 320 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6655555566665555555544
No 281
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=69.79 E-value=1.8e+02 Score=35.37 Aligned_cols=34 Identities=24% Similarity=0.190 Sum_probs=25.5
Q ss_pred ccccCchhhHHHhhhCC-----CCcccccchhhccchhh
Q 001081 695 IKTTPAGEYLTAALNDF-----NPEQYDNLAVISDGANK 728 (1162)
Q Consensus 695 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 728 (1162)
++-++.|.|+.||=||+ |-|+|.-.+-.+---.|
T Consensus 225 ~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdk 263 (459)
T KOG0288|consen 225 IDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDK 263 (459)
T ss_pred eeecCCCceEEeecCCCceeeeeccchhhhhhhcccccc
Confidence 77889999999999998 56676666655554555
No 282
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=69.71 E-value=1.6e+02 Score=31.46 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=7.7
Q ss_pred HHHhHHHHHhhh
Q 001081 418 LSSLNFSSRARS 429 (1162)
Q Consensus 418 LsTLrFAsRAr~ 429 (1162)
+.|+.|..+...
T Consensus 2 FDT~~~v~~Le~ 13 (177)
T PF07798_consen 2 FDTHKFVKRLEA 13 (177)
T ss_pred CcHHHHHHHHHH
Confidence 357777777654
No 283
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=69.68 E-value=1.9 Score=46.20 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=16.7
Q ss_pred ceeEeeeccCCCCCccccc
Q 001081 190 NVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 190 N~~IFAYGQTGSGKTyTM~ 208 (1162)
++.|+-.|+||||||.++.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4678999999999999984
No 284
>PF12846 AAA_10: AAA-like domain
Probab=69.56 E-value=1.8 Score=47.38 Aligned_cols=19 Identities=37% Similarity=0.501 Sum_probs=16.4
Q ss_pred ceeEeeeccCCCCCccccc
Q 001081 190 NVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 190 N~~IFAYGQTGSGKTyTM~ 208 (1162)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 5568899999999999983
No 285
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=69.47 E-value=1e+02 Score=38.37 Aligned_cols=61 Identities=20% Similarity=0.207 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHH
Q 001081 464 LKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQL 524 (1162)
Q Consensus 464 Lk~Ei~~Lr~~L~~~~eq~~~l~~Elqk~~k~~~elq~~Lk~e~~~L~~k~k~~kEe~~qL 524 (1162)
+..|...|...|..++.+...+..++.........+|.+|.....-.+.++..+-|++..+
T Consensus 439 f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasm 499 (518)
T PF10212_consen 439 FYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASM 499 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3344444444444433333333333333333333344444443333333333333333333
No 286
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=69.23 E-value=1.7 Score=44.43 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=18.7
Q ss_pred HHHhhHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 174 LFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 174 VFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.++.+..+++....|...+++-+|..|+|||+.+
T Consensus 8 e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 8 EIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp HHHHHHHTTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 3444455555334566788999999999999986
No 287
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=69.21 E-value=1.9e+02 Score=35.19 Aligned_cols=45 Identities=11% Similarity=0.181 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001081 516 IEKEQNAQLRNQVAQLLQLEQE-QKMQIQQRDSTIKTLQAKINSIE 560 (1162)
Q Consensus 516 ~~kEe~~qL~~ql~qllq~eeE-~k~qiqq~e~eIe~L~~eL~eLe 560 (1162)
..+.++..|++.+..+..+.+. ..+......+-++..+.+|..||
T Consensus 273 lHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 273 LHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344444555444444433322 33455566777888999998888
No 288
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=69.12 E-value=2 Score=40.23 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=15.7
Q ss_pred eeEeeeccCCCCCccccc
Q 001081 191 VSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 191 ~~IFAYGQTGSGKTyTM~ 208 (1162)
..++-+|++|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 468889999999999983
No 289
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=69.06 E-value=1.9 Score=46.57 Aligned_cols=16 Identities=44% Similarity=0.673 Sum_probs=13.7
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
-+..+|.||||||+|+
T Consensus 25 H~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 25 HIAIFGTTGSGKSNTV 40 (229)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3557799999999998
No 290
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=68.96 E-value=4.8e+02 Score=36.61 Aligned_cols=16 Identities=19% Similarity=0.497 Sum_probs=13.1
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
..+-.|++|||||.+|
T Consensus 26 ~~~~~G~NGsGKS~~l 41 (1353)
T TIGR02680 26 RLLLRGNNGAGKSKVL 41 (1353)
T ss_pred eEEEECCCCCcHHHHH
Confidence 3456699999999988
No 291
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=68.76 E-value=1.3e+02 Score=38.41 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=13.2
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
+++-+|+.|+|||..|
T Consensus 30 ~~~i~G~Ng~GKttll 45 (650)
T TIGR03185 30 IILIGGLNGAGKTTLL 45 (650)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999999876
No 292
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=68.71 E-value=44 Score=41.06 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001081 547 STIKTLQAKINSIESQRN 564 (1162)
Q Consensus 547 ~eIe~L~~eL~eLe~QL~ 564 (1162)
+++..++..+.+|..+|.
T Consensus 123 ~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 123 SERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333444455555555553
No 293
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=68.50 E-value=3.1e+02 Score=34.30 Aligned_cols=32 Identities=28% Similarity=0.497 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 450 ARKELYEREKEIQDLKQEILGLRQALKEANDQ 481 (1162)
Q Consensus 450 ~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq 481 (1162)
++.++.....++..|+..+..|+.+|......
T Consensus 293 ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~e 324 (522)
T PF05701_consen 293 AKKELEKAKEEASSLRASVESLRSELEKEKEE 324 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443333
No 294
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=68.49 E-value=2.2 Score=44.75 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=21.4
Q ss_pred hHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 178 VQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 178 V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
+..+.+.+-.|.+.+++-||+.|+|||+.|
T Consensus 8 l~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 8 LEKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 344444444567889999999999999987
No 295
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=68.44 E-value=3 Score=49.54 Aligned_cols=20 Identities=25% Similarity=0.150 Sum_probs=17.3
Q ss_pred CceeEeeeccCCCCCccccc
Q 001081 189 YNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 189 yN~~IFAYGQTGSGKTyTM~ 208 (1162)
.++.|+..|+||||||+||.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 46678889999999999983
No 296
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=67.74 E-value=3.3 Score=46.67 Aligned_cols=43 Identities=23% Similarity=0.316 Sum_probs=29.3
Q ss_pred eCCCCChHHHHHhhHHHHHHHhcC--CceeEeeeccCCCCCcccc
Q 001081 165 YGPHVGQAELFSDVQPFVQSALDG--YNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 165 F~~~asQeeVFe~V~PLV~svLdG--yN~~IFAYGQTGSGKTyTM 207 (1162)
|..-..|+++.+.+..++.....+ ....++-||+.|+|||+..
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLA 47 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 334456888887776666654432 2234677999999999877
No 297
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=67.46 E-value=3.1 Score=49.10 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.4
Q ss_pred CCceeEeeeccCCCCCccccc
Q 001081 188 GYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 188 GyN~~IFAYGQTGSGKTyTM~ 208 (1162)
-.++.|+..|+||||||.||.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHH
Confidence 356899999999999999984
No 298
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=67.46 E-value=1.2e+02 Score=31.22 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001081 538 QKMQIQQRDSTIKTLQAKINSIE 560 (1162)
Q Consensus 538 ~k~qiqq~e~eIe~L~~eL~eLe 560 (1162)
....+.........|+.+|.+++
T Consensus 101 i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 101 IGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444443
No 299
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=67.41 E-value=3.9 Score=44.89 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=17.6
Q ss_pred hcCCceeEeeeccCCCCCcccc
Q 001081 186 LDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 186 LdGyN~~IFAYGQTGSGKTyTM 207 (1162)
+......++-+|++|+|||+++
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHH
Confidence 4444567888999999999877
No 300
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=67.39 E-value=2.1e+02 Score=31.97 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=7.3
Q ss_pred cCCCCCCCCchhhhhhH
Q 001081 945 GLGGAVPPSTDALGQLL 961 (1162)
Q Consensus 945 ~~~~~~~~~~~~~~~~~ 961 (1162)
|++++.-...|.||-|+
T Consensus 276 ~~~~~~l~~~~~l~nl~ 292 (302)
T PF10186_consen 276 GIDVPLLDPRDTLGNLL 292 (302)
T ss_pred CCCCCcCCchhhHHHHH
Confidence 44444334444444443
No 301
>PRK12704 phosphodiesterase; Provisional
Probab=66.99 E-value=1.8e+02 Score=36.44 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=11.8
Q ss_pred CcccccccccCCCCCC
Q 001081 651 NVQPRDMARNDNNNKG 666 (1162)
Q Consensus 651 ~~q~~~~~~~~~~~~~ 666 (1162)
.|-.|=|||.+-|...
T Consensus 220 ~mkgriigreGrnir~ 235 (520)
T PRK12704 220 EMKGRIIGREGRNIRA 235 (520)
T ss_pred hhhcceeCCCcchHHH
Confidence 6777888888776654
No 302
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=66.63 E-value=2.1e+02 Score=37.64 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 57 SKQALSTKVQRLKDEIKFVKEDYLELRQEATDL 89 (1162)
Q Consensus 57 ~~~~~~~~l~~l~~~l~~~k~~~~~lrqe~~el 89 (1162)
.|.+....+..|...|..+.+++..|+-++.-+
T Consensus 128 ~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~ 160 (769)
T PF05911_consen 128 EKSQAEAEIEDLMARLESTEKENSSLKYELHVL 160 (769)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666667777777777777777666444
No 303
>PHA01754 hypothetical protein
Probab=66.44 E-value=9.3 Score=34.37 Aligned_cols=49 Identities=37% Similarity=0.521 Sum_probs=41.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhhccccccchhhhHHHHHhhhhhhhHHHHHHHHHhhccc
Q 001081 962 SEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVSKLRSALESVDHRRRKVLQQMRSDV 1019 (1162)
Q Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1019 (1162)
-|++-..|- -|.|.|-.|||||-|..-|-.-...|+|-| ||+..||.+-
T Consensus 12 tEltAKLyl----ALdDLamaLATee~EeVRkSevfqkA~EVi-----Kvvkemrr~~ 60 (69)
T PHA01754 12 TELTAKLYL----ALDDLTMALATEDKEEVRKSEVFQKALEVV-----KVVKEMRRLQ 60 (69)
T ss_pred HHHHHHHHH----HHHHHHHHHhhcchHHHHHHHHHHHHHHHH-----HHHHHHHHcc
Confidence 356666775 699999999999999999998899999988 8999999753
No 304
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=66.31 E-value=1.1e+02 Score=33.82 Aligned_cols=93 Identities=19% Similarity=0.250 Sum_probs=53.9
Q ss_pred hhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHhHHHHHHHH
Q 001081 439 TIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSD---LKSENYMLADKHK 515 (1162)
Q Consensus 439 ~ikk~k~i~~~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk~~k~~~elq~~---Lk~e~~~L~~k~k 515 (1162)
.|.-.+.-..++..++.....+|-.|+..+..++..+...+.+...+..............+.+ ..++...+..++.
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~ 90 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLG 90 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhh
Confidence 3444455566677777788888999999888888888776666655544333221111112222 2333444555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 001081 516 IEKEQNAQLRNQVAQL 531 (1162)
Q Consensus 516 ~~kEe~~qL~~ql~ql 531 (1162)
.+..++..++..+...
T Consensus 91 ~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 91 QLEAELAELREELACA 106 (202)
T ss_pred hhHHHHHHHHHHHHhh
Confidence 5555666666655554
No 305
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=66.09 E-value=1.9 Score=54.90 Aligned_cols=27 Identities=41% Similarity=0.471 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 599 AVSKKLEEELKKRDALIERLHEENEKL 625 (1162)
Q Consensus 599 ~lkkKLEEELkkrd~~ieqL~eEneKL 625 (1162)
....+++.++++..+.++.+..+.+.+
T Consensus 384 ~~~~~l~~e~~~L~ek~~~l~~eke~l 410 (713)
T PF05622_consen 384 RRADKLEFENKQLEEKLEALEEEKERL 410 (713)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555444554444444433
No 306
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=66.08 E-value=2.5e+02 Score=32.31 Aligned_cols=25 Identities=16% Similarity=0.428 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 457 REKEIQDLKQEILGLRQALKEANDQ 481 (1162)
Q Consensus 457 l~~eI~eLk~Ei~~Lr~~L~~~~eq 481 (1162)
.+..+..|+.++..|...+....++
T Consensus 79 ~e~~l~~Lq~ql~~l~akI~k~~~e 103 (258)
T PF15397_consen 79 EESKLSKLQQQLEQLDAKIQKTQEE 103 (258)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444443
No 307
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.69 E-value=1.8e+02 Score=36.12 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 001081 599 AVSKKLEEELKKRDALIERLHEENEKLFDRLTEKAS 634 (1162)
Q Consensus 599 ~lkkKLEEELkkrd~~ieqL~eEneKL~~~l~~k~~ 634 (1162)
.++-...+-.++...-|++|+.|.++-...+..+++
T Consensus 389 elk~~f~a~q~K~a~tikeL~~El~~yrr~i~~~~s 424 (613)
T KOG0992|consen 389 ELKVQFTAKQEKHAETIKELEIELEEYRRAILRNAS 424 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 344445555566777788888888888888888873
No 308
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=65.64 E-value=3.7 Score=46.26 Aligned_cols=29 Identities=31% Similarity=0.324 Sum_probs=22.6
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
..+..++..-.+.|+-.|.||||||.||.
