Your job contains 1 sequence.
>001082
MTKTEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLILPSLDRER
GSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMI
SGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWR
KLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILD
GEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKER
HELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEG
IVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVALAE
RPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKER
PDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVEL
VHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSD
MVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRGDVIH
YSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVD
RSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFH
GGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAK
EQKSEEYEYSLKPTGMQESYLELCEEDLDMEEPSSTLETSDKQNVSSFPDGDGKQRGTRG
VSPASPKREGKRKRGRPAGGSAKKRKSTVNLARRKRPHVRNKPSKIYQNESDESNASDET
EKKEEINREENHEDREMDDEENLETRQTNVVEDLESLDRGKALQQEVVKDFGKEKQTVRA
PDIEMRERYHSKDSETTDKQQVDAVQAMLLDMIPSLGMKNEKTTNPIPKEESSSAEPSAE
PTKKKKVSYKDIASKLLKDW
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001082
(1160 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2175544 - symbol:ATLIG4 species:3702 "Arabidop... 3542 0. 2
DICTYBASE|DDB_G0292760 - symbol:lig4 "BRCT domain-contain... 650 5.5e-93 2
UNIPROTKB|Q23RI5 - symbol:TTHERM_00387050 "DNA ligase" sp... 735 2.6e-85 2
ASPGD|ASPL0000057134 - symbol:AN0097 species:162425 "Emer... 776 2.8e-82 2
UNIPROTKB|Q5BH83 - symbol:lig4 "DNA ligase 4" species:227... 776 2.8e-82 2
UNIPROTKB|Q90YB1 - symbol:LIG4 "DNA ligase 4" species:903... 765 4.6e-78 2
UNIPROTKB|F1P275 - symbol:LIG4 "DNA ligase" species:9031 ... 764 5.9e-78 2
UNIPROTKB|Q5R6L3 - symbol:DNL4 "DNA ligase 4" species:960... 775 5.5e-77 1
UNIPROTKB|P49917 - symbol:LIG4 "DNA ligase 4" species:960... 771 1.5e-76 1
UNIPROTKB|F1RLP1 - symbol:LIG4 "DNA ligase" species:9823 ... 758 3.7e-75 1
UNIPROTKB|F1MB07 - symbol:LIG4 "DNA ligase" species:9913 ... 752 2.0e-74 1
UNIPROTKB|E2R0G7 - symbol:LIG4 "DNA ligase" species:9615 ... 747 7.7e-74 1
POMBASE|SPCC1183.05c - symbol:lig4 "DNA ligase Lig4" spec... 712 2.7e-72 2
RGD|1304639 - symbol:Lig4 "ligase IV, DNA, ATP-dependent"... 732 4.2e-72 1
MGI|MGI:1335098 - symbol:Lig4 "ligase IV, DNA, ATP-depend... 729 9.2e-72 1
ZFIN|ZDB-GENE-070820-10 - symbol:lig4 "ligase IV, DNA, AT... 710 1.3e-69 1
UNIPROTKB|Q7SB49 - symbol:lig-4 "DNA ligase 4" species:36... 388 3.6e-62 5
SGD|S000005531 - symbol:DNL4 "DNA ligase required for non... 563 2.6e-51 1
UNIPROTKB|Q75CA4 - symbol:LIG4 "DNA ligase 4" species:284... 554 3.1e-50 1
FB|FBgn0030506 - symbol:Lig4 "Ligase4" species:7227 "Dros... 293 4.5e-46 2
UNIPROTKB|A8JIN2 - symbol:DNL4 "DNA ligase IV" species:30... 381 1.1e-33 3
UNIPROTKB|E2RNT6 - symbol:LIG3 "DNA ligase" species:9615 ... 295 2.4e-33 2
UNIPROTKB|J9P597 - symbol:LIG3 "DNA ligase" species:9615 ... 295 2.6e-33 2
UNIPROTKB|F1P394 - symbol:LIG3 "DNA ligase" species:9031 ... 298 1.1e-32 2
CGD|CAL0001558 - symbol:LIG4 species:5476 "Candida albica... 276 8.4e-32 4
UNIPROTKB|P52496 - symbol:LIG4 "DNA ligase 4" species:237... 276 8.4e-32 4
UNIPROTKB|F1MQY1 - symbol:LIG3 "DNA ligase" species:9913 ... 286 9.9e-32 2
UNIPROTKB|P49916 - symbol:LIG3 "DNA ligase 3" species:960... 281 8.8e-31 2
RGD|1309875 - symbol:Lig3 "ligase III, DNA, ATP-dependent... 271 9.8e-31 2
UNIPROTKB|D4A2K2 - symbol:Lig3 "DNA ligase" species:10116... 271 1.0e-30 2
UNIPROTKB|D4A837 - symbol:Lig3 "DNA ligase" species:10116... 271 1.4e-30 3
MGI|MGI:109152 - symbol:Lig3 "ligase III, DNA, ATP-depend... 273 5.8e-30 3
UNIPROTKB|Q8TMT1 - symbol:lig2 "DNA ligase 2" species:188... 266 2.6e-29 3
UNIPROTKB|Q24FD9 - symbol:TTHERM_00865240 "DNA ligase" sp... 347 3.6e-28 1
UNIPROTKB|Q8TSR7 - symbol:lig1 "DNA ligase 1" species:188... 339 5.8e-27 2
WB|WBGene00002986 - symbol:lig-4 species:6239 "Caenorhabd... 337 7.4e-27 1
UNIPROTKB|Q95YE6 - symbol:lig-4 "Protein LIG-4" species:6... 337 7.4e-27 1
UNIPROTKB|O67398 - symbol:lig "Probable DNA ligase" speci... 239 1.9e-26 2
DICTYBASE|DDB_G0283857 - symbol:lig3 "DNA ligase III" spe... 244 6.8e-25 3
UNIPROTKB|A8JH25 - symbol:LIG1 "DNA ligase" species:3055 ... 215 7.2e-25 2
UNIPROTKB|Q5B061 - symbol:AN6069.2 "DNA ligase" species:2... 311 1.5e-23 2
ASPGD|ASPL0000001880 - symbol:AN6069 species:162425 "Emer... 311 1.8e-23 2
ZFIN|ZDB-GENE-030131-8453 - symbol:lig3 "ligase III, DNA,... 278 2.0e-20 1
FB|FBgn0262619 - symbol:DNA-ligI "DNA ligase I" species:7... 248 3.4e-17 2
GENEDB_PFALCIPARUM|MAL13P1.22 - symbol:MAL13P1.22 "DNA li... 234 1.6e-15 1
UNIPROTKB|Q8IES4 - symbol:PfLigI "DNA ligase" species:363... 234 1.6e-15 1
SGD|S000002323 - symbol:CDC9 "DNA ligase found in the nuc... 225 1.6e-15 2
CGD|CAL0006047 - symbol:orf19.6155 species:5476 "Candida ... 220 3.6e-15 2
FB|FBgn0038035 - symbol:lig3 "DNA ligase III" species:722... 247 3.7e-15 3
POMBASE|SPAC20G8.01 - symbol:cdc17 "ATP-dependent DNA lig... 226 8.7e-15 1
UNIPROTKB|Q7RYJ3 - symbol:NCU06481 "DNA ligase" species:3... 214 1.0e-14 3
UNIPROTKB|Q7RPC6 - symbol:PY01533 "DNA ligase" species:73... 218 1.7e-14 2
UNIPROTKB|Q980T8 - symbol:lig "DNA ligase" species:273057... 212 6.1e-14 2
UNIPROTKB|Q75CS4 - symbol:ACL155W "DNA ligase" species:28... 182 1.1e-13 2
POMBASE|SPBC713.06 - symbol:adl1 "DNA ligase (predicted)"... 181 1.9e-13 2
UNIPROTKB|Q0IWT4 - symbol:Os10g0489200 "DNA ligase" speci... 221 5.4e-13 2
UNIPROTKB|A8IAY8 - symbol:CHLREDRAFT_165757 "Predicted pr... 104 6.7e-13 6
UNIPROTKB|F6URE1 - symbol:LIG1 "DNA ligase" species:9615 ... 180 9.8e-13 2
MGI|MGI:101789 - symbol:Lig1 "ligase I, DNA, ATP-dependen... 190 1.2e-12 2
UNIPROTKB|E2QTV4 - symbol:LIG1 "Uncharacterized protein" ... 180 2.6e-12 2
UNIPROTKB|Q9FCB1 - symbol:lig "Probable DNA ligase" speci... 160 4.2e-12 3
UNIPROTKB|A4IFC8 - symbol:LIG1 "DNA ligase" species:9913 ... 185 5.1e-12 2
DICTYBASE|DDB_G0274493 - symbol:lig1 "DNA ligase I" speci... 206 5.4e-12 2
TAIR|locus:2010207 - symbol:AT1G49250 species:3702 "Arabi... 200 5.5e-12 2
UNIPROTKB|F1M624 - symbol:Lig1 "DNA ligase" species:10116... 188 6.2e-12 2
UNIPROTKB|F1M8E6 - symbol:Lig1 "DNA ligase" species:10116... 188 6.3e-12 2
TAIR|locus:2199953 - symbol:LIG1 "DNA ligase 1" species:3... 206 9.3e-12 2
UNIPROTKB|F1RL99 - symbol:LIG1 "DNA ligase" species:9823 ... 184 1.0e-11 2
UNIPROTKB|Q2TB12 - symbol:LIG1 "DNA ligase" species:9606 ... 179 2.0e-11 2
UNIPROTKB|F5GZ28 - symbol:LIG1 "DNA ligase" species:9606 ... 179 2.3e-11 2
UNIPROTKB|B4DTU4 - symbol:LIG1 "DNA ligase" species:9606 ... 179 2.6e-11 2
UNIPROTKB|P18858 - symbol:LIG1 "DNA ligase 1" species:960... 179 2.8e-11 2
RGD|621424 - symbol:Lig1 "ligase I, DNA, ATP-dependent" s... 177 3.6e-11 2
UNIPROTKB|Q7S2S0 - symbol:NCU09706 "DNA ligase" species:3... 148 9.6e-11 2
ASPGD|ASPL0000077573 - symbol:AN4883 species:162425 "Emer... 159 3.3e-10 2
UNIPROTKB|Q5B3J7 - symbol:AN4883.2 "DNA ligase" species:2... 159 3.3e-10 2
WB|WBGene00002985 - symbol:lig-1 species:6239 "Caenorhabd... 189 1.2e-09 3
UNIPROTKB|Q27474 - symbol:lig-1 "DNA ligase 1" species:62... 189 1.2e-09 3
UNIPROTKB|K7ERZ5 - symbol:LIG3 "DNA ligase 3" species:960... 176 1.2e-09 1
UNIPROTKB|G4N7T1 - symbol:MGG_06370 "DNA ligase" species:... 167 5.6e-09 3
UNIPROTKB|P95096 - symbol:lig "Probable DNA ligase" speci... 152 6.1e-09 3
UNIPROTKB|G4NHG0 - symbol:MGG_03854 "DNA ligase" species:... 138 8.1e-09 3
UNIPROTKB|H9L029 - symbol:LIG1 "Uncharacterized protein" ... 166 2.0e-08 1
UNIPROTKB|H9L3I6 - symbol:LIG1 "Uncharacterized protein" ... 166 2.1e-08 1
UNIPROTKB|I3L9T2 - symbol:I3L9T2 "Uncharacterized protein... 159 4.6e-08 1
UNIPROTKB|G4MQC2 - symbol:MGG_10627 "ATP-dependent DNA li... 164 5.8e-08 1
UNIPROTKB|Q0JKB6 - symbol:Os01g0685500 "Os01g0685500 prot... 141 2.8e-06 1
UNIPROTKB|A8J921 - symbol:CHLREDRAFT_176829 "Predicted pr... 111 0.00042 2
>TAIR|locus:2175544 [details] [associations]
symbol:ATLIG4 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003909 "DNA ligase
activity" evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0032807 "DNA ligase IV complex" evidence=IBA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0006974 "response
to DNA damage stimulus" evidence=IMP] [GO:0010165 "response to
X-ray" evidence=IMP] [GO:0015074 "DNA integration" evidence=IMP]
[GO:0000723 "telomere maintenance" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
InterPro:IPR001357 Pfam:PF00533 GO:GO:0009506 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0048046 GO:GO:0006260 EMBL:AB023042 GO:GO:0006310
GO:GO:0006302 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0010165
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
TIGRFAMs:TIGR00574 EMBL:AF233527 IPI:IPI00524567 RefSeq:NP_568851.2
UniGene:At.49182 UniGene:At.69713 ProteinModelPortal:Q9LL84
SMR:Q9LL84 IntAct:Q9LL84 STRING:Q9LL84 PaxDb:Q9LL84 PRIDE:Q9LL84
EnsemblPlants:AT5G57160.1 GeneID:835822 KEGG:ath:AT5G57160
GeneFarm:4927 TAIR:At5g57160 HOGENOM:HOG000083793 InParanoid:Q9LL84
KO:K10777 OMA:HMCPSTK PhylomeDB:Q9LL84 ProtClustDB:CLSN2680547
Genevestigator:Q9LL84 GermOnline:AT5G57160 GO:GO:0032807
Uniprot:Q9LL84
Length = 1219
Score = 3542 (1251.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 673/919 (73%), Positives = 781/919 (84%)
Query: 4 TEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLILPSLDRERGSY 63
TEE + VLVSLFNWIQK+K +++KRSKFRKFLDTYC DYF A+RLI+PSLDRERGSY
Sbjct: 2 TEEIKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCKPSDYFVAVRLIIPSLDRERGSY 61
Query: 64 GLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAP---NAGNFPMVAAEVLQRRQGMI 120
GLKESVLA CLIDALG+S+D+ DAVRL+NWRKGG A NAGNF ++AAEVLQRRQGM
Sbjct: 62 GLKESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGMA 121
Query: 121 SGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS 180
SGGLTIKELNDLLDRLASSENRAEK VLSTLI+KTNAQEMKW+I IILKDLKLG+SEKS
Sbjct: 122 SGGLTIKELNDLLDRLASSENRAEKTLVLSTLIQKTNAQEMKWVIRIILKDLKLGMSEKS 181
Query: 181 IFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWR 240
IF EFHPDAEDLFNVTCDLKLVCEKL+DR+QRHKRQDIEVGKAVRPQLAMRIGD +AAW+
Sbjct: 182 IFQEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRIGDVNAAWK 241
Query: 241 KLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILD 300
KLHGK+VV ECKFDGDRIQIHKNG++IHYFSR+FLDHSEY HAMS +I QN+LVD+CILD
Sbjct: 242 KLHGKDVVAECKFDGDRIQIHKNGTDIHYFSRNFLDHSEYAHAMSDLIVQNILVDKCILD 301
Query: 301 GEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKER 360
GEMLVWDTSLNRFAEFGSNQEIAKAAR+GL S +Q LCY AFDVLYVGDTSVIHQSLKER
Sbjct: 302 GEMLVWDTSLNRFAEFGSNQEIAKAAREGLDSHKQ-LCYVAFDVLYVGDTSVIHQSLKER 360
Query: 361 HELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEG 420
HELL+KVVKP KGRLE LVP+ GLN H RP GEP WS+V H +VE+FFKET+ENRDEG
Sbjct: 361 HELLKKVVKPLKGRLEVLVPEGGLNVH-RPSGEPSWSIVVHAAADVERFFKETVENRDEG 419
Query: 421 IVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIXXXXXXXXXXXEVAQFLVALAE 480
IVLKDL SKWEPGDRSGKW+KLKPEYIRAG+DLDVLII EVAQFLVALA+
Sbjct: 420 IVLKDLESKWEPGDRSGKWMKLKPEYIRAGADLDVLIIGGYYGSGRRGGEVAQFLVALAD 479
Query: 481 RPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKER 540
R + YPRRF+SFCRVGTGLSD+EL+ VV+KLKPYFRK E+PK+APPSFYQVTN+SKER
Sbjct: 480 RAEANVYPRRFMSFCRVGTGLSDDELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKER 539
Query: 541 PDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVEL 600
PDVWI+SPEKSIILSITSDIRTIRSEVF APYSLRFPRID+VRYDKPWH+CLDVQ+FVEL
Sbjct: 540 PDVWIDSPEKSIILSITSDIRTIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVEL 599
Query: 601 VHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSD 660
V+SSNGTTQK KE QD+ PK +SS++GEKKNVS+VPS F+QTDVSDIKG+TSIFS+
Sbjct: 600 VNSSNGTTQKQKESESTQDN-PKVNKSSKRGEKKNVSLVPSQFIQTDVSDIKGKTSIFSN 658
Query: 661 MVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRGDVIH 720
M+FYFVNVP ++SL++ HKMVVENGG FSMNLNNSVTHC+AA++ G+KY+AAKR+ DVIH
Sbjct: 659 MIFYFVNVPRSHSLETFHKMVVENGGKFSMNLNNSVTHCIAAESSGIKYQAAKRQRDVIH 718
Query: 721 YSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVD 780
+SWVLDCCS Y+LHL+D+S+ KLQ+++DEFSD Y+WDLDL +KQ+LSN
Sbjct: 719 FSWVLDCCSRNKMLPLLPKYFLHLTDASRTKLQDDIDEFSDSYYWDLDLEGLKQVLSNAK 778
Query: 781 RSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVXXXXXXXXXXXEISFH 840
+SED K+IDYYKKK CP+ +WSC CC+YFY ++ LS + E E+
Sbjct: 779 QSEDSKSIDYYKKKLCPEKRWSCLLSCCVYFYPYSQTLSTEEEALLGIMAKRLMLEVLMA 838
Query: 841 GGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAK 900
GGKV NNLA+A+H+VVL++ ++F +++SF+ EK LL K+LHVV S WLE+ L +
Sbjct: 839 GGKVSNNLAHASHLVVLAMAEEPLDFTLVSKSFSEMEKRLLLKKRLHVVSSHWLEESLQR 898
Query: 901 EQKSEEYEYSLKPTGMQES 919
E+K E Y+L+P M+ES
Sbjct: 899 EEKLCEDVYTLRPKYMEES 917
Score = 87 (35.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 42/183 (22%), Positives = 77/183 (42%)
Query: 993 RRKRPHVRNKPSKIYQNESDESNASXXXXXXXXXXXXXXXXXXXMDDEENLETRQTNVVE 1052
R +R K +KI +ESDE++ +++EE TR+ ++ +
Sbjct: 1040 RVQRSRRGKKAAKIGGDESDENDELDGNNNVSADAEEGNAAGRSVENEE---TREPDIAK 1096
Query: 1053 DLESLDRGKALQ-QEVVKDFG--------KEKQTVRAPDIE--MRERY---HSKDSETTD 1098
ES R + +E ++D KEK + ++ + + + K +ET++
Sbjct: 1097 YTESQQRDNTVAVEEALQDSRNAKTEMDMKEKLQIHEDPLQAMLMKMFPIPSQKTTETSN 1156
Query: 1099 KQQVDAVQAMLL-DMIPSLGMKNEKTTNPIPKXXXXXXXXXXXXTKKKKVSYKDIASKLL 1157
+ + +A + + S K + T+ KKKKVSY+D+A +LL
Sbjct: 1157 RTTGEYRKANVSGECESSEKRKLDAETDNTSVNAGAESDVVPPLVKKKKVSYRDVAGELL 1216
Query: 1158 KDW 1160
KDW
Sbjct: 1217 KDW 1219
Score = 50 (22.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 987 STVNLARRKRPHVRNKPSKIYQNESDESNAS 1017
ST +L R +R + +PSKI +E++ES+AS
Sbjct: 968 STNSLQRVQRRRGK-QPSKISGDETEESDAS 997
>DICTYBASE|DDB_G0292760 [details] [associations]
symbol:lig4 "BRCT domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0005958 "DNA-dependent
protein kinase-DNA ligase 4 complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA;ISS] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0000012 "single strand break repair" evidence=ISS] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032807 "DNA ligase IV
complex" evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] [GO:0006273 "lagging
strand elongation" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016874 "ligase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 Pfam:PF11411 PROSITE:PS50160 InterPro:IPR001357
dictyBase:DDB_G0292760 Pfam:PF00533 GO:GO:0005524 GO:GO:0005694
GenomeReviews:CM000155_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0000012 GO:GO:0005958
GO:GO:0006303 GO:GO:0006289 EMBL:AAFI02000196 GO:GO:0006273
eggNOG:COG1793 GO:GO:0003910 Gene3D:1.10.3260.10 TIGRFAMs:TIGR00574
KO:K10777 OMA:HMCPSTK GO:GO:0032807 HSSP:Q08387 RefSeq:XP_629472.1
ProteinModelPortal:Q54CR9 EnsemblProtists:DDB0232255 GeneID:8628862
KEGG:ddi:DDB_G0292760 ProtClustDB:CLSZ2728715 Uniprot:Q54CR9
Length = 1088
Score = 650 (233.9 bits), Expect = 5.5e-93, Sum P(2) = 5.5e-93
Identities = 174/602 (28%), Positives = 307/602 (50%)
Query: 217 DIEVGKAVRPQLAMR--IGDAHAAWRK-LHGKEVVIECKFDGDRIQIHKNGSEIHYFSRS 273
+I++ ++P LA R I + + + V+E KFDG+RIQIHK+G ++ YFSR+
Sbjct: 378 EIKLFNPIKPMLANRQSIDNLSMILNSAISATQFVVEKKFDGERIQIHKDGEQVKYFSRN 437
Query: 274 FLDHSE-YGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSS 332
D + YG + I+++ VL +RCILDGE++VWD+ RF +FG+ + +A +DG+S
Sbjct: 438 SNDSTGIYGSMFTPIVKECVLAERCILDGELIVWDSISQRFEDFGNLKTLA-LNKDGISG 496
Query: 333 DR--------QVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGL 384
+ LC+ AFD+L+V D SV++ L +R LL++ V + E
Sbjct: 497 SGDPLGINYGKQLCFIAFDILFVKDQSVMNLPLMQRLMLLKRCVTIKSKQFE-------- 548
Query: 385 NSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKP 444
+ Q +++ ++ + I NR+EG++LK+L S + P +R KW+K+KP
Sbjct: 549 ---ISEQ------TTVNSISQIISLLESAIINREEGLMLKNLHSLYVPAERKDKWVKIKP 599
Query: 445 EYI----RAGSDLDVLIIXXXXXXXXXXX--EVAQFLVA---LAERPAPD-----TYPRR 490
EYI DLD++II ++ F++ +A+ D T+ +
Sbjct: 600 EYIDGMGNGADDLDLVIIGGYYGSGLNRRGGTISHFMLGVPFIADSTDTDIDDESTFDKN 659
Query: 491 --FISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESP 548
F SFC+VG+G +D +L ++ L P++ + K PPS Q+ KE+PDVWI+
Sbjct: 660 VIFYSFCKVGSGYTDIQLKSLQKDLDPHWNNFSTSK--PPSIIQLAEPFKEKPDVWIDPR 717
Query: 549 EKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELV--HSSNG 606
S +L I + + + ++ + Y+LRFPR+ ++R DK W DC + ++L +S+N
Sbjct: 718 VYSKVLQIKAS-QIVVTDKYKCGYTLRFPRVLKIRDDKGWKDCCSHEEIIDLFTNYSTNL 776
Query: 607 TTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSI----VPSHFLQTDVSDIKGETSIFSDMV 662
++ EYG K K+ + S+K + ++ V S F TD S I +IF +
Sbjct: 777 NFKRDHEYGDGSGGKNKKLKKSKKTTNQLLADSGLKVLSIFQDTDTSGIIPTQNIFQGIE 836
Query: 663 FYFVNVPPA-YSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG--DVI 719
+ Y+ L M+VE GG+ + + T+ V + + +K + + G D++
Sbjct: 837 ICVIKGSSGEYTKSKLEIMIVEMGGS-KVQYPSRNTNYVISSKEVVKIQNLIQSGFIDIV 895
Query: 720 HYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNV 779
++W++DC + Y + ++S+KK+ + D+F D Y + +K + +
Sbjct: 896 SFNWIVDCYNEKRLVPLGPKYMIFSTESTKKRFLLDSDQFGDSYINETTEQSLKDSFNQI 955
Query: 780 DR 781
D+
Sbjct: 956 DK 957
Score = 353 (129.3 bits), Expect = 5.5e-93, Sum P(2) = 5.5e-93
Identities = 75/206 (36%), Positives = 120/206 (58%)
Query: 15 LFNWIQKTKPAAKKRSKFRKFLDTYCDSVD-YFSALRLILPSLDRERGSYGLKESVLANC 73
L N I + K++ KF++ Y D + ++ LRLILP LD++R SYGLKE LA
Sbjct: 143 LMNRIINDTKISNKKNYLEKFMNHYKDEPNNFYQLLRLILPQLDKDRNSYGLKEKTLARL 202
Query: 74 LIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMISGGLTIK--ELND 131
++ L +S +S DA+RL+NW+K G+F L+ R +G + + ++N+
Sbjct: 203 YVELLNISPESVDAMRLLNWKKSTNDEIGGDFGTAVYLSLKNRCNNDNGRIKVSMGDINE 262
Query: 132 LLDRLASS-ENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAE 190
LD+L+ ++ K+S+L +++ T AQE KW + IILK++K G+S+ FHPDA
Sbjct: 263 SLDQLSQPLTDKKTKVSILKKVLRSTTAQEQKWFVRIILKEMKNGLSDNITLKFFHPDAI 322
Query: 191 DLFNVTCDLKLVCEKLKDRNQRHKRQ 216
D FN+T +L+LVC L Q +++
Sbjct: 323 DHFNITSNLRLVCTNLFYMTQSKQKE 348
Score = 343 (125.8 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 100/388 (25%), Positives = 178/388 (45%)
Query: 491 FISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEK 550
F SFC+VG+G +D +L ++ L P++ + K PPS Q+ KE+PDVWI+
Sbjct: 662 FYSFCKVGSGYTDIQLKSLQKDLDPHWNNFSTSK--PPSIIQLAEPFKEKPDVWIDPRVY 719
Query: 551 SIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELV--HSSNGTT 608
S +L I + + + ++ + Y+LRFPR+ ++R DK W DC + ++L +S+N
Sbjct: 720 SKVLQIKAS-QIVVTDKYKCGYTLRFPRVLKIRDDKGWKDCCSHEEIIDLFTNYSTNLNF 778
Query: 609 QKGKEYGGLQDDKPKQFRSSRKGEKKNVSI----VPSHFLQTDVSDIKGETSIFSDMVFY 664
++ EYG K K+ + S+K + ++ V S F TD S I +IF +
Sbjct: 779 KRDHEYGDGSGGKNKKLKKSKKTTNQLLADSGLKVLSIFQDTDTSGIIPTQNIFQGIEIC 838
Query: 665 FVNVPPA-YSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG--DVIHY 721
+ Y+ L M+VE GG+ + + T+ V + + +K + + G D++ +
Sbjct: 839 VIKGSSGEYTKSKLEIMIVEMGGS-KVQYPSRNTNYVISSKEVVKIQNLIQSGFIDIVSF 897
Query: 722 SWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDR 781
+W++DC + Y + ++S+KK+ + D+F D Y + +K + +D+
Sbjct: 898 NWIVDCYNEKRLVPLGPKYMIFSTESTKKRFLLDSDQFGDSYINETTEQSLKDSFNQIDK 957
Query: 782 SEDPKTIDYYK---------KKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVXXXXXXXX 832
+ K + KY WS F Y + + +
Sbjct: 958 LKLKKQLSINSTTTTTTTSISKYFSNCWWSLFKEFTFYL-DLYQVVGEKSTLIENNNLEL 1016
Query: 833 XXXEISFHGGKVCNNLANA-THVVVLSV 859
I F+GGK+ N THVV+ S+
Sbjct: 1017 SNLNIQFYGGKISIEFNNKITHVVLDSL 1044
Score = 40 (19.1 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
Identities = 15/68 (22%), Positives = 30/68 (44%)
Query: 617 LQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDS 676
+ K K+ + +K E+K + Q D+ K E +F+ + N S+D+
Sbjct: 341 MTQSKQKELKDKQKLEEKENLLKQQQQQQNDLDIYKLEIKLFNPIKPMLAN---RQSIDN 397
Query: 677 LHKMVVEN 684
L M++ +
Sbjct: 398 L-SMILNS 404
>UNIPROTKB|Q23RI5 [details] [associations]
symbol:TTHERM_00387050 "DNA ligase" species:312017
"Tetrahymena thermophila SB210" [GO:0003910 "DNA ligase (ATP)
activity" evidence=IBA] [GO:0005694 "chromosome" evidence=IBA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273 "lagging
strand elongation" evidence=IBA] [GO:0006289 "nucleotide-excision
repair" evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0032807 "DNA ligase IV
complex" evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
Pfam:PF11411 PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
GO:GO:0005524 GO:GO:0005694 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006303 GO:GO:0006289
GO:GO:0006273 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K10777 GO:GO:0032807
EMBL:GG662644 RefSeq:XP_001019308.1 UniGene:Tth.9167
ProteinModelPortal:Q23RI5 EnsemblProtists:EAR99063 GeneID:7825974
KEGG:tet:TTHERM_00387050 ProtClustDB:CLSZ2445781 Uniprot:Q23RI5
Length = 1026
Score = 735 (263.8 bits), Expect = 2.6e-85, Sum P(2) = 2.6e-85
Identities = 218/723 (30%), Positives = 363/723 (50%)
Query: 5 EETEVIVLVSLFNWIQKTKPAAKKRSKF-RKFLD-TY----CDSVDYFSALRLILPSLDR 58
