Query 001081
Match_columns 1162
No_of_seqs 449 out of 2286
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 10:04:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001081.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001081hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4etp_A Kinesin-like protein KA 100.0 2.6E-80 8.8E-85 710.9 36.6 367 60-433 7-400 (403)
2 3u06_A Protein claret segregat 100.0 1.8E-80 6.1E-85 713.3 34.0 369 58-434 5-386 (412)
3 3cob_A Kinesin heavy chain-lik 100.0 3.6E-80 1.2E-84 702.1 29.0 339 114-475 4-354 (369)
4 2h58_A Kinesin-like protein KI 100.0 2.9E-79 9.8E-84 686.2 29.6 311 115-431 4-329 (330)
5 3t0q_A AGR253WP; kinesin, alph 100.0 8.9E-79 3E-83 686.8 27.7 316 114-433 4-347 (349)
6 2rep_A Kinesin-like protein KI 100.0 1.3E-78 4.5E-83 690.7 25.9 317 114-430 21-376 (376)
7 1bg2_A Kinesin; motor protein, 100.0 9.6E-79 3.3E-83 680.7 24.2 306 114-430 6-325 (325)
8 2vvg_A Kinesin-2; motor protei 100.0 1.2E-78 4.2E-83 685.5 25.1 318 115-435 4-340 (350)
9 2y65_A Kinesin, kinesin heavy 100.0 1.6E-78 5.4E-83 687.9 26.0 311 114-435 10-338 (365)
10 1f9v_A Kinesin-like protein KA 100.0 3.1E-78 1.1E-82 681.9 25.8 315 115-433 3-344 (347)
11 3lre_A Kinesin-like protein KI 100.0 3.3E-78 1.1E-82 683.5 25.9 314 114-430 9-355 (355)
12 2zfi_A Kinesin-like protein KI 100.0 7.7E-78 2.6E-82 682.8 26.0 318 115-434 4-358 (366)
13 3b6u_A Kinesin-like protein KI 100.0 9.7E-78 3.3E-82 682.5 26.5 320 114-435 20-358 (372)
14 1goj_A Kinesin, kinesin heavy 100.0 9.7E-78 3.3E-82 679.5 25.9 315 114-435 5-335 (355)
15 3bfn_A Kinesin-like protein KI 100.0 3.2E-78 1.1E-82 689.0 21.8 319 113-434 19-351 (388)
16 3nwn_A Kinesin-like protein KI 100.0 1.3E-77 4.5E-82 679.1 24.7 314 114-430 23-359 (359)
17 2wbe_C Bipolar kinesin KRP-130 100.0 1E-77 3.5E-82 683.2 23.9 318 113-435 21-366 (373)
18 1x88_A Kinesin-like protein KI 100.0 4.9E-78 1.7E-82 683.0 20.7 319 113-434 6-354 (359)
19 1t5c_A CENP-E protein, centrom 100.0 1.3E-76 4.6E-81 668.9 26.6 311 114-435 3-333 (349)
20 3gbj_A KIF13B protein; kinesin 100.0 8.9E-77 3E-81 671.6 24.1 314 115-429 1-349 (354)
21 1v8k_A Kinesin-like protein KI 100.0 9.9E-77 3.4E-81 680.5 23.8 313 114-433 70-405 (410)
22 2nr8_A Kinesin-like protein KI 100.0 2E-76 6.7E-81 669.4 24.7 314 114-430 22-358 (358)
23 2heh_A KIF2C protein; kinesin, 100.0 1.6E-76 5.6E-81 674.8 23.2 312 114-432 50-384 (387)
24 2owm_A Nckin3-434, related to 100.0 6.1E-76 2.1E-80 681.0 26.7 320 114-435 37-418 (443)
25 4a14_A Kinesin, kinesin-like p 100.0 6.1E-76 2.1E-80 662.6 24.8 306 113-428 9-344 (344)
26 1ry6_A Internal kinesin; kines 100.0 5.5E-76 1.9E-80 666.1 23.9 315 116-434 1-335 (360)
27 3dc4_A Kinesin-like protein NO 100.0 1.9E-75 6.4E-80 658.3 26.8 302 113-434 20-339 (344)
28 4h1g_A Maltose binding protein 100.0 2.2E-72 7.6E-77 685.1 27.0 317 112-431 371-712 (715)
29 2o0a_A S.cerevisiae chromosome 99.9 1E-25 3.5E-30 245.2 12.8 264 103-432 15-291 (298)
30 2kin_B Kinesin; motor protein, 99.9 1.2E-25 4.3E-30 212.6 2.7 79 357-435 2-81 (100)
31 3kin_B Kinesin heavy chain; mo 99.9 1.2E-24 4.2E-29 211.3 8.5 76 360-435 1-77 (117)
32 4etp_B Spindle POLE BODY-assoc 97.1 0.0063 2.1E-07 67.9 14.9 172 63-259 3-183 (333)
33 3na7_A HP0958; flagellar bioge 96.3 0.23 7.9E-06 53.8 20.2 33 599-631 154-186 (256)
34 2v71_A Nuclear distribution pr 96.2 0.3 1E-05 51.3 19.3 22 611-632 159-180 (189)
35 3oja_B Anopheles plasmodium-re 96.2 0.049 1.7E-06 64.7 15.2 25 404-428 391-415 (597)
36 3ghg_A Fibrinogen alpha chain; 95.9 0.2 6.8E-06 59.0 17.8 97 453-549 58-154 (562)
37 3na7_A HP0958; flagellar bioge 95.6 2.4 8.3E-05 45.8 24.3 50 513-562 98-147 (256)
38 3oja_B Anopheles plasmodium-re 95.6 0.093 3.2E-06 62.3 14.1 16 460-475 457-472 (597)
39 1i84_S Smooth muscle myosin he 95.2 0.068 2.3E-06 69.4 12.0 39 215-253 432-471 (1184)
40 1i84_S Smooth muscle myosin he 95.1 0.054 1.8E-06 70.4 10.9 22 459-480 857-878 (1184)
41 2dfs_A Myosin-5A; myosin-V, in 94.3 0.69 2.3E-05 59.7 17.6 40 215-254 406-445 (1080)
42 3ec2_A DNA replication protein 94.1 0.01 3.5E-07 59.4 0.4 51 157-207 5-55 (180)
43 3vkg_A Dynein heavy chain, cyt 93.8 2.7 9.2E-05 59.7 23.1 47 1076-1122 2981-3035(3245)
44 2fxo_A Myosin heavy chain, car 93.4 6.3 0.00021 38.6 18.9 49 517-565 74-122 (129)
45 3vkg_A Dynein heavy chain, cyt 93.3 3 0.0001 59.3 22.2 33 456-488 1931-1963(3245)
46 1deq_A Fibrinogen (alpha chain 93.2 7.7 0.00026 44.4 21.4 95 455-549 63-157 (390)
47 2w58_A DNAI, primosome compone 92.5 0.038 1.3E-06 56.0 1.7 51 157-207 20-71 (202)
48 2dfs_A Myosin-5A; myosin-V, in 92.3 3.8 0.00013 53.0 19.9 21 540-560 1023-1043(1080)
49 3o0z_A RHO-associated protein 91.9 12 0.0004 38.7 18.9 18 546-563 89-106 (168)
50 2v71_A Nuclear distribution pr 91.7 15 0.0005 38.6 21.2 35 440-474 12-46 (189)
51 2qgz_A Helicase loader, putati 89.9 0.1 3.4E-06 57.8 1.8 51 158-208 120-170 (308)
52 4b4t_K 26S protease regulatory 89.8 1.2 4E-05 52.1 10.6 73 158-230 168-263 (428)
53 3oja_A Leucine-rich immune mol 86.0 25 0.00085 40.7 18.8 12 330-341 237-248 (487)
54 3u1c_A Tropomyosin alpha-1 cha 85.8 24 0.00081 33.3 16.0 53 508-560 47-99 (101)
55 3oja_A Leucine-rich immune mol 85.5 6.1 0.00021 45.9 13.3 36 531-566 433-468 (487)
56 2fxo_A Myosin heavy chain, car 85.5 29 0.00098 34.0 18.9 18 543-560 107-124 (129)
57 3tnu_A Keratin, type I cytoske 85.0 11 0.00037 37.0 12.9 43 513-555 85-127 (131)
58 3tnu_B Keratin, type II cytosk 84.5 19 0.00065 35.1 14.2 39 516-554 86-124 (129)
59 4b4t_M 26S protease regulatory 84.5 3.4 0.00012 48.2 10.5 50 158-207 177-232 (434)
60 3ghg_A Fibrinogen alpha chain; 84.1 12 0.0004 44.6 14.4 39 523-561 114-152 (562)
61 3uk6_A RUVB-like 2; hexameric 83.3 0.59 2E-05 51.5 3.3 46 158-207 40-87 (368)
62 3bos_A Putative DNA replicatio 83.1 0.44 1.5E-05 48.4 2.1 45 159-207 25-69 (242)
63 2bjv_A PSP operon transcriptio 82.4 0.34 1.2E-05 51.3 0.9 45 158-207 2-46 (265)
64 1m1j_A Fibrinogen alpha subuni 82.4 28 0.00094 40.9 16.3 94 456-549 62-155 (491)
65 1m1j_B Fibrinogen beta chain; 81.3 46 0.0016 39.3 18.2 26 541-566 169-194 (464)
66 3u59_A Tropomyosin beta chain; 80.0 40 0.0014 31.6 15.5 51 510-560 49-99 (101)
67 1l8q_A Chromosomal replication 79.4 0.76 2.6E-05 50.2 2.4 49 157-207 6-54 (324)
68 1jbk_A CLPB protein; beta barr 79.4 0.85 2.9E-05 44.1 2.5 29 179-207 32-60 (195)
69 3h4m_A Proteasome-activating n 78.4 0.81 2.8E-05 48.7 2.2 51 157-207 12-68 (285)
70 2r62_A Cell division protease 78.1 1 3.5E-05 47.5 2.8 51 157-207 6-61 (268)
71 4b4t_J 26S protease regulatory 76.1 8.6 0.0003 44.6 10.0 49 159-207 145-199 (405)
72 2kjq_A DNAA-related protein; s 76.1 0.8 2.7E-05 45.2 1.3 41 158-207 13-53 (149)
73 2v1u_A Cell division control p 75.8 0.77 2.6E-05 50.3 1.1 49 159-207 12-61 (387)
74 2p65_A Hypothetical protein PF 75.7 0.97 3.3E-05 43.9 1.7 29 179-207 32-60 (187)
75 1d2n_A N-ethylmaleimide-sensit 75.4 1.1 3.7E-05 47.7 2.1 21 187-207 61-81 (272)
76 1m1j_B Fibrinogen beta chain; 75.4 76 0.0026 37.5 17.6 18 457-474 98-115 (464)
77 2i1j_A Moesin; FERM, coiled-co 75.2 8.4 0.00029 46.5 9.9 108 456-563 339-449 (575)
78 1lv7_A FTSH; alpha/beta domain 75.1 1.6 5.5E-05 45.9 3.3 47 157-207 7-62 (257)
79 1f5n_A Interferon-induced guan 75.0 41 0.0014 40.8 15.8 18 545-562 565-582 (592)
80 3te6_A Regulatory protein SIR3 75.0 1 3.5E-05 50.5 1.8 30 178-207 32-62 (318)
81 3q8t_A Beclin-1; autophagy, AT 74.6 57 0.0019 30.6 15.2 47 520-566 47-93 (96)
82 1fnn_A CDC6P, cell division co 74.2 1.5 5E-05 48.3 2.8 39 169-207 20-61 (389)
83 3hnw_A Uncharacterized protein 73.8 62 0.0021 32.2 14.1 49 517-565 87-135 (138)
84 4h22_A Leucine-rich repeat fli 73.7 21 0.00072 34.1 10.1 65 501-565 19-83 (103)
85 1ixz_A ATP-dependent metallopr 73.6 1.1 3.9E-05 46.9 1.7 51 157-207 11-66 (254)
86 4b4t_L 26S protease subunit RP 73.5 8.9 0.0003 44.8 9.3 50 158-207 177-232 (437)
87 1g8p_A Magnesium-chelatase 38 73.2 1.3 4.6E-05 48.1 2.2 44 157-207 19-62 (350)
88 3t15_A Ribulose bisphosphate c 72.8 1.3 4.5E-05 48.2 2.1 47 161-207 2-53 (293)
89 2qz4_A Paraplegin; AAA+, SPG7, 71.8 2.3 8E-05 44.2 3.6 44 160-207 4-56 (262)
90 2z4s_A Chromosomal replication 71.8 1.6 5.4E-05 50.6 2.5 48 157-207 100-147 (440)
91 3ghg_B Fibrinogen beta chain; 71.7 72 0.0025 37.6 16.0 26 455-480 91-116 (461)
92 3syl_A Protein CBBX; photosynt 71.4 2.1 7.2E-05 45.9 3.2 20 188-207 65-84 (309)
93 3a7p_A Autophagy protein 16; c 71.3 47 0.0016 33.7 12.6 45 520-564 69-113 (152)
94 2c9o_A RUVB-like 1; hexameric 70.6 2 6.9E-05 49.7 3.0 46 158-207 33-80 (456)
95 1qde_A EIF4A, translation init 70.2 1.8 6.2E-05 44.1 2.2 26 180-207 43-68 (224)
96 1vec_A ATP-dependent RNA helic 70.0 2 7E-05 43.1 2.6 26 180-207 32-57 (206)
97 3hnw_A Uncharacterized protein 69.1 31 0.001 34.4 10.7 45 519-563 82-126 (138)
98 2chg_A Replication factor C sm 69.1 1.9 6.4E-05 42.7 2.0 34 171-207 22-55 (226)
99 2qby_B CDC6 homolog 3, cell di 69.1 2.1 7.3E-05 47.1 2.7 39 169-207 23-62 (384)
100 2gxq_A Heat resistant RNA depe 69.0 2 7E-05 43.0 2.3 25 181-207 31-55 (207)
101 3mq7_A Bone marrow stromal ant 68.8 90 0.0031 30.5 15.2 22 611-632 90-111 (121)
102 3cf0_A Transitional endoplasmi 67.9 1.6 5.4E-05 47.6 1.3 50 158-207 11-66 (301)
103 3ghg_C Fibrinogen gamma chain; 67.8 58 0.002 37.9 14.1 29 452-480 31-59 (411)
104 1deq_A Fibrinogen (alpha chain 67.7 75 0.0026 36.5 14.6 37 497-533 112-148 (390)
105 2qby_A CDC6 homolog 1, cell di 67.7 1.7 5.8E-05 47.4 1.5 39 169-207 23-62 (386)
106 3mq9_A Bone marrow stromal ant 67.7 82 0.0028 36.2 15.7 25 541-565 444-468 (471)
107 2v66_B Nuclear distribution pr 67.0 95 0.0032 30.0 17.0 25 456-480 7-31 (111)
108 1iy2_A ATP-dependent metallopr 66.3 2.4 8.3E-05 45.3 2.3 47 157-207 35-90 (278)
109 3i00_A HIP-I, huntingtin-inter 65.7 45 0.0015 32.6 10.8 24 456-479 12-35 (120)
110 3dkp_A Probable ATP-dependent 65.6 2.6 8.7E-05 43.8 2.3 26 180-207 58-83 (245)
111 1sxj_C Activator 1 40 kDa subu 65.4 2.6 8.8E-05 46.4 2.4 41 160-207 23-63 (340)
112 3pfi_A Holliday junction ATP-d 65.3 3 0.0001 45.4 2.9 44 160-207 27-72 (338)
113 3bor_A Human initiation factor 64.5 1.8 6E-05 45.2 0.8 26 180-207 59-84 (237)
114 1p9r_A General secretion pathw 64.0 2.9 9.8E-05 48.5 2.5 28 180-207 157-184 (418)
115 3o0z_A RHO-associated protein 63.8 1.4E+02 0.0048 30.8 20.1 6 549-554 127-132 (168)
116 2jee_A YIIU; FTSZ, septum, coi 63.5 79 0.0027 29.1 11.2 47 511-557 26-72 (81)
117 3co5_A Putative two-component 63.3 3.3 0.00011 40.0 2.5 35 173-208 11-45 (143)
118 1hqc_A RUVB; extended AAA-ATPa 63.1 4 0.00014 44.0 3.3 44 160-207 10-55 (324)
119 2pl3_A Probable ATP-dependent 62.9 3.1 0.00011 42.9 2.3 26 180-207 54-79 (236)
120 1t6n_A Probable ATP-dependent 61.6 3.2 0.00011 42.2 2.1 26 180-207 43-68 (220)
121 3ly5_A ATP-dependent RNA helic 61.5 2.6 8.9E-05 44.9 1.5 26 180-207 83-108 (262)
122 3ol1_A Vimentin; structural ge 61.5 87 0.003 30.2 12.0 9 553-561 107-115 (119)
123 3tnu_A Keratin, type I cytoske 61.3 1.1E+02 0.0039 29.7 13.0 7 461-467 47-53 (131)
124 3jvv_A Twitching mobility prot 61.3 3 0.0001 47.3 2.0 27 181-207 114-140 (356)
125 3iuy_A Probable ATP-dependent 61.2 3.4 0.00012 42.4 2.2 26 180-207 49-74 (228)
126 1njg_A DNA polymerase III subu 61.0 4.3 0.00015 40.5 2.9 34 171-207 28-62 (250)
127 1w5s_A Origin recognition comp 60.8 3.9 0.00013 45.3 2.8 37 171-207 27-69 (412)
128 1iqp_A RFCS; clamp loader, ext 60.0 4.9 0.00017 42.9 3.3 35 170-207 29-63 (327)
129 3b6e_A Interferon-induced heli 59.8 1.9 6.5E-05 43.2 0.0 24 182-207 42-65 (216)
130 3tnu_B Keratin, type II cytosk 59.4 1.3E+02 0.0045 29.1 14.5 15 461-475 38-52 (129)
131 1wrb_A DJVLGB; RNA helicase, D 59.3 3.8 0.00013 42.8 2.2 26 180-207 52-77 (253)
132 3pvs_A Replication-associated 58.0 3.8 0.00013 47.7 2.2 39 169-207 29-67 (447)
133 3eiq_A Eukaryotic initiation f 57.9 4.6 0.00016 44.6 2.7 26 180-207 69-94 (414)
134 4fcw_A Chaperone protein CLPB; 57.5 5.3 0.00018 42.7 3.0 38 170-207 21-64 (311)
135 3fmo_B ATP-dependent RNA helic 56.6 4.3 0.00015 44.3 2.1 28 180-207 121-148 (300)
136 2oxc_A Probable ATP-dependent 56.6 4.6 0.00016 41.7 2.2 26 180-207 53-78 (230)
137 3u61_B DNA polymerase accessor 56.5 5.6 0.00019 43.1 3.0 35 170-207 30-65 (324)
138 3mq9_A Bone marrow stromal ant 56.5 2E+02 0.0068 33.0 16.2 28 533-560 443-470 (471)
139 3llm_A ATP-dependent RNA helic 56.4 4.1 0.00014 42.5 1.9 26 180-207 68-93 (235)
140 3fe2_A Probable ATP-dependent 56.2 4.1 0.00014 42.4 1.8 25 181-207 59-83 (242)
141 3ber_A Probable ATP-dependent 55.9 4.8 0.00016 42.5 2.3 26 180-207 72-97 (249)
142 3vfd_A Spastin; ATPase, microt 55.8 5.1 0.00018 45.1 2.7 47 157-207 110-165 (389)
143 2oap_1 GSPE-2, type II secreti 55.8 16 0.00054 43.4 6.9 19 187-207 259-277 (511)
144 1gvn_B Zeta; postsegregational 55.6 9.8 0.00033 41.4 4.8 38 170-207 8-50 (287)
145 4b4t_I 26S protease regulatory 55.5 19 0.00066 42.1 7.4 49 159-207 179-233 (437)
146 3iox_A AGI/II, PA; alpha helix 55.4 2.8E+02 0.0096 33.0 16.9 21 457-477 7-27 (497)
147 2w83_C C-JUN-amino-terminal ki 55.3 52 0.0018 29.9 8.4 44 521-564 32-75 (77)
148 1ofh_A ATP-dependent HSL prote 54.9 5.6 0.00019 42.2 2.7 18 190-207 50-67 (310)
149 2v66_B Nuclear distribution pr 54.9 1.6E+02 0.0053 28.6 17.2 25 459-483 3-27 (111)
150 1m1j_C Fibrinogen gamma chain; 54.3 91 0.0031 36.2 12.7 25 542-566 107-131 (409)
151 1m1j_A Fibrinogen alpha subuni 53.7 2.8E+02 0.0097 32.7 16.3 48 520-567 112-159 (491)
152 2eyu_A Twitching motility prot 53.1 4.7 0.00016 43.5 1.7 20 188-207 23-42 (261)
153 3n70_A Transport activator; si 52.9 6.8 0.00023 37.8 2.7 20 188-207 22-41 (145)
154 1xwi_A SKD1 protein; VPS4B, AA 52.8 3.3 0.00011 45.8 0.4 45 159-207 9-62 (322)
155 1q0u_A Bstdead; DEAD protein, 52.4 3.5 0.00012 42.1 0.6 25 181-207 34-58 (219)
156 2zqm_A Prefoldin beta subunit 52.3 1.4E+02 0.0049 27.7 11.7 37 596-632 74-110 (117)
157 2eqb_B RAB guanine nucleotide 52.1 1.6E+02 0.0055 27.9 15.0 26 450-475 10-35 (97)
158 3fht_A ATP-dependent RNA helic 51.7 6 0.00021 43.5 2.3 28 180-207 54-81 (412)
159 1jr3_A DNA polymerase III subu 51.6 8 0.00027 42.3 3.3 37 169-207 19-55 (373)
160 2j0s_A ATP-dependent RNA helic 51.5 5.7 0.00019 44.1 2.1 26 180-207 66-91 (410)
161 3b9p_A CG5977-PA, isoform A; A 51.3 6.7 0.00023 41.9 2.6 51 157-207 16-71 (297)
162 3fmp_B ATP-dependent RNA helic 51.3 5.9 0.0002 45.4 2.2 27 180-206 121-147 (479)
163 1u0j_A DNA replication protein 51.0 7.5 0.00026 42.7 2.9 29 179-207 90-121 (267)
164 1ic2_A Tropomyosin alpha chain 50.8 1E+02 0.0035 27.7 9.9 13 548-560 42-54 (81)
165 3pey_A ATP-dependent RNA helic 50.8 6.1 0.00021 43.0 2.2 28 180-207 34-61 (395)
166 3a7p_A Autophagy protein 16; c 50.7 1.8E+02 0.0061 29.6 12.4 19 460-478 69-87 (152)
167 2chq_A Replication factor C sm 50.4 3.4 0.00012 44.0 0.1 41 160-207 15-55 (319)
168 3d8b_A Fidgetin-like protein 1 49.7 7 0.00024 43.6 2.5 46 158-207 80-134 (357)
169 1fxk_A Prefoldin; archaeal pro 48.6 1.3E+02 0.0046 27.5 10.7 32 598-629 71-102 (107)
170 2efr_A General control protein 48.6 2.3E+02 0.008 28.8 19.5 23 464-486 26-48 (155)
171 2z0m_A 337AA long hypothetical 48.4 6.9 0.00024 41.7 2.1 25 181-207 24-48 (337)
172 1s2m_A Putative ATP-dependent 48.4 6.3 0.00021 43.5 1.8 26 180-207 50-75 (400)
173 1tue_A Replication protein E1; 47.9 6.6 0.00023 41.9 1.8 50 159-208 16-76 (212)
174 3h1t_A Type I site-specific re 47.2 7.7 0.00026 45.9 2.4 27 181-208 190-216 (590)
175 1in4_A RUVB, holliday junction 46.4 9.6 0.00033 42.1 2.9 44 160-207 23-68 (334)
176 2fz4_A DNA repair protein RAD2 46.2 7.2 0.00024 41.1 1.8 25 182-208 102-126 (237)
177 2i4i_A ATP-dependent RNA helic 46.2 7.8 0.00027 42.9 2.1 26 180-207 44-69 (417)
178 1sxj_D Activator 1 41 kDa subu 45.8 7.3 0.00025 42.2 1.8 27 181-207 49-75 (353)
179 2ocy_A RAB guanine nucleotide 45.7 2.6E+02 0.0089 28.5 18.7 23 538-560 120-142 (154)
180 3eie_A Vacuolar protein sortin 45.0 8.3 0.00028 42.2 2.1 46 158-207 14-68 (322)
181 1rif_A DAR protein, DNA helica 44.9 5.9 0.0002 42.3 0.9 25 182-208 122-146 (282)
182 2ocy_A RAB guanine nucleotide 44.8 2.7E+02 0.0091 28.4 14.8 30 540-569 115-144 (154)
183 2ewv_A Twitching motility prot 44.6 6.1 0.00021 44.8 1.0 27 181-207 127-153 (372)
184 2qp9_X Vacuolar protein sortin 44.3 5.6 0.00019 44.5 0.6 50 158-207 47-101 (355)
185 4h22_A Leucine-rich repeat fli 44.2 96 0.0033 29.7 8.8 42 450-491 14-55 (103)
186 1m1j_C Fibrinogen gamma chain; 43.9 1.1E+02 0.0036 35.7 11.0 47 517-563 89-135 (409)
187 1sxj_E Activator 1 40 kDa subu 43.7 4.7 0.00016 44.0 -0.1 42 160-207 12-53 (354)
188 1x8y_A Lamin A/C; structural p 43.7 1.6E+02 0.0054 26.9 10.1 39 519-557 42-80 (86)
189 3oiy_A Reverse gyrase helicase 43.3 8.5 0.00029 43.0 1.9 26 180-207 28-53 (414)
190 3m50_P N.plumbaginifolia H+-tr 42.3 9 0.00031 29.2 1.2 17 852-868 14-30 (31)
191 3u59_A Tropomyosin beta chain; 42.0 2.2E+02 0.0075 26.5 14.5 12 549-560 81-92 (101)
192 3mq7_A Bone marrow stromal ant 41.8 2.6E+02 0.0089 27.3 14.5 28 537-564 75-102 (121)
193 3nmd_A CGMP dependent protein 41.8 62 0.0021 29.1 6.7 16 541-556 48-63 (72)
194 3fho_A ATP-dependent RNA helic 41.7 9.5 0.00032 44.6 2.0 27 181-207 149-175 (508)
195 1sxj_B Activator 1 37 kDa subu 41.2 8.9 0.0003 40.8 1.5 35 170-207 25-59 (323)
196 3cve_A Homer protein homolog 1 41.1 1.3E+02 0.0046 27.0 8.8 54 55-108 13-66 (72)
197 1go4_E MAD1 (mitotic arrest de 41.1 96 0.0033 29.5 8.3 29 537-565 16-44 (100)
198 3ol1_A Vimentin; structural ge 41.0 2.5E+02 0.0086 27.0 15.4 18 544-561 87-104 (119)
199 2x8a_A Nuclear valosin-contain 40.9 5.9 0.0002 42.8 0.1 50 158-207 6-61 (274)
200 4fla_A Regulation of nuclear P 40.8 2.6E+02 0.0088 28.3 12.0 30 539-568 113-145 (152)
201 1ojl_A Transcriptional regulat 40.8 11 0.00038 41.2 2.3 33 174-207 10-42 (304)
202 1qvr_A CLPB protein; coiled co 40.7 7.5 0.00026 48.6 1.0 42 160-208 168-209 (854)
203 1xti_A Probable ATP-dependent 40.6 10 0.00035 41.4 2.0 26 180-207 37-62 (391)
204 3hhm_B NISH2 P85alpha; PI3KCA, 40.5 4.7E+02 0.016 29.9 18.1 27 453-479 141-167 (373)
205 3i5x_A ATP-dependent RNA helic 40.5 12 0.00042 43.7 2.7 28 180-207 101-128 (563)
206 3pxi_A Negative regulator of g 40.4 14 0.00047 45.5 3.2 38 170-207 495-538 (758)
207 2db3_A ATP-dependent RNA helic 40.1 11 0.00037 43.1 2.1 26 180-207 85-110 (434)
208 3hws_A ATP-dependent CLP prote 40.0 11 0.00039 41.7 2.3 18 190-207 51-68 (363)
209 2zan_A Vacuolar protein sortin 39.8 6 0.0002 45.8 -0.1 47 157-207 129-184 (444)
210 3hu3_A Transitional endoplasmi 39.8 9.1 0.00031 45.1 1.5 20 188-207 236-255 (489)
211 2r44_A Uncharacterized protein 39.7 7.6 0.00026 42.3 0.7 16 192-207 48-63 (331)
212 3cvf_A Homer-3, homer protein 39.7 1.4E+02 0.0048 27.3 8.9 54 55-108 19-72 (79)
213 2e7s_A RAB guanine nucleotide 39.5 1.2E+02 0.0041 30.3 9.1 19 542-560 112-130 (135)
214 1n0w_A DNA repair protein RAD5 39.5 11 0.00038 38.5 1.9 28 180-207 11-41 (243)
215 2b9c_A Striated-muscle alpha t 39.4 1.7E+02 0.0058 29.4 10.4 19 544-562 98-116 (147)
216 3jsv_C NF-kappa-B essential mo 39.3 1.6E+02 0.0055 27.7 9.3 15 458-472 22-36 (94)
217 4a2p_A RIG-I, retinoic acid in 38.7 12 0.00042 43.0 2.3 25 181-207 15-39 (556)
218 2p5t_B PEZT; postsegregational 38.5 21 0.00072 37.6 3.9 29 179-207 16-49 (253)
219 3s4r_A Vimentin; alpha-helix, 38.4 2.5E+02 0.0084 26.1 10.9 20 457-476 21-40 (93)
220 3nmd_A CGMP dependent protein 38.3 1.1E+02 0.0038 27.5 7.7 26 540-565 40-65 (72)
221 1c4o_A DNA nucleotide excision 38.3 16 0.00056 44.5 3.4 46 159-209 2-47 (664)
222 3swk_A Vimentin; cytoskeleton, 38.2 2.4E+02 0.0081 25.8 10.3 15 544-558 67-81 (86)
223 1r6b_X CLPA protein; AAA+, N-t 38.0 17 0.00058 44.5 3.5 38 170-207 462-505 (758)
224 3e70_C DPA, signal recognition 37.9 20 0.00068 40.1 3.8 18 190-207 129-146 (328)
225 1um8_A ATP-dependent CLP prote 37.9 11 0.00037 42.0 1.7 18 190-207 72-89 (376)
226 1fuu_A Yeast initiation factor 37.9 7.5 0.00025 42.5 0.3 26 180-207 50-75 (394)
227 2v1x_A ATP-dependent DNA helic 37.8 16 0.00054 44.0 3.1 26 180-207 51-76 (591)
228 1sxj_A Activator 1 95 kDa subu 37.8 9.2 0.00031 45.0 1.1 44 160-207 37-94 (516)
229 2eqb_B RAB guanine nucleotide 37.7 2.7E+02 0.0092 26.4 13.7 46 446-491 13-58 (97)
230 3q8t_A Beclin-1; autophagy, AT 37.5 2.6E+02 0.0088 26.1 14.2 25 457-481 9-33 (96)
231 1qvr_A CLPB protein; coiled co 37.4 16 0.00055 45.7 3.2 37 171-207 563-605 (854)
232 4b3f_X DNA-binding protein smu 37.3 12 0.00042 45.2 2.1 26 181-207 197-222 (646)
233 3b9q_A Chloroplast SRP recepto 37.0 20 0.00068 39.5 3.5 17 191-207 101-117 (302)
234 3iv1_A Tumor susceptibility ge 36.9 2.3E+02 0.0079 25.9 9.7 17 544-560 57-73 (78)
235 4gkw_A Spindle assembly abnorm 36.7 3.3E+02 0.011 27.1 20.9 16 615-630 142-157 (167)
236 3tbk_A RIG-I helicase domain; 36.6 14 0.00047 42.3 2.3 25 181-207 12-36 (555)
237 3b85_A Phosphate starvation-in 36.6 15 0.00051 38.3 2.3 25 181-207 15-39 (208)
238 3okq_A BUD site selection prot 36.4 3.5E+02 0.012 27.2 17.3 94 455-548 24-122 (141)
239 2k48_A Nucleoprotein; viral pr 36.3 2.7E+02 0.0091 26.7 10.4 30 539-568 74-103 (107)
240 3bas_A Myosin heavy chain, str 36.3 2.5E+02 0.0087 25.6 10.9 24 456-479 11-34 (89)
241 1gmj_A ATPase inhibitor; coile 36.3 2E+02 0.007 26.6 9.3 23 538-560 56-78 (84)
242 3ghg_C Fibrinogen gamma chain; 36.2 2.7E+02 0.0092 32.4 12.7 17 548-564 113-129 (411)
243 2jlq_A Serine protease subunit 35.9 9.7 0.00033 43.9 0.8 25 182-207 12-36 (451)
244 4emc_A Monopolin complex subun 35.8 1.6E+02 0.0054 31.0 9.6 27 450-476 11-37 (190)
245 2w0m_A SSO2452; RECA, SSPF, un 35.2 13 0.00045 37.4 1.6 28 180-207 10-40 (235)
246 1gk4_A Vimentin; intermediate 35.1 2.6E+02 0.0087 25.3 12.2 22 460-481 2-23 (84)
247 2cvh_A DNA repair and recombin 35.0 15 0.0005 37.0 1.9 28 180-207 7-37 (220)
248 3pxg_A Negative regulator of g 34.9 18 0.0006 42.2 2.8 42 160-208 178-219 (468)
249 1hv8_A Putative ATP-dependent 34.6 14 0.00048 39.7 1.8 26 181-207 36-61 (367)
250 3upu_A ATP-dependent DNA helic 34.1 16 0.00054 42.2 2.2 36 168-207 27-62 (459)
251 1e9r_A Conjugal transfer prote 33.7 9.7 0.00033 43.4 0.4 18 190-207 53-70 (437)
252 4gp7_A Metallophosphoesterase; 33.4 11 0.00037 37.5 0.6 18 191-208 10-27 (171)
253 2fwr_A DNA repair protein RAD2 33.2 15 0.00053 41.8 1.9 25 181-207 101-125 (472)
254 3iv1_A Tumor susceptibility ge 33.1 2.8E+02 0.0097 25.3 10.9 43 519-561 18-60 (78)
255 2ce7_A Cell division protein F 33.0 21 0.00072 42.1 3.1 47 157-207 11-66 (476)
256 1f5n_A Interferon-induced guan 33.0 5.8E+02 0.02 30.9 15.6 21 549-569 562-582 (592)
257 2v4h_A NF-kappa-B essential mo 32.9 3.5E+02 0.012 26.2 12.6 23 460-482 25-47 (110)
258 4gl2_A Interferon-induced heli 32.7 17 0.00058 43.7 2.2 25 181-207 15-39 (699)
259 2zqm_A Prefoldin beta subunit 32.4 3.1E+02 0.01 25.4 14.0 29 539-567 83-111 (117)
260 2dhr_A FTSH; AAA+ protein, hex 32.3 24 0.00081 41.9 3.3 46 158-207 27-81 (499)
261 4a74_A DNA repair and recombin 32.2 18 0.0006 36.6 2.0 28 180-207 12-42 (231)
262 3lw7_A Adenylate kinase relate 32.2 13 0.00043 35.5 0.9 16 192-207 3-18 (179)
263 1w36_D RECD, exodeoxyribonucle 32.0 17 0.00057 43.9 2.0 24 182-207 158-181 (608)
264 1t6f_A Geminin; coiled-coil, c 31.9 57 0.0019 25.7 4.2 27 601-627 9-35 (37)
265 3sqw_A ATP-dependent RNA helic 31.8 20 0.00069 42.3 2.7 28 180-207 50-77 (579)
266 3l4q_C Phosphatidylinositol 3- 31.7 4.5E+02 0.015 27.1 17.0 45 520-564 104-148 (170)
267 1gmj_A ATPase inhibitor; coile 31.3 2.7E+02 0.0092 25.8 9.3 30 539-568 50-79 (84)
268 1l8d_A DNA double-strand break 31.2 3.2E+02 0.011 25.3 13.0 23 542-564 80-102 (112)
269 3tau_A Guanylate kinase, GMP k 31.0 14 0.00049 37.7 1.1 18 190-207 8-25 (208)
270 1ik9_A DNA repair protein XRCC 30.9 5E+02 0.017 27.5 13.4 15 460-474 133-147 (213)
271 4ag6_A VIRB4 ATPase, type IV s 30.9 12 0.0004 42.1 0.5 18 190-207 35-52 (392)
272 2og2_A Putative signal recogni 30.8 29 0.001 39.4 3.7 17 191-207 158-174 (359)
273 3s4r_A Vimentin; alpha-helix, 30.4 3.3E+02 0.011 25.2 12.1 36 519-561 56-91 (93)
274 2e7s_A RAB guanine nucleotide 30.4 1.7E+02 0.0057 29.3 8.4 32 459-490 46-77 (135)
275 1fxk_A Prefoldin; archaeal pro 30.2 3.2E+02 0.011 24.9 12.4 24 541-564 80-103 (107)
276 3tr0_A Guanylate kinase, GMP k 30.1 13 0.00045 37.0 0.6 16 192-207 9-24 (205)
277 2q6q_A Spindle POLE BODY compo 30.1 3E+02 0.01 24.6 9.1 55 509-563 7-61 (74)
278 3lfu_A DNA helicase II; SF1 he 30.0 17 0.00058 43.3 1.6 22 186-207 18-39 (647)
279 3dm5_A SRP54, signal recogniti 30.0 28 0.00095 40.8 3.4 19 190-208 100-118 (443)
280 2ykg_A Probable ATP-dependent 29.7 20 0.00069 42.9 2.2 25 181-207 21-45 (696)
281 2gza_A Type IV secretion syste 29.7 15 0.00053 41.2 1.2 19 187-207 174-192 (361)
282 3bas_A Myosin heavy chain, str 29.6 3.3E+02 0.011 24.9 11.6 37 452-488 14-50 (89)
283 3kl4_A SRP54, signal recogniti 29.3 30 0.001 40.3 3.5 18 190-207 97-114 (433)
284 2yhs_A FTSY, cell division pro 29.3 21 0.00073 42.5 2.3 17 191-207 294-310 (503)
285 2ic6_A Nucleocapsid protein; h 29.1 3E+02 0.01 25.2 9.0 30 539-568 44-73 (78)
286 3c8u_A Fructokinase; YP_612366 29.1 24 0.00081 35.9 2.3 20 188-207 20-39 (208)
287 1ic2_A Tropomyosin alpha chain 29.0 3.1E+02 0.011 24.5 10.7 25 541-565 49-73 (81)
288 4fi5_A Nucleoprotein; structur 28.7 2.7E+02 0.0092 27.0 9.1 32 539-570 61-92 (113)
289 1deb_A APC protein, adenomatou 28.7 2.6E+02 0.0087 23.6 7.8 33 456-488 7-39 (54)
290 1t6f_A Geminin; coiled-coil, c 28.5 67 0.0023 25.3 4.1 26 447-472 9-34 (37)
291 4etp_A Kinesin-like protein KA 28.0 1.5E+02 0.0051 34.2 8.9 45 516-560 14-58 (403)
292 1rz3_A Hypothetical protein rb 27.9 23 0.0008 35.8 2.0 29 179-207 8-39 (201)
293 1wp9_A ATP-dependent RNA helic 27.9 21 0.00072 39.4 1.8 24 181-207 17-40 (494)
294 4gkp_A Spindle POLE BODY-assoc 27.7 2.2E+02 0.0074 31.5 9.6 252 114-432 12-271 (275)
295 1ypw_A Transitional endoplasmi 27.7 23 0.00079 44.2 2.3 51 157-207 199-255 (806)
296 2px0_A Flagellar biosynthesis 27.3 18 0.00062 39.7 1.1 17 191-207 106-122 (296)
297 1kgd_A CASK, peripheral plasma 27.2 16 0.00053 36.5 0.6 16 192-207 7-22 (180)
298 2dr3_A UPF0273 protein PH0284; 27.2 20 0.0007 36.5 1.4 26 182-207 12-40 (247)
299 3a00_A Guanylate kinase, GMP k 26.9 15 0.00053 36.6 0.5 16 192-207 3-18 (186)
300 2gk6_A Regulator of nonsense t 26.8 23 0.0008 42.7 2.0 26 181-208 188-213 (624)
301 3efg_A Protein SLYX homolog; x 26.8 1.7E+02 0.0059 26.4 7.2 47 519-565 14-60 (78)
302 1wt6_A Myotonin-protein kinase 26.6 3.8E+02 0.013 24.6 9.9 25 541-565 46-70 (81)
303 1ly1_A Polynucleotide kinase; 26.4 18 0.00061 35.0 0.8 17 191-207 3-19 (181)
304 1zp6_A Hypothetical protein AT 26.3 16 0.00055 36.1 0.4 17 191-207 10-26 (191)
305 2i1j_A Moesin; FERM, coiled-co 26.2 61 0.0021 39.1 5.5 35 157-191 76-116 (575)
306 2efr_A General control protein 26.0 5.3E+02 0.018 26.2 20.5 9 468-476 44-52 (155)
307 1rj9_A FTSY, signal recognitio 25.9 19 0.00065 39.8 1.0 17 191-207 103-119 (304)
308 1r6b_X CLPA protein; AAA+, N-t 25.8 24 0.00083 43.2 2.0 29 180-208 197-225 (758)
309 3u06_A Protein claret segregat 25.6 1.5E+02 0.0051 34.4 8.4 11 754-764 171-181 (412)
310 2qag_C Septin-7; cell cycle, c 25.6 17 0.00059 42.1 0.6 23 185-207 26-48 (418)
311 2ic9_A Nucleocapsid protein; h 25.5 3.5E+02 0.012 25.6 9.1 31 539-569 44-74 (96)
312 3trf_A Shikimate kinase, SK; a 25.4 19 0.00065 35.4 0.8 16 192-207 7-22 (185)
313 4a4z_A Antiviral helicase SKI2 25.4 28 0.00097 44.6 2.6 73 1033-1121 918-991 (997)
314 2l5g_B Putative uncharacterize 25.4 97 0.0033 25.2 4.6 37 57-93 3-39 (42)
315 3ghg_B Fibrinogen beta chain; 25.3 8.4E+02 0.029 28.8 14.4 24 541-564 164-187 (461)
316 1ci6_A Transcription factor AT 25.2 2.4E+02 0.0082 24.3 7.6 9 523-531 27-35 (63)
317 4gkw_A Spindle assembly abnorm 25.1 5.2E+02 0.018 25.7 17.7 17 459-475 60-76 (167)
318 1lvg_A Guanylate kinase, GMP k 25.0 17 0.00058 37.0 0.4 16 192-207 6-21 (198)
319 1lkx_A Myosin IE heavy chain; 24.8 33 0.0011 42.4 2.9 21 187-207 91-111 (697)
320 2j41_A Guanylate kinase; GMP, 24.6 19 0.00065 35.8 0.6 16 192-207 8-23 (207)
321 1oyw_A RECQ helicase, ATP-depe 24.5 16 0.00056 43.0 0.1 26 180-207 32-57 (523)
322 2d7d_A Uvrabc system protein B 24.3 40 0.0014 41.1 3.5 48 158-209 4-51 (661)
323 1qhx_A CPT, protein (chloramph 24.3 21 0.00071 34.8 0.8 17 191-207 4-20 (178)
324 4a2q_A RIG-I, retinoic acid in 24.3 29 0.001 42.8 2.3 26 180-207 255-280 (797)
325 2w83_C C-JUN-amino-terminal ki 24.2 1.7E+02 0.0057 26.7 6.5 26 449-474 34-59 (77)
326 2qnr_A Septin-2, protein NEDD5 24.1 18 0.00062 39.6 0.4 23 185-207 13-35 (301)
327 1x79_B RAB GTPase binding effe 24.0 5E+02 0.017 25.1 12.8 15 459-473 13-27 (112)
328 3lnc_A Guanylate kinase, GMP k 24.0 23 0.0008 36.4 1.2 16 192-207 29-44 (231)
329 3pxi_A Negative regulator of g 23.7 35 0.0012 42.0 2.8 41 160-207 178-218 (758)
330 2l5g_B Putative uncharacterize 23.6 1.6E+02 0.0054 24.0 5.5 28 533-560 9-36 (42)
331 2ehv_A Hypothetical protein PH 23.6 20 0.00068 36.7 0.6 18 191-208 31-48 (251)
332 3sop_A Neuronal-specific septi 23.6 20 0.00067 38.8 0.5 19 189-207 1-19 (270)
333 1gm5_A RECG; helicase, replica 23.5 27 0.00093 43.6 1.8 39 166-207 368-406 (780)
334 1w9i_A Myosin II heavy chain; 23.4 37 0.0013 42.5 2.9 21 187-207 169-189 (770)
335 3he5_B Synzip2; heterodimeric 23.4 2.6E+02 0.009 22.8 6.8 43 507-563 5-47 (52)
336 2q6q_A Spindle POLE BODY compo 23.4 4E+02 0.014 23.8 9.2 31 449-479 7-37 (74)
337 3iij_A Coilin-interacting nucl 23.4 21 0.00071 35.1 0.6 17 191-207 12-28 (180)
338 2v26_A Myosin VI; calmodulin-b 23.3 37 0.0013 42.6 2.9 21 187-207 137-157 (784)
339 1y1u_A Signal transducer and a 23.3 1E+03 0.034 29.0 15.1 16 601-616 152-167 (585)
340 1ye8_A Protein THEP1, hypothet 23.1 21 0.00071 36.1 0.6 15 193-207 3-17 (178)
341 2bdt_A BH3686; alpha-beta prot 23.0 21 0.00072 35.4 0.6 16 192-207 4-19 (189)
342 3uie_A Adenylyl-sulfate kinase 23.0 29 0.00099 35.0 1.6 20 188-207 23-42 (200)
343 3hhm_B NISH2 P85alpha; PI3KCA, 23.0 8.8E+02 0.03 27.6 18.9 23 454-476 135-157 (373)
344 1wle_A Seryl-tRNA synthetase; 22.8 5.5E+02 0.019 30.5 12.6 32 538-569 121-152 (501)
345 4a2w_A RIG-I, retinoic acid in 22.8 31 0.0011 43.7 2.1 31 891-922 897-928 (936)
346 1j8m_F SRP54, signal recogniti 22.7 61 0.0021 35.5 4.2 16 192-207 100-115 (297)
347 2xdj_A Uncharacterized protein 22.7 2.8E+02 0.0095 25.4 7.8 47 444-490 19-65 (83)
348 2qen_A Walker-type ATPase; unk 22.6 32 0.0011 36.8 2.0 17 191-207 32-48 (350)
349 2orw_A Thymidine kinase; TMTK, 22.6 18 0.0006 36.8 -0.1 17 192-208 5-21 (184)
350 2b8t_A Thymidine kinase; deoxy 22.5 20 0.00068 38.0 0.3 20 190-209 12-31 (223)
351 1znw_A Guanylate kinase, GMP k 22.4 22 0.00075 36.1 0.6 16 192-207 22-37 (207)
352 2oca_A DAR protein, ATP-depend 22.4 25 0.00087 40.4 1.2 34 166-208 113-146 (510)
353 2r8r_A Sensor protein; KDPD, P 22.4 21 0.00071 38.4 0.4 19 190-208 6-24 (228)
354 1t2k_D Cyclic-AMP-dependent tr 22.2 2.6E+02 0.009 23.6 7.2 10 521-530 24-33 (61)
355 1g8x_A Myosin II heavy chain f 22.2 37 0.0013 43.7 2.7 33 174-206 155-188 (1010)
356 1kk8_A Myosin heavy chain, str 22.0 38 0.0013 42.8 2.7 21 187-207 166-186 (837)
357 1lwu_C Fibrinogen gamma chain; 22.0 1.9E+02 0.0065 32.6 8.0 16 545-560 38-53 (323)
358 2ycu_A Non muscle myosin 2C, a 22.0 39 0.0013 43.4 2.9 21 187-207 143-163 (995)
359 1w7j_A Myosin VA; motor protei 21.9 41 0.0014 42.3 2.9 21 187-207 153-173 (795)
360 3m91_A Proteasome-associated A 21.8 3.1E+02 0.01 23.1 7.2 35 524-558 14-48 (51)
361 1gku_B Reverse gyrase, TOP-RG; 21.8 37 0.0013 43.7 2.6 23 181-205 64-86 (1054)
362 2pt7_A CAG-ALFA; ATPase, prote 21.8 21 0.00072 39.7 0.3 19 187-207 170-188 (330)
363 3he5_A Synzip1; heterodimeric 21.8 3.1E+02 0.01 22.2 6.8 13 549-561 33-45 (49)
364 1kht_A Adenylate kinase; phosp 21.5 27 0.00091 34.1 1.0 17 191-207 4-20 (192)
365 4db1_A Myosin-7; S1DC, cardiac 21.5 42 0.0014 42.1 2.9 21 187-207 168-188 (783)
366 1wt6_A Myotonin-protein kinase 21.5 4.8E+02 0.016 24.0 9.9 18 542-559 54-71 (81)
367 4b4t_H 26S protease regulatory 21.4 22 0.00077 41.9 0.5 49 159-207 206-260 (467)
368 1uf9_A TT1252 protein; P-loop, 21.3 29 0.00098 34.4 1.2 22 186-207 4-25 (203)
369 2v6i_A RNA helicase; membrane, 21.3 32 0.0011 39.4 1.7 16 192-207 4-19 (431)
370 3cf2_A TER ATPase, transitiona 21.3 67 0.0023 40.4 4.6 51 157-207 199-255 (806)
371 3kta_A Chromosome segregation 21.1 23 0.0008 34.7 0.5 16 192-207 28-43 (182)
372 3vaa_A Shikimate kinase, SK; s 21.0 26 0.00091 35.2 0.9 16 192-207 27-42 (199)
373 3s9g_A Protein hexim1; cyclin 21.0 5.4E+02 0.019 24.5 9.4 49 508-563 40-88 (104)
374 2dq0_A Seryl-tRNA synthetase; 20.7 2.8E+02 0.0095 32.5 9.4 31 539-569 75-105 (455)
375 3e1s_A Exodeoxyribonuclease V, 20.5 35 0.0012 41.0 1.9 25 181-207 197-221 (574)
376 1z6g_A Guanylate kinase; struc 20.5 24 0.00081 36.5 0.4 16 192-207 25-40 (218)
377 2z83_A Helicase/nucleoside tri 20.4 36 0.0012 39.3 1.9 16 192-207 23-38 (459)
378 2wt7_A Proto-oncogene protein 20.3 3.4E+02 0.012 23.2 7.6 11 521-531 25-35 (63)
379 1odf_A YGR205W, hypothetical 3 20.3 55 0.0019 35.8 3.2 20 188-207 29-48 (290)
380 4anj_A Unconventional myosin-V 20.2 45 0.0016 43.1 2.9 34 174-207 127-161 (1052)
381 1kag_A SKI, shikimate kinase I 20.2 27 0.00091 33.9 0.6 16 192-207 6-21 (173)
382 3htk_A Structural maintenance 20.2 3.8E+02 0.013 22.3 8.7 28 536-563 29-56 (60)
383 1gd2_E Transcription factor PA 20.2 1.8E+02 0.0063 25.8 5.9 17 547-563 50-66 (70)
384 3kb2_A SPBC2 prophage-derived 20.1 28 0.00097 33.3 0.8 16 192-207 3-18 (173)
No 1
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-80 Score=710.86 Aligned_cols=367 Identities=34% Similarity=0.507 Sum_probs=292.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEEeeCCCCCC-CC--CceEE
Q 001081 60 ALSTKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLGNIKVFCRTRPLFED-EG--PSVVE 136 (1162)
Q Consensus 60 ~~~~~l~~l~~~l~~~k~~~~~lrqe~~el~e~~~~k~~~~~~~~~~L~e~~rklGnIrV~~RVRPl~~~-E~--~s~V~ 136 (1162)
++..++..|+++.+.++.++.+++.+..++.+.........+++++.+.+.. |||||||||||+.+. |. ...+.