T Consensus 70 ~~l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 70 EIFRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 34455666666788999999999999984
No 309
>PRK00106 hypothetical protein; Provisional
Probab=65.56 E-value=2.9e+02 Score=34.86 Aligned_cols=15 Identities=27% Similarity=0.321 Sum_probs=8.1
Q ss_pred HHHhhHHHHHhhCcc
Q 001081 1075 AMLTSLDELAERMPS 1089 (1162)
Q Consensus 1075 ~~~~~~~~~~~~~~~ 1089 (1162)
.|+.+|.+|++=..+
T Consensus 455 ~~i~rl~~lE~ia~~ 469 (535)
T PRK00106 455 NYIKRLRDLEEIANS 469 (535)
T ss_pred HHHHHHHHHHHHHhc
Confidence 456666666554433
No 310
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=65.31 E-value=73 Score=35.30 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001081 457 REKEIQDLKQEILGLRQALK 476 (1162)
Q Consensus 457 l~~eI~eLk~Ei~~Lr~~L~ 476 (1162)
++..+..|+.++..++.+++
T Consensus 141 Le~~~~~le~~l~~~k~~ie 160 (221)
T PF05700_consen 141 LEAMLKRLEKELAKLKKEIE 160 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 311
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=65.17 E-value=1.6e+02 Score=41.13 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=17.2
Q ss_pred CCCcccCCCC--ccccccccccCCCc
Q 001081 376 RKDIVPYENS--MLTKVLADSLGESS 399 (1162)
Q Consensus 376 k~~hVPYRdS--KLTrLLqDSLGGNS 399 (1162)
++..++|+-. +++.+|.++|..-+
T Consensus 193 r~P~Ls~~~~~~~l~~~l~~~l~~l~ 218 (1353)
T TIGR02680 193 RQPQLSKKPDEGVLSDALTEALPPLD 218 (1353)
T ss_pred cCCCCCCCCChHHHHHHHHHhCCCCC
Confidence 4455666655 59999999996644
No 312
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=64.97 E-value=3.8e+02 Score=35.30 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 001081 611 RDALIERLHEENEKLFDRLTEK 632 (1162)
Q Consensus 611 rd~~ieqL~eEneKL~~~l~~k 632 (1162)
++..+++|..|.+|+.|.+.+-
T Consensus 1090 ~ehelenLrnEieklndkIkdn 1111 (1424)
T KOG4572|consen 1090 KEHELENLRNEIEKLNDKIKDN 1111 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 5566788888888888887655
No 313
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=64.67 E-value=3.3e+02 Score=33.19 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001081 603 KLEEELKKRDALIERLHEENEKLFDRL 629 (1162)
Q Consensus 603 KLEEELkkrd~~ieqL~eEneKL~~~l 629 (1162)
...+++.....++..++....+..+++
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666665
No 314
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=64.65 E-value=1.5e+02 Score=37.09 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 457 REKEIQDLKQEILGLRQALKEANDQCVLL 485 (1162)
Q Consensus 457 l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l 485 (1162)
....|.+|-.++.....+......+|..+
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL 446 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECRAL 446 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666555555554544444455443
No 315
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=64.64 E-value=3.7e+02 Score=33.78 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=12.4
Q ss_pred EeeeccCCCCCcccc
Q 001081 193 IFAYGQTHSGKTHTM 207 (1162)
Q Consensus 193 IFAYGQTGSGKTyTM 207 (1162)
.+-+|.||||||-.|
T Consensus 25 ~vitG~nGaGKS~ll 39 (563)
T TIGR00634 25 TVLTGETGAGKSMII 39 (563)
T ss_pred EEEECCCCCCHHHHH
Confidence 356899999998766
No 316
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=64.61 E-value=2.5e+02 Score=36.38 Aligned_cols=35 Identities=14% Similarity=0.311 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 446 IANDARKELYEREKEIQDLKQEILGLRQALKEAND 480 (1162)
Q Consensus 446 i~~~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~e 480 (1162)
..+++..++.+.+.++..+++.+..|...|..+++
T Consensus 92 ~ndklE~~Lankda~lrq~eekn~slqerLelaE~ 126 (916)
T KOG0249|consen 92 LNDKLENELANKDADLRQNEEKNRSLQERLELAEP 126 (916)
T ss_pred chHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhH
Confidence 33444555555666666666666665555544443
No 317
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=64.55 E-value=2.4e+02 Score=33.08 Aligned_cols=83 Identities=14% Similarity=0.185 Sum_probs=45.1
Q ss_pred ccCCCcceEEEEEeCCCCCCHHH----HHHHhHHHHHhhhcccccCcchhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001081 394 SLGESSKTLMIVNICPNAANMSE----TLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEIL 469 (1162)
Q Consensus 394 SLGGNSkTvMIa~ISPs~~n~eE----TLsTLrFAsRAr~I~~~i~n~~~ikk~k~i~~~~~~el~~l~~eI~eLk~Ei~ 469 (1162)
.+||-.-.+|++- +--...|.. --..+.||..+-.|.-.... -.....+....++...+......|.+|+.++.
T Consensus 21 LvGGp~Gl~ml~A-gA~Y~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~-Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~ 98 (301)
T PF06120_consen 21 LVGGPPGLVMLGA-GAWYYFYQNAEQARQEAIEFADSLDELKEKLKE-MSSTQLRANIAKAEESIAAQKRAIEDLQKKID 98 (301)
T ss_pred hhcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777777653 111122222 34578888877665421111 01112344455556666667777777777777
Q ss_pred HHHHHHHHH
Q 001081 470 GLRQALKEA 478 (1162)
Q Consensus 470 ~Lr~~L~~~ 478 (1162)
.|+..+...
T Consensus 99 ~l~~~i~~y 107 (301)
T PF06120_consen 99 SLKDQIKNY 107 (301)
T ss_pred HHHHHHHHH
Confidence 777666543
No 318
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=64.42 E-value=3.1 Score=46.26 Aligned_cols=29 Identities=38% Similarity=0.573 Sum_probs=20.0
Q ss_pred hHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 178 VQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 178 V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
+..++..++.+ .+.|+..|.||||||.+|
T Consensus 116 ~~~~l~~~v~~-~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 116 IAEFLRSAVRG-RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp HHHHHHHCHHT-TEEEEEEESTTSSHHHHH
T ss_pred HHHHHhhcccc-ceEEEEECCCccccchHH
Confidence 34444444433 456777899999999998
No 319
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=64.32 E-value=2.9e+02 Score=32.44 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001081 600 VSKKLEEELKKRDALIERLHEEN 622 (1162)
Q Consensus 600 lkkKLEEELkkrd~~ieqL~eEn 622 (1162)
+.+||.++.+....+|..++...
T Consensus 220 RLkKl~~eke~L~~qv~klk~qL 242 (302)
T PF09738_consen 220 RLKKLADEKEELLEQVRKLKLQL 242 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667767666666666555443
No 320
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=64.12 E-value=95 Score=34.81 Aligned_cols=8 Identities=25% Similarity=0.165 Sum_probs=4.0
Q ss_pred ccccCchh
Q 001081 695 IKTTPAGE 702 (1162)
Q Consensus 695 ~~~~~~~~ 702 (1162)
+-.||-|.
T Consensus 195 ~~~t~Dg~ 202 (251)
T PF11932_consen 195 YYQTLDGS 202 (251)
T ss_pred eeECCCcc
Confidence 44455554
No 321
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=64.04 E-value=3.4e+02 Score=33.16 Aligned_cols=165 Identities=13% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHH-
Q 001081 455 YEREKEIQDLKQEILGLRQALKEANDQCVLLYNE-----------VQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNA- 522 (1162)
Q Consensus 455 ~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~E-----------lqk~~k~~~elq~~Lk~e~~~L~~k~k~~kEe~~- 522 (1162)
.....-+.-|..++..++.++.+++.+......+ .........+.....+.+....+.+....+....
T Consensus 157 ~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~ 236 (498)
T TIGR03007 157 QDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGG 236 (498)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccc
Q 001081 523 --------------QLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVL 588 (1162)
Q Consensus 523 --------------qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s~e~r~~~~~~~~~~~~s~~ 588 (1162)
.++.++.++..+..++........-.+..++.++..++.++.....................+.
T Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-- 314 (498)
T TIGR03007 237 EEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQ-- 314 (498)
T ss_pred CCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHH--
Q ss_pred ccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001081 589 RTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRL 629 (1162)
Q Consensus 589 k~~~~~~d~a~lkkKLEEELkkrd~~ieqL~eEneKL~~~l 629 (1162)
.......++.+++..+.++..+..+.+++.+++
T Consensus 315 --------l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 347 (498)
T TIGR03007 315 --------LQIELAEAEAEIASLEARVAELTARIERLESLL 347 (498)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 322
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=63.78 E-value=3.4e+02 Score=36.71 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 456 EREKEIQDLKQEILGLRQALKEAND 480 (1162)
Q Consensus 456 ~l~~eI~eLk~Ei~~Lr~~L~~~~e 480 (1162)
.+...|++|..|++.++..+....+
T Consensus 445 ~~~~~ieele~el~~~~~~l~~~~e 469 (1041)
T KOG0243|consen 445 EMAEQIEELEEELENLEKQLKDLTE 469 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555544433
No 323
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=63.73 E-value=21 Score=41.85 Aligned_cols=28 Identities=36% Similarity=0.460 Sum_probs=20.7
Q ss_pred HHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 179 QPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 179 ~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..++..++.+. ..|+-.|.||||||.+|
T Consensus 134 ~~~L~~~v~~~-~nilI~G~tGSGKTTll 161 (323)
T PRK13833 134 ASVIRSAIDSR-LNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 35555666543 35788999999999998
No 324
>PRK09343 prefoldin subunit beta; Provisional
Probab=62.86 E-value=1.8e+02 Score=29.49 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001081 536 QEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSS 570 (1162)
Q Consensus 536 eE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s~ 570 (1162)
+.....|...+.+.+.++..+.+++.++++.+...
T Consensus 81 E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 81 ELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34446777777788888888888888888776653
No 325
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=62.58 E-value=2.4e+02 Score=30.90 Aligned_cols=56 Identities=20% Similarity=0.218 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 509 MLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 564 (1162)
Q Consensus 509 ~L~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~ 564 (1162)
.+...+..++.++.+++.+...+....+....+|...+...+.+++++...+.+..
T Consensus 128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555566666677777777777777777776654
No 326
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=62.48 E-value=4e+02 Score=33.45 Aligned_cols=118 Identities=15% Similarity=0.181 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 455 YEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVS-FTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQ 533 (1162)
Q Consensus 455 ~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk~~k~~-~elq~~Lk~e~~~L~~k~k~~kEe~~qL~~ql~qllq 533 (1162)
..+...+.+|...+..|...+.-.+..+.....++...|... ......+..+.......++..+++.+.+-.++..+..
T Consensus 354 ~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~ 433 (531)
T PF15450_consen 354 AELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSD 433 (531)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344555566666666665555433333333333333332211 1112223333333333333334444444444444332
Q ss_pred HHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 001081 534 LEQEQK--------MQIQQRDSTIKTLQAKINSIESQRNEALHSSEV 572 (1162)
Q Consensus 534 ~eeE~k--------~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s~e~ 572 (1162)
+..-++ .+-..+..+|..+++++..+-.++.-.....+.
T Consensus 434 Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLssvQ~~~e~~~~ 480 (531)
T PF15450_consen 434 KCDLHKSDSDTKIDTEGKAREREVGAVRQELATLLSSVQLLKEDNPG 480 (531)
T ss_pred HHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 222222 222445566777777776666555544444444
No 327
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=62.37 E-value=4.3 Score=43.54 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=20.6
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..|..++...+..++..|..||||||+|
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 3455566555555666899999999998
No 328
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=62.03 E-value=70 Score=35.84 Aligned_cols=43 Identities=30% Similarity=0.390 Sum_probs=25.0
Q ss_pred CcccccchhhccchhhHHHHHHHHHHHhccchhH--HHHHHHhhh
Q 001081 713 PEQYDNLAVISDGANKLLMLVLAAVIKAGASREH--EILAEIRDA 755 (1162)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 755 (1162)
|+..++.--|-+|--|..-.+|..|-=|-.|||. |-|.=|+-|
T Consensus 227 p~die~~~~~~~~~e~e~~i~lg~~~iaapsREdave~l~iik~a 271 (290)
T COG4026 227 PKDIEGQGYIYAEDEKEVEILLGTVYIAAPSREDAVEELEIIKEA 271 (290)
T ss_pred chhccceeeeecccccccceeeeeeeeecCchHHHHHHHHHHHHH
Confidence 4445555555566666655666666666667776 555545444
No 329
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=61.98 E-value=5e+02 Score=34.34 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 601 SKKLEEELKKRDALIERLHEENEKLF 626 (1162)
Q Consensus 601 kkKLEEELkkrd~~ieqL~eEneKL~ 626 (1162)
.+-|.+.|++++..++-..--+.+..
T Consensus 274 nk~Lke~l~~k~~ELq~sr~~~a~ta 299 (769)
T PF05911_consen 274 NKMLKEALAKKNSELQFSRNMYAKTA 299 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666654444444333
No 330
>PRK01156 chromosome segregation protein; Provisional
Probab=61.74 E-value=5e+02 Score=34.32 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=11.1
Q ss_pred CccccccCchhHHHHHHHHHHHHHH
Q 001081 1087 MPSLLDIDHPCAQRQIADARRMVEV 1111 (1162)
Q Consensus 1087 ~~~~~~~~~~~~~~~~~~~~~~~~~ 1111 (1162)
-|.+|-+|-|.+.=--.....++.+
T Consensus 825 ~~~~lilDEpt~~lD~~~~~~l~~~ 849 (895)
T PRK01156 825 DKSLLIMDEPTAFLDEDRRTNLKDI 849 (895)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHH
Confidence 3555555555544333333333333
No 331
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=61.71 E-value=4e+02 Score=33.11 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=8.9
Q ss_pred HHHHHHHhHHHHHhhh
Q 001081 414 MSETLSSLNFSSRARS 429 (1162)
Q Consensus 414 ~eETLsTLrFAsRAr~ 429 (1162)
+.|+|..|+-.++-..
T Consensus 315 LNEvL~kLk~tn~kQq 330 (527)
T PF15066_consen 315 LNEVLQKLKHTNRKQQ 330 (527)
T ss_pred HHHHHHHHHhhhHHHH
Confidence 4466666666555443
No 332
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=61.69 E-value=1.7e+02 Score=28.89 Aligned_cols=32 Identities=13% Similarity=0.337 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001081 536 QEQKMQIQQRDSTIKTLQAKINSIESQRNEAL 567 (1162)
Q Consensus 536 eE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~ 567 (1162)
+.+...+...+..+..++.++.+++.++++.+
T Consensus 77 e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 77 ETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33355566666667777777777777776544
No 333
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=61.48 E-value=3.9e+02 Score=32.89 Aligned_cols=29 Identities=34% Similarity=0.354 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001081 604 LEEELKKRDALIERLHEENEKLFDRLTEK 632 (1162)
Q Consensus 604 LEEELkkrd~~ieqL~eEneKL~~~l~~k 632 (1162)
.+++.....+.|+.+.++.+.+..+...-
T Consensus 365 fq~ekeatqELieelrkelehlr~~kl~~ 393 (502)
T KOG0982|consen 365 FQEEKEATQELIEELRKELEHLRRRKLVL 393 (502)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566666777777777777666664433
No 334
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=61.24 E-value=4.1e+02 Score=33.59 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=13.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 506 ENYMLADKHKIEKEQNAQLRNQVAQLL 532 (1162)
Q Consensus 506 e~~~L~~k~k~~kEe~~qL~~ql~qll 532 (1162)
....+...+...++.+..|..+++.+.