E+T LV +N +Q++K +K KF ++F+D T+ C S F+ LRLI+P D+
Sbjct: 106 EKTLFSFLVKFYNQVQQSKKGQRK--KFVQRFIDSTFKTNRCPSYT-FTILRLIMPHHDK 162
Query: 59 ERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPN---AGNFPMVAAEVLQR 115
+R +YGL LA L + +S+D +L+N+++ N G+F V VLQ
Sbjct: 163 QRLNYGLNYKNLAKVLSEVFALSEDKRQ--QLLNYKRP-LKDNQQVVGDFGEVVQNVLQA 219
Query: 116 RQGMISGGLTIKELNDLLDRLASSENR--AEKISVLSTLIKKTNAQEMKWIIMIILKDLK 173
+ LTI +++ LD LA +NR A K VL +K ++E+KWI +ILKDL
Sbjct: 220 FTQKAT--LTINDVDRCLDELAQPQNRDLASKEKVLRNCLKNATSEEIKWISRLILKDLN 277
Query: 174 LGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDI-EVGKAVRPQLAMRI 232
LGI+ + I FHPDA LFN T L VC++ D N HK ++ + ++P LA R
Sbjct: 278 LGINHEIILALFHPDAVVLFNSTSSLWEVCKEFVDPN--HKLSNVLRLFHPIKPMLAGR- 334
Query: 233 GDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNV 292
+ L GK ++E KFDG+RIQ H + + +F+R+ +++ M + + +++
Sbjct: 335 KTLKSIEAILKGKNYLVETKFDGERIQCHVSPESLMFFTRNSNNYTNIYERMIEHVRRSL 394
Query: 293 --LVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDT 350
V CILDGEM+V + + +FG N+ +A D D +CY FD+LY+
Sbjct: 395 KDAVHSCILDGEMVVVNKITGQRVQFGLNKTVAMERED----DELCICYKIFDILYLKT- 449
Query: 351 SVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFF 410
+ KE + L + ++ K LE L+ + + + E + +++++ F
Sbjct: 450 ----KDNKE-YALTEYTLQYRKKILENLIDNQ------QDRVEVIFGREYSDINDILTEF 498
Query: 411 KETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIXXXXXXXXX-- 467
E I DEGIV+K L + + P DRS KW+K+K +Y D LD+++I
Sbjct: 499 NEAIHRNDEGIVIKQLDTLYYPDDRSDKWIKMKGDYYEGIIDTLDLIVIGGYFGEKSYKI 558
Query: 468 ------XXEVAQFLVALAER-PAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKY 520
+ +LVA+A++ + + F +VG G + + + +++ + +
Sbjct: 559 NGIGDWTDHITHYLVAVAKKIDLQNPSNSILVPFAKVGAGFTARDYADIKARMRDQWVRT 618
Query: 521 EYPKRAPPSFYQVTN-NSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRI 579
+ + P Q K++PD +I SP+ S+IL I + I+S + Y+LRFPR
Sbjct: 619 NHSNKTPSFIIQNWKPGEKDKPDAYILSPQNSLILEIRAT-EIIQSSQYPTNYTLRFPRF 677
Query: 580 DRVRYDKPWHDCLDVQSFVELVHS------------SNGTTQKGKEYGGLQDDKPK---- 623
++ R DK W DC+ +E+ + N + ++ E GG K K
Sbjct: 678 EKFRRDKDWFDCMKFNEIIEMTQNLKKKEQKESDKEDNASDEEQDENGGKLKKKRKGQNG 737
Query: 624 -QFRSSRKGEKKN--VSIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKM 680
+ +R+G K N + V + +L DVSD+K E++IF++ VF +N+P SL S K+
Sbjct: 738 EEIEVNRQGRKPNWKTNKVMAQYLDIDVSDVKVESNIFNNFVFNIINLPHEVSL-SEEKI 796
Query: 681 VVE 683
++E
Sbjct: 797 LLE 799
Score = 171 (65.3 bits), Expect = 2.6e-85, Sum P(2) = 2.6e-85
Identities = 77/308 (25%), Positives = 134/308 (43%)
Query: 605 NGTTQKGKEYGGLQDDKPKQFRSSRKGEKKN--VSIVPSHFLQTDVSDIKGETSIFSDMV 662
NG K K G Q+ + + +R+G K N + V + +L DVSD+K E++IF++ V
Sbjct: 724 NGGKLKKKRKG--QNGE--EIEVNRQGRKPNWKTNKVMAQYLDIDVSDVKVESNIFNNFV 779
Query: 663 FYFVNVPPAYSLDS---------LHKMVVENGGTFSMNLNNSVTHCVAA--DNKGLKYEA 711
F +N+P SL + K +V NGG N +N VTH +A+ D K ++
Sbjct: 780 FNIINLPHEVSLSEEKILLEKAQIEKGIVANGGKKVQNDSNLVTHYIASHYDFK-VQVIG 838
Query: 712 AKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLAD 771
+ +V+ WV DC Y ++ D ++ + D++ D Y+ D+D +
Sbjct: 839 DHYKVNVLSLQWVKDCIKKKTLLDYSPRYIIYGQDQLLERNKLLYDQYGDSYYKDVDEDE 898
Query: 772 IKQLLSN--VDRSEDP----KTIDYYKKKYCPQDKW---SCF-HGCCIYFYHSTEPLSPD 821
+ +L + +D+ E+ + + K CF G FY++ + L+ D
Sbjct: 899 LLDILKSMKIDQIEEEFQENEEFEEAVKDIISMKNQLFKECFPQGQTYCFYNANDKLNSD 958
Query: 822 WEVXXXXXXXXXXXEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLL 881
++ I F G +V +L + +V L Y N + T REK
Sbjct: 959 IDLRYLVDL------IQFSGNQVVFDLQDEIDYIV--ALDYSEAENE--KIITFREK--- 1005
Query: 882 WNKKLHVV 889
N+ + V+
Sbjct: 1006 -NRSMEVI 1012
Score = 49 (22.3 bits), Expect = 2.8e-73, Sum P(3) = 2.8e-73
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 885 KLHVVRSQWLEDCLAKE 901
K++V+ QW++DC+ K+
Sbjct: 842 KVNVLSLQWVKDCIKKK 858
Score = 37 (18.1 bits), Expect = 2.8e-73, Sum P(3) = 2.8e-73
Identities = 17/81 (20%), Positives = 34/81 (41%)
Query: 1037 MDDEENLETRQTNVVEDLESLDRGKALQQEVVKDFGKEKQTVRAPDIEMRERYHSKDSET 1096
+D++E L+ ++ ++ +E + +E VKD K + + Y ++
Sbjct: 894 VDEDELLDILKSMKIDQIEEEFQENEEFEEAVKDIISMKNQLFKECFPQGQTYCFYNAN- 952
Query: 1097 TDKQQVDAVQAMLLDMIPSLG 1117
DK D L+D+I G
Sbjct: 953 -DKLNSDIDLRYLVDLIQFSG 972
Score = 37 (18.1 bits), Expect = 3.4e-71, Sum P(2) = 3.4e-71
Identities = 7/27 (25%), Positives = 18/27 (66%)
Query: 886 LHVVRSQWLEDCLAKEQKSEEYEYSLK 912
L +++S ++ + Q++EE+E ++K
Sbjct: 900 LDILKSMKIDQIEEEFQENEEFEEAVK 926
>ASPGD|ASPL0000057134 [details] [associations]
symbol:AN0097 species:162425 "Emericella nidulans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006303 "double-strand
break repair via nonhomologous end joining" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0005694 EMBL:BN001308 GO:GO:0046872
GO:GO:0003677 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
EMBL:AACD01000003 GO:GO:0006303 GO:GO:0006289 GO:GO:0006273
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574
KO:K10777 OMA:HMCPSTK GO:GO:0032807 OrthoDB:EOG41K2MD
RefSeq:XP_657701.1 ProteinModelPortal:Q5BH83 STRING:Q5BH83
EnsemblFungi:CADANIAT00002653 GeneID:2875873 KEGG:ani:AN0097.2
HOGENOM:HOG000176213 Uniprot:Q5BH83
Length = 1009
Score = 776 (278.2 bits), Expect = 2.8e-82, Sum P(2) = 2.8e-82
Identities = 230/816 (28%), Positives = 401/816 (49%)
Query: 24 PAAKKRSKFRKFLDTYCDSV--DYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMS 81
P ++R +F+ + V D + A RLILP DR+R YG+KE ++ L++ + +
Sbjct: 76 PIERRRDIIERFISRWRKEVGDDIYPAFRLILPDKDRDRAMYGMKEKIIGKMLVNIMKID 135
Query: 82 KDSADAVRLINWRKGGAAPN---AGNFPMVAAEVLQRRQGMIS-GGLTIKELNDLLDRLA 137
K+S D L+NW+ G + AG+F +V+ +R G + I+E+N+ LD+L+
Sbjct: 136 KNSEDGFNLLNWKLPGQSATSSMAGDFAGRCYDVVSKRPMRTEFGNMLIEEVNEKLDQLS 195
Query: 138 SSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTC 197
S+ E++ +L+ ++ N +E+ W+I IIL+ +KLG +E++ F +HPDAE+L++++
Sbjct: 196 SASKEEEQLPILAEFYRRMNPEELAWLIRIILRQMKLGATERTFFDVWHPDAENLYSISS 255
Query: 198 DLKLVCEKLKDRNQRHKRQD--IEVGKAVRPQLA---MRIGDAHAA-WRKLHGKEVV-IE 250
L+ VC +L D N R +D + + + +PQLA M+ D A R V IE
Sbjct: 256 SLRRVCWELHDPNIRLDAEDRGVSLMQCFQPQLAQFQMQSLDRMIARMRPTEDDPVFWIE 315
Query: 251 CKFDGDRIQIHK-------NGSEIHYFSRSFLDHSE-YGH-------AMSKIIEQNVL-- 293
K DG+R+Q+H G ++SR D++ YG+ ++++ ++
Sbjct: 316 EKLDGERMQLHMVSDASAPGGRRFRFWSRKAKDYTYLYGNGIYDEAGSLTRHLKDAFADG 375
Query: 294 VDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAA-RDGLSSDRQVLCYFAFDVLYVGDTSV 352
VD ILDGEM+ W+T + FG+ + A + R+ L + FD+LY+ +
Sbjct: 376 VDNLILDGEMITWNTEQDAPEPFGTLKTAALSEQRNPFRQGIHPL-FRVFDILYLNGRDL 434
Query: 353 IHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKE 412
+L++R LQKV+KP R E H A EVE ++
Sbjct: 435 TRYTLRDRRNALQKVIKPVHRRFEV----HSYEE-------------ATTKAEVEASLRK 477
Query: 413 TIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLIIXXXXXXXXXXXEV 471
+ EG+VLK+ S + +R W+K+KPEY+ G LD+++I ++
Sbjct: 478 AVAEASEGLVLKNPRSPYRLNERHDDWMKVKPEYMTEFGESLDLVVIGGYYGSGHRGGKL 537
Query: 472 AQFLVALAE---RPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPP 528
+ FL L + + + P + SFC+VG G + + + + ++ PK+ P
Sbjct: 538 SSFLCGLRVDEGQSSQGSNPTKCYSFCKVGGGFTAADYANIRHHTDGKWVEWN-PKKPPT 596
Query: 529 SFYQVTNNSK--ERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDK 586
++ ++ ERPD+WI+ PE S+++ + + ++ S+ F +LRFPR R+R DK
Sbjct: 597 TYIELAGGDSQYERPDMWIK-PEDSVVICVKAASVSV-SDQFRIGLTLRFPRFKRLRMDK 654
Query: 587 PWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQT 646
W L VQ F++L S + KE+ +++ + K+ + K KK ++I +
Sbjct: 655 DWKSALSVQEFLDL-KSHAEQEHREKEFN-VENFRKKRVK---KTTKKPLAIA-GYDENA 708
Query: 647 DVSDIKGETSIFSDMVFYFV---NVPPAYSLDSLHKMVVENGGTFSMNLNNSV--THCVA 701
+V IF + F+ + N P S L +V NGG N++V T C+A
Sbjct: 709 EVQYAGPSGHIFDGLNFFILTDSNAPVKKSKAELENLVKANGGRI-FQTNDAVPDTICIA 767
Query: 702 ADNKGLKYEAAKRRGDV--IHYSWVLDCCSXXXXXXXXXXYYLHLSDSSK---KKLQEEV 756
D + +K + +++GD+ I SW+LDC L L K +EE+
Sbjct: 768 -DRRTVKAASLQKKGDIDIIRPSWILDCIKQSEIDAGLPDLLLPLEPGHMFFMTKDKEEI 826
Query: 757 -----DEFSDLYFWDLDLADIKQLLSNVDRSEDPKT 787
D+F+D Y D+ + +++ LL + ++D KT
Sbjct: 827 VAGSLDQFNDSYARDITVEELRNLLDQM--AKDGKT 860
Score = 68 (29.0 bits), Expect = 2.8e-82, Sum P(2) = 2.8e-82
Identities = 40/173 (23%), Positives = 70/173 (40%)
Query: 756 VDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCP------QDK----WS--C 803
+D+F+D Y D+ + +++ LL + ++D KT + + Q+K W+ C
Sbjct: 831 LDQFNDSYARDITVEELRNLLDQM--AKDGKTDSFCSPEAIQKVTEHIQEKVDSGWTMPC 888
Query: 804 ---FHGCCIYF-YHSTEPLSPDWEVXXXXXXXXXXXEISFHGGKVCNNLANA--THVVVL 857
F G + F + + S E F G V +L + THVVV
Sbjct: 889 GWLFKGLVLCFPENENDSASEGPEPKQSQRIHLAQNTAKFAGASVTTSLKDTSITHVVV- 947
Query: 858 SVLGYDVNFNSLTESFTAREKHLLWNKKL-HVVRSQWLEDCLAKEQKSEEYEY 909
D +F S + L +KL H+V+ W+ED + +E ++
Sbjct: 948 -----DPDFTS--SELPKLRRTLSTRRKLPHIVKVNWIEDSWKENTLLDEEQH 993
Score = 40 (19.1 bits), Expect = 2.5e-79, Sum P(2) = 2.5e-79
Identities = 4/17 (23%), Positives = 11/17 (64%)
Query: 886 LHVVRSQWLEDCLAKEQ 902
+ ++R W+ DC+ + +
Sbjct: 783 IDIIRPSWILDCIKQSE 799
>UNIPROTKB|Q5BH83 [details] [associations]
symbol:lig4 "DNA ligase 4" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0032807 "DNA ligase IV
complex" evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00697
PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0005694 EMBL:BN001308 GO:GO:0046872 GO:GO:0003677
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 EMBL:AACD01000003
GO:GO:0006303 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574 KO:K10777
OMA:HMCPSTK GO:GO:0032807 OrthoDB:EOG41K2MD RefSeq:XP_657701.1
ProteinModelPortal:Q5BH83 STRING:Q5BH83
EnsemblFungi:CADANIAT00002653 GeneID:2875873 KEGG:ani:AN0097.2
HOGENOM:HOG000176213 Uniprot:Q5BH83
Length = 1009
Score = 776 (278.2 bits), Expect = 2.8e-82, Sum P(2) = 2.8e-82
Identities = 230/816 (28%), Positives = 401/816 (49%)
Query: 24 PAAKKRSKFRKFLDTYCDSV--DYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMS 81
P ++R +F+ + V D + A RLILP DR+R YG+KE ++ L++ + +
Sbjct: 76 PIERRRDIIERFISRWRKEVGDDIYPAFRLILPDKDRDRAMYGMKEKIIGKMLVNIMKID 135
Query: 82 KDSADAVRLINWRKGGAAPN---AGNFPMVAAEVLQRRQGMIS-GGLTIKELNDLLDRLA 137
K+S D L+NW+ G + AG+F +V+ +R G + I+E+N+ LD+L+
Sbjct: 136 KNSEDGFNLLNWKLPGQSATSSMAGDFAGRCYDVVSKRPMRTEFGNMLIEEVNEKLDQLS 195
Query: 138 SSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTC 197
S+ E++ +L+ ++ N +E+ W+I IIL+ +KLG +E++ F +HPDAE+L++++
Sbjct: 196 SASKEEEQLPILAEFYRRMNPEELAWLIRIILRQMKLGATERTFFDVWHPDAENLYSISS 255
Query: 198 DLKLVCEKLKDRNQRHKRQD--IEVGKAVRPQLA---MRIGDAHAA-WRKLHGKEVV-IE 250
L+ VC +L D N R +D + + + +PQLA M+ D A R V IE
Sbjct: 256 SLRRVCWELHDPNIRLDAEDRGVSLMQCFQPQLAQFQMQSLDRMIARMRPTEDDPVFWIE 315
Query: 251 CKFDGDRIQIHK-------NGSEIHYFSRSFLDHSE-YGH-------AMSKIIEQNVL-- 293
K DG+R+Q+H G ++SR D++ YG+ ++++ ++
Sbjct: 316 EKLDGERMQLHMVSDASAPGGRRFRFWSRKAKDYTYLYGNGIYDEAGSLTRHLKDAFADG 375
Query: 294 VDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAA-RDGLSSDRQVLCYFAFDVLYVGDTSV 352
VD ILDGEM+ W+T + FG+ + A + R+ L + FD+LY+ +
Sbjct: 376 VDNLILDGEMITWNTEQDAPEPFGTLKTAALSEQRNPFRQGIHPL-FRVFDILYLNGRDL 434
Query: 353 IHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKE 412
+L++R LQKV+KP R E H A EVE ++
Sbjct: 435 TRYTLRDRRNALQKVIKPVHRRFEV----HSYEE-------------ATTKAEVEASLRK 477
Query: 413 TIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLIIXXXXXXXXXXXEV 471
+ EG+VLK+ S + +R W+K+KPEY+ G LD+++I ++
Sbjct: 478 AVAEASEGLVLKNPRSPYRLNERHDDWMKVKPEYMTEFGESLDLVVIGGYYGSGHRGGKL 537
Query: 472 AQFLVALAE---RPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPP 528
+ FL L + + + P + SFC+VG G + + + + ++ PK+ P
Sbjct: 538 SSFLCGLRVDEGQSSQGSNPTKCYSFCKVGGGFTAADYANIRHHTDGKWVEWN-PKKPPT 596
Query: 529 SFYQVTNNSK--ERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDK 586
++ ++ ERPD+WI+ PE S+++ + + ++ S+ F +LRFPR R+R DK
Sbjct: 597 TYIELAGGDSQYERPDMWIK-PEDSVVICVKAASVSV-SDQFRIGLTLRFPRFKRLRMDK 654
Query: 587 PWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQT 646
W L VQ F++L S + KE+ +++ + K+ + K KK ++I +
Sbjct: 655 DWKSALSVQEFLDL-KSHAEQEHREKEFN-VENFRKKRVK---KTTKKPLAIA-GYDENA 708
Query: 647 DVSDIKGETSIFSDMVFYFV---NVPPAYSLDSLHKMVVENGGTFSMNLNNSV--THCVA 701
+V IF + F+ + N P S L +V NGG N++V T C+A
Sbjct: 709 EVQYAGPSGHIFDGLNFFILTDSNAPVKKSKAELENLVKANGGRI-FQTNDAVPDTICIA 767
Query: 702 ADNKGLKYEAAKRRGDV--IHYSWVLDCCSXXXXXXXXXXYYLHLSDSSK---KKLQEEV 756
D + +K + +++GD+ I SW+LDC L L K +EE+
Sbjct: 768 -DRRTVKAASLQKKGDIDIIRPSWILDCIKQSEIDAGLPDLLLPLEPGHMFFMTKDKEEI 826
Query: 757 -----DEFSDLYFWDLDLADIKQLLSNVDRSEDPKT 787
D+F+D Y D+ + +++ LL + ++D KT
Sbjct: 827 VAGSLDQFNDSYARDITVEELRNLLDQM--AKDGKT 860
Score = 68 (29.0 bits), Expect = 2.8e-82, Sum P(2) = 2.8e-82
Identities = 40/173 (23%), Positives = 70/173 (40%)
Query: 756 VDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCP------QDK----WS--C 803
+D+F+D Y D+ + +++ LL + ++D KT + + Q+K W+ C
Sbjct: 831 LDQFNDSYARDITVEELRNLLDQM--AKDGKTDSFCSPEAIQKVTEHIQEKVDSGWTMPC 888
Query: 804 ---FHGCCIYF-YHSTEPLSPDWEVXXXXXXXXXXXEISFHGGKVCNNLANA--THVVVL 857
F G + F + + S E F G V +L + THVVV
Sbjct: 889 GWLFKGLVLCFPENENDSASEGPEPKQSQRIHLAQNTAKFAGASVTTSLKDTSITHVVV- 947
Query: 858 SVLGYDVNFNSLTESFTAREKHLLWNKKL-HVVRSQWLEDCLAKEQKSEEYEY 909
D +F S + L +KL H+V+ W+ED + +E ++
Sbjct: 948 -----DPDFTS--SELPKLRRTLSTRRKLPHIVKVNWIEDSWKENTLLDEEQH 993
Score = 40 (19.1 bits), Expect = 2.5e-79, Sum P(2) = 2.5e-79
Identities = 4/17 (23%), Positives = 11/17 (64%)
Query: 886 LHVVRSQWLEDCLAKEQ 902
+ ++R W+ DC+ + +
Sbjct: 783 IDIIRPSWILDCIKQSE 799
>UNIPROTKB|Q90YB1 [details] [associations]
symbol:LIG4 "DNA ligase 4" species:9031 "Gallus gallus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IBA;TAS] [GO:0032807 "DNA ligase IV complex" evidence=IBA]
[GO:0033151 "V(D)J recombination" evidence=IBA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006302 "double-strand break repair" evidence=TAS] [GO:0070419
"nonhomologous end joining complex" evidence=ISS]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0005694 GO:GO:0005654 GO:GO:0051301
GO:GO:0046872 GO:GO:0003677 GO:GO:0007049 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0006303 GO:GO:0006289 Reactome:REACT_115612
GO:GO:0006273 eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K10777
GO:GO:0032807 EMBL:AB058600 EMBL:AJ720061 IPI:IPI00651271
RefSeq:NP_001025987.1 UniGene:Gga.1352 ProteinModelPortal:Q90YB1
SMR:Q90YB1 STRING:Q90YB1 PRIDE:Q90YB1 GeneID:418764 KEGG:gga:418764
CTD:3981 HOGENOM:HOG000007831 HOVERGEN:HBG005516 InParanoid:Q90YB1
OrthoDB:EOG4Q58NP NextBio:20821908 GO:GO:0070419 GO:GO:0033151
Uniprot:Q90YB1
Length = 912
Score = 765 (274.4 bits), Expect = 4.6e-78, Sum P(2) = 4.6e-78
Identities = 196/543 (36%), Positives = 301/543 (55%)
Query: 12 LVSLFNWIQKTKPAAKKRSKFRKFLDTYC-----------DSVD-YFSALRLILPSLDRE 59
L S IQ K +K F+ FLD++ D D ++ A+RLILP L+RE
Sbjct: 24 LCSTLERIQTCKSRPEKTKYFKDFLDSWRKFHSALHQKEKDVTDSFYPAMRLILPQLERE 83
Query: 60 RGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKG-GAAPNAGNFPMVAAEVLQRRQG 118
R +YG+KE++LA I+ L + KD DAV+L+N+R G+ +AG+F M+A VL+ R
Sbjct: 84 RMAYGIKETMLAKLYIELLNLPKDGKDAVKLLNYRTPTGSRGDAGDFAMIAYFVLKPRSP 143
Query: 119 MISGGLTIKELNDLLDRLASSENRAEKISV---LSTLIKKTNAQEMKWIIMIILKDLKLG 175
G LT++++N+LLD +A++ K V L LI ++ A E KW+I +I+KDLKLG
Sbjct: 144 K-RGRLTVEQVNELLDAIANNNAAKNKGLVKKSLLQLITQSTALEQKWLIRMIIKDLKLG 202
Query: 176 ISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDA 235
+S+++IF FHPDA +L NVT DL+ VC +L D + I + A +P LA I D
Sbjct: 203 VSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSLSDVSIMLFSAFKPMLAA-IADV 261
Query: 236 HAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGHA-----MSKIIE 289
++++ + IE K DG+R+Q+HK+G YFSR+ D+++ +G + ++ I
Sbjct: 262 QQIEKQMNNQVFYIETKLDGERMQMHKDGDVYKYFSRNGFDYTQQFGASPVDGSLTPFIH 321
Query: 290 QNVL---VDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLY 346
NV + CILDGEM+ ++ F + G+ +I + D SD Q C+ FDVL
Sbjct: 322 -NVFKSDIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMVED---SDLQT-CFCVFDVLM 376
Query: 347 VGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEV 406
+ D + H+SL +R+++L V P GR+ + H ++ R EV
Sbjct: 377 INDQKLAHESLSKRYKILSNVFTPLTGRIHVV---HKKSARTRK--------------EV 419
Query: 407 EKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIXXXXXXX 465
E I+NR+EGI++KD S ++P R WLK+KPEY+ D LD+LI+
Sbjct: 420 IDALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKG 479
Query: 466 XXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKR 525
++ FL A+AE PAP+ P F S CRVG+G + +EL + KL +++ Y ++
Sbjct: 480 SRGGMMSHFLCAVAETPAPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYN--RK 537
Query: 526 APP 528
PP
Sbjct: 538 DPP 540
Score = 496 (179.7 bits), Expect = 5.7e-44, P = 5.7e-44
Identities = 143/512 (27%), Positives = 242/512 (47%)
Query: 405 EVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIXXXXX 463
EV E I+NR+EGI++KD S ++P R WLK+KPEY+ D LD+LI+
Sbjct: 418 EVIDALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWG 477
Query: 464 XXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYP 523
++ FL A+AE PAP+ P F S CRVG+G + +EL + KL +++ Y
Sbjct: 478 KGSRGGMMSHFLCAVAETPAPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYN-- 535
Query: 524 KRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVR 583
++ PP + + E+P+++IE P S+I+ I + + S+++ +LRFPRI+++R
Sbjct: 536 RKDPPC--NILCGT-EKPEMYIE-PCNSVIVQIKA-AEIVNSDMYKTDCTLRFPRIEKIR 590
Query: 584 YDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHF 643
DK W++C+ + L + G Y D+ ++ R + KK + I F
Sbjct: 591 EDKEWYECMTLDMLEHLRSRAEGKLASKHLYIDEYDEPQEKKRRTVPKVKKVIGIA-EQF 649
Query: 644 LQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCV--A 701
D+S++ +S+F D+ F + YS L + E GG+ N T+CV
Sbjct: 650 KAPDLSNVNKVSSMFEDVEFCVMTGMGRYSKSELESRIAECGGSVVQNPGPD-TYCVIVG 708
Query: 702 ADNKGLKYEAAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEEVDEFSD 761
A+N +K A + DV+ W+L C + +H+S +++ E D + D
Sbjct: 709 AENVRVKNIIASNKYDVVKAEWLLQCFQSKMLVPWQPAFMIHMSPETREHFAREYDCYGD 768
Query: 762 LYFWDLDLADIKQLLSNV-DRSEDP-KTIDYYKKKYCPQDKWSC-FHGCCIYFYHSTEPL 818
Y D D+A +K++ S V D + P I +++Y C F G IY +
Sbjct: 769 SYTADTDVAQLKEVFSRVKDNKKMPLDLIAELEERYSWNSCKLCIFRGNTIYVDYYAIIN 828
Query: 819 SPDWEVXXXXXXXXXXXEISFHGGKVCNNLANA-THVVVLSVLGYDVNFNSLTESFTARE 877
P ++ E+ F+G KV L +HVV+ G D +S + A
Sbjct: 829 KPSTKIHGTRLSIRAL-ELRFYGAKVVPLLEEGVSHVVI----GED---HSRVKEMKALR 880
Query: 878 KHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEY 909
+ ++ KK +V W+ + + + E ++
Sbjct: 881 R--MFGKKFKIVSELWVTESVKEGVPKNETQF 910
Score = 39 (18.8 bits), Expect = 4.6e-78, Sum P(2) = 4.6e-78
Identities = 16/77 (20%), Positives = 33/77 (42%)
Query: 1038 DDEENLETRQTNVVEDLESLDRGKALQQEVVKDFGKEKQTVRAPDIEMRERYH--SKDSE 1095
+D+E E +++E L S GK + + D E Q + + ++ ++ +
Sbjct: 591 EDKEWYECMTLDMLEHLRSRAEGKLASKHLYIDEYDEPQEKKRRTVPKVKKVIGIAEQFK 650
Query: 1096 TTDKQQVDAVQAMLLDM 1112
D V+ V +M D+
Sbjct: 651 APDLSNVNKVSSMFEDV 667
>UNIPROTKB|F1P275 [details] [associations]
symbol:LIG4 "DNA ligase" species:9031 "Gallus gallus"
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0050769 "positive regulation of
neurogenesis" evidence=IEA] [GO:0051102 "DNA ligation involved in
DNA recombination" evidence=IEA] [GO:0051103 "DNA ligation involved
in DNA repair" evidence=IEA] [GO:0051276 "chromosome organization"
evidence=IEA] [GO:0051402 "neuron apoptotic process" evidence=IEA]
[GO:0000012 "single strand break repair" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0002328 "pro-B cell
differentiation" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0005925 "focal adhesion" evidence=IEA]
[GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=IEA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IEA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA] [GO:0007417 "central
nervous system development" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032807
"DNA ligase IV complex" evidence=IEA] [GO:0033077 "T cell
differentiation in thymus" evidence=IEA] [GO:0033152
"immunoglobulin V(D)J recombination" evidence=IEA] [GO:0033153 "T
cell receptor V(D)J recombination" evidence=IEA] [GO:0035019
"somatic stem cell maintenance" evidence=IEA] [GO:0043524 "negative
regulation of neuron apoptotic process" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0048146 "positive regulation
of fibroblast proliferation" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333 PROSITE:PS00697
PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005886
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 GO:GO:0008283
GO:GO:0006260 GO:GO:0051402 GO:GO:0043524 GO:GO:0005925
GO:GO:0010332 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0000793 GO:GO:0048146 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0010165 GO:GO:0051276 GO:GO:0000012
GO:GO:0005958 GO:GO:0006303 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
GO:GO:0006297 OMA:HMCPSTK GO:GO:0032807 IPI:IPI00651271
GO:GO:0051102 GeneTree:ENSGT00700000104500 EMBL:AADN02029083
Ensembl:ENSGALT00000027230 Uniprot:F1P275
Length = 912