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk---gnIrV~vRvRP~~~~~e~~~~~~~~ 83 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR---GNIRVYLRIRPALKNLENSDTSLIN 83 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CSEEEEEEECCCCTTTSCSCCTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCeEEEEEeCCCCCcccccCCCeeE
Confidence 3555555566666666656666655555554433222223344677777654 999999999999766 32 22222
Q ss_pred e--CCC----cEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCccccccC
Q 001081 137 F--TDD----CTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGS 210 (1162)
Q Consensus 137 ~--~d~----~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~Gs 210 (1162)
+ .++ ..+.+..... ....+.|.||+||+++++|++||+.|.|+|+++++|||+||||||||||||||||+|+
T Consensus 84 v~~~~~~~~~~~~~~~~~~~--~~~~~~F~FD~VF~~~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~ 161 (403)
T 4etp_A 84 VNEFDDNSGVQSMEVTKIQN--TAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP 161 (403)
T ss_dssp ECCCBTTTTBEEEEEEECSS--SCEEEEEEESEEECTTCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCT
T ss_pred EeeccCCCCceEEEEecCCC--CcCceEEEcCEEECCCCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceEeCCC
Confidence 2 111 2344433221 1234789999999999999999999999999999999999999999999999999996
Q ss_pred CCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCCC--------ceEEeecc---cccceeeee
Q 001081 211 SHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNG--------LAKIRLQS---LESSIELVQ 279 (1162)
Q Consensus 211 ~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~--------~~~i~~~~---~~~v~~Lt~ 279 (1162)
++|||||++++||+.+.......+.|.|+|||+|||||+|+|||.+.... ...++.+. ...+.++++
T Consensus 162 --~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~ 239 (403)
T 4etp_A 162 --GDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTS 239 (403)
T ss_dssp --TTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC--------CCSCCCCEEEETTTTEEEETTCCC
T ss_pred --CCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCccccccccccCcceeeEEeCCCCCEEecCcEE
Confidence 46999999999999988656667899999999999999999999876421 12233222 235678999
Q ss_pred eecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEecCCCcccccCCCcchhHHH
Q 001081 280 EKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITD 355 (1162)
Q Consensus 280 ~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~tg~~~~SKL~LVDLAGSER~~ks~a~G~RlkE 355 (1162)
+.|.+++++..+|..|..+|.++.|. |||||+||+|+|.+.+...+....|+|+|||||||||+.++++.|.|++|
T Consensus 240 ~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E 319 (403)
T 4etp_A 240 VKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRE 319 (403)
T ss_dssp EECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCCCCCSSCCHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecCCCCeeEEEEEEEECCCCccccccCChhHHHHH
Confidence 99999999999999999999999886 89999999999999988888888999999999999999999999999999
Q ss_pred HHHHhHhhHHHHHHHHhhcCCC---CcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHHhHHHHHhhhccc
Q 001081 356 VLHVMKSLSALGDVLSSLTSRK---DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 432 (1162)
Q Consensus 356 a~~INkSLsaLg~VIsALs~k~---~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~eETLsTLrFAsRAr~I~~ 432 (1162)
+.+||+||++||+||.+|+++. .||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|+++|.+
T Consensus 320 ~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~ 399 (403)
T 4etp_A 320 TQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 399 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC--
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999998755 4999999999999999999999999999999999999999999999999999875
Q ss_pred c
Q 001081 433 S 433 (1162)
Q Consensus 433 ~ 433 (1162)
.
T Consensus 400 ~ 400 (403)
T 4etp_A 400 V 400 (403)
T ss_dssp -
T ss_pred C
Confidence 4
No 2
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=1.8e-80 Score=713.28 Aligned_cols=369 Identities=31% Similarity=0.459 Sum_probs=301.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEEeeCCCCCCCC---Cce
Q 001081 58 KQALSTKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLGNIKVFCRTRPLFEDEG---PSV 134 (1162)
Q Consensus 58 ~~~~~~~l~~l~~~l~~~k~~~~~lrqe~~el~e~~~~k~~~~~~~~~~L~e~~rklGnIrV~~RVRPl~~~E~---~s~ 134 (1162)
...|..++..++++++.++..+.+++.+..++.+.........+++++.+.+.. |||||||||||+++.|. .++
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~---gnIrV~vRvRP~~~~E~~~~~~~ 81 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR---DNIRVFCRIRPPLESEENRMCCT 81 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSEEEEEEECCCCGGGTTSCBCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCEEEEEEcCCCCchhccCcceE
Confidence 356777777777777777777777777777765543222223344777777654 99999999999987763 234
Q ss_pred EEeCCCcEEEEecCCCcc--CCCCceeeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCccccccCCC
Q 001081 135 VEFTDDCTIRVNTGDDTI--SNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSH 212 (1162)
Q Consensus 135 V~~~d~~tI~v~~~~~~~--~~~~k~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~Gs~~ 212 (1162)
+.++++.+|.+....... ....+.|+||+||+++++|++||+.|.|+|+++++|||+||||||||||||||||+|+++
T Consensus 82 ~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~ 161 (412)
T 3u06_A 82 WTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPE 161 (412)
T ss_dssp EEEEETTEEEEECCC-------CCCEEECSEEECTTCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETT
T ss_pred EEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHHHHHHHHHHHCCCceEEEEecCCCCCCeeEecCCCC
Confidence 566778888776543322 122478999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCCCceEEeec----ccccceeeeeeecCCHHHH
Q 001081 213 DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQ----SLESSIELVQEKVDNPLEF 288 (1162)
Q Consensus 213 d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~~i~~~----~~~~v~~Lt~~~V~S~~e~ 288 (1162)
++|||||++++||+.+.......+.|.|+|||+|||||+|+|||.+..... .++.. ...++.++++..|.+++++
T Consensus 162 ~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~-~i~~~~~~~~~~~v~gl~~~~v~s~~e~ 240 (412)
T 3u06_A 162 SVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDM-EIRMAKNNKNDIYVSNITEETVLDPNHL 240 (412)
T ss_dssp EECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSCCCC-CEEECSSCTTSEEETTCCCEECCSHHHH
T ss_pred CCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCCCCc-eeeeeecCCCCEEEcceEEEEeCCHHHH
Confidence 999999999999999876666678999999999999999999998765433 23321 2345678999999999999
Q ss_pred HHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEecCCCcccccCCCcchhHHHHHHHhHhhH
Q 001081 289 SKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLS 364 (1162)
Q Consensus 289 ~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~tg~~~~SKL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLs 364 (1162)
..+|..|..+|.++.|. |||||+||+|+|.+.+...+....|+|+|||||||||.. .|.|++|+.+||+||+
T Consensus 241 ~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~----~~~rl~E~~~INkSL~ 316 (412)
T 3u06_A 241 RHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLS 316 (412)
T ss_dssp HHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETTTTEEEEEEEEEEECCCCCC--------------CTTTHHHH
T ss_pred HHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCCCCCEEEEEEEEEECCCCCcCC----ccchhHhHHHHhHHHH
Confidence 99999999999998876 899999999999998888888889999999999999974 4789999999999999
Q ss_pred HHHHHHHhhcCCCCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHHhHHHHHhhhccccc
Q 001081 365 ALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSL 434 (1162)
Q Consensus 365 aLg~VIsALs~k~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~eETLsTLrFAsRAr~I~~~i 434 (1162)
+||+||.+|+.++.||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|+++|++..
T Consensus 317 aLg~vI~aL~~~~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~~ 386 (412)
T 3u06_A 317 ELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTK 386 (412)
T ss_dssp HHHHHHHHHHTTCSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHhccCCCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHHhhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998643
No 3
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=3.6e-80 Score=702.06 Aligned_cols=339 Identities=36% Similarity=0.528 Sum_probs=291.9
Q ss_pred CCCEEEEEeeCCCCCCCC----CceEEeCCCcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHhhHHHHHHHhcCC
Q 001081 114 LGNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGY 189 (1162)
Q Consensus 114 lGnIrV~~RVRPl~~~E~----~s~V~~~d~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~V~PLV~svLdGy 189 (1162)
.|||+|||||||+++.|. ..++...+..+|...... ...+.|.||+||+++++|++||+.+.|+|+++++||
T Consensus 4 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~v~~~~~~----~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~lv~~~l~G~ 79 (369)
T 3cob_A 4 KGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKD----DKAKQHMYDRVFDGNATQDDVFEDTKYLVQSAVDGY 79 (369)
T ss_dssp CCBCEEEEEECCCCHHHHHTTCCBCEEECSSSEEEEECTT----SCEEEEECSEEECTTCCHHHHHHTTTHHHHHHHTTC
T ss_pred CCCeEEEEECCCCChhhccCCCcEEEEcCCcEEEEecCCC----CCceEEecCEEECCCCCcceehhhhhhhhHhhhcCC
Confidence 389999999999987552 223344455566554322 234899999999999999999999999999999999
Q ss_pred ceeEeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCC--CceEEe
Q 001081 190 NVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN--GLAKIR 267 (1162)
Q Consensus 190 N~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~--~~~~i~ 267 (1162)
|+||||||||||||||||+|++.++|||||++++||+.+.... ..+.|.|+|||+|||||+|+|||.+... ....++
T Consensus 80 n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~ 158 (369)
T 3cob_A 80 NVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDS-NKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIK 158 (369)
T ss_dssp EEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTT-TTEEEEEEEEEEEECSSCEEESSCCSSSCCCCCEEE
T ss_pred ceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhc-cCceeEEEEEEEEEeCceeeecCCCcccCCcceEEE
Confidence 9999999999999999999999999999999999999887543 3478999999999999999999987643 233444
Q ss_pred ecc--cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEecCCCc
Q 001081 268 LQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSE 341 (1162)
Q Consensus 268 ~~~--~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~tg~~~~SKL~LVDLAGSE 341 (1162)
.+. ...+.+++++.|.+++++..+|..|..+|+++.|. |||||+||+|+|.+.+..++....|+|+||||||||
T Consensus 159 e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSE 238 (369)
T 3cob_A 159 KDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSE 238 (369)
T ss_dssp ECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCSS
T ss_pred ECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCCCcEEEEEEEEEeCCCCC
Confidence 433 34567999999999999999999999999998875 899999999999999888888889999999999999
Q ss_pred ccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCCCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHHh
Q 001081 342 GLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSL 421 (1162)
Q Consensus 342 R~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~eETLsTL 421 (1162)
|..++++.|.+++|+.+||+||++||+||.+|+.++.||||||||||+||+|+||||++|+||+||||+..+++||++||
T Consensus 239 r~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl~TL 318 (369)
T 3cob_A 239 RVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSL 318 (369)
T ss_dssp CCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHH
T ss_pred cccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccccCcchhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 422 NFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQAL 475 (1162)
Q Consensus 422 rFAsRAr~I~~~i~n~~~ikk~k~i~~~~~~el~~l~~eI~eLk~Ei~~Lr~~L 475 (1162)
+||+||++|++.+..+... ++|.+|++++..++++.
T Consensus 319 rfA~rak~i~~~~~~n~~~------------------~ei~~L~~~l~~~~~~~ 354 (369)
T 3cob_A 319 TYASRVRSIVNDPSKNVSS------------------KEVARLKKLVSYWKEQA 354 (369)
T ss_dssp HHHHHHHTCBCCCCCCEEC------------------HHHHHHHHHTTCC----
T ss_pred HHHHHHhhcccCCcccCCH------------------HHHHHHHHHHHHHHHhc
Confidence 9999999998765432211 56677777777666554
No 4
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.9e-79 Score=686.19 Aligned_cols=311 Identities=39% Similarity=0.596 Sum_probs=268.9
Q ss_pred CCEEEEEeeCCCCCCCCC-----ceEEe--CCCcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHhhHHHHHHHhc
Q 001081 115 GNIKVFCRTRPLFEDEGP-----SVVEF--TDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALD 187 (1162)
Q Consensus 115 GnIrV~~RVRPl~~~E~~-----s~V~~--~d~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~V~PLV~svLd 187 (1162)
|||+|||||||+++.|.. .++.+ .++..+.+...+ ..+.|.||+||+++++|++||+.|.|+|+++++
T Consensus 4 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~~~l~ 78 (330)
T 2h58_A 4 GNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKG-----KPVSFELDKVFSPQASQQDVFQEVQALVTSCID 78 (330)
T ss_dssp -CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEETT-----EEEEEECSEEECTTCCHHHHHTTTHHHHHHHHT
T ss_pred CCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCCC-----CeeEEecCeEeCCCCCcHhHHHHHHHHHHHHhC
Confidence 899999999999877632 33444 344455544322 247899999999999999999999999999999
Q ss_pred CCceeEeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCCCceEEe
Q 001081 188 GYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIR 267 (1162)
Q Consensus 188 GyN~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~~i~ 267 (1162)
|||+||||||||||||||||+|+++++|||||++++||+.++.. ...+.|.|+|||+|||||+|+|||.+.+.....++
T Consensus 79 G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~-~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~ 157 (330)
T 2h58_A 79 GFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEK-ASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIR 157 (330)
T ss_dssp TCCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTS-CTTEEEEEEEEEEEEETTEEEETTSCSSCCCCCCE
T ss_pred CCEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcc-cCCceEEEEEEEEEEECCChhhcccccccccceEE
Confidence 99999999999999999999999999999999999999998743 35678999999999999999999987654444444
Q ss_pred e--c--ccccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEecCC
Q 001081 268 L--Q--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAG 339 (1162)
Q Consensus 268 ~--~--~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~tg~~~~SKL~LVDLAG 339 (1162)
. + ....+.+++++.|.++++++.+|..|.++|+++.|. |||||+||+|+|.+.+...+....|+|+||||||
T Consensus 158 ~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAG 237 (330)
T 2h58_A 158 LCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAG 237 (330)
T ss_dssp ECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTTTEEEEEEEEEEECCC
T ss_pred EeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCCCcEEEEEEEEEeCCC
Confidence 3 2 223566999999999999999999999999988775 8999999999999988777778899999999999
Q ss_pred CcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCCCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHH
Q 001081 340 SEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLS 419 (1162)
Q Consensus 340 SER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~eETLs 419 (1162)
|||..++++.|.|++|+.+||+||++||+||.+|+.++.||||||||||+||||+||||++|+||+||||+..+++||++
T Consensus 238 SEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~ETl~ 317 (330)
T 2h58_A 238 SERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLY 317 (330)
T ss_dssp CCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHH
T ss_pred CCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHhhhcc
Q 001081 420 SLNFSSRARSTV 431 (1162)
Q Consensus 420 TLrFAsRAr~I~ 431 (1162)
||+||+||++|+
T Consensus 318 TL~fA~rak~i~ 329 (330)
T 2h58_A 318 SLKFAERVRSVE 329 (330)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHhhCc
Confidence 999999999875
No 5
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=8.9e-79 Score=686.82 Aligned_cols=316 Identities=36% Similarity=0.549 Sum_probs=258.0
Q ss_pred CCCEEEEEeeCCCCCCCCCc----eEEeCC----CcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHhhHHHHHHH
Q 001081 114 LGNIKVFCRTRPLFEDEGPS----VVEFTD----DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSA 185 (1162)
Q Consensus 114 lGnIrV~~RVRPl~~~E~~s----~V~~~d----~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~V~PLV~sv 185 (1162)
.|||||||||||+++.|... ++...+ ...+.+..+... ...+.|.||+||+++++|++||++|.|+|+++
T Consensus 4 kgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~f~FD~Vf~~~~~Q~~vf~~v~~lv~~~ 81 (349)
T 3t0q_A 4 RGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGR--ILSYNFQFDMIFEPSHTNKEIFEEIRQLVQSS 81 (349)
T ss_dssp -CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC----CEEEEEEESEEECTTCCHHHHHHHHHHHHHGG
T ss_pred CCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCCc--ccceeeecCEEECCCccHHHHHHHHHHHHHHH
Confidence 39999999999998887432 232222 234555443221 22478999999999999999999999999999
Q ss_pred hcCCceeEeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCC----
Q 001081 186 LDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN---- 261 (1162)
Q Consensus 186 LdGyN~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~---- 261 (1162)
++|||+||||||||||||||||+|+ ++|||||++++||+.+.......+.|.|+|||+|||||+|+|||.+...
T Consensus 82 l~G~n~tifAYGqTGSGKTyTm~g~--~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~ 159 (349)
T 3t0q_A 82 LDGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNI 159 (349)
T ss_dssp GTTCEEEEEEECSTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC--------
T ss_pred HCCcceeEEEeCCCCCCCceEeCCC--CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhcccccccccccc
Confidence 9999999999999999999999996 4699999999999988866666789999999999999999999987531
Q ss_pred ------CceEEeecc---cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccCCcee
Q 001081 262 ------GLAKIRLQS---LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENL 328 (1162)
Q Consensus 262 ------~~~~i~~~~---~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~tg~~~ 328 (1162)
....++.+. ...+.+++++.|.+++++..+|..|..+|.++.|+ |||||+||+|+|.+.+..++...
T Consensus 160 ~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~ 239 (349)
T 3t0q_A 160 DEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETS 239 (349)
T ss_dssp -------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETTTCCEE
T ss_pred ccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCCCCee
Confidence 122233222 34567899999999999999999999999988775 89999999999999998888888
Q ss_pred eeeeeEEecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCC---CcccCCCCccccccccccCCCcceEEEE
Q 001081 329 YSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK---DIVPYENSMLTKVLADSLGESSKTLMIV 405 (1162)
Q Consensus 329 ~SKL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~---~hVPYRdSKLTrLLqDSLGGNSkTvMIa 405 (1162)
.|+|+|||||||||+.+++++|+|++|+.+||+||++||+||.+|++++ .||||||||||+||||+||||++|+||+
T Consensus 240 ~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mi~ 319 (349)
T 3t0q_A 240 QGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFV 319 (349)
T ss_dssp EEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEEEEEE
T ss_pred EEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceEEEEE
Confidence 9999999999999999999999999999999999999999999998765 4999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHhHHHHHhhhcccc
Q 001081 406 NICPNAANMSETLSSLNFSSRARSTVLS 433 (1162)
Q Consensus 406 ~ISPs~~n~eETLsTLrFAsRAr~I~~~ 433 (1162)
||||+..+++||++||+||+|+++|++.
T Consensus 320 ~vsP~~~~~~ETl~TL~fA~rv~~ik~~ 347 (349)
T 3t0q_A 320 NIPPDPNHISETLNSLRFASKVNSTKIA 347 (349)
T ss_dssp EECCCGGGHHHHHHHHHHHHHHHC----
T ss_pred EeCCchhhHHHHHHHHHHHHHhhhcccC
Confidence 9999999999999999999999998753
No 6
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.3e-78 Score=690.72 Aligned_cols=317 Identities=38% Similarity=0.566 Sum_probs=250.9
Q ss_pred CCCEEEEEeeCCCCCCCCCc---eEEe--------CCCcEEEEecCCCc--------cCCCCceeeeceeeCCCCChHHH
Q 001081 114 LGNIKVFCRTRPLFEDEGPS---VVEF--------TDDCTIRVNTGDDT--------ISNPKKDFEFDRVYGPHVGQAEL 174 (1162)
Q Consensus 114 lGnIrV~~RVRPl~~~E~~s---~V~~--------~d~~tI~v~~~~~~--------~~~~~k~F~FDkVF~~~asQeeV 174 (1162)
.|||||||||||+++.|... ++.+ .++++|.+..++.. .....+.|+||+||+++++|++|
T Consensus 21 ~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~V 100 (376)
T 2rep_A 21 KGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGSGQDEV 100 (376)
T ss_dssp --CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEEECTTCCHHHH
T ss_pred CCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCcccchhh
Confidence 39999999999999887432 2222 34566776543211 01234789999999999999999
Q ss_pred HHhhHHHHHHHhcCCceeEeeeccCCCCCccccccCCC----CCChHHHHHHHHHHhhccccccccccceeEEEEEEecc
Q 001081 175 FSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSH----DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNE 250 (1162)
Q Consensus 175 Fe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~Gs~~----d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE 250 (1162)
|+.|.|+|+++++|||+||||||||||||||||+|++. ++|||||++++||+.+......++.|.|+|||+|||||
T Consensus 101 y~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE 180 (376)
T 2rep_A 101 FEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNE 180 (376)
T ss_dssp HHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEEEETT
T ss_pred hhhHHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEEEEEEECC
Confidence 99999999999999999999999999999999999753 68999999999999987666667899999999999999
Q ss_pred hhccccCCCCC----CceEEeec----ccccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEE
Q 001081 251 QLRELLPQTGN----GLAKIRLQ----SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIY 318 (1162)
Q Consensus 251 ~V~DLL~~~~~----~~~~i~~~----~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~ 318 (1162)
+|+|||.+... ....++.. ....+.+++++.|.+++++..+|..|.++|.++.|. |||||+||+|+|.
T Consensus 181 ~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~ 260 (376)
T 2rep_A 181 TVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQIS 260 (376)
T ss_dssp EEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSEEEEEEEEE
T ss_pred EeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEE
Confidence 99999987521 12234433 234566899999999999999999999999888764 9999999999999
Q ss_pred EeeccCCceeeeeeeEEecCCCcccccCCCcc----hhHHHHHHHhHhhHHHHHHHHhhcCCCCcccCCCCccccccccc
Q 001081 319 YNNLITGENLYSKLSLVDLAGSEGLIAEDDSG----ERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADS 394 (1162)
Q Consensus 319 ~~n~~tg~~~~SKL~LVDLAGSER~~ks~a~G----~RlkEa~~INkSLsaLg~VIsALs~k~~hVPYRdSKLTrLLqDS 394 (1162)
+.+...+....|+|+|||||||||+.++++.| +|++|+.+||+||++||+||.+|++++.||||||||||+||||+
T Consensus 261 ~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLT~LLqds 340 (376)
T 2rep_A 261 GEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVPYRNSKLTYLLQNS 340 (376)
T ss_dssp EEESSSCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGG
T ss_pred EEecCCCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCCCccCCcCCHHHHHHHHh
Confidence 98877777788999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEEEeCCCCCCHHHHHHHhHHHHHhhhc
Q 001081 395 LGESSKTLMIVNICPNAANMSETLSSLNFSSRARST 430 (1162)
Q Consensus 395 LGGNSkTvMIa~ISPs~~n~eETLsTLrFAsRAr~I 430 (1162)
||||++|+||+||||+..+++||++||+||+|++++
T Consensus 341 LgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 341 LGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp TSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred hCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999763
No 7
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=9.6e-79 Score=680.71 Aligned_cols=306 Identities=36% Similarity=0.562 Sum_probs=275.7
Q ss_pred CCCEEEEEeeCCCCCCC----CCceEEeCCCcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHhh-HHHHHHHhcC
Q 001081 114 LGNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDG 188 (1162)
Q Consensus 114 lGnIrV~~RVRPl~~~E----~~s~V~~~d~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~V-~PLV~svLdG 188 (1162)
.+||+|||||||+++.| ...++.++++.++.+. .+.|.||+||+++++|++||+.+ .|+|+++++|
T Consensus 6 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~---------~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G 76 (325)
T 1bg2_A 6 ECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA---------SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEG 76 (325)
T ss_dssp SCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEET---------TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTT
T ss_pred CCCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEEC---------CEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCC
Confidence 48999999999998766 2345666777777653 27899999999999999999985 9999999999
Q ss_pred CceeEeeeccCCCCCccccccCCC---CCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCCCceE
Q 001081 189 YNVSIFAYGQTHSGKTHTMEGSSH---DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAK 265 (1162)
Q Consensus 189 yN~~IFAYGQTGSGKTyTM~Gs~~---d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~~ 265 (1162)
||+||||||||||||||||+|+.. ++|||||++++||+.+... ..+.+|.|+|||+|||||+|+|||++..... .
T Consensus 77 ~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~l-~ 154 (325)
T 1bg2_A 77 YNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSM-DENLEFHIKVSYFEIYLDKIRDLLDVSKTNL-S 154 (325)
T ss_dssp CCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHH-CSSEEEEEEEEEEEEETTEEEESSCTTCCSB-C
T ss_pred CeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhc-cCCceEEEEEEEEEEecCeeeecccCCCCCc-e
Confidence 999999999999999999999754 4699999999999988643 3467899999999999999999998765543 3
Q ss_pred Eeecc--cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEecCC
Q 001081 266 IRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAG 339 (1162)
Q Consensus 266 i~~~~--~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~tg~~~~SKL~LVDLAG 339 (1162)
++.+. ...+.++++..|.++++++++|..|..+|+++.|. |||||+||+|+|.+.+...+....|+|+||||||
T Consensus 155 i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skl~lVDLAG 234 (325)
T 1bg2_A 155 VHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAG 234 (325)
T ss_dssp EEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCC
T ss_pred EEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCCCcEEEEEEEEEECCC
Confidence 33332 23566899999999999999999999999999886 8999999999999988777777889999999999
Q ss_pred CcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCCCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHH
Q 001081 340 SEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLS 419 (1162)
Q Consensus 340 SER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~eETLs 419 (1162)
|||..++++.|.+++|+.+||+||++||+||.+|++++.||||||||||+||||+||||++|+||+||||+..+++||++
T Consensus 235 SEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ETl~ 314 (325)
T 1bg2_A 235 SEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKS 314 (325)
T ss_dssp SCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHHHH
T ss_pred CCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHhhhc
Q 001081 420 SLNFSSRARST 430 (1162)
Q Consensus 420 TLrFAsRAr~I 430 (1162)
||+||+|||+|
T Consensus 315 TL~fa~rak~I 325 (325)
T 1bg2_A 315 TLLFGQRAKTI 325 (325)
T ss_dssp HHHHHHTSCCC
T ss_pred HHHHHHHhccC
Confidence 99999999875
No 8
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=1.2e-78 Score=685.51 Aligned_cols=318 Identities=33% Similarity=0.514 Sum_probs=255.0
Q ss_pred CCEEEEEeeCCCCCCCC----CceEEe-CCCcEEEEecCCCc-----cCCCCceeeeceeeCCCCChHHHHHh-hHHHHH
Q 001081 115 GNIKVFCRTRPLFEDEG----PSVVEF-TDDCTIRVNTGDDT-----ISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQ 183 (1162)
Q Consensus 115 GnIrV~~RVRPl~~~E~----~s~V~~-~d~~tI~v~~~~~~-----~~~~~k~F~FDkVF~~~asQeeVFe~-V~PLV~ 183 (1162)
+||+|||||||+++.|. ..++.+ +++.+|.+.++... .....+.|.||+||+++++|++||+. +.|+|+
T Consensus 4 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~ 83 (350)
T 2vvg_A 4 DNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLID 83 (350)
T ss_dssp CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHHH
T ss_pred CCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHHH
Confidence 79999999999987652 345555 34567777665321 12345899999999999999999998 599999
Q ss_pred HHhcCCceeEeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCCCc
Q 001081 184 SALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGL 263 (1162)
Q Consensus 184 svLdGyN~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~ 263 (1162)
++++|||+||||||||||||||||+|+++++|||||++++||+.+.. ......|.|+|||+|||||+|+|||.+.. .
T Consensus 84 ~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~-~~~~~~~~v~vS~~EIYnE~i~DLL~~~~--~ 160 (350)
T 2vvg_A 84 AVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINS-SSSNQNFLVIGSYLELYNEEIRDLIKNNT--K 160 (350)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHT-CCTTEEEEEEEEEEEEETTEEEETTTTEE--E
T ss_pred HHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHh-hccCCcEEEEEEEEEEeCCEEEEcccCCc--C
Confidence 99999999999999999999999999999999999999999998874 33567899999999999999999998432 2
Q ss_pred eEEeec--ccccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccCCc--eeeeeeeEE
Q 001081 264 AKIRLQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGE--NLYSKLSLV 335 (1162)
Q Consensus 264 ~~i~~~--~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~tg~--~~~SKL~LV 335 (1162)
..++.+ ....+.+++++.|.+++++..+|..|..+|+++.|. |||||+||+|+|.+.+...+. ...|+|+||
T Consensus 161 l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~skl~lV 240 (350)
T 2vvg_A 161 LPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLV 240 (350)
T ss_dssp ECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----CEEEEEEEEEE
T ss_pred ceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCccEEEEEEEEE
Confidence 233332 234566899999999999999999999999988875 999999999999987755443 467999999
Q ss_pred ecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCCCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHH
Q 001081 336 DLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMS 415 (1162)
Q Consensus 336 DLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~e 415 (1162)
|||||||..++++.|.+++|+.+||+||++||+||.+|.+++.||||||||||+||||+||||++|+||+||||+..+++
T Consensus 241 DLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ 320 (350)
T 2vvg_A 241 DLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYD 320 (350)
T ss_dssp ECCCCCC---------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHH
T ss_pred eCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccccHHHHHHHHhcCCCccEEEEEEeCCccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHhhhcccccC
Q 001081 416 ETLSSLNFSSRARSTVLSLG 435 (1162)
Q Consensus 416 ETLsTLrFAsRAr~I~~~i~ 435 (1162)
||++||+||+||++|++.+.