T Consensus 310 ~~~~l~~~l~k~ke~n~~L~~Eie~V~ 336 (570)
T COG4477 310 NLPILPDYLEKAKENNEHLKEEIERVK 336 (570)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555544443
No 335
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=61.20 E-value=2.7e+02 Score=30.95 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 457 REKEIQDLKQEILGLRQALKEANDQC 482 (1162)
Q Consensus 457 l~~eI~eLk~Ei~~Lr~~L~~~~eq~ 482 (1162)
+...|..|+.++.+-+..+..+..+.
T Consensus 9 lnrri~~leeele~aqErl~~a~~KL 34 (205)
T KOG1003|consen 9 LNRRIQLLEEELDRAQERLATALQKL 34 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444444444433
No 336
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=61.00 E-value=3.6e+02 Score=32.37 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=12.2
Q ss_pred HHHhHhhHHHHHHHHhhcC
Q 001081 357 LHVMKSLSALGDVLSSLTS 375 (1162)
Q Consensus 357 ~~INkSLsaLg~VIsALs~ 375 (1162)
..|=+|=..+..|+..|.-
T Consensus 73 ~~il~S~~v~~~Vi~~l~l 91 (444)
T TIGR03017 73 VDIINSDRVAKKVVDKLKL 91 (444)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 3455666677777777653
No 337
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=60.98 E-value=4.9 Score=42.68 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=15.8
Q ss_pred eeEeeeccCCCCCcccccc
Q 001081 191 VSIFAYGQTHSGKTHTMEG 209 (1162)
Q Consensus 191 ~~IFAYGQTGSGKTyTM~G 209 (1162)
-.++-||++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 4589999999999999854
No 338
>PRK11281 hypothetical protein; Provisional
Probab=60.60 E-value=3.3e+02 Score=37.42 Aligned_cols=20 Identities=10% Similarity=0.247 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001081 605 EEELKKRDALIERLHEENEK 624 (1162)
Q Consensus 605 EEELkkrd~~ieqL~eEneK 624 (1162)
..++.+.+++++.|.+....
T Consensus 233 ~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 233 TARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555554443
No 339
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=60.27 E-value=3.2e+02 Score=33.12 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=28.9
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 442 KWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQ 490 (1162)
Q Consensus 442 k~k~i~~~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elq 490 (1162)
+...+...++..+.....|-.+|+.+...++..+....+.+....+|.+
T Consensus 282 Kveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAq 330 (442)
T PF06637_consen 282 KVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQ 330 (442)
T ss_pred HHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666667777777666666666655554444444433
No 340
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=59.98 E-value=5.8 Score=45.63 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 179 QPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 179 ~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..++..++.+ ...|+-.|.||||||.+|
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 3455556654 356788999999999998
No 341
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=59.51 E-value=80 Score=29.10 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 510 LADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 560 (1162)
Q Consensus 510 L~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe 560 (1162)
|-.....++.+|..|+.++.........+..++....+.++.+..++..|+
T Consensus 12 Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 12 LLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 334444555666666666666665555555566666666666666666655
No 342
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=59.16 E-value=3.8e+02 Score=35.13 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=13.4
Q ss_pred CceeEeeeccCCCCCcccccc
Q 001081 189 YNVSIFAYGQTHSGKTHTMEG 209 (1162)
Q Consensus 189 yN~~IFAYGQTGSGKTyTM~G 209 (1162)
.-.+-...|..|||=.|.|.+
T Consensus 281 VP~ISVViGeggSGGAlA~g~ 301 (762)
T PLN03229 281 VPIVSIVIGEGGSGGALAIGC 301 (762)
T ss_pred CCEEEEEeCCcchHHHHHhhc
Confidence 344455668888887776654
No 343
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=59.12 E-value=1.8e+02 Score=31.59 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001081 458 EKEIQDLKQEILGLRQALKEA 478 (1162)
Q Consensus 458 ~~eI~eLk~Ei~~Lr~~L~~~ 478 (1162)
...|..|+..+..++......
T Consensus 15 a~Lv~~LQ~KV~qYr~rc~el 35 (182)
T PF15035_consen 15 AQLVQRLQAKVLQYRKRCAEL 35 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555544444444333
No 344
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=59.04 E-value=1.2e+02 Score=28.22 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001081 463 DLKQEILGLRQALKEAN 479 (1162)
Q Consensus 463 eLk~Ei~~Lr~~L~~~~ 479 (1162)
.|+.++..|+..+..+.
T Consensus 2 ~Lea~~~~Lr~rLd~~~ 18 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLT 18 (69)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34555555555554443
No 345
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=58.48 E-value=4.7 Score=41.23 Aligned_cols=43 Identities=19% Similarity=0.151 Sum_probs=26.8
Q ss_pred HHHhhHHHHHHHhcC----CceeEeeeccCCCCCccccccCCCCCChHHHHHHHHHH
Q 001081 174 LFSDVQPFVQSALDG----YNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFD 226 (1162)
Q Consensus 174 VFe~V~PLV~svLdG----yN~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~ 226 (1162)
+-+.|-..|.+.+.. ..-.+--.|.||+||||+- ..+.+.||.
T Consensus 33 a~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~----------~liA~~ly~ 79 (127)
T PF06309_consen 33 AVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVS----------RLIAEHLYK 79 (127)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHH----------HHHHHHHHh
Confidence 333344444444433 3334556799999999974 566777886
No 346
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=58.44 E-value=3.9 Score=39.32 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=14.3
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
+|+-.|.+|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5889999999999875
No 347
>PF13479 AAA_24: AAA domain
Probab=58.39 E-value=4.6 Score=43.82 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=17.1
Q ss_pred ceeEeeeccCCCCCcccccc
Q 001081 190 NVSIFAYGQTHSGKTHTMEG 209 (1162)
Q Consensus 190 N~~IFAYGQTGSGKTyTM~G 209 (1162)
+..++.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 56789999999999998754
No 348
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=58.23 E-value=2.6e+02 Score=29.88 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=14.1
Q ss_pred HhhhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001081 500 QSDLKSENYMLADKHKIEKEQNAQLRNQV 528 (1162)
Q Consensus 500 q~~Lk~e~~~L~~k~k~~kEe~~qL~~ql 528 (1162)
+..+..+...|..++..+++++.+|..++
T Consensus 84 Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~ 112 (158)
T PF09744_consen 84 EDQWRQERKDLQSQVEQLEEENRQLELKL 112 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444455555555555555554333
No 349
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=58.03 E-value=3.5e+02 Score=31.32 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=17.0
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 501 SDLKSENYMLADKHKIEKEQNAQLRNQVAQLL 532 (1162)
Q Consensus 501 ~~Lk~e~~~L~~k~k~~kEe~~qL~~ql~qll 532 (1162)
.++......|..+++..+.+++..++++..+.
T Consensus 186 ~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 186 NNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555544
No 350
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=57.94 E-value=2.7e+02 Score=29.89 Aligned_cols=25 Identities=36% Similarity=0.591 Sum_probs=11.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Q 001081 445 DIANDARKELYEREKEIQDLKQEIL 469 (1162)
Q Consensus 445 ~i~~~~~~el~~l~~eI~eLk~Ei~ 469 (1162)
.+...++.+...+..++.+++.++.
T Consensus 20 ~I~E~~R~E~~~l~~EL~evk~~v~ 44 (159)
T PF05384_consen 20 EIAEQARQEYERLRKELEEVKEEVS 44 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555455555555444443
No 351
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=57.73 E-value=3.8 Score=44.24 Aligned_cols=16 Identities=44% Similarity=0.457 Sum_probs=14.7
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
.|+-.|+||+|||.|+
T Consensus 3 vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCchHhHH
Confidence 5788999999999998
No 352
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=57.59 E-value=2e+02 Score=28.46 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001081 541 QIQQRDSTIKTLQAKINSI 559 (1162)
Q Consensus 541 qiqq~e~eIe~L~~eL~eL 559 (1162)
++......+..++..+...
T Consensus 89 ~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 89 ELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444333
No 353
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=57.49 E-value=3.1e+02 Score=30.55 Aligned_cols=11 Identities=18% Similarity=0.265 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 001081 611 RDALIERLHEE 621 (1162)
Q Consensus 611 rd~~ieqL~eE 621 (1162)
.+..++|-.+|
T Consensus 180 Le~~LeQK~kE 190 (207)
T PF05010_consen 180 LEESLEQKTKE 190 (207)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 354
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=56.73 E-value=1.3e+02 Score=28.62 Aligned_cols=83 Identities=23% Similarity=0.277 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHHHH
Q 001081 537 EQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIE 616 (1162)
Q Consensus 537 E~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s~e~r~~~~~~~~~~~~s~~k~~~~~~d~a~lkkKLEEELkkrd~~ie 616 (1162)
.+..++......+..+...+++.+.-+.+.....+.+...+.--...+. .+.......|++..+..+..|+
T Consensus 9 ~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~---------~~~~~~~~~L~~~~~~~~~~i~ 79 (106)
T PF01920_consen 9 ELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVK---------QDKEEAIEELEERIEKLEKEIK 79 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEE---------EEHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHH---------hhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555544444332222111111111 2344555555555555555555
Q ss_pred HHHHHHHHHHHh
Q 001081 617 RLHEENEKLFDR 628 (1162)
Q Consensus 617 qL~eEneKL~~~ 628 (1162)
.+......+-.+
T Consensus 80 ~l~~~~~~l~~~ 91 (106)
T PF01920_consen 80 KLEKQLKYLEKK 91 (106)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 544444444333
No 355
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=56.69 E-value=9.9 Score=43.23 Aligned_cols=18 Identities=39% Similarity=0.351 Sum_probs=14.8
Q ss_pred eeEeeeccCCCCCccccc
Q 001081 191 VSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 191 ~~IFAYGQTGSGKTyTM~ 208 (1162)
..|.-.|+||+|||+|+.
T Consensus 195 ~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLA 212 (282)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 356667999999999984
No 356
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=56.59 E-value=7.4 Score=45.77 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=27.2
Q ss_pred CCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 168 HVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 168 ~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
+..|..+|+.|-..+.. .....+|.-|.-|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~---~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN---EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc---cCCcEEEEEcCCCCChhHHH
Confidence 34689999987333332 34456788999999999987
No 357
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=56.52 E-value=10 Score=45.43 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=16.4
Q ss_pred ceeEeeeccCCCCCcccc
Q 001081 190 NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 190 N~~IFAYGQTGSGKTyTM 207 (1162)
...|+.+|+||+|||.|+
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 468889999999999998
No 358
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=56.45 E-value=3e+02 Score=30.01 Aligned_cols=151 Identities=16% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHHHhhhHHHhHHHHHHHHH-HHHHHHHH
Q 001081 451 RKELYEREKEIQDLKQEILGLRQALKEANDQCVL-LYNEVQKA----WKVSFTLQSDLKSENYMLADKHKI-EKEQNAQL 524 (1162)
Q Consensus 451 ~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~-l~~Elqk~----~k~~~elq~~Lk~e~~~L~~k~k~-~kEe~~qL 524 (1162)
+.++..+.+.++..-.+...=...+-...+.... .+.|+-++ +..--.+-..+..+..++-..+.. .+..+..-
T Consensus 32 R~dVi~L~e~Ld~~L~~~~ar~~gIcpvr~~ly~~~F~ELIRQVTi~C~ERGlLL~rvrde~~~~l~~y~~l~~s~~~f~ 111 (189)
T PF10211_consen 32 RQDVIQLQEWLDKMLQQRQARETGICPVREELYSQCFDELIRQVTIDCPERGLLLLRVRDEYRMTLDAYQTLYESSIAFG 111 (189)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHhCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcccccccccCCCCCChhHHHHHH
Q 001081 525 RNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKL 604 (1162)
Q Consensus 525 ~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s~e~r~~~~~~~~~~~~s~~k~~~~~~d~a~lkkKL 604 (1162)
..+..+..+...++..++..++.+++.|+.++.+++.+.......... ..
T Consensus 112 ~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e------------------------------~~ 161 (189)
T PF10211_consen 112 MRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEE------------------------------LR 161 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------HH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001081 605 EEELKKRDALIERLHEENEKLFDRLTE 631 (1162)
Q Consensus 605 EEELkkrd~~ieqL~eEneKL~~~l~~ 631 (1162)
..+.++...++.-++..|..|.+.+..
T Consensus 162 ~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 162 QEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
No 359
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=56.39 E-value=2.5e+02 Score=36.85 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=23.4
Q ss_pred hhccCC-hhhhHHHHHHHHhhcccccccccCC-CCCC
Q 001081 892 LFVHTP-AGELQRQIRSWLAENFEFLSVTGDD-ASGG 926 (1162)
Q Consensus 892 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 926 (1162)
..||-- .|-|++.|+.||..+=...+..-+. .-||
T Consensus 726 ~IIHGkGtG~Lr~~v~~~L~~~~~V~~f~~a~~~~GG 762 (771)
T TIGR01069 726 LIIHGKGSGKLRKGVQELLKNHPKVKSFRDAPPNDGG 762 (771)
T ss_pred EEEcCCChhHHHHHHHHHhcCCcceeeecccCcccCC
Confidence 355632 3889999999999876666664333 3344
No 360
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=56.14 E-value=7.6 Score=41.05 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=21.0
Q ss_pred hHHHHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 178 VQPFVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 178 V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
+.+++..++.. ...+.-.|+||||||.+|.
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 34555555553 3457778999999999873
No 361
>PRK12705 hypothetical protein; Provisional
Probab=56.04 E-value=5.1e+02 Score=32.61 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=12.1
Q ss_pred CCcccccccccCCCCCC
Q 001081 650 VNVQPRDMARNDNNNKG 666 (1162)
Q Consensus 650 ~~~q~~~~~~~~~~~~~ 666 (1162)
-.|-.|=|||.+-|...
T Consensus 207 demkGriIGreGrNir~ 223 (508)
T PRK12705 207 DAMKGRIIGREGRNIRA 223 (508)
T ss_pred hHhhccccCccchhHHH
Confidence 36777888888776554
No 362
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=55.94 E-value=15 Score=43.47 Aligned_cols=29 Identities=31% Similarity=0.401 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 179 QPFVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 179 ~PLV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
..++..++.++ +.|+-.|.||||||.++.