Score = 764 (274.0 bits), Expect = 5.9e-78, Sum P(2) = 5.9e-78
Identities = 196/543 (36%), Positives = 300/543 (55%)
Query: 12 LVSLFNWIQKTKPAAKKRSKFRKFLDTYC-----------DSVD-YFSALRLILPSLDRE 59
L S IQ K +K F+ FLD++ D D ++ A+RLILP L+RE
Sbjct: 24 LCSTLERIQTCKSRPEKTKYFKDFLDSWRKFHSALHQKEKDVTDSFYPAMRLILPQLERE 83
Query: 60 RGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKG-GAAPNAGNFPMVAAEVLQRRQG 118
R +YG+KE++LA I+ L + KD DAV+L+N+R G+ +AG+F M+A VL+ R
Sbjct: 84 RMAYGIKETMLAKLYIELLNLPKDGKDAVKLLNYRTPTGSRGDAGDFAMIAYFVLKPRSP 143
Query: 119 MISGGLTIKELNDLLDRLASSENRAEKISV---LSTLIKKTNAQEMKWIIMIILKDLKLG 175
G LT++++N+LLD +A++ K V L LI ++ A E KW+I +I+KDLKLG
Sbjct: 144 K-RGRLTVEQVNELLDAIANNNAAKNKGLVKKSLLQLITQSTALEQKWLIRMIIKDLKLG 202
Query: 176 ISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDA 235
+S+++IF FHPDA +L NVT DL+ VC +L D + I + A +P LA I D
Sbjct: 203 VSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSLSDVSIMLFSAFKPMLAA-IADV 261
Query: 236 HAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGHA-----MSKIIE 289
++++ + IE K DG+R+Q+HK+G YFSR+ D+++ +G + ++ I
Sbjct: 262 QQIEKQMNNQVFYIETKLDGERMQMHKDGDVYKYFSRNGFDYTQQFGASPVDGSLTPFIH 321
Query: 290 QNVL---VDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLY 346
NV + CILDGEM+ ++ F + G+ +I + D SD Q C+ FDVL
Sbjct: 322 -NVFKSDIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMVED---SDLQT-CFCVFDVLM 376
Query: 347 VGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEV 406
+ D + H+SL R+++L V P GR+ + H ++ R EV
Sbjct: 377 INDQKLAHESLSTRYKILSNVFTPLTGRIHVV---HKKSARTRK--------------EV 419
Query: 407 EKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIXXXXXXX 465
E I+NR+EGI++KD S ++P R WLK+KPEY+ D LD+LI+
Sbjct: 420 IDALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKG 479
Query: 466 XXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKR 525
++ FL A+AE PAP+ P F S CRVG+G + +EL + KL +++ Y ++
Sbjct: 480 SRGGMMSHFLCAIAETPAPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYN--RK 537
Query: 526 APP 528
PP
Sbjct: 538 DPP 540
Score = 497 (180.0 bits), Expect = 4.4e-44, P = 4.4e-44
Identities = 143/512 (27%), Positives = 242/512 (47%)
Query: 405 EVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIXXXXX 463
EV E I+NR+EGI++KD S ++P R WLK+KPEY+ D LD+LI+
Sbjct: 418 EVIDALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWG 477
Query: 464 XXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYP 523
++ FL A+AE PAP+ P F S CRVG+G + +EL + KL +++ Y
Sbjct: 478 KGSRGGMMSHFLCAIAETPAPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYN-- 535
Query: 524 KRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVR 583
++ PP + + E+P+++IE P S+I+ I + + S+++ +LRFPRI+++R
Sbjct: 536 RKDPPC--NILCGT-EKPEMYIE-PCNSVIVQIKA-AEIVNSDMYKTDCTLRFPRIEKIR 590
Query: 584 YDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHF 643
DK W++C+ + L + G Y D+ ++ R + KK + I F
Sbjct: 591 EDKEWYECMTLDMLEHLRSRAEGKLASKHLYIDEYDEPQEKKRRTVPKVKKVIGIA-EQF 649
Query: 644 LQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCV--A 701
D+S++ +S+F D+ F + YS L + E GG+ N T+CV
Sbjct: 650 KAPDLSNVNKVSSMFEDVEFCVMTGMGRYSKSELESRIAECGGSVVQNPGPD-TYCVIVG 708
Query: 702 ADNKGLKYEAAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEEVDEFSD 761
A+N +K A + DV+ W+L C + +H+S +++ E D + D
Sbjct: 709 AENVRVKNIIASNKYDVVKAEWLLQCFQSKMLVPWQPAFMIHMSPETREHFAREYDCYGD 768
Query: 762 LYFWDLDLADIKQLLSNV-DRSEDP-KTIDYYKKKYCPQDKWSC-FHGCCIYFYHSTEPL 818
Y D D+A +K++ S V D + P I +++Y C F G IY +
Sbjct: 769 SYTADTDVAQLKEVFSRVKDNKKMPLDLIAELEERYSWNSCKLCIFRGNTIYVDYYAIIN 828
Query: 819 SPDWEVXXXXXXXXXXXEISFHGGKVCNNLANA-THVVVLSVLGYDVNFNSLTESFTARE 877
P ++ E+ F+G KV L +HVV+ G D +S + A
Sbjct: 829 KPSTKIHGTRLSIRAL-ELRFYGAKVVPLLEEGVSHVVI----GED---HSRVKEMKALR 880
Query: 878 KHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEY 909
+ ++ KK +V W+ + + + E ++
Sbjct: 881 R--MFGKKFKIVSELWVTESVKEGVPKNETQF 910
Score = 39 (18.8 bits), Expect = 5.9e-78, Sum P(2) = 5.9e-78
Identities = 16/77 (20%), Positives = 33/77 (42%)
Query: 1038 DDEENLETRQTNVVEDLESLDRGKALQQEVVKDFGKEKQTVRAPDIEMRERYH--SKDSE 1095
+D+E E +++E L S GK + + D E Q + + ++ ++ +
Sbjct: 591 EDKEWYECMTLDMLEHLRSRAEGKLASKHLYIDEYDEPQEKKRRTVPKVKKVIGIAEQFK 650
Query: 1096 TTDKQQVDAVQAMLLDM 1112
D V+ V +M D+
Sbjct: 651 APDLSNVNKVSSMFEDV 667
>UNIPROTKB|Q5R6L3 [details] [associations]
symbol:DNL4 "DNA ligase 4" species:9601 "Pongo abelii"
[GO:0070419 "nonhomologous end joining complex" evidence=ISS]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0005634 GO:GO:0051301 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0007049 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K10777
CTD:3981 HOVERGEN:HBG005516 GO:GO:0070419 EMBL:CR860475
RefSeq:NP_001126522.1 UniGene:Pab.18738 ProteinModelPortal:Q5R6L3
SMR:Q5R6L3 PRIDE:Q5R6L3 GeneID:100173511 KEGG:pon:100173511
InParanoid:Q5R6L3 Uniprot:Q5R6L3
Length = 911
Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
Identities = 205/570 (35%), Positives = 318/570 (55%)
Query: 12 LVSLFNWIQKTKPAAKKRSKFRKFLDTYC-----------DSVD-YFSALRLILPSLDRE 59
L S IQK+K A+K FR+FLD++ D D ++ A+RLILP L+RE
Sbjct: 19 LCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDAFHKNQKDVTDSFYPAMRLILPQLERE 78
Query: 60 RGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKG-GAAPNAGNFPMVAAEVLQRRQG 118
R +YG+KE++LA I+ L + +D DA++L+N+R G +AG+F M+A VL+ R
Sbjct: 79 RMAYGIKETMLAKLYIELLNLPRDGKDALKLLNYRTPTGTHGDAGDFAMIAYFVLKPRC- 137
Query: 119 MISGGLTIKELNDLLDRLASSENRAEKISV---LSTLIKKTNAQEMKWIIMIILKDLKLG 175
+ G LTI+++NDLLD +AS+ + K + L LI +++A E KW+I +I+KDLKLG
Sbjct: 138 LQKGSLTIQQVNDLLDSIASNNSAKRKDLIKKSLLQLITQSSALEQKWLIRMIIKDLKLG 197
Query: 176 ISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDA 235
+S+++IF FH DA +L NVT DL+ VC +L D + I + A +P LA I D
Sbjct: 198 VSQQTIFSVFHSDAVELHNVTTDLEKVCRQLHDPSVGLSDISITLFSAFKPMLAA-IADI 256
Query: 236 HAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGHA-----MSKIIE 289
+ + + IE K DG+R+Q+HK+G YFSR+ ++++ +G + ++ I
Sbjct: 257 EHIEKDMKHQSFYIETKLDGERMQMHKDGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIH 316
Query: 290 QNVLVDR--CILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYV 347
D CILDGEM+ ++ + F + G+ +I + D SD Q CY FDVL V
Sbjct: 317 NAFKTDIQICILDGEMMAYNPNTQTFMQKGTKFDIKRMVED---SDLQT-CYCVFDVLMV 372
Query: 348 GDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVE 407
+ + H++L++R+E+L + P GR+E + + Q AH +EV
Sbjct: 373 NNKKLGHETLRKRYEILSSIFTPIPGRIEIVQ---------KTQ--------AHTKNEVI 415
Query: 408 KFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIXXXXXXXX 466
E I+ R+EGI++K S ++P R WLK+KPEY+ D LD+LI+
Sbjct: 416 DALNEAIDKREEGIMIKQPLSIYKPDKRGEGWLKIKPEYVSGLMDELDILIVGGYWGKGS 475
Query: 467 XXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRA 526
++ FL A+AE+P P P F + RVG+G + +EL + KL Y++ + K+A
Sbjct: 476 RGGMMSHFLCAVAEKPPPGEKPSVFHTLSRVGSGCTMKELYDLGLKLAKYWKPFH--KKA 533
Query: 527 PPSFYQVTNNSKERPDVWIESPEKSIILSI 556
PPS E+P+V+IE P S+I+ I
Sbjct: 534 PPSSILC---GTEKPEVYIE-PCNSVIVQI 559
Score = 520 (188.1 bits), Expect = 4.8e-46, Sum P(2) = 4.8e-46
Identities = 145/523 (27%), Positives = 248/523 (47%)
Query: 400 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLII 458
AH +EV E I+ R+EGI++K S ++P R WLK+KPEY+ D LD+LI+
Sbjct: 408 AHTKNEVIDALNEAIDKREEGIMIKQPLSIYKPDKRGEGWLKIKPEYVSGLMDELDILIV 467
Query: 459 XXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFR 518
++ FL A+AE+P P P F + RVG+G + +EL + KL Y++
Sbjct: 468 GGYWGKGSRGGMMSHFLCAVAEKPPPGEKPSVFHTLSRVGSGCTMKELYDLGLKLAKYWK 527
Query: 519 KYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPR 578
+ K+APPS E+P+V+IE P S+I+ I + + S+++ +LRFPR
Sbjct: 528 PFH--KKAPPSSILC---GTEKPEVYIE-PCNSVIVQIKA-AEIVPSDMYKTGCTLRFPR 580
Query: 579 IDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSI 638
I+++R DK WH+C+ + +L ++G Y G D+ ++ R + KK + I
Sbjct: 581 IEKIRDDKEWHECMTLDDLEQLRGKASGKLASKHFYVGGDDEPQEKKRKAAPKMKKVIGI 640
Query: 639 VPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTH 698
+ H +++++ ++IF D+ F ++ + L + E GG N T+
Sbjct: 641 I-EHLKAPNLTNVNKISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGPD-TY 698
Query: 699 CVAADNKGLKYE--AAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEEV 756
CV A +K ++ + + DV+ +W+L+C + +H+ S+K+ E
Sbjct: 699 CVIAGSKNIRVKNIILSNKHDVVKPAWLLECFKTKSFVPWQPHFMIHMCPSTKEHFAREY 758
Query: 757 DEFSDLYFWDLDLADIKQLLSNVDRSED--PKTIDYYKKKYCPQDKWSC-----FHGCCI 809
D + D YF D DL +K++ S + S + P+ + + W C F +
Sbjct: 759 DCYGDSYFVDTDLNQLKEVFSGIKNSNEQTPEEMASLIADLEYRYSWDCSPLSMFRRHTV 818
Query: 810 YF--YHSTEPLSPDWEVXXXXXXXXXXXEISFHGGKVCNNLANA-THVVVLSVLGYDVNF 866
Y Y LS E E+ FHG KV + LA +HV++ G D
Sbjct: 819 YLDLYAVINDLSTKNE---GTRLAIKALELRFHGAKVVSCLAEGVSHVII----GED--- 868
Query: 867 NSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEY 909
+S F A + + +K +++ W+ D + K + EE +Y
Sbjct: 869 HSRIADFKAFRR--TFKRKFKILKESWITDSIDKCELQEENQY 909
Score = 43 (20.2 bits), Expect = 4.8e-46, Sum P(2) = 4.8e-46
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 120 ISGGLTIKELNDLLDRLASSENRAEKI 146
++ + +L L+R+ S+ RAEKI
Sbjct: 10 VASHVPFADLCSTLERIQKSKGRAEKI 36
>UNIPROTKB|P49917 [details] [associations]
symbol:LIG4 "DNA ligase 4" species:9606 "Homo sapiens"
[GO:0007049 "cell cycle" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0033152 "immunoglobulin
V(D)J recombination" evidence=IEA] [GO:0071285 "cellular response
to lithium ion" evidence=IEA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0016874 "ligase
activity" evidence=IDA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IDA] [GO:0000012 "single strand break
repair" evidence=IDA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IDA] [GO:0006266 "DNA ligation" evidence=IDA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP;IDA;TAS] [GO:0033151 "V(D)J recombination"
evidence=IDA] [GO:0032807 "DNA ligase IV complex" evidence=IMP]
[GO:0002328 "pro-B cell differentiation" evidence=ISS] [GO:0005958
"DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=ISS;IDA] [GO:0006302 "double-strand break repair"
evidence=ISS;IDA;TAS] [GO:0007417 "central nervous system
development" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0010332 "response to gamma radiation"
evidence=ISS] [GO:0033153 "T cell receptor V(D)J recombination"
evidence=ISS] [GO:0035019 "somatic stem cell maintenance"
evidence=ISS] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=ISS] [GO:0045190 "isotype switching"
evidence=ISS] [GO:0050769 "positive regulation of neurogenesis"
evidence=ISS] [GO:0051102 "DNA ligation involved in DNA
recombination" evidence=ISS] [GO:0051103 "DNA ligation involved in
DNA repair" evidence=ISS;IDA] [GO:0051276 "chromosome organization"
evidence=ISS] [GO:0001701 "in utero embryonic development"
evidence=ISS] [GO:0033077 "T cell differentiation in thymus"
evidence=ISS] [GO:0048146 "positive regulation of fibroblast
proliferation" evidence=ISS] [GO:0051402 "neuron apoptotic process"
evidence=ISS] [GO:0000793 "condensed chromosome" evidence=IDA]
[GO:0003909 "DNA ligase activity" evidence=IDA;TAS] [GO:0008022
"protein C-terminus binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0010165 "response to X-ray" evidence=IMP]
[GO:0070419 "nonhomologous end joining complex" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0016032 "viral reproduction" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0005925 "focal adhesion" evidence=IDA] Reactome:REACT_216
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005886 GO:GO:0005524 GO:GO:0005737 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0016032 GO:GO:0051301 GO:GO:0046872
GO:GO:0003677 GO:GO:0008283 GO:GO:0001701 GO:GO:0051402
GO:GO:0007417 GO:GO:0043524 GO:GO:0005925 GO:GO:0010332
EMBL:AL157762 GO:GO:0007049 GO:GO:0050769 GO:GO:0033077
GO:GO:0035019 GO:GO:0045190 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0000793 GO:GO:0048146 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0010165 GO:GO:0051276
GO:GO:0000012 GO:GO:0005958 GO:GO:0006303 GO:GO:0033153
GO:GO:0071285 PDB:4HTP PDBsum:4HTP MIM:602450 Orphanet:39041
GO:GO:0006273 eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
GO:GO:0006297 BRENDA:6.5.1.1 KO:K10777 OMA:HMCPSTK GO:GO:0032807
CTD:3981 HOGENOM:HOG000007831 HOVERGEN:HBG005516 OrthoDB:EOG4Q58NP
EMBL:X83441 EMBL:AF479264 EMBL:BC037491 IPI:IPI00217669 PIR:I37079
RefSeq:NP_001091738.1 RefSeq:NP_002303.2 RefSeq:NP_996820.1
UniGene:Hs.166091 PDB:1IK9 PDB:2E2W PDB:3II6 PDB:3VNN PDB:4HTO
PDBsum:1IK9 PDBsum:2E2W PDBsum:3II6 PDBsum:3VNN PDBsum:4HTO
ProteinModelPortal:P49917 SMR:P49917 DIP:DIP-37958N IntAct:P49917
MINT:MINT-3018022 STRING:P49917 PhosphoSite:P49917 DMDM:88911290
PaxDb:P49917 PRIDE:P49917 DNASU:3981 Ensembl:ENST00000356922
Ensembl:ENST00000405925 Ensembl:ENST00000442234 GeneID:3981
KEGG:hsa:3981 UCSC:uc001vqn.3 GeneCards:GC13M108859 HGNC:HGNC:6601
HPA:HPA001334 MIM:601837 MIM:606593 neXtProt:NX_P49917
Orphanet:99812 PharmGKB:PA30375 InParanoid:P49917 PhylomeDB:P49917
ChiTaRS:LIG4 EvolutionaryTrace:P49917 GenomeRNAi:3981 NextBio:15604
Bgee:P49917 CleanEx:HS_LIG4 Genevestigator:P49917
GermOnline:ENSG00000174405 GO:GO:0051102 GO:GO:0033152
GO:GO:0002328 Uniprot:P49917
Length = 911
Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
Identities = 204/570 (35%), Positives = 318/570 (55%)
Query: 12 LVSLFNWIQKTKPAAKKRSKFRKFLDTYC-----------DSVD-YFSALRLILPSLDRE 59
L S IQK+K A+K FR+FLD++ D D ++ A+RLILP L+RE
Sbjct: 19 LCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDALHKNHKDVTDSFYPAMRLILPQLERE 78
Query: 60 RGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKG-GAAPNAGNFPMVAAEVLQRRQG 118
R +YG+KE++LA I+ L + +D DA++L+N+R G +AG+F M+A VL+ R
Sbjct: 79 RMAYGIKETMLAKLYIELLNLPRDGKDALKLLNYRTPTGTHGDAGDFAMIAYFVLKPRC- 137
Query: 119 MISGGLTIKELNDLLDRLASSENRAEKISV---LSTLIKKTNAQEMKWIIMIILKDLKLG 175
+ G LTI+++NDLLD +AS+ + K + L LI +++A E KW+I +I+KDLKLG
Sbjct: 138 LQKGSLTIQQVNDLLDSIASNNSAKRKDLIKKSLLQLITQSSALEQKWLIRMIIKDLKLG 197
Query: 176 ISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDA 235
+S+++IF FH DA +L NVT DL+ VC +L D + I + A +P LA I D
Sbjct: 198 VSQQTIFSVFHNDAAELHNVTTDLEKVCRQLHDPSVGLSDISITLFSAFKPMLAA-IADI 256
Query: 236 HAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGHA-----MSKIIE 289
+ + + IE K DG+R+Q+HK+G YFSR+ ++++ +G + ++ I
Sbjct: 257 EHIEKDMKHQSFYIETKLDGERMQMHKDGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIH 316
Query: 290 QNVLVDR--CILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYV 347
D CILDGEM+ ++ + F + G+ +I + D SD Q CY FDVL V
Sbjct: 317 NAFKADIQICILDGEMMAYNPNTQTFMQKGTKFDIKRMVED---SDLQT-CYCVFDVLMV 372
Query: 348 GDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVE 407
+ + H++L++R+E+L + P GR+E + + Q AH +EV
Sbjct: 373 NNKKLGHETLRKRYEILSSIFTPIPGRIEIVQ---------KTQ--------AHTKNEVI 415
Query: 408 KFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIXXXXXXXX 466
E I+ R+EGI++K S ++P R WLK+KPEY+ D LD+LI+
Sbjct: 416 DALNEAIDKREEGIMVKQPLSIYKPDKRGEGWLKIKPEYVSGLMDELDILIVGGYWGKGS 475
Query: 467 XXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRA 526
++ FL A+AE+P P P F + RVG+G + +EL + KL Y++ + ++A
Sbjct: 476 RGGMMSHFLCAVAEKPPPGEKPSVFHTLSRVGSGCTMKELYDLGLKLAKYWKPFH--RKA 533
Query: 527 PPSFYQVTNNSKERPDVWIESPEKSIILSI 556
PPS E+P+V+IE P S+I+ I
Sbjct: 534 PPSSILC---GTEKPEVYIE-PCNSVIVQI 559
Score = 512 (185.3 bits), Expect = 3.9e-45, Sum P(2) = 3.9e-45
Identities = 144/524 (27%), Positives = 249/524 (47%)
Query: 400 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLII 458
AH +EV E I+ R+EGI++K S ++P R WLK+KPEY+ D LD+LI+
Sbjct: 408 AHTKNEVIDALNEAIDKREEGIMVKQPLSIYKPDKRGEGWLKIKPEYVSGLMDELDILIV 467
Query: 459 XXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFR 518
++ FL A+AE+P P P F + RVG+G + +EL + KL Y++
Sbjct: 468 GGYWGKGSRGGMMSHFLCAVAEKPPPGEKPSVFHTLSRVGSGCTMKELYDLGLKLAKYWK 527
Query: 519 KYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPR 578
+ ++APPS E+P+V+IE P S+I+ I + + S+++ +LRFPR
Sbjct: 528 PFH--RKAPPSSILC---GTEKPEVYIE-PCNSVIVQIKA-AEIVPSDMYKTGCTLRFPR 580
Query: 579 IDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEY-GGLQDDKPKQFRSSRKGEKKNVS 637
I+++R DK WH+C+ + +L ++G Y GG DD+P++ + + K V
Sbjct: 581 IEKIRDDKEWHECMTLDDLEQLRGKASGKLASKHLYIGG--DDEPQEKKRKAAPKMKKVI 638
Query: 638 IVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVT 697
+ H +++++ ++IF D+ F ++ + L + E GG N T
Sbjct: 639 GIIEHLKAPNLTNVNKISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGPD-T 697
Query: 698 HCVAADNKGLKYE--AAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEE 755
+CV A ++ ++ + + DV+ +W+L+C + +H+ S+K+ E
Sbjct: 698 YCVIAGSENIRVKNIILSNKHDVVKPAWLLECFKTKSFVPWQPRFMIHMCPSTKEHFARE 757
Query: 756 VDEFSDLYFWDLDLADIKQLLSNVDRSED--PKTIDYYKKKYCPQDKWSC-----FHGCC 808
D + D YF D DL +K++ S + S + P+ + + W C F
Sbjct: 758 YDCYGDSYFIDTDLNQLKEVFSGIKNSNEQTPEEMASLIADLEYRYSWDCSPLSMFRRHT 817
Query: 809 IYF--YHSTEPLSPDWEVXXXXXXXXXXXEISFHGGKVCNNLANA-THVVVLSVLGYDVN 865
+Y Y LS E E+ FHG KV + LA +HV++ G D
Sbjct: 818 VYLDSYAVINDLSTKNE---GTRLAIKALELRFHGAKVVSCLAEGVSHVII----GED-- 868
Query: 866 FNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEY 909
+S F A + + +K +++ W+ D + K + EE +Y
Sbjct: 869 -HSRVADFKAFRR--TFKRKFKILKESWVTDSIDKCELQEENQY 909
Score = 43 (20.2 bits), Expect = 3.9e-45, Sum P(2) = 3.9e-45
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 120 ISGGLTIKELNDLLDRLASSENRAEKI 146
++ + +L L+R+ S+ RAEKI
Sbjct: 10 VASHVPFADLCSTLERIQKSKGRAEKI 36
>UNIPROTKB|F1RLP1 [details] [associations]
symbol:LIG4 "DNA ligase" species:9823 "Sus scrofa"
[GO:0051402 "neuron apoptotic process" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0051102 "DNA ligation
involved in DNA recombination" evidence=IEA] [GO:0050769 "positive
regulation of neurogenesis" evidence=IEA] [GO:0048146 "positive
regulation of fibroblast proliferation" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0043524 "negative regulation
of neuron apoptotic process" evidence=IEA] [GO:0035019 "somatic
stem cell maintenance" evidence=IEA] [GO:0033153 "T cell receptor
V(D)J recombination" evidence=IEA] [GO:0033152 "immunoglobulin
V(D)J recombination" evidence=IEA] [GO:0033077 "T cell
differentiation in thymus" evidence=IEA] [GO:0032807 "DNA ligase IV
complex" evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0008283 "cell proliferation" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA] [GO:0007417 "central nervous
system development" evidence=IEA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=IEA] [GO:0005925 "focal adhesion" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0002328 "pro-B cell
differentiation" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333 PROSITE:PS00697
PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005886
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 GO:GO:0008283
GO:GO:0006260 GO:GO:0001701 GO:GO:0051402 GO:GO:0007417
GO:GO:0043524 GO:GO:0005925 GO:GO:0010332 GO:GO:0050769
GO:GO:0033077 GO:GO:0035019 GO:GO:0045190 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000793 GO:GO:0048146
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0010165
GO:GO:0051276 GO:GO:0000012 GO:GO:0005958 GO:GO:0006303
GO:GO:0033153 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GO:GO:0006297 KO:K10777
OMA:HMCPSTK GO:GO:0032807 GO:GO:0051102 GO:GO:0033152 GO:GO:0002328
GeneTree:ENSGT00700000104500 EMBL:CU019584 RefSeq:XP_003131137.2
ProteinModelPortal:F1RLP1 Ensembl:ENSSSCT00000010458
GeneID:100155891 KEGG:ssc:100155891 Uniprot:F1RLP1
Length = 910
Score = 758 (271.9 bits), Expect = 3.7e-75, P = 3.7e-75
Identities = 202/570 (35%), Positives = 313/570 (54%)
Query: 12 LVSLFNWIQKTKPAAKKRSKFRKFLDTYC-----------DSVD-YFSALRLILPSLDRE 59
L S IQ+++ +K F++FLD++ D D ++ A+RLILP L+RE
Sbjct: 19 LCSTLERIQRSRGRGEKMRHFKEFLDSWRKFHDALHKNHRDVTDSFYPAMRLILPQLERE 78
Query: 60 RGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKG-GAAPNAGNFPMVAAEVLQRRQG 118
R +YG+KE++LA I+ L + +D DA++L+N+R G +AG+F ++A VL+ R
Sbjct: 79 RMAYGIKETMLAKLYIELLNLPRDGKDALKLLNYRTPTGTRGDAGDFAIIAYFVLKPRC- 137
Query: 119 MISGGLTIKELNDLLDRLASSENRAEKISV---LSTLIKKTNAQEMKWIIMIILKDLKLG 175
+ G LTI+++NDLLD +AS+ + K V L LI +++A E KW+I +ILKDLKLG
Sbjct: 138 LQKGSLTIQQVNDLLDSIASNNSAKRKDLVKKSLLQLITQSSALEQKWLIRMILKDLKLG 197
Query: 176 ISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDA 235
S+++IF FH DA +L NVT DL+ VC +L D + I + A +P LA I D
Sbjct: 198 FSQQTIFSLFHDDAAELHNVTTDLEKVCRQLHDPSVGLSDISITLFSAFKPMLAA-IADI 256
Query: 236 HAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YG-----HAMSKIIE 289
+ + + IE K DG+R+Q+HK+G YFSR+ ++ + +G +++ I
Sbjct: 257 ERIEKDMKHQSFYIETKLDGERMQMHKDGDVYQYFSRNGYNYGDQFGVSPQEGSLTPFIH 316
Query: 290 QNVL--VDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYV 347
V CILDGEM+ ++ + F + G+ +I + D SD Q CY FDVL V
Sbjct: 317 GTFKTNVQNCILDGEMMAYNPNTQTFMQKGNKFDIKRMVED---SDLQT-CYCVFDVLMV 372