T Consensus 321 ETl~TL~fA~rak~i~n~~~ 340 (350)
T 2vvg_A 321 ETMSTLRYADRAKQIKNKPR 340 (350)
T ss_dssp HHHHHHHHHHHHTTCBCCCC
T ss_pred HHHHHHHHHHHHhhccccce
Confidence 99999999999999987654
No 9
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=1.6e-78 Score=687.93 Aligned_cols=311 Identities=33% Similarity=0.544 Sum_probs=260.2
Q ss_pred CCCEEEEEeeCCCCCCCC----CceEEeCC---CcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHhh-HHHHHHH
Q 001081 114 LGNIKVFCRTRPLFEDEG----PSVVEFTD---DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSA 185 (1162)
Q Consensus 114 lGnIrV~~RVRPl~~~E~----~s~V~~~d---~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~V-~PLV~sv 185 (1162)
.+||+|||||||+++.|. ..++.+++ +.+|.+. .+.|.||+||+++++|++||+.+ .|+|+++
T Consensus 10 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~~---------~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 80 (365)
T 2y65_A 10 EDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIA---------GKVYLFDKVFKPNASQEKVYNEAAKSIVTDV 80 (365)
T ss_dssp EEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEET---------TEEEECSEEECTTCCHHHHHHHHTHHHHHHH
T ss_pred CCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEEC---------CEEEeCceEecCCCCHHHHHHHhhhhHHHHH
Confidence 489999999999987652 34555554 3444432 37899999999999999999985 8999999
Q ss_pred hcCCceeEeeeccCCCCCccccccCC---CCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCCC
Q 001081 186 LDGYNVSIFAYGQTHSGKTHTMEGSS---HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNG 262 (1162)
Q Consensus 186 LdGyN~~IFAYGQTGSGKTyTM~Gs~---~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~ 262 (1162)
++|||+||||||||||||||||+|+. .++|||||++++||+.+... ..++.|.|+|||+|||||+|+|||++....
T Consensus 81 l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 159 (365)
T 2y65_A 81 LAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAM-EVNLEFHIKVSYYEIYMDKIRDLLDVSKVN 159 (365)
T ss_dssp HTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHC-CSCEEEEEEEEEEEEETTEEEETTCTTCCS
T ss_pred hCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhc-cCCceEEEEEEEEEEECCeeeecccCCcCC
Confidence 99999999999999999999999964 45799999999999988643 356789999999999999999999876544
Q ss_pred ceEEeecc--cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEe
Q 001081 263 LAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVD 336 (1162)
Q Consensus 263 ~~~i~~~~--~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~tg~~~~SKL~LVD 336 (1162)
. .++.+. ...+.++++..|.++++++.+|..|..+|+++.|. |||||+||+|+|.+.+...+....|+|+|||
T Consensus 160 l-~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVD 238 (365)
T 2y65_A 160 L-SVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVD 238 (365)
T ss_dssp B-CEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTTCCEEEEEEEEEE
T ss_pred c-eEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCCCCEeEEEEEEEE
Confidence 3 333332 33567899999999999999999999999999886 8999999999999988877778899999999
Q ss_pred cCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCC-CCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHH
Q 001081 337 LAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR-KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMS 415 (1162)
Q Consensus 337 LAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k-~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~e 415 (1162)
||||||+.++++.|.+++|+.+||+||++||+||.+|+++ +.||||||||||+||||+||||++|+||+||||+..+++
T Consensus 239 LAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ 318 (365)
T 2y65_A 239 LAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNES 318 (365)
T ss_dssp CCCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGGHH
T ss_pred CCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCCHH
Confidence 9999999999999999999999999999999999999986 589999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHhhhcccccC
Q 001081 416 ETLSSLNFSSRARSTVLSLG 435 (1162)
Q Consensus 416 ETLsTLrFAsRAr~I~~~i~ 435 (1162)
||++||+||+||++|++.+.
T Consensus 319 ETl~TL~fA~rak~I~n~~~ 338 (365)
T 2y65_A 319 ETKSTLDFGRRAKTVKNVVC 338 (365)
T ss_dssp HHHHHHHHHHHHTTCEEECC
T ss_pred HHHHHHHHHHHHhcccCcce
Confidence 99999999999999987554
No 10
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=3.1e-78 Score=681.86 Aligned_cols=315 Identities=36% Similarity=0.559 Sum_probs=263.2
Q ss_pred CCEEEEEeeCCCCC-CC--CCceEEeC--C----CcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHhhHHHHHHH
Q 001081 115 GNIKVFCRTRPLFE-DE--GPSVVEFT--D----DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSA 185 (1162)
Q Consensus 115 GnIrV~~RVRPl~~-~E--~~s~V~~~--d----~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~V~PLV~sv 185 (1162)
|||||||||||+++ .| ...++.+. + ..++.+..+.. ....+.|.||+||+++++|++||+.|.|+|+++
T Consensus 3 ~nIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~~~ 80 (347)
T 1f9v_A 3 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQN--TAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSS 80 (347)
T ss_dssp CEEEEEEEECCCCTTTCCCTTEEEEECCCBTTTTBEEEEEEEGGG--TTCEEEEEESEEECTTCCHHHHHHHHHHHHGGG
T ss_pred CCeEEEEEeCCCCcccccCCCceEEEecccCCCCceEEEEecCCC--CcCceEEeeCEEECCCCCHHHHHHHHHHHHHHh
Confidence 89999999999987 34 22333332 1 13455543321 123488999999999999999999999999999
Q ss_pred hcCCceeEeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCCC---
Q 001081 186 LDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNG--- 262 (1162)
Q Consensus 186 LdGyN~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~--- 262 (1162)
++|||+||||||||||||||||+|+ ++|||||++++||+.+.......+.|.|+|||+|||||+|+|||.+....
T Consensus 81 l~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~ 158 (347)
T 1f9v_A 81 LDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKED 158 (347)
T ss_dssp GGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC--------
T ss_pred cCCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCccccccc
Confidence 9999999999999999999999995 57999999999999987655667899999999999999999999876432
Q ss_pred -----ceEEeec---ccccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccCCceeee
Q 001081 263 -----LAKIRLQ---SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYS 330 (1162)
Q Consensus 263 -----~~~i~~~---~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~tg~~~~S 330 (1162)
...++.+ ....+.++++..|.+++++..+|..|..+|.++.|. |||||+||+|+|.+.+..++....|
T Consensus 159 ~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~s 238 (347)
T 1f9v_A 159 TSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYG 238 (347)
T ss_dssp -----CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC--CCEEEE
T ss_pred cccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCCCCceeee
Confidence 1223322 224566899999999999999999999999988764 8999999999999988777888899
Q ss_pred eeeEEecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCC---CcccCCCCccccccccccCCCcceEEEEEe
Q 001081 331 KLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK---DIVPYENSMLTKVLADSLGESSKTLMIVNI 407 (1162)
Q Consensus 331 KL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~---~hVPYRdSKLTrLLqDSLGGNSkTvMIa~I 407 (1162)
+|+|||||||||+.++++.|+|++|+.+||+||++||+||.+|++++ .||||||||||+||||+||||++|+||+||
T Consensus 239 kL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~~v 318 (347)
T 1f9v_A 239 TLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNI 318 (347)
T ss_dssp EEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEEEE
T ss_pred EEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEEEEEEe
Confidence 99999999999999999999999999999999999999999999865 899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHhHHHHHhhhcccc
Q 001081 408 CPNAANMSETLSSLNFSSRARSTVLS 433 (1162)
Q Consensus 408 SPs~~n~eETLsTLrFAsRAr~I~~~ 433 (1162)
||+..+++||++||+||+||++|++.
T Consensus 319 sP~~~~~~ETl~TLrfA~r~~~i~~~ 344 (347)
T 1f9v_A 319 SPSSSHINETLNSLRFASKVNSTRLV 344 (347)
T ss_dssp CCSGGGHHHHHHHHHHHHHHCCTTTC
T ss_pred CCccccHHHHHHHHHHHHHHhhhccC
Confidence 99999999999999999999998754
No 11
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=3.3e-78 Score=683.47 Aligned_cols=314 Identities=30% Similarity=0.467 Sum_probs=247.4
Q ss_pred CCCEEEEEeeCCCCCCC----CCceEEeCCCcEEEEecCCCcc----------------CCCCceeeeceeeCCCCChHH
Q 001081 114 LGNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTI----------------SNPKKDFEFDRVYGPHVGQAE 173 (1162)
Q Consensus 114 lGnIrV~~RVRPl~~~E----~~s~V~~~d~~tI~v~~~~~~~----------------~~~~k~F~FDkVF~~~asQee 173 (1162)
.|||||||||||++..| ...+|.+.++.++.+.+..... ..+...|.||+||+++++|++
T Consensus 9 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~ 88 (355)
T 3lre_A 9 CHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQSE 88 (355)
T ss_dssp ---CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTCCHHH
T ss_pred cCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCCChHH
Confidence 49999999999998765 2456777777766655432210 123468999999999999999
Q ss_pred HHHhh-HHHHHHHhcCCceeEeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchh
Q 001081 174 LFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQL 252 (1162)
Q Consensus 174 VFe~V-~PLV~svLdGyN~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V 252 (1162)
||+.+ .|+|+++++|||+||||||||||||||||+|++.++||+||++++||+.+.... ....|.|.|||+|||||+|
T Consensus 89 Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~-~~~~~~v~vS~~EIYnE~i 167 (355)
T 3lre_A 89 VFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIK-EEKICSTAVSYLEVYNEQI 167 (355)
T ss_dssp HHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTT-TTEEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhc-cCceEEEEEEEEEEECCEE
Confidence 99985 899999999999999999999999999999999999999999999999887533 3467999999999999999
Q ss_pred ccccCCCCCCceEEeec--ccccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccC--
Q 001081 253 RELLPQTGNGLAKIRLQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT-- 324 (1162)
Q Consensus 253 ~DLL~~~~~~~~~i~~~--~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~t-- 324 (1162)
+|||.+... ..++.+ ....+.+++++.|.++++++.+|..|.++|+++.|. |||||+||+|++.+.+...
T Consensus 168 ~DLL~~~~~--l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~ 245 (355)
T 3lre_A 168 RDLLVNSGP--LAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASI 245 (355)
T ss_dssp EESSSCCCC--BEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTSCT
T ss_pred EECcCCCCC--ceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCCCC
Confidence 999987543 344443 334567999999999999999999999999988775 9999999999999876532
Q ss_pred -CceeeeeeeEEecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCC---CCcccCCCCccccccccccCCCcc
Q 001081 325 -GENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR---KDIVPYENSMLTKVLADSLGESSK 400 (1162)
Q Consensus 325 -g~~~~SKL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k---~~hVPYRdSKLTrLLqDSLGGNSk 400 (1162)
.....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+++ ..||||||||||+||||+|||||+
T Consensus 246 ~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGnsk 325 (355)
T 3lre_A 246 NQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQ 325 (355)
T ss_dssp TCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSSTTSE
T ss_pred CCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCCce
Confidence 2346799999999999999999999999999999999999999999999874 369999999999999999999999
Q ss_pred eEEEEEeCCCCCCHHHHHHHhHHHHHhhhc
Q 001081 401 TLMIVNICPNAANMSETLSSLNFSSRARST 430 (1162)
Q Consensus 401 TvMIa~ISPs~~n~eETLsTLrFAsRAr~I 430 (1162)
|+||+||||+..+++||++||+||+|||+|
T Consensus 326 t~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 326 TIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp EEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999875
No 12
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=7.7e-78 Score=682.85 Aligned_cols=318 Identities=31% Similarity=0.498 Sum_probs=263.9
Q ss_pred CCEEEEEeeCCCCCCC----CCceEEeCCCcEEEEecCCCccCCCCceeeeceeeCCC--------CChHHHHHhh-HHH
Q 001081 115 GNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPH--------VGQAELFSDV-QPF 181 (1162)
Q Consensus 115 GnIrV~~RVRPl~~~E----~~s~V~~~d~~tI~v~~~~~~~~~~~k~F~FDkVF~~~--------asQeeVFe~V-~PL 181 (1162)
++|+|||||||+++.| ..+++.+.++.+ .+..+.. .....+.|+||+||+++ ++|++||+.+ .|+
T Consensus 4 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~-~i~~~~~-~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~pl 81 (366)
T 2zfi_A 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTT-TIVNPKQ-PKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEM 81 (366)
T ss_dssp CCEEEEEEECCCCHHHHHTTCCBCEEEETTEE-EECCTTC-TTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHH
T ss_pred CCcEEEEECCCCChhhccCCCCeEEEECCCcE-EEeccCC-CCCCceEEecceEeecCccccccccCcHHHHHHHHHHHH
Confidence 7899999999998765 234566655544 4433322 12345899999999987 8999999986 899
Q ss_pred HHHHhcCCceeEeeeccCCCCCccccccCC--CCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCC
Q 001081 182 VQSALDGYNVSIFAYGQTHSGKTHTMEGSS--HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQT 259 (1162)
Q Consensus 182 V~svLdGyN~~IFAYGQTGSGKTyTM~Gs~--~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~ 259 (1162)
|+++++|||+||||||||||||||||+|+. .++|||||++++||+.+.........|.|+|||+|||||+|+|||.+.
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~ 161 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPK 161 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTT
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEccccc
Confidence 999999999999999999999999999984 578999999999999998766667899999999999999999999987
Q ss_pred CCCceEEeecc--cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccCC----ceee
Q 001081 260 GNGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITG----ENLY 329 (1162)
Q Consensus 260 ~~~~~~i~~~~--~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~tg----~~~~ 329 (1162)
......++.+. ...+.++++..|.++++++.+|..|.++|.++.|. |||||+||+|+|.+...... ....
T Consensus 162 ~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~ 241 (366)
T 2zfi_A 162 NKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKV 241 (366)
T ss_dssp TCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEEEE
T ss_pred cCCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCccceeE
Confidence 65555555443 34566899999999999999999999999998875 89999999999988654322 2357
Q ss_pred eeeeEEecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcC------------CCCcccCCCCccccccccccCC
Q 001081 330 SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS------------RKDIVPYENSMLTKVLADSLGE 397 (1162)
Q Consensus 330 SKL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~------------k~~hVPYRdSKLTrLLqDSLGG 397 (1162)
|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|++ +..||||||||||+||||+|||
T Consensus 242 skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsLgG 321 (366)
T 2zfi_A 242 SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGG 321 (366)
T ss_dssp EEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSST
T ss_pred eEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999986 3579999999999999999999
Q ss_pred CcceEEEEEeCCCCCCHHHHHHHhHHHHHhhhccccc
Q 001081 398 SSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSL 434 (1162)
Q Consensus 398 NSkTvMIa~ISPs~~n~eETLsTLrFAsRAr~I~~~i 434 (1162)
|++|+||+||||+..+++||++||+||+||++|++.+
T Consensus 322 nskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~ 358 (366)
T 2zfi_A 322 NSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTV 358 (366)
T ss_dssp TCEEEEEEEECCBGGGHHHHHHHHHHHHHTC------
T ss_pred CceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999999987644
No 13
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=9.7e-78 Score=682.51 Aligned_cols=320 Identities=32% Similarity=0.491 Sum_probs=268.9
Q ss_pred CCCEEEEEeeCCCCCCCC----CceEEe-CCCcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHhh-HHHHHHHhc
Q 001081 114 LGNIKVFCRTRPLFEDEG----PSVVEF-TDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALD 187 (1162)
Q Consensus 114 lGnIrV~~RVRPl~~~E~----~s~V~~-~d~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~V-~PLV~svLd 187 (1162)
.++|||||||||+++.|. ..++.+ ++..+|.+..+........+.|+||+||+++++|++||+.+ .|+|+++++
T Consensus 20 ~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~ 99 (372)
T 3b6u_A 20 SESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDSVLQ 99 (372)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHHHHHhC
Confidence 489999999999987652 345554 45677888766543344568999999999999999999985 999999999
Q ss_pred CCceeEeeeccCCCCCccccccCC---CCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCCCce
Q 001081 188 GYNVSIFAYGQTHSGKTHTMEGSS---HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLA 264 (1162)
Q Consensus 188 GyN~~IFAYGQTGSGKTyTM~Gs~---~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~ 264 (1162)
|||+||||||||||||||||+|.. .++|||||++++||+.+.. ...+.|.|+|||+|||||+|+|||.+......
T Consensus 100 G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~--~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l 177 (372)
T 3b6u_A 100 GFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISR--SQNQQYLVRASYLEIYQEEIRDLLSKDQTKRL 177 (372)
T ss_dssp TCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHT--CSSCEEEEEEEEEEEETTEEEETTSSCTTCCB
T ss_pred CCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhh--ccCCceEEEEEEEEEeCCEEEECCCCCCCCCc
Confidence 999999999999999999999965 4579999999999998875 45678999999999999999999988765444
Q ss_pred EEeecc--cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeecc---CCceeeeeeeEE
Q 001081 265 KIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI---TGENLYSKLSLV 335 (1162)
Q Consensus 265 ~i~~~~--~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~---tg~~~~SKL~LV 335 (1162)
.++.+. ...+.+++++.|.+++++..+|..|..+|.++.|. |||||+||+|+|.+.+.. ......|+|+||
T Consensus 178 ~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~skL~lV 257 (372)
T 3b6u_A 178 ELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLV 257 (372)
T ss_dssp CEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCEEEEEEEEE
T ss_pred eEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcceEEEEEEEE
Confidence 555432 34566899999999999999999999999999886 899999999999987542 233567999999
Q ss_pred ecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCC-CcccCCCCccccccccccCCCcceEEEEEeCCCCCCH
Q 001081 336 DLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK-DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANM 414 (1162)
Q Consensus 336 DLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~-~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~ 414 (1162)
|||||||..++++.|.|++|+.+||+||++||+||.+|++++ .||||||||||+||||+||||++|+||+||||+..++
T Consensus 258 DLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~ 337 (372)
T 3b6u_A 258 DLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNV 337 (372)
T ss_dssp ECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCBGGGH
T ss_pred ECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeCCcccCH
Confidence 999999999999999999999999999999999999998865 6999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHhhhcccccC
Q 001081 415 SETLSSLNFSSRARSTVLSLG 435 (1162)
Q Consensus 415 eETLsTLrFAsRAr~I~~~i~ 435 (1162)
+||++||+||+||++|++.+.
T Consensus 338 ~ETlsTLrfA~rak~I~n~~~ 358 (372)
T 3b6u_A 338 EETLTTLRYANRAKNIKNKPR 358 (372)
T ss_dssp HHHHHHHHHHHHHTTCBCCCC
T ss_pred HHHHHHHHHHHHHhhccccce
Confidence 999999999999999987654
No 14
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=9.7e-78 Score=679.50 Aligned_cols=315 Identities=35% Similarity=0.514 Sum_probs=280.8
Q ss_pred CCCEEEEEeeCCCCCCC----CCceEEeCCCcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHh-hHHHHHHHhcC
Q 001081 114 LGNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALDG 188 (1162)
Q Consensus 114 lGnIrV~~RVRPl~~~E----~~s~V~~~d~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~-V~PLV~svLdG 188 (1162)
.++|+|||||||+++.| ...+|.+.++.++.+.... ..+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 5 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~-----~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G 79 (355)
T 1goj_A 5 ANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKE-----AQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNG 79 (355)
T ss_dssp SCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECSTT-----CCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTT
T ss_pred CCCeEEEEECCCCChHHhhcCCceEEEEcCCCeEEEccCC-----CccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCC
Confidence 48999999999998654 3467778777777665432 34799999999999999999997 59999999999
Q ss_pred CceeEeeeccCCCCCccccccC----CCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCCCce
Q 001081 189 YNVSIFAYGQTHSGKTHTMEGS----SHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLA 264 (1162)
Q Consensus 189 yN~~IFAYGQTGSGKTyTM~Gs----~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~ 264 (1162)
||+||||||||||||||||+|+ ++++|||||++++||+.+... ....+|.|+|||+|||||+|+|||.+......
T Consensus 80 ~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~ 158 (355)
T 1goj_A 80 YNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSS-AANIEYTVRVSYMEIYMERIRDLLAPQNDNLP 158 (355)
T ss_dssp CCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTS-CTTEEEEEEEEEEEEETTEEEETTSTTCCSCC
T ss_pred CcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhc-ccCceEEEEEEEEEEECCEEEEcccCccCCce
Confidence 9999999999999999999996 466899999999999988643 35678999999999999999999998765443
Q ss_pred EEeec--ccccceeeeeeecCCHHHHHHHHHHHHhhcCCCCc----CCceeEEEEEEEEEEeeccCCceeeeeeeEEecC
Q 001081 265 KIRLQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVS----KFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLA 338 (1162)
Q Consensus 265 ~i~~~--~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t----~SSRSH~IftI~V~~~n~~tg~~~~SKL~LVDLA 338 (1162)
++.+ ....+.+++++.|.++++++.+|..|..+|+++.| .|||||+||+|+|.+.+..++....|+|+|||||
T Consensus 159 -i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLA 237 (355)
T 1goj_A 159 -VHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLA 237 (355)
T ss_dssp -EEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTTTEEEEEEEEEEECC
T ss_pred -eEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCCCceeeeEEEEEECC
Confidence 3332 23456689999999999999999999999987765 4999999999999998887787889999999999
Q ss_pred CCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCC-CCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHH
Q 001081 339 GSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR-KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSET 417 (1162)
Q Consensus 339 GSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k-~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~eET 417 (1162)
||||..++++.|.+++|+.+||+||++||+||.+|+++ ..||||||||||+||+|+||||++|+||+||||+..+++||
T Consensus 238 GSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ET 317 (355)
T 1goj_A 238 GSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAET 317 (355)
T ss_dssp CCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHH
T ss_pred CCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHHHH
Confidence 99999999999999999999999999999999999985 58999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHhhhcccccC
Q 001081 418 LSSLNFSSRARSTVLSLG 435 (1162)
Q Consensus 418 LsTLrFAsRAr~I~~~i~ 435 (1162)
++||+||+||++|++.+.
T Consensus 318 l~TL~fA~rak~I~n~~~ 335 (355)
T 1goj_A 318 LSTLRFGMRAKSIKNKAK 335 (355)
T ss_dssp HHHHHHHHHHHTCBCCCC
T ss_pred HHHHHHHHHHhhccCCce
Confidence 999999999999987654
No 15
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.2e-78 Score=689.05 Aligned_cols=319 Identities=28% Similarity=0.479 Sum_probs=245.1
Q ss_pred CCCCEEEEEeeCCCCCCCC----CceEEeCCCcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHh-hHHHHHHHhc
Q 001081 113 KLGNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALD 187 (1162)
Q Consensus 113 klGnIrV~~RVRPl~~~E~----~s~V~~~d~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~-V~PLV~svLd 187 (1162)
..++|+|||||||+++.|. ..++...+++++.+..+.. ....+.|+||+||+++++|++||+. +.|+|+++++
T Consensus 19 ~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~--~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~ 96 (388)
T 3bfn_A 19 PPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRN--HQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLE 96 (388)
T ss_dssp CCCCCEEEEEECCCC-------------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHHHTT
T ss_pred CCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCCC--CCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHhhc
Confidence 4599999999999998763 2355555666666543321 1234789999999999999999997 5999999999
Q ss_pred CCceeEeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhccc--cccccccceeEEEEEEecchhccccCCCCCCceE
Q 001081 188 GYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSD--TTATARFNFAVTVFELYNEQLRELLPQTGNGLAK 265 (1162)
Q Consensus 188 GyN~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~~--~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~~ 265 (1162)
|||+||||||||||||||||+|+++++|||||++++||+.+... ....+.|.|+|||+|||||+|+|||.+..... .
T Consensus 97 G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~l-~ 175 (388)
T 3bfn_A 97 GQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDL-V 175 (388)
T ss_dssp TCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSSCBC-C
T ss_pred CceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCCCCc-e
Confidence 99999999999999999999999999999999999999988643 23457899999999999999999998865443 3
Q ss_pred Eeec--ccccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccCC-ceeeeeeeEEecC
Q 001081 266 IRLQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITG-ENLYSKLSLVDLA 338 (1162)
Q Consensus 266 i~~~--~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~tg-~~~~SKL~LVDLA 338 (1162)
++.+ ....+.++++..|.+++++..+|..|..+|.++.|. |||||+||+|+|.+.+...+ ....|+|+|||||
T Consensus 176 ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~skL~lVDLA 255 (388)
T 3bfn_A 176 IREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDLA 255 (388)
T ss_dssp CEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTTCCEEEEEEEEEECC
T ss_pred EEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCCCceeEEEEEEEECC
Confidence 3333 234567899999999999999999999999988775 89999999999998765433 4578999999999
Q ss_pred CCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCCCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHH
Q 001081 339 GSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETL 418 (1162)
Q Consensus 339 GSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~eETL 418 (1162)
||||..++++.|.|++|+.+||+||++||+||.+|.+++.||||||||||+||||+||||++|+||+||||+..+++||+
T Consensus 256 GSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~~~ETl 335 (388)
T 3bfn_A 256 GSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTV 335 (388)
T ss_dssp CTTC--------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGGHHHHH
T ss_pred CCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCCCCCcCcccHHHHHHHHhhCCCccEEEEEEECCccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHhhhccccc
Q 001081 419 SSLNFSSRARSTVLSL 434 (1162)
Q Consensus 419 sTLrFAsRAr~I~~~i 434 (1162)
+||+||+||++|++.+
T Consensus 336 sTLrfA~rak~I~n~p 351 (388)
T 3bfn_A 336 SALNFAARSKEVINRP 351 (388)
T ss_dssp HHHHHHCSEEEEC---
T ss_pred HHHHHHHHHhhCcCcC
Confidence 9999999999987654
No 16
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-77 Score=679.12 Aligned_cols=314 Identities=29% Similarity=0.376 Sum_probs=250.9
Q ss_pred CCCEEEEEeeCCCCCCCCCceEEeCCCcEEEEecCCCcc------CCCCceeeeceeeCCCCChHHHHHhh-HHHHHHHh
Q 001081 114 LGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTI------SNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSAL 186 (1162)
Q Consensus 114 lGnIrV~~RVRPl~~~E~~s~V~~~d~~tI~v~~~~~~~------~~~~k~F~FDkVF~~~asQeeVFe~V-~PLV~svL 186 (1162)
.|||||||||||+.+.|...+...++..+|.+..+.... ....+.|.||+||+ +++|++||+.+ .|+|++++
T Consensus 23 ~~~i~V~vRvRP~~~~e~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~plv~~~l 101 (359)
T 3nwn_A 23 RKKVHAFVRVKPTDDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDVVSQAL 101 (359)
T ss_dssp -CCEEEEEEECCCSSCCTTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHHHHHHH
T ss_pred CCCEEEEEEcCCCCcccccceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHHHHHHHh
Confidence 489999999999988776655555677788887664321 12346899999997 58999999986 89999999
Q ss_pred cCCceeEeeeccCCCCCccccccCCC---CCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCCC-
Q 001081 187 DGYNVSIFAYGQTHSGKTHTMEGSSH---DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNG- 262 (1162)
Q Consensus 187 dGyN~~IFAYGQTGSGKTyTM~Gs~~---d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~- 262 (1162)
+|||+||||||||||||||||+|+.. ++|||||++++||+.+... ....|.|+|||+|||||+|+|||++....
T Consensus 102 ~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~--~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 179 (359)
T 3nwn_A 102 DGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEER--PTHAITVRVSYLEIYNESLFDLLSTLPYVG 179 (359)
T ss_dssp TTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTC--TTSCEEEEEEEEEEETTEEEETTSSSTTSC
T ss_pred CCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcC--CCCcEEEEEEEEEEeccccccccccccccc
Confidence 99999999999999999999999764 4899999999999988643 46789999999999999999999864321
Q ss_pred ----ceEEeec-ccccceeeeeeecCCHHHHHHHHHHHHhhcCCCCc----CCceeEEEEEEEEEEeecc--CCceeeee
Q 001081 263 ----LAKIRLQ-SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVS----KFNVSHLIIMIHIYYNNLI--TGENLYSK 331 (1162)
Q Consensus 263 ----~~~i~~~-~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t----~SSRSH~IftI~V~~~n~~--tg~~~~SK 331 (1162)
...++.+ ....+.+++++.|.+++++..++..|..+|.++.| .|||||+||+|+|...... .+....|+
T Consensus 180 ~~~~~~~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~~~~sk 259 (359)
T 3nwn_A 180 PSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYITSK 259 (359)
T ss_dssp TTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------CCEEEE
T ss_pred cccccceEEecCCceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeecccccCccccccc
Confidence 1223322 33456789999999999999999999999988765 4999999999999876543 33456799
Q ss_pred eeEEecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcC-CCCcccCCCCccccccccccCCCcceEEEEEeCCC
Q 001081 332 LSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS-RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPN 410 (1162)
Q Consensus 332 L~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~-k~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs 410 (1162)
|+|||||||||+.++++.|++++|+.+||+||++||+||.+|++ ++.||||||||||+||||+|||||+|+|||||||+
T Consensus 260 L~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt~mI~~isP~ 339 (359)
T 3nwn_A 260 INLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGE 339 (359)
T ss_dssp EEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEEEECCS
T ss_pred ceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccEEEEEEeCCc
Confidence 99999999999999999999999999999999999999999987 45799999999999999999999999999999999
Q ss_pred CCCHHHHHHHhHHHHHhhhc
Q 001081 411 AANMSETLSSLNFSSRARST 430 (1162)
Q Consensus 411 ~~n~eETLsTLrFAsRAr~I 430 (1162)
..+++||++||+||+|||+|
T Consensus 340 ~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 340 AAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp GGGHHHHHHHHHHHTTGGGC
T ss_pred hhhHHHHHHHHHHHHHHcCC
Confidence 99999999999999999975
No 17
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=1e-77 Score=683.16 Aligned_cols=318 Identities=33% Similarity=0.505 Sum_probs=260.7
Q ss_pred CCCCEEEEEeeCCCCCCC----CCceEEeCCCcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHh-hHHHHHHHhc
Q 001081 113 KLGNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALD 187 (1162)
Q Consensus 113 klGnIrV~~RVRPl~~~E----~~s~V~~~d~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~-V~PLV~svLd 187 (1162)
..+||+|||||||++..| ...++.+.++..+.+..... ....+.|+||+||+++++|++||+. +.|+|+++++
T Consensus 21 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~ 98 (373)
T 2wbe_C 21 SNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLD--SKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLN 98 (373)
T ss_dssp CCEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSS--STTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCC--CCCceEEeccEEeccccchhHHHHHHHHHHHHHHhC
Confidence 358999999999998765 24577777777777754432 2335899999999999999999998 5999999999
Q ss_pred CCceeEeeeccCCCCCccccccCCC-----------CCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhcccc
Q 001081 188 GYNVSIFAYGQTHSGKTHTMEGSSH-----------DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL 256 (1162)
Q Consensus 188 GyN~~IFAYGQTGSGKTyTM~Gs~~-----------d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL 256 (1162)
|||+||||||||||||||||+|+.. ++|||||++++||+.+... ..+|.|+|||+|||||+|+|||
T Consensus 99 G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~---~~~~~v~vS~~EIYnE~i~DLL 175 (373)
T 2wbe_C 99 GYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMM---EVEYTMRISYLELYNEELCDLL 175 (373)
T ss_dssp TCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHC---CSCEEEEEEEEEEETTEEEESS
T ss_pred CceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhc---CceEEEEEEEEEEeCCeEEECC
Confidence 9999999999999999999999754 6899999999999988642 4689999999999999999999
Q ss_pred CCCCCCceEEeec----ccccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeecc-CC--
Q 001081 257 PQTGNGLAKIRLQ----SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI-TG-- 325 (1162)
Q Consensus 257 ~~~~~~~~~i~~~----~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~-tg-- 325 (1162)
.+.......+..+ ....+.+++++.|.++++++.+|..|..+|+++.|. |||||+||+|+|...... .+
T Consensus 176 ~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~ 255 (373)
T 2wbe_C 176 STDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGED 255 (373)
T ss_dssp CTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTTTCC
T ss_pred CCCCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCCCCc
Confidence 8765544444333 123566899999999999999999999999999886 899999999999876432 22
Q ss_pred ceeeeeeeEEecCCCcccccCCCc-chhHHHHHHHhHhhHHHHHHHHhhcCCCCcccCCCCccccccccccCCCcceEEE
Q 001081 326 ENLYSKLSLVDLAGSEGLIAEDDS-GERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMI 404 (1162)
Q Consensus 326 ~~~~SKL~LVDLAGSER~~ks~a~-G~RlkEa~~INkSLsaLg~VIsALs~k~~hVPYRdSKLTrLLqDSLGGNSkTvMI 404 (1162)
....|+|+|||||||||+.++++. |.|++|+.+||+||++||+||.+|.++..||||||||||+||||+||||++|+||
T Consensus 256 ~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI 335 (373)
T 2wbe_C 256 MLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQESLGGRTKTSII 335 (373)
T ss_dssp EEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCSSCCCGGGCHHHHHTHHHHHSSSEEEEE
T ss_pred ceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCCCcCccccchHHHHHHHHhCCCceEEEE
Confidence 235799999999999999999987 9999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHhHHHHHhhhcccccC
Q 001081 405 VNICPNAANMSETLSSLNFSSRARSTVLSLG 435 (1162)
Q Consensus 405 a~ISPs~~n~eETLsTLrFAsRAr~I~~~i~ 435 (1162)
+||||+..+++||++||+||+||++|++.+.
T Consensus 336 a~isP~~~~~~ETlsTLrfA~rak~I~n~p~ 366 (373)
T 2wbe_C 336 ATISPGHKDIEETLSTLEYAHRAKNIQNKPE 366 (373)
T ss_dssp EEECCBGGGHHHHHHHHHHHHHHHTCEECCC
T ss_pred EEeCCCcccHHHHHHHHHHHHHHhhccccce
Confidence 9999999999999999999999999987654
No 18
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=4.9e-78 Score=682.96 Aligned_cols=319 Identities=33% Similarity=0.482 Sum_probs=257.6
Q ss_pred CCCCEEEEEeeCCCCCCC----CCceEEeC-CCcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHhh-HHHHHHHh
Q 001081 113 KLGNIKVFCRTRPLFEDE----GPSVVEFT-DDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSAL 186 (1162)
Q Consensus 113 klGnIrV~~RVRPl~~~E----~~s~V~~~-d~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~V-~PLV~svL 186 (1162)
+.+||+|||||||++..| ...++.+. +..+|.+..++.......+.|+||+||+++++|++||+.+ .|+|++++
T Consensus 6 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l 85 (359)
T 1x88_A 6 KGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVI 85 (359)
T ss_dssp ---CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHHh
Confidence 459999999999998655 23455553 4456666543211122347999999999999999999985 89999999
Q ss_pred cCCceeEeeeccCCCCCccccccCCC-----------CCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccc
Q 001081 187 DGYNVSIFAYGQTHSGKTHTMEGSSH-----------DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLREL 255 (1162)
Q Consensus 187 dGyN~~IFAYGQTGSGKTyTM~Gs~~-----------d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DL 255 (1162)
+|||+||||||||||||||||+|+.. .+|||||++++||+.+.. ...+|.|+|||+|||||+|+||
T Consensus 86 ~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~---~~~~~~v~vS~~EIYnE~i~DL 162 (359)
T 1x88_A 86 MGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD---NGTEFSVKVSLLEIYNEELFDL 162 (359)
T ss_dssp TTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS---SSEEEEEEEEEEEEETTEEEET
T ss_pred CCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc---cCceEEEEEEEEEEeCceeeeh
Confidence 99999999999999999999999754 369999999999998864 4578999999999999999999
Q ss_pred cCCCCCC--ceEEeecc----cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeec-cC
Q 001081 256 LPQTGNG--LAKIRLQS----LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNL-IT 324 (1162)
Q Consensus 256 L~~~~~~--~~~i~~~~----~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~-~t 324 (1162)
|.+.... ...++.+. ...+.+++++.|.++++++.+|..|..+|+++.|. |||||+||+|+|...+. ..
T Consensus 163 L~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~ 242 (359)
T 1x88_A 163 LNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 242 (359)
T ss_dssp TCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTT
T ss_pred hcccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccCC
Confidence 9886542 23343332 34567899999999999999999999999887654 89999999999987653 22
Q ss_pred Cc--eeeeeeeEEecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCCCcccCCCCccccccccccCCCcceE
Q 001081 325 GE--NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTL 402 (1162)
Q Consensus 325 g~--~~~SKL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~~hVPYRdSKLTrLLqDSLGGNSkTv 402 (1162)
+. ...|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|..+..||||||||||+||||+||||++|+
T Consensus 243 ~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~ 322 (359)
T 1x88_A 243 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTS 322 (359)
T ss_dssp SCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGSSSSSEEE
T ss_pred CCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHhCCCCeEE
Confidence 32 3579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHhHHHHHhhhccccc
Q 001081 403 MIVNICPNAANMSETLSSLNFSSRARSTVLSL 434 (1162)
Q Consensus 403 MIa~ISPs~~n~eETLsTLrFAsRAr~I~~~i 434 (1162)
||+||||+..+++||++||+||+||++|++.+
T Consensus 323 mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p 354 (359)
T 1x88_A 323 IIATISPASLNLEETLSTLEYAHRAKNILNKP 354 (359)
T ss_dssp EEEEECCCGGGHHHHHHHHHHHHHHTTCCCCC
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHhhccCcc
Confidence 99999999999999999999999999998654
No 19
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.3e-76 Score=668.87 Aligned_cols=311 Identities=32% Similarity=0.445 Sum_probs=262.9
Q ss_pred CCCEEEEEeeCCCCCCCCC----ceEEe-CCCcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHhh-HHHHHHHhc
Q 001081 114 LGNIKVFCRTRPLFEDEGP----SVVEF-TDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALD 187 (1162)
Q Consensus 114 lGnIrV~~RVRPl~~~E~~----s~V~~-~d~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~V-~PLV~svLd 187 (1162)
.|+|+|||||||+++.|.. .++.+ .++.+|... ...+.|.||+||+++++|++||+.+ .|+|+++++
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~-------~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~ 75 (349)
T 1t5c_A 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQV-------DGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQ 75 (349)
T ss_dssp CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEET-------TSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHT
T ss_pred CCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEEC-------CCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence 4899999999999987742 22222 233333321 2247899999999999999999986 899999999
Q ss_pred CCceeEeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCC-CceEE
Q 001081 188 GYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-GLAKI 266 (1162)
Q Consensus 188 GyN~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~-~~~~i 266 (1162)
|||+||||||||||||||||+|+++++|||||++++||+.+... +...|.|+|||+|||||+|+|||.+... ....+
T Consensus 76 G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~--~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i 153 (349)
T 1t5c_A 76 GYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKF--PDREFLLRVSYMEIYNETITDLLCGTQKMKPLII 153 (349)
T ss_dssp TCCEEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGC--TTEEEEEEEEEEEEETTEEEESSSSSCTTCCEEE
T ss_pred CCccceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhC--cCCcEEEEEEEEEEeCCEEEEccCCCCCCCCceE
Confidence 99999999999999999999999999999999999999988753 4578999999999999999999987643 23445
Q ss_pred eecc--cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccC-----CceeeeeeeEE
Q 001081 267 RLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT-----GENLYSKLSLV 335 (1162)
Q Consensus 267 ~~~~--~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~t-----g~~~~SKL~LV 335 (1162)
+.+. ...+.++++..|.++++++.+|..|.++|.++.|. |||||+||+|+|.+.+... +....|+|+||
T Consensus 154 ~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lV 233 (349)
T 1t5c_A 154 REDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLV 233 (349)
T ss_dssp EETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEE
T ss_pred EECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEE
Confidence 5443 34566899999999999999999999999988875 8999999999999876432 34567999999
Q ss_pred ecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCC--CcccCCCCccccccccccCCCcceEEEEEeCCCCCC
Q 001081 336 DLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK--DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAAN 413 (1162)
Q Consensus 336 DLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~--~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n 413 (1162)
|||||||..++++.|.|++|+.+||+||++||+||.+|++++ .||||||||||+||||+||||++|+||+||||. +
T Consensus 234 DLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~ 311 (349)
T 1t5c_A 234 DLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--S 311 (349)
T ss_dssp ECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--C
T ss_pred ECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--C
Confidence 999999999999999999999999999999999999998764 699999999999999999999999999999996 6
Q ss_pred HHHHHHHhHHHHHhhhcccccC
Q 001081 414 MSETLSSLNFSSRARSTVLSLG 435 (1162)
Q Consensus 414 ~eETLsTLrFAsRAr~I~~~i~ 435 (1162)
++||++||+||+||++|++.+.
T Consensus 312 ~~ETlsTL~fA~rak~I~n~~~ 333 (349)
T 1t5c_A 312 FDETLTALQFASTAKYMKNTPY 333 (349)
T ss_dssp SHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHHHHhhcccCce
Confidence 9999999999999999987654
No 20
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=8.9e-77 Score=671.56 Aligned_cols=314 Identities=33% Similarity=0.499 Sum_probs=253.0
Q ss_pred CCEEEEEeeCCCCCCCC----CceEEeCCCcEEEEecCCCc-----cCCCCceeeeceee--------CCCCChHHHHHh
Q 001081 115 GNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDDT-----ISNPKKDFEFDRVY--------GPHVGQAELFSD 177 (1162)
Q Consensus 115 GnIrV~~RVRPl~~~E~----~s~V~~~d~~tI~v~~~~~~-----~~~~~k~F~FDkVF--------~~~asQeeVFe~ 177 (1162)
.||+|+|||||+++.|. .+++.+++ ..+.+.++... .....+.|.||+|| ++.++|++||+.