T Consensus 163 a~~L~~av~~r-~NILisGGTGSGKTTlLN 191 (355)
T COG4962 163 AKFLRRAVGIR-CNILISGGTGSGKTTLLN 191 (355)
T ss_pred HHHHHHHHhhc-eeEEEeCCCCCCHHHHHH
Confidence 45666666666 779999999999998873
No 363
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=55.80 E-value=1.1e+02 Score=39.97 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=10.5
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
.+.-.|+.|+|||..|
T Consensus 324 ~liItGpNg~GKSTlL 339 (771)
T TIGR01069 324 VLAITGPNTGGKTVTL 339 (771)
T ss_pred EEEEECCCCCCchHHH
Confidence 4555677777777665
No 364
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=55.77 E-value=3.3 Score=52.86 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001081 597 SSAVSKKLEEELKKRDALIERLHEENEKLFDRL 629 (1162)
Q Consensus 597 ~a~lkkKLEEELkkrd~~ieqL~eEneKL~~~l 629 (1162)
+...++||+ ++.-.+.+++.|++.|..+.++.
T Consensus 317 ve~YKkKLe-d~~~lk~qvk~Lee~N~~l~e~~ 348 (713)
T PF05622_consen 317 VEKYKKKLE-DLEDLKRQVKELEEDNAVLLETK 348 (713)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554 45666667777777776666553
No 365
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=55.13 E-value=4 Score=50.08 Aligned_cols=49 Identities=24% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 001081 455 YEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSE 506 (1162)
Q Consensus 455 ~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk~~k~~~elq~~Lk~e 506 (1162)
+.++.||..|++.+.....+|++.+.++..-++..+ ++..+.+.+|+.-
T Consensus 372 e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~---Kll~qyq~RLedS 420 (495)
T PF12004_consen 372 EKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQ---KLLLQYQARLEDS 420 (495)
T ss_dssp ----------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHhhhhh
Confidence 345667777776666666666666555443332222 3334444444443
No 366
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=55.08 E-value=7 Score=44.29 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=17.2
Q ss_pred cCC-ceeEeeeccCCCCCccccc
Q 001081 187 DGY-NVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 187 dGy-N~~IFAYGQTGSGKTyTM~ 208 (1162)
.|. ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 454 4567779999999999873
No 367
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=54.99 E-value=7.4 Score=45.51 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=21.5
Q ss_pred hHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 178 VQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 178 V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
+..++..++.+. ..|+..|.||||||.+|
T Consensus 149 ~~~~L~~~v~~~-~nili~G~tgSGKTTll 177 (332)
T PRK13900 149 IKEFLEHAVISK-KNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHHHcC-CcEEEECCCCCCHHHHH
Confidence 456666666543 34778899999999998
No 368
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=54.83 E-value=6.7e+02 Score=33.57 Aligned_cols=28 Identities=36% Similarity=0.445 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001081 605 EEELKKRDALIERLHEENEKLFDRLTEK 632 (1162)
Q Consensus 605 EEELkkrd~~ieqL~eEneKL~~~l~~k 632 (1162)
|+|+...+..++.+.++.+.+..++...
T Consensus 773 e~E~~~lEe~~d~~~ee~~el~a~v~~~ 800 (984)
T COG4717 773 EEELALLEEAIDALDEEVEELHAQVAAL 800 (984)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777777777776443
No 369
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=54.83 E-value=1.4e+02 Score=38.57 Aligned_cols=8 Identities=13% Similarity=0.443 Sum_probs=4.0
Q ss_pred HHHHHHhc
Q 001081 180 PFVQSALD 187 (1162)
Q Consensus 180 PLV~svLd 187 (1162)
.++..|++
T Consensus 85 ~v~~~VV~ 92 (754)
T TIGR01005 85 EILKQVVD 92 (754)
T ss_pred HHHHHHHH
Confidence 45555554
No 370
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=54.68 E-value=6.4 Score=41.27 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=17.0
Q ss_pred HHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
.|..++..-. ..+..|+.|||||+|+.
T Consensus 9 Ai~~~~~~~~-~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 9 AIQSALSSNG-ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp HHHHHCTSSE--EEEE-STTSSHHHHHH
T ss_pred HHHHHHcCCC-CEEEECCCCCChHHHHH
Confidence 3444443333 56678999999999883
No 371
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=54.54 E-value=39 Score=43.49 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 001081 611 RDALIERLHEENEKLFDRLTEK 632 (1162)
Q Consensus 611 rd~~ieqL~eEneKL~~~l~~k 632 (1162)
+.+.++.|+.||+.|..++..-
T Consensus 564 k~~~l~~L~~En~~L~~~l~~l 585 (722)
T PF05557_consen 564 KKSTLEALQAENEDLLARLRSL 585 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4567888999999999998433
No 372
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=54.51 E-value=4.7 Score=38.74 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=13.4
Q ss_pred EeeeccCCCCCcccc
Q 001081 193 IFAYGQTHSGKTHTM 207 (1162)
Q Consensus 193 IFAYGQTGSGKTyTM 207 (1162)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999986
No 373
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.49 E-value=6.3e+02 Score=33.20 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=18.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 595 MDSSAVSKKLEEELKKRDALIERLHEENEKLFD 627 (1162)
Q Consensus 595 ~d~a~lkkKLEEELkkrd~~ieqL~eEneKL~~ 627 (1162)
+.+..+...|..|.+..+++ |+.+|..|.+
T Consensus 856 ~~v~q~~~~L~~er~~IeER---Ie~IN~SL~~ 885 (1104)
T COG4913 856 DGVTQLLSHLDHERALIEER---IEAINDSLRR 885 (1104)
T ss_pred chHHHHHHHHHHHHHHHHHH---HHHHHHHHhh
Confidence 56667777777665555544 4466765544
No 374
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=53.97 E-value=1.6e+02 Score=31.01 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 456 EREKEIQDLKQEILGLRQALKEAND 480 (1162)
Q Consensus 456 ~l~~eI~eLk~Ei~~Lr~~L~~~~e 480 (1162)
.++.+|.+|+.++..|+.....+..
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~ 100 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEA 100 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555444433
No 375
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=53.83 E-value=3.8e+02 Score=33.68 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=12.9
Q ss_pred hhccchhhHHHHHHHHHHH
Q 001081 721 VISDGANKLLMLVLAAVIK 739 (1162)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~ 739 (1162)
..|.|-=+.+||.++.|..
T Consensus 440 ~lSgGe~~rv~la~~l~~~ 458 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLS 458 (563)
T ss_pred hcCHhHHHHHHHHHHHhhC
Confidence 4567777777777766653
No 376
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=53.81 E-value=14 Score=41.52 Aligned_cols=43 Identities=21% Similarity=0.300 Sum_probs=30.2
Q ss_pred eCCCCChHHHHHhhHHHHHHHhcC--CceeEeeeccCCCCCcccc
Q 001081 165 YGPHVGQAELFSDVQPFVQSALDG--YNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 165 F~~~asQeeVFe~V~PLV~svLdG--yN~~IFAYGQTGSGKTyTM 207 (1162)
|++-..|+.+-.....+++.+... .=..++-||+.|.|||..-
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHH
Confidence 445567999999888888888643 2345888999999998653
No 377
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=53.70 E-value=1.2e+02 Score=39.79 Aligned_cols=11 Identities=18% Similarity=0.507 Sum_probs=6.3
Q ss_pred HhHHhhhcCcc
Q 001081 781 YIRSLLARSPE 791 (1162)
Q Consensus 781 ~~~~~~~~~~~ 791 (1162)
.||..|.++|.
T Consensus 750 ~v~~~L~~~~~ 760 (782)
T PRK00409 750 GVQEFLKKHPS 760 (782)
T ss_pred HHHHHHcCCCc
Confidence 45566666654
No 378
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=53.53 E-value=6.3e+02 Score=32.90 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=13.7
Q ss_pred CCCcceEEEEEeCCCCCCHHHHHHH
Q 001081 396 GESSKTLMIVNICPNAANMSETLSS 420 (1162)
Q Consensus 396 GGNSkTvMIa~ISPs~~n~eETLsT 420 (1162)
++++.++-|-.-++++.-....+++
T Consensus 224 ~~~s~ii~Is~~~~dP~~Aa~ilN~ 248 (726)
T PRK09841 224 SKESGMLELTMTGDDPQLITRILNS 248 (726)
T ss_pred CCCCCeEEEEEeCCCHHHHHHHHHH
Confidence 3456666666666665544444443
No 379
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=53.11 E-value=6.2e+02 Score=32.66 Aligned_cols=17 Identities=29% Similarity=0.673 Sum_probs=10.0
Q ss_pred CCCCCCHHHHHHHhHHH
Q 001081 408 CPNAANMSETLSSLNFS 424 (1162)
Q Consensus 408 SPs~~n~eETLsTLrFA 424 (1162)
.|....|.|-+.-|...
T Consensus 103 ~~~~~~yQerLaRLe~d 119 (861)
T KOG1899|consen 103 CPEYPEYQERLARLEMD 119 (861)
T ss_pred CCcchHHHHHHHHHhcc
Confidence 35556677766665543
No 380
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=53.08 E-value=9.6 Score=38.21 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=17.1
Q ss_pred HHHhcCCceeEeeeccCCCCCccccc
Q 001081 183 QSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 183 ~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
..+.++. ..++..|.||||||.++.
T Consensus 18 ~~~~~~~-~~~~i~~~~GsGKT~~~~ 42 (201)
T smart00487 18 EALLSGL-RDVILAAPTGSGKTLAAL 42 (201)
T ss_pred HHHHcCC-CcEEEECCCCCchhHHHH
Confidence 3444442 345677899999999884
No 381
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=52.98 E-value=2.2e+02 Score=36.36 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=8.0
Q ss_pred ccchhhhhhhhcc
Q 001081 845 KSKLSSVVLRMRG 857 (1162)
Q Consensus 845 ~~~~~~~~~~~~~ 857 (1162)
++-+-.++.|||-
T Consensus 489 ~rglrnifgKlrR 501 (861)
T KOG1899|consen 489 RRGLRNIFGKLRR 501 (861)
T ss_pred hhHHHHHHHHhhh
Confidence 3446667777763
No 382
>PF14992 TMCO5: TMCO5 family
Probab=52.93 E-value=1.7e+02 Score=33.97 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=25.4
Q ss_pred HhhhHHHHhHhcCcccchhh--hhhhhhhhHHhHHhhhc
Q 001081 752 IRDAVFAFIRKMEPTRVMDT--MLVSRVRILYIRSLLAR 788 (1162)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 788 (1162)
.-+-+|-||.-.-|.-+.|+ ++.||-++--.|.+|.=
T Consensus 231 LL~y~~f~~~fInpdll~~~LP~~L~R~tlw~LR~~l~P 269 (280)
T PF14992_consen 231 LLGYLLFYIQFINPDLLEDVLPKMLSRRTLWRLREFLFP 269 (280)
T ss_pred HHHHHHHHHhhcCcHHHHHHhHHhcchhHHHHHHHHHhh
Confidence 34566777888888777775 35677777777777653
No 383
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=52.76 E-value=8.4 Score=45.35 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=21.5
Q ss_pred hHHHHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 178 VQPFVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 178 V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
+..++..++.+ ...|+..|.||||||.+|.
T Consensus 151 ~~~~l~~~v~~-~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 151 LEAFLHACVVG-RLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHHHHc-CCeEEEECCCCccHHHHHH
Confidence 44556666542 3447888999999999984
No 384
>PRK13342 recombination factor protein RarA; Reviewed
Probab=52.63 E-value=8 Score=46.15 Aligned_cols=38 Identities=26% Similarity=0.382 Sum_probs=24.7
Q ss_pred ChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 170 GQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 170 sQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.|+.+...-.++..-+-.+.-..++-||++|+|||++.
T Consensus 16 Gq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 16 GQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred CcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHH
Confidence 46666554333333334555556777999999999877
No 385
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=52.38 E-value=5.9e+02 Score=32.22 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhccccchhhhhHhHHH-hhHHHHHhhC
Q 001081 1050 DGILNQVKDAVRQSSVNTLSRSKKKAML-TSLDELAERM 1087 (1162)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 1087 (1162)
.+-+.++.+-+.+.|.+.-.-++..... ..++.|.+..
T Consensus 450 ~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t 488 (560)
T PF06160_consen 450 SDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKT 488 (560)
T ss_pred HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666665555544322 2344444433
No 386
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=52.32 E-value=8.9 Score=44.17 Aligned_cols=41 Identities=24% Similarity=0.430 Sum_probs=27.6
Q ss_pred CCChHHHHHhhHHHHHHHhc-C-CceeEeeeccCCCCCccccc
Q 001081 168 HVGQAELFSDVQPFVQSALD-G-YNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 168 ~asQeeVFe~V~PLV~svLd-G-yN~~IFAYGQTGSGKTyTM~ 208 (1162)
-..|+++-+.+..++..... | ....++-||++|+|||+...
T Consensus 27 ~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 27 FIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred hcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 34566666666666655432 2 22357789999999999883
No 387
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=52.23 E-value=4.6e+02 Score=31.97 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001081 60 ALSTKVQRLKDEIKFVK 76 (1162)
Q Consensus 60 ~~~~~l~~l~~~l~~~k 76 (1162)
.+..||..+++.|+..+
T Consensus 8 ~l~~Ki~~~~eqi~~e~ 24 (395)
T PF10267_consen 8 HLQQKILKLKEQIKVEQ 24 (395)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35566666666666544
No 388
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=52.09 E-value=3.1e+02 Score=28.86 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 539 KMQIQQRDSTIKTLQAKINSIESQRNE 565 (1162)
Q Consensus 539 k~qiqq~e~eIe~L~~eL~eLe~QL~e 565 (1162)
...|+.+...++....++..||..+..