Query: 348 GDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVE 407
+ H++LK R+E+L V P GR+E +VP + Q AH EV
Sbjct: 373 NSKKLGHETLKNRYEILSSVFTPIPGRIE-IVP--------KTQ--------AHTKKEVI 415
Query: 408 KFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIXXXXXXXX 466
E I+ R+EGI++K S ++P R WLK+KPEY+ D LD+LI+
Sbjct: 416 DALNEAIDKREEGIMIKYPLSIYKPDKRGEGWLKIKPEYVNGLMDELDILIVGGYWGKGA 475
Query: 467 XXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRA 526
++ FL A+AE+P P F + CRVG+G + +EL + KL +++ + ++A
Sbjct: 476 RGGMMSHFLCAVAEKPPAGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHWKPFH--RKA 533
Query: 527 PPSFYQVTNNSKERPDVWIESPEKSIILSI 556
PP E+P+V+IE P S+I+ +
Sbjct: 534 PPGSILC---GTEKPEVYIE-PCNSVIVQV 559
Score = 458 (166.3 bits), Expect = 8.3e-40, P = 8.3e-40
Identities = 134/521 (25%), Positives = 243/521 (46%)
Query: 400 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLII 458
AH EV E I+ R+EGI++K S ++P R WLK+KPEY+ D LD+LI+
Sbjct: 408 AHTKKEVIDALNEAIDKREEGIMIKYPLSIYKPDKRGEGWLKIKPEYVNGLMDELDILIV 467
Query: 459 XXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFR 518
++ FL A+AE+P P F + CRVG+G + +EL + KL +++
Sbjct: 468 GGYWGKGARGGMMSHFLCAVAEKPPAGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHWK 527
Query: 519 KYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPR 578
+ ++APP E+P+V+IE P S+I+ + + + S+++ +LRFPR
Sbjct: 528 PFH--RKAPPGSILC---GTEKPEVYIE-PCNSVIVQVKA-AEIVPSDMYKTGCTLRFPR 580
Query: 579 IDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSI 638
I+++R DK WH+C + L + G Y G ++ + K+ +++ K KK + I
Sbjct: 581 IEKIREDKEWHECTTLDDLEHLRGKAAGKLASKHLYVGDEEPQEKKRKAAPKA-KKVIGI 639
Query: 639 VPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTH 698
+ H ++S+I +++F D+ F + ++ L + E GG N T+
Sbjct: 640 I-EHLKAPNLSNINKVSNMFEDVEFCVMTGSDSHPKPDLESRIAEFGGYIVQNPGPD-TY 697
Query: 699 CVAADNKGLKYE--AAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEEV 756
CV A ++ ++ + + DV+ W+L+C + +H+ S+K+ +
Sbjct: 698 CVIAGSENIRVRNIISSNKHDVVKPEWLLECFRTQRCAPWQPRFMVHMCPSTKQHFARQY 757
Query: 757 DEFSDLYFWDLDLADIKQLLSNVDR--SEDPK----TIDYYKKKYC-PQDKWSCFHGCCI 809
D D YF D D+ +K++ S + + P+ I + +Y + S F +
Sbjct: 758 DCHGDSYFVDTDVNQLKEVFSGIKTPGEQTPREMAPVIADLEHRYAWDRAPLSMFRPHTV 817
Query: 810 YFYHSTEPLSPDWEVXXXXXXXXXXXEISFHGGKVCNNLANA-THVVVLSVLGYDVNFNS 868
Y P ++ E+ FHG +V ++LA +HV++ G D +S
Sbjct: 818 YPDLYAVINDPSTKIEGTRLAITAL-ELQFHGAEVVSHLAEGVSHVII----GED---HS 869
Query: 869 LTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEY 909
A + L +K ++ +W + + K + EE +Y
Sbjct: 870 RLADLKAFRRTL--KRKFKILPERWAIESIDKCELQEENQY 908
>UNIPROTKB|F1MB07 [details] [associations]
symbol:LIG4 "DNA ligase" species:9913 "Bos taurus"
[GO:0051402 "neuron apoptotic process" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0051102 "DNA ligation
involved in DNA recombination" evidence=IEA] [GO:0050769 "positive
regulation of neurogenesis" evidence=IEA] [GO:0048146 "positive
regulation of fibroblast proliferation" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0043524 "negative regulation
of neuron apoptotic process" evidence=IEA] [GO:0035019 "somatic
stem cell maintenance" evidence=IEA] [GO:0033153 "T cell receptor
V(D)J recombination" evidence=IEA] [GO:0033152 "immunoglobulin
V(D)J recombination" evidence=IEA] [GO:0033077 "T cell
differentiation in thymus" evidence=IEA] [GO:0032807 "DNA ligase IV
complex" evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0008283 "cell proliferation" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA] [GO:0007417 "central nervous
system development" evidence=IEA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=IEA] [GO:0005925 "focal adhesion" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0002328 "pro-B cell
differentiation" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333 PROSITE:PS00697
PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005886
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 GO:GO:0008283
GO:GO:0006260 GO:GO:0001701 GO:GO:0051402 GO:GO:0007417
GO:GO:0043524 GO:GO:0005925 GO:GO:0010332 GO:GO:0050769
GO:GO:0033077 GO:GO:0035019 GO:GO:0045190 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000793 GO:GO:0048146
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0010165
GO:GO:0051276 GO:GO:0000012 GO:GO:0005958 GO:GO:0006303
GO:GO:0033153 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GO:GO:0006297 KO:K10777
OMA:HMCPSTK GO:GO:0032807 CTD:3981 GO:GO:0051102 GO:GO:0033152
GO:GO:0002328 GeneTree:ENSGT00700000104500 EMBL:DAAA02034872
IPI:IPI00716207 RefSeq:NP_001178055.1 UniGene:Bt.7959
ProteinModelPortal:F1MB07 PRIDE:F1MB07 Ensembl:ENSBTAT00000021092
GeneID:781252 KEGG:bta:781252 NextBio:20924713 Uniprot:F1MB07
Length = 911
Score = 752 (269.8 bits), Expect = 2.0e-74, P = 2.0e-74
Identities = 203/571 (35%), Positives = 318/571 (55%)
Query: 12 LVSLFNWIQKTKPAAKKRSKFRKFLDTYC-----------DSVD-YFSALRLILPSLDRE 59
L S IQK+K A+K F+ FLD++ D D ++ A+RLILP L+RE
Sbjct: 19 LCSTLERIQKSKGRAEKIRHFKAFLDSWRKFHNALHKNQKDVTDSFYPAMRLILPQLERE 78
Query: 60 RGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKG-GAAPNAGNFPMVAAEVLQRRQG 118
R +YG+KE++LA I+ L + +D DA++L+N+R G +AG+F M+A VL+ R
Sbjct: 79 RMAYGIKETMLAKLYIELLNLPRDGKDALKLLNYRTPTGTRGDAGDFAMIAYFVLKPRC- 137
Query: 119 MISGGLTIKELNDLLDRLAS--SENRAE--KISVLSTLIKKTNAQEMKWIIMIILKDLKL 174
+ G L+I+++ND+LD +AS S R + K SVL LI +++A E KW+I +I+KDLKL
Sbjct: 138 LQKGSLSIQQVNDILDSIASNNSAKRKDLMKKSVLQ-LITQSSALEQKWLIRMIVKDLKL 196
Query: 175 GISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGD 234
G S+++IF FH DA +L NVT DL+ VC +L D + I + A +P LA I D
Sbjct: 197 GFSQQTIFSIFHSDAAELHNVTTDLEKVCRQLHDPSVGLSDISITLFSAFKPMLAA-IAD 255
Query: 235 AHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDH-SEYGHA-----MSKII 288
+ + + IE K DG+R+Q+HK+G YFSR+ ++ ++G + ++ I
Sbjct: 256 IERIEKDMKHQSFYIETKLDGERMQMHKDGDVYRYFSRNGYNYVDQFGASPQEGSLTPFI 315
Query: 289 EQNVLVD--RCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLY 346
+ CILDGEM+ ++ + F + G+ +I + D S+ Q CY FDVL
Sbjct: 316 HNAFKTEVLNCILDGEMMAYNPNTQTFMQKGNKFDIKRMVED---SELQT-CYCVFDVLM 371
Query: 347 VGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEV 406
V D + H++L++R+E+L V P GR+E + + Q AH EV
Sbjct: 372 VNDKKLGHETLRKRYEILNSVFTPVPGRIEIVQ---------KTQ--------AHTKKEV 414
Query: 407 EKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIXXXXXXX 465
E I+ R+EGI++K S ++P R WLK+KPEY+ D LD+LII
Sbjct: 415 IDALNEAIDKREEGIMVKHPLSIYKPDKRGEGWLKIKPEYVNGLMDELDILIIGGYWGKG 474
Query: 466 XXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKR 525
++ FL A++E+P P F + CRVG+G + +EL + KL +++ + ++
Sbjct: 475 ARGGMMSHFLCAVSEKPPSGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHWKPFH--RK 532
Query: 526 APPSFYQVTNNSKERPDVWIESPEKSIILSI 556
APPS + + E+P+V+IE P S+I+ +
Sbjct: 533 APPS--NILCGT-EKPEVYIE-PCNSVIVQV 559
Score = 472 (171.2 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
Identities = 137/524 (26%), Positives = 246/524 (46%)
Query: 400 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLII 458
AH EV E I+ R+EGI++K S ++P R WLK+KPEY+ D LD+LII
Sbjct: 408 AHTKKEVIDALNEAIDKREEGIMVKHPLSIYKPDKRGEGWLKIKPEYVNGLMDELDILII 467
Query: 459 XXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFR 518
++ FL A++E+P P F + CRVG+G + +EL + KL +++
Sbjct: 468 GGYWGKGARGGMMSHFLCAVSEKPPSGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHWK 527
Query: 519 KYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPR 578
+ ++APPS + + E+P+V+IE P S+I+ + + + S+++ +LRFPR
Sbjct: 528 PFH--RKAPPS--NILCGT-EKPEVYIE-PCNSVIVQVKAT-EIVPSDMYKTGCTLRFPR 580
Query: 579 IDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEY-GGLQDDKPKQFRSSRKGEKKNVS 637
I+++R DK W++C ++ +L + G Y GG DD+P++ + + K V
Sbjct: 581 IEKIREDKEWYECTSLEDLEQLRGKACGKLASRHLYLGG--DDEPQEKKRKAAPKMKKVI 638
Query: 638 IVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVT 697
+ H ++S++ +++F D+ F ++ ++ L + E GG N T
Sbjct: 639 GIIEHLKAPNLSNVNRVSTVFEDVEFCVMSGTSSHPKPDLENRIAELGGYIVQNPGPD-T 697
Query: 698 HCVAADNKGLKYE--AAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEE 755
+CV A ++ ++ + + + DV+ W+L+C + +H+ S+K+ +E
Sbjct: 698 YCVIAGSENIRVKNIISSDKHDVVKPEWLLECFRTRSCVPWQPRFMIHMCPSTKQHFAQE 757
Query: 756 VDEFSDLYFWDLDLADIKQLLSNVDRSED-------PKTIDYYKKKYCPQDKWSCFHGCC 808
D++ D YF D DL +K++ + + + P D + S F
Sbjct: 758 YDQYGDSYFVDTDLHQLKEVFLGIKNAGEQTPGEMSPVIADLEHRYSWASAPLSMFRHLT 817
Query: 809 IYF--YHSTEPLSPDWEVXXXXXXXXXXXEISFHGGKVCNNLANA-THVVVLSVLGYDVN 865
+Y Y LS + E+ FHG +V + LA +HV+V G D
Sbjct: 818 VYLDLYAVINDLSTRIK---GARLAITALELRFHGAQVVSCLAEGVSHVIV----GED-- 868
Query: 866 FNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEY 909
S A + L +K +++ +W+ + K + EE Y
Sbjct: 869 -QSRVADLKAIRRTL--KRKFKILQERWVTVSIDKCELQEENRY 909
Score = 43 (20.2 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 120 ISGGLTIKELNDLLDRLASSENRAEKI 146
++ + +L L+R+ S+ RAEKI
Sbjct: 10 VASHVPFADLCSTLERIQKSKGRAEKI 36
>UNIPROTKB|E2R0G7 [details] [associations]
symbol:LIG4 "DNA ligase" species:9615 "Canis lupus
familiaris" [GO:0051402 "neuron apoptotic process" evidence=IEA]
[GO:0051276 "chromosome organization" evidence=IEA] [GO:0051103
"DNA ligation involved in DNA repair" evidence=IEA] [GO:0051102
"DNA ligation involved in DNA recombination" evidence=IEA]
[GO:0050769 "positive regulation of neurogenesis" evidence=IEA]
[GO:0048146 "positive regulation of fibroblast proliferation"
evidence=IEA] [GO:0045190 "isotype switching" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0035019 "somatic stem cell maintenance"
evidence=IEA] [GO:0033153 "T cell receptor V(D)J recombination"
evidence=IEA] [GO:0033152 "immunoglobulin V(D)J recombination"
evidence=IEA] [GO:0033077 "T cell differentiation in thymus"
evidence=IEA] [GO:0032807 "DNA ligase IV complex" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0010165
"response to X-ray" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007417 "central nervous system development"
evidence=IEA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=IEA] [GO:0005925 "focal adhesion" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0002328 "pro-B cell
differentiation" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333 PROSITE:PS00697
PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005886
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 GO:GO:0008283
GO:GO:0006260 GO:GO:0001701 GO:GO:0051402 GO:GO:0007417
GO:GO:0043524 GO:GO:0005925 GO:GO:0010332 GO:GO:0050769
GO:GO:0033077 GO:GO:0035019 GO:GO:0045190 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000793 GO:GO:0048146
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0010165
GO:GO:0051276 GO:GO:0000012 GO:GO:0005958 GO:GO:0006303
GO:GO:0033153 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GO:GO:0006297 KO:K10777
OMA:HMCPSTK GO:GO:0032807 CTD:3981 GO:GO:0051102 GO:GO:0033152
GO:GO:0002328 GeneTree:ENSGT00700000104500 EMBL:AAEX03013370
RefSeq:XP_542663.2 ProteinModelPortal:E2R0G7
Ensembl:ENSCAFT00000009725 GeneID:485544 KEGG:cfa:485544
NextBio:20859524 Uniprot:E2R0G7
Length = 911
Score = 747 (268.0 bits), Expect = 7.7e-74, P = 7.7e-74
Identities = 200/570 (35%), Positives = 315/570 (55%)
Query: 12 LVSLFNWIQKTKPAAKKRSKFRKFLDT---YCDSV---------DYFSALRLILPSLDRE 59
L S IQ++K +K FR+FLD+ + D++ ++ A+RLILP L+RE
Sbjct: 19 LCSTLERIQRSKGREEKIRHFREFLDSWRRFHDALHKNQKDVRDSFYPAMRLILPQLERE 78
Query: 60 RGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKG-GAAPNAGNFPMVAAEVLQRRQG 118
R +YG+KE++LA I+ L + K+ DA++L+N+R G +AG+F +A VL+ R
Sbjct: 79 RMAYGIKETMLAKLYIELLNLPKEGKDALKLLNYRTPTGTRGDAGDFATIAYFVLKPRC- 137
Query: 119 MISGGLTIKELNDLLDRLASSENRAEKISV---LSTLIKKTNAQEMKWIIMIILKDLKLG 175
+ G LTI+++ND+LD +AS+ + +K + L LI +++A E KW+I +I+KDLKLG
Sbjct: 138 LQKGSLTIQQVNDILDSIASNNSARKKDLIKKSLLQLITQSSALEQKWLIRMIVKDLKLG 197
Query: 176 ISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDA 235
SE+S+F FH DA +L NVT DL+ VC +L D + I + A +P LA I D
Sbjct: 198 FSEQSVFSAFHNDAAELHNVTTDLEKVCRQLHDPSIGLSDISITLFSAFKPMLAA-IADI 256
Query: 236 HAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGHA-----MSKIIE 289
+ + + IE K DG+R+Q+HK+G YFSR+ ++++ +G + ++ I
Sbjct: 257 ERIEKDMKHQSFYIETKLDGERMQMHKDGDVYQYFSRNGYNYTDQFGDSPREGSLTPFIH 316
Query: 290 QNVLVDR--CILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYV 347
D CILDGEM+ ++ + F + G+ +I + D SD Q CY FDVL V
Sbjct: 317 SAFKTDVQICILDGEMMAFNPNTQTFMQKGNKFDIKRMVED---SDLQT-CYCVFDVLMV 372
Query: 348 GDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVE 407
+ + ++LK+R+E+L V P GR+E + + Q AH EV
Sbjct: 373 NNKKLGRETLKKRYEILTSVFTPIPGRIEIVQ---------KTQ--------AHTKKEVI 415
Query: 408 KFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIXXXXXXXX 466
E I+ R+EGI++K S ++P R WLK+KPEY+ D LD+LI+
Sbjct: 416 DALNEAIDKREEGIMIKHPLSIYKPDKRGEGWLKIKPEYVDGLMDELDILIVGGYWGKGS 475
Query: 467 XXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRA 526
++ FL A+AE+P P P F + CRVG+G + +EL + KL +++ + K+A
Sbjct: 476 RGGMMSHFLCAVAEKPPPGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHWKPFH--KKA 533
Query: 527 PPSFYQVTNNSKERPDVWIESPEKSIILSI 556
PS E+P+V+IE P S+I+ +
Sbjct: 534 LPSSILC---GTEKPEVYIE-PCNSVIVQV 559
Score = 525 (189.9 bits), Expect = 5.5e-46, Sum P(2) = 5.5e-46
Identities = 150/525 (28%), Positives = 255/525 (48%)
Query: 400 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLII 458
AH EV E I+ R+EGI++K S ++P R WLK+KPEY+ D LD+LI+
Sbjct: 408 AHTKKEVIDALNEAIDKREEGIMIKHPLSIYKPDKRGEGWLKIKPEYVDGLMDELDILIV 467
Query: 459 XXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFR 518
++ FL A+AE+P P P F + CRVG+G + +EL + KL +++
Sbjct: 468 GGYWGKGSRGGMMSHFLCAVAEKPPPGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHWK 527
Query: 519 KYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPR 578
+ K+A PS E+P+V+IE P S+I+ + + + S+++ +LRFPR
Sbjct: 528 PFH--KKALPSSILC---GTEKPEVYIE-PCNSVIVQVKAT-EIVSSDMYKTGCTLRFPR 580
Query: 579 IDRVRYDKPWHDCLDVQSFVELVHSSNGT-TQKGKEYGGLQDDKPKQF-RSSRKGEKKNV 636
I+++R DK WH+C V +L ++G K + GG DD+P++ R + KK +
Sbjct: 581 IEKIREDKEWHECTTVDDLEQLRGKASGKLASKHLDIGG--DDEPQEKKRKAAPKIKKII 638
Query: 637 SIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSV 696
I+ H ++S+I ++IF D+ F ++ ++ L + E GG N
Sbjct: 639 GII-EHLKAPNLSNINKVSNIFEDVEFCVMSGTDSHPKPDLENRIAEFGGYIVQNPGPD- 696
Query: 697 THCVAADNKGLKYE--AAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQE 754
T+CV A ++ ++ + + + DV+ W+L+C + +H+ S+K+
Sbjct: 697 TYCVIAGSENIRVKNIISSNKHDVVKPEWLLECFKTKSCVPWQPRFMIHMCPSTKEHFAR 756
Query: 755 EVDEFSDLYFWDLDLADIKQLLSNVDRS--EDPKT----IDYYKKKYCPQDKWSC-FHGC 807
E D + D YF DLDL +K++ S + S + P+ I + +Y C F C
Sbjct: 757 EYDCYGDSYFVDLDLNQLKEVFSGIKNSSKQTPREMASLIADLEYRYSWDRSPLCLFRHC 816
Query: 808 CIYF--YHSTEPLSPDWEVXXXXXXXXXXXEISFHGGKVCNNLANA-THVVVLSVLGYDV 864
+Y Y LS E E+ FHG KV + LA +HV++ G D
Sbjct: 817 IVYLDLYAVINDLSTKIE---GTRLAITALELRFHGAKVVSCLAQGVSHVII----GEDH 869
Query: 865 NFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEY 909
+ ++ +SF K +K +++ W+ + + K + EE +Y
Sbjct: 870 SRVAVLKSFRRTLK-----RKFKILQQDWVTESIDKCELQEENQY 909
Score = 37 (18.1 bits), Expect = 5.5e-46, Sum P(2) = 5.5e-46
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 120 ISGGLTIKELNDLLDRLASSENRAEKI 146
++ + +L L+R+ S+ R EKI
Sbjct: 10 VASHVPFADLCSTLERIQRSKGREEKI 36
>POMBASE|SPCC1183.05c [details] [associations]
symbol:lig4 "DNA ligase Lig4" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003910 "DNA ligase (ATP) activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IC] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0032807 "DNA ligase IV complex" evidence=TAS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
PomBase:SPCC1183.05c GO:GO:0005524 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006303 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574 GO:GO:0032807
OrthoDB:EOG41K2MD PIR:T40845 RefSeq:NP_587888.2
ProteinModelPortal:O74833 STRING:O74833 PRIDE:O74833
EnsemblFungi:SPCC1183.05c.1 GeneID:2539042 NextBio:20800216
Uniprot:O74833
Length = 913
Score = 712 (255.7 bits), Expect = 2.7e-72, Sum P(2) = 2.7e-72
Identities = 187/578 (32%), Positives = 286/578 (49%)
Query: 44 DYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAG 103
D + LRL+LP LDRERGSYG KE L I A+ +S S DA L NWR G + + G
Sbjct: 70 DLYPLLRLMLPDLDRERGSYGFKEFGLGKLFIRAMHLSPTSEDAKSLKNWR-GSESKHTG 128
Query: 104 NFPMVAAEVLQRRQ-GMISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMK 162
+F + ++LQRR G T+ ++N LLD+LA + + ++++L + + E++
Sbjct: 129 DFSTMLQDILQRRAYRTFPGAFTVGDVNALLDQLADASSEDTRVNILEQFYRSLSPLELR 188
Query: 163 WIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKD--RNQRHKRQDIEV 220
W+I I+LK K G SEK I FHPDA L+ + LK +C +L D R+ D+EV
Sbjct: 189 WLIPILLKVRKYGTSEKFILSVFHPDAARLYRLCSSLKRICWELYDPSRSLDETETDVEV 248
Query: 221 GKAVRPQLA-MRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE 279
+PQLA + D H + K IE K DG+RIQ+H + + ++SR+ ++
Sbjct: 249 FSCFQPQLANFKKKDLHQTLEAMGNKPFWIEEKLDGERIQLHMSSGKFQFYSRNARSYT- 307
Query: 280 YGHAMSKIIEQNVL-----------VDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARD 328
Y + S EQ+ L + + ILDGEM+ WD L +GS + I + D
Sbjct: 308 YAYGSSYFDEQSRLTQYIIGAFDKRISQIILDGEMVTWDPVLETVIPYGSLRSIFE---D 364
Query: 329 GLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHV 388
S Y FD+LY+ S++ SL+ R +L+KV+ R+ L
Sbjct: 365 SSSHSSYSPYYVVFDILYLNGKSLVKYSLESRRRILEKVIVRESHRMSIL---------- 414
Query: 389 RPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIR 448
P V ++++E + I+ EG+V+K + G+R W+K+KP Y++
Sbjct: 415 -PYK------VGSTIEDIEAELRNVIQEGSEGLVIKKPSGSYHLGERMDDWIKVKPYYLQ 467
Query: 449 A-GSDLDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLS--DEE 505
G DLD LI+ ++ FL L P + +F SF RVG G + D +
Sbjct: 468 GFGEDLDCLILGGYFGRGKQSGKINSFLCGLRMDYTPKDHSEKFQSFVRVGGGFTYFDRD 527
Query: 506 LDAVVTKLK--PYFRK-YEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRT 562
+ T+ K P+ EY + A T E+PD+WI P+ S++L I +
Sbjct: 528 IIRKETEGKWLPWSSDALEYMELAG------TKQDFEKPDMWIH-PKDSLVLQIKA-AEV 579
Query: 563 IRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVEL 600
+ S F Y+LRFPR+++VR D+ W D L + F L
Sbjct: 580 VVSNRFKTNYTLRFPRLEKVRLDRSWKDALTINEFFTL 617
Score = 305 (112.4 bits), Expect = 3.4e-23, P = 3.4e-23
Identities = 103/390 (26%), Positives = 175/390 (44%)
Query: 399 VAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLI 457
V ++++E + I+ EG+V+K + G+R W+K+KP Y++ G DLD LI
Sbjct: 418 VGSTIEDIEAELRNVIQEGSEGLVIKKPSGSYHLGERMDDWIKVKPYYLQGFGEDLDCLI 477
Query: 458 IXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYF 517
+ ++ FL L P + +F SF RVG G + + D + + +
Sbjct: 478 LGGYFGRGKQSGKINSFLCGLRMDYTPKDHSEKFQSFVRVGGGFTYFDRDIIRKETEG-- 535
Query: 518 RKYEYPKRAPPSFYQVTNNSK---ERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSL 574
K+ P + Y +K E+PD+WI P+ S++L I + + S F Y+L
Sbjct: 536 -KW-LPWSSDALEYMELAGTKQDFEKPDMWIH-PKDSLVLQIKA-AEVVVSNRFKTNYTL 591
Query: 575 RFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKK 634
RFPR+++VR D+ W D L + F L ++ +K ++ +K ++ R+ +KK
Sbjct: 592 RFPRLEKVRLDRSWKDALTINEFFTLKNA----VEK-QDNVSFHVNKKRKVSQKREKQKK 646
Query: 635 NVSIVPSHFLQTDVSDIKGETSIFSDMV--FYFVNVPPAYSLDS---LHKMVVENGGTFS 689
FL D K E S SD++ +FV +PP ++ L ++++ENGG
Sbjct: 647 --------FLY-DEPTFKKEASPHSDVLKNLHFVVLPPTELHETKAGLQQIIIENGGLIH 697
Query: 690 MNLNNSVTH--CVAADNKGLKY--EAAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLS 745
+ N + AD + E +K +I WV+D S YL S
Sbjct: 698 QGVGNFGKERLFLVADRVSTRVSIERSKNMCTIIRSQWVMD--SVNNQRLMPQWSYLLFS 755
Query: 746 DSSKKKLQEEVDEFSDLYFWDLDLADIKQL 775
K + ++ S +L L ++KQL
Sbjct: 756 KDEKYSWKTALESLSAKSLSNL-LVELKQL 784
Score = 46 (21.3 bits), Expect = 2.7e-72, Sum P(2) = 2.7e-72
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 888 VVRSQWLEDCLAKEQKSEEYEYSL 911
++RSQW+ D + ++ ++ Y L
Sbjct: 730 IIRSQWVMDSVNNQRLMPQWSYLL 753
>RGD|1304639 [details] [associations]
symbol:Lig4 "ligase IV, DNA, ATP-dependent" species:10116
"Rattus norvegicus" [GO:0000012 "single strand break repair"
evidence=IEA;ISO] [GO:0000793 "condensed chromosome"
evidence=IEA;ISO] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0002328 "pro-B cell differentiation"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=ISO;IDA]
[GO:0003909 "DNA ligase activity" evidence=ISO] [GO:0003910 "DNA
ligase (ATP) activity" evidence=ISO;IDA] [GO:0005524 "ATP binding"
evidence=ISO;IDA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0005886 "plasma membrane" evidence=IEA;ISO]
[GO:0005925 "focal adhesion" evidence=IEA;ISO] [GO:0005958
"DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=IEA;ISO] [GO:0006266 "DNA ligation" evidence=ISO;IDA]
[GO:0006273 "lagging strand elongation" evidence=IBA] [GO:0006281
"DNA repair" evidence=ISO] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IEA;ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=ISO;IBA] [GO:0007417 "central
nervous system development" evidence=IEA;ISO] [GO:0008022 "protein