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~~-~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~ 79 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDA-NKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKC 79 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEEET-TEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHH
T ss_pred CCcEEEEECCCCChhhhccCCceEEEeCC-CeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHH
Confidence 47999999999987762 34555544 44555443211 22345899999999 456889999998
Q ss_pred h-HHHHHHHhcCCceeEeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhcccc
Q 001081 178 V-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL 256 (1162)
Q Consensus 178 V-~PLV~svLdGyN~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL 256 (1162)
+ .|+|+++++|||+||||||||||||||||+|+.+++|||||++++||+.+.........|.|+|||+|||||+|+|||
T Consensus 80 ~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL 159 (354)
T 3gbj_A 80 LGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLL 159 (354)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETT
T ss_pred hhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEcc
Confidence 6 899999999999999999999999999999999999999999999999887666667889999999999999999999
Q ss_pred CCCCC-CceEEeec--ccccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeecc----CC
Q 001081 257 PQTGN-GLAKIRLQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI----TG 325 (1162)
Q Consensus 257 ~~~~~-~~~~i~~~--~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~----tg 325 (1162)
++.+. ....++.+ ....+.++++..|.+++++..+|..|..+|.++.|. |||||+||+|+|.+.... ..
T Consensus 160 ~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~ 239 (354)
T 3gbj_A 160 DPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTS 239 (354)
T ss_dssp C------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSCEE
T ss_pred CCCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCCCC
Confidence 87643 22233322 234577999999999999999999999999988775 999999999999876321 22
Q ss_pred ceeeeeeeEEecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcC------CCCcccCCCCccccccccccCCCc
Q 001081 326 ENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS------RKDIVPYENSMLTKVLADSLGESS 399 (1162)
Q Consensus 326 ~~~~SKL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~------k~~hVPYRdSKLTrLLqDSLGGNS 399 (1162)
....|+|+|||||||||..++++.|+|++|+.+||+||++||+||.+|++ +..||||||||||+||||+|||||
T Consensus 240 ~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGns 319 (354)
T 3gbj_A 240 GEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNS 319 (354)
T ss_dssp EEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTC
T ss_pred CeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCC
Confidence 34679999999999999999999999999999999999999999999985 457999999999999999999999
Q ss_pred ceEEEEEeCCCCCCHHHHHHHhHHHHHhhh
Q 001081 400 KTLMIVNICPNAANMSETLSSLNFSSRARS 429 (1162)
Q Consensus 400 kTvMIa~ISPs~~n~eETLsTLrFAsRAr~ 429 (1162)
+|+||+||||+..+++||++||+||.||+.
T Consensus 320 kt~mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 320 KTAMVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999975
No 21
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=9.9e-77 Score=680.52 Aligned_cols=313 Identities=29% Similarity=0.399 Sum_probs=253.8
Q ss_pred CCCEEEEEeeCCCCCCC----CCceEEeCCCcEEEEecCCCccC----CCCceeeeceeeCCCCChHHHHHhh-HHHHHH
Q 001081 114 LGNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTIS----NPKKDFEFDRVYGPHVGQAELFSDV-QPFVQS 184 (1162)
Q Consensus 114 lGnIrV~~RVRPl~~~E----~~s~V~~~d~~tI~v~~~~~~~~----~~~k~F~FDkVF~~~asQeeVFe~V-~PLV~s 184 (1162)
.++|+|||||||++..| ...+|.+++++++.+..+..... ...+.|+||+||+++++|++||+.+ .|+|++
T Consensus 70 ~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV~~ 149 (410)
T 1v8k_A 70 EHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQT 149 (410)
T ss_dssp CCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHHH
T ss_pred CCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHHHHH
Confidence 48999999999998765 24577788888877765432211 1237899999999999999999985 999999
Q ss_pred HhcCCceeEeeeccCCCCCccccccCC------CCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCC
Q 001081 185 ALDGYNVSIFAYGQTHSGKTHTMEGSS------HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQ 258 (1162)
Q Consensus 185 vLdGyN~~IFAYGQTGSGKTyTM~Gs~------~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~ 258 (1162)
+++|||+||||||||||||||||+|+. .++||+||++++||..+.......+.|.|+|||+|||||+|+|||.+
T Consensus 150 ~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~ 229 (410)
T 1v8k_A 150 IFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNK 229 (410)
T ss_dssp HHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETTTT
T ss_pred HhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEECCCC
Confidence 999999999999999999999999963 46899999999999988754445678999999999999999999986
Q ss_pred CCCCceEEeecc--cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccCCceeeeee
Q 001081 259 TGNGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKL 332 (1162)
Q Consensus 259 ~~~~~~~i~~~~--~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~tg~~~~SKL 332 (1162)
.. ...++.+. ...+.+++++.|.++++++.+|..|..+|+++.|. |||||+||+|+|.+. ....|+|
T Consensus 230 ~~--~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~-----~~~~skL 302 (410)
T 1v8k_A 230 KA--KLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK-----GRLHGKF 302 (410)
T ss_dssp TE--EEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESS-----SSEEEEE
T ss_pred CC--CceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeC-----CcceeEE
Confidence 53 23343332 34567999999999999999999999999988775 999999999999864 2467999
Q ss_pred eEEecCCCcccccCC-CcchhHHHHHHHhHhhHHHHHHHHhhcCCCCcccCCCCccccccccc-cCCCcceEEEEEeCCC
Q 001081 333 SLVDLAGSEGLIAED-DSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADS-LGESSKTLMIVNICPN 410 (1162)
Q Consensus 333 ~LVDLAGSER~~ks~-a~G~RlkEa~~INkSLsaLg~VIsALs~k~~hVPYRdSKLTrLLqDS-LGGNSkTvMIa~ISPs 410 (1162)
+|||||||||..+++ +.|.+++|+.+||+||++||+||.+|+.++.||||||||||+||||+ |||||+|+||+||||+
T Consensus 303 ~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hIPYRdSKLTrLLqdsllGgnskT~mIa~iSP~ 382 (410)
T 1v8k_A 303 SLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPG 382 (410)
T ss_dssp EEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHHTTHHHHSSSEEEEEEEEECCB
T ss_pred EEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCCCCCCcccchhHHHHhhcccCCCceEEEEEEeCCc
Confidence 999999999998876 46788999999999999999999999999999999999999999999 6999999999999999
Q ss_pred CCCHHHHHHHhHHHHHhhhcccc
Q 001081 411 AANMSETLSSLNFSSRARSTVLS 433 (1162)
Q Consensus 411 ~~n~eETLsTLrFAsRAr~I~~~ 433 (1162)
..+++||++||+||+||++|..+
T Consensus 383 ~~~~~ETlsTLrfA~rak~i~~~ 405 (410)
T 1v8k_A 383 ISSCEYTLNTLRYADRVKELSHH 405 (410)
T ss_dssp GGGHHHHHHHHHHHHHHHTTC--
T ss_pred cccHHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999998643
No 22
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=2e-76 Score=669.35 Aligned_cols=314 Identities=29% Similarity=0.378 Sum_probs=249.1
Q ss_pred CCCEEEEEeeCCCCCCCCCceEEeCCCcEEEEecCCCcc------CCCCceeeeceeeCCCCChHHHHHhh-HHHHHHHh
Q 001081 114 LGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTI------SNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSAL 186 (1162)
Q Consensus 114 lGnIrV~~RVRPl~~~E~~s~V~~~d~~tI~v~~~~~~~------~~~~k~F~FDkVF~~~asQeeVFe~V-~PLV~svL 186 (1162)
.|||||||||||+.+.+...+...+++.++.+..+.... ......|+||+||+ +++|++||+.+ .|+|++++
T Consensus 22 ~g~IrV~vRvRP~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~~~~lv~~~l 100 (358)
T 2nr8_A 22 RKKVHAFVRVKPTDDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDVVSQAL 100 (358)
T ss_dssp -CCEEEEEEECCCSSCCTTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCCccceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHHHHHHHHHHh
Confidence 499999999999976654433333566777776654321 12346899999995 89999999986 89999999
Q ss_pred cCCceeEeeeccCCCCCccccccCCCC---CChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCCC--
Q 001081 187 DGYNVSIFAYGQTHSGKTHTMEGSSHD---RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-- 261 (1162)
Q Consensus 187 dGyN~~IFAYGQTGSGKTyTM~Gs~~d---~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~-- 261 (1162)
+|||+||||||||||||||||+|+.++ +|||||++++||+.++.. ....|.|+|||+|||||+|+|||.+.+.
T Consensus 101 ~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~--~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 178 (358)
T 2nr8_A 101 DGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEER--PTHAITVRVSYLEIYNESLFDLLSTLPYVG 178 (358)
T ss_dssp TTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTC--TTSCEEEEEEEEEEETTEEEETTSSSTTSC
T ss_pred CCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhc--CCceEEEEEEEEEEeCCeeeECcCCccccC
Confidence 999999999999999999999998764 899999999999998753 4568999999999999999999987432
Q ss_pred ---CceEEee-cccccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeecc--CCceeeee
Q 001081 262 ---GLAKIRL-QSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI--TGENLYSK 331 (1162)
Q Consensus 262 ---~~~~i~~-~~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~--tg~~~~SK 331 (1162)
....++. .....+.++++..|.+.++++.+|..|.++|.++.|. |||||+||+|+|.+.+.. .+....|+
T Consensus 179 ~~~~~l~i~e~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~sk 258 (358)
T 2nr8_A 179 PSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYITSK 258 (358)
T ss_dssp TTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------CCEEEE
T ss_pred ccCCceEEEECCCceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEeccCCCCCEEEEE
Confidence 2223333 2334567899999999999999999999999887654 999999999999886532 33446799
Q ss_pred eeEEecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCC-CCcccCCCCccccccccccCCCcceEEEEEeCCC
Q 001081 332 LSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR-KDIVPYENSMLTKVLADSLGESSKTLMIVNICPN 410 (1162)
Q Consensus 332 L~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k-~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs 410 (1162)
|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+++ +.||||||||||+||||+|||||+|+||+||||+
T Consensus 259 L~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mIa~isP~ 338 (358)
T 2nr8_A 259 INLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGE 338 (358)
T ss_dssp EEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEEEECCS
T ss_pred EEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCc
Confidence 999999999999999999999999999999999999999999874 4799999999999999999999999999999999
Q ss_pred CCCHHHHHHHhHHHHHhhhc
Q 001081 411 AANMSETLSSLNFSSRARST 430 (1162)
Q Consensus 411 ~~n~eETLsTLrFAsRAr~I 430 (1162)
..+++||++||+||+|||+|
T Consensus 339 ~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 339 AAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp GGGHHHHHHHHHHHTTGGGC
T ss_pred hhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999975
No 23
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=1.6e-76 Score=674.82 Aligned_cols=312 Identities=29% Similarity=0.415 Sum_probs=251.4
Q ss_pred CCCEEEEEeeCCCCCCC----CCceEEeCCCcEEEEecCCCccC----CCCceeeeceeeCCCCChHHHHHhh-HHHHHH
Q 001081 114 LGNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTIS----NPKKDFEFDRVYGPHVGQAELFSDV-QPFVQS 184 (1162)
Q Consensus 114 lGnIrV~~RVRPl~~~E----~~s~V~~~d~~tI~v~~~~~~~~----~~~k~F~FDkVF~~~asQeeVFe~V-~PLV~s 184 (1162)
.++|+|||||||+++.| ...+|.+++++++.+..+..... ...+.|+||+||+++++|++||+.+ .|+|++
T Consensus 50 ~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv~~ 129 (387)
T 2heh_A 50 EHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQT 129 (387)
T ss_dssp CCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHHH
T ss_pred CCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHHHHH
Confidence 59999999999998765 23577778788777765432211 1236899999999999999999985 999999
Q ss_pred HhcCCceeEeeeccCCCCCccccccC------CCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCC
Q 001081 185 ALDGYNVSIFAYGQTHSGKTHTMEGS------SHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQ 258 (1162)
Q Consensus 185 vLdGyN~~IFAYGQTGSGKTyTM~Gs------~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~ 258 (1162)
+++|||+||||||||||||||||+|+ ..++||+||++++||..+.........|.|+|||+|||||+|+|||.+
T Consensus 130 ~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DLL~~ 209 (387)
T 2heh_A 130 IFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNK 209 (387)
T ss_dssp HHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEETTTT
T ss_pred HhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEECCCC
Confidence 99999999999999999999999996 346899999999999988755445678999999999999999999987
Q ss_pred CCCCceEEeecc--cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccCCceeeeee
Q 001081 259 TGNGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKL 332 (1162)
Q Consensus 259 ~~~~~~~i~~~~--~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~tg~~~~SKL 332 (1162)
... ..++.+. ...+.+++++.|.++++++.+|..|..+|.++.|. |||||+||+|+|.+. ....|+|
T Consensus 210 ~~~--l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~-----~~~~skL 282 (387)
T 2heh_A 210 KAK--LRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK-----GRMHGKF 282 (387)
T ss_dssp TEE--CEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESS-----SSEEEEE
T ss_pred Ccc--ceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEEC-----CeeeeEE
Confidence 532 3343332 34567999999999999999999999999988764 999999999999864 2467999
Q ss_pred eEEecCCCcccccCC-CcchhHHHHHHHhHhhHHHHHHHHhhcCCCCcccCCCCccccccccc-cCCCcceEEEEEeCCC
Q 001081 333 SLVDLAGSEGLIAED-DSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADS-LGESSKTLMIVNICPN 410 (1162)
Q Consensus 333 ~LVDLAGSER~~ks~-a~G~RlkEa~~INkSLsaLg~VIsALs~k~~hVPYRdSKLTrLLqDS-LGGNSkTvMIa~ISPs 410 (1162)
+|||||||||..+++ +.|.+++|+.+||+||++||+||.+|..++.||||||||||+||||+ |||||+|+||+||||+
T Consensus 283 ~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPYRdSKLTrlLqdsllGgnskT~mIa~isP~ 362 (387)
T 2heh_A 283 SLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPG 362 (387)
T ss_dssp EEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGGSSTTEEEEEEEEECCB
T ss_pred EEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCCCCCCccccHHHHHHhhhccCCCCeEEEEEEeCCc
Confidence 999999999998876 46788999999999999999999999999999999999999999999 6999999999999999
Q ss_pred CCCHHHHHHHhHHHHHhhhccc
Q 001081 411 AANMSETLSSLNFSSRARSTVL 432 (1162)
Q Consensus 411 ~~n~eETLsTLrFAsRAr~I~~ 432 (1162)
..+++||++||+||+||++|+.
T Consensus 363 ~~~~~ETlsTLrfA~rak~I~~ 384 (387)
T 2heh_A 363 ISSCEYTLNTLRYADRVKELSP 384 (387)
T ss_dssp GGGHHHHHHHHHHHHHHCC---
T ss_pred cchHHHHHHHHHHHHHhccCcC
Confidence 9999999999999999999864
No 24
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=6.1e-76 Score=680.98 Aligned_cols=320 Identities=32% Similarity=0.467 Sum_probs=254.9
Q ss_pred CCCEEEEEeeCCCCCCC----CCceEEeCC-CcEEEEecCCCc-----------cCCCCceeeeceeeCCC-------CC
Q 001081 114 LGNIKVFCRTRPLFEDE----GPSVVEFTD-DCTIRVNTGDDT-----------ISNPKKDFEFDRVYGPH-------VG 170 (1162)
Q Consensus 114 lGnIrV~~RVRPl~~~E----~~s~V~~~d-~~tI~v~~~~~~-----------~~~~~k~F~FDkVF~~~-------as 170 (1162)
.+||||||||||+++.| ..+++.+++ ...+.+..+... .....+.|+||+||+++ ++
T Consensus 37 ~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~~as 116 (443)
T 2owm_A 37 GANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHYAT 116 (443)
T ss_dssp CEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTTCCC
T ss_pred CCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCccCCC
Confidence 48999999999998755 234555543 334444333211 01135899999999864 89
Q ss_pred hHHHHHhh-HHHHHHHhcCCceeEeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhccc--cccccccceeEEEEEE
Q 001081 171 QAELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSD--TTATARFNFAVTVFEL 247 (1162)
Q Consensus 171 QeeVFe~V-~PLV~svLdGyN~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~~--~~~~~~f~V~VS~lEI 247 (1162)
|++||+.+ .|+|+++++|||+||||||||||||||||+|+++++|||||++++||+.+... ..+++.|.|+|||+||
T Consensus 117 Q~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~lEI 196 (443)
T 2owm_A 117 QEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEV 196 (443)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEEEEE
T ss_pred HHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEEEEEE
Confidence 99999986 89999999999999999999999999999999999999999999999988754 2356889999999999
Q ss_pred ecchhccccCCCCC----CceEEeec--ccccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEE
Q 001081 248 YNEQLRELLPQTGN----GLAKIRLQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHI 317 (1162)
Q Consensus 248 YNE~V~DLL~~~~~----~~~~i~~~--~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V 317 (1162)
|||+|+|||.+... ....++.+ ...++.+++++.|.++++++.+|..|..+|+++.|. |||||+||+|+|
T Consensus 197 YnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v 276 (443)
T 2owm_A 197 YNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIML 276 (443)
T ss_dssp ETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEEEEE
T ss_pred ECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEEEEE
Confidence 99999999987422 22445443 234577999999999999999999999999988775 899999999999
Q ss_pred EEeecc----CCceeeeeeeEEecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCC----------------
Q 001081 318 YYNNLI----TGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK---------------- 377 (1162)
Q Consensus 318 ~~~n~~----tg~~~~SKL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~---------------- 377 (1162)
.+.... ......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|++++
T Consensus 277 ~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g~~~ 356 (443)
T 2owm_A 277 KQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGR 356 (443)
T ss_dssp EEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC------------------
T ss_pred EEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhccccccccccccccccccc
Confidence 876431 223467999999999999999999999999999999999999999999998743
Q ss_pred ------CcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHHhHHHHHhhhcccccC
Q 001081 378 ------DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLG 435 (1162)
Q Consensus 378 ------~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~eETLsTLrFAsRAr~I~~~i~ 435 (1162)
.||||||||||+||||+||||++|+||+||||+ +++||++||+||+||++|++.+.
T Consensus 357 ~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~ 418 (443)
T 2owm_A 357 TPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAV 418 (443)
T ss_dssp -------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCC
T ss_pred ccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccce
Confidence 389999999999999999999999999999996 69999999999999999987654
No 25
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=6.1e-76 Score=662.61 Aligned_cols=306 Identities=30% Similarity=0.503 Sum_probs=247.2
Q ss_pred CCCCEEEEEeeCCCCCCC----CCceEEe-CCCcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHh-hHHHHHHHh
Q 001081 113 KLGNIKVFCRTRPLFEDE----GPSVVEF-TDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSAL 186 (1162)
Q Consensus 113 klGnIrV~~RVRPl~~~E----~~s~V~~-~d~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~-V~PLV~svL 186 (1162)
..++|+|+|||||+++.| ...++.+ ++...+.+ ...+.|.||+||+++++|++||+. +.|+|++++
T Consensus 9 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~--------~~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l 80 (344)
T 4a14_A 9 EEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTL--------GRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFF 80 (344)
T ss_dssp CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEE--------TTTEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred cccceEEEEEecccchHHHhccCeeEEEEcCCCceEEe--------cccceEEEEEEEecCcchhHHHHHHHHHHHHHHH
Confidence 358999999999998765 2334443 33334443 234789999999999999999998 599999999
Q ss_pred cCCceeEeeeccCCCCCccccccC------CCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCC
Q 001081 187 DGYNVSIFAYGQTHSGKTHTMEGS------SHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG 260 (1162)
Q Consensus 187 dGyN~~IFAYGQTGSGKTyTM~Gs------~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~ 260 (1162)
+|||+||||||||||||||||+|+ .+++|||||++++||+.+... ...+|.|+|||+|||||+|+|||.+..
T Consensus 81 ~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~--~~~~~~v~vS~~EIYnE~i~DLL~~~~ 158 (344)
T 4a14_A 81 EGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDEN--DLLDCLVHVSYLEVYKEEFRDLLEVGT 158 (344)
T ss_dssp TTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHC--TTSEEEEEEEEEEEETTEEEETTSSCC
T ss_pred hhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccc--cceeeEEEEehhhhhHHHHHHHHHhcc
Confidence 999999999999999999999997 467999999999999998753 467899999999999999999998653
Q ss_pred C-CceEEeecc--cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeecc--------CC
Q 001081 261 N-GLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI--------TG 325 (1162)
Q Consensus 261 ~-~~~~i~~~~--~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~--------tg 325 (1162)
. ....++.+. ...+.+++++.|.++++++.+|..|..+|.++.|. |||||+||+|+|.+.+.. .+
T Consensus 159 ~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~ 238 (344)
T 4a14_A 159 ASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPG 238 (344)
T ss_dssp CGGGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------
T ss_pred ccccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCcccc
Confidence 2 234444433 34567999999999999999999999999888765 899999999999987532 23
Q ss_pred ceeeeeeeEEecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCC---CCcccCCCCccccccccccCCCcceE
Q 001081 326 ENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR---KDIVPYENSMLTKVLADSLGESSKTL 402 (1162)
Q Consensus 326 ~~~~SKL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k---~~hVPYRdSKLTrLLqDSLGGNSkTv 402 (1162)
....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+++ ..||||||||||+||||+||||++|+
T Consensus 239 ~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~ 318 (344)
T 4a14_A 239 QLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTV 318 (344)
T ss_dssp CEEEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEE
T ss_pred ceeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceE
Confidence 456799999999999999999999999999999999999999999999873 46999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHhHHHHHhh
Q 001081 403 MIVNICPNAANMSETLSSLNFSSRAR 428 (1162)
Q Consensus 403 MIa~ISPs~~n~eETLsTLrFAsRAr 428 (1162)
||+||||+..+++||++||+||+|||
T Consensus 319 mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 319 MIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCccchhHHhhhhhhhhhcC
Confidence 99999999999999999999999985
No 26
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=5.5e-76 Score=666.10 Aligned_cols=315 Identities=28% Similarity=0.388 Sum_probs=266.5
Q ss_pred CEEEEEeeCCCCCCC----CCceEEeCCCcEEEEecCCCccC----CCCceeeeceeeCCCCChHHHHHh-hHHHHHHHh
Q 001081 116 NIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTIS----NPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSAL 186 (1162)
Q Consensus 116 nIrV~~RVRPl~~~E----~~s~V~~~d~~tI~v~~~~~~~~----~~~k~F~FDkVF~~~asQeeVFe~-V~PLV~svL 186 (1162)
||||||||||+++.| ...+|.+.++++|.+..+..... ...+.|.||+||+++++|++||+. +.|+|++++
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~ 80 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLY 80 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhc
Confidence 699999999998765 24577788888888865532111 123689999999999999999998 599999999
Q ss_pred c-CCceeEeeeccCCCCCccccccCC-----CCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhccccCCCC
Q 001081 187 D-GYNVSIFAYGQTHSGKTHTMEGSS-----HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG 260 (1162)
Q Consensus 187 d-GyN~~IFAYGQTGSGKTyTM~Gs~-----~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~ 260 (1162)
+ ||||||||||||||||||||+|+. +++||+||++++||..++.. .....|.|+|||+|||||+|+|||.+..
T Consensus 81 ~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~~~v~vS~~EIYnE~v~DLL~~~~ 159 (360)
T 1ry6_A 81 ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIY-DKDNTKGIFISFYEIYCGKLYDLLQKRK 159 (360)
T ss_dssp HHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHH-CSSSCEEEEEEEEEEETTEEEESCCC--
T ss_pred cCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhh-ccCCceEEEEEEEEeeCCeeEEcccCCc
Confidence 5 999999999999999999999974 67999999999999988643 2456899999999999999999998754
Q ss_pred CCceEEeecccccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEe
Q 001081 261 NGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVD 336 (1162)
Q Consensus 261 ~~~~~i~~~~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~tg~~~~SKL~LVD 336 (1162)
.............+.++++..|.+++++..++..|..+|.++.|. |||||+||+|++.+.+ .....|+|+|||
T Consensus 160 ~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~---~~~~~skL~lVD 236 (360)
T 1ry6_A 160 MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN---KNTSLGKIAFID 236 (360)
T ss_dssp ---------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT---TTEEEEEEEEEE
T ss_pred cceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc---CCcceeEEEEEE
Confidence 321111112334577999999999999999999999999877764 9999999999998754 345679999999
Q ss_pred cCCCcccccCCCcc-hhHHHHHHHhHhhHHHHHHHHhhcCCCCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHH
Q 001081 337 LAGSEGLIAEDDSG-ERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMS 415 (1162)
Q Consensus 337 LAGSER~~ks~a~G-~RlkEa~~INkSLsaLg~VIsALs~k~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~e 415 (1162)
||||||..++++.| .+++|+.+||+||++||+||.+|..++.||||||||||+||||+|||||+|+||+||||+..+++
T Consensus 237 LAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ 316 (360)
T 1ry6_A 237 LAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCE 316 (360)
T ss_dssp CCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGGHH
T ss_pred CCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCcccHH
Confidence 99999999999877 57899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHhhhccccc
Q 001081 416 ETLSSLNFSSRARSTVLSL 434 (1162)
Q Consensus 416 ETLsTLrFAsRAr~I~~~i 434 (1162)
||++||+||+||++|++.+
T Consensus 317 ETlsTLrfA~rak~i~n~~ 335 (360)
T 1ry6_A 317 QTLNTLRYSSRVKNKGNSK 335 (360)
T ss_dssp HHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHhhcccCc
Confidence 9999999999999998643
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=1.9e-75 Score=658.31 Aligned_cols=302 Identities=26% Similarity=0.449 Sum_probs=244.0
Q ss_pred CCCCEEEEEeeCCCCCCCC---CceEEeCC---CcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHHh-hHHHHHHH
Q 001081 113 KLGNIKVFCRTRPLFEDEG---PSVVEFTD---DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSA 185 (1162)
Q Consensus 113 klGnIrV~~RVRPl~~~E~---~s~V~~~d---~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe~-V~PLV~sv 185 (1162)
+.++|||+|||||+.+.+. ..++.+++ +..+.+ ..+.|.||+||+++++|++||+. +.|+|+++
T Consensus 20 ~~~~VrV~vRvRP~~~~e~~~~~~~v~~~~~~~~~~~~~---------~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~ 90 (344)
T 3dc4_A 20 KLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIV---------DQNEFHFDHAFPATISQDEMYQALILPLVDKL 90 (344)
T ss_dssp CCSEEEEEEEECCCC-------CCSEECCSSSCSSEEEE---------TTEEEECSEEECTTCCHHHHHHHHTHHHHHHH
T ss_pred CCCCeEEEEECCCCCcccccCCceEEEecCCCCCceEEe---------cCcEEEcceEECCCCCHHHHHHhhccchhhHh
Confidence 4589999999999976542 34555543 334433 23799999999999999999998 59999999
Q ss_pred hcCCceeEeeeccCCCCCccccccCC------CCCChHHHHHHHHHHhhccccc-cccccceeEEEEEEecchhccccCC
Q 001081 186 LDGYNVSIFAYGQTHSGKTHTMEGSS------HDRGLYARCFEELFDLSNSDTT-ATARFNFAVTVFELYNEQLRELLPQ 258 (1162)
Q Consensus 186 LdGyN~~IFAYGQTGSGKTyTM~Gs~------~d~GIIPRaledLF~~i~~~~~-~~~~f~V~VS~lEIYNE~V~DLL~~ 258 (1162)
++|||+||||||||||||||||+|++ +++|||||++++||+.+..... ....|.|+|||+|||||+|+|||.+
T Consensus 91 l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 170 (344)
T 3dc4_A 91 LEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGS 170 (344)
T ss_dssp HHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSS
T ss_pred hCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCC
Confidence 99999999999999999999999864 5689999999999998865432 2357999999999999999999987
Q ss_pred CCCCceEEeecccccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccCCceeeeeeeE
Q 001081 259 TGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSL 334 (1162)
Q Consensus 259 ~~~~~~~i~~~~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~tg~~~~SKL~L 334 (1162)
...... ......+++...|.+.+++..+|..|..+|+++.|. |||||+||+|+|.+. ...|+|+|
T Consensus 171 ~~~~~~-----~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~------~~~skl~l 239 (344)
T 3dc4_A 171 TPHMPM-----VAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK------THHSRMNI 239 (344)
T ss_dssp CTTSBC-----CSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS------SCEEEEEE
T ss_pred CCCCcc-----ccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec------CcEEEEEE
Confidence 654321 112234788899999999999999999999988775 899999999999743 35799999
Q ss_pred EecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCCCcccCCCCccccccccccCCCcceEEEEEeCCCCCCH
Q 001081 335 VDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANM 414 (1162)
Q Consensus 335 VDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~ 414 (1162)
||||||||+.++++.|.+++|+.+||+||++||+||.+|+.++.||||||||||+||||+||||++|+||+||||+..++
T Consensus 240 VDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~ 319 (344)
T 3dc4_A 240 VDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDL 319 (344)
T ss_dssp EECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTCSSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCCGGGH
T ss_pred EECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccCCcCCccccHHHHHHHHHhCCCCEEEEEEEeCCchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHhhhccccc
Q 001081 415 SETLSSLNFSSRARSTVLSL 434 (1162)
Q Consensus 415 eETLsTLrFAsRAr~I~~~i 434 (1162)
+||++||+||+||+.....+
T Consensus 320 ~ETlsTL~fA~ra~~~~~~~ 339 (344)
T 3dc4_A 320 SETLSTLRFGTSAKAAALEH 339 (344)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhhcCCCC
Confidence 99999999999999865433
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=2.2e-72 Score=685.14 Aligned_cols=317 Identities=32% Similarity=0.470 Sum_probs=254.1
Q ss_pred CCCCCEEEEEeeC----CCCCCC---CC--ceEEeCC------CcEEEEecCCCccCCCCceeeeceeeCCCCChHHHHH
Q 001081 112 RKLGNIKVFCRTR----PLFEDE---GP--SVVEFTD------DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFS 176 (1162)
Q Consensus 112 rklGnIrV~~RVR----Pl~~~E---~~--s~V~~~d------~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQeeVFe 176 (1162)
+-++++||||||| |.+..| +. ..++.|+ ...|.+..+.. .....+.|+||+||+++++|++||+
T Consensus 371 ~il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~fd~vf~~~~~q~~v~~ 449 (715)
T 4h1g_A 371 ALKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNIN-NNFSNLRFLFDKIFEREQSNDLVFE 449 (715)
T ss_dssp SSSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEET-TEEEEEEEECSEEECSSCCHHHHGG
T ss_pred HHHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCC-CCCCCeEEEeceEeCCCCCHHHHHH
Confidence 3459999999999 443332 11 2233332 33455544322 1233589999999999999999999
Q ss_pred hhHHHHHHHhcCCceeEeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecchhcccc
Q 001081 177 DVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL 256 (1162)
Q Consensus 177 ~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL 256 (1162)
.|.|+|+++++|||+||||||||||||||||+|+ ++|||||++++||+.+.........|.|+|||+|||||+|+|||
T Consensus 450 ~~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i~DLl 527 (715)
T 4h1g_A 450 ELSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLL 527 (715)
T ss_dssp GTHHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEESS
T ss_pred HHHHHHHHHhCCceEEEEccCCCCCchhhccCCC--CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEEEECC
Confidence 9999999999999999999999999999999994 68999999999999988666667889999999999999999999
Q ss_pred CCCCCC--ceEEeecc---cccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcC----CceeEEEEEEEEEEeeccCCce
Q 001081 257 PQTGNG--LAKIRLQS---LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGEN 327 (1162)
Q Consensus 257 ~~~~~~--~~~i~~~~---~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~----SSRSH~IftI~V~~~n~~tg~~ 327 (1162)
.+.... ...++... ...+.+++++.|.+.+++..+|..|..+|+++.|. |||||+||+|+|.+.+..++..
T Consensus 528 ~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~~~~~ 607 (715)
T 4h1g_A 528 NPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKES 607 (715)
T ss_dssp SCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEETTTCCE
T ss_pred CCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEecCCCCE
Confidence 875432 22233222 23567899999999999999999999999988764 9999999999999998888888
Q ss_pred eeeeeeEEecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcC-CCCcccCCCCccccccccccCCCcceEEEEE
Q 001081 328 LYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS-RKDIVPYENSMLTKVLADSLGESSKTLMIVN 406 (1162)
Q Consensus 328 ~~SKL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~-k~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ 406 (1162)
..|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+. +..||||||||||+||||+|||||+|+||||
T Consensus 608 ~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~~t~~i~~ 687 (715)
T 4h1g_A 608 SYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVN 687 (715)
T ss_dssp EEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTCEEEEEEE
T ss_pred eEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCceEEEEEE
Confidence 899999999999999999999999999999999999999999999975 4589999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHhHHHHHhhhcc
Q 001081 407 ICPNAANMSETLSSLNFSSRARSTV 431 (1162)
Q Consensus 407 ISPs~~n~eETLsTLrFAsRAr~I~ 431 (1162)
|||+..+++||++||+||+||++|+
T Consensus 688 isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 688 ISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp ECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred ECCChhhHHHHHHHHHHHHHhccce
Confidence 9999999999999999999999985
No 29
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1e-25 Score=245.25 Aligned_cols=264 Identities=9% Similarity=0.163 Sum_probs=174.6
Q ss_pred HHhhhhhhcCCCCCEEEEEeeCCCC-CCCCCceEEeCCCcEEEEecCCCccCCCCceeeeceeeCCCCChH--HHHHhhH
Q 001081 103 YLGVLADKTRKLGNIKVFCRTRPLF-EDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQA--ELFSDVQ 179 (1162)
Q Consensus 103 ~~~~L~e~~rklGnIrV~~RVRPl~-~~E~~s~V~~~d~~tI~v~~~~~~~~~~~k~F~FDkVF~~~asQe--eVFe~V~ 179 (1162)
+++.+.|.. |||||||||||.. + ....+.+++.+ |.+ .. ..+.|.||+||++++.|+ +||+++.
T Consensus 15 L~NsI~ELK---GnIRVFcrvrp~~~p--~~~~v~y~~~~-I~v-~~------~~k~f~FDRVf~p~s~Qe~~~vf~E~~ 81 (298)
T 2o0a_A 15 LENSIIEQK---GTMRCYAYVMEQNLP--ENLLFDYENGV-ITQ-GL------SEHVYKFNRVIPHLKVSEDKFFTQEYS 81 (298)
T ss_dssp HHHHHHHHH---TCCEEEEEECGGGSC--TTEEEETTTTE-EEE-TT------TCCEEECSEEEETTTSCHHHHHHHTTH
T ss_pred HHhHHHHhh---CceEEEEEeccccCC--ccceeecCccc-eee-cC------CCceEEeeeEECccccccHHHHHHHHH
Confidence 445455543 9999999999965 3 23447788766 665 22 127999999999999999 9999999
Q ss_pred HHHHHHhc-CCceeEeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhccccccccccceeEEEEEEe-cchhccccC
Q 001081 180 PFVQSALD-GYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELY-NEQLRELLP 257 (1162)
Q Consensus 180 PLV~svLd-GyN~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIY-NE~V~DLL~ 257 (1162)
++|++|++ |||+||||||||||||| ||++..+|.....- ..+.|.+.+||+||| ||.++|||.
T Consensus 82 ~~i~scLd~GyNvcIfSyGQTGsGKT-------------~ral~q~f~~~~~~--~~~~Y~~tlq~veLy~Ne~~~DLL~ 146 (298)
T 2o0a_A 82 VYHDMCLNQKKNFNLISLSTTPHGSL-------------RESLIKFLAEKDTI--YQKQYVITLQFVFLSDDEFSQDMLL 146 (298)
T ss_dssp HHHHHHHHTTCCEEEEEECSSCCHHH-------------HHHHHHHHHSTTSH--HHHHEEEEEEEEEEECC-CEEETTS
T ss_pred HHHHHHHhCCCceEEEEECCCCCCcc-------------HHHHHHHHHHhhhh--cccceEEEEEEEEEecCCchHHhcC
Confidence 99999999 99999999999999999 99999999865320 128999999999999 999999997
Q ss_pred CCCCC-ceEEe--ecccccceeeeeeecCC-HHHHHHHHHHHHhhcCCCCcCCc-eeEEEEEEEEEEeeccCCc---eee
Q 001081 258 QTGNG-LAKIR--LQSLESSIELVQEKVDN-PLEFSKVLKSAFQSRGNDVSKFN-VSHLIIMIHIYYNNLITGE---NLY 329 (1162)
Q Consensus 258 ~~~~~-~~~i~--~~~~~~v~~Lt~~~V~S-~~e~~~lL~~g~~nR~~~~t~SS-RSH~IftI~V~~~n~~tg~---~~~ 329 (1162)
..+.. ...++ .+....+.+.+.+.|.+ .+|+..++..+..- ..+ +.-.|+.+.+...+....+ ...
T Consensus 147 ~~~~~~k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~~------~~~~~gi~i~k~~~~~~~~~~~~~~~~~~ 220 (298)
T 2o0a_A 147 DYSHNDKDSIKLKFEKHSISLDSKLVIIENGLEDLPLNFSCDEHP------NLPHSGMGIIKVQFFPRDSKSDGNNDPVP 220 (298)
T ss_dssp CCC------CEEEECSSCEEEESCCEEESSGGGGSCTTTTCC-------------CEEEEEEEEEEESCC-------CCC
T ss_pred CCCCCCcceEEecCCCCEEecccEEEEccccHHHHHHHhhccccc------ccCCCCceEEEEEEecCcccccccCCCCc
Confidence 44433 22222 33445567889999999 88877666211111 111 2345666666553321111 123
Q ss_pred eeeeEEecCCCcccccCCCcchhHHHHHHHhHhhHHHHHHHHhhcCCCCcccCCCCccccccccccCCCcceEEEEEeCC
Q 001081 330 SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICP 409 (1162)
Q Consensus 330 SKL~LVDLAGSER~~ks~a~G~RlkEa~~INkSLsaLg~VIsALs~k~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISP 409 (1162)
--+.|+.+.-.. +...|.+.+ ..+ -+-.|+++-+|+..|. ..|.++++++.-
T Consensus 221 ~d~yf~e~~~~~--------------------~~~~l~~~~---~~~----~~~~spi~~il~~ll~-~tks~~~~~l~~ 272 (298)
T 2o0a_A 221 VDFYFIELNNLK--------------------SIEQFDKSI---FKK----ESCETPIALVLKKLIS-DTKSFFLLNLND 272 (298)
T ss_dssp EEEEEEEECSHH--------------------HHHHHHHHH---HTC-----CCCSHHHHHHHHHHH-HSBCEEEEEECC
T ss_pred eEEEEEEeCCHH--------------------HHHHHHhhc---ccc----cccCCcHHHHHHHHHh-cCcceEEEEecC
Confidence 356676653322 122232222 112 3456888888887663 478899999976
Q ss_pred CCCCHHHHHHHhHHHHHhhhccc
Q 001081 410 NAANMSETLSSLNFSSRARSTVL 432 (1162)
Q Consensus 410 s~~n~eETLsTLrFAsRAr~I~~ 432 (1162)
...+. .-|..++++..+.+
T Consensus 273 ~~~~~----~lL~~s~~i~~~~~ 291 (298)
T 2o0a_A 273 SKNVN----KLLTISEEVQTQLC 291 (298)
T ss_dssp GGGHH----HHHHHHHHHHHHTC
T ss_pred CCchh----HHHHHHHHhhcccC
Confidence 43322 26777777766554
No 30
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.91 E-value=1.2e-25 Score=212.60 Aligned_cols=79 Identities=38% Similarity=0.571 Sum_probs=74.7
Q ss_pred HHHhHhhHHHHHHHHhhcCC-CCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHHhHHHHHhhhcccccC
Q 001081 357 LHVMKSLSALGDVLSSLTSR-KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLG 435 (1162)
Q Consensus 357 ~~INkSLsaLg~VIsALs~k-~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~eETLsTLrFAsRAr~I~~~i~ 435 (1162)
.+||+||++||+||.+|+.+ +.||||||||||+||+|+||||++|+||+||||+..+++||++||+||+||+.|++.+.
T Consensus 2 ~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~~ 81 (100)
T 2kin_B 2 KNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVS 81 (100)
T ss_dssp CBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEEC
T ss_pred CcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcce
Confidence 46999999999999999986 68999999999999999999999999999999999999999999999999999987554
No 31
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.90 E-value=1.2e-24 Score=211.28 Aligned_cols=76 Identities=41% Similarity=0.612 Sum_probs=72.2
Q ss_pred hHhhHHHHHHHHhhcCC-CCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHHhHHHHHhhhcccccC
Q 001081 360 MKSLSALGDVLSSLTSR-KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLG 435 (1162)
Q Consensus 360 NkSLsaLg~VIsALs~k-~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~eETLsTLrFAsRAr~I~~~i~ 435 (1162)
|+||++||+||.+|+++ +.||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||+.|++.+.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~ 77 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVS 77 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCce
Confidence 89999999999999886 47999999999999999999999999999999999999999999999999999987554
No 32
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.0063 Score=67.91 Aligned_cols=172 Identities=15% Similarity=0.255 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhc-CCCCCEEEEEeeCCCCCCCCCceEEeC
Q 001081 63 TKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYL---GVLADKT-RKLGNIKVFCRTRPLFEDEGPSVVEFT 138 (1162)
Q Consensus 63 ~~l~~l~~~l~~~k~~~~~lrqe~~el~e~~~~k~~~~~~~~---~~L~e~~-rklGnIrV~~RVRPl~~~E~~s~V~~~ 138 (1162)
+++..+..|+..++.+..+++.+++..+...|...+.+.+.+ ..|+..- .-.|.||+|.=+-+-.-++ ...|.+.