T Consensus 103 ~~~I~~Lq~~~~~~~~ki~~Le~~i~~ 129 (146)
T PF08702_consen 103 PSNIRVLQNILRSNRQKIQRLEQDIDQ 129 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666665544
No 389
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=51.79 E-value=36 Score=40.07 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=23.0
Q ss_pred hHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 178 VQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 178 V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
+..++..++.+. +.|+-.|.||||||.+|
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHH
Confidence 456677777654 68889999999999877
No 390
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=51.29 E-value=13 Score=47.39 Aligned_cols=90 Identities=20% Similarity=0.285 Sum_probs=51.0
Q ss_pred eeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCccccccCC---CCCChH----HHHHHHHHHhhccc
Q 001081 159 FEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSS---HDRGLY----ARCFEELFDLSNSD 231 (1162)
Q Consensus 159 F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~Gs~---~d~GII----PRaledLF~~i~~~ 231 (1162)
|....=|.|.-.|..-|+. +++.+-+|...- ..+|.|||||||||-.-- ..|-|+ .....+|++.+..-
T Consensus 2 f~~~~~~~~~~~Q~~ai~~---l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f 77 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK---LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEF 77 (655)
T ss_pred ceeccCCCCChHHHHHHHH---HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHh
Confidence 4445557788888876664 455555664222 378999999999996521 112111 11223333332211
Q ss_pred cccccccceeEEEEEEecchhc
Q 001081 232 TTATARFNFAVTVFELYNEQLR 253 (1162)
Q Consensus 232 ~~~~~~f~V~VS~lEIYNE~V~ 253 (1162)
- +...+.+.||||.-|.-..|
T Consensus 78 ~-p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 78 F-PENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred C-CCCeEEEEeeecccCCcccc
Confidence 1 22346678899888865543
No 391
>COG4209 LplB ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]
Probab=51.13 E-value=5.3 Score=45.65 Aligned_cols=25 Identities=32% Similarity=0.597 Sum_probs=22.2
Q ss_pred HHHhhhCCCCcccccchhhccchhhHH
Q 001081 704 LTAALNDFNPEQYDNLAVISDGANKLL 730 (1162)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1162)
-.||+.--||.+|| ||+-|||||.=
T Consensus 189 ylAai~~Idpt~YE--AA~vDGA~rwq 213 (309)
T COG4209 189 YLAAIAGIDPTLYE--AAMVDGASRWQ 213 (309)
T ss_pred HHHHHHcCCHHHHH--HHHcccHHHHH
Confidence 35899999999999 89999999963
No 392
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=51.12 E-value=5.1e+02 Score=35.99 Aligned_cols=20 Identities=55% Similarity=0.755 Sum_probs=17.3
Q ss_pred hcchhhhhhhhccCChhhhHHHHHHHHhhcc
Q 001081 883 ATGNKALAALFVHTPAGELQRQIRSWLAENF 913 (1162)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 913 (1162)
.-|-|.||+|- ||--|||+|
T Consensus 1185 SAGQKvLAsli-----------IRLALAEtf 1204 (1294)
T KOG0962|consen 1185 SAGQKVLASLI-----------IRLALAETF 1204 (1294)
T ss_pred cchHHHHHHHH-----------HHHHHHHHH
Confidence 45888999986 899999999
No 393
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=51.05 E-value=1.9e+02 Score=29.11 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001081 546 DSTIKTLQAKINSIESQR 563 (1162)
Q Consensus 546 e~eIe~L~~eL~eLe~QL 563 (1162)
...+..|+.+|.++...+
T Consensus 57 ~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 57 NQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444333
No 394
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.70 E-value=5e+02 Score=32.19 Aligned_cols=8 Identities=0% Similarity=-0.035 Sum_probs=4.0
Q ss_pred CCCCcccc
Q 001081 200 HSGKTHTM 207 (1162)
Q Consensus 200 GSGKTyTM 207 (1162)
++|-||.+
T Consensus 49 q~~~s~ll 56 (521)
T KOG1937|consen 49 QTISSYLL 56 (521)
T ss_pred cccccccC
Confidence 44555554
No 395
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=50.34 E-value=1.8e+02 Score=36.04 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 454 LYEREKEIQDLKQEILGLRQALKEANDQC 482 (1162)
Q Consensus 454 l~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~ 482 (1162)
+..++++|++|+.++..++.++...+.+.
T Consensus 73 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 73 LAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666665555544443
No 396
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=50.30 E-value=9.1e+02 Score=33.79 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 541 QIQQRDSTIKTLQAKINSIESQRNE 565 (1162)
Q Consensus 541 qiqq~e~eIe~L~~eL~eLe~QL~e 565 (1162)
.+++++..+..++.++..+-+.+.+
T Consensus 879 ~~~qle~~~~~l~e~~~~~~s~~~e 903 (1294)
T KOG0962|consen 879 RLQQLEEDIEELSEEITRLDSKVKE 903 (1294)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555444443
No 397
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=50.14 E-value=12 Score=43.58 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=18.8
Q ss_pred HHHHHhcCCc-eeEeeeccCCCCCcccc
Q 001081 181 FVQSALDGYN-VSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 181 LV~svLdGyN-~~IFAYGQTGSGKTyTM 207 (1162)
++.+.+.+.+ --.+-||+.|+|||.|.
T Consensus 47 ~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 47 VLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred HHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 3344444433 34778999999999997
No 398
>PTZ00424 helicase 45; Provisional
Probab=50.11 E-value=9.1 Score=44.66 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=20.7
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..+++|.|.. ..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~i--i~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDTI--GQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCEE--EECCCCChHHHHH
Confidence 5567778999864 5689999999865
No 399
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=50.09 E-value=11 Score=39.57 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=18.8
Q ss_pred HHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.++.++.|+| ++..++||+|||.+.
T Consensus 29 ~~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 29 AIPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 3455566877 577889999999873
No 400
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=50.03 E-value=1.2e+02 Score=34.56 Aligned_cols=32 Identities=34% Similarity=0.539 Sum_probs=23.4
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhccc
Q 001081 601 SKKLEEELKK-------RDALIERLHEENEKLFDRLTEK 632 (1162)
Q Consensus 601 kkKLEEELkk-------rd~~ieqL~eEneKL~~~l~~k 632 (1162)
...||+|+.+ ...+++.++.+|.||++++-.-
T Consensus 95 n~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 95 NAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666655 5566678999999999998555
No 401
>PRK04195 replication factor C large subunit; Provisional
Probab=49.92 E-value=13 Score=45.32 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=27.5
Q ss_pred hHHHHHhhHHHHHHHhcCC-ceeEeeeccCCCCCcccc
Q 001081 171 QAELFSDVQPFVQSALDGY-NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 171 QeeVFe~V~PLV~svLdGy-N~~IFAYGQTGSGKTyTM 207 (1162)
|.++-+.+..++.....|. .-.++-||++|+|||++.
T Consensus 19 ~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 19 NEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 4555555666677666665 457888999999999887
No 402
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=49.64 E-value=7.1 Score=43.17 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=21.3
Q ss_pred CceeEeeeccCCCCCccccccCCCCCChHHHHHHHHHH
Q 001081 189 YNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFD 226 (1162)
Q Consensus 189 yN~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~ 226 (1162)
.++.++..|..|||||+|| +.|++.-|..
T Consensus 12 ~~~~~lV~a~AGSGKT~~l---------~~ri~~ll~~ 40 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTL---------LERIAYLLYE 40 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHH---------HHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCchHHH---------HHHHHHhhcc
Confidence 6777888899999999998 5666666654
No 403
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=49.52 E-value=2.7e+02 Score=33.40 Aligned_cols=11 Identities=45% Similarity=0.480 Sum_probs=5.3
Q ss_pred hhHHHHHHHHH
Q 001081 727 NKLLMLVLAAV 737 (1162)
Q Consensus 727 ~~~~~~~~~~~ 737 (1162)
|+.+.++++.|
T Consensus 395 ~~~~~l~~~~~ 405 (444)
T TIGR03017 395 RLLLNLVLSIF 405 (444)
T ss_pred chHHHHHHHHH
Confidence 45554444444
No 404
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=49.46 E-value=57 Score=40.18 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 519 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 563 (1162)
Q Consensus 519 Ee~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL 563 (1162)
.+..+++++++.+.+..+.+..+.+..+++|+.++.+++.|+.|+
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344455555555544444444556666777888888888888777
No 405
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=49.12 E-value=2.6e+02 Score=27.19 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 457 REKEIQDLKQEILGLRQALKEANDQCVLLYNEV 489 (1162)
Q Consensus 457 l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~El 489 (1162)
+.....++...+..+..++...++....+..|.
T Consensus 8 ~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek 40 (96)
T PF08647_consen 8 MEQAFKELSEQADKKVKELTILEQKKLRLEAEK 40 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333333333
No 406
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=49.02 E-value=3.6e+02 Score=34.76 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccC
Q 001081 607 ELKKRDALIERLHEENEKLFDRLTEKA 633 (1162)
Q Consensus 607 ELkkrd~~ieqL~eEneKL~~~l~~k~ 633 (1162)
++...+..+.+...+-.|.|+.+..+.
T Consensus 360 e~ea~E~rkkr~~aei~Kffqk~~~k~ 386 (811)
T KOG4364|consen 360 EVEAQELRKKRHEAEIGKFFQKIDNKF 386 (811)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccc
Confidence 445555666677788889998876663
No 407
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=48.91 E-value=11 Score=45.47 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=20.1
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..+++|.| ++..++||||||.+.
T Consensus 33 ~ai~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 33 QSLPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 34556678988 677789999999764
No 408
>PRK11519 tyrosine kinase; Provisional
Probab=48.90 E-value=7.3e+02 Score=32.29 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=14.8
Q ss_pred CcceEEEEEeCCCCCCHHHHHHHh
Q 001081 398 SSKTLMIVNICPNAANMSETLSSL 421 (1162)
Q Consensus 398 NSkTvMIa~ISPs~~n~eETLsTL 421 (1162)
++.++-|-.-++++.-....++++
T Consensus 226 ~S~ii~Is~~~~dP~~Aa~iaN~l 249 (719)
T PRK11519 226 DTGVLSLTYTGEDREQIRDILNSI 249 (719)
T ss_pred CceEEEEEEEcCCHHHHHHHHHHH
Confidence 456666666677666555555555
No 409
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=48.79 E-value=7.3e+02 Score=32.28 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 001081 611 RDALIERLHEENEKLFDRLTEK 632 (1162)
Q Consensus 611 rd~~ieqL~eEneKL~~~l~~k 632 (1162)
+.+.|++...|.+.+++.++.-
T Consensus 310 mKeli~k~r~Eleel~~~~h~s 331 (660)
T KOG4302|consen 310 MKELIEKKRSELEELWRLLHYS 331 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4556666777777777776554
No 410
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.74 E-value=2.4e+02 Score=26.58 Aligned_cols=49 Identities=14% Similarity=0.149 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 511 ADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSI 559 (1162)
Q Consensus 511 ~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eL 559 (1162)
+..++.+||++..+.+......+..+.+..+..+.+++-..-+++|+.|
T Consensus 24 QmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 24 QMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555444443333333333333344444444444433
No 411
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=48.63 E-value=3.9e+02 Score=29.10 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001081 456 EREKEIQDLKQEILGLRQAL 475 (1162)
Q Consensus 456 ~l~~eI~eLk~Ei~~Lr~~L 475 (1162)
.+...+.+++..+..|...+
T Consensus 20 ~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 20 RLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 412
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=48.51 E-value=89 Score=28.65 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 518 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 566 (1162)
Q Consensus 518 kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~ 566 (1162)
.+.+.+|+.++.......+++...+.+...+|..|+..++.|..+++..
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666666666666666666777777777777777666553
No 413
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=48.36 E-value=5.9e+02 Score=31.03 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001081 546 DSTIKTLQAKINSIESQRN 564 (1162)
Q Consensus 546 e~eIe~L~~eL~eLe~QL~ 564 (1162)
.+..+..+.+|-.||.+..
T Consensus 352 qEalEscqtrisKlEl~qq 370 (455)
T KOG3850|consen 352 QEALESCQTRISKLELQQQ 370 (455)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445556666666665544
No 414
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=48.29 E-value=6.3 Score=41.94 Aligned_cols=16 Identities=31% Similarity=0.497 Sum_probs=12.9
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
-++.+|+||||||.++
T Consensus 40 h~li~G~tgsGKS~~l 55 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLL 55 (205)
T ss_dssp SEEEE--TTSSHHHHH
T ss_pred eEEEEcCCCCCccHHH
Confidence 5899999999999998
No 415
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=48.09 E-value=11 Score=48.40 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHhhhhhhhhhhhhhhccccc
Q 001081 958 GQLLSEYAKRVYNSQLQHLKDIAGTLATED 987 (1162)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 987 (1162)
-+|++||-+-+|+.-.+.++|.=-|+--||
T Consensus 1139 ~~l~ee~~~~~~~~~~~~~~~lw~~~~~~e 1168 (1172)
T KOG0926|consen 1139 NVLLEEYQNWFWKVFRHRVKDLWPPMLKEE 1168 (1172)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCccccc
Confidence 379999999999999999999887776655
No 416
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=47.86 E-value=4e+02 Score=32.99 Aligned_cols=29 Identities=31% Similarity=0.308 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001081 601 SKKLEEELKKRDALIERLHEENEKLFDRL 629 (1162)
Q Consensus 601 kkKLEEELkkrd~~ieqL~eEneKL~~~l 629 (1162)
+..|-+-|.++...++++-+++.++--+|
T Consensus 433 ~~qLt~tl~qkq~~le~v~~~~~~ln~~l 461 (554)
T KOG4677|consen 433 KNQLTYTLKQKQIGLERVVEILHKLNAPL 461 (554)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 44667777778888888888887776555
No 417
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=47.75 E-value=7.5 Score=38.33 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=14.0
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
.|+.+|.+|||||+..
T Consensus 1 lii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 3789999999999875
No 418
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=47.70 E-value=6.6e+02 Score=31.41 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 001081 606 EELKKRDALIERLHEE 621 (1162)
Q Consensus 606 EELkkrd~~ieqL~eE 621 (1162)
+-|-++...++.+-.|
T Consensus 399 ~~Li~KQ~~lE~l~~e 414 (511)
T PF09787_consen 399 ESLIQKQTQLESLGSE 414 (511)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3333444444443333
No 419
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=47.68 E-value=11 Score=47.86 Aligned_cols=35 Identities=34% Similarity=0.386 Sum_probs=26.5
Q ss_pred HHHHhhHHHHHHHh-cCCceeEeeeccCCCCCcccc
Q 001081 173 ELFSDVQPFVQSAL-DGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 173 eVFe~V~PLV~svL-dGyN~~IFAYGQTGSGKTyTM 207 (1162)
.||.........++ .|.|-||+..|.+|||||.|+
T Consensus 67 Hif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 67 HIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred ccchhhhcccccccccccccceeeccccccccccch
Confidence 36655444444443 689999999999999999996
No 420
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=47.57 E-value=8.4e+02 Score=32.61 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=23.1
Q ss_pred CceeEeeeccCCCCCccc-------cccCCCCCChHHHHHHHHHH
Q 001081 189 YNVSIFAYGQTHSGKTHT-------MEGSSHDRGLYARCFEELFD 226 (1162)
Q Consensus 189 yN~~IFAYGQTGSGKTyT-------M~Gs~~d~GIIPRaledLF~ 226 (1162)
.++..+-+|+||||||.. +||...-.| +....++..