C-terminus binding" evidence=IEA;ISO] [GO:0008283 "cell
proliferation" evidence=IEA;ISO] [GO:0010165 "response to X-ray"
evidence=IEA;ISO] [GO:0010212 "response to ionizing radiation"
evidence=ISO] [GO:0010332 "response to gamma radiation"
evidence=IEA;ISO] [GO:0016874 "ligase activity" evidence=ISO]
[GO:0032807 "DNA ligase IV complex" evidence=ISO;IBA] [GO:0033077
"T cell differentiation in thymus" evidence=IEA;ISO] [GO:0033151
"V(D)J recombination" evidence=ISO;IBA] [GO:0033152 "immunoglobulin
V(D)J recombination" evidence=IEA;ISO] [GO:0033153 "T cell receptor
V(D)J recombination" evidence=IEA;ISO] [GO:0035019 "somatic stem
cell maintenance" evidence=IEA;ISO] [GO:0043524 "negative
regulation of neuron apoptotic process" evidence=IEA;ISO]
[GO:0045190 "isotype switching" evidence=IEA;ISO] [GO:0048146
"positive regulation of fibroblast proliferation" evidence=IEA;ISO]
[GO:0050769 "positive regulation of neurogenesis" evidence=IEA;ISO]
[GO:0051102 "DNA ligation involved in DNA recombination"
evidence=IEA;ISO] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA;ISO] [GO:0051276 "chromosome organization"
evidence=IEA;ISO] [GO:0051402 "neuron apoptotic process"
evidence=IEA;ISO] [GO:0070419 "nonhomologous end joining complex"
evidence=ISO] [GO:0071285 "cellular response to lithium ion"
evidence=IEP] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
RGD:1304639 GO:GO:0005886 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0003677 GO:GO:0008283 GO:GO:0001701 GO:GO:0051402
GO:GO:0007417 GO:GO:0043524 GO:GO:0005925 GO:GO:0010332
GO:GO:0050769 GO:GO:0033077 GO:GO:0035019 GO:GO:0045190
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000793
GO:GO:0048146 EMBL:CH473970 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0010165 GO:GO:0051276 GO:GO:0000012
GO:GO:0005958 GO:GO:0006303 GO:GO:0006289 GO:GO:0033153
GO:GO:0071285 GO:GO:0006273 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
GO:GO:0006297 KO:K10777 OMA:HMCPSTK GO:GO:0032807 CTD:3981
OrthoDB:EOG4Q58NP GO:GO:0033151 GO:GO:0051102 GO:GO:0033152
GO:GO:0002328 GeneTree:ENSGT00700000104500 IPI:IPI00202196
RefSeq:NP_001099565.1 UniGene:Rn.219326 Ensembl:ENSRNOT00000019615
GeneID:290907 KEGG:rno:290907 UCSC:RGD:1304639 NextBio:631821
Uniprot:D4A0U6
Length = 911
Score = 732 (262.7 bits), Expect = 4.2e-72, P = 4.2e-72
Identities = 196/570 (34%), Positives = 313/570 (54%)
Query: 12 LVSLFNWIQKTKPAAKKRSKFRKFLDT---YCDSV---------DYFSALRLILPSLDRE 59
L S IQK K A+K F++FLD+ + D++ ++ A+RLILP L+RE
Sbjct: 19 LCSTLERIQKGKDRAEKIRHFKEFLDSWRKFHDALHKNKKDVPDSFYPAMRLILPQLERE 78
Query: 60 RGSYGLKESVLANCLIDALGMSKDSADAVRLINWRK-GGAAPNAGNFPMVAAEVLQRRQG 118
R +YG+KE++LA I+ L + ++ DA +L+N+R GA +AG+F +A VL+ R
Sbjct: 79 RMAYGIKETMLAKLYIELLNLPREGKDAQKLLNYRTPSGARSDAGDFATIAYFVLKPRC- 137
Query: 119 MISGGLTIKELNDLLDRLASSENRAEKISV---LSTLIKKTNAQEMKWIIMIILKDLKLG 175
+ G LTI+++N+LLD +AS+ + K V L LI + +A E KW+I +I+KDLKLG
Sbjct: 138 LQKGSLTIQKVNELLDLVASNNSGKRKDLVKKSLLQLITQCSALEQKWLIRMIIKDLKLG 197
Query: 176 ISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDA 235
+S+ +I FH DA +L NVT DL+ VC +L D + I + A RP LA + D
Sbjct: 198 VSQHTILSIFHNDAVELHNVTTDLEKVCRQLHDPSVGLSDISITLFSAFRPMLAA-VADV 256
Query: 236 HAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGHA-----MSKIIE 289
+ + + IE K DG+R+Q+HK+G+ YFSR+ ++++ +G + ++ I
Sbjct: 257 ERVEKDMKQQSFYIETKLDGERMQMHKDGALYRYFSRNGYNYTDQFGESPQEGSLTPFIH 316
Query: 290 QNVLVDR--CILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYV 347
D CILDGEM+ ++ + F + G +I + D SD Q CY FDVL V
Sbjct: 317 NAFKTDVQVCILDGEMMAYNPTTQTFMQKGVKFDIKRMVED---SDLQT-CYCVFDVLMV 372
Query: 348 GDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVE 407
+ + ++L++R+++L P +GR+E + + Q A EV
Sbjct: 373 NNKKLGRETLRKRYDILSSTFTPIQGRIEIVQ---------KTQ--------AQTKQEVV 415
Query: 408 KFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIXXXXXXXX 466
+ I+ R+EGI++K S ++P R WLK+KPEY+ D LD+LI+
Sbjct: 416 DALNDAIDKREEGIMVKHPLSIYKPDKRGEGWLKIKPEYVTGLMDELDLLIVGGYWGKGS 475
Query: 467 XXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRA 526
++ FL A+AE P P P F + CRVG+G + +EL + KL Y++ ++ +++
Sbjct: 476 RGGMMSHFLCAVAETPPPGDKPSVFHTLCRVGSGYTMKELYDLGLKLAKYWKPFQ--RKS 533
Query: 527 PPSFYQVTNNSKERPDVWIESPEKSIILSI 556
PPS E+P+V+IE P+ S+I+ I
Sbjct: 534 PPSCILC---GTEKPEVYIE-PQNSVIVQI 559
Score = 500 (181.1 bits), Expect = 1.9e-43, Sum P(2) = 1.9e-43
Identities = 157/557 (28%), Positives = 258/557 (46%)
Query: 373 GRLETLVPDHG-LNSHVRP-QG--EPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGS 428
GR ETL + L+S P QG E A EV + I+ R+EGI++K S
Sbjct: 378 GR-ETLRKRYDILSSTFTPIQGRIEIVQKTQAQTKQEVVDALNDAIDKREEGIMVKHPLS 436
Query: 429 KWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTY 487
++P R WLK+KPEY+ D LD+LI+ ++ FL A+AE P P
Sbjct: 437 IYKPDKRGEGWLKIKPEYVTGLMDELDLLIVGGYWGKGSRGGMMSHFLCAVAETPPPGDK 496
Query: 488 PRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIES 547
P F + CRVG+G + +EL + KL Y++ ++ +++PPS E+P+V+IE
Sbjct: 497 PSVFHTLCRVGSGYTMKELYDLGLKLAKYWKPFQ--RKSPPSCILC---GTEKPEVYIE- 550
Query: 548 PEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGT 607
P+ S+I+ I + + S+++ +LRFPRI+++R DK WHDC+ + +L ++G
Sbjct: 551 PQNSVIVQIKA-AEIVPSDMYKTGSTLRFPRIEKIRDDKEWHDCMTLDDLEQLRGKASGK 609
Query: 608 TQKGKEYGGLQDDKPKQFRSSRKGE-KKNVSIVPSHFLQTDVSDIKGETSIFSDMVFYFV 666
+ G DD+P++ R + KK + I+ H ++S+I +++F D+ F +
Sbjct: 610 LATKHLHIG-DDDEPREKRRKPISKTKKTIGII-EHLKAPNLSNINKVSNVFEDVEFCVM 667
Query: 667 NVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYE--AAKRRGDVIHYSWV 724
+ Y L + E GG N T+CV A ++ ++ + R DV+ W+
Sbjct: 668 SGLDGYPKPDLENKIAEFGGYIVQNPGPD-TYCVIAGSENIRVRNIISSDRHDVVKPEWL 726
Query: 725 LDCCSXXXXXXXXXXYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSED 784
L+C + +H+ S+K+ E D + D YF D DL +K++ + SE
Sbjct: 727 LECFKTKTCVPWQPRFMIHMCPSTKQHFAREYDCYGDSYFVDADLDQLKEVFLRIKPSEQ 786
Query: 785 -------PKTIDYYKKKYCPQDKWSCFHGCCIYF--YHSTEPLSPDWEVXXXXXXXXXXX 835
P D + S F +Y Y LS E
Sbjct: 787 QTPEEMAPVIADLECRYSWDHSPLSMFRHYTVYLDLYAVINDLSSKIEATRLGVTAL--- 843
Query: 836 EISFHGGKVCNNLANA-THVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWL 894
E+ F G KV + L+ +HV++ G D S ++F K KK +++ +W+
Sbjct: 844 ELRFRGAKVVSRLSEGVSHVII----GEDQRRVSDFKTFRRTLK-----KKFKILQERWV 894
Query: 895 EDCLAKEQKSEEYEYSL 911
D + K + EE Y L
Sbjct: 895 IDSVDKCELQEENLYLL 911
Score = 40 (19.1 bits), Expect = 1.9e-43, Sum P(2) = 1.9e-43
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 120 ISGGLTIKELNDLLDRLASSENRAEKI 146
++ + +L L+R+ ++RAEKI
Sbjct: 10 VAAHVPFADLCSTLERIQKGKDRAEKI 36
>MGI|MGI:1335098 [details] [associations]
symbol:Lig4 "ligase IV, DNA, ATP-dependent" species:10090
"Mus musculus" [GO:0000012 "single strand break repair"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=ISO] [GO:0001701 "in
utero embryonic development" evidence=IMP] [GO:0002328 "pro-B cell
differentiation" evidence=IMP] [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003909 "DNA ligase activity" evidence=ISO]
[GO:0003910 "DNA ligase (ATP) activity" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO;IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005694 "chromosome" evidence=IBA] [GO:0005958 "DNA-dependent
protein kinase-DNA ligase 4 complex" evidence=ISO;IDA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006266 "DNA ligation"
evidence=ISO;IMP;IDA] [GO:0006273 "lagging strand elongation"
evidence=IBA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0006289
"nucleotide-excision repair" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO;IGI;IMP]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=ISO;IMP] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007417
"central nervous system development" evidence=IGI;IMP] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0010165 "response to X-ray"
evidence=ISO] [GO:0010212 "response to ionizing radiation"
evidence=IMP] [GO:0010332 "response to gamma radiation"
evidence=IMP] [GO:0016874 "ligase activity" evidence=ISO]
[GO:0032807 "DNA ligase IV complex" evidence=ISO;IBA] [GO:0033077
"T cell differentiation in thymus" evidence=IMP] [GO:0033151 "V(D)J
recombination" evidence=ISO;IMP;IDA] [GO:0033152 "immunoglobulin
V(D)J recombination" evidence=IMP] [GO:0033153 "T cell receptor
V(D)J recombination" evidence=IMP] [GO:0035019 "somatic stem cell
maintenance" evidence=IMP] [GO:0043524 "negative regulation of
neuron apoptotic process" evidence=IGI;IMP] [GO:0045190 "isotype
switching" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048146 "positive regulation of fibroblast
proliferation" evidence=IMP] [GO:0050769 "positive regulation of
neurogenesis" evidence=IMP] [GO:0051102 "DNA ligation involved in
DNA recombination" evidence=IMP] [GO:0051103 "DNA ligation involved
in DNA repair" evidence=ISO;IMP] [GO:0051276 "chromosome
organization" evidence=IGI] [GO:0051301 "cell division"
evidence=IEA] [GO:0051402 "neuron apoptotic process" evidence=IGI]
[GO:0070419 "nonhomologous end joining complex" evidence=ISO]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 MGI:MGI:1335098
Pfam:PF00533 GO:GO:0005524 GO:GO:0005694 GO:GO:0051301
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0001701
GO:GO:0051402 GO:GO:0007417 GO:GO:0043524 GO:GO:0010332
GO:GO:0007049 GO:GO:0050769 GO:GO:0033077 GO:GO:0035019
GO:GO:0045190 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0048146 EMBL:CH466566 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0051276 GO:GO:0005958 GO:GO:0006303
GO:GO:0006289 GO:GO:0033153 GO:GO:0006273 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 KO:K10777 OMA:HMCPSTK GO:GO:0032807 CTD:3981
HOGENOM:HOG000007831 HOVERGEN:HBG005516 OrthoDB:EOG4Q58NP
GO:GO:0051102 GO:GO:0033152 GO:GO:0002328 EMBL:AK030029
EMBL:AK148081 EMBL:AC138397 IPI:IPI00225019 RefSeq:NP_795927.2
UniGene:Mm.80584 ProteinModelPortal:Q8BTF7 STRING:Q8BTF7
PhosphoSite:Q8BTF7 PRIDE:Q8BTF7 Ensembl:ENSMUST00000095476
Ensembl:ENSMUST00000170033 GeneID:319583 KEGG:mmu:319583
UCSC:uc009kul.1 GeneTree:ENSGT00700000104500 InParanoid:Q8BTF7
NextBio:395028 CleanEx:MM_LIG4 Genevestigator:Q8BTF7
GermOnline:ENSMUSG00000049717 Uniprot:Q8BTF7
Length = 911
Score = 729 (261.7 bits), Expect = 9.2e-72, P = 9.2e-72
Identities = 193/544 (35%), Positives = 301/544 (55%)
Query: 12 LVSLFNWIQKTKPAAKKRSKFRKFLDTYC-----------DSVD-YFSALRLILPSLDRE 59
L S IQK K A+K F++FLD++ D D ++ A+RLILP L+RE
Sbjct: 19 LCSTLERIQKGKDRAEKIRHFKEFLDSWRKFHDALHKNRKDVTDSFYPAMRLILPQLERE 78
Query: 60 RGSYGLKESVLANCLIDALGMSKDSADAVRLINWRK-GGAAPNAGNFPMVAAEVLQRRQG 118
R +YG+KE++LA I+ L + ++ DA +L+N+R GA +AG+F M+A VL+ R
Sbjct: 79 RMAYGIKETMLAKLYIELLNLPREGKDAQKLLNYRTPSGARTDAGDFAMIAYFVLKPRC- 137
Query: 119 MISGGLTIKELNDLLDRLASSENRAEKISV---LSTLIKKTNAQEMKWIIMIILKDLKLG 175
+ G LTI+++N+LLD +AS+ + +K V L LI +++A E KW+I +I+KDLKLG
Sbjct: 138 LQKGSLTIQQVNELLDLVASNNSGKKKDLVKKSLLQLITQSSALEQKWLIRMIIKDLKLG 197
Query: 176 ISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDA 235
IS+++IF FH DA +L NVT DL+ VC +L D + I + A +P LA + D
Sbjct: 198 ISQQTIFSIFHNDAVELHNVTTDLEKVCRQLHDPSVGLSDISITLFSAFKPMLAA-VADV 256
Query: 236 HAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGHA-----MSKIIE 289
+ + + IE K DG+R+Q+HK+G+ YFSR+ ++++ +G + ++ I
Sbjct: 257 ERVEKDMKQQSFYIETKLDGERMQMHKDGALYRYFSRNGYNYTDQFGESPQEGSLTPFIH 316
Query: 290 Q--NVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARD-GLSSDRQVLCYFAFDVLY 346
V CILDGEM+ ++ + F + G +I + D GL + CY FDVL
Sbjct: 317 NAFGTDVQACILDGEMMAYNPTTQTFMQKGVKFDIKRMVEDSGLQT-----CYSVFDVLM 371
Query: 347 VGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEV 406
V + ++L++R+E+L P +GR+E + + Q AH EV
Sbjct: 372 VNKKKLGRETLRKRYEILSSTFTPIQGRIEIVQ---------KTQ--------AHTKKEV 414
Query: 407 EKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIXXXXXXX 465
+ I+ R+EGI++K S ++P R WLK+KPEY+ D LDVLI+
Sbjct: 415 VDALNDAIDKREEGIMVKHPLSIYKPDKRGEGWLKIKPEYVSGLMDELDVLIVGGYWGKG 474
Query: 466 XXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKR 525
++ FL A+AE P P P F + CRVG+G + +EL + KL Y++ + K+
Sbjct: 475 SRGGMMSHFLCAVAETPPPGDRPSVFHTLCRVGSGYTMKELYDLGLKLAKYWKPFH--KK 532
Query: 526 APPS 529
+PPS
Sbjct: 533 SPPS 536
Score = 517 (187.1 bits), Expect = 2.2e-45, Sum P(2) = 2.2e-45
Identities = 166/587 (28%), Positives = 271/587 (46%)
Query: 342 FDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHG-LNSHVRP-QG--EPCWS 397
FD+ + + S + Q+ ++L V K GR ETL + L+S P QG E
Sbjct: 349 FDIKRMVEDSGL-QTCYSVFDVLM-VNKKKLGR-ETLRKRYEILSSTFTPIQGRIEIVQK 405
Query: 398 LVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVL 456
AH EV + I+ R+EGI++K S ++P R WLK+KPEY+ D LDVL
Sbjct: 406 TQAHTKKEVVDALNDAIDKREEGIMVKHPLSIYKPDKRGEGWLKIKPEYVSGLMDELDVL 465
Query: 457 IIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPY 516
I+ ++ FL A+AE P P P F + CRVG+G + +EL + KL Y
Sbjct: 466 IVGGYWGKGSRGGMMSHFLCAVAETPPPGDRPSVFHTLCRVGSGYTMKELYDLGLKLAKY 525
Query: 517 FRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRF 576
++ + K++PPS E+P+V+IE P+ S+I+ I + + S+++ +LRF
Sbjct: 526 WKPFH--KKSPPSSILC---GTEKPEVYIE-PQNSVIVQIKA-AEIVPSDMYKTGSTLRF 578
Query: 577 PRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNV 636
PRI+++R DK WH+C+ + +L ++G + G DD+P++ R + K
Sbjct: 579 PRIEKIRDDKEWHECMTLGDLEQLRGKASGKLATKHLHVG-DDDEPREKRRKPISKTKKA 637
Query: 637 SIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSV 696
+ H ++S++ +++F D+ F ++ Y L + E GG N
Sbjct: 638 IRIIEHLKAPNLSNVNKVSNVFEDVEFCVMSGLDGYPKADLENRIAEFGGYIVQNPGPD- 696
Query: 697 THCVAA--DNKGLKYEAAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQE 754
T+CV A +N +K + + DV+ W+L+C + +H+ S+K+
Sbjct: 697 TYCVIAGSENVRVKNIISSDKNDVVKPEWLLECFKTKTCVPWQPRFMIHMCPSTKQHFAR 756
Query: 755 EVDEFSDLYFWDLDLADIKQLLSNVDRSED-------PKTIDYYKKKYCPQDKWSCFHGC 807
E D + D YF D DL +K++ + SE P D + S F
Sbjct: 757 EYDCYGDSYFVDTDLDQLKEVFLGIKPSEQQTPEEMAPVIADLECRYSWDHSPLSMFRHY 816
Query: 808 CIYF--YHSTEPLSPDWEVXXXXXXXXXXXEISFHGGKVCNNLANA-THVVVLSVLGYDV 864
IY Y LS E E+ FHG KV + L+ +HV++ G D
Sbjct: 817 TIYLDLYAVINDLSSRIEATRLGITAL---ELRFHGAKVVSCLSEGVSHVII----GEDQ 869
Query: 865 NFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSL 911
+T+ F + L KK +++ W+ D + K + EE +Y L
Sbjct: 870 R--RVTD-FKIFRRML--KKKFKILQESWVSDSVDKGELQEENQYLL 911
Score = 40 (19.1 bits), Expect = 2.2e-45, Sum P(2) = 2.2e-45
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 120 ISGGLTIKELNDLLDRLASSENRAEKI 146
++ + +L L+R+ ++RAEKI
Sbjct: 10 VAAHVPFADLCSTLERIQKGKDRAEKI 36
>ZFIN|ZDB-GENE-070820-10 [details] [associations]
symbol:lig4 "ligase IV, DNA, ATP-dependent"
species:7955 "Danio rerio" [GO:0051103 "DNA ligation involved in
DNA repair" evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
ZFIN:ZDB-GENE-070820-10 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OMA:HMCPSTK GeneTree:ENSGT00700000104500
EMBL:BX908780 IPI:IPI00860741 Ensembl:ENSDART00000085648
Bgee:F1Q9E8 Uniprot:F1Q9E8
Length = 909
Score = 710 (255.0 bits), Expect = 1.3e-69, P = 1.3e-69
Identities = 186/546 (34%), Positives = 299/546 (54%)
Query: 10 IVLVSLFNWIQKTKPAAKKRSKFRKFLDTYC-----------DSVD-YFSALRLILPSLD 57
I L ++ IQKTK K ++F+D++ D+ D +++ +RLI+PS +
Sbjct: 22 IHLCTVLEKIQKTKLRPDKSKILKEFIDSWRNFHAALHKDNPDTADSFYAVMRLIVPSFE 81
Query: 58 RERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPN-AGNFPMVAAEVLQRR 116
RER +YG+KE++LA I+ LG+ K+ +A +L+N+R + AG+F ++A VL++R
Sbjct: 82 RERMAYGIKENMLAKLYIEVLGLPKNGDEANKLLNYRAPTTSQGEAGDFALMAYFVLKKR 141
Query: 117 QGMISGGLTIKELNDLLDRLASSENRAEKISV---LSTLIKKTNAQEMKWIIMIILKDLK 173
G L+IKE+ND LD +A + +K V L LI +++A E KW+I +ILKD+K
Sbjct: 142 CTS-QGNLSIKEVNDFLDSVAINNASKQKDQVKKSLLHLITQSSALEQKWLIRMILKDMK 200
Query: 174 LGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIG 233
LGIS++++ FHPDA + +NVT DL VC +L D + I++ A +P LA +
Sbjct: 201 LGISKETVLQVFHPDAPEFYNVTTDLNKVCRQLHDPSVSLSEVSIDLFSAFKPMLAA-VA 259
Query: 234 DAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGHA-----MSKI 287
+ +++ + IE K DG+RIQ+HK G Y++R+ ++++ +G + ++
Sbjct: 260 NIRQIEKQMGNRPFYIETKLDGERIQLHKAGDVYKYYTRNSYEYTQQFGASPLEGSLTPY 319
Query: 288 IEQNVL---VDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDV 344
I NV V CILDGEM+ ++ F + GS +I + D SD Q C+ FDV
Sbjct: 320 IH-NVFSPHVVNCILDGEMMAYNPKTETFMQKGSKFDIKRLVDD---SDLQT-CFCVFDV 374
Query: 345 LYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVD 404
L + + + LK+R+E L+ V P KGR+ H+ + E +
Sbjct: 375 LLINNQKFGKEPLKKRYESLETVFSPIKGRI-----------HLVSKSE------GRTMQ 417
Query: 405 EVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIXXXXX 463
EV E I+NR+EGI++KD S ++P R WLK+KPEY+ D LD+LI+
Sbjct: 418 EVVNSLNEAIDNREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWG 477
Query: 464 XXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYP 523
++ FL A+AE P+P P F + CR+G+G + +EL + KL +++ Y
Sbjct: 478 KGRRSGMLSHFLCAVAEVPSPGEKPTVFHTLCRIGSGYTLKELYDLGVKLAKHWKVYN-- 535
Query: 524 KRAPPS 529
K PP+
Sbjct: 536 KNNPPA 541
Score = 521 (188.5 bits), Expect = 9.8e-47, P = 9.8e-47
Identities = 143/517 (27%), Positives = 240/517 (46%)
Query: 403 VDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIXXX 461
+ EV E I+NR+EGI++KD S ++P R WLK+KPEY+ D LD+LI+
Sbjct: 416 MQEVVNSLNEAIDNREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGY 475
Query: 462 XXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYE 521
++ FL A+AE P+P P F + CR+G+G + +EL + KL +++ Y
Sbjct: 476 WGKGRRSGMLSHFLCAVAEVPSPGEKPTVFHTLCRIGSGYTLKELYDLGVKLAKHWKVYN 535
Query: 522 YPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDR 581
K PP+ E+P+V+IE P S+IL + + + SE++ +LRFPRI+R
Sbjct: 536 --KNNPPAAILC---GTEKPEVYIE-PRNSVILQVKA-AEIVTSEMYKTDCTLRFPRIER 588
Query: 582 VRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKP-KQFRSSRKGEKKNVSIVP 640
+R DK WH C+ + + ++G + + + +D+P K+ R KK + ++
Sbjct: 589 IREDKEWHQCMTLDDLNQFRSKASG--KLASRHLNIHEDQPEKKKRKIVAKPKKTIGVI- 645
Query: 641 SHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCV 700
HF D+S + ET +F ++ F +N +S L K V GG N T+C
Sbjct: 646 DHFKSQDLSKVAKETDMFEEVEFCVINGDDEHSKAELEKGVARCGGIVVQNPGKD-TYCA 704
Query: 701 --AADNKGLKYEAAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEEVDE 758
A N +K + + DV+ +W+L+C + +H+S S+++ +E D+
Sbjct: 705 IAAVQNMRVKNLISSDQHDVVWATWLLECLENKQVIPWQPRHMIHMSPSTREHFAKEYDQ 764
Query: 759 FSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKW-----SCFHGCCIYFYH 813
+ D Y+ D ++ ++ + +E K++ + + ++ W S F YF
Sbjct: 765 YGDSYYVDTSEQQLRDVIERISSAE-VKSLSVAQIE--AENAWDDLPTSIFRPYSAYFDR 821
Query: 814 STEPLSPDWEVXXXXXXXXXXXEISFHGGKVCNNLANA-THVVVLSVLGYDVNFNSLTES 872
+ P V E FHGGKV L +HVVV + +
Sbjct: 822 CADIGDPK-SVICGTCLDTRALEFRFHGGKVVEKLKEGISHVVV-------EDMKRALDL 873
Query: 873 FTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEY 909
T R H KK +V W+ D + +E +Y
Sbjct: 874 KTLRRLHA---KKFKIVHESWVTDSIKAGHVKDEIDY 907
>UNIPROTKB|Q7SB49 [details] [associations]
symbol:lig-4 "DNA ligase 4" species:367110 "Neurospora
crassa OR74A" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IBA] [GO:0032807 "DNA ligase IV complex" evidence=IBA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
Pfam:PF00533 GO:GO:0005524 GO:GO:0005694 GO:GO:0046872
GO:GO:0003677 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0006303 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 KO:K10777 OMA:HMCPSTK GO:GO:0032807
OrthoDB:EOG41K2MD HOGENOM:HOG000176213 EMBL:AB261106
EMBL:AABX02000025 RefSeq:XP_962868.1 UniGene:Ncr.24770
ProteinModelPortal:Q7SB49 STRING:Q7SB49
EnsemblFungi:EFNCRT00000006055 GeneID:3879007 KEGG:ncr:NCU06264
Uniprot:Q7SB49
Length = 1046
Score = 388 (141.6 bits), Expect = 3.6e-62, Sum P(5) = 3.6e-62
Identities = 96/292 (32%), Positives = 162/292 (55%)
Query: 27 KKRSKFRKFLDTYCDSV--DYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDS 84
++R +F+ + V D++ A+RLILP DR+RG YGLKE+ + L+ + + ++S
Sbjct: 87 QRRHIIERFMSRWRSEVGNDFYPAMRLILPDKDRDRGVYGLKENTIGKLLVKVMKIDRNS 146
Query: 85 ADAVRLINWR----KGGAAPNAGNFPMVAAEVLQRRQGMIS-GGLTIKELNDLLDRLASS 139
D L++W+ + G + + G+F EV+ +R G LTI ++N LLDRLA++
Sbjct: 147 EDGYNLMHWKLPGGQSGVSRSVGDFAGRCLEVVSKRAMRAQPGDLTIADVNVLLDRLAAA 206
Query: 140 ENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDL 199
AE++ + ++ NA+EM W++ IILKD+++G +E++ + +HPDAE LF+V+ L
Sbjct: 207 SGEAEQLPIFEEFYRQMNAEEMMWLVRIILKDMRVGATERTFLNLWHPDAEALFSVSSSL 266
Query: 200 KLVCEKLKDRNQRHKRQD--IEVGKAVRPQLAMRIGDAHAAWRKL--------HGKEVVI 249
+ VC +L D R ++Q+ I++ + +PQLA W KL E I
Sbjct: 267 RRVCWELFDPEFRLEQQETGIKLMQCFQPQLAQF--QMTTTWEKLVKNLGVTEENPEFWI 324
Query: 250 ECKFDGDRIQIHK-------NGSEIHYFSRSFLDHSE-YGHAMSKIIEQNVL 293
E K DG+R+Q+H G ++SR D++ YG ++ EQ+ L
Sbjct: 325 EEKLDGERMQMHMIEDDTVPGGFRFAFWSRKAKDYTYLYGESLGD--EQSAL 374
Score = 232 (86.7 bits), Expect = 3.6e-62, Sum P(5) = 3.6e-62
Identities = 58/232 (25%), Positives = 117/232 (50%)
Query: 400 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLII 458
A + D +E + + EG+VLK+ S++ R+ W+K+KPEY+ G LD +++