T Consensus 3 ~~~~~~~~e~~~~~~~~~~vq~kA~~~E~~Yn~~~dKmeqE~lrRRkLENSIdElKG~IRcFAYi~~~~~p~-~~~idY~ 81 (333)
T 4etp_B 3 SEIAALEKEIAALEKEIAALEKEISKQEKFYNDTYNTVCKELLRSRRLENSIIEQKGTMRVYAYVMEQNLPE-NLLFDYE 81 (333)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSCCS-SCEEETT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCcEEEEEEECcccCCc-cEEEecc
Confidence 445566777888888888888888887766665555443311 1122110 0129999999887632222 2345554
Q ss_pred CCcEEEEecCCCccCCCCceeeeceeeCCCC--ChHHHHHhhHHHHHHHh-cCCceeEeeeccCCCCCccccccCCCCCC
Q 001081 139 DDCTIRVNTGDDTISNPKKDFEFDRVYGPHV--GQAELFSDVQPFVQSAL-DGYNVSIFAYGQTHSGKTHTMEGSSHDRG 215 (1162)
Q Consensus 139 d~~tI~v~~~~~~~~~~~k~F~FDkVF~~~a--sQeeVFe~V~PLV~svL-dGyN~~IFAYGQTGSGKTyTM~Gs~~d~G 215 (1162)
+. +|. +. ...+.|.|++|++... .+..+|++.+..++-|+ .+.|+.||..|+.- ++
T Consensus 82 ~~-~It-~~------~~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~~~~NfslIsis~~~-------------w~ 140 (333)
T 4etp_B 82 NG-VIT-QG------LSEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMALNQKKNFNLISLSTTP-------------HG 140 (333)
T ss_dssp TT-EEE-C--------CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHHHTTCCEEEEEEESSC-------------CC
T ss_pred cc-eEe-ec------CCcceEEEeeeechhhcchHHHHHHHHHHHHHHHHccCCCeeEEEecCCC-------------cH
Confidence 43 444 11 1238999999998776 67778889999999999 89999999998641 11
Q ss_pred hHHHHHHHHHHhhccc-cccccccceeEEEEEEecch-hccccCCC
Q 001081 216 LYARCFEELFDLSNSD-TTATARFNFAVTVFELYNEQ-LRELLPQT 259 (1162)
Q Consensus 216 IIPRaledLF~~i~~~-~~~~~~f~V~VS~lEIYNE~-V~DLL~~~ 259 (1162)
- .-..|+..+... .--.+.|.+.+.|+.+.++. ..|||.+.
T Consensus 141 ~---Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~ 183 (333)
T 4etp_B 141 S---LRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDY 183 (333)
T ss_dssp H---HHHHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSCC-
T ss_pred H---HHHHHHHHHHhcccccccceEEEEEEEEEcCCCchhhhhccc
Confidence 1 222333333221 00136789999998888776 78999775
No 33
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.32 E-value=0.23 Score=53.82 Aligned_cols=33 Identities=15% Similarity=0.382 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001081 599 AVSKKLEEELKKRDALIERLHEENEKLFDRLTE 631 (1162)
Q Consensus 599 ~lkkKLEEELkkrd~~ieqL~eEneKL~~~l~~ 631 (1162)
.+...+..-.++++.....+-......|+++-.
T Consensus 154 e~~~e~~~l~~~r~~l~~~i~~~lL~~Yerir~ 186 (256)
T 3na7_A 154 NIKETQQIIFKKKEDLVEKTEPKIYSFYERIRR 186 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 333444444455666666555666667777653
No 34
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.21 E-value=0.3 Score=51.26 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=2.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 001081 611 RDALIERLHEENEKLFDRLTEK 632 (1162)
Q Consensus 611 rd~~ieqL~eEneKL~~~l~~k 632 (1162)
....+++|+.|.-.|.+.+...
T Consensus 159 l~~~~QRLkdE~rDLk~El~v~ 180 (189)
T 2v71_A 159 LLVSVQRLKDEARDLRQELAVR 180 (189)
T ss_dssp HHCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567777777777776444
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.18 E-value=0.049 Score=64.73 Aligned_cols=25 Identities=8% Similarity=0.114 Sum_probs=13.5
Q ss_pred EEEeCCCCCCHHHHHHHhHHHHHhh
Q 001081 404 IVNICPNAANMSETLSSLNFSSRAR 428 (1162)
Q Consensus 404 Ia~ISPs~~n~eETLsTLrFAsRAr 428 (1162)
+||-.+........+..+.....+.
T Consensus 391 ~cc~~~~~~~~~~~~~~l~~~~~~~ 415 (597)
T 3oja_B 391 LCCKESDKPYLDRLLQYIALTSVVE 415 (597)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCccchhHHHHHhhHHHHhh
Confidence 4555555555555555555554443
No 36
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=95.89 E-value=0.2 Score=59.01 Aligned_cols=97 Identities=9% Similarity=0.117 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 453 ELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLL 532 (1162)
Q Consensus 453 el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk~~k~~~elq~~Lk~e~~~L~~k~k~~kEe~~qL~~ql~qll 532 (1162)
...++...|++|+.+++.+.+....+..-...+.+++++......++.+...+-...|+.++..++++++....++..|+
T Consensus 58 qErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQ 137 (562)
T 3ghg_A 58 VNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQ 137 (562)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777888888888886655555544444555554444444444443333333555556555555555445555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001081 533 QLEQEQKMQIQQRDSTI 549 (1162)
Q Consensus 533 q~eeE~k~qiqq~e~eI 549 (1162)
...+++..+|+.++..|
T Consensus 138 snLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 138 KNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666666554
No 37
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.63 E-value=2.4 Score=45.84 Aligned_cols=50 Identities=16% Similarity=0.196 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 513 KHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQ 562 (1162)
Q Consensus 513 k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~Q 562 (1162)
.+...+.++..+...+.++....+..+..+.+.+..+..++..+...+.+
T Consensus 98 Eie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~ 147 (256)
T 3na7_A 98 EEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESL 147 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444333334444444444444444333333
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.58 E-value=0.093 Score=62.31 Aligned_cols=16 Identities=25% Similarity=0.493 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 001081 460 EIQDLKQEILGLRQAL 475 (1162)
Q Consensus 460 eI~eLk~Ei~~Lr~~L 475 (1162)
++.+++.++..+++++
T Consensus 457 e~~~~~~~i~~l~~~~ 472 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQ 472 (597)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 39
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.19 E-value=0.068 Score=69.39 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=21.3
Q ss_pred ChHHHHHHHHHHhhccccccc-cccceeEEEEEEecchhc
Q 001081 215 GLYARCFEELFDLSNSDTTAT-ARFNFAVTVFELYNEQLR 253 (1162)
Q Consensus 215 GIIPRaledLF~~i~~~~~~~-~~f~V~VS~lEIYNE~V~ 253 (1162)
+|..|.+.+|...|+..-... ......|..+.||+=.++
T Consensus 432 ~lY~~lF~wlv~~iN~~l~~~~~~~~~~IgvLDi~GFE~f 471 (1184)
T 1i84_S 432 AKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIF 471 (1184)
T ss_dssp HHHHHHHHHHHHHHTTTCC------CEEEEEEECCCCCCC
T ss_pred HHHHHHHHHHHHHHHHhhCCCccCCcceEEEeecCCcCCC
Confidence 566777777777776433222 223456777777754433
No 40
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.15 E-value=0.054 Score=70.35 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001081 459 KEIQDLKQEILGLRQALKEAND 480 (1162)
Q Consensus 459 ~eI~eLk~Ei~~Lr~~L~~~~e 480 (1162)
.++.+|+.++..++..+...+.
T Consensus 857 ~El~~L~~eL~el~~~L~~le~ 878 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEA 878 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555544444433
No 41
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.27 E-value=0.69 Score=59.73 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHHhhccccccccccceeEEEEEEecchhcc
Q 001081 215 GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRE 254 (1162)
Q Consensus 215 GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~V~D 254 (1162)
+|..|.+..|...++..-.........|..+.||+=.+++
T Consensus 406 ~lY~~LF~wlV~~iN~~l~~~~~~~~~IgvLDI~GFE~f~ 445 (1080)
T 2dfs_A 406 HIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFE 445 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSCCCEEEEEEEECCCCCCS
T ss_pred HHHHHHHHHHHHHHHHhhccccccCceEEeeccCCccccC
Confidence 6777777777777664322222335677888888554443
No 42
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.11 E-value=0.01 Score=59.39 Aligned_cols=51 Identities=20% Similarity=0.183 Sum_probs=39.8
Q ss_pred ceeeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
+.++||.....+..|.++++.+..+++++--.....++-||++|+|||+.+
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 457888877666678899988888887764444456788999999999987
No 43
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.83 E-value=2.7 Score=59.75 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=14.3
Q ss_pred HHhhHHHHHhhCcccccc--------CchhHHHHHHHHHHHHHHHHhhcccceee
Q 001081 1076 MLTSLDELAERMPSLLDI--------DHPCAQRQIADARRMVEVLQQMRSDVALL 1122 (1162)
Q Consensus 1076 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1122 (1162)
+..-++++.+++|..++. ..|-.-=...+..++-+.|..||++..=|
T Consensus 2981 v~~~~~~~l~~lP~~~~~~~~~~~~~~~pl~~vl~QE~~r~n~Ll~~ir~sL~~L 3035 (3245)
T 3vkg_A 2981 LRATITEWTKLLPKPLKQLKRTTQNIKDPLFRCFEREISTGGKLVKKITNDLANL 3035 (3245)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 666677777788776642 12322222345566666677777765433
No 44
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=93.42 E-value=6.3 Score=38.65 Aligned_cols=49 Identities=8% Similarity=0.157 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 517 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 565 (1162)
Q Consensus 517 ~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e 565 (1162)
+.....++..++..+....++.......+...-..++.++.+|+.++..
T Consensus 74 L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 74 LIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555544544444555555555555555555555543
No 45
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.33 E-value=3 Score=59.32 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 456 EREKEIQDLKQEILGLRQALKEANDQCVLLYNE 488 (1162)
Q Consensus 456 ~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~E 488 (1162)
+...++.+|+.++..++.+|++...++..+..+
T Consensus 1931 et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~ 1963 (3245)
T 3vkg_A 1931 DTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQ 1963 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777776666655555444333
No 46
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=93.21 E-value=7.7 Score=44.45 Aligned_cols=95 Identities=12% Similarity=0.168 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 455 YEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQL 534 (1162)
Q Consensus 455 ~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk~~k~~~elq~~Lk~e~~~L~~k~k~~kEe~~qL~~ql~qllq~ 534 (1162)
......|.+|+.++..+.+.-.....-...+.+.+.+..+...+.+....+-...|+.++..+++.++..-..+..|...
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~ 142 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKN 142 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 35566777777777777666555444444444444444444444555555555556666665555555444455555555
Q ss_pred HHHHHHHHHHHHHHH
Q 001081 535 EQEQKMQIQQRDSTI 549 (1162)
Q Consensus 535 eeE~k~qiqq~e~eI 549 (1162)
.+++..+|+.++..|
T Consensus 143 l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 143 VRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666666655
No 47
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.50 E-value=0.038 Score=56.03 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=37.1
Q ss_pred ceeeeceeeCCCCChHHHHHhhHHHHHHHhcCCc-eeEeeeccCCCCCcccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYN-VSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN-~~IFAYGQTGSGKTyTM 207 (1162)
..++||.+...+..+..+++.+..++...-.++. ..|+-||++|+||||.+
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 4567887666555677788777666665544332 67889999999999987
No 48
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.33 E-value=3.8 Score=52.99 Aligned_cols=21 Identities=5% Similarity=0.112 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001081 540 MQIQQRDSTIKTLQAKINSIE 560 (1162)
Q Consensus 540 ~qiqq~e~eIe~L~~eL~eLe 560 (1162)
+++..+++++..|++.+.+|+
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444
No 49
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=91.94 E-value=12 Score=38.71 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001081 546 DSTIKTLQAKINSIESQR 563 (1162)
Q Consensus 546 e~eIe~L~~eL~eLe~QL 563 (1162)
.+.+.+++.++..|..++
T Consensus 89 se~~~elq~ri~~L~~El 106 (168)
T 3o0z_A 89 SEMIGDLQARITSLQEEV 106 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444443333
No 50
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=91.70 E-value=15 Score=38.62 Aligned_cols=35 Identities=11% Similarity=0.349 Sum_probs=15.8
Q ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 440 IKKWRDIANDARKELYEREKEIQDLKQEILGLRQA 474 (1162)
Q Consensus 440 ikk~k~i~~~~~~el~~l~~eI~eLk~Ei~~Lr~~ 474 (1162)
+..|+..+......+..++.++.+.+..-..|...
T Consensus 12 ~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~E 46 (189)
T 2v71_A 12 TAYWKELSMKYKQSFQEARDELVEFQEGSRELEAE 46 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555444444444444444444444333333
No 51
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.89 E-value=0.1 Score=57.77 Aligned_cols=51 Identities=18% Similarity=0.322 Sum_probs=35.6
Q ss_pred eeeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 158 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 158 ~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
.++||.+......+..++..+..++...-.+....|+-||++|+||||.+.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 467777554444566677766666666544445678889999999999984
No 52
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.79 E-value=1.2 Score=52.06 Aligned_cols=73 Identities=26% Similarity=0.418 Sum_probs=44.4
Q ss_pred eeeeceeeCCCCChHHHHHhh-HHHHH-HHhc--CC--ceeEeeeccCCCCCcccccc--------------C---CCCC
Q 001081 158 DFEFDRVYGPHVGQAELFSDV-QPFVQ-SALD--GY--NVSIFAYGQTHSGKTHTMEG--------------S---SHDR 214 (1162)
Q Consensus 158 ~F~FDkVF~~~asQeeVFe~V-~PLV~-svLd--Gy--N~~IFAYGQTGSGKTyTM~G--------------s---~~d~ 214 (1162)
.-+||.|-+-+.--+++.+.| .|+.. ..+. |. .-.|+-||+.|+|||++.-. + ....
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYL 247 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSC
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcccc
Confidence 356777776554444444443 33322 2222 32 33599999999999987531 1 1235
Q ss_pred ChHHHHHHHHHHhhcc
Q 001081 215 GLYARCFEELFDLSNS 230 (1162)
Q Consensus 215 GIIPRaledLF~~i~~ 230 (1162)
|-..+.++++|.....
T Consensus 248 Ge~e~~ir~lF~~A~~ 263 (428)
T 4b4t_K 248 GEGPRMVRDVFRLARE 263 (428)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHH
Confidence 7788899999986653
No 53
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.02 E-value=25 Score=40.73 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=6.9
Q ss_pred eeeeEEecCCCc
Q 001081 330 SKLSLVDLAGSE 341 (1162)
Q Consensus 330 SKL~LVDLAGSE 341 (1162)
..|..+||.|..
T Consensus 237 ~~L~~L~l~~N~ 248 (487)
T 3oja_A 237 QNLEHFDLRGNG 248 (487)
T ss_dssp TTCCEEECTTCC
T ss_pred CCCCEEEcCCCC
Confidence 356666666543
No 54
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=85.83 E-value=24 Score=33.30 Aligned_cols=53 Identities=11% Similarity=0.187 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 508 YMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 560 (1162)
Q Consensus 508 ~~L~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe 560 (1162)
..|+.++.....+++....++.......++........+.++..|..+|+-|+
T Consensus 47 ~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 47 VQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444555555555666666666555555555555666777788888877665
No 55
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.54 E-value=6.1 Score=45.86 Aligned_cols=36 Identities=8% Similarity=-0.104 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 531 LLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 566 (1162)
Q Consensus 531 llq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~ 566 (1162)
+.+..+.+..++++.+++.+.++.+++++..++.+.
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASA 468 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhc
Confidence 333344444455555555555555555555555443
No 56
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=85.52 E-value=29 Score=33.96 Aligned_cols=18 Identities=17% Similarity=0.396 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001081 543 QQRDSTIKTLQAKINSIE 560 (1162)
Q Consensus 543 qq~e~eIe~L~~eL~eLe 560 (1162)
...+.++..|+..|.+++
T Consensus 107 kkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 107 RKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444455555554444
No 57
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.04 E-value=11 Score=36.98 Aligned_cols=43 Identities=23% Similarity=0.020 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 513 KHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAK 555 (1162)
Q Consensus 513 k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~e 555 (1162)
.+..+..++.+++.......+.++++-.--..++.+|..|+.-
T Consensus 85 ~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRkL 127 (131)
T 3tnu_A 85 MIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRRL 127 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444555444444444444332223456666666544
No 58
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.49 E-value=19 Score=35.15 Aligned_cols=39 Identities=23% Similarity=0.137 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 516 IEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQA 554 (1162)
Q Consensus 516 ~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~ 554 (1162)
.+..++.+++.......+.++++-.--..++.+|..|+.
T Consensus 86 ~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRk 124 (129)
T 3tnu_B 86 ELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRK 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444322222344556666554
No 59
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.47 E-value=3.4 Score=48.23 Aligned_cols=50 Identities=22% Similarity=0.315 Sum_probs=31.6
Q ss_pred eeeeceeeCCCCChHHHHHhh-HHHHH-HHhc--C--CceeEeeeccCCCCCcccc
Q 001081 158 DFEFDRVYGPHVGQAELFSDV-QPFVQ-SALD--G--YNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 158 ~F~FDkVF~~~asQeeVFe~V-~PLV~-svLd--G--yN~~IFAYGQTGSGKTyTM 207 (1162)
.-+||.|-+-+..-+++.+.| .|+.. ..+. | ..-.|+-||+.|+|||++.
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHH
Confidence 456788877665555555554 45532 2232 3 2346888999999999765
No 60
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=84.11 E-value=12 Score=44.56 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 523 QLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIES 561 (1162)
Q Consensus 523 qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~ 561 (1162)
+|+.++..|..+.+.+..+|+.++..|+++..+|+.||.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444444444444444444443
No 61
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=83.32 E-value=0.59 Score=51.52 Aligned_cols=46 Identities=17% Similarity=0.160 Sum_probs=34.6
Q ss_pred eeeeceeeCCCCChHHHHHhhHHHHHHHhcCCce--eEeeeccCCCCCcccc
Q 001081 158 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNV--SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 158 ~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~--~IFAYGQTGSGKTyTM 207 (1162)
.+.||.+.+ |+.+...+..++..+-.|... .++-||++|+|||+..
T Consensus 40 ~~~~~~ivG----~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 40 RQASQGMVG----QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CSEETTEES----CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred CcchhhccC----hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 455676665 666666666677777777654 8999999999999887
No 62
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=83.09 E-value=0.44 Score=48.44 Aligned_cols=45 Identities=24% Similarity=0.442 Sum_probs=28.9
Q ss_pred eeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 159 FEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 159 F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
++|+.+++. ..+..+++.+..++. .+....|+-||++|+|||+.+
T Consensus 25 ~~~~~~~~~-~~~~~~~~~l~~~~~---~~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIGALKSAAS---GDGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSTTTSCC---CCHHHHHHHHHHHH---TCSCSEEEEECSTTSSHHHHH
T ss_pred CChhhccCC-CCCHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHH
Confidence 566665552 334555555444332 335667899999999999987
No 63
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=82.42 E-value=0.34 Score=51.29 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=22.5
Q ss_pred eeeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 158 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 158 ~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.|+||.+.+.+. ....+...+..+.. .+..|+-||.+|+|||+..
T Consensus 2 ~~~f~~~ig~~~----~~~~~~~~~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEAN----SFLEVLEQVSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCH----HHHHHHHHHHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCH----HHHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 478888876433 33333333333332 3467888999999999876
No 64
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=82.40 E-value=28 Score=40.88 Aligned_cols=94 Identities=17% Similarity=0.185 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 456 EREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLE 535 (1162)
Q Consensus 456 ~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk~~k~~~elq~~Lk~e~~~L~~k~k~~kEe~~qL~~ql~qllq~e 535 (1162)
.....|.+|+..+..+.+.-.....-...+.+.+.+..+.....+....+-...|+.++.-+++.++..-..+..|....
T Consensus 62 dv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l 141 (491)
T 1m1j_A 62 NYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSI 141 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666665443333333333333344434444444444444444455555555554444434444444444
Q ss_pred HHHHHHHHHHHHHH
Q 001081 536 QEQKMQIQQRDSTI 549 (1162)
Q Consensus 536 eE~k~qiqq~e~eI 549 (1162)
+++..+|+.++..|
T Consensus 142 ~~q~skIQRLE~dI 155 (491)
T 1m1j_A 142 QEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 65
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=81.32 E-value=46 Score=39.31 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 541 QIQQRDSTIKTLQAKINSIESQRNEA 566 (1162)
Q Consensus 541 qiqq~e~eIe~L~~eL~eLe~QL~e~ 566 (1162)
.|..+...++.+..+|..|+..+..+
T Consensus 169 ~i~~L~~~~~~l~~ki~~l~~~~~~~ 194 (464)
T 1m1j_B 169 SLRVLRAVIDSLHKKIQKLENAIATQ 194 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666666777776666543
No 66
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=80.04 E-value=40 Score=31.63 Aligned_cols=51 Identities=14% Similarity=0.242 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 510 LADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 560 (1162)
Q Consensus 510 L~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe 560 (1162)
+..+++....+.+....++.......++........+.++..|+.+|+-++
T Consensus 49 L~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 49 LQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444444444555555555555554445544555556667777777776554
No 67
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=79.44 E-value=0.76 Score=50.16 Aligned_cols=49 Identities=20% Similarity=0.344 Sum_probs=30.9
Q ss_pred ceeeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..|+||.+... ..+...+..+..++..-- +....++-||++|+|||+.+
T Consensus 6 ~~~~f~~fv~g-~~~~~a~~~~~~~~~~~~-~~~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 6 PKYTLENFIVG-EGNRLAYEVVKEALENLG-SLYNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp TTCCSSSCCCC-TTTHHHHHHHHHHHHTTT-TSCSSEEEECSSSSSHHHHH
T ss_pred CCCCcccCCCC-CcHHHHHHHHHHHHhCcC-CCCCeEEEECCCCCcHHHHH
Confidence 45788886532 334455555444443311 13356889999999999987
No 68
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=79.42 E-value=0.85 Score=44.13 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=21.9
Q ss_pred HHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 179 QPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 179 ~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..++..+..+....|+-||++|+|||+.+
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 34444444566677899999999999987
No 69
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=78.35 E-value=0.81 Score=48.66 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=29.8
Q ss_pred ceeeeceeeCCCCChHHHHHhh-HHH-----HHHHhcCCceeEeeeccCCCCCcccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDV-QPF-----VQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V-~PL-----V~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+.|+.+.+.+..-+.+.+.+ .++ ....--.....|+-||++|+|||+..
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3577888877544433443332 111 11110124456899999999999876
No 70
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=78.10 E-value=1 Score=47.50 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=33.5
Q ss_pred ceeeeceeeCCCCChHHHHHhhHHH-----HHHHhcCCceeEeeeccCCCCCcccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDVQPF-----VQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V~PL-----V~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+.|+.+.+.+...+.+.+.+..+ ...+-......|+-||++|+|||+..
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 4578899998877766666544321 11111122345899999999999987
No 71
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.14 E-value=8.6 Score=44.59 Aligned_cols=49 Identities=22% Similarity=0.313 Sum_probs=29.8
Q ss_pred eeeceeeCCCCChHHHHHhh-HHHHH-HHhc--CC--ceeEeeeccCCCCCcccc
Q 001081 159 FEFDRVYGPHVGQAELFSDV-QPFVQ-SALD--GY--NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 159 F~FDkVF~~~asQeeVFe~V-~PLV~-svLd--Gy--N~~IFAYGQTGSGKTyTM 207 (1162)
-+||.|-+-+..-+++.+.| -|+.. ..+. |. .-.|+-||+.|+|||++.
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence 45677666554444455544 35432 2333 32 346999999999999764
No 72
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=76.07 E-value=0.8 Score=45.22 Aligned_cols=41 Identities=29% Similarity=0.498 Sum_probs=24.9
Q ss_pred eeeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 158 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 158 ~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.++||.-+. . .+.+.+..+..+ .| -.++-||++|+|||+.+
T Consensus 13 ~~~~~~f~~-g-~n~~~~~~l~~~-----~g--~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 13 YPSFDKFLG-T-ENAELVYVLRHK-----HG--QFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCCCCCCCS-C-CTHHHHHHCCCC-----CC--SEEEEESSSTTTTCHHH
T ss_pred ccchhhcCc-C-ccHHHHHHHHhc-----CC--CEEEEECCCCCCHHHHH
Confidence 455655333 3 344444443322 34 35667999999999997
No 73
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=75.77 E-value=0.77 Score=50.25 Aligned_cols=49 Identities=20% Similarity=0.162 Sum_probs=32.5
Q ss_pred eeeceeeCCCCChHHHHHhhHHHHHHHhc-CCceeEeeeccCCCCCcccc
Q 001081 159 FEFDRVYGPHVGQAELFSDVQPFVQSALD-GYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 159 F~FDkVF~~~asQeeVFe~V~PLV~svLd-GyN~~IFAYGQTGSGKTyTM 207 (1162)
|..+.+++.-..++...+.+...+..++. +...+++-||++|+|||+++
T Consensus 12 l~~~~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 12 LLPDYVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp HSTTCCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred cCCccCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 33333444444566666666665655553 44568999999999999887
No 74
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=75.75 E-value=0.97 Score=43.86 Aligned_cols=29 Identities=17% Similarity=0.119 Sum_probs=21.9
Q ss_pred HHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 179 QPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 179 ~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..++..+..+....|+-||++|+|||+.+
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 34444445566778899999999999977
No 75
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=75.41 E-value=1.1 Score=47.70 Aligned_cols=21 Identities=38% Similarity=0.374 Sum_probs=18.2
Q ss_pred cCCceeEeeeccCCCCCcccc
Q 001081 187 DGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 187 dGyN~~IFAYGQTGSGKTyTM 207 (1162)
......|+-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 556678999999999999976
No 76
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=75.38 E-value=76 Score=37.49 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001081 457 REKEIQDLKQEILGLRQA 474 (1162)
Q Consensus 457 l~~eI~eLk~Ei~~Lr~~ 474 (1162)
.+..|++|+..+.++.+.
T Consensus 98 V~~~LqeLe~~l~~lsn~ 115 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDT 115 (464)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhh
Confidence 455566666666555433
No 77
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=75.19 E-value=8.4 Score=46.53 Aligned_cols=108 Identities=15% Similarity=0.251 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 456 EREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKV---SFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLL 532 (1162)
Q Consensus 456 ~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk~~k~---~~elq~~Lk~e~~~L~~k~k~~kEe~~qL~~ql~qll 532 (1162)
+++..+.+++++....+.+|...++....+..+.+.+... .......++.++..|........++...|..++.+..
T Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~ 418 (575)
T 2i1j_A 339 EYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQ 418 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3344444444444444444544444433333332222111 1112222333333444333333344444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 533 QLEQEQKMQIQQRDSTIKTLQAKINSIESQR 563 (1162)
Q Consensus 533 q~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL 563 (1162)
.....+..+...++.+...++.++...+..+
T Consensus 419 ~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~ 449 (575)
T 2i1j_A 419 EEVSRIQQEVELKDSETRRLQEEVEDARRKQ 449 (575)
T ss_dssp -----------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555555665555554433
No 78
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=75.06 E-value=1.6 Score=45.88 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=30.1
Q ss_pred ceeeeceeeCCCCChHHHHHhhHHHHHHHhc---------CCceeEeeeccCCCCCcccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDVQPFVQSALD---------GYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V~PLV~svLd---------GyN~~IFAYGQTGSGKTyTM 207 (1162)
..+.|+.+.+. +.+.+.+..++..+.. .....|+-||++|+|||+.+
T Consensus 7 ~~~~~~~i~G~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 7 IKTTFADVAGC----DEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp SCCCGGGSCSC----HHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCCHHHhcCc----HHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 34678887764 4455554444443221 12346899999999999876
No 79
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=75.03 E-value=41 Score=40.85 Aligned_cols=18 Identities=6% Similarity=0.296 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001081 545 RDSTIKTLQAKINSIESQ 562 (1162)
Q Consensus 545 ~e~eIe~L~~eL~eLe~Q 562 (1162)
++.+.+.++++|+.|+.+
T Consensus 565 ~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 565 FQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 355666666666666654
No 80
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=74.98 E-value=1 Score=50.52 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=23.3
Q ss_pred hHHHHHHHh-cCCceeEeeeccCCCCCcccc
Q 001081 178 VQPFVQSAL-DGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 178 V~PLV~svL-dGyN~~IFAYGQTGSGKTyTM 207 (1162)
+...+..++ .|...+++-||++|+|||.++
T Consensus 32 i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 32 IFLPIYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 444445554 577789999999999999887
No 81
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=74.58 E-value=57 Score=30.57 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 520 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 566 (1162)
Q Consensus 520 e~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~ 566 (1162)
+..++..+-.+..+.+...+.++.++..+..++..++.--..+|..+
T Consensus 47 E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 47 EAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444445555555555566666666655555555443
No 82
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=74.17 E-value=1.5 Score=48.28 Aligned_cols=39 Identities=15% Similarity=0.178 Sum_probs=29.6
Q ss_pred CChHHHHHhhHHHHHHHhcCCc-e--eEeeeccCCCCCcccc
Q 001081 169 VGQAELFSDVQPFVQSALDGYN-V--SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 169 asQeeVFe~V~PLV~svLdGyN-~--~IFAYGQTGSGKTyTM 207 (1162)
..++...+.+...+..++.|.. . +++-||++|+|||+++
T Consensus 20 ~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 20 PHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 4466677777667777766643 4 6899999999999987
No 83
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=73.79 E-value=62 Score=32.19 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 517 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 565 (1162)
Q Consensus 517 ~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e 565 (1162)
..+++..+..++....-..++.+.++.++..++..|+.++..|+.++..
T Consensus 87 ~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 87 KDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444555555556666666666666655543
No 84
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=73.70 E-value=21 Score=34.08 Aligned_cols=65 Identities=14% Similarity=0.177 Sum_probs=46.8
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 501 SDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 565 (1162)
Q Consensus 501 ~~Lk~e~~~L~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e 565 (1162)
..|.++...+.=++..++..+.++.+.+.++.....+...++...+..+..|+.++..++.++++
T Consensus 19 AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 19 AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555566667777777777777777777777777777778888888888888877754
No 85
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=73.55 E-value=1.1 Score=46.93 Aligned_cols=51 Identities=24% Similarity=0.275 Sum_probs=28.3
Q ss_pred ceeeeceeeCCCCChHHHHHhhHHHH-HHHhcCC----ceeEeeeccCCCCCcccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDVQPFV-QSALDGY----NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V~PLV-~svLdGy----N~~IFAYGQTGSGKTyTM 207 (1162)
..++||.|.+.+....++.+-+..+- ..++.+. ...|+-||++|+|||+.+
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 45788888775433333322111110 0122221 223899999999999987
No 86
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.46 E-value=8.9 Score=44.85 Aligned_cols=50 Identities=24% Similarity=0.378 Sum_probs=29.7
Q ss_pred eeeeceeeCCCCChHHHHHhh-HHHHH-HHhc--CC--ceeEeeeccCCCCCcccc
Q 001081 158 DFEFDRVYGPHVGQAELFSDV-QPFVQ-SALD--GY--NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 158 ~F~FDkVF~~~asQeeVFe~V-~PLV~-svLd--Gy--N~~IFAYGQTGSGKTyTM 207 (1162)
..+||.|-+-+..-+++.+.| -|+.. ..+. |. .-.|+-||+.|+|||++.
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 456777766544444444443 34332 2332 32 346899999999999875
No 87
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=73.15 E-value=1.3 Score=48.13 Aligned_cols=44 Identities=18% Similarity=0.382 Sum_probs=29.3
Q ss_pred ceeeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..|+|+.+++. ..+... +...++.+....|+-||++|+|||+..
T Consensus 19 ~~~~f~~i~G~----~~~~~~---l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQ----EDMKLA---LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSC----HHHHHH---HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccCh----HHHHHH---HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 56888988764 333332 233334444556999999999999876
No 88
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=72.82 E-value=1.3 Score=48.20 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=27.0
Q ss_pred eceeeCCCCChHHHHHhh-HHHHHHHhc--CCc--eeEeeeccCCCCCcccc
Q 001081 161 FDRVYGPHVGQAELFSDV-QPFVQSALD--GYN--VSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 161 FDkVF~~~asQeeVFe~V-~PLV~svLd--GyN--~~IFAYGQTGSGKTyTM 207 (1162)
||.+|+...--..+.+.+ ..++.+.+. |.. ..|+-||++|+|||+..
T Consensus 2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 444444333333344433 455555543 222 36788999999999865
No 89
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=71.83 E-value=2.3 Score=44.22 Aligned_cols=44 Identities=25% Similarity=0.254 Sum_probs=28.2
Q ss_pred eeceeeCCCCChHHHHHhhHHHHHHHhc---------CCceeEeeeccCCCCCcccc
Q 001081 160 EFDRVYGPHVGQAELFSDVQPFVQSALD---------GYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 160 ~FDkVF~~~asQeeVFe~V~PLV~svLd---------GyN~~IFAYGQTGSGKTyTM 207 (1162)
.|+.+.+ ++++-+.+..++..+.. .....|+-||++|+|||+..
T Consensus 4 ~~~~i~G----~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 4 SFKDVAG----MHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CTTSSCS----CHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHH
T ss_pred CHHHhCC----HHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHH
Confidence 4566655 44455555444443321 33456899999999999976
No 90
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=71.81 E-value=1.6 Score=50.57 Aligned_cols=48 Identities=23% Similarity=0.407 Sum_probs=29.8
Q ss_pred ceeeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..|+||..... .++...+..+..++.. .|....++-||++|+|||+.+
T Consensus 100 ~~~tfd~fv~g-~~n~~a~~~~~~~a~~--~~~~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 100 PDYTFENFVVG-PGNSFAYHAALEVAKH--PGRYNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp TTCSGGGCCCC-TTTHHHHHHHHHHHHS--TTSSCCEEEECSSSSSHHHHH
T ss_pred CCCChhhcCCC-CchHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHH
Confidence 56888875532 2334445444433332 231346889999999999988
No 91
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=71.66 E-value=72 Score=37.62 Aligned_cols=26 Identities=8% Similarity=0.164 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 455 YEREKEIQDLKQEILGLRQALKEAND 480 (1162)
Q Consensus 455 ~~l~~eI~eLk~Ei~~Lr~~L~~~~e 480 (1162)
...+..|++|+..+.++.+.-..+.+
T Consensus 91 ~~V~~dl~~Le~~l~~isn~Ts~a~~ 116 (461)
T 3ghg_B 91 RPIRNSVDELNNNVEAVSQTSSSSFQ 116 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHhhhHHHHH
Confidence 34556667777666666555444433
No 92
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=71.42 E-value=2.1 Score=45.90 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=16.5
Q ss_pred CCceeEeeeccCCCCCcccc
Q 001081 188 GYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 188 GyN~~IFAYGQTGSGKTyTM 207 (1162)
.....|+-||++|+|||++.
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34447999999999999876
No 93
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=71.33 E-value=47 Score=33.73 Aligned_cols=45 Identities=20% Similarity=0.119 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 520 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 564 (1162)
Q Consensus 520 e~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~ 564 (1162)
.+..++..+.++.....++++.+..+...++.++.++..|..++.
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n 113 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENN 113 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555556666666666677777766666654
No 94
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=70.56 E-value=2 Score=49.70 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=34.7
Q ss_pred eeeeceeeCCCCChHHHHHhhHHHHHHHhcCCc--eeEeeeccCCCCCcccc
Q 001081 158 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYN--VSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 158 ~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN--~~IFAYGQTGSGKTyTM 207 (1162)
.+.||.|.+ |+++.+.+..+++.+..|.. ..|+-||++|+|||+..
T Consensus 33 ~~~~~~iiG----~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVG----QENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEES----CHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccC----HHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 456676664 77787777777777777754 36788999999999876
No 95
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=70.20 E-value=1.8 Score=44.15 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=20.4
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..+++|.| ++..++||||||.+.
T Consensus 43 ~~i~~~~~~~~--~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 43 RAIMPIIEGHD--VLAQAQSGTGKTGTF 68 (224)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 44566778877 678899999999873
No 96
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=69.95 E-value=2 Score=43.05 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=19.4
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..+++|.| ++..++||||||.+.
T Consensus 32 ~~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 32 ESIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHHccCCC--EEEECCCCCchHHHH
Confidence 34556678876 567789999999764
No 97
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=69.14 E-value=31 Score=34.42 Aligned_cols=45 Identities=13% Similarity=0.162 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 519 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 563 (1162)
Q Consensus 519 Ee~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL 563 (1162)
.++.++...+..+.+.....++++.+...+++.|+.++++|+.++
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444
No 98
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=69.11 E-value=1.9 Score=42.72 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=22.5
Q ss_pred hHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 171 QAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 171 QeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
+.++.+.+...+. .+....++-||++|+|||+.+
T Consensus 22 ~~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 22 QDEVIQRLKGYVE---RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CHHHHHHHHHHHH---TTCCCCEEEECSTTSSHHHHH
T ss_pred cHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHH
Confidence 4455554443333 344445999999999999886
No 99
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=69.05 E-value=2.1 Score=47.06 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=29.5
Q ss_pred CChHHHHHhhHHHHHHHhcCC-ceeEeeeccCCCCCcccc
Q 001081 169 VGQAELFSDVQPFVQSALDGY-NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 169 asQeeVFe~V~PLV~svLdGy-N~~IFAYGQTGSGKTyTM 207 (1162)
..+++..+.+...+..++.|. ..+|+-||++|+|||+++
T Consensus 23 ~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 23 PFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 346667777766677766554 458999999999999876
No 100
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=69.01 E-value=2 Score=43.01 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=19.0
Q ss_pred HHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.+..+++|.| ++..++||||||.+.
T Consensus 31 ~i~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 31 ALPLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCCC--EEEECCCCChHHHHH
Confidence 4556678877 566789999999874
No 101
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=68.81 E-value=90 Score=30.45 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 001081 611 RDALIERLHEENEKLFDRLTEK 632 (1162)
Q Consensus 611 rd~~ieqL~eEneKL~~~l~~k 632 (1162)
..+.+|++..+|+-+-.++.++
T Consensus 90 a~ae~erlr~~~~~~~~r~~~~ 111 (121)
T 3mq7_A 90 ASAEVERLRRENQVLSVRIADK 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhhchhhhhHhhhc
Confidence 3345566666666666666555
No 102
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=67.92 E-value=1.6 Score=47.60 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=28.6
Q ss_pred eeeeceeeCCCCChHHHHHhh-HHHHH-HHhc----CCceeEeeeccCCCCCcccc
Q 001081 158 DFEFDRVYGPHVGQAELFSDV-QPFVQ-SALD----GYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 158 ~F~FDkVF~~~asQeeVFe~V-~PLV~-svLd----GyN~~IFAYGQTGSGKTyTM 207 (1162)
.++||.|.+.+..-+.+.+.+ .|+.. ..+. .....|+-||++|+|||+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 456777776444333344333 22111 1111 23456899999999999876
No 103
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=67.83 E-value=58 Score=37.92 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 452 KELYEREKEIQDLKQEILGLRQALKEAND 480 (1162)
Q Consensus 452 ~el~~l~~eI~eLk~Ei~~Lr~~L~~~~e 480 (1162)
+.....+..|++|+..+.++.+.-..+.+
T Consensus 31 kye~~V~~~l~~L~~~l~~isn~Ts~~~~ 59 (411)
T 3ghg_C 31 TYQTKVDKDLQSLEDILHQVENKTSEVKQ 59 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccchhhHHHHHHHHHHHHHhhhhHHHH
Confidence 33344566677777777666655444433
No 104
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=67.72 E-value=75 Score=36.55 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=16.5
Q ss_pred HHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 497 FTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQ 533 (1162)
Q Consensus 497 ~elq~~Lk~e~~~L~~k~k~~kEe~~qL~~ql~qllq 533 (1162)
.++-.+|+.....|+.++...-..+..|+..+.++..