T Consensus 24 ~~gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~--~~~~~~~i~ 66 (908)
T COG0419 24 DSGIFLIVGPNGAGKSSILDAITFALYGKTPRLG--AFSLDDLIR 66 (908)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHcCCCCCcc--chhhhHHHh
Confidence 345567889999999865 477655444 444444443
No 421
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=47.45 E-value=14 Score=47.19 Aligned_cols=31 Identities=29% Similarity=0.142 Sum_probs=21.3
Q ss_pred hHHHHHHHhc-----CCceeEeeeccCCCCCcccccc
Q 001081 178 VQPFVQSALD-----GYNVSIFAYGQTHSGKTHTMEG 209 (1162)
Q Consensus 178 V~PLV~svLd-----GyN~~IFAYGQTGSGKTyTM~G 209 (1162)
|..+++.+.. |.+..++.. .||||||+||..
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~ 282 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHH
Confidence 5666677665 344455444 899999999953
No 422
>PRK06547 hypothetical protein; Provisional
Probab=47.32 E-value=14 Score=39.17 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=20.0
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.++..+..+.--.|.-+|.+|||||+.-
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 3445555555556777799999999865
No 423
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=47.17 E-value=8.5e+02 Score=32.56 Aligned_cols=18 Identities=33% Similarity=0.398 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 001081 611 RDALIERLHEENEKLFDR 628 (1162)
Q Consensus 611 rd~~ieqL~eEneKL~~~ 628 (1162)
....++++++...++-..
T Consensus 422 ~~~~l~~~~~~~~~~~~~ 439 (908)
T COG0419 422 LERELEELEEEIKKLEEQ 439 (908)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334344444333333
No 424
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=47.04 E-value=5.4e+02 Score=30.27 Aligned_cols=12 Identities=8% Similarity=0.418 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 001081 549 IKTLQAKINSIE 560 (1162)
Q Consensus 549 Ie~L~~eL~eLe 560 (1162)
+..|+++...|.
T Consensus 344 vsKLk~et~~mn 355 (384)
T KOG0972|consen 344 VSKLKEETQTMN 355 (384)
T ss_pred HHHHHHHHHhhh
Confidence 334444444443
No 425
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=46.97 E-value=17 Score=40.44 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=14.8
Q ss_pred eeEeeeccCCCCCcccc
Q 001081 191 VSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 191 ~~IFAYGQTGSGKTyTM 207 (1162)
..++-||++|+|||++.
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 45778999999999987
No 426
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=46.78 E-value=4.5e+02 Score=29.22 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 540 MQIQQRDSTIKTLQAKINSIESQRNE 565 (1162)
Q Consensus 540 ~qiqq~e~eIe~L~~eL~eLe~QL~e 565 (1162)
.+..+.+..+..|+.+|.+++.+..+
T Consensus 189 ~kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 189 SKNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555544443
No 427
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=46.64 E-value=13 Score=40.93 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=19.5
Q ss_pred CceeEeeeccCCCCCccccccCCCCCChHHHHHHHHHH
Q 001081 189 YNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFD 226 (1162)
Q Consensus 189 yN~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~ 226 (1162)
.+-.+++.|+.||||||.- +..+++.+.+
T Consensus 18 ~~~~v~~~G~AGTGKT~LA---------~a~Al~~v~~ 46 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA---------LAAALELVKE 46 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH---------HHHHHHHHHT
T ss_pred hCCeEEEECCCCCcHHHHH---------HHHHHHHHHh
Confidence 5568999999999999876 4555665553
No 428
>PRK10865 protein disaggregation chaperone; Provisional
Probab=46.55 E-value=17 Score=47.77 Aligned_cols=45 Identities=29% Similarity=0.297 Sum_probs=29.9
Q ss_pred eeeceeeCCCCChHHHHHhhHHHHHHHhcCCc------eeEeeeccCCCCCcccc
Q 001081 159 FEFDRVYGPHVGQAELFSDVQPFVQSALDGYN------VSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 159 F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN------~~IFAYGQTGSGKTyTM 207 (1162)
.-+.+|++ |...-+.|...|..+..|.+ ++++-+|+||+|||++.
T Consensus 565 ~l~~~viG----Q~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 565 ELHHRVIG----QNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred HhCCeEeC----CHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 34566776 55555555555555544432 57888899999999976
No 429
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=46.42 E-value=4e+02 Score=28.53 Aligned_cols=14 Identities=21% Similarity=0.311 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 001081 460 EIQDLKQEILGLRQ 473 (1162)
Q Consensus 460 eI~eLk~Ei~~Lr~ 473 (1162)
++..|+.++..|..
T Consensus 51 e~~~L~~d~e~L~~ 64 (158)
T PF09744_consen 51 ELELLREDNEQLET 64 (158)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 430
>PLN03025 replication factor C subunit; Provisional
Probab=46.34 E-value=12 Score=42.98 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=21.9
Q ss_pred hHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 171 QAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 171 QeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
|.++.+.+..++. .|.-..++-||+.|+|||++..
T Consensus 18 ~~~~~~~L~~~~~---~~~~~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 18 NEDAVSRLQVIAR---DGNMPNLILSGPPGTGKTTSIL 52 (319)
T ss_pred cHHHHHHHHHHHh---cCCCceEEEECCCCCCHHHHHH
Confidence 5555544443332 3333335669999999999984
No 431
>PRK10869 recombination and repair protein; Provisional
Probab=46.30 E-value=7.2e+02 Score=31.45 Aligned_cols=14 Identities=29% Similarity=0.480 Sum_probs=11.3
Q ss_pred eeeccCCCCCcccc
Q 001081 194 FAYGQTHSGKTHTM 207 (1162)
Q Consensus 194 FAYGQTGSGKTyTM 207 (1162)
.-.|.||||||-.|
T Consensus 26 vitGetGaGKS~il 39 (553)
T PRK10869 26 VITGETGAGKSIAI 39 (553)
T ss_pred EEECCCCCChHHHH
Confidence 46799999998655
No 432
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=46.24 E-value=13 Score=46.15 Aligned_cols=31 Identities=23% Similarity=0.467 Sum_probs=24.9
Q ss_pred hhHHHHHHHhcCCc--eeEeeeccCCCCCcccc
Q 001081 177 DVQPFVQSALDGYN--VSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 177 ~V~PLV~svLdGyN--~~IFAYGQTGSGKTyTM 207 (1162)
+|+..++..+.|.. ..++-+|++|+|||.|+
T Consensus 30 eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 30 EVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 46777887776653 46888999999999998
No 433
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=45.72 E-value=12 Score=44.44 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=20.9
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..+++|.| +++.++||||||.+.
T Consensus 30 ~ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 30 EAIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 44566778987 788899999999874
No 434
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=45.71 E-value=7.7e+02 Score=31.63 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=14.4
Q ss_pred hhccCChhhhHHHHHHHHhhc
Q 001081 892 LFVHTPAGELQRQIRSWLAEN 912 (1162)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~~~ 912 (1162)
+++-||-|-|-..=|.=|.++
T Consensus 578 ~iiD~p~~~lD~~~r~~l~~~ 598 (650)
T TIGR03185 578 VIIDTPLGRLDSSHRENLVVN 598 (650)
T ss_pred EEEcCCccccChHHHHHHHHH
Confidence 567888888876666666554
No 435
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=45.52 E-value=60 Score=37.39 Aligned_cols=30 Identities=30% Similarity=0.445 Sum_probs=22.6
Q ss_pred hHHHHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 178 VQPFVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 178 V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
+.+++..++.+. ..|.-.|.||||||..|.
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHHH
Confidence 567777777554 456777999999999763
No 436
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=45.36 E-value=52 Score=42.22 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=27.1
Q ss_pred HHHHhhHHHHHHHh-cCCceeEeeeccCCCCCcccc
Q 001081 173 ELFSDVQPFVQSAL-DGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 173 eVFe~V~PLV~svL-dGyN~~IFAYGQTGSGKTyTM 207 (1162)
.||........+++ .|.|-||+.-|.+|||||.+.
T Consensus 68 HifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 68 HVFAIADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 36665444445554 589999999999999999997
No 437
>PRK13764 ATPase; Provisional
Probab=45.29 E-value=11 Score=47.52 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=19.4
Q ss_pred HHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
+++.+. .....|+..|+||||||+++.
T Consensus 249 l~~~l~-~~~~~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 249 LKERLE-ERAEGILIAGAPGAGKSTFAQ 275 (602)
T ss_pred HHHHHH-hcCCEEEEECCCCCCHHHHHH
Confidence 334333 334458999999999999983
No 438
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=45.10 E-value=2.6e+02 Score=27.61 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001081 537 EQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 569 (1162)
Q Consensus 537 E~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s 569 (1162)
.+..+++.....+..++..+++.+.-+.+...-
T Consensus 14 ~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l 46 (110)
T TIGR02338 14 QLQQQLQAVATQKQQVEAQLKEAEKALEELERL 46 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333444444555555555555555555444333
No 439
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=44.95 E-value=4.1e+02 Score=32.72 Aligned_cols=18 Identities=44% Similarity=0.567 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001081 458 EKEIQDLKQEILGLRQAL 475 (1162)
Q Consensus 458 ~~eI~eLk~Ei~~Lr~~L 475 (1162)
..+++.|+.++..||+-.
T Consensus 150 ~~Ev~~LRreLavLRQl~ 167 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLY 167 (424)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566666666665543
No 440
>PF13514 AAA_27: AAA domain
Probab=44.91 E-value=1e+03 Score=32.72 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001081 598 SAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 632 (1162)
Q Consensus 598 a~lkkKLEEELkkrd~~ieqL~eEneKL~~~l~~k 632 (1162)
......++..++.....+++...+.+.+..++..-
T Consensus 352 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l 386 (1111)
T PF13514_consen 352 LQEREQLEQALAQARRELEEAERELEQLQAELAAL 386 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34455666666667777777777777777776443
No 441
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=44.70 E-value=2.9e+02 Score=26.51 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 509 MLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSI 559 (1162)
Q Consensus 509 ~L~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eL 559 (1162)
.|+..++.+|+++..+......+..-.+++..+.++.+++-..-+.+++.|
T Consensus 22 LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 22 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666655555544444444444444445545555555444
No 442
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=44.64 E-value=70 Score=37.23 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=28.2
Q ss_pred eeeeceeeCCCCChHHHHH--hhH-----HHHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 158 DFEFDRVYGPHVGQAELFS--DVQ-----PFVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 158 ~F~FDkVF~~~asQeeVFe--~V~-----PLV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
.|+.-+.-....+-.++.. .+. -+...+-.|. +|+-.|.||||||++|.
T Consensus 106 s~~IRk~~~~~~t~~~l~~~gt~~~~~~ayL~~~ie~~~--siii~G~t~sGKTt~ln 161 (312)
T COG0630 106 SFTIRKFSDEPITPEDLIEYGTISPEQAAYLWLAIEARK--SIIICGGTASGKTTLLN 161 (312)
T ss_pred cEEEEcCCCCCCCHHHHhhcCCCCHHHHHHHHHHHHcCC--cEEEECCCCCCHHHHHH
Confidence 4555444444445455443 222 2233333444 57889999999999983
No 443
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=44.50 E-value=9.8 Score=40.61 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=15.3
Q ss_pred CCceeEeeeccCCCCCcccc
Q 001081 188 GYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 188 GyN~~IFAYGQTGSGKTyTM 207 (1162)
..-..||..||.|||||+.+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHH
Confidence 34568999999999999877
No 444
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=44.49 E-value=1.8e+02 Score=30.38 Aligned_cols=74 Identities=22% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcccccccccCCCCcccccccccCCCCCC
Q 001081 520 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKI---NSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMD 596 (1162)
Q Consensus 520 e~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL---~eLe~QL~e~~~s~e~r~~~~~~~~~~~~s~~k~~~~~~d 596 (1162)
++..++..++........++..+..++..|..+.... +.-..+|+........
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~------------------------ 75 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARA------------------------ 75 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 597 SSAVSKKLEEELKKRDALIERLHEENEKLFD 627 (1162)
Q Consensus 597 ~a~lkkKLEEELkkrd~~ieqL~eEneKL~~ 627 (1162)
.+..++..|++|..||+.+.+
T Consensus 76 ----------~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 76 ----------LLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred ----------HHHHHHHHHHHHHHcCHHHHH
No 445
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=44.35 E-value=6.2e+02 Score=30.13 Aligned_cols=44 Identities=23% Similarity=0.227 Sum_probs=28.4
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 001081 590 TTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEKAS 634 (1162)
Q Consensus 590 ~~~~~~d~a~lkkKLEEELkkrd~~ieqL~eEneKL~~~l~~k~~ 634 (1162)
+.+...-+..+-. |-.|=+-..++|.++.+|.+-+.+.+.....
T Consensus 181 L~g~~~rivDIDa-Li~ENRyL~erl~q~qeE~~l~k~~i~KYK~ 224 (319)
T PF09789_consen 181 LNGDENRIVDIDA-LIMENRYLKERLKQLQEEKELLKQTINKYKS 224 (319)
T ss_pred hCCCCCCcccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3343333333433 3445566777999999999999999866533
No 446
>PRK09183 transposase/IS protein; Provisional
Probab=44.30 E-value=12 Score=42.06 Aligned_cols=21 Identities=33% Similarity=0.378 Sum_probs=16.5
Q ss_pred cCCceeEeeeccCCCCCcccccc
Q 001081 187 DGYNVSIFAYGQTHSGKTHTMEG 209 (1162)
Q Consensus 187 dGyN~~IFAYGQTGSGKTyTM~G 209 (1162)
.|.| |+-+|++|+||||.+.+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHHH
Confidence 4555 55799999999999843
No 447
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=44.21 E-value=7.9 Score=37.46 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=13.6
Q ss_pred EeeeccCCCCCcccc
Q 001081 193 IFAYGQTHSGKTHTM 207 (1162)
Q Consensus 193 IFAYGQTGSGKTyTM 207 (1162)
|+-||++|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 578999999999987
No 448
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=43.96 E-value=13 Score=44.14 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=19.9
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..++.|.|+ ++.++||||||.+.