Sbjct: 475 ATSPDAIEPLLRRVVAEASEGLVLKNPRSRYSLNSRNNDWIKVKPEYMSDFGESLDCVVV 534
Query: 459 XXXXXXXXXXXEVAQFL--VALAER--PAPDTYPRRFISFCRVGTGLSDEELDAVVTKLK 514
++ FL V +++ + + + +SF +VG G E+ + +
Sbjct: 535 GGYFGSGRRGGTLSSFLCGVRVSQNFIKSGNASAEKCLSFVKVGGGFKAEDYAEIRHHTE 594
Query: 515 PYFRKYEYPKRAPPSFYQVTNNSK---ERPDVWIESPEKSIILSITSDIRTIRSEVFSAP 571
++ ++ P P + ++ K E+PDVWI P S+++S+ + T +S+ F+
Sbjct: 595 GKWQDWD-PSSPPTEYIELGGGEKLQYEKPDVWIR-PSDSVVISVKAASIT-QSDQFAMG 651
Query: 572 YSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPK 623
++LRFPR ++R D+ W LD+ F E++ S ++ ++ +++ K K
Sbjct: 652 WTLRFPRFRKLRLDRAWDSALDMDEF-EVLRSKIKDQEQERKKMEMENRKRK 702
Score = 108 (43.1 bits), Expect = 3.6e-62, Sum P(5) = 3.6e-62
Identities = 26/85 (30%), Positives = 40/85 (47%)
Query: 294 VDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVI 353
V ILDGEM+ WD +++ FG+ + A + S Y FD+L + D +
Sbjct: 386 VRNLILDGEMITWDIDIDKMVPFGTLKTAALEQQKNPSKAGPRPLYRVFDILLLNDKPLT 445
Query: 354 HQSLKERHELLQKVVKPSKGRLETL 378
+L +R L++ V RLE L
Sbjct: 446 EYTLNDRRRALERAVVGVHRRLEIL 470
Score = 70 (29.7 bits), Expect = 3.6e-62, Sum P(5) = 3.6e-62
Identities = 24/77 (31%), Positives = 35/77 (45%)
Query: 837 ISFHGGKVCNNLANATHVVVLSV-LGYDVNFNSLTESFTAREKHLL---WNKKLHVVRSQ 892
I F GKV + L ATHVVV++ LG + R K L + +V+ +
Sbjct: 967 IRFGNGKVVDELETATHVVVVTAPLGESSKKEEREIAAELRYKISLREMGSPMPRIVKGE 1026
Query: 893 WLEDCLAKEQKSEEYEY 909
W+ED + +E EY
Sbjct: 1027 WVEDSWKEGTVVDEEEY 1043
Score = 66 (28.3 bits), Expect = 3.6e-62, Sum P(5) = 3.6e-62
Identities = 26/100 (26%), Positives = 43/100 (43%)
Query: 702 ADNKGLKYEAAKRRG---DVIHYSWVLDCC----SXXXXXXXXXXYYL-----HLSDSSK 749
AD +K + ++ D+I W+ DC Y L HL S
Sbjct: 794 ADKNVIKVASLRKANPEMDIIRPKWIFDCLVQPMPFTKQKENKKGYLLPFEPTHLFHSGS 853
Query: 750 KKLQEE----VDEFSDLYFWDL-DLADIKQLLSNVDRSED 784
++ EE VD+F D Y DL D+ ++K ++ ++ S+D
Sbjct: 854 EETSEEAEQAVDKFGDSYAGDLADINELKAIMEGME-SDD 892
Score = 51 (23.0 bits), Expect = 9.2e-58, Sum P(4) = 9.2e-58
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 883 NKKLHVVRSQWLEDCLAK-----EQKSEEYEYSL--KPTGMQES 919
N ++ ++R +W+ DCL + +QK + Y L +PT + S
Sbjct: 808 NPEMDIIRPKWIFDCLVQPMPFTKQKENKKGYLLPFEPTHLFHS 851
Score = 48 (22.0 bits), Expect = 2.5e-36, Sum P(4) = 2.5e-36
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 345 LYVG-DTSVIHQSLKERH---ELLQKVVKPSKGRLETLVPDH 382
L+ G D V+ SLK L+K++K GR+ V DH
Sbjct: 742 LFEGLDFCVLSDSLKPNKMTKPALEKLIKDHGGRIHQQVMDH 783
>SGD|S000005531 [details] [associations]
symbol:DNL4 "DNA ligase required for nonhomologous
end-joining (NHEJ)" species:4932 "Saccharomyces cerevisiae"
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IMP;IDA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0001302 "replicative cell aging" evidence=IGI]
[GO:0032807 "DNA ligase IV complex" evidence=IPI] [GO:0005634
"nucleus" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IPI] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;IMP;IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0051103 "DNA ligation involved
in DNA repair" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=IEA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0051301 "cell division" evidence=IEA] [GO:0016874
"ligase activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
SGD:S000005531 Pfam:PF00533 GO:GO:0005524 EMBL:BK006948
GO:GO:0051301 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0001302 GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:U43491 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006303 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574 BRENDA:6.5.1.1
KO:K10777 GO:GO:0032807 HOGENOM:HOG000093622 OMA:CSIANGI
OrthoDB:EOG41K2MD GeneTree:ENSGT00700000104500 EMBL:Z74913
PIR:S66870 RefSeq:NP_014647.1 PDB:1Z56 PDBsum:1Z56
ProteinModelPortal:Q08387 SMR:Q08387 DIP:DIP-5801N IntAct:Q08387
MINT:MINT-672762 STRING:Q08387 EnsemblFungi:YOR005C GeneID:854166
KEGG:sce:YOR005C CYGD:YOR005c EvolutionaryTrace:Q08387
NextBio:975950 Genevestigator:Q08387 GermOnline:YOR005C
Uniprot:Q08387
Length = 944
Score = 563 (203.2 bits), Expect = 2.6e-51, P = 2.6e-51
Identities = 223/828 (26%), Positives = 382/828 (46%)
Query: 19 IQKTKPAAKKRS-KFRKFLDTYCD----SV--DYFSALRLILPSLDRERGSYGLKESVLA 71
I T K RS K+ + + + + +V + + AL L LP R+R Y +K+ VL
Sbjct: 36 INGTAGTGKSRSFKYYEIISNFVEMWRKTVGNNIYPALVLALPY--RDRRIYNIKDYVLI 93
Query: 72 NCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFP-MVAAEVLQRRQGMISGGLTIKELN 130
+ L + K+SA RL +W++ GN ++ E+ +RR S +TI +N
Sbjct: 94 RTICSYLKLPKNSATEQRLKDWKQ--RVGKGGNLSSLLVEEIAKRRAEPSSKAITIDNVN 151
Query: 131 DLLDRLAS---SENRAEKISVLST----LIKKTNAQEMKWIIMIILKDLKLGISEKSIFH 183
LD L+ + R K V S ++ + E+K+ I+LK+ +G E + +
Sbjct: 152 HYLDSLSGDRFASGRGFKSLVKSKPFLHCVENMSFVELKYFFDIVLKNRVIGGQEHKLLN 211
Query: 184 EFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQD--IEVGKAVRPQLAMRIGDAHAA-WR 240
+HPDA+D +V DLK+V KL D R K D I+VG A PQLA ++ ++ R
Sbjct: 212 CWHPDAQDYLSVISDLKVVTSKLYDPKVRLKDDDLSIKVGFAFAPQLAKKVNLSYEKICR 271
Query: 241 KLHGKEVVIECKFDGDRIQIH-KN-GSEIHYFSRSFLDHSE-YGHAMSK-IIEQNVL--- 293
LH + ++E K DG+RIQ+H N G I +FSR +D++ YG ++S I Q++
Sbjct: 272 TLHD-DFLVEEKMDGERIQVHYMNYGESIKFFSRRGIDYTYLYGASLSSGTISQHLRFTD 330
Query: 294 -VDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAAR--DGLSS-DRQVLCYFAFDVLYVGD 349
V C+LDGEM+ +D FG + AK A + +++ D L Y FD+LY+
Sbjct: 331 SVKECVLDGEMVTFDAKRRVILPFGLVKGSAKEALSFNSINNVDFHPL-YMVFDLLYLNG 389
Query: 350 TSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKF 409
TS+ L +R + L ++ P K +E + + C+ V+ ++K
Sbjct: 390 TSLTPLPLHQRKQYLNSILSPLKNIVEIV------------RSSRCYG-----VESIKKS 432
Query: 410 FKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLIIXXXXXXXXXX 468
+ I EG+VLK S + R+ W+K+KPEY+ G +LD+++I
Sbjct: 433 LEVAISLGSEGVVLKYYNSSYNVASRNNNWIKVKPEYLEEFGENLDLIVIGRDSGKKDSF 492
Query: 469 X------EVAQF---------LV--ALAERPAPDTYPR--RFISFCRVGTGLSDEELDAV 509
+ ++ +V + E+ ++ R + +SFC + G+S EE +
Sbjct: 493 MLGLLVLDEEEYKKHQGDSSEIVDHSSQEKHIQNSRRRVKKILSFCSIANGISQEEFKEI 552
Query: 510 VTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITS---DIRTIRSE 566
K + ++++ + APP+ + + P WI+ P +SI+L I S D +
Sbjct: 553 DRKTRGHWKRTS--EVAPPA--SILEFGSKIPAEWID-PSESIVLEIKSRSLDNTETNMQ 607
Query: 567 VFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFR 626
++ +L R+RYDK W DC + E + T + Y Q ++ Q
Sbjct: 608 KYATNCTLYGGYCKRIRYDKEWTDCYTLNDLYE-----SRTVKSNPSY---QAER-SQLG 658
Query: 627 SSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDMVFY----FVNVPPAYSLD--SLHKM 680
RK ++K V I S I ++IF+ ++FY +V + L K
Sbjct: 659 LIRK-KRKRVLISDSFHQNRKQLPI---SNIFAGLLFYVLSDYVTEDTGIRITRAELEKT 714
Query: 681 VVENGGTFSMNL---NNSVTHCVAADNKGL-KYEAAKRRG-DVIHYSWVLDCCSXXXXXX 735
+VE+GG N+ +S+ K + +A RG D++H +WVLDC +
Sbjct: 715 IVEHGGKLIYNVILKRHSIGDVRLISCKTTTECKALIDRGYDILHPNWVLDCIAYKRLIL 774
Query: 736 XXXXYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSE 783
Y ++S + ++ VD D + + D+++ K LS++ +S+
Sbjct: 775 IEPNYCFNVSQKMRAVAEKRVDCLGDSF--ENDISETK--LSSLYKSQ 818
>UNIPROTKB|Q75CA4 [details] [associations]
symbol:LIG4 "DNA ligase 4" species:284811 "Ashbya gossypii
ATCC 10895" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IBA] [GO:0032807 "DNA ligase IV complex" evidence=IBA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
Pfam:PF00533 GO:GO:0005524 GO:GO:0005694 GO:GO:0046872
GO:GO:0003677 GO:GO:0001302 GO:GO:0000790 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006303 GO:GO:0006289
EMBL:AE016816 GenomeReviews:AE016816_GR GO:GO:0006273
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574
KO:K10777 GO:GO:0032807 RefSeq:NP_983411.1 HSSP:Q08387
ProteinModelPortal:Q75CA4 STRING:Q75CA4 EnsemblFungi:AAS51235
GeneID:4619536 KEGG:ago:AGOS_ACR008W HOGENOM:HOG000093622
OMA:CSIANGI OrthoDB:EOG41K2MD PhylomeDB:Q75CA4 Uniprot:Q75CA4
Length = 981
Score = 554 (200.1 bits), Expect = 3.1e-50, P = 3.1e-50
Identities = 231/931 (24%), Positives = 407/931 (43%)
Query: 44 DYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAG 103
D + AL L LP DR SY +K+ L L + + ++S RL++W++ AP
Sbjct: 107 DIYPALVLSLPYNDRR--SYRVKDVTLVKALCKHMKLPRNSETERRLLHWKQN--APRGV 162
Query: 104 NFPMVAAEVLQ--RRQGMISGGLTIKELNDLLDRLASSEN--RAEKISVLST-----LIK 154
E LQ RR+ ++ ++I E+N +LD+L N + IS+ + ++
Sbjct: 163 KLSTFCVEELQKRRREPVVPKRMSIDEVNGMLDKLEHESNVGKWSYISLAESPAFNYCLE 222
Query: 155 KTNAQEMKWIIMIILK-DLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRH 213
+ E+++ I+LK + G+ E + +HPDAE F V DL++V L D N+R
Sbjct: 223 HMSYVELRFFFDIVLKVPIVSGL-ESLLLSCWHPDAESYFKVVSDLRIVAHTLYDPNERL 281
Query: 214 KRQDIEV--GKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIH--KNGSEIHY 269
++ D+ V G A P +A R+ + G + +E K DGDRIQ+H G+ I Y
Sbjct: 282 EKNDLSVRIGYAFAPHMAQRVKIPYEKVSTKLGNDFYVEEKMDGDRIQVHYMDYGNSIAY 341
Query: 270 FSRSFLDHSE-YGHAMSKIIEQNVL-----VDRCILDGEMLVWDTSLNRFAEFGSNQEIA 323
FSR+ ++++ YG SK N L V CILDGEM+ +D + FG + A
Sbjct: 342 FSRNGINYTYLYGENSSKGSISNHLKFVEGVKECILDGEMVSYDKEMQCILPFGLTKSGA 401
Query: 324 KAARD----GLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLV 379
+ G + Y FD+LY+ + +Q + +R E L+K++ PSK + L
Sbjct: 402 SHQVNFETTGHTEPTYRPLYAVFDLLYLNGQLLTNQDVVKRKEYLEKILIPSKNVVHLL- 460
Query: 380 PDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKW 439
G C + + + + + EGIVLK SK+ G R W
Sbjct: 461 -----------SGPRC-----SDAEAITAALGAAVAHGSEGIVLKKARSKYSVGKRDDSW 504
Query: 440 LKLKPEYIRA-GSDLDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTY----------- 487
+K+KPEY+ G ++D+++I A + +E+ P +Y
Sbjct: 505 IKIKPEYLENFGENMDLVVIGRDKGRKDSFI-CALAVTDDSEKNNPSSYESGSDSDSDSE 563
Query: 488 -----PR--RFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKER 540
P+ +FISFC + G+S+EE + + + + Y +R PP+ + V +K
Sbjct: 564 PIIVQPKIEKFISFCSIANGISNEEFKEIDRLTRGNW--FPYDERKPPTDW-VEFGTKT- 619
Query: 541 PDVWIESPEKSIILSITS---DIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSF 597
P WI+ P+ S++L + + D +S+++ +L R+R+DK W V +
Sbjct: 620 PREWID-PKNSVVLEVKARSIDNEESKSDLYKTGSTLYNAYCKRIRHDKNWSTASTVAEY 678
Query: 598 VELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSI 657
T ++ + Y + + +F R +K + H L D+ K +
Sbjct: 679 --------DTAREARSYFNVSQNA--KFGKDRSSPRKRRTF---H-LVGDIDVTKPSKAD 724
Query: 658 FSDMVFYFV-----NVPPAYSLDS--LHKMVVENGGTFSMNLNNSVT----HCVAA-DNK 705
F +++V ++ ++D+ + + VV GGT+ NL + + + D +
Sbjct: 725 FLKGYYFYVTSGYFDLQSKKNIDASEIGEAVVSCGGTYIHNLRIRASLDKLYILGCKDTR 784
Query: 706 GLKYEAAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEEVDEFSDLYFW 765
LK +R D+IH W++DC Y S+ K+ + + D++ + Y
Sbjct: 785 ELKM-LIERGYDIIHPEWLMDCVKYGTMLQIEPKYVYSASEELMKQARNQEDKYGESYQL 843
Query: 766 DLDLADIKQLLSN-VDR---SE-DPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSP 820
+ +K L + V+ SE + Y++ + W F+ Y YHS+
Sbjct: 844 PVTEDTLKALANKQVEEGYASEMGTDAVSEYERLLIFKG-W-LFYILDDYAYHSSWSDIV 901
Query: 821 DWEVXXXXXXXXXXXEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHL 880
W + GG+V N+L AT VV + ++ ++ + AR
Sbjct: 902 KWNIESC-------------GGEVTNDLELATIVVAVKDCFSQLSLQAVRNNIGARITGS 948
Query: 881 LWNKKL-HVVRSQWLEDCLAKEQKSEEYEYS 910
+ + +V S+W+E C+ + +E EY+
Sbjct: 949 NDVQPIPKIVTSEWVEACMEAQYLVDEDEYA 979
>FB|FBgn0030506 [details] [associations]
symbol:Lig4 "Ligase4" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS] [GO:0003910 "DNA ligase (ATP)
activity" evidence=ISS;IBA] [GO:0010212 "response to ionizing
radiation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IGI]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IMP] [GO:0006273 "lagging strand elongation"
evidence=IBA] [GO:0032807 "DNA ligase IV complex" evidence=IBA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0005694 GO:GO:0003677 GO:GO:0010212 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0000723 GO:GO:0006303
GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793 GO:GO:0003910
TIGRFAMs:TIGR00574 GO:GO:0032807 EMBL:AY119169
ProteinModelPortal:Q8MS06 SMR:Q8MS06 STRING:Q8MS06 PaxDb:Q8MS06
PRIDE:Q8MS06 FlyBase:FBgn0030506 InParanoid:Q8MS06
OrthoDB:EOG4NS1T2 ArrayExpress:Q8MS06 Bgee:Q8MS06 Uniprot:Q8MS06
Length = 918
Score = 293 (108.2 bits), Expect = 4.5e-46, Sum P(2) = 4.5e-46
Identities = 104/399 (26%), Positives = 181/399 (45%)
Query: 402 NVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDR-SGKWLKLKPEYIRAG-SDLDVLIIX 459
+V E + F++ +++ EGIVLK GS+++PG R G W K K +YI+ ++ DVLII
Sbjct: 419 SVQEFNELFQQALDSHAEGIVLKKQGSRYQPGVRLGGGWYKDKADYIKGLITEFDVLIIG 478
Query: 460 XXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTK-LKPYFR 518
V FL+ + + PAP R F +G ++ + V+ LKP++
Sbjct: 479 AFYNRKRTF--VDSFLLGVLQ-PAPPGSSNRPEVFS-IGVVANNTKQRGVLNHTLKPHW- 533
Query: 519 KYEYPKRAPPSFYQVTNNSKER---PDVWIESPEKSIILSI-TSDIRTIRSEVFSAPYSL 574
++ PP ++ KER PD+WIE P+ S+IL + +D+ + F SL
Sbjct: 534 -HDVVNEPPPLWFHY--KPKERSGCPDLWIE-PQNSVILQVKAADLAP--NGAFFTRKSL 587
Query: 575 RFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQD--DKPKQFRSSRKGE 632
FPR + R DK W +C+ ++ F +L + K L+D K KQ R + E
Sbjct: 588 HFPRTEMKRDDKTWSECMTLKEFNDLCGGPLAIKKLNKRQLRLEDVTTKRKQMRMT-PSE 646
Query: 633 KKNVSIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPA-YSLDSLHKMVVENGGTFSMN 691
+ + + + + D S + +F + F ++ +S L ++ V+NGG N
Sbjct: 647 RSRLGLAV-YEKRYDASTSASTSKLFDGLSFCILSGSAGRHSKHQLQELAVKNGGCIVEN 705
Query: 692 L--NNSVTHCVAADNKGLKYEAA---KRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSD 746
N+ C+A D L R D++ W+L C + ++
Sbjct: 706 PLPNDPKCFCIAGDETFLVKRLILQQPRTCDIVRMEWLLRVCQKQELELKPRDL-IAATE 764
Query: 747 SSKKKLQEEVDEFSDLYFWDL-DLADIKQLLSNVDRSED 784
++ L E D D Y D+ ++ +++ LL ++ + D
Sbjct: 765 PLQQDLAECFDRHGDSYTKDIANVEELQDLLQGIELTAD 803
Score = 283 (104.7 bits), Expect = 4.5e-46, Sum P(2) = 4.5e-46
Identities = 85/306 (27%), Positives = 148/306 (48%)
Query: 12 LVSLFNWIQKTKPAAKKRSKFRKFLDTYC------------------DSVD-YFSALRLI 52
+ SLF I+ T+ A K + + +++C D ++S LRL+
Sbjct: 14 ICSLFEKIKATQKVANKEEVLKSYYESFCRHRESFRRQTGLNNDQPEDGASSFYSVLRLL 73
Query: 53 LPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEV 112
LP D R +YGL+ + L I L + DS+DA+RL + R G G+ V V
Sbjct: 74 LPGADTGRDTYGLQITALGRLYIRVLQLPTDSSDAIRLQH-RNGNMYRGYGD---VVYSV 129
Query: 113 LQRRQGMISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDL 172
L+ R L +KE++ +LD +A+ + ++ ++ ++ + +E KW+I ++LK L
Sbjct: 130 LKPRCFNPPSNLRLKEIHQMLDTIANEDTEVKQQQLIR-FTEQASPEEQKWLIRLLLKSL 188
Query: 173 KLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRN---QRHKRQD-------IEVGK 222
LGI E+ IF HP A+D++ DL VC L DR +D + +
Sbjct: 189 GLGIGEQKIFGVLHPKAQDIYQRCSDLGHVCNLLADRTTDLDASSSKDSKAAVKFVNLNS 248
Query: 223 AVRP--QLAMRIGDAHAA-WRKLHGKEVV-IECKFDGDRIQIHKNGSEIHYFSRSFLDHS 278
+RP Q+ + + ++L +V+ +E K DG+R Q+H + Y SR+ +D++
Sbjct: 249 VIRPFHQIRPMLCERFPGDIQELMQSDVLYLETKMDGERFQLHIDRGRFMYISRNGVDYT 308
Query: 279 E-YGHA 283
+GH+
Sbjct: 309 RNFGHS 314
Score = 174 (66.3 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 50/165 (30%), Positives = 84/165 (50%)
Query: 224 VRPQLAMRI-GDAHAAWRKLHGKEVV-IECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-Y 280
+RP L R GD ++L +V+ +E K DG+R Q+H + Y SR+ +D++ +
Sbjct: 256 IRPMLCERFPGDI----QELMQSDVLYLETKMDGERFQLHIDRGRFMYISRNGVDYTRNF 311
Query: 281 GHAMS------KIIEQNVL-VDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSD 333
GH+ K+ L ++ ILDGEM+VWDT+ RF E G N ++ +G
Sbjct: 312 GHSYDHGTLTPKLRGLLPLGLESIILDGEMMVWDTNKLRFREKGENTDVKSLKPEGSWQP 371
Query: 334 RQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETL 378
C+ +D+LY S++ + +R LQK++ G L+ +
Sbjct: 372 ----CFVVYDLLYFNGQSLLDHTYIQRAYKLQKLIVEQSGVLQLM 412
>UNIPROTKB|A8JIN2 [details] [associations]
symbol:DNL4 "DNA ligase IV" species:3055 "Chlamydomonas
reinhardtii" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IBA] [GO:0032807 "DNA ligase IV complex" evidence=IBA]
InterPro:IPR012308 InterPro:IPR012310 Pfam:PF01068 Pfam:PF04675
PROSITE:PS50160 GO:GO:0005524 GO:GO:0005694 GO:GO:0003677
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006303 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
GO:GO:0003910 GO:GO:0032807 EMBL:DS496207 RefSeq:XP_001690680.1
EnsemblPlants:EDO96255 GeneID:5716282 KEGG:cre:CHLREDRAFT_205955
BioCyc:CHLAMY:CHLREDRAFT_205955-MONOMER Uniprot:A8JIN2
Length = 831
Score = 381 (139.2 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 127/418 (30%), Positives = 202/418 (48%)
Query: 66 KESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMISGGLT 125
+E LA+ L+ ALG S+ A AV+L+ AE L G+T
Sbjct: 12 QEKRLASLLVLALGASERDARAVKLL-------------LDKYCAESLPPDLA----GMT 54
Query: 126 IKELNDLLDRLASSENRAEK--ISVLSTLIKKTNAQEMKWIIMIILK-DLKLGISEKSIF 182
+ ELN LD LA+ RAE ++L L+++ +W++ ++L+ ++ +G+SE+S+
Sbjct: 55 LGELNAQLDALAAVAARAEASAAALLRWLLRRCTPAAGRWLLCVLLRGEMPVGLSERSLL 114
Query: 183 HEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRI--GDAHAAWR 240
H DA + F+ C L+ V L +KR G V PQLA + G R
Sbjct: 115 GCLHRDAWEAFSSCCSLEEVAASLGPAGAVYKRTP---GLCVSPQLAAKPPPGGLEEVVR 171
Query: 241 KLHGKEVVIECKFDGDRIQIHKNGSE--------------IHYFSRSFLDHSEYGHAMSK 286
+ G+ ++ KFDG RIQ G+ +HY+SR FLDH +
Sbjct: 172 RHSGRPFRVDTKFDGWRIQPAAAGAAGSAAGAAGAAPAPVVHYYSRRFLDHGP--RSGFN 229
Query: 287 IIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQV-----LCYFA 341
+++ + +LDGEMLVW+ + FG AA G + + V + Y
Sbjct: 230 VLDG--APPQVVLDGEMLVWNKDRRAWEPFGCLAAAVHAAAAGWAPEELVKGWLEVVYVV 287
Query: 342 FDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAH 401
+D+LY DTS +H L+ER ELL + + P GR L D L+S W +
Sbjct: 288 YDILYCSDTSTLHMPLQERQELLAQALMP--GR--PLQQDGRLHS---------W--LCS 332
Query: 402 NVDEVEKFF-KETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLII 458
NV+++ + ++T E R+EG+V+K L + + P RS W+KLKP+Y+ G + D +++
Sbjct: 333 NVEQLRRLHDQQTREQREEGVVIKSLTAPYRPAARSESWVKLKPDYLTLG-EFDCVVL 389
Score = 76 (31.8 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 556 ITSDIRTIRSEVFSAPYSLRFPRIDRVRYDK 586
+ +D+R S VF+A +LRFPRI R+R D+
Sbjct: 501 VNADVRLHASHVFAAGCTLRFPRITRLREDR 531
Score = 40 (19.1 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 888 VVRSQWLEDC 897
++R WLEDC
Sbjct: 755 LLRPAWLEDC 764
>UNIPROTKB|E2RNT6 [details] [associations]
symbol:LIG3 "DNA ligase" species:9615 "Canis lupus
familiaris" [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
Gene3D:3.30.1740.10 GeneTree:ENSGT00700000104500 EMBL:AAEX03006627
Ensembl:ENSCAFT00000029122 Uniprot:E2RNT6
Length = 938
Score = 295 (108.9 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
Identities = 102/344 (29%), Positives = 163/344 (47%)
Query: 124 LTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFH 183
LTI+E++ L +L+ E+ L + + A ++K II +I DLK+ K +
Sbjct: 285 LTIQEVDKFLLQLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLD 344
Query: 184 EFHPDAEDLFNVTCDLKLVCEK-LKDRNQRHK----RQDIEVGKA----VRPQLAMRIGD 234
P+A + F + +L+ V E+ L++ + K R+ + V + V+P LA
Sbjct: 345 ALDPNAYEAFKASRNLQDVVERVLRNEQEVEKEPGQRRALSVQASLMTPVQPMLAEACKS 404
Query: 235 AHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSF---LDHSEYGHAMSKIIEQN 291
A +K + E K+DG+R+Q+HKNG YFSRS L H + H I +
Sbjct: 405 IEHAMKKCPNG-MFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPH-KVAHFKDYIPQAF 462
Query: 292 VLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTS 351
ILD E+L+ DT + FG+ KAA D V C F FD +Y D S
Sbjct: 463 PGGHSMILDSEVLLIDTKTGKPLPFGTLGVHKKAA----FQDANV-CLFVFDCIYFNDVS 517
Query: 352 VIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFK 411
++ + L ER + L +E +P+ + S ++ Q LV D + + +
Sbjct: 518 LMDRPLSERRKFLHD------NMVE--IPNRIMFSEMK-QVTKASDLV----DMINRVIR 564
Query: 412 ETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDV 455
E +E G+VLKD+ +EPG R WLK+K +Y+ G+ D+
Sbjct: 565 EGLE----GLVLKDVKGTYEPGKRH--WLKVKKDYLNEGAMADM 602
Score = 160 (61.4 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
Identities = 64/241 (26%), Positives = 105/241 (43%)
Query: 403 VDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGS--DL-DVLIIX 459
VD + + +E +E G+VLKD+ +EPG R WLK+K +Y+ G+ D+ D++++
Sbjct: 556 VDMINRVIREGLE----GLVLKDVKGTYEPGKRH--WLKVKKDYLNEGAMADMADLVVLG 609
Query: 460 XXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRK 519
++ FL+ + P + +C V T S DA + +L+
Sbjct: 610 AFYGQGSKGGMMSIFLMGCYD---PSSQ-----KWCTV-TKCSGGHDDATLARLQKELDM 660
Query: 520 YEYPKRAP--PSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAP-YSLRF 576
+ K P++ ++ N PD + P+K+ + IT RSE +A S+RF
Sbjct: 661 VKISKDPSKIPNWLKI--NKIYYPDFIVPDPKKAAVWEITG-AEFSRSEAHTADGISIRF 717
Query: 577 PRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNV 636
PR R+R DK W ++ EL S G ++ SS GE V
Sbjct: 718 PRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFAVAAG--EEGSSTTGGSSSGGENGGV 775
Query: 637 S 637
S
Sbjct: 776 S 776
>UNIPROTKB|J9P597 [details] [associations]
symbol:LIG3 "DNA ligase" species:9615 "Canis lupus
familiaris" [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 OMA:WSETDLL
Gene3D:3.30.1740.10 GeneTree:ENSGT00700000104500 EMBL:AAEX03006627
Ensembl:ENSCAFT00000048097 Uniprot:J9P597
Length = 957
Score = 295 (108.9 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 102/344 (29%), Positives = 163/344 (47%)