T Consensus 112 ~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~ 148 (390)
T 1deq_A 112 KQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLV 148 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344445555555555544433344444444333333
No 105
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=67.71 E-value=1.7 Score=47.42 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=26.2
Q ss_pred CChHHHHHhhHHHHHHHhcC-CceeEeeeccCCCCCcccc
Q 001081 169 VGQAELFSDVQPFVQSALDG-YNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 169 asQeeVFe~V~PLV~svLdG-yN~~IFAYGQTGSGKTyTM 207 (1162)
..+++..+.+...+..++.| ...+++-||++|+|||+.+
T Consensus 23 ~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 23 PHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp TTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHH
Confidence 33555555554455544433 4568999999999999877
No 106
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=67.70 E-value=82 Score=36.22 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 541 QIQQRDSTIKTLQAKINSIESQRNE 565 (1162)
Q Consensus 541 qiqq~e~eIe~L~~eL~eLe~QL~e 565 (1162)
++++++.+|-.++.+|++++.|+++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555544443
No 107
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=67.01 E-value=95 Score=30.05 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 456 EREKEIQDLKQEILGLRQALKEAND 480 (1162)
Q Consensus 456 ~l~~eI~eLk~Ei~~Lr~~L~~~~e 480 (1162)
++......|..|++.++.++.....
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~~ 31 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQYA 31 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666555433
No 108
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=66.31 E-value=2.4 Score=45.28 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=28.1
Q ss_pred ceeeeceeeCCCCChHHHHHhhHHHHHH-----HhcCC----ceeEeeeccCCCCCcccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDVQPFVQS-----ALDGY----NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V~PLV~s-----vLdGy----N~~IFAYGQTGSGKTyTM 207 (1162)
..++||.|.+.+. +...+..++.. ++.+. ...|+-||++|||||+.+
T Consensus 35 ~~~~~~~i~g~~~----~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEE----AKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHH----HHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHH----HHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 4577888776543 33333333222 22221 123899999999999987
No 109
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=65.70 E-value=45 Score=32.60 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 456 EREKEIQDLKQEILGLRQALKEAN 479 (1162)
Q Consensus 456 ~l~~eI~eLk~Ei~~Lr~~L~~~~ 479 (1162)
+.+..|..|+.|+..|+..++...
T Consensus 12 ~rD~~Ie~Lkreie~lk~ele~l~ 35 (120)
T 3i00_A 12 EKDHLIERLYREISGLKAQLENMK 35 (120)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777766543
No 110
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=65.63 E-value=2.6 Score=43.81 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=20.5
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..+++|.| ++..++||||||.+.
T Consensus 58 ~~i~~~~~~~~--~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 58 QAIPVMLHGRE--LLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 45566778887 677889999999874
No 111
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=65.35 E-value=2.6 Score=46.41 Aligned_cols=41 Identities=39% Similarity=0.707 Sum_probs=26.8
Q ss_pred eeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 160 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 160 ~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.|+.+++ |.++.+.+...|. .|.-..++-||+.|+|||+++
T Consensus 23 ~~~~~~g----~~~~~~~L~~~i~---~g~~~~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 23 TLDEVYG----QNEVITTVRKFVD---EGKLPHLLFYGPPGTGKTSTI 63 (340)
T ss_dssp SGGGCCS----CHHHHHHHHHHHH---TTCCCCEEEECSSSSSHHHHH
T ss_pred cHHHhcC----cHHHHHHHHHHHh---cCCCceEEEECCCCCCHHHHH
Confidence 3566664 5666655544333 454333778999999999987
No 112
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=65.33 E-value=3 Score=45.41 Aligned_cols=44 Identities=25% Similarity=0.329 Sum_probs=31.4
Q ss_pred eeceeeCCCCChHHHHHhhHHHHHHHh--cCCceeEeeeccCCCCCcccc
Q 001081 160 EFDRVYGPHVGQAELFSDVQPFVQSAL--DGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 160 ~FDkVF~~~asQeeVFe~V~PLV~svL--dGyN~~IFAYGQTGSGKTyTM 207 (1162)
+|+.+.+ +..+.+.+..++..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG----~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIG----QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCC----hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 4555544 6677777766666664 344567999999999999876
No 113
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=64.51 E-value=1.8 Score=45.18 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=20.5
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..+++|.| ++..++||||||.+.
T Consensus 59 ~ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 59 RAIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 45666778877 677899999999874
No 114
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=64.02 E-value=2.9 Score=48.50 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=23.0
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
+++..++......|.-.|+||||||.||
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 4566666666778999999999999998
No 115
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=63.76 E-value=1.4e+02 Score=30.83 Aligned_cols=6 Identities=0% Similarity=0.141 Sum_probs=2.2
Q ss_pred HHHHHH
Q 001081 549 IKTLQA 554 (1162)
Q Consensus 549 Ie~L~~ 554 (1162)
+..++.
T Consensus 127 l~~lEK 132 (168)
T 3o0z_A 127 LNHSEK 132 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 116
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=63.50 E-value=79 Score=29.05 Aligned_cols=47 Identities=15% Similarity=0.139 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 511 ADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKIN 557 (1162)
Q Consensus 511 ~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~ 557 (1162)
+..++.+++++..+..+..++....+.+..++.++.++...-+.+|+
T Consensus 26 qmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 26 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555544444433333333333333334333344333
No 117
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=63.32 E-value=3.3 Score=40.01 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=22.2
Q ss_pred HHHHhhHHHHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 173 ELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 173 eVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
.....+...+..+.. .+..|+-||.+|+|||+...
T Consensus 11 ~~~~~l~~~~~~~~~-~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 11 AAIQEMNREVEAAAK-RTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp HHHHHHHHHHHHHHT-CSSCEEEEEETTCCHHHHHG
T ss_pred HHHHHHHHHHHHHhC-CCCcEEEECCCCccHHHHHH
Confidence 333444444444443 34457789999999998763
No 118
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=63.06 E-value=4 Score=43.95 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=29.2
Q ss_pred eeceeeCCCCChHHHHHhhHHHHHHHh--cCCceeEeeeccCCCCCcccc
Q 001081 160 EFDRVYGPHVGQAELFSDVQPFVQSAL--DGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 160 ~FDkVF~~~asQeeVFe~V~PLV~svL--dGyN~~IFAYGQTGSGKTyTM 207 (1162)
+|+.+.+ +..+...+..++..+. .+....|+-||++|+|||+..
T Consensus 10 ~~~~~ig----~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 10 TLDEYIG----QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp STTTCCS----CHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred cHHHhhC----HHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 4555554 4555555555555543 234567888999999999876
No 119
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=62.89 E-value=3.1 Score=42.92 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=19.5
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..+++|.| ++..++||||||.+.
T Consensus 54 ~~i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 54 QTIGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 34556678877 456689999999874
No 120
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=61.62 E-value=3.2 Score=42.22 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=19.6
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..+++|.| ++..++||||||.+.
T Consensus 43 ~~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 43 ECIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCchhhhh
Confidence 34566678877 566779999999865
No 121
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=61.49 E-value=2.6 Score=44.86 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=20.2
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.++..++.|.| ++..++||||||.+.
T Consensus 83 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 83 KSIRPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHHHHhCCCc--EEEEccCCCCchHHH
Confidence 45566677877 677899999999874
No 122
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=61.47 E-value=87 Score=30.24 Aligned_cols=9 Identities=11% Similarity=0.497 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 001081 553 QAKINSIES 561 (1162)
Q Consensus 553 ~~eL~eLe~ 561 (1162)
++++.+|..
T Consensus 107 eeEl~eLq~ 115 (119)
T 3ol1_A 107 EEEIQELQA 115 (119)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHH
Confidence 344444443
No 123
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=61.33 E-value=1.1e+02 Score=29.71 Aligned_cols=7 Identities=43% Similarity=0.681 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 001081 461 IQDLKQE 467 (1162)
Q Consensus 461 I~eLk~E 467 (1162)
|+.|+.|
T Consensus 47 iq~L~~e 53 (131)
T 3tnu_A 47 MQNLEIE 53 (131)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 124
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=61.30 E-value=3 Score=47.25 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=20.8
Q ss_pred HHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.+.+++.-..+.|.-.|+||||||.++
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHH
Confidence 344445455568899999999999998
No 125
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=61.25 E-value=3.4 Score=42.40 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=20.2
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..+++|.|+ +..++||||||.+.
T Consensus 49 ~~i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 49 QAWPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 456667788875 66789999999874
No 126
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=60.98 E-value=4.3 Score=40.45 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=22.2
Q ss_pred hHHHHHhhHHHHHHHhcCC-ceeEeeeccCCCCCcccc
Q 001081 171 QAELFSDVQPFVQSALDGY-NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 171 QeeVFe~V~PLV~svLdGy-N~~IFAYGQTGSGKTyTM 207 (1162)
++.+.+.+...+. .|. ...++-||++|+|||+.+
T Consensus 28 ~~~~~~~l~~~l~---~~~~~~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 28 QEHVLTALANGLS---LGRIHHAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp CHHHHHHHHHHHH---HTCCCSEEEEECSTTSCHHHHH
T ss_pred cHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHH
Confidence 4455554433333 233 347899999999999876
No 127
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=60.78 E-value=3.9 Score=45.34 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=26.0
Q ss_pred hHHHHHhhHHHH-HHHhcC---CceeEee--eccCCCCCcccc
Q 001081 171 QAELFSDVQPFV-QSALDG---YNVSIFA--YGQTHSGKTHTM 207 (1162)
Q Consensus 171 QeeVFe~V~PLV-~svLdG---yN~~IFA--YGQTGSGKTyTM 207 (1162)
.+.-.+.+...+ ..+..| ...+++- ||+.|+|||+.+
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 334444455555 666666 4567888 999999999887
No 128
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=59.95 E-value=4.9 Score=42.91 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=24.4
Q ss_pred ChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 170 GQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 170 sQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.|+++.+.+..++. .|....++-||++|+|||++.
T Consensus 29 g~~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 29 GQEHIVKRLKHYVK---TGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp SCHHHHHHHHHHHH---HTCCCEEEEESCTTSSHHHHH
T ss_pred CCHHHHHHHHHHHH---cCCCCeEEEECcCCCCHHHHH
Confidence 36666665544443 354445889999999999876
No 129
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=59.76 E-value=1.9 Score=43.22 Aligned_cols=24 Identities=46% Similarity=0.490 Sum_probs=18.1
Q ss_pred HHHHhcCCceeEeeeccCCCCCcccc
Q 001081 182 VQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 182 V~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
+..+++|.| ++..++||||||.+.
T Consensus 42 i~~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 42 AQPALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCCHHHHH
Confidence 344566766 566899999999986
No 130
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=59.43 E-value=1.3e+02 Score=29.14 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 001081 461 IQDLKQEILGLRQAL 475 (1162)
Q Consensus 461 I~eLk~Ei~~Lr~~L 475 (1162)
|.+|+..+..|+.++
T Consensus 38 i~elrr~iq~L~~el 52 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEI 52 (129)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 131
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=59.28 E-value=3.8 Score=42.78 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=19.5
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..+++|.| ++..++||||||.+.
T Consensus 52 ~~i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 52 NAIPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 34556778887 456679999999875
No 132
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=57.98 E-value=3.8 Score=47.69 Aligned_cols=39 Identities=26% Similarity=0.417 Sum_probs=27.8
Q ss_pred CChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 169 VGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 169 asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..|+.+......+...+-.|.-..|+-||++|+|||+..
T Consensus 29 vGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 29 IGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 347777754444444444566578999999999999876
No 133
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=57.87 E-value=4.6 Score=44.62 Aligned_cols=26 Identities=31% Similarity=0.569 Sum_probs=21.2
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..++.|.| ++..++||||||.+.
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHHH
Confidence 45677788988 577899999999874
No 134
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=57.53 E-value=5.3 Score=42.71 Aligned_cols=38 Identities=32% Similarity=0.326 Sum_probs=26.7
Q ss_pred ChHHHHHhhHHHHHHHhcCC------ceeEeeeccCCCCCcccc
Q 001081 170 GQAELFSDVQPFVQSALDGY------NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 170 sQeeVFe~V~PLV~svLdGy------N~~IFAYGQTGSGKTyTM 207 (1162)
.|..+.+.+...+.....|. ...++-||++|+|||++.
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHH
Confidence 46666666655555554332 357899999999999876
No 135
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=56.58 E-value=4.3 Score=44.33 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=21.1
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..++.|.+..++++++||||||.+.
T Consensus 121 ~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 121 NALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 3456677874445788999999999874
No 136
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=56.57 E-value=4.6 Score=41.72 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=19.2
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..+++|.| ++..++||||||.+.
T Consensus 53 ~~i~~~~~~~~--~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 53 KAIPLGRCGLD--LIVQAKSGTGKTCVF 78 (230)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 34556678887 456779999999873
No 137
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=56.54 E-value=5.6 Score=43.11 Aligned_cols=35 Identities=17% Similarity=0.038 Sum_probs=23.7
Q ss_pred ChHHHHHhhHHHHHHHhcCC-ceeEeeeccCCCCCcccc
Q 001081 170 GQAELFSDVQPFVQSALDGY-NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 170 sQeeVFe~V~PLV~svLdGy-N~~IFAYGQTGSGKTyTM 207 (1162)
.|+++...+...+. .|. ...++-||++|+|||+++
T Consensus 30 g~~~~~~~l~~~l~---~~~~~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 30 LPAFDKETFKSITS---KGKIPHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp CCHHHHHHHHHHHH---TTCCCSEEEECSSTTSSHHHHH
T ss_pred CcHHHHHHHHHHHH---cCCCCeEEEeeCcCCCCHHHHH
Confidence 45566555544443 343 356888999999999987
No 138
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=56.53 E-value=2e+02 Score=32.99 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 533 QLEQEQKMQIQQRDSTIKTLQAKINSIE 560 (1162)
Q Consensus 533 q~eeE~k~qiqq~e~eIe~L~~eL~eLe 560 (1162)
.+.+|+..+|..++.++++++.++++++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455556666666777777777776654
No 139
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=56.44 E-value=4.1 Score=42.47 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=18.8
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.++..+..|. .++..|+||||||..+
T Consensus 68 ~~i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 68 EILEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 3445556675 4677899999999765
No 140
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=56.16 E-value=4.1 Score=42.44 Aligned_cols=25 Identities=36% Similarity=0.348 Sum_probs=18.4
Q ss_pred HHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.+..+++|.|+ +..++||||||.+.
T Consensus 59 ~i~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 59 GWPVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEECCCcCHHHHHH
Confidence 44556688775 55679999999874
No 141
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=55.94 E-value=4.8 Score=42.49 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=19.4
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..+++|.| ++..++||||||.+.
T Consensus 72 ~~i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 72 EAIPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCCC--EEEEcCCCCCchhHh
Confidence 34566778877 455679999999874
No 142
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=55.79 E-value=5.1 Score=45.10 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=29.4
Q ss_pred ceeeeceeeCCCCChHHHHHhhHHHHHHHh------c---CCceeEeeeccCCCCCcccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDVQPFVQSAL------D---GYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V~PLV~svL------d---GyN~~IFAYGQTGSGKTyTM 207 (1162)
..+.||.+.+ ++.+.+.+..++...+ . .....|+-||++|+|||+..
T Consensus 110 ~~~~~~~iiG----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 110 TAVKFDDIAG----QDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCCGGGSCS----CHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCCChHHhCC----HHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 4567888877 4444444433322211 1 22357999999999999876
No 143
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=55.77 E-value=16 Score=43.40 Aligned_cols=19 Identities=37% Similarity=0.597 Sum_probs=16.1
Q ss_pred cCCceeEeeeccCCCCCcccc
Q 001081 187 DGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 187 dGyN~~IFAYGQTGSGKTyTM 207 (1162)
.|.+ |.-.|+||||||.||
T Consensus 259 ~g~~--i~I~GptGSGKTTlL 277 (511)
T 2oap_1 259 HKFS--AIVVGETASGKTTTL 277 (511)
T ss_dssp TTCC--EEEEESTTSSHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHH
Confidence 5665 677899999999987
No 144
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=55.61 E-value=9.8 Score=41.43 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=27.3
Q ss_pred ChHHHHHhhHHHHHHHhcCC-----ceeEeeeccCCCCCcccc
Q 001081 170 GQAELFSDVQPFVQSALDGY-----NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 170 sQeeVFe~V~PLV~svLdGy-----N~~IFAYGQTGSGKTyTM 207 (1162)
+-+++...+..++...+.|+ ...|+..|++|||||+..
T Consensus 8 s~~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 8 TDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 34555555566777777653 357899999999999865
No 145
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.49 E-value=19 Score=42.12 Aligned_cols=49 Identities=20% Similarity=0.317 Sum_probs=27.3
Q ss_pred eeeceeeCCCCChHHHHHhh-HHHHH-HHhc--C--CceeEeeeccCCCCCcccc
Q 001081 159 FEFDRVYGPHVGQAELFSDV-QPFVQ-SALD--G--YNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 159 F~FDkVF~~~asQeeVFe~V-~PLV~-svLd--G--yN~~IFAYGQTGSGKTyTM 207 (1162)
-+||.|=+-+.--+++.+.| .|+.. ..+. | .--.|+-||+.|+|||.+.
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHH
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHH
Confidence 45566655443333344433 23321 1222 3 2356999999999999754
No 146
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=55.43 E-value=2.8e+02 Score=33.01 Aligned_cols=21 Identities=10% Similarity=0.246 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001081 457 REKEIQDLKQEILGLRQALKE 477 (1162)
Q Consensus 457 l~~eI~eLk~Ei~~Lr~~L~~ 477 (1162)
++..+...+.|+++.+++-..
T Consensus 7 yq~~la~yq~elarvqkana~ 27 (497)
T 3iox_A 7 YQAKLTAYQTELARVQKANAD 27 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555444333
No 147
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=55.31 E-value=52 Score=29.87 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 521 NAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 564 (1162)
Q Consensus 521 ~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~ 564 (1162)
.+.|..++.++....+-++.++....+....++.++.+++.+++
T Consensus 32 k~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 32 KNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666666666666777777777777776554
No 148
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=54.90 E-value=5.6 Score=42.22 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=15.6
Q ss_pred ceeEeeeccCCCCCcccc
Q 001081 190 NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 190 N~~IFAYGQTGSGKTyTM 207 (1162)
...|+-||++|+|||++.
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457889999999999976
No 149
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=54.90 E-value=1.6e+02 Score=28.56 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 459 KEIQDLKQEILGLRQALKEANDQCV 483 (1162)
Q Consensus 459 ~eI~eLk~Ei~~Lr~~L~~~~eq~~ 483 (1162)
+.+.+|+..+..|+.++.....+..
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~ 27 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLE 27 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665555443
No 150
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=54.31 E-value=91 Score=36.25 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 542 IQQRDSTIKTLQAKINSIESQRNEA 566 (1162)
Q Consensus 542 iqq~e~eIe~L~~eL~eLe~QL~e~ 566 (1162)
|+.++..+..++.+|..|+.++.++
T Consensus 107 i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 107 IQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3334444444455555555544443
No 151
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=53.69 E-value=2.8e+02 Score=32.69 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001081 520 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEAL 567 (1162)
Q Consensus 520 e~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~ 567 (1162)
-..+|+.++..+......+-..|..+..-|+++..+|+.||.-+..++
T Consensus 112 ~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~ 159 (491)
T 1m1j_A 112 VSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKI 159 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555544444445566666677777777777776554433
No 152
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=53.08 E-value=4.7 Score=43.52 Aligned_cols=20 Identities=35% Similarity=0.322 Sum_probs=16.8
Q ss_pred CCceeEeeeccCCCCCcccc
Q 001081 188 GYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 188 GyN~~IFAYGQTGSGKTyTM 207 (1162)
.....+.-.|+||||||.++
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 34567888999999999998
No 153
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=52.93 E-value=6.8 Score=37.78 Aligned_cols=20 Identities=15% Similarity=0.504 Sum_probs=16.6
Q ss_pred CCceeEeeeccCCCCCcccc
Q 001081 188 GYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 188 GyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..|+-||.+|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45566899999999999865
No 154
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=52.75 E-value=3.3 Score=45.80 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=27.5
Q ss_pred eeeceeeCCCCChHHHHHhhHHHHH------HHhcCC---ceeEeeeccCCCCCcccc
Q 001081 159 FEFDRVYGPHVGQAELFSDVQPFVQ------SALDGY---NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 159 F~FDkVF~~~asQeeVFe~V~PLV~------svLdGy---N~~IFAYGQTGSGKTyTM 207 (1162)
.+||.|.+. +++-+.+...|. .++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~----~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGL----EGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSC----HHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCH----HHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 456777664 444444433332 233332 246888999999999876
No 155
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=52.43 E-value=3.5 Score=42.08 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=18.7
Q ss_pred HHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.+..+++|.|+ +..++||||||.+.
T Consensus 34 ~i~~~~~~~~~--lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 34 IIPGALRGESM--VGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHHHTCCE--EEECCSSHHHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 45566778774 56789999999873
No 156
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=52.32 E-value=1.4e+02 Score=27.71 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=24.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001081 596 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 632 (1162)
Q Consensus 596 d~a~lkkKLEEELkkrd~~ieqL~eEneKL~~~l~~k 632 (1162)
......+.++.+++..+.+++.+.++..++...+...
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666667777777777777777776666544
No 157
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=52.14 E-value=1.6e+02 Score=27.89 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 450 ARKELYEREKEIQDLKQEILGLRQAL 475 (1162)
Q Consensus 450 ~~~el~~l~~eI~eLk~Ei~~Lr~~L 475 (1162)
++.++..++.+......++..|...+
T Consensus 10 lre~l~~le~~~~~~~~e~~~L~~~l 35 (97)
T 2eqb_B 10 LKEDYNTLKRELSDRDDEVKRLREDI 35 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33334444444444444444444433
No 158
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=51.75 E-value=6 Score=43.53 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=21.8
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..++.|.+..++..++||||||.+.
T Consensus 54 ~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 54 NALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 4566777875566788899999999874
No 159
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=51.57 E-value=8 Score=42.27 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=24.6
Q ss_pred CChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 169 VGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 169 asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..|+++.+.+...+.. ......++-||+.|+|||+++
T Consensus 19 vg~~~~~~~L~~~l~~--~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 19 VGQEHVLTALANGLSL--GRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSCHHHHHHHHHHHHH--TCCCSEEEEESCTTSSHHHHH
T ss_pred cCcHHHHHHHHHHHHh--CCCCeEEEEECCCCCCHHHHH
Confidence 3466666655444432 223456889999999999886
No 160
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=51.47 E-value=5.7 Score=44.09 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=20.2
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..+++|.| ++..++||||||.+.
T Consensus 66 ~ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 66 RAIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCCchHHH
Confidence 45666788887 567789999999764
No 161
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=51.29 E-value=6.7 Score=41.85 Aligned_cols=51 Identities=22% Similarity=0.328 Sum_probs=29.0
Q ss_pred ceeeeceeeCCCCChHHHHHhh-HHHHH-HHhc---CCceeEeeeccCCCCCcccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDV-QPFVQ-SALD---GYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V-~PLV~-svLd---GyN~~IFAYGQTGSGKTyTM 207 (1162)
....|+.+.+.+..-..+.+.+ .|+.. ..+. .....|+-||++|+|||+..
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3466788777433333333322 22211 1122 23567999999999999876
No 162
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=51.25 E-value=5.9 Score=45.42 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=21.5
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHT 206 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyT 206 (1162)
..+..++.|.+..++..|+||||||..
T Consensus 121 ~ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 121 NALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 345666777667789999999999977
No 163
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=50.98 E-value=7.5 Score=42.67 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=24.0
Q ss_pred HHHHHHHhcCC---ceeEeeeccCCCCCcccc
Q 001081 179 QPFVQSALDGY---NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 179 ~PLV~svLdGy---N~~IFAYGQTGSGKTyTM 207 (1162)
...+..+++|. .-||+-||+.|+|||+..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 45677888887 448999999999999876
No 164
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=50.83 E-value=1e+02 Score=27.72 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 001081 548 TIKTLQAKINSIE 560 (1162)
Q Consensus 548 eIe~L~~eL~eLe 560 (1162)
++..|+.++..++
T Consensus 42 ev~~L~kKiq~lE 54 (81)
T 1ic2_A 42 ELVALQKKLKGTE 54 (81)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 165
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=50.82 E-value=6.1 Score=43.04 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=20.8
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..++.|.+..++..++||||||.+.
T Consensus 34 ~~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 34 RALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 3456667774455788899999999864
No 166
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=50.67 E-value=1.8e+02 Score=29.59 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001081 460 EIQDLKQEILGLRQALKEA 478 (1162)
Q Consensus 460 eI~eLk~Ei~~Lr~~L~~~ 478 (1162)
.|..|+.|+..++..+...
T Consensus 69 ~I~~L~~El~~l~~ki~dL 87 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRL 87 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555554444433
No 167
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=50.40 E-value=3.4 Score=43.96 Aligned_cols=41 Identities=27% Similarity=0.403 Sum_probs=25.6
Q ss_pred eeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 160 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 160 ~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.|+.+.+ |+++.+.+...+. .|....++-||++|+|||++.
T Consensus 15 ~~~~~~g----~~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 15 TLDEVVG----QDEVIQRLKGYVE---RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SGGGSCS----CHHHHHHHHTTTT---TTCCCCEEEESSSSSSHHHHH
T ss_pred CHHHHhC----CHHHHHHHHHHHh---CCCCCeEEEECcCCcCHHHHH
Confidence 3555443 5555554433332 354444899999999999876
No 168
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=49.68 E-value=7 Score=43.64 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=29.0
Q ss_pred eeeeceeeCCCCChHHHHHhhHHHHHHH---------hcCCceeEeeeccCCCCCcccc
Q 001081 158 DFEFDRVYGPHVGQAELFSDVQPFVQSA---------LDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 158 ~F~FDkVF~~~asQeeVFe~V~PLV~sv---------LdGyN~~IFAYGQTGSGKTyTM 207 (1162)
...||.+.+ ++.+.+.+..+|... +.+....|+-||++|+|||+..
T Consensus 80 ~~~~~~i~G----~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAG----VEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCS----CHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCC----hHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 345676665 445555443333321 2244567999999999999876
No 169
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=48.65 E-value=1.3e+02 Score=27.51 Aligned_cols=32 Identities=13% Similarity=0.090 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001081 598 SAVSKKLEEELKKRDALIERLHEENEKLFDRL 629 (1162)
Q Consensus 598 a~lkkKLEEELkkrd~~ieqL~eEneKL~~~l 629 (1162)
....+.++.+++..+.+++.+.++..++...+
T Consensus 71 ~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 71 QEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555544
No 170
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=48.64 E-value=2.3e+02 Score=28.77 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001081 464 LKQEILGLRQALKEANDQCVLLY 486 (1162)
Q Consensus 464 Lk~Ei~~Lr~~L~~~~eq~~~l~ 486 (1162)
+..++.+-......++.++..+.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLE 48 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELE 48 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333
No 171
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=48.42 E-value=6.9 Score=41.69 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=18.5
Q ss_pred HHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.+..+++|.| ++..++||||||.+.
T Consensus 24 ~i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 24 TIPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 3455667876 556789999999865
No 172
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=48.40 E-value=6.3 Score=43.47 Aligned_cols=26 Identities=27% Similarity=0.439 Sum_probs=19.7
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..+++|.+ ++..++||||||.+.
T Consensus 50 ~~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 50 EAIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 44566677877 567789999999764
No 173
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=47.91 E-value=6.6 Score=41.85 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=30.2
Q ss_pred eeeceeeCCCCChHHH----HHhh-----HHHHHHHhcC--CceeEeeeccCCCCCccccc
Q 001081 159 FEFDRVYGPHVGQAEL----FSDV-----QPFVQSALDG--YNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 159 F~FDkVF~~~asQeeV----Fe~V-----~PLV~svLdG--yN~~IFAYGQTGSGKTyTM~ 208 (1162)
..|++|++...-..-+ |+.+ -..+..++.| +.-|++-||+.|+|||+...
T Consensus 16 ~~~~~~~~~~~w~~I~~~l~yq~~~~~~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 16 FRCSKIDEGGDWRPIVQFLRYQQIEFITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHTSCSCCCSHHHHHHHHHTTCCHHHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHccCCCCHHHHHHHHHHcCcCHHHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 3466666655432221 3322 2334555666 33579999999999998863
No 174
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=47.20 E-value=7.7 Score=45.93 Aligned_cols=27 Identities=37% Similarity=0.316 Sum_probs=18.7
Q ss_pred HHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
+++.+..|.+.++++ ++||||||.++.
T Consensus 190 ~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 190 AVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 344444576655554 999999999973
No 175
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=46.42 E-value=9.6 Score=42.06 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=27.6
Q ss_pred eeceeeCCCCChHHHHHhhHHHHHHHh-cC-CceeEeeeccCCCCCcccc
Q 001081 160 EFDRVYGPHVGQAELFSDVQPFVQSAL-DG-YNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 160 ~FDkVF~~~asQeeVFe~V~PLV~svL-dG-yN~~IFAYGQTGSGKTyTM 207 (1162)
+|+.+++ |..+.+.+.-.|.... .| .-..++-||++|+|||+.+
T Consensus 23 ~l~~~~g----~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 23 SLDEFIG----QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHH
T ss_pred cHHHccC----cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHH
Confidence 4666665 4566666554444322 22 2234677999999999987
No 176
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=46.23 E-value=7.2 Score=41.07 Aligned_cols=25 Identities=28% Similarity=0.085 Sum_probs=18.2
Q ss_pred HHHHhcCCceeEeeeccCCCCCccccc
Q 001081 182 VQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 182 V~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
+..++++.+ ++.+|+||+|||+...
T Consensus 102 i~~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 102 LERWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHHHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCCCHHHHHH
Confidence 344566665 5667899999999863
No 177
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=46.20 E-value=7.8 Score=42.89 Aligned_cols=26 Identities=27% Similarity=0.288 Sum_probs=19.7
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.++..+++|.|+ +..++||||||.+.
T Consensus 44 ~~i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 44 HAIPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHccCCCE--EEEcCCCCHHHHHH
Confidence 345566788874 56789999999865
No 178
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=45.80 E-value=7.3 Score=42.23 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=19.1
Q ss_pred HHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
+...+..|....++-||++|+|||+++
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 333344554344888999999999887
No 179
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.67 E-value=2.6e+02 Score=28.46 Aligned_cols=23 Identities=17% Similarity=0.456 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001081 538 QKMQIQQRDSTIKTLQAKINSIE 560 (1162)
Q Consensus 538 ~k~qiqq~e~eIe~L~~eL~eLe 560 (1162)
++.++.+.+..++.++..+.+|+
T Consensus 120 L~~ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 120 LTEQLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555554
No 180
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=45.02 E-value=8.3 Score=42.23 Aligned_cols=46 Identities=20% Similarity=0.326 Sum_probs=27.6
Q ss_pred eeeeceeeCCCCChHHHHHhhHHHHH------HHhcCC---ceeEeeeccCCCCCcccc
Q 001081 158 DFEFDRVYGPHVGQAELFSDVQPFVQ------SALDGY---NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 158 ~F~FDkVF~~~asQeeVFe~V~PLV~------svLdGy---N~~IFAYGQTGSGKTyTM 207 (1162)
..+|+.|.+ ++++-+.+..+|. ..+.+. ...|+-||++|+|||+..
T Consensus 14 ~~~~~di~G----~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAG----LEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCS----CHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcC----hHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 355777766 4444444333221 122222 346899999999999876
No 181
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=44.94 E-value=5.9 Score=42.26 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=17.3
Q ss_pred HHHHhcCCceeEeeeccCCCCCccccc
Q 001081 182 VQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 182 V~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
+..++.|.++.| .++||||||.+..
T Consensus 122 i~~~l~~~~~ll--~~~tGsGKT~~~~ 146 (282)
T 1rif_A 122 VFEGLVNRRRIL--NLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHHHHSEEEE--CCCTTSCHHHHHH
T ss_pred HHHHHhcCCeEE--EcCCCCCcHHHHH
Confidence 344455555433 8999999998863
No 182
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=44.85 E-value=2.7e+02 Score=28.37 Aligned_cols=30 Identities=3% Similarity=0.085 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001081 540 MQIQQRDSTIKTLQAKINSIESQRNEALHS 569 (1162)
Q Consensus 540 ~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s 569 (1162)
.+..++...+..-...+..+..|+..++..
T Consensus 115 ~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v 144 (154)
T 2ocy_A 115 ILNKRLTEQLREKDTLLDTLTLQLKNLKKV 144 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555556666666666555443
No 183
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=44.56 E-value=6.1 Score=44.81 Aligned_cols=27 Identities=30% Similarity=0.195 Sum_probs=20.1
Q ss_pred HHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.+..+.-.....|.-.|+||||||.++
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 344443344567889999999999998
No 184
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=44.35 E-value=5.6 Score=44.50 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=27.5
Q ss_pred eeeeceeeCCCCChHHHHHhh-HHHHH-HHhcCC---ceeEeeeccCCCCCcccc
Q 001081 158 DFEFDRVYGPHVGQAELFSDV-QPFVQ-SALDGY---NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 158 ~F~FDkVF~~~asQeeVFe~V-~PLV~-svLdGy---N~~IFAYGQTGSGKTyTM 207 (1162)
..+|+.|.+.+..-..+.+.+ .|+-. ..+.+. ...|+-||++|+|||+..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 356777766443333333332 22111 222221 235888999999999876
No 185
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=44.16 E-value=96 Score=29.65 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 450 ARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQK 491 (1162)
Q Consensus 450 ~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk 491 (1162)
+......++.+-..|.-+|.-|+..+.+.++....+..+..+
T Consensus 14 AMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~e 55 (103)
T 4h22_A 14 AMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEE 55 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444667777788888888888887777666555444443
No 186
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=43.88 E-value=1.1e+02 Score=35.71 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 517 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 563 (1162)
Q Consensus 517 ~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL 563 (1162)
+.+++.+++..+.........++..+...+.+|+.|++++.+|+.+.
T Consensus 89 ml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 89 IIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 33344444443333333444444555556677777777777776544
No 187
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=43.72 E-value=4.7 Score=44.01 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=24.9
Q ss_pred eeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 160 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 160 ~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
+||.+.+ |+++.+.+...+. -.|.-..++-||++|+|||+++
T Consensus 12 ~~~~~vg----~~~~~~~l~~~~~--~~~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 12 SLNALSH----NEELTNFLKSLSD--QPRDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp SGGGCCS----CHHHHHHHHTTTT--CTTCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhcC----CHHHHHHHHHHHh--hCCCCCeEEEECCCCCCHHHHH
Confidence 3555553 5555554433321 1232222788999999999987
No 188
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=43.71 E-value=1.6e+02 Score=26.88 Aligned_cols=39 Identities=21% Similarity=0.150 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 519 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKIN 557 (1162)
Q Consensus 519 Ee~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~ 557 (1162)
.++.+++.......+.++++-.--..++.+|..|+.-++
T Consensus 42 ~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 42 REMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 334444444444444444333322345677777776654
No 189
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=43.32 E-value=8.5 Score=43.02 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=19.5
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..+++|.| ++..++||||||...
T Consensus 28 ~~i~~i~~~~~--~lv~apTGsGKT~~~ 53 (414)
T 3oiy_A 28 LWAKRIVQGKS--FTMVAPTGVGKTTFG 53 (414)
T ss_dssp HHHHHHTTTCC--EECCSCSSSSHHHHH
T ss_pred HHHHHHhcCCC--EEEEeCCCCCHHHHH
Confidence 34555678876 578899999999843
No 190
>3m50_P N.plumbaginifolia H+-translocating ATPase mRNA; all helical, protein-protein complex, protein binding; HET: EBT; 2.60A {Nicotiana plumbaginifolia} PDB: 3m51_P* 4dx0_P*
Probab=42.28 E-value=9 Score=29.25 Aligned_cols=17 Identities=24% Similarity=0.604 Sum_probs=15.0
Q ss_pred hhhhccccccccccccc
Q 001081 852 VLRMRGIDQDTWRHQVT 868 (1162)
Q Consensus 852 ~~~~~~~~~~~~~~~~~ 868 (1162)
|-|++|+|.|+-+||-|
T Consensus 14 v~KLKglDi~~i~~~yT 30 (31)
T 3m50_P 14 VVKLKGLDIETIQQSYD 30 (31)
T ss_dssp HHHHTTCCSCCCCCCCC
T ss_pred HHHHhcCChhhhhhccc
Confidence 56899999999999876
No 191
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=41.97 E-value=2.2e+02 Score=26.53 Aligned_cols=12 Identities=17% Similarity=0.338 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 001081 549 IKTLQAKINSIE 560 (1162)
Q Consensus 549 Ie~L~~eL~eLe 560 (1162)
....+.++..|.
T Consensus 81 ~~~AE~evasLn 92 (101)
T 3u59_A 81 ATDAEAEVASLN 92 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333343333
No 192
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=41.76 E-value=2.6e+02 Score=27.32 Aligned_cols=28 Identities=11% Similarity=0.260 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 537 EQKMQIQQRDSTIKTLQAKINSIESQRN 564 (1162)
Q Consensus 537 E~k~qiqq~e~eIe~L~~eL~eLe~QL~ 564 (1162)
+++.+|..+++++++...++++|+.+..
T Consensus 75 eLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 75 ELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 3344444445555555555555554443
No 193
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=41.75 E-value=62 Score=29.15 Aligned_cols=16 Identities=31% Similarity=0.619 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 001081 541 QIQQRDSTIKTLQAKI 556 (1162)
Q Consensus 541 qiqq~e~eIe~L~~eL 556 (1162)
++.+++.+|..|+.++
T Consensus 48 ~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 48 ELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 194
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=41.68 E-value=9.5 Score=44.56 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=20.6
Q ss_pred HHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.+..++.|.+..++..++||||||.+.
T Consensus 149 ai~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 149 ALPLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp SHHHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHHHcCCCCCEEEECCCCccHHHHH
Confidence 456667774456788899999999874
No 195
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.24 E-value=8.9 Score=40.84 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=22.5
Q ss_pred ChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 170 GQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 170 sQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.|+.+.+.+...+ -.|.-..++-||+.|+|||++.
T Consensus 25 g~~~~~~~l~~~l---~~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 25 GNKETIDRLQQIA---KDGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp SCTHHHHHHHHHH---HSCCCCCEEEECSTTSSHHHHH
T ss_pred CCHHHHHHHHHHH---HcCCCCeEEEECcCCCCHHHHH
Confidence 3555555443333 3444334888999999999876
No 196
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=41.12 E-value=1.3e+02 Score=26.96 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=43.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001081 55 EISKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLA 108 (1162)
Q Consensus 55 ~~~~~~~~~~l~~l~~~l~~~k~~~~~lrqe~~el~e~~~~k~~~~~~~~~~L~ 108 (1162)
|..++.|..+|..++..+...+.+-..++.+++.+.+....|+..+..+..-|+
T Consensus 13 E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~La 66 (72)
T 3cve_A 13 EIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLA 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 556788888888888888888888888888888888888888877766655444
No 197
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=41.07 E-value=96 Score=29.50 Aligned_cols=29 Identities=10% Similarity=0.267 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 537 EQKMQIQQRDSTIKTLQAKINSIESQRNE 565 (1162)
Q Consensus 537 E~k~qiqq~e~eIe~L~~eL~eLe~QL~e 565 (1162)
..+.+|..++.+.+.|.++++.|+.++..
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777888888888888754
No 198
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=40.97 E-value=2.5e+02 Score=26.98 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001081 544 QRDSTIKTLQAKINSIES 561 (1162)
Q Consensus 544 q~e~eIe~L~~eL~eLe~ 561 (1162)
+++.+++.|+++|.=|+.
T Consensus 87 dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 87 DLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555554443
No 199
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=40.86 E-value=5.9 Score=42.84 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=24.6
Q ss_pred eeeeceeeCCCCChHHHHHhh-HHHHH-HHhcCCc----eeEeeeccCCCCCcccc
Q 001081 158 DFEFDRVYGPHVGQAELFSDV-QPFVQ-SALDGYN----VSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 158 ~F~FDkVF~~~asQeeVFe~V-~PLV~-svLdGyN----~~IFAYGQTGSGKTyTM 207 (1162)
..+|+.|-+.+...+++.+.+ .|+-. .++++.+ ..|+-||+.|+|||+.+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 355666655444444444432 33321 2233222 12889999999999876
No 200
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=40.76 E-value=2.6e+02 Score=28.26 Aligned_cols=30 Identities=7% Similarity=0.302 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHhh
Q 001081 539 KMQIQQRDSTIKTLQAKINS---IESQRNEALH 568 (1162)
Q Consensus 539 k~qiqq~e~eIe~L~~eL~e---Le~QL~e~~~ 568 (1162)
+.++.+.+...+.+++++.. ++++|+..+.
T Consensus 113 ~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~ 145 (152)
T 4fla_A 113 KDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQ 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444433 3334444333
No 201
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=40.76 E-value=11 Score=41.19 Aligned_cols=33 Identities=9% Similarity=0.158 Sum_probs=22.1
Q ss_pred HHHhhHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 174 LFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 174 VFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
....+...+..+. ..+..|+-||.+|+|||+..