T Consensus 37 ~aip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 37 LALPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHHhCCCcE--EEECCCCchHHHHH
Confidence 455667899885 55669999999864
No 449
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=43.91 E-value=4.5e+02 Score=28.65 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=0.0
Q ss_pred cchhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHH
Q 001081 436 NRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHK 515 (1162)
Q Consensus 436 n~~~ikk~k~i~~~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk~~k~~~elq~~Lk~e~~~L~~k~k 515 (1162)
+.......+.....+..++......|.+|+.++..++...... ++...+..+++...+...+++.++..-...--..++
T Consensus 60 ps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~ 138 (188)
T PF03962_consen 60 PSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPEKIE 138 (188)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 516 IEKEQNAQLRNQVAQLLQLEQEQKMQIQQR 545 (1162)
Q Consensus 516 ~~kEe~~qL~~ql~qllq~eeE~k~qiqq~ 545 (1162)
.+++...........-..-..-++.-+..+
T Consensus 139 ~~~~~~~~~~~~anrwTDNI~~l~~~~~~k 168 (188)
T PF03962_consen 139 KLKEEIKIAKEAANRWTDNIFSLKSYLKKK 168 (188)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
No 450
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=43.72 E-value=13 Score=41.70 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=21.6
Q ss_pred hHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 171 QAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 171 QeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
|.++-+.+...+. .|....++-||+.|+|||+++
T Consensus 22 ~~~~~~~l~~~i~---~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 22 QEEIVERLKSYVK---EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred cHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHH
Confidence 4444444433332 344445788999999999887
No 451
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=43.66 E-value=7.8e+02 Score=31.11 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=10.8
Q ss_pred HHHhHhhHHHHHHHHhh
Q 001081 357 LHVMKSLSALGDVLSSL 373 (1162)
Q Consensus 357 ~~INkSLsaLg~VIsAL 373 (1162)
..+++++++|.+++.+-
T Consensus 196 ~~lqk~f~alEk~mka~ 212 (531)
T PF15450_consen 196 SFLQKSFLALEKRMKAQ 212 (531)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34666666666666655
No 452
>PRK09343 prefoldin subunit beta; Provisional
Probab=43.48 E-value=3.2e+02 Score=27.68 Aligned_cols=31 Identities=13% Similarity=0.184 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 536 QEQKMQIQQRDSTIKTLQAKINSIESQRNEA 566 (1162)
Q Consensus 536 eE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~ 566 (1162)
+.+..+++.....+..++..+++.+.-+.+.
T Consensus 17 q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL 47 (121)
T PRK09343 17 QQLQQQLERLLQQKSQIDLELREINKALEEL 47 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555555555555544443
No 453
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=43.48 E-value=3.9e+02 Score=27.64 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 536 QEQKMQIQQRDSTIKTLQAKINSIESQRNE 565 (1162)
Q Consensus 536 eE~k~qiqq~e~eIe~L~~eL~eLe~QL~e 565 (1162)
.+.+..+.+...+++.++..+..|+.++.+
T Consensus 92 ~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 92 TEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666666666665543
No 454
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=43.45 E-value=8.9 Score=36.68 Aligned_cols=15 Identities=40% Similarity=0.277 Sum_probs=13.3
Q ss_pred EeeeccCCCCCcccc
Q 001081 193 IFAYGQTHSGKTHTM 207 (1162)
Q Consensus 193 IFAYGQTGSGKTyTM 207 (1162)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 677899999999876
No 455
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=43.36 E-value=7.6e+02 Score=30.92 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001081 603 KLEEELKKRDALIERLHEENEKLFDRLTE 631 (1162)
Q Consensus 603 KLEEELkkrd~~ieqL~eEneKL~~~l~~ 631 (1162)
.|.++++...+.-.++..|..+|-.-|..
T Consensus 169 ~L~~qi~~L~~~n~~i~~ea~nLt~ALkg 197 (475)
T PRK10361 169 TLAHEIRNLQQLNAQMAQEAINLTRALKG 197 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56666677777777778888888777744
No 456
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=43.31 E-value=8e+02 Score=31.99 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001081 460 EIQDLKQEILGLRQALKEANDQC 482 (1162)
Q Consensus 460 eI~eLk~Ei~~Lr~~L~~~~eq~ 482 (1162)
-++-|.+++..++.++..++.+.
T Consensus 268 a~~fL~~qL~~l~~~L~~aE~~l 290 (726)
T PRK09841 268 SLEFLQRQLPEVRSELDQAEEKL 290 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554443
No 457
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=43.23 E-value=2e+02 Score=36.40 Aligned_cols=108 Identities=12% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHhhhHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001081 494 KVSFTLQSDLKSENYMLADKHKIE--KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSE 571 (1162)
Q Consensus 494 k~~~elq~~Lk~e~~~L~~k~k~~--kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s~e 571 (1162)
+...++++.++....+|....+.+ ++++.++++++.++....=.-=..+++..++++.++.+++....+.+
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~------- 236 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIK------- 236 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q ss_pred ccccccCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 001081 572 VRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEKASS 635 (1162)
Q Consensus 572 ~r~~~~~~~~~~~~s~~k~~~~~~d~a~lkkKLEEELkkrd~~ieqL~eEneKL~~~l~~k~~~ 635 (1162)
.++..++.+.++..+++.+++.--.+=+++|.++...
T Consensus 237 ---------------------------~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~~~ 273 (555)
T TIGR03545 237 ---------------------------SAKNDLQNDKKQLKADLAELKKAPQNDLKRLENKYAI 273 (555)
T ss_pred ---------------------------HHHHHHHHhHHHHHHHHHHHHhccHhHHHHHHHHhCC
No 458
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=42.83 E-value=4.8e+02 Score=28.47 Aligned_cols=42 Identities=19% Similarity=0.310 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 520 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIES 561 (1162)
Q Consensus 520 e~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~ 561 (1162)
+...+..++.+.......++..+.+.+.++..++.+...|..
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~a 140 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKA 140 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444433
No 459
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=42.82 E-value=27 Score=45.61 Aligned_cols=26 Identities=38% Similarity=0.355 Sum_probs=21.7
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..+.+|+|+.|.| +||||||-+-
T Consensus 29 ~a~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 29 YAIPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHHHhCCCceEEEc--CCCCChHHHH
Confidence 3456678999999988 9999999875
No 460
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=42.21 E-value=1.6e+02 Score=37.00 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=11.7
Q ss_pred HhhhHHHHhHhcCcccchhhhhhhh
Q 001081 752 IRDAVFAFIRKMEPTRVMDTMLVSR 776 (1162)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (1162)
|.++-|+||----.-||.-+|...|
T Consensus 414 lk~STF~lilpp~d~rv~S~~~~~r 438 (907)
T KOG2264|consen 414 LKSSTFCLILPPGDPRVISEMFFQR 438 (907)
T ss_pred hccceeEEEecCCCcchhhHHHHHH
Confidence 4455555554422223555555433
No 461
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=42.17 E-value=16 Score=44.12 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=20.9
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..+++|.| |++..+||||||.+.
T Consensus 30 ~ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 30 QAIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 45667788988 677789999999875
No 462
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=41.93 E-value=16 Score=47.17 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=24.1
Q ss_pred ChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 170 GQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 170 sQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
.|+.+-.....+...+-.|.-..++-||++|+|||++..
T Consensus 32 GQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 32 GQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred CcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 355554332233333334555577889999999999873
No 463
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=41.62 E-value=27 Score=42.59 Aligned_cols=19 Identities=37% Similarity=0.350 Sum_probs=16.4
Q ss_pred CceeEeeeccCCCCCcccc
Q 001081 189 YNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 189 yN~~IFAYGQTGSGKTyTM 207 (1162)
....|+-+|.+|+|||+|.
T Consensus 94 ~p~vI~lvG~~GsGKTTta 112 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTA 112 (437)
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 3567888999999999998
No 464
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=41.51 E-value=4.4e+02 Score=27.59 Aligned_cols=135 Identities=13% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHhhhcccccCc---chhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 422 NFSSRARSTVLSLGN---RDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFT 498 (1162)
Q Consensus 422 rFAsRAr~I~~~i~n---~~~ikk~k~i~~~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk~~k~~~e 498 (1162)
+|.+++..+.++++. .-.+...-.....+...+......|..|+.|+.+....++...+....+.+.++.....+.+
T Consensus 1 rl~~~l~~~~~Pp~~~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~ 80 (160)
T PF13094_consen 1 RLLRRLARLPFPPQKREDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREE 80 (160)
T ss_pred ChHhhCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhHHHhHHHH--------HHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 499 LQSDLKSENYMLA--------DKHKIE-------------KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKI 556 (1162)
Q Consensus 499 lq~~Lk~e~~~L~--------~k~k~~-------------kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL 556 (1162)
.....+....... ...... ++++..+..++..-++-...-..++......|+.....+
T Consensus 81 ~~~~~~~vL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~el~~l~~ql~~hl~s~~~n~~~l~~~~~~ie~~~~~L 159 (160)
T PF13094_consen 81 EEKKAHPVLQLDDSGVLELPELPQKSLLEASESRFAPTLCDEELLPLLKQLNKHLESMQNNLQQLKGLLEAIERSYAAL 159 (160)
T ss_pred HHhccchhhccccccccccccccccccccccccccCcccchHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhc
No 465
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=41.42 E-value=4.4e+02 Score=29.67 Aligned_cols=57 Identities=11% Similarity=0.056 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 507 NYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 563 (1162)
Q Consensus 507 ~~~L~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL 563 (1162)
+....+..+.++++.......++........++.|.+....+...|-++...|..|+
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444555555555555555555555444
No 466
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=41.41 E-value=6.3e+02 Score=29.42 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=18.5
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 502 DLKSENYMLADKHKIEKEQNAQLRNQVAQLL 532 (1162)
Q Consensus 502 ~Lk~e~~~L~~k~k~~kEe~~qL~~ql~qll 532 (1162)
...+....|..+++.-+.++++++++++.+.
T Consensus 130 nvasdea~L~~Kierrk~ElEr~rkRle~Lq 160 (338)
T KOG3647|consen 130 NVASDEAALGSKIERRKAELERTRKRLEALQ 160 (338)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666666555
No 467
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=41.32 E-value=12 Score=39.72 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=14.8
Q ss_pred eeEeeeccCCCCCcccc
Q 001081 191 VSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 191 ~~IFAYGQTGSGKTyTM 207 (1162)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 56889999999999965
No 468
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=41.19 E-value=2.1e+02 Score=31.64 Aligned_cols=20 Identities=30% Similarity=0.405 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001081 460 EIQDLKQEILGLRQALKEAN 479 (1162)
Q Consensus 460 eI~eLk~Ei~~Lr~~L~~~~ 479 (1162)
|+-.|+.|+..|...+..++
T Consensus 97 EevrLkrELa~Le~~l~~~~ 116 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVE 116 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555554443
No 469
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=41.03 E-value=12 Score=44.55 Aligned_cols=18 Identities=33% Similarity=0.257 Sum_probs=15.9
Q ss_pred ceeEeeeccCCCCCcccc
Q 001081 190 NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 190 N~~IFAYGQTGSGKTyTM 207 (1162)
...|.-+|+||+|||+|+
T Consensus 137 g~ii~lvGptGvGKTTti 154 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTT 154 (374)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457778999999999998
No 470
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=40.99 E-value=5.2e+02 Score=28.28 Aligned_cols=156 Identities=15% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 470 GLRQALKEANDQCVLLYNEVQKA-----WKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQ 544 (1162)
Q Consensus 470 ~Lr~~L~~~~eq~~~l~~Elqk~-----~k~~~elq~~Lk~e~~~L~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq 544 (1162)
..+..+..++.+...+..+.+.. .+...+...........+...++....++..+.+.+.+..+..+.....+..
T Consensus 24 ~~~~~~~~A~~~A~~i~~~A~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~ 103 (201)
T PF12072_consen 24 INRKKLEQAEKEAEQILEEAEREAEAIKKEAELEAKEEAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEK 103 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 545 RDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEK 624 (1162)
Q Consensus 545 ~e~eIe~L~~eL~eLe~QL~e~~~s~e~r~~~~~~~~~~~~s~~k~~~~~~d~a~lkkKLEEELkkrd~~ieqL~eEneK 624 (1162)
++..++..+.+|...+..+.................+..+.. ++.+-.-..-+..--++-....-..+.+++++...
T Consensus 104 ~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iAg---lT~eEAk~~Ll~~le~e~~~e~a~~ir~~eeeak~ 180 (201)
T PF12072_consen 104 REEELEKKEEELEQRKEELEEREEELEELIEEQQQELEEIAG---LTAEEAKEILLEKLEEEARREAAALIRRIEEEAKE 180 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHh
Q 001081 625 LFDR 628 (1162)
Q Consensus 625 L~~~ 628 (1162)
-.++
T Consensus 181 ~A~~ 184 (201)
T PF12072_consen 181 EADK 184 (201)
T ss_pred HHHH
No 471
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=40.97 E-value=3.8e+02 Score=34.59 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 453 ELYEREKEIQDLKQEILGLRQALKEANDQCV 483 (1162)
Q Consensus 453 el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~ 483 (1162)
+...+.++|.+|+.+|..++..++..+.+..
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~ 110 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVS 110 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777665554443
No 472
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=40.64 E-value=77 Score=41.08 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=25.7
Q ss_pred HHHhhHHHHHHHh-cCCceeEeeeccCCCCCcccc
Q 001081 174 LFSDVQPFVQSAL-DGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 174 VFe~V~PLV~svL-dGyN~~IFAYGQTGSGKTyTM 207 (1162)
||.........++ .|.|-||+.-|.+|||||.|.
T Consensus 74 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 74 VFAIADKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 5654333334433 689999999999999999997
No 473
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=40.63 E-value=1.7e+02 Score=36.26 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 458 EKEIQDLKQEILGLRQALKEANDQC 482 (1162)
Q Consensus 458 ~~eI~eLk~Ei~~Lr~~L~~~~eq~ 482 (1162)
...+.+|++++.+|+.++...+++.
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~ 94 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRG 94 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666555544
No 474
>PRK11519 tyrosine kinase; Provisional
Probab=40.42 E-value=7.3e+02 Score=32.28 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 459 KEIQDLKQEILGLRQALKEANDQC 482 (1162)
Q Consensus 459 ~eI~eLk~Ei~~Lr~~L~~~~eq~ 482 (1162)
.-+.-|++++..++.+|..++.+.
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l 290 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKL 290 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554443
No 475
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=40.41 E-value=9.9 Score=37.68 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=13.6
Q ss_pred EeeeccCCCCCcccc
Q 001081 193 IFAYGQTHSGKTHTM 207 (1162)
Q Consensus 193 IFAYGQTGSGKTyTM 207 (1162)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999876
No 476
>PF13514 AAA_27: AAA domain
Probab=40.37 E-value=1.2e+03 Score=32.14 Aligned_cols=17 Identities=29% Similarity=0.184 Sum_probs=8.6
Q ss_pred chhhccchhhHHHHHHH
Q 001081 719 LAVISDGANKLLMLVLA 735 (1162)
Q Consensus 719 ~~~~~~~~~~~~~~~~~ 735 (1162)
.+.|.+.+-+.+-+.+|
T Consensus 946 ~a~l~~~~~~~~~~~la 962 (1111)
T PF13514_consen 946 EAELEELAEEWAALRLA 962 (1111)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555544444
No 477
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=40.36 E-value=36 Score=38.67 Aligned_cols=70 Identities=19% Similarity=0.410 Sum_probs=41.4
Q ss_pred eeeceeeCCCCChHHHHHhhHHHHHHHhcCCce-eEeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhccccccccc
Q 001081 159 FEFDRVYGPHVGQAELFSDVQPFVQSALDGYNV-SIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATAR 237 (1162)
Q Consensus 159 F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~-~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~~~~~~~~ 237 (1162)
..+|...+-+...+.+.+.+ ..++.|..+ .++-||..|+|||.++- . ++......