Query: 124 LTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFH 183
LTI+E++ L +L+ E+ L + + A ++K II +I DLK+ K +
Sbjct: 339 LTIQEVDKFLLQLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLD 398
Query: 184 EFHPDAEDLFNVTCDLKLVCEK-LKDRNQRHK----RQDIEVGKA----VRPQLAMRIGD 234
P+A + F + +L+ V E+ L++ + K R+ + V + V+P LA
Sbjct: 399 ALDPNAYEAFKASRNLQDVVERVLRNEQEVEKEPGQRRALSVQASLMTPVQPMLAEACKS 458
Query: 235 AHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSF---LDHSEYGHAMSKIIEQN 291
A +K + E K+DG+R+Q+HKNG YFSRS L H + H I +
Sbjct: 459 IEHAMKKCPNG-MFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPH-KVAHFKDYIPQAF 516
Query: 292 VLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTS 351
ILD E+L+ DT + FG+ KAA D V C F FD +Y D S
Sbjct: 517 PGGHSMILDSEVLLIDTKTGKPLPFGTLGVHKKAA----FQDANV-CLFVFDCIYFNDVS 571
Query: 352 VIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFK 411
++ + L ER + L +E +P+ + S ++ Q LV D + + +
Sbjct: 572 LMDRPLSERRKFLHD------NMVE--IPNRIMFSEMK-QVTKASDLV----DMINRVIR 618
Query: 412 ETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDV 455
E +E G+VLKD+ +EPG R WLK+K +Y+ G+ D+
Sbjct: 619 EGLE----GLVLKDVKGTYEPGKRH--WLKVKKDYLNEGAMADM 656
Score = 160 (61.4 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 64/241 (26%), Positives = 105/241 (43%)
Query: 403 VDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGS--DL-DVLIIX 459
VD + + +E +E G+VLKD+ +EPG R WLK+K +Y+ G+ D+ D++++
Sbjct: 610 VDMINRVIREGLE----GLVLKDVKGTYEPGKRH--WLKVKKDYLNEGAMADMADLVVLG 663
Query: 460 XXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRK 519
++ FL+ + P + +C V T S DA + +L+
Sbjct: 664 AFYGQGSKGGMMSIFLMGCYD---PSSQ-----KWCTV-TKCSGGHDDATLARLQKELDM 714
Query: 520 YEYPKRAP--PSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAP-YSLRF 576
+ K P++ ++ N PD + P+K+ + IT RSE +A S+RF
Sbjct: 715 VKISKDPSKIPNWLKI--NKIYYPDFIVPDPKKAAVWEITG-AEFSRSEAHTADGISIRF 771
Query: 577 PRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNV 636
PR R+R DK W ++ EL S G ++ SS GE V
Sbjct: 772 PRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFAVAAG--EEGSSTTGGSSSGGENGGV 829
Query: 637 S 637
S
Sbjct: 830 S 830
Score = 41 (19.5 bits), Expect = 7.2e-21, Sum P(2) = 7.2e-21
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 427 GSKWEPGDRSGKWLKLKPEYIRAG 450
G P DR G L KP ++ G
Sbjct: 843 GRPSSPNDRGGHKLIAKPSPVKVG 866
>UNIPROTKB|F1P394 [details] [associations]
symbol:LIG3 "DNA ligase" species:9031 "Gallus gallus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0003910 "DNA ligase (ATP)
activity" evidence=IEA] [GO:0000795 "synaptonemal complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0043504 "mitochondrial DNA repair" evidence=IEA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0008270
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OMA:WSETDLL Gene3D:3.30.1740.10
GeneTree:ENSGT00700000104500 EMBL:AADN02025943 IPI:IPI00586176
Ensembl:ENSGALT00000003599 Uniprot:F1P394
Length = 900
Score = 298 (110.0 bits), Expect = 1.1e-32, Sum P(2) = 1.1e-32
Identities = 101/343 (29%), Positives = 161/343 (46%)
Query: 124 LTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFH 183
LTI+E+++ L +L+ ++ SVL + ++ ++K II +I DLK+ K +
Sbjct: 283 LTIQEVDEFLIQLSKLTKEDDQQSVLQDITRRCTGNDLKCIIRLIKHDLKMNAGAKHVLD 342
Query: 184 EFHPDAEDLFNVTCDLKLVCEK-LKDRNQRHK----RQDIEVGKA----VRPQLAMRIGD 234
P+A + F + +L+ V E+ L+++ K ++ + V + V+P LA
Sbjct: 343 ALDPNAYEAFKASRNLQDVVERVLRNQQDAEKTPGVKRTLSVQASLMTPVQPMLAEACKS 402
Query: 235 AHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSF---LDHSEYGHAMSKIIEQN 291
A +K + E K+DG+R+Q+HKNG YFSRS L H + H I +
Sbjct: 403 IEYAMKKCPNG-MYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPH-KVAHFKDFIPQAF 460
Query: 292 VLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTS 351
ILD E+L+ D + FGS KAA D V C F FD +Y D S
Sbjct: 461 PGGHSMILDSEVLLIDNKTGKPLPFGSLGVHKKAA----FQDANV-CLFVFDCIYFNDIS 515
Query: 352 VIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFK 411
++ + L+ER + L + + PD L R + S + D V +
Sbjct: 516 LMDRPLRERRKFLHD-------NMVEIPPDPVLGDEARHK-----SFRSGRYDHV---IR 560
Query: 412 ETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLD 454
E +E G+VLKD+ +EPG R WLK+K +Y+ G+ D
Sbjct: 561 EGLE----GLVLKDIKGNYEPGKRH--WLKVKKDYLNEGAMAD 597
Score = 150 (57.9 bits), Expect = 1.1e-32, Sum P(2) = 1.1e-32
Identities = 50/190 (26%), Positives = 89/190 (46%)
Query: 419 EGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGS---DLDVLIIXXXXXXXXXXXEVAQFL 475
EG+VLKD+ +EPG R WLK+K +Y+ G+ D++++ ++ FL
Sbjct: 564 EGLVLKDIKGNYEPGKRH--WLKVKKDYLNEGAMADTADLVVLGAFYGKGSKGGMMSIFL 621
Query: 476 VALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTN 535
+ + P + ++ + + G D L + T+L + + P + P S+ ++
Sbjct: 622 MGCYD---PKS--EKWCTVTKCAGGHDDATLARLQTELD-MVKISKDPSKIP-SWLKI-- 672
Query: 536 NSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAP-YSLRFPRIDRVRYDKPWHDCLDV 594
N PD + P+K+ + IT ++E +A S+RFPR R+R DK W ++
Sbjct: 673 NKIYYPDFIVPDPKKAPVWEITG-AEFSKAEAHTADGISIRFPRCTRIRDDKDWKTATNL 731
Query: 595 QSFVELVHSS 604
EL S
Sbjct: 732 PQLKELYQLS 741
>CGD|CAL0001558 [details] [associations]
symbol:LIG4 species:5476 "Candida albicans" [GO:0003909 "DNA
ligase activity" evidence=IGI;ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0009405 "pathogenesis" evidence=IGI;IMP]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:0032807 "DNA ligase IV complex"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0030447 "filamentous growth" evidence=IMP] [GO:0001302
"replicative cell aging" evidence=IEA] [GO:0006303 "double-strand
break repair via nonhomologous end joining" evidence=IEA]
[GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 CGD:CAL0001558
Pfam:PF00533 GO:GO:0005524 GO:GO:0005634 GO:GO:0009405
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0044182 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574 KO:K10777
EMBL:X95001 EMBL:AACQ01000088 EMBL:AACQ01000087 RefSeq:XP_715274.1
RefSeq:XP_715339.1 ProteinModelPortal:P52496 STRING:P52496
GeneID:3642986 GeneID:3643043 KEGG:cal:CaO19.13220
KEGG:cal:CaO19.5798 GO:GO:0003909 Uniprot:P52496
Length = 928
Score = 276 (102.2 bits), Expect = 8.4e-32, Sum P(4) = 8.4e-32
Identities = 110/435 (25%), Positives = 192/435 (44%)
Query: 249 IECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGH-----AMSKIIEQNVL--VDRCILD 300
IE K DGDR+ +HK+G +FSR D+S YG A++K + + ILD
Sbjct: 301 IEEKMDGDRMLLHKDGDSFKFFSRRLKDYSYLYGESFQFGALTKFLAHAFAGNIQSVILD 360
Query: 301 GEMLVWDTSLNRFAEFGS--NQEIAKAARDGLSSDR--QVLCY---FAFDVLYVGDTSVI 353
GEM+ +D N FG+ + I ++ R + D+ Q Y FD+L++ +
Sbjct: 361 GEMVAYDYERNVILPFGTLKSSAIQESVRQFTTIDQYEQQTAYPFFLVFDILFLNGKDLT 420
Query: 354 HQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKET 413
+ L R +L ++++P R E L D L S + +++E+ +E
Sbjct: 421 NYPLFFRKNILNRILRPIPNRFEVL--DTRLGS---------------SSEDIERAIREV 463
Query: 414 IENRDEGIVLKDLGSKWE-PGDRSGKWLKLKPEYI-RAGSDLDVLIIXXXXXXXXXXXEV 471
+ +R EG+VLK++ SK+E G R+ W+K+KPEY+ + G +LD+++I
Sbjct: 464 VSSRCEGLVLKNVQSKYEIDGFRNPDWIKVKPEYLEKFGENLDLVVIGKSPAIKNS---- 519
Query: 472 AQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFY 531
++ L + D + SFC G+ EE D + + K + PP
Sbjct: 520 --YMCGL--KSVTDGV---YYSFCTCANGIEIEEFDKIERLTHGKWIKTDVAM--PPE-- 568
Query: 532 QVTNNSKERPDVWIESPEKSIILSITS-DIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHD 590
+ + P WI P S++L I + I T ++ +L ++R DK +
Sbjct: 569 SLIKFGTKIPTFWIH-PSDSLVLEIRARSIDTRAGTSYAVGSTLHNNHCRKIREDKSIDE 627
Query: 591 CLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNV-SIVPS--HFL-QT 646
C+ +Q + + + K + G + + + K +K V S + S FL +
Sbjct: 628 CVTLQEYTHIKANYINDLNKAQTALGKKREPVYSLDNESKLKKVKVESDLFSGIEFLIMS 687
Query: 647 DVSDIKGETSIFSDM 661
D + GE + +M
Sbjct: 688 DKREADGEVTTIEEM 702
Score = 174 (66.3 bits), Expect = 8.4e-32, Sum P(4) = 8.4e-32
Identities = 55/234 (23%), Positives = 109/234 (46%)
Query: 27 KKRSKFRKFLDTYCDSV--DYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDS 84
KK + F++T+ + D + + +LI P ++ Y +KE LA LI + K+S
Sbjct: 48 KKAFIIKTFINTFRTHIGNDIYPSAKLIFP--EKSGRIYFIKEVALARLLIKMYKIPKES 105
Query: 85 ADAVRLINWRKGGAAPNA--------GNFPMVAAEVLQRRQGMISG--GLTIKELNDLLD 134
D + L +W K + P+ A+ ++ +R+ ++ T+ ++N LD
Sbjct: 106 EDYITLHDWNKSYQRSRRFSIDEKKIRDLPLQASRIISKRRPIVDKLEEYTVPQINSSLD 165
Query: 135 RLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFN 194
+LA + +I +L L + E++W+I I+L L E+ F+ +HPD +F+
Sbjct: 166 QLALEKVSQGQIDILKPLFDNLSIPEVRWLIHILLNKSILTSMERFFFNTWHPDGYRVFS 225
Query: 195 VTCDLKLVCEKLKDRNQRHKRQDIEVGKAVR--PQLAMRIGDAHAAW-RKLHGK 245
+ DL+ + + + R + + + PQL+ R+ ++ +KL K
Sbjct: 226 ICNDLQKTLQFSTNPDLRLDPSQLAIHPCFKFKPQLSERLTTSYKTLVKKLQRK 279
Score = 42 (19.8 bits), Expect = 8.4e-32, Sum P(4) = 8.4e-32
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 745 SDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTI 788
++S KK++ E D FS + F L ++D ++ V E+ K +
Sbjct: 664 NESKLKKVKVESDLFSGIEF--LIMSDKREADGEVTTIEEMKAM 705
Score = 41 (19.5 bits), Expect = 8.4e-32, Sum P(4) = 8.4e-32
Identities = 12/61 (19%), Positives = 33/61 (54%)
Query: 840 HGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLA 899
+GGK+ N++ AT+ ++ + ++ +S ++L +K + +V+ W+ +C+
Sbjct: 709 YGGKIVNSVDLATNYQIMVITERELPVSS---------QYL--SKGIDLVKPIWIYECIK 757
Query: 900 K 900
+
Sbjct: 758 R 758
>UNIPROTKB|P52496 [details] [associations]
symbol:LIG4 "DNA ligase 4" species:237561 "Candida albicans
SC5314" [GO:0003909 "DNA ligase activity" evidence=IGI;ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0009405 "pathogenesis"
evidence=IGI;IMP] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
CGD:CAL0001558 Pfam:PF00533 GO:GO:0005524 GO:GO:0005634
GO:GO:0009405 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0044182
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574
KO:K10777 EMBL:X95001 EMBL:AACQ01000088 EMBL:AACQ01000087
RefSeq:XP_715274.1 RefSeq:XP_715339.1 ProteinModelPortal:P52496
STRING:P52496 GeneID:3642986 GeneID:3643043 KEGG:cal:CaO19.13220
KEGG:cal:CaO19.5798 GO:GO:0003909 Uniprot:P52496
Length = 928
Score = 276 (102.2 bits), Expect = 8.4e-32, Sum P(4) = 8.4e-32
Identities = 110/435 (25%), Positives = 192/435 (44%)
Query: 249 IECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGH-----AMSKIIEQNVL--VDRCILD 300
IE K DGDR+ +HK+G +FSR D+S YG A++K + + ILD
Sbjct: 301 IEEKMDGDRMLLHKDGDSFKFFSRRLKDYSYLYGESFQFGALTKFLAHAFAGNIQSVILD 360
Query: 301 GEMLVWDTSLNRFAEFGS--NQEIAKAARDGLSSDR--QVLCY---FAFDVLYVGDTSVI 353
GEM+ +D N FG+ + I ++ R + D+ Q Y FD+L++ +
Sbjct: 361 GEMVAYDYERNVILPFGTLKSSAIQESVRQFTTIDQYEQQTAYPFFLVFDILFLNGKDLT 420
Query: 354 HQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKET 413
+ L R +L ++++P R E L D L S + +++E+ +E
Sbjct: 421 NYPLFFRKNILNRILRPIPNRFEVL--DTRLGS---------------SSEDIERAIREV 463
Query: 414 IENRDEGIVLKDLGSKWE-PGDRSGKWLKLKPEYI-RAGSDLDVLIIXXXXXXXXXXXEV 471
+ +R EG+VLK++ SK+E G R+ W+K+KPEY+ + G +LD+++I
Sbjct: 464 VSSRCEGLVLKNVQSKYEIDGFRNPDWIKVKPEYLEKFGENLDLVVIGKSPAIKNS---- 519
Query: 472 AQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFY 531
++ L + D + SFC G+ EE D + + K + PP
Sbjct: 520 --YMCGL--KSVTDGV---YYSFCTCANGIEIEEFDKIERLTHGKWIKTDVAM--PPE-- 568
Query: 532 QVTNNSKERPDVWIESPEKSIILSITS-DIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHD 590
+ + P WI P S++L I + I T ++ +L ++R DK +
Sbjct: 569 SLIKFGTKIPTFWIH-PSDSLVLEIRARSIDTRAGTSYAVGSTLHNNHCRKIREDKSIDE 627
Query: 591 CLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNV-SIVPS--HFL-QT 646
C+ +Q + + + K + G + + + K +K V S + S FL +
Sbjct: 628 CVTLQEYTHIKANYINDLNKAQTALGKKREPVYSLDNESKLKKVKVESDLFSGIEFLIMS 687
Query: 647 DVSDIKGETSIFSDM 661
D + GE + +M
Sbjct: 688 DKREADGEVTTIEEM 702
Score = 174 (66.3 bits), Expect = 8.4e-32, Sum P(4) = 8.4e-32
Identities = 55/234 (23%), Positives = 109/234 (46%)
Query: 27 KKRSKFRKFLDTYCDSV--DYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDS 84
KK + F++T+ + D + + +LI P ++ Y +KE LA LI + K+S
Sbjct: 48 KKAFIIKTFINTFRTHIGNDIYPSAKLIFP--EKSGRIYFIKEVALARLLIKMYKIPKES 105
Query: 85 ADAVRLINWRKGGAAPNA--------GNFPMVAAEVLQRRQGMISG--GLTIKELNDLLD 134
D + L +W K + P+ A+ ++ +R+ ++ T+ ++N LD
Sbjct: 106 EDYITLHDWNKSYQRSRRFSIDEKKIRDLPLQASRIISKRRPIVDKLEEYTVPQINSSLD 165
Query: 135 RLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFN 194
+LA + +I +L L + E++W+I I+L L E+ F+ +HPD +F+
Sbjct: 166 QLALEKVSQGQIDILKPLFDNLSIPEVRWLIHILLNKSILTSMERFFFNTWHPDGYRVFS 225
Query: 195 VTCDLKLVCEKLKDRNQRHKRQDIEVGKAVR--PQLAMRIGDAHAAW-RKLHGK 245
+ DL+ + + + R + + + PQL+ R+ ++ +KL K
Sbjct: 226 ICNDLQKTLQFSTNPDLRLDPSQLAIHPCFKFKPQLSERLTTSYKTLVKKLQRK 279
Score = 42 (19.8 bits), Expect = 8.4e-32, Sum P(4) = 8.4e-32
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 745 SDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTI 788
++S KK++ E D FS + F L ++D ++ V E+ K +
Sbjct: 664 NESKLKKVKVESDLFSGIEF--LIMSDKREADGEVTTIEEMKAM 705
Score = 41 (19.5 bits), Expect = 8.4e-32, Sum P(4) = 8.4e-32
Identities = 12/61 (19%), Positives = 33/61 (54%)
Query: 840 HGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLA 899
+GGK+ N++ AT+ ++ + ++ +S ++L +K + +V+ W+ +C+
Sbjct: 709 YGGKIVNSVDLATNYQIMVITERELPVSS---------QYL--SKGIDLVKPIWIYECIK 757
Query: 900 K 900
+
Sbjct: 758 R 758
>UNIPROTKB|F1MQY1 [details] [associations]
symbol:LIG3 "DNA ligase" species:9913 "Bos taurus"
[GO:0045910 "negative regulation of DNA recombination"
evidence=IEA] [GO:0043504 "mitochondrial DNA repair" evidence=IEA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0000795 "synaptonemal complex" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0051103
"DNA ligation involved in DNA repair" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OMA:WSETDLL Gene3D:3.30.1740.10
GeneTree:ENSGT00700000104500 EMBL:DAAA02048465 IPI:IPI00905942
UniGene:Bt.25483 Ensembl:ENSBTAT00000024875 Uniprot:F1MQY1
Length = 943
Score = 286 (105.7 bits), Expect = 9.9e-32, Sum P(2) = 9.9e-32
Identities = 102/343 (29%), Positives = 161/343 (46%)
Query: 124 LTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFH 183
LTI+E+++ L RL+ E+ L + + A ++K II +I DLK+ K +
Sbjct: 374 LTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLD 433
Query: 184 EFHPDAEDLFNVTCDLKLVCEK-LKDRNQRHK----RQDIEVGKA----VRPQLAMRIGD 234
P+A + F + +L+ V E+ L++ + K R+ + V + V+P LA
Sbjct: 434 ALDPNAYEAFKASRNLQDVVERVLRNEQEVEKEPGQRRALSVQASLMTPVQPMLAEACKS 493
Query: 235 AHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSF---LDHSEYGHAMSKIIEQN 291
A +K + E K+DG+R+Q+HK G YFSRS L H + H I
Sbjct: 494 IEYAMKKCPNG-MFSEIKYDGERVQVHKKGDHFSYFSRSLKPVLPH-KVAHFKDFIPRAF 551
Query: 292 VLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTS 351
ILD E+L+ D + FG+ KAA D V C F FD +Y D S
Sbjct: 552 PGGHSMILDSEVLLIDNRTGKPLPFGTLGVHKKAA----FQDANV-CLFVFDCIYFNDVS 606
Query: 352 VIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFK 411
++ + L ER +LL +E +P+ + S ++ Q LV D + + +
Sbjct: 607 LMDRPLCERRKLLHD------NMVE--IPNRIMFSEMK-QVTKASDLV----DMINRVIQ 653
Query: 412 ETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLD 454
E +E G+VLKD+ +EPG R WLK+K +Y+ G+ D
Sbjct: 654 EGLE----GLVLKDVKGTYEPGKRH--WLKVKKDYLNEGAMAD 690
Score = 154 (59.3 bits), Expect = 9.9e-32, Sum P(2) = 9.9e-32
Identities = 53/206 (25%), Positives = 96/206 (46%)
Query: 403 VDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGS---DLDVLIIX 459
VD + + +E +E G+VLKD+ +EPG R WLK+K +Y+ G+ D++++
Sbjct: 645 VDMINRVIQEGLE----GLVLKDVKGTYEPGKRH--WLKVKKDYLNEGAMADTADLVVLG 698
Query: 460 XXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRK 519
++ FL+ + P + +++ + + G D L + T+L +
Sbjct: 699 AFYGQGSKGGMMSIFLMGCYD---PSS--QKWCTVTKCAGGHDDATLARLQTELD-MVKI 752
Query: 520 YEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAP-YSLRFPR 578
+ P + P ++ ++ N PD + P+K+ + IT +SE +A S+RFPR
Sbjct: 753 SKDPSKIP-NWLKI--NKIYYPDFIVPDPKKAAVWEITG-AEFSKSEAHTADGISIRFPR 808
Query: 579 IDRVRYDKPWHDCLDVQSFVELVHSS 604
R+R DK W + EL S
Sbjct: 809 CTRIRDDKDWKSATTLPQLKELYQLS 834
>UNIPROTKB|P49916 [details] [associations]
symbol:LIG3 "DNA ligase 3" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000795 "synaptonemal
complex" evidence=IEA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA] [GO:0043504 "mitochondrial
DNA repair" evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=IDA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0005515
"protein binding" evidence=IPI] [GO:0033151 "V(D)J recombination"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=TAS] [GO:0007283 "spermatogenesis" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_216
InterPro:IPR000977 InterPro:IPR001510 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF00645 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00347 PROSITE:PS00697 PROSITE:PS50064 PROSITE:PS50160
InterPro:IPR001357 GO:GO:0005524 GO:GO:0005694 GO:GO:0005654
GO:GO:0051301 GO:GO:0046872 GO:GO:0006284 GO:GO:0003677
GO:GO:0008270 GO:GO:0007283 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
EMBL:CH471147 GO:GO:0007131 GO:GO:0006289 DrugBank:DB00290
GO:GO:0006273 eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K10776
EMBL:X84740 EMBL:U40671 EMBL:AF491645 EMBL:AC004223 EMBL:AC022903
EMBL:BC068005 IPI:IPI00000156 IPI:IPI00029081 PIR:I37292
RefSeq:NP_002302.2 RefSeq:NP_039269.2 UniGene:Hs.100299 PDB:1IMO
PDB:1IN1 PDB:1UW0 PDB:3L2P PDB:3PC7 PDB:3PC8 PDB:3QVG PDBsum:1IMO
PDBsum:1IN1 PDBsum:1UW0 PDBsum:3L2P PDBsum:3PC7 PDBsum:3PC8
PDBsum:3QVG ProteinModelPortal:P49916 SMR:P49916 IntAct:P49916
MINT:MINT-4531178 STRING:P49916 PhosphoSite:P49916 DMDM:251757259
PaxDb:P49916 PRIDE:P49916 DNASU:3980 Ensembl:ENST00000262327
Ensembl:ENST00000378526 GeneID:3980 KEGG:hsa:3980 UCSC:uc002hik.2
CTD:3980 GeneCards:GC17P033307 HGNC:HGNC:6600 HPA:HPA006723
MIM:600940 neXtProt:NX_P49916 PharmGKB:PA30374 HOGENOM:HOG000007653
HOVERGEN:HBG005515 InParanoid:P49916 OMA:WSETDLL OrthoDB:EOG44BB1K
BRENDA:6.5.1.1 ChiTaRS:LIG3 EvolutionaryTrace:P49916
GenomeRNAi:3980 NextBio:15598 ArrayExpress:P49916 Bgee:P49916
CleanEx:HS_LIG3 Genevestigator:P49916 GermOnline:ENSG00000005156
Gene3D:3.30.1740.10 Uniprot:P49916
Length = 1009
Score = 281 (104.0 bits), Expect = 8.8e-31, Sum P(2) = 8.8e-31
Identities = 99/343 (28%), Positives = 158/343 (46%)
Query: 124 LTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFH 183
LTI+E+++ L RL+ E+ L + + A ++K II +I DLK+ K +
Sbjct: 372 LTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLD 431
Query: 184 EFHPDAEDLFNVTCDLKLVCEKLKDRNQR-----HKRQDIEVGKA----VRPQLAMRIGD 234
P+A + F + +L+ V E++ Q +R+ + V + V+P LA
Sbjct: 432 ALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTPVQPMLAEACKS 491
Query: 235 AHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSF---LDHSEYGHAMSKIIEQN 291
A +K + E K+DG+R+Q+HKNG YFSRS L H + H I +
Sbjct: 492 VEYAMKKCPNG-MFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPH-KVAHFKDYIPQAF 549
Query: 292 VLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTS 351
ILD E+L+ D + FG+ KAA D V C F FD +Y D S
Sbjct: 550 PGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAA----FQDANV-CLFVFDCIYFNDVS 604
Query: 352 VIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFK 411
++ + L ER + L +E +P+ + S ++ V +D + +
Sbjct: 605 LMDRPLCERRKFLHD------NMVE--IPNRIMFSEMKR--------VTKALDLADMITR 648
Query: 412 ETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLD 454
I+ EG+VLKD+ +EPG R WLK+K +Y+ G+ D
Sbjct: 649 -VIQEGLEGLVLKDVKGTYEPGKRH--WLKVKKDYLNEGAMAD 688
Score = 151 (58.2 bits), Expect = 8.8e-31, Sum P(2) = 8.8e-31
Identities = 51/190 (26%), Positives = 89/190 (46%)
Query: 419 EGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGS---DLDVLIIXXXXXXXXXXXEVAQFL 475
EG+VLKD+ +EPG R WLK+K +Y+ G+ D++++ ++ FL
Sbjct: 655 EGLVLKDVKGTYEPGKRH--WLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFL 712
Query: 476 VALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTN 535
+ + P + +++ + + G D L + +L + + P + P S+ +V
Sbjct: 713 MGCYD---PGS--QKWCTVTKCAGGHDDATLARLQNELD-MVKISKDPSKIP-SWLKV-- 763
Query: 536 NSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAP-YSLRFPRIDRVRYDKPWHDCLDV 594
N PD + P+K+ + IT +SE +A S+RFPR R+R DK W ++
Sbjct: 764 NKIYYPDFIVPDPKKAAVWEITG-AEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNL 822
Query: 595 QSFVELVHSS 604
EL S
Sbjct: 823 PQLKELYQLS 832
>RGD|1309875 [details] [associations]
symbol:Lig3 "ligase III, DNA, ATP-dependent" species:10116
"Rattus norvegicus" [GO:0000794 "condensed nuclear chromosome"
evidence=ISO] [GO:0000795 "synaptonemal complex" evidence=IEA;ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=ISO] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO;IBA] [GO:0005694 "chromosome" evidence=IBA]
[GO:0005739 "mitochondrion" evidence=IBA] [GO:0006266 "DNA
ligation" evidence=IBA] [GO:0006273 "lagging strand elongation"
evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA;ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043504 "mitochondrial DNA repair" evidence=IEA;ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IEA;ISO] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0033151 "V(D)J recombination" evidence=ISO]