T Consensus 10 ~~~~~~~~~~~~a-~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 10 AMQHLLNEIAMVA-PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp HHHHHHHHHHHHC-STTSCEEEESCTTSCHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCcEEEECCCCchHHHHH
Confidence 3344444444443 45677899999999999865
No 202
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=40.71 E-value=7.5 Score=48.63 Aligned_cols=42 Identities=26% Similarity=0.342 Sum_probs=27.1
Q ss_pred eeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 160 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 160 ~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
.||.|++ +++. +..+++-+..+....++-||++|+|||+.+.
T Consensus 168 ~ld~viG----r~~~---i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 168 KLDPVIG----RDEE---IRRVIQILLRRTKNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CSCCCCS----CHHH---HHHHHHHHHCSSCCCCEEEECTTSCHHHHHH
T ss_pred CCcccCC----cHHH---HHHHHHHHhcCCCCceEEEcCCCCCHHHHHH
Confidence 4555554 3333 3344444445655567889999999999884
No 203
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=40.60 E-value=10 Score=41.43 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=19.6
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..++.|.| ++..++||||||.+.
T Consensus 37 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 37 ECIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 45566778877 566679999999865
No 204
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=40.49 E-value=4.7e+02 Score=29.91 Aligned_cols=27 Identities=30% Similarity=0.182 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 453 ELYEREKEIQDLKQEILGLRQALKEAN 479 (1162)
Q Consensus 453 el~~l~~eI~eLk~Ei~~Lr~~L~~~~ 479 (1162)
+.+.+-.+.....+|+..-+.++++..
T Consensus 141 ~~~~~~~~~~~~~~e~~~k~~a~~af~ 167 (373)
T 3hhm_B 141 EYDRLYEEYTRTSQEIQMKRTAIEAFN 167 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 334444555555566655555554433
No 205
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=40.48 E-value=12 Score=43.65 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=21.4
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.++..++.|.+-.++..++||||||.+.
T Consensus 101 ~~i~~~l~~~~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 101 KTIKPILSSEDHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp HHHHHHHSSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCCCccHHH
Confidence 4566677665566788999999999874
No 206
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=40.40 E-value=14 Score=45.54 Aligned_cols=38 Identities=34% Similarity=0.337 Sum_probs=27.8
Q ss_pred ChHHHHHhhHHHHHHHhcCCc------eeEeeeccCCCCCcccc
Q 001081 170 GQAELFSDVQPFVQSALDGYN------VSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 170 sQeeVFe~V~PLV~svLdGyN------~~IFAYGQTGSGKTyTM 207 (1162)
.|.++.+.+...+..+..|.. +.|+-||++|+|||++.
T Consensus 495 Gq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 495 GQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELA 538 (758)
T ss_dssp SCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 466776666666666655543 36999999999999876
No 207
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=40.13 E-value=11 Score=43.07 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=20.2
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..++.|.| +++.++||||||...
T Consensus 85 ~ai~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 85 CSIPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHhcCCC--EEEECCCCCCchHHH
Confidence 45666788887 577789999999865
No 208
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=40.00 E-value=11 Score=41.69 Aligned_cols=18 Identities=39% Similarity=0.425 Sum_probs=15.2
Q ss_pred ceeEeeeccCCCCCcccc
Q 001081 190 NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 190 N~~IFAYGQTGSGKTyTM 207 (1162)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 356888999999999875
No 209
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=39.82 E-value=6 Score=45.77 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=29.0
Q ss_pred ceeeeceeeCCCCChHHHHHhhHHHHH------HHhcC---CceeEeeeccCCCCCcccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDVQPFVQ------SALDG---YNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V~PLV~------svLdG---yN~~IFAYGQTGSGKTyTM 207 (1162)
....|+.|.+ ++++.+.+...|. .++.| ....|+-||++|+|||+..
T Consensus 129 ~~~~~~di~G----~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVAG----LEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSCS----CHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcC----HHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 3456777766 4455554433332 22333 2346888999999999876
No 210
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=39.76 E-value=9.1 Score=45.12 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=16.6
Q ss_pred CCceeEeeeccCCCCCcccc
Q 001081 188 GYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 188 GyN~~IFAYGQTGSGKTyTM 207 (1162)
.....|+-||++|+|||+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHH
Confidence 34567999999999999876
No 211
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=39.73 E-value=7.6 Score=42.28 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=14.3
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
.|+-||++|+|||+..
T Consensus 48 ~vll~G~pGtGKT~la 63 (331)
T 2r44_A 48 HILLEGVPGLAKTLSV 63 (331)
T ss_dssp CEEEESCCCHHHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 5778999999999987
No 212
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=39.70 E-value=1.4e+02 Score=27.25 Aligned_cols=54 Identities=11% Similarity=0.159 Sum_probs=43.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001081 55 EISKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLA 108 (1162)
Q Consensus 55 ~~~~~~~~~~l~~l~~~l~~~k~~~~~lrqe~~el~e~~~~k~~~~~~~~~~L~ 108 (1162)
|..++.|..+|..++..+.-.+.+-..++.+++.+.+....|+..+..+..-|+
T Consensus 19 E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLa 72 (79)
T 3cvf_A 19 ETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLA 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 567888888888888888888888888888888888888888877766554443
No 213
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=39.54 E-value=1.2e+02 Score=30.30 Aligned_cols=19 Identities=16% Similarity=0.515 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001081 542 IQQRDSTIKTLQAKINSIE 560 (1162)
Q Consensus 542 iqq~e~eIe~L~~eL~eLe 560 (1162)
+.+.+.-++.++..+.+|+
T Consensus 112 l~e~e~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 112 LREKDMLLDTLTLQLKNLK 130 (135)
T ss_dssp TTHHHHCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444443
No 214
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=39.50 E-value=11 Score=38.49 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=21.6
Q ss_pred HHHHHHhcC---CceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDG---YNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdG---yN~~IFAYGQTGSGKTyTM 207 (1162)
+-++.++.| ....+.-+|++|||||+.+
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 457777754 2457888999999999887
No 215
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=39.40 E-value=1.7e+02 Score=29.38 Aligned_cols=19 Identities=5% Similarity=0.289 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001081 544 QRDSTIKTLQAKINSIESQ 562 (1162)
Q Consensus 544 q~e~eIe~L~~eL~eLe~Q 562 (1162)
..+.++..|+.+|..+-..
T Consensus 98 ~aE~k~~eLEeeL~~~~~n 116 (147)
T 2b9c_A 98 LSEGKCAELEEELKTVTNN 116 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 216
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=39.31 E-value=1.6e+02 Score=27.74 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 001081 458 EKEIQDLKQEILGLR 472 (1162)
Q Consensus 458 ~~eI~eLk~Ei~~Lr 472 (1162)
..+|.+|++++..++
T Consensus 22 q~~id~lke~~~q~~ 36 (94)
T 3jsv_C 22 QELIDKLKEEAEQHK 36 (94)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 217
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=38.72 E-value=12 Score=42.95 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=19.1
Q ss_pred HHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.+..++.|.| ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 4556678877 466789999999875
No 218
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=38.51 E-value=21 Score=37.64 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=20.3
Q ss_pred HHHHHHHhcCCc-----eeEeeeccCCCCCcccc
Q 001081 179 QPFVQSALDGYN-----VSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 179 ~PLV~svLdGyN-----~~IFAYGQTGSGKTyTM 207 (1162)
..++..++.|+. ..|+-.|+.|||||+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 16 ARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp HHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHH
T ss_pred HHHHHHHHccCCcccCCeEEEEECCCCCCHHHHH
Confidence 445555554433 46899999999999754
No 219
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=38.36 E-value=2.5e+02 Score=26.08 Aligned_cols=20 Identities=20% Similarity=0.067 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001081 457 REKEIQDLKQEILGLRQALK 476 (1162)
Q Consensus 457 l~~eI~eLk~Ei~~Lr~~L~ 476 (1162)
+=..++.|++++..|..++.
T Consensus 21 yIdKVR~LEqqN~~Le~~i~ 40 (93)
T 3s4r_A 21 LIDKVRFLEQQNKILLAELE 40 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445556666665555543
No 220
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=38.27 E-value=1.1e+02 Score=27.55 Aligned_cols=26 Identities=8% Similarity=0.184 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 540 MQIQQRDSTIKTLQAKINSIESQRNE 565 (1162)
Q Consensus 540 ~qiqq~e~eIe~L~~eL~eLe~QL~e 565 (1162)
..|.+++..+.....+|.+|..++..
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666655543
No 221
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=38.25 E-value=16 Score=44.51 Aligned_cols=46 Identities=28% Similarity=0.425 Sum_probs=31.9
Q ss_pred eeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccccc
Q 001081 159 FEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG 209 (1162)
Q Consensus 159 F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~G 209 (1162)
|.+... .|...|..-+.. +++.+-.|... ....|.|||||||||..
T Consensus 2 ~~~~~~-~~~~~q~~ai~~---l~~~~~~~~~~-~~l~g~tgs~kt~~~a~ 47 (664)
T 1c4o_A 2 FRYRGP-SPKGDQPKAIAG---LVEALRDGERF-VTLLGATGTGKTVTMAK 47 (664)
T ss_dssp CCCCSC-CCCTTHHHHHHH---HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred CCCCCC-CCCCCChHHHHH---HHHHHhcCCCc-EEEEcCCCcHHHHHHHH
Confidence 444443 788888877654 45666667533 34579999999999953
No 222
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=38.21 E-value=2.4e+02 Score=25.84 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 001081 544 QRDSTIKTLQAKINS 558 (1162)
Q Consensus 544 q~e~eIe~L~~eL~e 558 (1162)
.++.+++.|+.+|.=
T Consensus 67 dLE~kvesL~eEl~f 81 (86)
T 3swk_A 67 DLERKVESLQEEIAF 81 (86)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555555443
No 223
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=37.99 E-value=17 Score=44.55 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=27.0
Q ss_pred ChHHHHHhhHHHHHHHhcCCc------eeEeeeccCCCCCcccc
Q 001081 170 GQAELFSDVQPFVQSALDGYN------VSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 170 sQeeVFe~V~PLV~svLdGyN------~~IFAYGQTGSGKTyTM 207 (1162)
.|.++-+.+...+.....|.. +.|+-||++|+|||++.
T Consensus 462 g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 462 GQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHH
Confidence 456666656555555555543 57999999999999876
No 224
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=37.91 E-value=20 Score=40.12 Aligned_cols=18 Identities=39% Similarity=0.399 Sum_probs=15.7
Q ss_pred ceeEeeeccCCCCCcccc
Q 001081 190 NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 190 N~~IFAYGQTGSGKTyTM 207 (1162)
...|.-.|++|||||.|+
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457888999999999988
No 225
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=37.89 E-value=11 Score=42.00 Aligned_cols=18 Identities=39% Similarity=0.438 Sum_probs=15.6
Q ss_pred ceeEeeeccCCCCCcccc
Q 001081 190 NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 190 N~~IFAYGQTGSGKTyTM 207 (1162)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456899999999999876
No 226
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=37.89 E-value=7.5 Score=42.51 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=19.6
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..++.|.+ ++..++||||||.+.
T Consensus 50 ~~i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 50 RAIMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 44566677877 456789999999874
No 227
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=37.82 E-value=16 Score=44.02 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=20.5
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.+|..+++|.| ++..++||||||.+.
T Consensus 51 ~~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 51 ETINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHHcCCC--EEEEECCCChHHHHH
Confidence 45666788988 577889999999764
No 228
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=37.75 E-value=9.2 Score=44.99 Aligned_cols=44 Identities=16% Similarity=0.256 Sum_probs=28.3
Q ss_pred eeceeeCCCCChHHHHHhhHHHHHHHh----cC----------CceeEeeeccCCCCCcccc
Q 001081 160 EFDRVYGPHVGQAELFSDVQPFVQSAL----DG----------YNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 160 ~FDkVF~~~asQeeVFe~V~PLV~svL----dG----------yN~~IFAYGQTGSGKTyTM 207 (1162)
+|+.+.+ |+.+.+.+...+.... .| ....++-||++|+|||++.
T Consensus 37 ~~~dliG----~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 37 NLQQVCG----NKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHH
T ss_pred CHHHhcC----CHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHH
Confidence 4566554 5556655555554432 11 2357888999999999987
No 229
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.72 E-value=2.7e+02 Score=26.37 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 446 IANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQK 491 (1162)
Q Consensus 446 i~~~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elqk 491 (1162)
-+..+..++...+.++..|..++..-+.....++.....+..|+.+
T Consensus 13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEe 58 (97)
T 2eqb_B 13 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVED 58 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555566666666666666665555555555555555544
No 230
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=37.52 E-value=2.6e+02 Score=26.09 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 457 REKEIQDLKQEILGLRQALKEANDQ 481 (1162)
Q Consensus 457 l~~eI~eLk~Ei~~Lr~~L~~~~eq 481 (1162)
+..++..|+.+-..|...|...+.+
T Consensus 9 l~~eL~~l~~eE~~L~~eL~~lEke 33 (96)
T 3q8t_A 9 LQRELKELALEEERLIQELEDVEKN 33 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444333
No 231
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=37.36 E-value=16 Score=45.67 Aligned_cols=37 Identities=30% Similarity=0.308 Sum_probs=27.0
Q ss_pred hHHHHHhhHHHHHHHhcCCc------eeEeeeccCCCCCcccc
Q 001081 171 QAELFSDVQPFVQSALDGYN------VSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 171 QeeVFe~V~PLV~svLdGyN------~~IFAYGQTGSGKTyTM 207 (1162)
|..+...+...|..+..|.. +.|+-||++|+|||++.
T Consensus 563 ~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 563 QDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 605 (854)
T ss_dssp CHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHH
T ss_pred cHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 56666666666666655522 68999999999999876
No 232
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=37.28 E-value=12 Score=45.18 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=18.5
Q ss_pred HHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.|..++..... .+-.|+.|||||+|+
T Consensus 197 AV~~al~~~~~-~lI~GPPGTGKT~ti 222 (646)
T 4b3f_X 197 AVLFALSQKEL-AIIHGPPGTGKTTTV 222 (646)
T ss_dssp HHHHHHHCSSE-EEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCc-eEEECCCCCCHHHHH
Confidence 45556644333 456799999999997
No 233
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=37.03 E-value=20 Score=39.53 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=15.1
Q ss_pred eeEeeeccCCCCCcccc
Q 001081 191 VSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 191 ~~IFAYGQTGSGKTyTM 207 (1162)
.+|.-.|++|||||.|+
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 46788999999999998
No 234
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=36.89 E-value=2.3e+02 Score=25.86 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001081 544 QRDSTIKTLQAKINSIE 560 (1162)
Q Consensus 544 q~e~eIe~L~~eL~eLe 560 (1162)
..+..|+.|+.+.++|+
T Consensus 57 ~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 57 EVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 235
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=36.72 E-value=3.3e+02 Score=27.08 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhc
Q 001081 615 IERLHEENEKLFDRLT 630 (1162)
Q Consensus 615 ieqL~eEneKL~~~l~ 630 (1162)
-+.|+-||+.+.+++.
T Consensus 142 FE~LkvENE~vkerl~ 157 (167)
T 4gkw_A 142 FEKLSMENENLKEKIA 157 (167)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHhHHHHHH
Confidence 4678888999888884
No 236
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=36.63 E-value=14 Score=42.32 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=18.6
Q ss_pred HHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.+..++.|.| ++..++||||||.+.
T Consensus 12 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 12 LALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCChHHHHH
Confidence 3455678877 456789999999774
No 237
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=36.58 E-value=15 Score=38.28 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=17.6
Q ss_pred HHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
+++++-.|.- +.-.|+.|||||+.+
T Consensus 15 ~l~~i~~Ge~--~~liG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTI--VFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSE--EEEECCTTSSTTHHH
T ss_pred HHHhccCCCE--EEEECCCCCCHHHHH
Confidence 3444545654 445899999999887
No 238
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=36.40 E-value=3.5e+02 Score=27.23 Aligned_cols=94 Identities=14% Similarity=0.112 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001081 455 YEREKEIQDLKQEILGLRQALKEA-----NDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVA 529 (1162)
Q Consensus 455 ~~l~~eI~eLk~Ei~~Lr~~L~~~-----~eq~~~l~~Elqk~~k~~~elq~~Lk~e~~~L~~k~k~~kEe~~qL~~ql~ 529 (1162)
..+-..+.+|+.-|+.||.....- ..++.....+++...+....++.-+..+.-.|..-.+.+-+..++-+.-+.
T Consensus 24 d~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~VceEQqfl~ 103 (141)
T 3okq_A 24 DTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCEEQQFLT 103 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666553211 122333444555555555666667777777777766666555655554444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001081 530 QLLQLEQEQKMQIQQRDST 548 (1162)
Q Consensus 530 qllq~eeE~k~qiqq~e~e 548 (1162)
....+..+++..+....++
T Consensus 104 ~QedL~~DL~eDL~ka~et 122 (141)
T 3okq_A 104 LQEELILDLKEDLGKALET 122 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4333444444444443333
No 239
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=36.35 E-value=2.7e+02 Score=26.75 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001081 539 KMQIQQRDSTIKTLQAKINSIESQRNEALH 568 (1162)
Q Consensus 539 k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~ 568 (1162)
+.-++++......|+.+|.+|++++.+...
T Consensus 74 K~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 74 KSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888889999999999998876554
No 240
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=36.30 E-value=2.5e+02 Score=25.65 Aligned_cols=24 Identities=13% Similarity=0.378 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 456 EREKEIQDLKQEILGLRQALKEAN 479 (1162)
Q Consensus 456 ~l~~eI~eLk~Ei~~Lr~~L~~~~ 479 (1162)
..+.++..+..++..++..+....
T Consensus 11 ~~eeEm~~~eeel~~lke~l~k~e 34 (89)
T 3bas_A 11 RQEEEMKEQLKQMDKMKEDLAKTE 34 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888887776543
No 241
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=36.29 E-value=2e+02 Score=26.56 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001081 538 QKMQIQQRDSTIKTLQAKINSIE 560 (1162)
Q Consensus 538 ~k~qiqq~e~eIe~L~~eL~eLe 560 (1162)
.+.+|...+..|+.++..|..|+
T Consensus 56 h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 56 HAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555555555555555554
No 242
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=36.22 E-value=2.7e+02 Score=32.44 Aligned_cols=17 Identities=12% Similarity=0.155 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001081 548 TIKTLQAKINSIESQRN 564 (1162)
Q Consensus 548 eIe~L~~eL~eLe~QL~ 564 (1162)
.+.....+|.+|+..+.
T Consensus 113 ~~~~~~~~i~~L~~~v~ 129 (411)
T 3ghg_C 113 IYNSNNQKIVNLKEKVA 129 (411)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 243
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=35.91 E-value=9.7 Score=43.90 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=19.3
Q ss_pred HHHHhcCCceeEeeeccCCCCCcccc
Q 001081 182 VQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 182 V~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
+..+++|.+. ++..|+||||||...
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~~ 36 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKRI 36 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTTH
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhHH
Confidence 4566788764 567799999999874
No 244
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=35.79 E-value=1.6e+02 Score=30.95 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 450 ARKELYEREKEIQDLKQEILGLRQALK 476 (1162)
Q Consensus 450 ~~~el~~l~~eI~eLk~Ei~~Lr~~L~ 476 (1162)
+..+++..+..|..|..|+..|.++++
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~ 37 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLD 37 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666655555554
No 245
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=35.18 E-value=13 Score=37.36 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=19.5
Q ss_pred HHHHHHhc-CC--ceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALD-GY--NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLd-Gy--N~~IFAYGQTGSGKTyTM 207 (1162)
+-++.++. |. ...+.-+|++|||||+.+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 34556664 33 235667899999999886
No 246
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=35.14 E-value=2.6e+02 Score=25.33 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001081 460 EIQDLKQEILGLRQALKEANDQ 481 (1162)
Q Consensus 460 eI~eLk~Ei~~Lr~~L~~~~eq 481 (1162)
+|+.|+.....|+..+...+..
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~ 23 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEEN 23 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666665554443
No 247
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=34.99 E-value=15 Score=36.96 Aligned_cols=28 Identities=36% Similarity=0.458 Sum_probs=21.6
Q ss_pred HHHHHHhc-CC--ceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALD-GY--NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLd-Gy--N~~IFAYGQTGSGKTyTM 207 (1162)
+-++.++. |. ...+.-+|++|||||..+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 45677775 54 357899999999999876
No 248
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=34.93 E-value=18 Score=42.16 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=26.3
Q ss_pred eeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 160 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 160 ~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
.||.|.+ +++.... ++..+-.+....++-||++|+|||+...
T Consensus 178 ~ld~iiG----r~~~i~~---l~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 178 SLDPVIG----RSKEIQR---VIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CSCCCCC----CHHHHHH---HHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCccC----cHHHHHH---HHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 3555554 4443333 3333334555567889999999999873
No 249
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=34.56 E-value=14 Score=39.71 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=18.2
Q ss_pred HHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.+..+++|.+ .++..++||||||.+.
T Consensus 36 ~i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 36 VIPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHHhCCCC-CEEEECCCCChHHHHH
Confidence 3455566632 3567799999999875
No 250
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=34.13 E-value=16 Score=42.23 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=24.6
Q ss_pred CCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 168 HVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 168 ~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
+..|.+++..+.. .+..| +..++..|..|||||+++
T Consensus 27 n~~Q~~av~~~~~---~i~~~-~~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 27 TEGQKNAFNIVMK---AIKEK-KHHVTINGPAGTGATTLT 62 (459)
T ss_dssp CHHHHHHHHHHHH---HHHSS-SCEEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHHHH---HHhcC-CCEEEEEeCCCCCHHHHH
Confidence 4467777665432 22333 348899999999999876
No 251
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=33.71 E-value=9.7 Score=43.35 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=15.9
Q ss_pred ceeEeeeccCCCCCcccc
Q 001081 190 NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 190 N~~IFAYGQTGSGKTyTM 207 (1162)
+.-++.+|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 566889999999999987
No 252
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=33.43 E-value=11 Score=37.48 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=15.1
Q ss_pred eeEeeeccCCCCCccccc
Q 001081 191 VSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 191 ~~IFAYGQTGSGKTyTM~ 208 (1162)
-++.-.|++|||||+.+-
T Consensus 10 ei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 367789999999999873
No 253
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=33.16 E-value=15 Score=41.79 Aligned_cols=25 Identities=28% Similarity=0.081 Sum_probs=18.2
Q ss_pred HHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.+..+++|.+ ++..|+||||||.+.
T Consensus 101 ai~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 101 ALERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHHHhcCC--EEEEeCCCCCHHHHH
Confidence 3445566655 566789999999986
No 254
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=33.11 E-value=2.8e+02 Score=25.26 Aligned_cols=43 Identities=14% Similarity=0.285 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 519 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIES 561 (1162)
Q Consensus 519 Ee~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~ 561 (1162)
|.+.+.+..+..+.+.+++++.--+..+..+..++.+-.+++.
T Consensus 18 E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ 60 (78)
T 3iv1_A 18 EEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333333333444444444333333
No 255
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=33.02 E-value=21 Score=42.06 Aligned_cols=47 Identities=26% Similarity=0.350 Sum_probs=30.0
Q ss_pred ceeeeceeeCCCCChHHHHHhhHHHHHHHh-----c--C--CceeEeeeccCCCCCcccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDVQPFVQSAL-----D--G--YNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V~PLV~svL-----d--G--yN~~IFAYGQTGSGKTyTM 207 (1162)
..++|+.|.+ ++++-+.+..++..+- . | ....|+-||++|+|||+..
T Consensus 11 ~~~~f~di~G----~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGG----AEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCS----CHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCC----cHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 3567787766 4555555555544321 1 1 2245899999999999876
No 256
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=33.01 E-value=5.8e+02 Score=30.87 Aligned_cols=21 Identities=5% Similarity=0.074 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 001081 549 IKTLQAKINSIESQRNEALHS 569 (1162)
Q Consensus 549 Ie~L~~eL~eLe~QL~e~~~s 569 (1162)
.+.++.+.+.|..|+..+...
T Consensus 562 ~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 562 KEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455677778888877776555
No 257
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=32.91 E-value=3.5e+02 Score=26.18 Aligned_cols=23 Identities=22% Similarity=0.409 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001081 460 EIQDLKQEILGLRQALKEANDQC 482 (1162)
Q Consensus 460 eI~eLk~Ei~~Lr~~L~~~~eq~ 482 (1162)
+|..|+..+...++.|.....+|
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~i 47 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELI 47 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433333
No 258
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=32.71 E-value=17 Score=43.65 Aligned_cols=25 Identities=40% Similarity=0.444 Sum_probs=19.5
Q ss_pred HHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
++..+++|.| ++..++||||||.+.
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 4555677877 577799999999875
No 259
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=32.41 E-value=3.1e+02 Score=25.42 Aligned_cols=29 Identities=21% Similarity=0.365 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001081 539 KMQIQQRDSTIKTLQAKINSIESQRNEAL 567 (1162)
Q Consensus 539 k~qiqq~e~eIe~L~~eL~eLe~QL~e~~ 567 (1162)
...+...+..+..++.++.+++.++.+..
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666666666665544
No 260
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=32.32 E-value=24 Score=41.90 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=29.1
Q ss_pred eeeeceeeCCCCChHHHHHhhHHHHHHH-----hcCC----ceeEeeeccCCCCCcccc
Q 001081 158 DFEFDRVYGPHVGQAELFSDVQPFVQSA-----LDGY----NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 158 ~F~FDkVF~~~asQeeVFe~V~PLV~sv-----LdGy----N~~IFAYGQTGSGKTyTM 207 (1162)
.++|+.|.+ ++++-..+..++..+ +... ...|+-||++|+|||+.+
T Consensus 27 ~~~f~dv~G----~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 27 KVTFKDVAG----AEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCTTSSCS----CHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHcCC----cHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 466777765 455555555554432 2221 224899999999999876
No 261
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=32.17 E-value=18 Score=36.59 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=20.9
Q ss_pred HHHHHHhc-CC--ceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALD-GY--NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLd-Gy--N~~IFAYGQTGSGKTyTM 207 (1162)
+-++.++. |. ..++.-+|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 45667774 43 347888999999999876
No 262
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=32.16 E-value=13 Score=35.49 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=13.6
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
.|+-.|.+|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999854
No 263
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=32.01 E-value=17 Score=43.92 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=18.2
Q ss_pred HHHHhcCCceeEeeeccCCCCCcccc
Q 001081 182 VQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 182 V~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
+..++. +..++..|++|||||+|+
T Consensus 158 i~~~l~--~~~~vi~G~pGTGKTt~l 181 (608)
T 1w36_D 158 AAVALT--RRISVISGGPGTGKTTTV 181 (608)
T ss_dssp HHHHHT--BSEEEEECCTTSTHHHHH
T ss_pred HHHHhc--CCCEEEEeCCCCCHHHHH
Confidence 333444 356888999999999998
No 264
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=31.90 E-value=57 Score=25.66 Aligned_cols=27 Identities=37% Similarity=0.655 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 601 SKKLEEELKKRDALIERLHEENEKLFD 627 (1162)
Q Consensus 601 kkKLEEELkkrd~~ieqL~eEneKL~~ 627 (1162)
..||--++.++|++|-+|++||+.|.+
T Consensus 9 NekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 467888899999999999999998754
No 265
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=31.80 E-value=20 Score=42.34 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=20.8
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.++..++.|.+.-++..++||||||.+.
T Consensus 50 ~~i~~il~~~~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 50 KTIKPILSSEDHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp HHHHHHHCSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHHHccCCCeEEEEcCCCcHHHHHH
Confidence 4566677555556788899999999864
No 266
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=31.73 E-value=4.5e+02 Score=27.13 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 520 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 564 (1162)
Q Consensus 520 e~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~ 564 (1162)
.+..+...-.++.+..........+.+.++..++-++-.|.+...
T Consensus 104 RL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD 148 (170)
T 3l4q_C 104 RIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRD 148 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 333333333333333333444445566666666666666665443
No 267
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=31.26 E-value=2.7e+02 Score=25.78 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001081 539 KMQIQQRDSTIKTLQAKINSIESQRNEALH 568 (1162)
Q Consensus 539 k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~ 568 (1162)
..+|..-..+|+.++..|+.....+.++..
T Consensus 50 ~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445666677777777777777776666543
No 268
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.15 E-value=3.2e+02 Score=25.28 Aligned_cols=23 Identities=9% Similarity=0.160 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001081 542 IQQRDSTIKTLQAKINSIESQRN 564 (1162)
Q Consensus 542 iqq~e~eIe~L~~eL~eLe~QL~ 564 (1162)
+.....++..++.++..|+.++.
T Consensus 80 i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 80 LAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555544443
No 269
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=31.04 E-value=14 Score=37.73 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=14.7
Q ss_pred ceeEeeeccCCCCCcccc
Q 001081 190 NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 190 N~~IFAYGQTGSGKTyTM 207 (1162)
...|.-.|++|||||.++
T Consensus 8 g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CcEEEEECcCCCCHHHHH
Confidence 345777899999999876
No 270
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=30.94 E-value=5e+02 Score=27.45 Aligned_cols=15 Identities=13% Similarity=0.133 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 001081 460 EIQDLKQEILGLRQA 474 (1162)
Q Consensus 460 eI~eLk~Ei~~Lr~~ 474 (1162)
.+..|+.++..|..+
T Consensus 133 ~~~~~~~~~~~L~~e 147 (213)
T 1ik9_A 133 TIAENQAKNEHLQKE 147 (213)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555443
No 271
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=30.93 E-value=12 Score=42.11 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=14.7
Q ss_pred ceeEeeeccCCCCCcccc
Q 001081 190 NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 190 N~~IFAYGQTGSGKTyTM 207 (1162)
|..++..|+||||||+++
T Consensus 35 ~~~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTA 52 (392)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred cCceEEEcCCCCCHHHHH
Confidence 444677899999999987
No 272
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=30.78 E-value=29 Score=39.38 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=15.2
Q ss_pred eeEeeeccCCCCCcccc
Q 001081 191 VSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 191 ~~IFAYGQTGSGKTyTM 207 (1162)
.+|.-.|++|||||.|+
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 46888999999999998
No 273
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=30.38 E-value=3.3e+02 Score=25.20 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 519 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIES 561 (1162)
Q Consensus 519 Ee~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~ 561 (1162)
..+..++.++..+..... ....++..+...+.+++.
T Consensus 56 ~~i~~Lr~~i~~~~~ek~-------~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKA-------RVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 344555555544443332 233444455555555544
No 274
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=30.35 E-value=1.7e+02 Score=29.26 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 459 KEIQDLKQEILGLRQALKEANDQCVLLYNEVQ 490 (1162)
Q Consensus 459 ~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elq 490 (1162)
.++..|..++..-+.....++.....+..|++
T Consensus 46 ~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE 77 (135)
T 2e7s_A 46 DEVKRLREDIAKENELRTKAEEEADKLNKEVE 77 (135)
T ss_dssp HHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333434434444443
No 275
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=30.21 E-value=3.2e+02 Score=24.93 Aligned_cols=24 Identities=4% Similarity=0.116 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 541 QIQQRDSTIKTLQAKINSIESQRN 564 (1162)
Q Consensus 541 qiqq~e~eIe~L~~eL~eLe~QL~ 564 (1162)
.+...+..+..++.++.+++.++.
T Consensus 80 ~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 80 REKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555443
No 276
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=30.10 E-value=13 Score=37.03 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=13.5
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
.|.-.|++|||||..+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4666799999999876
No 277
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=30.07 E-value=3e+02 Score=24.57 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 509 MLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 563 (1162)
Q Consensus 509 ~L~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL 563 (1162)
.|..++...++++..|.-.+..+..+...+-+--..++.+....+..+..|+..+
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~ 61 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKL 61 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhc
Confidence 3344444445555555555554444333333333344445555666666666443
No 278
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=30.03 E-value=17 Score=43.28 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=17.6
Q ss_pred hcCCceeEeeeccCCCCCcccc
Q 001081 186 LDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 186 LdGyN~~IFAYGQTGSGKTyTM 207 (1162)
+.-.++.++..|..|||||+|+
T Consensus 18 v~~~~~~~lV~a~aGsGKT~~l 39 (647)
T 3lfu_A 18 VAAPRSNLLVLAGAGSGKTRVL 39 (647)
T ss_dssp HTCCSSCEEEEECTTSCHHHHH
T ss_pred HhCCCCCEEEEECCCCCHHHHH
Confidence 3334667888999999999998
No 279
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=30.01 E-value=28 Score=40.80 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=16.5
Q ss_pred ceeEeeeccCCCCCccccc
Q 001081 190 NVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 190 N~~IFAYGQTGSGKTyTM~ 208 (1162)
...|+..|.+|+|||+|..
T Consensus 100 p~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHH
Confidence 4678889999999999983
No 280
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=29.74 E-value=20 Score=42.92 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=18.7
Q ss_pred HHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
++..++.|.| ++..++||||||...
T Consensus 21 ~i~~~l~g~~--~iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 21 LALPAMKGKN--TIICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCchHHHHH
Confidence 3455677887 467789999999854
No 281
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=29.70 E-value=15 Score=41.23 Aligned_cols=19 Identities=37% Similarity=0.333 Sum_probs=14.6
Q ss_pred cCCceeEeeeccCCCCCcccc
Q 001081 187 DGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 187 dGyN~~IFAYGQTGSGKTyTM 207 (1162)
.|.+. .-.|+||||||.++
T Consensus 174 ~G~~i--~ivG~sGsGKSTll 192 (361)
T 2gza_A 174 LERVI--VVAGETGSGKTTLM 192 (361)
T ss_dssp TTCCE--EEEESSSSCHHHHH
T ss_pred cCCEE--EEECCCCCCHHHHH
Confidence 56654 44599999999987
No 282
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=29.63 E-value=3.3e+02 Score=24.90 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 452 KELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNE 488 (1162)
Q Consensus 452 ~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~E 488 (1162)
.++..++.++..|+..+..........+.++..+.++
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~e 50 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQ 50 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777776666666665544443
No 283
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=29.34 E-value=30 Score=40.33 Aligned_cols=18 Identities=39% Similarity=0.379 Sum_probs=15.1
Q ss_pred ceeEeeeccCCCCCcccc
Q 001081 190 NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 190 N~~IFAYGQTGSGKTyTM 207 (1162)
...|+..|.+|||||+|+
T Consensus 97 ~~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp SEEEEECCCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356777799999999998
No 284
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=29.32 E-value=21 Score=42.47 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=14.9
Q ss_pred eeEeeeccCCCCCcccc
Q 001081 191 VSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 191 ~~IFAYGQTGSGKTyTM 207 (1162)
.+|.-.|++|||||.++
T Consensus 294 eVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCcccHHHHH
Confidence 36778899999999998
No 285
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=29.11 E-value=3e+02 Score=25.17 Aligned_cols=30 Identities=17% Similarity=0.410 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001081 539 KMQIQQRDSTIKTLQAKINSIESQRNEALH 568 (1162)
Q Consensus 539 k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~ 568 (1162)
+.-++++......|+.+|.+|+.++.....
T Consensus 44 K~~~~~R~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 44 KSTLQSRRAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778888999999999999999977654
No 286
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=29.10 E-value=24 Score=35.90 Aligned_cols=20 Identities=20% Similarity=0.076 Sum_probs=15.9
Q ss_pred CCceeEeeeccCCCCCcccc
Q 001081 188 GYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 188 GyN~~IFAYGQTGSGKTyTM 207 (1162)
+..-.|.-.|++|||||+.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34456778899999999876
No 287
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=28.95 E-value=3.1e+02 Score=24.47 Aligned_cols=25 Identities=0% Similarity=0.189 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 541 QIQQRDSTIKTLQAKINSIESQRNE 565 (1162)
Q Consensus 541 qiqq~e~eIe~L~~eL~eLe~QL~e 565 (1162)
.++..+.+++.++.++.....+|.+
T Consensus 49 Kiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 49 KLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443
No 288
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=28.67 E-value=2.7e+02 Score=27.00 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001081 539 KMQIQQRDSTIKTLQAKINSIESQRNEALHSS 570 (1162)
Q Consensus 539 k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s~ 570 (1162)
+.-++++...+..|+.+|.+|+.++.......
T Consensus 61 K~tl~~R~~~Vs~lq~KiaeLKrqLAd~va~~ 92 (113)
T 4fi5_A 61 KRTLTDREGVAVSIQAKIDELKRQLADRIATG 92 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677888999999999999999998876643
No 289
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=28.65 E-value=2.6e+02 Score=23.64 Aligned_cols=33 Identities=30% Similarity=0.370 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 456 EREKEIQDLKQEILGLRQALKEANDQCVLLYNE 488 (1162)
Q Consensus 456 ~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~E 488 (1162)
.+-.++..|+.|+.-||.+|+.--.+...++.|
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~e 39 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLETE 39 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhh
Confidence 345566777777777777776544444444444
No 290
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=28.55 E-value=67 Score=25.27 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 447 ANDARKELYEREKEIQDLKQEILGLR 472 (1162)
Q Consensus 447 ~~~~~~el~~l~~eI~eLk~Ei~~Lr 472 (1162)
.+.+.+++...+.+|..|+.|+.+|.
T Consensus 9 NekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34566777778888888888877765
No 291
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=27.97 E-value=1.5e+02 Score=34.19 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 516 IEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 560 (1162)
Q Consensus 516 ~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe 560 (1162)
.++++..++...+.++....+++++++.+.+.....|.+++.+|+
T Consensus 14 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 14 ALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333334444444444444444444444444444444555554444
No 292
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=27.91 E-value=23 Score=35.83 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=20.4
Q ss_pred HHHHHHHhc---CCceeEeeeccCCCCCcccc
Q 001081 179 QPFVQSALD---GYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 179 ~PLV~svLd---GyN~~IFAYGQTGSGKTyTM 207 (1162)
..+++.+.. .....|.-.|.+|||||+.+
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 344555443 33467888999999999876
No 293
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=27.87 E-value=21 Score=39.42 Aligned_cols=24 Identities=17% Similarity=0.047 Sum_probs=17.9
Q ss_pred HHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.+..+++| .++..++||+|||.+.