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt----~~Fl~G~pannvLL~G~rGtGKSSlVk------a--------ll~~y~~~------ 79 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENT----EQFLQGLPANNVLLWGARGTGKSSLVK------A--------LLNEYADQ------ 79 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHH----HHHHcCCCCcceEEecCCCCCHHHHHH------H--------HHHHHhhc------
Confidence 34555555444444444433 456677654 36679999999998872 2 22222111
Q ss_pred cceeEEEEEEecchhccc
Q 001081 238 FNFAVTVFELYNEQLREL 255 (1162)
Q Consensus 238 f~V~VS~lEIYNE~V~DL 255 (1162)
.+.++||..+.+.||
T Consensus 80 ---GLRlIev~k~~L~~l 94 (249)
T PF05673_consen 80 ---GLRLIEVSKEDLGDL 94 (249)
T ss_pred ---CceEEEECHHHhccH
Confidence 166789988877766
No 478
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=40.32 E-value=22 Score=42.99 Aligned_cols=18 Identities=33% Similarity=0.335 Sum_probs=15.0
Q ss_pred eeEeeeccCCCCCccccc
Q 001081 191 VSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 191 ~~IFAYGQTGSGKTyTM~ 208 (1162)
.+|+-.|+||+|||+|+.
T Consensus 222 ~~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLA 239 (424)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 366777999999999983
No 479
>PRK10536 hypothetical protein; Provisional
Probab=40.25 E-value=14 Score=42.08 Aligned_cols=41 Identities=22% Similarity=0.245 Sum_probs=27.9
Q ss_pred eeeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 158 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 158 ~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.|.|-.|-+-+..|...... +.+ +..|+..|++||||||..
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~a-------l~~--~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLKA-------IES--KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred hcCCccccCCCHHHHHHHHH-------Hhc--CCeEEEECCCCCCHHHHH
Confidence 45555666666666554442 233 348999999999999987
No 480
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=40.06 E-value=7.7e+02 Score=30.05 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001081 598 SAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 632 (1162)
Q Consensus 598 a~lkkKLEEELkkrd~~ieqL~eEneKL~~~l~~k 632 (1162)
-.+.+.||+..++.++...++.-.+.-|-..+..|
T Consensus 359 d~L~keLeekkreleql~~q~~v~~saLdtCikaK 393 (442)
T PF06637_consen 359 DSLAKELEEKKRELEQLKMQLAVKTSALDTCIKAK 393 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhc
Confidence 35666777776777766677777777777777766
No 481
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=39.89 E-value=4.4e+02 Score=27.15 Aligned_cols=36 Identities=17% Similarity=0.345 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001081 533 QLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH 568 (1162)
Q Consensus 533 q~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~ 568 (1162)
...+.+..++..++...+.++.++++|...+...+.
T Consensus 77 er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 77 ERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445556666666677777777777777665443
No 482
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=39.80 E-value=7.5e+02 Score=29.81 Aligned_cols=19 Identities=5% Similarity=0.013 Sum_probs=13.4
Q ss_pred CCCHHHHHHHhHHHHHhhh
Q 001081 411 AANMSETLSSLNFSSRARS 429 (1162)
Q Consensus 411 ~~n~eETLsTLrFAsRAr~ 429 (1162)
..+..-|-..+.-|.+.+.
T Consensus 200 ~~W~~~s~~ni~~a~~e~~ 218 (384)
T PF03148_consen 200 ESWEEFSNENIQRAEKERQ 218 (384)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5667777778888776654
No 483
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=39.37 E-value=7.1e+02 Score=29.41 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001081 455 YEREKEIQDLKQEILGLRQAL 475 (1162)
Q Consensus 455 ~~l~~eI~eLk~Ei~~Lr~~L 475 (1162)
..+..++..|+.|+..|..+|
T Consensus 59 ~qy~~QLn~L~aENt~L~SkL 79 (305)
T PF14915_consen 59 FQYNGQLNVLKAENTMLNSKL 79 (305)
T ss_pred HHHhhhHHHHHHHHHHHhHHH
Confidence 344445555555555555544
No 484
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=39.36 E-value=82 Score=37.62 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 001081 548 TIKTLQAKINSIE 560 (1162)
Q Consensus 548 eIe~L~~eL~eLe 560 (1162)
.+..+.+.+.+|+
T Consensus 173 ~i~~l~~kl~DlE 185 (370)
T PF02994_consen 173 RIKKLEDKLDDLE 185 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333433333
No 485
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=39.15 E-value=6.6e+02 Score=29.00 Aligned_cols=49 Identities=14% Similarity=0.220 Sum_probs=30.6
Q ss_pred CCcceEEEEEeCCCCCCHHHHHHH-------hHHHHHhhhcccccCcchhhhhhhH
Q 001081 397 ESSKTLMIVNICPNAANMSETLSS-------LNFSSRARSTVLSLGNRDTIKKWRD 445 (1162)
Q Consensus 397 GNSkTvMIa~ISPs~~n~eETLsT-------LrFAsRAr~I~~~i~n~~~ikk~k~ 445 (1162)
|++.-++|..--++...+.+-.+| +-||..+|..+.+-........++.
T Consensus 102 ~d~q~LVvlss~~se~~~s~~r~~~p~pAPP~~FAD~mRtlv~pgs~i~P~~EmK~ 157 (311)
T PF04642_consen 102 GDPQDLVVLSSRESETRESERRSTSPLPAPPMPFADTMRTLVHPGSAIAPFDEMKE 157 (311)
T ss_pred CCCcceEEecccchhhhhhccccCCCCCCCCccHHHHHHhhcCCCCCCCChHHHhh
Confidence 445566666666777777777777 8899988887644333333333333
No 486
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=38.93 E-value=1.7e+02 Score=29.07 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 57 SKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQE 91 (1162)
Q Consensus 57 ~~~~~~~~l~~l~~~l~~~k~~~~~lrqe~~el~e 91 (1162)
...++..++..++.+++.++.++..|+.++..++.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34567788888888888888888888888887765
No 487
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=38.71 E-value=1.5e+02 Score=37.28 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001081 69 KDEIKFVKEDYLELRQEA 86 (1162)
Q Consensus 69 ~~~l~~~k~~~~~lrqe~ 86 (1162)
.-+|+++++++.+|..+.
T Consensus 53 evELElLrEDNEQl~tqY 70 (832)
T KOG2077|consen 53 EVELELLREDNEQLITQY 70 (832)
T ss_pred HHHHHHHhhhHHHHHHHH
Confidence 456677777777775544
No 488
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=38.66 E-value=8.4e+02 Score=30.03 Aligned_cols=43 Identities=21% Similarity=0.156 Sum_probs=32.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 001081 593 DGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEKASS 635 (1162)
Q Consensus 593 ~~~d~a~lkkKLEEELkkrd~~ieqL~eEneKL~~~l~~k~~~ 635 (1162)
.-.+-..-+.||+--+++..++|.+.....+-+...+..|.++
T Consensus 279 ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~p 321 (421)
T KOG2685|consen 279 RIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGP 321 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccccc
Confidence 3344445667888888888888888888888888888888444
No 489
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=38.50 E-value=5.8e+02 Score=29.00 Aligned_cols=8 Identities=13% Similarity=0.397 Sum_probs=3.7
Q ss_pred cceEEEEE
Q 001081 399 SKTLMIVN 406 (1162)
Q Consensus 399 SkTvMIa~ 406 (1162)
+..++|+|
T Consensus 58 ADlvlIAT 65 (290)
T COG4026 58 ADLVLIAT 65 (290)
T ss_pred CCEEEEee
Confidence 34445544
No 490
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=38.42 E-value=25 Score=42.62 Aligned_cols=17 Identities=41% Similarity=0.464 Sum_probs=15.7
Q ss_pred eeEeeeccCCCCCcccc
Q 001081 191 VSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 191 ~~IFAYGQTGSGKTyTM 207 (1162)
..|+-.|++|+|||+|+
T Consensus 242 ~vI~LVGptGvGKTTTi 258 (436)
T PRK11889 242 QTIALIGPTGVGKTTTL 258 (436)
T ss_pred cEEEEECCCCCcHHHHH
Confidence 57889999999999998
No 491
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=38.41 E-value=4.6e+02 Score=26.91 Aligned_cols=100 Identities=16% Similarity=0.224 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 452 KELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQL 531 (1162)
Q Consensus 452 ~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk~~k~~~elq~~Lk~e~~~L~~k~k~~kEe~~qL~~ql~ql 531 (1162)
..+..+...|+.+..|+..++.++.....+...+.+|+-+......++ +....+...++.++.++
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~---------------~~~~~~~~~L~~el~~l 80 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL---------------RALKKEVEELEQELEEL 80 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHH
Confidence 456778888888888988888888877666655555554332222211 22333444444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 532 LQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 566 (1162)
Q Consensus 532 lq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~ 566 (1162)
.+.++-...-+-++.++++.|+..+.+++.-.+.+
T Consensus 81 ~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 81 QQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQ 115 (120)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 54444444445555566666666666665544433
No 492
>PHA00729 NTP-binding motif containing protein
Probab=38.38 E-value=23 Score=39.60 Aligned_cols=29 Identities=28% Similarity=0.233 Sum_probs=21.2
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
.++..+..|--..|+-+|.+|+||||...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHH
Confidence 34555554433579999999999999874
No 493
>PRK04406 hypothetical protein; Provisional
Probab=38.16 E-value=2.3e+02 Score=26.65 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 519 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 565 (1162)
Q Consensus 519 Ee~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e 565 (1162)
+.+..|..++.......+++...+.+...+|..|+.++..|..++++
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555666666666666677777777777666654
No 494
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=38.12 E-value=3.6e+02 Score=33.59 Aligned_cols=7 Identities=86% Similarity=0.985 Sum_probs=3.6
Q ss_pred hhhhhHH
Q 001081 956 ALGQLLS 962 (1162)
Q Consensus 956 ~~~~~~~ 962 (1162)
||||.|+
T Consensus 415 alG~als 421 (472)
T TIGR03752 415 ALGQALS 421 (472)
T ss_pred HHHhhhc
Confidence 4555544
No 495
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=38.12 E-value=1.7e+02 Score=34.54 Aligned_cols=79 Identities=16% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 488 EVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 566 (1162)
Q Consensus 488 Elqk~~k~~~elq~~Lk~e~~~L~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~ 566 (1162)
|+++.++...-+...|..+..-|.-++..+|..+.++..++..--...++...++...+-.+..|+...++|+..|++.
T Consensus 123 EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QR 201 (405)
T KOG2010|consen 123 EVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQR 201 (405)
T ss_pred HHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=38.00 E-value=6.2e+02 Score=28.30 Aligned_cols=163 Identities=12% Similarity=0.147 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHH
Q 001081 447 ANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRN 526 (1162)
Q Consensus 447 ~~~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk~~k~~~elq~~Lk~e~~~L~~k~k~~kEe~~qL~~ 526 (1162)
...+......+...+.++..-+..+...+..+-++.................-...+......+.....-+-.....++.
T Consensus 25 ~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~ 104 (207)
T PF05010_consen 25 EQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKE 104 (207)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcccccccccCCCCCChhHHHHHHHH
Q 001081 527 QVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEE 606 (1162)
Q Consensus 527 ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s~e~r~~~~~~~~~~~~s~~k~~~~~~d~a~lkkKLEE 606 (1162)
-+..+..-++-++..+++....+...+++++.|...-.+.+..... ++..+.++...
T Consensus 105 vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANe-----------------------ei~~v~~~~~~ 161 (207)
T PF05010_consen 105 VIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANE-----------------------EIAQVRSKHQA 161 (207)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 001081 607 ELKKRDALIERLHEENEKLFDRLTEK 632 (1162)
Q Consensus 607 ELkkrd~~ieqL~eEneKL~~~l~~k 632 (1162)
++....+.+.+..-.+..|-..|.-+
T Consensus 162 e~~aLqa~lkk~e~~~~SLe~~LeQK 187 (207)
T PF05010_consen 162 ELLALQASLKKEEMKVQSLEESLEQK 187 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=37.81 E-value=6.9e+02 Score=28.82 Aligned_cols=106 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHH
Q 001081 448 NDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQ 527 (1162)
Q Consensus 448 ~~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk~~k~~~elq~~Lk~e~~~L~~k~k~~kEe~~qL~~q 527 (1162)
......+...+..+..-+.++...+.....++.+...+.+..........+....+......|.++++..++...+...+
T Consensus 186 ~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~~~~~e~e~ 265 (297)
T PF02841_consen 186 ESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEEREQLLQEQER 265 (297)
T ss_dssp HHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHH
Q 001081 528 VAQLLQLEQE------QKMQIQQRDSTIKTLQ 553 (1162)
Q Consensus 528 l~qllq~eeE------~k~qiqq~e~eIe~L~ 553 (1162)
+.+-...+++ ...++.....+|+.|+
T Consensus 266 ~l~~k~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 266 LLEQKLQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 498
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=37.75 E-value=1.8e+02 Score=36.57 Aligned_cols=74 Identities=14% Similarity=0.132 Sum_probs=0.0
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 001081 501 SDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRS 574 (1162)
Q Consensus 501 ~~Lk~e~~~L~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s~e~r~ 574 (1162)
.+++.-......++...+-+..+|+..++++..++++.+..|.+.+.++..|+.+|++-+.+++|+...+....
T Consensus 82 ~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl 155 (907)
T KOG2264|consen 82 REQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKL 155 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCce
No 499
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=37.68 E-value=3.2e+02 Score=24.96 Aligned_cols=61 Identities=10% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001081 509 MLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 569 (1162)
Q Consensus 509 ~L~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s 569 (1162)
.|+..+..+..-...+...+.....-......++++.+..+..|..+|..|+.++.+....
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 500
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=37.59 E-value=1.4e+02 Score=31.57 Aligned_cols=61 Identities=21% Similarity=0.305 Sum_probs=0.0
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 501 SDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLE--QEQKMQIQQRDSTIKTLQAKINSIES 561 (1162)
Q Consensus 501 ~~Lk~e~~~L~~k~k~~kEe~~qL~~ql~qllq~e--eE~k~qiqq~e~eIe~L~~eL~eLe~ 561 (1162)
..+..+...+..++..++.+...++.++..+.... +++...+.+++.++..++.++..|+.
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Done!