T Consensus 17 ~i~~~~~~---~~ll~~~tG~GKT~~~ 40 (494)
T 1wp9_A 17 IYAKCKET---NCLIVLPTGLGKTLIA 40 (494)
T ss_dssp HHHHGGGS---CEEEECCTTSCHHHHH
T ss_pred HHHHHhhC---CEEEEcCCCCCHHHHH
Confidence 44556777 4456789999999887
No 294
>4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A
Probab=27.74 E-value=2.2e+02 Score=31.53 Aligned_cols=252 Identities=14% Similarity=0.172 Sum_probs=124.6
Q ss_pred CCCEEEEEeeCCCCCCCCCceEEeCCCcEEEEecCCCccCCCCceeeeceeeCCC--CChHHHHHhhHHHHHHHh-cCCc
Q 001081 114 LGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPH--VGQAELFSDVQPFVQSAL-DGYN 190 (1162)
Q Consensus 114 lGnIrV~~RVRPl~~~E~~s~V~~~d~~tI~v~~~~~~~~~~~k~F~FDkVF~~~--asQeeVFe~V~PLV~svL-dGyN 190 (1162)
.|.||.|.=+-+-.-++ ...|.+.+.+ |. +. ...+.|.|++|.+.. ..++-+|++.++..+-|+ .+.|
T Consensus 12 kG~iRcFAYi~e~~l~~-~~~IdY~~~t-I~--~~-----~~~~~y~F~RiIp~~~~~e~~ll~qE~~~Y~DmCL~k~~N 82 (275)
T 4gkp_A 12 KGCARLFANIIEDEISE-KLIVNYSDES-IE--DM-----KNHKTYKFTKLIQNFSHQNKDLFKEDLHVYIDFCLKRREN 82 (275)
T ss_dssp ----CEEEEEETTTSCT-TEEEETTTTE-EE--ET-----TTTEEEECSEEEEECSSSCCCGGGTHHHHHHHHHHHTTCC
T ss_pred cCcEEEEEEEccccCCc-cEEEecccce-ec--cC-----CCccEEEEEeeeccccCCHHHHHHHHHHHHHHHHhccCCC
Confidence 39999999885422122 2445555443 43 11 223789999998654 345667778999999998 6899
Q ss_pred eeEeeeccCCCCCccccccCCCCCChHHHHHHHHHHhhccccccccccceeEEEEEEecch-hccccCCCCCCc----eE
Q 001081 191 VSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQ-LRELLPQTGNGL----AK 265 (1162)
Q Consensus 191 ~~IFAYGQTGSGKTyTM~Gs~~d~GIIPRaledLF~~i~~~~~~~~~f~V~VS~lEIYNE~-V~DLL~~~~~~~----~~ 265 (1162)
+.+|+.++.- -+-+--..+..+... -...|.+.+.|+=+-.+. --|||....... .+
T Consensus 83 fnlISiS~~~------------~~~lr~~ll~f~~~~------y~~~y~itlQ~V~Ls~~~~S~Dll~~~~~~~~d~eI~ 144 (275)
T 4gkp_A 83 FNLFSVGSSN------------IPNTFEKLLAFFKNN------YFDKFVITLQYVMLSDNADSQDLLSNNKDGGKDVEIK 144 (275)
T ss_dssp EEEEEECCSS------------CCSHHHHHHHHHHHH------TTTTEEEEEEEEEEC----CEETTCC----------C
T ss_pred ceEEEecCCC------------cHHHHHHHHHHHHHh------ccccceEEEEEEEecCCCcccccccCCccccCCccee
Confidence 9999988643 223445555555543 234678888888776554 448885543221 11
Q ss_pred EeecccccceeeeeeecCCHHHHHHHHHHHHhhcCCCCcCCceeEEEEEEEEEEeeccCCceeeeeeeEEecCCCccccc
Q 001081 266 IRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIA 345 (1162)
Q Consensus 266 i~~~~~~~v~~Lt~~~V~S~~e~~~lL~~g~~nR~~~~t~SSRSH~IftI~V~~~n~~tg~~~~SKL~LVDLAGSER~~k 345 (1162)
+..+...-..+-..+.+.+..+...+. -..........-.|+.+.+...+. .+..--.++||-+-+..-
T Consensus 145 Lk~e~~sI~ldS~~i~i~~~~~~~~~~------~~~~~~~~~~Gi~IlKfq~~~~~~--~e~~pidfYFiei~~~~t--- 213 (275)
T 4gkp_A 145 LKIEESTISLGSTLITLDEITDKLQIK------KKYSQLNHQNGIGLSKFQFFCLQD--IEPIPIDFYFIEIYQPSI--- 213 (275)
T ss_dssp EEECSSCEEECSCCEEGGGCCSCC--C------CSCC-----CCEEEEEEEEEETTC--SSCCCEEEEEEEECCGGG---
T ss_pred EEeecceeeecceEEEeccCccccchh------hhccCCCCCCCceEEEEEEEeccC--CCCCceeEEEEEecCHHH---
Confidence 222211111111112221111100000 000000001122365566654432 122222678887766542
Q ss_pred CCCcchhHHHHHHHhHhhHHHHHHHHhhcCCCCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHHhHHHH
Q 001081 346 EDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSS 425 (1162)
Q Consensus 346 s~a~G~RlkEa~~INkSLsaLg~VIsALs~k~~hVPYRdSKLTrLLqDSLGGNSkTvMIa~ISPs~~n~eETLsTLrFAs 425 (1162)
...|.++ ..+.. +-.|+++-+|+-.| ..+|-+++.++.-. ++.-..|..+.
T Consensus 214 -----------------~~~L~~~----~s~~~---~~~spi~~iLk~LL-~~TKS~flfni~~~----~n~~~lL~ls~ 264 (275)
T 4gkp_A 214 -----------------YPILKRS----TGTES---NLNSPLEIVLKKIF-HDTKSAFVFQIDHS----AEVYDILKLSS 264 (275)
T ss_dssp -----------------HHHHHHC---------------CHHHHHHHHHH-HHSBCCEEEEESSC----TTHHHHHHHHH
T ss_pred -----------------HHHHHhc----cCCCC---CCCCcHHHHHHHHH-hcCcceEEEEccCc----chHHHHHHHHH
Confidence 1122222 22111 11278887777666 45888999998753 23335777888
Q ss_pred Hhhhccc
Q 001081 426 RARSTVL 432 (1162)
Q Consensus 426 RAr~I~~ 432 (1162)
++.++.+
T Consensus 265 ~l~~~~~ 271 (275)
T 4gkp_A 265 HLSFIRN 271 (275)
T ss_dssp HHTTCCC
T ss_pred HhccccC
Confidence 8877654
No 295
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=27.69 E-value=23 Score=44.22 Aligned_cols=51 Identities=24% Similarity=0.308 Sum_probs=33.4
Q ss_pred ceeeeceeeCCCCChHHHHHhh-HHHHH-HHhc----CCceeEeeeccCCCCCcccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDV-QPFVQ-SALD----GYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V-~PLV~-svLd----GyN~~IFAYGQTGSGKTyTM 207 (1162)
..++||.|.+.+..-+.+.+.+ .|+.. .++. ....+|+-||++|||||+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 4578888888776666666554 23322 1222 22346889999999999766
No 296
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=27.28 E-value=18 Score=39.67 Aligned_cols=17 Identities=41% Similarity=0.602 Sum_probs=14.4
Q ss_pred eeEeeeccCCCCCcccc
Q 001081 191 VSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 191 ~~IFAYGQTGSGKTyTM 207 (1162)
..|.-.|++|+|||+|+
T Consensus 106 ~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35666799999999998
No 297
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=27.25 E-value=16 Score=36.47 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=13.6
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
.|.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677799999999876
No 298
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=27.18 E-value=20 Score=36.51 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=19.0
Q ss_pred HHHHhcC-C--ceeEeeeccCCCCCcccc
Q 001081 182 VQSALDG-Y--NVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 182 V~svLdG-y--N~~IFAYGQTGSGKTyTM 207 (1162)
++.++.| . ...+.-+|++|||||..+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 4566543 2 346788999999999885
No 299
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=26.94 E-value=15 Score=36.62 Aligned_cols=16 Identities=25% Similarity=0.466 Sum_probs=13.3
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
.|.-.|++|||||+++
T Consensus 3 ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 3 PIVISGPSGTGKSTLL 18 (186)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556899999999887
No 300
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=26.77 E-value=23 Score=42.68 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=18.6
Q ss_pred HHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
.|..++. +..++..|+.|||||+|+.
T Consensus 188 av~~~l~--~~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 188 AVKTVLQ--RPLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp HHHHHHT--CSEEEEECCTTSCHHHHHH
T ss_pred HHHHHhc--CCCeEEECCCCCCHHHHHH
Confidence 3445553 3356779999999999983
No 301
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=26.76 E-value=1.7e+02 Score=26.42 Aligned_cols=47 Identities=11% Similarity=-0.009 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 519 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 565 (1162)
Q Consensus 519 Ee~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL~e 565 (1162)
+.+.+|..+++-.....+++...+.+...+|..|+.++..|..++.+
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555556666666666666666655543
No 302
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=26.60 E-value=3.8e+02 Score=24.64 Aligned_cols=25 Identities=12% Similarity=0.355 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 541 QIQQRDSTIKTLQAKINSIESQRNE 565 (1162)
Q Consensus 541 qiqq~e~eIe~L~~eL~eLe~QL~e 565 (1162)
++++.+..++.|..+++.++.++.+
T Consensus 46 kL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 46 QLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666666666655
No 303
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=26.40 E-value=18 Score=35.03 Aligned_cols=17 Identities=29% Similarity=0.282 Sum_probs=14.2
Q ss_pred eeEeeeccCCCCCcccc
Q 001081 191 VSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 191 ~~IFAYGQTGSGKTyTM 207 (1162)
..|+-.|..|||||+..
T Consensus 3 ~~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEecCCCCCHHHHH
Confidence 36889999999999853
No 304
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=26.31 E-value=16 Score=36.06 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=14.5
Q ss_pred eeEeeeccCCCCCcccc
Q 001081 191 VSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 191 ~~IFAYGQTGSGKTyTM 207 (1162)
.+|.-.|+.|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46788999999999876
No 305
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=26.19 E-value=61 Score=39.12 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=19.6
Q ss_pred ceeeeceeeCCCCC----hHHHHHh--hHHHHHHHhcCCce
Q 001081 157 KDFEFDRVYGPHVG----QAELFSD--VQPFVQSALDGYNV 191 (1162)
Q Consensus 157 k~F~FDkVF~~~as----QeeVFe~--V~PLV~svLdGyN~ 191 (1162)
-.|.|-.-|.+... .+++... ...+..+++.|.-.
T Consensus 76 ~~L~FRvkfy~~~~~~~l~d~~t~~LlYlQvk~dIl~G~l~ 116 (575)
T 2i1j_A 76 LQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIY 116 (575)
T ss_dssp EEEEEEESSCCSSHHHHCCSHHHHHHHHHHHHHHHHTTSSC
T ss_pred eEEEEEEEEcCCChhhhcCCHHHHHHHHHHHHHHHhCCCCC
Confidence 45677776666532 2233322 24667777887643
No 306
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=26.02 E-value=5.3e+02 Score=26.15 Aligned_cols=9 Identities=33% Similarity=0.353 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 001081 468 ILGLRQALK 476 (1162)
Q Consensus 468 i~~Lr~~L~ 476 (1162)
+..|...+.
T Consensus 44 ~~eLEeeL~ 52 (155)
T 2efr_A 44 SAELEEELK 52 (155)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 307
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=25.94 E-value=19 Score=39.75 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=14.4
Q ss_pred eeEeeeccCCCCCcccc
Q 001081 191 VSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 191 ~~IFAYGQTGSGKTyTM 207 (1162)
.+|.-.|++|||||.++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 45666799999999998
No 308
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=25.82 E-value=24 Score=43.20 Aligned_cols=29 Identities=21% Similarity=0.158 Sum_probs=20.9
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
.+++.+.......++-||++|+|||+.+.
T Consensus 197 ~l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 197 RAIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred HHHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 34444444555667889999999999884
No 309
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=25.63 E-value=1.5e+02 Score=34.38 Aligned_cols=11 Identities=36% Similarity=0.516 Sum_probs=6.1
Q ss_pred hhHHHHhHhcC
Q 001081 754 DAVFAFIRKME 764 (1162)
Q Consensus 754 ~~~~~~~~~~~ 764 (1162)
+.+|..|..+.
T Consensus 171 ~~lF~~i~~~~ 181 (412)
T 3u06_A 171 DLLFDSIRGYR 181 (412)
T ss_dssp HHHHHHHHHHG
T ss_pred HHHHHhhhhhc
Confidence 44566665543
No 310
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=25.63 E-value=17 Score=42.09 Aligned_cols=23 Identities=17% Similarity=0.491 Sum_probs=19.8
Q ss_pred HhcCCceeEeeeccCCCCCcccc
Q 001081 185 ALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 185 vLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
+++|++..|.-.|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 57899999999999999999865
No 311
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=25.54 E-value=3.5e+02 Score=25.60 Aligned_cols=31 Identities=16% Similarity=0.409 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001081 539 KMQIQQRDSTIKTLQAKINSIESQRNEALHS 569 (1162)
Q Consensus 539 k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s 569 (1162)
+.-++++...+..|+.+|.+|+.++......
T Consensus 44 k~~~~~R~~~V~~lq~Ki~elkr~lAd~v~~ 74 (96)
T 2ic9_A 44 KSTLQSRRAAVSALETKLGELKRELADLIAA 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567788889999999999999999876663
No 312
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=25.45 E-value=19 Score=35.39 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=13.5
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
.|+-.|.+|||||+.-
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999743
No 313
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=25.42 E-value=28 Score=44.56 Aligned_cols=73 Identities=15% Similarity=0.171 Sum_probs=41.6
Q ss_pred CCCchhhhhhhhhhhcHHHHHHHHHHHHhhccccchhhhhHhHHHhhHHHHHhhCccccc-cCchhHHHHHHHHHHHHHH
Q 001081 1033 NPSTAAEDARLASLISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLD-IDHPCAQRQIADARRMVEV 1111 (1162)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 1111 (1162)
+|....-=-+.|.=.|+.+|++. -+...+.+- ....+||||..||..--. |-+| .-..+|-+.
T Consensus 918 ~~~l~~~v~~Wa~g~~f~~i~~~-----t~~~eG~~v-----R~~~rl~e~~~q~~~aa~~~g~~------~l~~k~~~a 981 (997)
T 4a4z_A 918 RFAMMNVVYEWARGLSFKEIMEM-----SPEAEGTVV-----RVITWLDEICREVKTASIIIGNS------TLHMKMSRA 981 (997)
T ss_dssp TTTTHHHHHHHHHTCCHHHHHHT-----CSSCHHHHH-----HHHHHHHHHHHHHHHHHHHHTCH------HHHHHHHHH
T ss_pred ChHHHHHHHHHhCCCCHHHHHhc-----CCCCchHHH-----HHHHHHHHHHHHHHHHHHhcCCH------HHHHHHHHH
Confidence 44444444467778888888854 223333332 246788888888754211 1111 224566666
Q ss_pred HHhhccccee
Q 001081 1112 LQQMRSDVAL 1121 (1162)
Q Consensus 1112 ~~~~~~~~~~ 1121 (1162)
+.-+|+||..
T Consensus 982 ~~~i~R~iv~ 991 (997)
T 4a4z_A 982 QELIKRDIVF 991 (997)
T ss_dssp HHHHSCGGGG
T ss_pred HHHhcCCeee
Confidence 7778888763
No 314
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.36 E-value=97 Score=25.22 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 57 SKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQEYS 93 (1162)
Q Consensus 57 ~~~~~~~~l~~l~~~l~~~k~~~~~lrqe~~el~e~~ 93 (1162)
+|.++..+++++..+++..++.+.+++....+|++..
T Consensus 3 tk~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 3 SKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567889999999999999999999998888887653
No 315
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=25.30 E-value=8.4e+02 Score=28.82 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 541 QIQQRDSTIKTLQAKINSIESQRN 564 (1162)
Q Consensus 541 qiqq~e~eIe~L~~eL~eLe~QL~ 564 (1162)
.|+.+...++.+..+|+.|+..+.
T Consensus 164 ~i~~l~~~~~~~~~~i~~l~~~~~ 187 (461)
T 3ghg_B 164 NLRVLRSILENLRSKIQKLESDVS 187 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555554444
No 316
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=25.15 E-value=2.4e+02 Score=24.30 Aligned_cols=9 Identities=22% Similarity=0.409 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 001081 523 QLRNQVAQL 531 (1162)
Q Consensus 523 qL~~ql~ql 531 (1162)
.+..++..+
T Consensus 27 ~le~~~~~L 35 (63)
T 1ci6_A 27 ALTGECKEL 35 (63)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 317
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=25.06 E-value=5.2e+02 Score=25.70 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001081 459 KEIQDLKQEILGLRQAL 475 (1162)
Q Consensus 459 ~eI~eLk~Ei~~Lr~~L 475 (1162)
++|..|+.|+..++..+
T Consensus 60 KEi~~Lrae~~~~QRn~ 76 (167)
T 4gkw_A 60 KEIGKLRAELGTAQRNL 76 (167)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 34444444444443333
No 318
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=25.04 E-value=17 Score=36.99 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=14.0
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
.+.-.|++|||||.++
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677899999999987
No 319
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=24.76 E-value=33 Score=42.40 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=19.9
Q ss_pred cCCceeEeeeccCCCCCcccc
Q 001081 187 DGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 187 dGyN~~IFAYGQTGSGKTyTM 207 (1162)
++.|-||+..|.+|||||.+.
T Consensus 91 ~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 91 SQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 699999999999999999986
No 320
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=24.63 E-value=19 Score=35.83 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=13.8
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5777899999999876
No 321
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=24.49 E-value=16 Score=42.97 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=19.1
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.+|..+++|.++ +..++||||||.+.
T Consensus 32 ~~i~~il~g~d~--lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 32 EIIDTVLSGRDC--LVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHHTTCCE--EEECSCHHHHHHHH
T ss_pred HHHHHHHcCCCE--EEECCCCcHHHHHH
Confidence 345566788875 44679999999765
No 322
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=24.33 E-value=40 Score=41.10 Aligned_cols=48 Identities=27% Similarity=0.391 Sum_probs=35.5
Q ss_pred eeeeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccccc
Q 001081 158 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG 209 (1162)
Q Consensus 158 ~F~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~G 209 (1162)
.|....=|.|...|..-++. +++.+-.|... ....|.|||||||||..
T Consensus 4 ~~~~~~~~~p~~~Q~~~i~~---l~~~~~~~~~~-~~l~g~~gs~k~~~~a~ 51 (661)
T 2d7d_A 4 RFELVSKYQPQGDQPKAIEK---LVKGIQEGKKH-QTLLGATGTGKTFTVSN 51 (661)
T ss_dssp CCCCCCSCCCCTTHHHHHHH---HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred cceeecCCCCCCCCHHHHHH---HHHHHhcCCCc-EEEECcCCcHHHHHHHH
Confidence 47777778999999887665 45666666532 34569999999999963
No 323
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=24.27 E-value=21 Score=34.82 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=14.6
Q ss_pred eeEeeeccCCCCCcccc
Q 001081 191 VSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 191 ~~IFAYGQTGSGKTyTM 207 (1162)
..|+-.|.+|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999765
No 324
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=24.26 E-value=29 Score=42.85 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=19.7
Q ss_pred HHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 180 PFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 180 PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
..+..++.|.| ++..++||||||.+.
T Consensus 255 ~~i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 255 ELAQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHHhCCC--EEEEeCCCChHHHHH
Confidence 34556678877 466789999999875
No 325
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=24.21 E-value=1.7e+02 Score=26.67 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 449 DARKELYEREKEIQDLKQEILGLRQA 474 (1162)
Q Consensus 449 ~~~~el~~l~~eI~eLk~Ei~~Lr~~ 474 (1162)
++-..++++..+..-|+.|+..++..
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~ 59 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQA 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333444444444444444444333
No 326
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=24.11 E-value=18 Score=39.56 Aligned_cols=23 Identities=17% Similarity=0.502 Sum_probs=16.7
Q ss_pred HhcCCceeEeeeccCCCCCcccc
Q 001081 185 ALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 185 vLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
+++|++..|...|++|+|||..|
T Consensus 13 ~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 13 VKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp -----CEEEEEEEETTSSHHHHH
T ss_pred EEcCCCEEEEEECCCCCCHHHHH
Confidence 57899999999999999999776
No 327
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=24.02 E-value=5e+02 Score=25.13 Aligned_cols=15 Identities=0% Similarity=0.018 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 001081 459 KEIQDLKQEILGLRQ 473 (1162)
Q Consensus 459 ~eI~eLk~Ei~~Lr~ 473 (1162)
.+..+|++++.++..
T Consensus 13 ~~~~ql~~qL~k~~~ 27 (112)
T 1x79_B 13 LMLRQANDQLEKTMK 27 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 328
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=23.98 E-value=23 Score=36.42 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=9.6
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
.|.-.|++|||||.++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566899999999887
No 329
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=23.73 E-value=35 Score=41.97 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=26.0
Q ss_pred eeceeeCCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 160 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 160 ~FDkVF~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.||.|.+ +++..+. ++..+..+....++-||++|+|||...
T Consensus 178 ~ld~iiG----~~~~i~~---l~~~l~~~~~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 178 SLDPVIG----RSKEIQR---VIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp CSCCCCC----CHHHHHH---HHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred CCCCccC----chHHHHH---HHHHHhCCCCCCeEEECCCCCCHHHHH
Confidence 3555554 4444443 333334455556888999999999876
No 330
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.61 E-value=1.6e+02 Score=24.02 Aligned_cols=28 Identities=21% Similarity=0.238 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 533 QLEQEQKMQIQQRDSTIKTLQAKINSIE 560 (1162)
Q Consensus 533 q~eeE~k~qiqq~e~eIe~L~~eL~eLe 560 (1162)
+.++....+|...+++|..|+.++.+|+
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555666666666666665
No 331
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=23.58 E-value=20 Score=36.65 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=14.6
Q ss_pred eeEeeeccCCCCCccccc
Q 001081 191 VSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 191 ~~IFAYGQTGSGKTyTM~ 208 (1162)
.++.-+|++|||||..+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHH
Confidence 356669999999999873
No 332
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=23.56 E-value=20 Score=38.83 Aligned_cols=19 Identities=26% Similarity=0.553 Sum_probs=15.9
Q ss_pred CceeEeeeccCCCCCcccc
Q 001081 189 YNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 189 yN~~IFAYGQTGSGKTyTM 207 (1162)
|+-+|...|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 3567888999999999876
No 333
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=23.50 E-value=27 Score=43.60 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=27.6
Q ss_pred CCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 166 GPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 166 ~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.+..-|.+++..+ ..+.-.|....++..|+||||||...
T Consensus 368 ~lt~~Q~~ai~~I---~~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 368 KLTNAQKRAHQEI---RNDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp CCCHHHHHHHHHH---HHHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred CCCHHHHHHHHHH---HhhccccCCCcEEEEcCCCCCHHHHH
Confidence 4556677776654 33444566567888999999999875
No 334
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=23.38 E-value=37 Score=42.54 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=19.9
Q ss_pred cCCceeEeeeccCCCCCcccc
Q 001081 187 DGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 187 dGyN~~IFAYGQTGSGKTyTM 207 (1162)
++.|-||+..|.+|||||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 699999999999999999986
No 335
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=23.38 E-value=2.6e+02 Score=22.76 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 507 NYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 563 (1162)
Q Consensus 507 ~~~L~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL 563 (1162)
+..+..++..++..+-++...-. .++.-|.+|+.+|..|+.+.
T Consensus 5 naylrkkiarlkkdnlqlerdeq--------------nlekiianlrdeiarlenev 47 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLERDEQ--------------NLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhhhhHh--------------hHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555432221 23444666667776666543
No 336
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=23.37 E-value=4e+02 Score=23.78 Aligned_cols=31 Identities=29% Similarity=0.326 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 449 DARKELYEREKEIQDLKQEILGLRQALKEAN 479 (1162)
Q Consensus 449 ~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~ 479 (1162)
++...+.+.+.||.+|..-+..||.+|....
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiKYt 37 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEKYV 37 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667778888888888888888876543
No 337
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=23.36 E-value=21 Score=35.12 Aligned_cols=17 Identities=29% Similarity=0.266 Sum_probs=14.3
Q ss_pred eeEeeeccCCCCCcccc
Q 001081 191 VSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 191 ~~IFAYGQTGSGKTyTM 207 (1162)
..|+..|.+|||||+..
T Consensus 12 ~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEEeCCCCCHHHHH
Confidence 35788999999999865
No 338
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=23.31 E-value=37 Score=42.60 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=19.8
Q ss_pred cCCceeEeeeccCCCCCcccc
Q 001081 187 DGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 187 dGyN~~IFAYGQTGSGKTyTM 207 (1162)
++.|-||+..|.+|||||.+.
T Consensus 137 ~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 137 LKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCceehH
Confidence 699999999999999999886
No 339
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=23.28 E-value=1e+03 Score=28.95 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 001081 601 SKKLEEELKKRDALIE 616 (1162)
Q Consensus 601 kkKLEEELkkrd~~ie 616 (1162)
=+.+.|-+.+..++++
T Consensus 152 ~e~lae~l~q~rqql~ 167 (585)
T 1y1u_A 152 CEKLAEIIWQNRQQIR 167 (585)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555554
No 340
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=23.12 E-value=21 Score=36.13 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=12.9
Q ss_pred EeeeccCCCCCcccc
Q 001081 193 IFAYGQTHSGKTHTM 207 (1162)
Q Consensus 193 IFAYGQTGSGKTyTM 207 (1162)
+.-.|+.|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556899999999976
No 341
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=22.99 E-value=21 Score=35.36 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=13.7
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
.|.-.|+.|||||+++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 5667899999999886
No 342
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=22.97 E-value=29 Score=34.98 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=15.9
Q ss_pred CCceeEeeeccCCCCCcccc
Q 001081 188 GYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 188 GyN~~IFAYGQTGSGKTyTM 207 (1162)
....+|+-.|.+|||||+.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34457888899999999765
No 343
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=22.96 E-value=8.8e+02 Score=27.62 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001081 454 LYEREKEIQDLKQEILGLRQALK 476 (1162)
Q Consensus 454 l~~l~~eI~eLk~Ei~~Lr~~L~ 476 (1162)
......+...|-++.....++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~e~~ 157 (373)
T 3hhm_B 135 FQEKSREYDRLYEEYTRTSQEIQ 157 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHhccchHHHH
Confidence 33445555666666665555554
No 344
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=22.76 E-value=5.5e+02 Score=30.50 Aligned_cols=32 Identities=13% Similarity=0.009 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001081 538 QKMQIQQRDSTIKTLQAKINSIESQRNEALHS 569 (1162)
Q Consensus 538 ~k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s 569 (1162)
++.+..+.+.++..++.++.+++.++...+..
T Consensus 121 l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~ 152 (501)
T 1wle_A 121 LRARGREIRKQLTLLYPKEAQLEEQFYLRALR 152 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666667777777777777665444
No 345
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=22.75 E-value=31 Score=43.74 Aligned_cols=31 Identities=10% Similarity=0.313 Sum_probs=0.0
Q ss_pred hhhccC-ChhhhHHHHHHHHhhcccccccccCC
Q 001081 891 ALFVHT-PAGELQRQIRSWLAENFEFLSVTGDD 922 (1162)
Q Consensus 891 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 922 (1162)
+..|.| |.|.. .+.+-|=.=.|.|..+--.+
T Consensus 897 ~~~~~~~~~~~~-~~~~kw~~~~~~~~~~~~~~ 928 (936)
T 4a2w_A 897 SFVMESTATGTQ-MDFQKWKSINSSLKNFDVEE 928 (936)
T ss_dssp ---------------------------------
T ss_pred eEEEEecCCCce-eeccccccCCcCcCCCCHHH
Confidence 445678 88887 55899988777776554333
No 346
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=22.69 E-value=61 Score=35.54 Aligned_cols=16 Identities=38% Similarity=0.445 Sum_probs=13.7
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
+|...|.+|+|||.++
T Consensus 100 vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTA 115 (297)
T ss_dssp EEEEECSSCSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5666799999999987
No 347
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=22.66 E-value=2.8e+02 Score=25.40 Aligned_cols=47 Identities=11% Similarity=0.258 Sum_probs=0.0
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 444 RDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQ 490 (1162)
Q Consensus 444 k~i~~~~~~el~~l~~eI~eLk~Ei~~Lr~~L~~~~eq~~~l~~Elq 490 (1162)
....-++...+..+..+|..|+..++.+.-++..+..+...++.++.
T Consensus 19 ~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 19 SQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
No 348
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=22.64 E-value=32 Score=36.76 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=15.3
Q ss_pred eeEeeeccCCCCCcccc
Q 001081 191 VSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 191 ~~IFAYGQTGSGKTyTM 207 (1162)
..++-||+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 67888999999999887
No 349
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=22.59 E-value=18 Score=36.79 Aligned_cols=17 Identities=29% Similarity=0.245 Sum_probs=14.9
Q ss_pred eEeeeccCCCCCccccc
Q 001081 192 SIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM~ 208 (1162)
.++-||+.|||||+.+.
T Consensus 5 i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 5 LTVITGPMYSGKTTELL 21 (184)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57789999999999984
No 350
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=22.48 E-value=20 Score=38.05 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=16.5
Q ss_pred ceeEeeeccCCCCCcccccc
Q 001081 190 NVSIFAYGQTHSGKTHTMEG 209 (1162)
Q Consensus 190 N~~IFAYGQTGSGKTyTM~G 209 (1162)
...++-||.+|||||..+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHH
Confidence 35788899999999998844
No 351
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=22.41 E-value=22 Score=36.15 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=13.5
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
++.-.|++|||||.++
T Consensus 22 i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999887
No 352
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=22.40 E-value=25 Score=40.40 Aligned_cols=34 Identities=18% Similarity=0.103 Sum_probs=21.7
Q ss_pred CCCCChHHHHHhhHHHHHHHhcCCceeEeeeccCCCCCccccc
Q 001081 166 GPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 166 ~~~asQeeVFe~V~PLV~svLdGyN~~IFAYGQTGSGKTyTM~ 208 (1162)
.+..-|.+.+ ..++.|.+ ++..|+||||||.+..
T Consensus 113 ~l~~~Q~~ai-------~~~~~~~~--~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 113 EPHWYQKDAV-------FEGLVNRR--RILNLPTSAGRSLIQA 146 (510)
T ss_dssp CCCHHHHHHH-------HHHHHHSE--EEEECCSTTTHHHHHH
T ss_pred CCCHHHHHHH-------HHHHhcCC--cEEEeCCCCCHHHHHH
Confidence 4444455544 33445544 4667999999999873
No 353
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=22.36 E-value=21 Score=38.40 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=16.6
Q ss_pred ceeEeeeccCCCCCccccc
Q 001081 190 NVSIFAYGQTHSGKTHTME 208 (1162)
Q Consensus 190 N~~IFAYGQTGSGKTyTM~ 208 (1162)
...||..|..|+||||+|.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp CEEEEEESSTTSSHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHH
Confidence 3569999999999999984
No 354
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=22.24 E-value=2.6e+02 Score=23.64 Aligned_cols=10 Identities=10% Similarity=0.185 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 001081 521 NAQLRNQVAQ 530 (1162)
Q Consensus 521 ~~qL~~ql~q 530 (1162)
+.++..++..
T Consensus 24 ~~~Le~~~~~ 33 (61)
T 1t2k_D 24 VQSLEKKAED 33 (61)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 355
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=22.21 E-value=37 Score=43.70 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHh-cCCceeEeeeccCCCCCccc
Q 001081 174 LFSDVQPFVQSAL-DGYNVSIFAYGQTHSGKTHT 206 (1162)
Q Consensus 174 VFe~V~PLV~svL-dGyN~~IFAYGQTGSGKTyT 206 (1162)
||........+.+ ++.|-||+..|.+|||||.+
T Consensus 155 ifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~ 188 (1010)
T 1g8x_A 155 IFAISDVAYRSMLDDRQNQSLLITGESGAGKTEN 188 (1010)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchH
No 356
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=22.02 E-value=38 Score=42.76 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=19.8
Q ss_pred cCCceeEeeeccCCCCCcccc
Q 001081 187 DGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 187 dGyN~~IFAYGQTGSGKTyTM 207 (1162)
++.|-||+..|.+|||||.+.
T Consensus 166 ~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEeCCCCCCchhhH
Confidence 699999999999999999986
No 357
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=22.00 E-value=1.9e+02 Score=32.62 Aligned_cols=16 Identities=19% Similarity=0.328 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 001081 545 RDSTIKTLQAKINSIE 560 (1162)
Q Consensus 545 ~e~eIe~L~~eL~eLe 560 (1162)
.+.+|+.|+++|.+|+
T Consensus 38 ~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 38 NQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 358
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=21.97 E-value=39 Score=43.39 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=19.9
Q ss_pred cCCceeEeeeccCCCCCcccc
Q 001081 187 DGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 187 dGyN~~IFAYGQTGSGKTyTM 207 (1162)
++.|-||+..|.+|||||.+.
T Consensus 143 ~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 143 DREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp HCCCEEEEEECBTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 699999999999999999986
No 359
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=21.89 E-value=41 Score=42.27 Aligned_cols=21 Identities=38% Similarity=0.483 Sum_probs=19.7
Q ss_pred cCCceeEeeeccCCCCCcccc
Q 001081 187 DGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 187 dGyN~~IFAYGQTGSGKTyTM 207 (1162)
++.|-||+..|.+|||||.+.
T Consensus 153 ~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 689999999999999999885
No 360
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=21.85 E-value=3.1e+02 Score=23.11 Aligned_cols=35 Identities=9% Similarity=0.237 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 524 LRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINS 558 (1162)
Q Consensus 524 L~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~e 558 (1162)
++.++..+......+..-+++...+|..|..+++.
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444444443
No 361
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=21.85 E-value=37 Score=43.68 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=17.8
Q ss_pred HHHHHhcCCceeEeeeccCCCCCcc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTH 205 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTy 205 (1162)
.+..+++|.| ++..++||||||.
T Consensus 64 ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 64 WAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHhCCC--EEEEcCCCCCHHH
Confidence 4556678876 5677899999994
No 362
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=21.83 E-value=21 Score=39.73 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=15.0
Q ss_pred cCCceeEeeeccCCCCCcccc
Q 001081 187 DGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 187 dGyN~~IFAYGQTGSGKTyTM 207 (1162)
.|. .+.-.|+||||||.++
T Consensus 170 ~g~--~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGK--NVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HTC--CEEEEESTTSCHHHHH
T ss_pred CCC--EEEEECCCCCCHHHHH
Confidence 465 4566799999999887
No 363
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=21.77 E-value=3.1e+02 Score=22.15 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 001081 549 IKTLQAKINSIES 561 (1162)
Q Consensus 549 Ie~L~~eL~eLe~ 561 (1162)
|.-|+.+|..|+.
T Consensus 33 iaylekeianlrk 45 (49)
T 3he5_A 33 IAYLEKEIANLRK 45 (49)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 364
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=21.52 E-value=27 Score=34.14 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=14.3
Q ss_pred eeEeeeccCCCCCcccc
Q 001081 191 VSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 191 ~~IFAYGQTGSGKTyTM 207 (1162)
..|+-.|..|||||+..
T Consensus 4 ~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36888999999999754
No 365
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=21.49 E-value=42 Score=42.08 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=19.9
Q ss_pred cCCceeEeeeccCCCCCcccc
Q 001081 187 DGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 187 dGyN~~IFAYGQTGSGKTyTM 207 (1162)
++.|-||+.-|.+|||||.+.
T Consensus 168 ~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 168 DRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEeCCCCCCCchHH
Confidence 699999999999999999986
No 366
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=21.49 E-value=4.8e+02 Score=23.98 Aligned_cols=18 Identities=11% Similarity=0.375 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001081 542 IQQRDSTIKTLQAKINSI 559 (1162)
Q Consensus 542 iqq~e~eIe~L~~eL~eL 559 (1162)
.+.+..+++.++.++++|
T Consensus 54 n~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 54 NRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444443
No 367
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.42 E-value=22 Score=41.94 Aligned_cols=49 Identities=24% Similarity=0.319 Sum_probs=27.8
Q ss_pred eeeceeeCCCCChHHHHHhh-HHHHH-HHhc--C--CceeEeeeccCCCCCcccc
Q 001081 159 FEFDRVYGPHVGQAELFSDV-QPFVQ-SALD--G--YNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 159 F~FDkVF~~~asQeeVFe~V-~PLV~-svLd--G--yN~~IFAYGQTGSGKTyTM 207 (1162)
.+||.|-+-+.--+++.+.| -|+.. ..+. | .--.|+-||+.|+|||++.
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 45666655443333343333 33322 2333 3 2346999999999999754
No 368
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=21.31 E-value=29 Score=34.40 Aligned_cols=22 Identities=23% Similarity=0.122 Sum_probs=16.5
Q ss_pred hcCCceeEeeeccCCCCCcccc
Q 001081 186 LDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 186 LdGyN~~IFAYGQTGSGKTyTM 207 (1162)
+.+..-.|.-.|.+|||||+..
T Consensus 4 ~~~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 4 EAKHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp --CCCEEEEEEECTTSCHHHHH
T ss_pred cccCceEEEEECCCCCCHHHHH
Confidence 3455667889999999999754
No 369
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=21.29 E-value=32 Score=39.40 Aligned_cols=16 Identities=19% Similarity=0.092 Sum_probs=13.8
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678899999999885
No 370
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=21.27 E-value=67 Score=40.42 Aligned_cols=51 Identities=22% Similarity=0.341 Sum_probs=34.8
Q ss_pred ceeeeceeeCCCCChHHHHHhh-HHHHH-HHhcCCc----eeEeeeccCCCCCcccc
Q 001081 157 KDFEFDRVYGPHVGQAELFSDV-QPFVQ-SALDGYN----VSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 157 k~F~FDkVF~~~asQeeVFe~V-~PLV~-svLdGyN----~~IFAYGQTGSGKTyTM 207 (1162)
...+||.|-+-+..-+++.+.| -|+-. ..+.++. ..|+-||+.|+|||...
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHH
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 3467888888776666666655 35432 3455443 36999999999999765
No 371
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=21.10 E-value=23 Score=34.72 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=13.9
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
+..-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5678999999999876
No 372
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=21.04 E-value=26 Score=35.22 Aligned_cols=16 Identities=38% Similarity=0.395 Sum_probs=14.0
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
+|+-.|.+|||||...
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6888999999999765
No 373
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=21.00 E-value=5.4e+02 Score=24.45 Aligned_cols=49 Identities=14% Similarity=0.237 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 508 YMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 563 (1162)
Q Consensus 508 ~~L~~k~k~~kEe~~qL~~ql~qllq~eeE~k~qiqq~e~eIe~L~~eL~eLe~QL 563 (1162)
..|+..+....+++..++...... ..++.+++.+++.|..+.+.|..+.
T Consensus 40 l~LE~~~s~le~e~~rlr~~~~~~-------~~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRLESKRL-------DARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-------hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444454444332222 3445555556666666655555443
No 374
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=20.70 E-value=2.8e+02 Score=32.48 Aligned_cols=31 Identities=10% Similarity=0.129 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001081 539 KMQIQQRDSTIKTLQAKINSIESQRNEALHS 569 (1162)
Q Consensus 539 k~qiqq~e~eIe~L~~eL~eLe~QL~e~~~s 569 (1162)
+.+..+.+.++..++.++.+++.++...+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (455)
T 2dq0_A 75 LAKSREIVKRIGELENEVEELKKKIDYYLWR 105 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666666777777777777665544
No 375
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=20.53 E-value=35 Score=40.97 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=18.1
Q ss_pred HHHHHhcCCceeEeeeccCCCCCcccc
Q 001081 181 FVQSALDGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 181 LV~svLdGyN~~IFAYGQTGSGKTyTM 207 (1162)
.+..++. +..++-.|..|||||+|+
T Consensus 197 Av~~~~~--~~~~~I~G~pGTGKTt~i 221 (574)
T 3e1s_A 197 VLDQLAG--HRLVVLTGGPGTGKSTTT 221 (574)
T ss_dssp HHHHHTT--CSEEEEECCTTSCHHHHH
T ss_pred HHHHHHh--CCEEEEEcCCCCCHHHHH
Confidence 3444443 346677899999999997
No 376
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=20.52 E-value=24 Score=36.53 Aligned_cols=16 Identities=19% Similarity=0.358 Sum_probs=13.2
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
++.-.|++|||||..+
T Consensus 25 ~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLI 40 (218)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999877
No 377
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=20.36 E-value=36 Score=39.30 Aligned_cols=16 Identities=25% Similarity=0.154 Sum_probs=13.3
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
.++..|+||||||...
T Consensus 23 ~vlv~a~TGsGKT~~~ 38 (459)
T 2z83_A 23 MTVLDLHPGSGKTRKI 38 (459)
T ss_dssp EEEECCCTTSCTTTTH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4567899999999884
No 378
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=20.31 E-value=3.4e+02 Score=23.21 Aligned_cols=11 Identities=27% Similarity=0.410 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 001081 521 NAQLRNQVAQL 531 (1162)
Q Consensus 521 ~~qL~~ql~ql 531 (1162)
+.+|..++..+
T Consensus 25 ~~~Le~~v~~L 35 (63)
T 2wt7_A 25 TDTLQAETDQL 35 (63)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33343333333
No 379
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=20.27 E-value=55 Score=35.76 Aligned_cols=20 Identities=35% Similarity=0.381 Sum_probs=16.0
Q ss_pred CCceeEeeeccCCCCCcccc
Q 001081 188 GYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 188 GyN~~IFAYGQTGSGKTyTM 207 (1162)
+....|.-.|.+|||||+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 44557788899999999866
No 380
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=20.24 E-value=45 Score=43.12 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=24.7
Q ss_pred HHHhhHHHHHHHh-cCCceeEeeeccCCCCCcccc
Q 001081 174 LFSDVQPFVQSAL-DGYNVSIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 174 VFe~V~PLV~svL-dGyN~~IFAYGQTGSGKTyTM 207 (1162)
||.-......+.+ ++.|-||+.-|.+|||||.+.
T Consensus 127 IfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 127 VFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHH
Confidence 5543333333333 699999999999999999986
No 381
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=20.22 E-value=27 Score=33.85 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=13.7
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
.|+-.|..|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5788999999999865
No 382
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=20.18 E-value=3.8e+02 Score=22.27 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001081 536 QEQKMQIQQRDSTIKTLQAKINSIESQR 563 (1162)
Q Consensus 536 eE~k~qiqq~e~eIe~L~~eL~eLe~QL 563 (1162)
++.+..+.+....++.....|..++.++
T Consensus 29 ~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 29 LKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444555555544433
No 383
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.18 E-value=1.8e+02 Score=25.82 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001081 547 STIKTLQAKINSIESQR 563 (1162)
Q Consensus 547 ~eIe~L~~eL~eLe~QL 563 (1162)
.+++.|...+..|..++
T Consensus 50 ~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 50 LENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 384
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=20.11 E-value=28 Score=33.33 Aligned_cols=16 Identities=19% Similarity=0.059 Sum_probs=13.5
Q ss_pred eEeeeccCCCCCcccc
Q 001081 192 SIFAYGQTHSGKTHTM 207 (1162)
Q Consensus 192 ~IFAYGQTGSGKTyTM 207 (1162)
.|+-.|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999764
Done!