InterPro:IPR000977 InterPro:IPR001510 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF00645 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00347 PROSITE:PS00697 PROSITE:PS50064 PROSITE:PS50160
RGD:1309875 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
GO:GO:0008270 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 KO:K10776 CTD:3980 HOGENOM:HOG000007653
HOVERGEN:HBG005515 Gene3D:3.30.1740.10 GeneTree:ENSGT00700000104500
EMBL:BC085959 IPI:IPI00565239 RefSeq:NP_001012011.1
UniGene:Rn.230056 SMR:Q5U2M4 STRING:Q5U2M4
Ensembl:ENSRNOT00000055982 GeneID:303369 KEGG:rno:303369
NextBio:651212 Genevestigator:Q5U2M4 Uniprot:Q5U2M4
Length = 943
Score = 271 (100.5 bits), Expect = 9.8e-31, Sum P(2) = 9.8e-31
Identities = 97/343 (28%), Positives = 156/343 (45%)
Query: 124 LTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFH 183
LTI+E++ L L+ E+ L + + A ++K II +I DLK+ K +
Sbjct: 374 LTIQEVDAFLLHLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLD 433
Query: 184 EFHPDAEDLFNVTCDLKLVCEKLKDRNQR-----HKRQDIEVGKA----VRPQLAMRIGD 234
P+A + F + +L+ V E++ Q +R+ + V + V+P LA
Sbjct: 434 ALDPNAYEAFKASRNLQDVVERVLHNEQEVEKDPGRRRALSVQASLMTPVQPMLAEACKS 493
Query: 235 AHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSF---LDHSEYGHAMSKIIEQN 291
A +K + E K+DG+R+Q+HK G YFSRS L H + H I +
Sbjct: 494 IEYAMKKCPNG-MFSEIKYDGERVQVHKKGDHFSYFSRSLKPVLPH-KVAHFKDYIPKAF 551
Query: 292 VLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTS 351
ILD E+L+ D + + FG+ KAA D V C F FD +Y D S
Sbjct: 552 PGGQSMILDSEVLLIDNNTGKPLPFGTLGVHKKAA----FQDANV-CLFVFDCIYFNDVS 606
Query: 352 VIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFK 411
++ + L ER + L + + R+ + S ++ Q L D + + +
Sbjct: 607 LMDRPLCERRKFLHDNMVEIRNRI--------MFSEMK-QVTKASDLA----DMINRVIR 653
Query: 412 ETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLD 454
E +E G+VLKD+ +EPG R WLK+K +Y+ G+ D
Sbjct: 654 EGLE----GLVLKDVKGTYEPGKRH--WLKVKKDYLNEGAMAD 690
Score = 160 (61.4 bits), Expect = 9.8e-31, Sum P(2) = 9.8e-31
Identities = 53/190 (27%), Positives = 90/190 (47%)
Query: 419 EGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGS---DLDVLIIXXXXXXXXXXXEVAQFL 475
EG+VLKD+ +EPG R WLK+K +Y+ G+ D++++ ++ FL
Sbjct: 657 EGLVLKDVKGTYEPGKRH--WLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFL 714
Query: 476 VALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTN 535
+ + PD+ +++ + + G D L A + K + + P + P S+ ++
Sbjct: 715 MGCYD---PDS--QKWCTVTKCAGGHDDATL-ARLQKELDMVKISKDPSKIP-SWLKI-- 765
Query: 536 NSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAP-YSLRFPRIDRVRYDKPWHDCLDV 594
N PD + P+K+ + IT RSE +A S+RFPR R+R DK W ++
Sbjct: 766 NKIYYPDFIVPDPKKAAVWEITG-AEFSRSEAHTADGISIRFPRCTRIRDDKDWKSATNL 824
Query: 595 QSFVELVHSS 604
EL S
Sbjct: 825 PQLKELYQLS 834
>UNIPROTKB|D4A2K2 [details] [associations]
symbol:Lig3 "DNA ligase" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 RGD:1309875 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OrthoDB:EOG44BB1K Gene3D:3.30.1740.10
IPI:IPI00563728 PRIDE:D4A2K2 Ensembl:ENSRNOT00000047849
ArrayExpress:D4A2K2 Uniprot:D4A2K2
Length = 955
Score = 271 (100.5 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
Identities = 97/343 (28%), Positives = 156/343 (45%)
Query: 124 LTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFH 183
LTI+E++ L L+ E+ L + + A ++K II +I DLK+ K +
Sbjct: 378 LTIQEVDAFLLHLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLD 437
Query: 184 EFHPDAEDLFNVTCDLKLVCEKLKDRNQR-----HKRQDIEVGKA----VRPQLAMRIGD 234
P+A + F + +L+ V E++ Q +R+ + V + V+P LA
Sbjct: 438 ALDPNAYEAFKASRNLQDVVERVLHNEQEVEKDPGRRRALSVQASLMTPVQPMLAEACKS 497
Query: 235 AHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSF---LDHSEYGHAMSKIIEQN 291
A +K + E K+DG+R+Q+HK G YFSRS L H + H I +
Sbjct: 498 IEYAMKKCPNG-MFSEIKYDGERVQVHKKGDHFSYFSRSLKPVLPH-KVAHFKDYIPKAF 555
Query: 292 VLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTS 351
ILD E+L+ D + + FG+ KAA D V C F FD +Y D S
Sbjct: 556 PGGQSMILDSEVLLIDNNTGKPLPFGTLGVHKKAA----FQDANV-CLFVFDCIYFNDVS 610
Query: 352 VIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFK 411
++ + L ER + L + + R+ + S ++ Q L D + + +
Sbjct: 611 LMDRPLCERRKFLHDNMVEIRNRI--------MFSEMK-QVTKASDLA----DMINRVIR 657
Query: 412 ETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLD 454
E +E G+VLKD+ +EPG R WLK+K +Y+ G+ D
Sbjct: 658 EGLE----GLVLKDVKGTYEPGKRH--WLKVKKDYLNEGAMAD 694
Score = 160 (61.4 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
Identities = 53/190 (27%), Positives = 90/190 (47%)
Query: 419 EGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGS---DLDVLIIXXXXXXXXXXXEVAQFL 475
EG+VLKD+ +EPG R WLK+K +Y+ G+ D++++ ++ FL
Sbjct: 661 EGLVLKDVKGTYEPGKRH--WLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFL 718
Query: 476 VALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTN 535
+ + PD+ +++ + + G D L A + K + + P + P S+ ++
Sbjct: 719 MGCYD---PDS--QKWCTVTKCAGGHDDATL-ARLQKELDMVKISKDPSKIP-SWLKI-- 769
Query: 536 NSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAP-YSLRFPRIDRVRYDKPWHDCLDV 594
N PD + P+K+ + IT RSE +A S+RFPR R+R DK W ++
Sbjct: 770 NKIYYPDFIVPDPKKAAVWEITG-AEFSRSEAHTADGISIRFPRCTRIRDDKDWKSATNL 828
Query: 595 QSFVELVHSS 604
EL S
Sbjct: 829 PQLKELYQLS 838
>UNIPROTKB|D4A837 [details] [associations]
symbol:Lig3 "DNA ligase" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 InterPro:IPR001357 RGD:1309875
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0008270 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 Gene3D:3.30.1740.10 IPI:IPI00370404
Ensembl:ENSRNOT00000029555 ArrayExpress:D4A837 Uniprot:D4A837
Length = 1014
Score = 271 (100.5 bits), Expect = 1.4e-30, Sum P(3) = 1.4e-30
Identities = 97/343 (28%), Positives = 156/343 (45%)
Query: 124 LTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFH 183
LTI+E++ L L+ E+ L + + A ++K II +I DLK+ K +
Sbjct: 378 LTIQEVDAFLLHLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLD 437
Query: 184 EFHPDAEDLFNVTCDLKLVCEKLKDRNQR-----HKRQDIEVGKA----VRPQLAMRIGD 234
P+A + F + +L+ V E++ Q +R+ + V + V+P LA
Sbjct: 438 ALDPNAYEAFKASRNLQDVVERVLHNEQEVEKDPGRRRALSVQASLMTPVQPMLAEACKS 497
Query: 235 AHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSF---LDHSEYGHAMSKIIEQN 291
A +K + E K+DG+R+Q+HK G YFSRS L H + H I +
Sbjct: 498 IEYAMKKCPNG-MFSEIKYDGERVQVHKKGDHFSYFSRSLKPVLPH-KVAHFKDYIPKAF 555
Query: 292 VLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTS 351
ILD E+L+ D + + FG+ KAA D V C F FD +Y D S
Sbjct: 556 PGGQSMILDSEVLLIDNNTGKPLPFGTLGVHKKAA----FQDANV-CLFVFDCIYFNDVS 610
Query: 352 VIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFK 411
++ + L ER + L + + R+ + S ++ Q L D + + +
Sbjct: 611 LMDRPLCERRKFLHDNMVEIRNRI--------MFSEMK-QVTKASDLA----DMINRVIR 657
Query: 412 ETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLD 454
E +E G+VLKD+ +EPG R WLK+K +Y+ G+ D
Sbjct: 658 EGLE----GLVLKDVKGTYEPGKRH--WLKVKKDYLNEGAMAD 694
Score = 160 (61.4 bits), Expect = 1.4e-30, Sum P(3) = 1.4e-30
Identities = 53/190 (27%), Positives = 90/190 (47%)
Query: 419 EGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGS---DLDVLIIXXXXXXXXXXXEVAQFL 475
EG+VLKD+ +EPG R WLK+K +Y+ G+ D++++ ++ FL
Sbjct: 661 EGLVLKDVKGTYEPGKRH--WLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFL 718
Query: 476 VALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTN 535
+ + PD+ +++ + + G D L A + K + + P + P S+ ++
Sbjct: 719 MGCYD---PDS--QKWCTVTKCAGGHDDATL-ARLQKELDMVKISKDPSKIP-SWLKI-- 769
Query: 536 NSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAP-YSLRFPRIDRVRYDKPWHDCLDV 594
N PD + P+K+ + IT RSE +A S+RFPR R+R DK W ++
Sbjct: 770 NKIYYPDFIVPDPKKAAVWEITG-AEFSRSEAHTADGISIRFPRCTRIRDDKDWKSATNL 828
Query: 595 QSFVELVHSS 604
EL S
Sbjct: 829 PQLKELYQLS 838
Score = 48 (22.0 bits), Expect = 1.4e-30, Sum P(3) = 1.4e-30
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 862 YDVNFNS-LTESFT-AREKHLLWNKKLH----VVRSQWLEDCLAKEQ 902
Y V FN L + F A H+L N+ + +V S+W+ C+ K +
Sbjct: 963 YFVAFNGDLVQEFDMASATHVLGNRDKNTDAQLVSSEWIWACIRKRR 1009
Score = 41 (19.5 bits), Expect = 7.5e-30, Sum P(3) = 7.5e-30
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 741 YLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTI 788
YL S ++L+ F+ + D+A +L N D++ D + +
Sbjct: 949 YLPPSTPDFRRLKRYFVAFNGDLVQEFDMASATHVLGNRDKNTDAQLV 996
>MGI|MGI:109152 [details] [associations]
symbol:Lig3 "ligase III, DNA, ATP-dependent" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000794 "condensed nuclear chromosome" evidence=IDA]
[GO:0000795 "synaptonemal complex" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=ISO] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006266 "DNA ligation" evidence=IBA]
[GO:0006273 "lagging strand elongation" evidence=IBA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IMP] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0043504 "mitochondrial DNA repair"
evidence=IMP] [GO:0045910 "negative regulation of DNA
recombination" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000977 InterPro:IPR001510 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF00645 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00347 PROSITE:PS00697 PROSITE:PS50064 PROSITE:PS50160
InterPro:IPR001357 EMBL:U66057 MGI:MGI:109152 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0051301 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0007049
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006303
GO:GO:0006289 GO:GO:0045910 GO:GO:0043504 GO:GO:0006273
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 HOGENOM:HOG000007653
HOVERGEN:HBG005515 OrthoDB:EOG44BB1K Gene3D:3.30.1740.10
EMBL:U66058 EMBL:AL645594 IPI:IPI00124272 IPI:IPI00230471
UniGene:Mm.277136 ProteinModelPortal:P97386 SMR:P97386
IntAct:P97386 STRING:P97386 PhosphoSite:P97386 PaxDb:P97386
PRIDE:P97386 InParanoid:P97386 Bgee:P97386 CleanEx:MM_LIG3
Genevestigator:P97386 GermOnline:ENSMUSG00000020697 GO:GO:0000795
Uniprot:P97386
Length = 1015
Score = 273 (101.2 bits), Expect = 5.8e-30, Sum P(3) = 5.8e-30
Identities = 98/343 (28%), Positives = 155/343 (45%)
Query: 124 LTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFH 183
LTI+E++ L L+ E+ L + + A ++K II +I DLK+ K +
Sbjct: 377 LTIQEVDAFLLHLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLD 436
Query: 184 EFHPDAEDLFNVTCDLKLVCEKL--------KDRNQRHK-RQDIEVGKAVRPQLAMRIGD 234
P+A + F + +L+ V E++ KD +R R + V+P LA
Sbjct: 437 ALDPNAYEAFKASRNLQDVVERVLHNEQEVEKDPGRRRALRVQASLMTPVQPMLAEACKS 496
Query: 235 AHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSF---LDHSEYGHAMSKIIEQN 291
A +K + E K+DG+R+Q+HK G YFSRS L H + H I +
Sbjct: 497 IEYAMKKCPNG-MFSEIKYDGERVQVHKKGDHFSYFSRSLKPVLPH-KVAHFKDYIPKAF 554
Query: 292 VLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTS 351
ILD E+L+ D + + FG+ KAA D V C F FD +Y D S
Sbjct: 555 PGGQSMILDSEVLLIDNNTGKPLPFGTLGVHKKAA----FQDANV-CLFVFDCIYFNDVS 609
Query: 352 VIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFK 411
++ + L ER + L + + R+ + S ++ Q L D + + +
Sbjct: 610 LMDRPLCERRKFLHDNMVEIRNRI--------MFSEMK-QVTKASDLA----DMINRVIR 656
Query: 412 ETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLD 454
E +E G+VLKD+ +EPG R WLK+K +Y+ G+ D
Sbjct: 657 EGLE----GLVLKDVKGTYEPGKRH--WLKVKKDYLNEGAMAD 693
Score = 159 (61.0 bits), Expect = 5.8e-30, Sum P(3) = 5.8e-30
Identities = 53/190 (27%), Positives = 90/190 (47%)
Query: 419 EGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGS---DLDVLIIXXXXXXXXXXXEVAQFL 475
EG+VLKD+ +EPG R WLK+K +Y+ G+ D++++ ++ FL
Sbjct: 660 EGLVLKDVKGTYEPGKRH--WLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFL 717
Query: 476 VALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTN 535
+ + PD+ +++ + + G D L A + K + + P + P S+ ++
Sbjct: 718 MGCYD---PDS--QKWCTVTKCAGGHDDATL-ARLQKELVMVKISKDPSKIP-SWLKI-- 768
Query: 536 NSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAP-YSLRFPRIDRVRYDKPWHDCLDV 594
N PD + P+K+ + IT RSE +A S+RFPR R+R DK W ++
Sbjct: 769 NKIYYPDFIVPDPKKAAVWEITG-AEFSRSEAHTADGISIRFPRCTRIRDDKDWKSATNL 827
Query: 595 QSFVELVHSS 604
EL S
Sbjct: 828 PQLKELYQLS 837
Score = 41 (19.5 bits), Expect = 5.8e-30, Sum P(3) = 5.8e-30
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 863 DVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQ 902
+ + S T REK N +V S+W+ C+ K +
Sbjct: 975 EFDMGSATHVLGNREK----NTDAQLVSSEWIWACIRKRR 1010
>UNIPROTKB|Q8TMT1 [details] [associations]
symbol:lig2 "DNA ligase 2" species:188937 "Methanosarcina
acetivorans C2A" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] HAMAP:MF_00407 InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
InterPro:IPR022865 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005694 GO:GO:0051301 GO:GO:0046872 GO:GO:0003677
GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
KO:K10747 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 EMBL:AE010299
GenomeReviews:AE010299_GR RefSeq:NP_617472.1
ProteinModelPortal:Q8TMT1 GeneID:1474460 KEGG:mac:MA2571
OMA:ARVQVHK ProtClustDB:CLSK568925
BioCyc:MACE188937:GI2O-2632-MONOMER Uniprot:Q8TMT1
Length = 568
Score = 266 (98.7 bits), Expect = 2.6e-29, Sum P(3) = 2.6e-29
Identities = 113/414 (27%), Positives = 191/414 (46%)
Query: 52 ILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAE 111
+ P+ E+ G+ S+L + L A GMS S ++ LI R G + G ++ +
Sbjct: 50 VFPAWSGEQ--LGIGTSLLYSSLSKASGMSVRSIES--LI--RTTG---DIGETALLILK 100
Query: 112 VLQRRQGMISGGLTIK-ELN--DLLDRL-----ASSENRAE-KISVLSTLIKKTNAQEMK 162
++ Q S L + EL+ ++ R AS + E KI L L + +E K
Sbjct: 101 EKRKNQVTFSSFLEEQPELSITEVYQRFKTASEASGKGSQELKIKNLQFLFNSSTPREAK 160
Query: 163 WIIMIILKDLKLGISE----KSIFHEFH-PD--AEDLFNVTCDLKLVCEKLKDRN-QRHK 214
+I + L++L++G+ E +I F P E F VT DL +V K+ + +
Sbjct: 161 YISRLALEELRIGVGEGVVRDAIARAFSVPSDKVEHAFMVTNDLGIVAAAAKEGGIEALE 220
Query: 215 RQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSF 274
IE+ + ++ L+ D A R + G IE KFDG R+QIHKNG+ + FSR
Sbjct: 221 SLGIEINRPIKMMLSQISPDIDADIRDMKG--AAIEWKFDGARVQIHKNGNSVTLFSRKL 278
Query: 275 LDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDR 334
+ + + +II ++V + ILDGE + D + + F QEI K R +
Sbjct: 279 ENVTNSLPDLVEIIRKHVKAESAILDGEAVAVDEN-GKPRAF---QEILKRFRRKYDVEE 334
Query: 335 QVLCY----FAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRP 390
+ L FD++Y+ ++I L ER + L+ V+ S +++ D
Sbjct: 335 KALGIPIQLNLFDIMYLNGRTLIDLPLVERRKALESCVESSVEDSKSISVDE-------- 386
Query: 391 QGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKP 444
++ +++ VEK ++E + EG+++K+ S + PG R WLK KP
Sbjct: 387 ------QVITGDLELVEKIYREALNAGHEGVMVKNPNSAYSPGKRGKNWLKKKP 434
Score = 133 (51.9 bits), Expect = 2.6e-29, Sum P(3) = 2.6e-29
Identities = 33/116 (28%), Positives = 59/116 (50%)
Query: 398 LVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLI 457
++ +++ VEK ++E + EG+++K+ S + PG R WLK KP LD+++
Sbjct: 388 VITGDLELVEKIYREALNAGHEGVMVKNPNSAYSPGKRGKNWLKKKPLM----ETLDLVV 443
Query: 458 IXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKL 513
+ + + VA + P+T RF+ +VGTGL+DE+L + L
Sbjct: 444 VGAEWGYGRRANLIGSYSVACYD---PET--SRFLQVGKVGTGLTDEQLKELTEML 494
Score = 54 (24.1 bits), Expect = 2.6e-29, Sum P(3) = 2.6e-29
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 552 IILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDK 586
++L I + +S + + ++LRFPR R+R DK
Sbjct: 513 VVLEIAFE-EIQKSPNYDSGFALRFPRFIRIRDDK 546
>UNIPROTKB|Q24FD9 [details] [associations]
symbol:TTHERM_00865240 "DNA ligase" species:312017
"Tetrahymena thermophila SB210" [GO:0003910 "DNA ligase (ATP)
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289
GO:GO:0006273 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K01971 EMBL:GG662285
RefSeq:XP_001026764.1 EnsemblProtists:EAS06519 GeneID:7839837
KEGG:tet:TTHERM_00865240 Uniprot:Q24FD9
Length = 635
Score = 347 (127.2 bits), Expect = 3.6e-28, P = 3.6e-28
Identities = 143/518 (27%), Positives = 248/518 (47%)
Query: 103 GNFPMVAAEVLQRR---QG---MISGGLTIKELNDLLDRLASSE---NRAEKISVLSTLI 153
G+ + A E+L+++ +G L+I E+ ++L + + +R EK ++ +
Sbjct: 117 GDIGLYAKEMLEKKLEKEGNNRTEKNHLSILEVTSFFEKLKNLQGDRSRLEKQELIIDFL 176
Query: 154 KKT-NAQEMKWIIMIILKDLKLGISEKSIFHEF-HPDAEDLFNVTCDLKLVCEKLKDRNQ 211
KK + E+++ I I+ K L++G+SEKSI + + + ++ LK V +K+ N
Sbjct: 177 KKIQDPLEIQYFIRILSKSLRIGVSEKSIIKALTNINKKKKNSLDSLLKNVQDKIFGYNT 236
Query: 212 RHKRQDIEVGKAVRPQLAMRIGDAHAAWR---KLHGKEVVIECKFDGDRIQIHKNGSE-I 267
DI++G V P LA + D + K K+V +E K+DG+R Q+H + I
Sbjct: 237 A-LHTDIQIGTPVPPMLAKPVSDFDELLKFLKKYESKKVSLELKYDGERCQVHYGKKKGI 295
Query: 268 HYFSRSF-LDHSEYGHA---MSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIA 323
FSR+ + + +Y + K ++N V+ CILDGE++V D+ N F Q+
Sbjct: 296 KLFSRNLEIQNEKYPQLVQQLEKYFQKNNSVEDCILDGEIVVTDSKGN-IKSFQEQQQNR 354
Query: 324 KAARDG---LSSDRQ-VLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLV 379
K +D ++ D + + FD+L++ + Q+ KE +L +K + ++
Sbjct: 355 KRKQDSNKVVAFDEDNIEKIYLFDILFL---NACEQNTKE--QLYRKSL------IKENF 403
Query: 380 PDHGLNSHVRPQGEPCWSL-VAHNVDEVEKFFKETIENRDEGIVLKDLGSK--WEPGDRS 436
P G +H + + L + + DE++K K+ I+ ++EG ++K L S ++ R+
Sbjct: 404 PIEGPVNHAESK---IFDLSIQKDFDELKKLVKQYIDQKEEGAMVKSLDSNTFYDNNGRT 460
Query: 437 GKWLKLKPEYIRAG-SD-LDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISF 494
+W KLK + + G +D DV+ I +L+A D + +++
Sbjct: 461 -QWAKLKKQVLSGGLADTFDVIPIAAYYGKGKRSGVYGSYLLACY-----DDKKKEYVAL 514
Query: 495 CRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEK---- 550
C++GTG SD+ L +LK +K K P Y V K PDVW + +
Sbjct: 515 CKIGTGFSDQFLQDSTDRLK---QKVCSQK---PKEYSVHRTFK--PDVWFQKDAEVWEV 566
Query: 551 -SIILSITSDIRTIRSEVFSAP-YSLRFPRIDRVRYDK 586
S LS +S I TI +S SLRFPR RVR DK
Sbjct: 567 ESDSLS-SSPIYTIGKMNYSDNGISLRFPRFLRVRDDK 603
>UNIPROTKB|Q8TSR7 [details] [associations]
symbol:lig1 "DNA ligase 1" species:188937 "Methanosarcina
acetivorans C2A" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] HAMAP:MF_00407 InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
InterPro:IPR022865 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005694 GO:GO:0051301 GO:GO:0046872 GO:GO:0003677
GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
KO:K10747 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 HSSP:P18858 EMBL:AE010299
RefSeq:NP_615688.1 ProteinModelPortal:Q8TSR7 GeneID:1472620
GenomeReviews:AE010299_GR KEGG:mac:MA0728 OMA:PAFENTT
ProtClustDB:CLSK281490 BioCyc:MACE188937:GI2O-796-MONOMER
Uniprot:Q8TSR7
Length = 580
Score = 339 (124.4 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 124/487 (25%), Positives = 222/487 (45%)
Query: 59 ERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQG 118
E + G+K+ ++ + A G+S++ +K A AG+ VA E+ ++R+
Sbjct: 55 ENTTLGIKDRLVTRAIAGAYGVSEEEV--------KKRYA--RAGDLGDVAFELSKKREA 104
Query: 119 MISGGLTIKELNDLLDRLASSENRAEK-ISVLSTLIKKTNAQEMKWIIMIILKDLKLGIS 177
++ K L + + AS + EK +LS +++K +E K+II I+L L+LG
Sbjct: 105 SLTIEEVFKRLRQIKE--ASGKGSQEKKTGLLSDILQKATPEEGKYIIRIVLGRLRLGFG 162
Query: 178 EKSIFHEF---------HPDA-EDLFNVTCDLKLVCEKLKDRNQRHKRQ-DIEVGKAVRP 226
++ + F H ++ ++V D+ + + L + I+ G+ V+
Sbjct: 163 DQFLLEAFSIAFTGDKKHAGKIKESYSVCTDIGELAQTLAEHGAGAPGYFSIKPGRPVKS 222
Query: 227 QLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSK 286
LA R+ ++ GK+ E K+DG+R+QIHK G EI FSR D + + +
Sbjct: 223 MLAQRVESFEELEERIKGKKAAEE-KYDGERVQIHKAGDEIKAFSRRLEDITAQYPDIIE 281
Query: 287 IIEQNVLVDRCILDGEMLVW---DTSLNRFAEFGSNQEIAKAARDGLSSDRQVLC---YF 340
+ +++ D +LDGE++ + + R EF Q + + R + C F
Sbjct: 282 AVRESISADTIVLDGEIVAYAELEKENTRIEEFYPFQNLMQRRRKYEVEKYREKCPVAVF 341
Query: 341 AFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVA 400
FD+LY+ S++ ++ ER LL++ V S G+ H+ + V
Sbjct: 342 FFDILYLNGESLLKKTYPERRALLEEHVNGS-----------GI-VHLTRR------TVT 383
Query: 401 HNVDEVEKFFKETIENRDEGIVLKDLGSK--WEPGDRSGKWLKLKPEYIRAGSD-LDVLI 457
N++E+E FF ET+E EGIV K + S +E G RS WLK K EY + D+++
Sbjct: 384 ENIEELEDFFNETVEKGLEGIVAKSMSSNSVYEAGKRSWLWLKWKQEYSEGMRETFDLVV 443
Query: 458 IXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYF 517
+ L A+ ++F +F +VGTG ++ + + + + L +
Sbjct: 444 VGSYYGKGKRKGSFGALLCAVLNEEE-----QQFETFTKVGTGFTEADAEEINSLLSAHT 498
Query: 518 RKYEYPK 524
E PK
Sbjct: 499 VS-EAPK 504
Score = 170 (64.9 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 60/208 (28%), Positives = 91/208 (43%)
Query: 399 VAHNVDEVEKFFKETIENRDEGIVLKDLGSK--WEPGDRSGKWLKLKPEYIRAGSD-LDV 455
V N++E+E FF ET+E EGIV K + S +E G RS WLK K EY + D+
Sbjct: 382 VTENIEELEDFFNETVEKGLEGIVAKSMSSNSVYEAGKRSWLWLKWKQEYSEGMRETFDL 441
Query: 456 LIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKP 515
+++ L A+ ++F +F +VGTG ++ + + + + L
Sbjct: 442 VVVGSYYGKGKRKGSFGALLCAVLNEEE-----QQFETFTKVGTGFTEADAEEINSLLSA 496
Query: 516 YFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILS--IT-SDIRTIRSEVFSAPY 572
+ E PK V PD++IE +L IT S T
Sbjct: 497 HTVS-EAPKN-------VIIKKGMLPDIFIEPAVVIEVLGSEITNSPGHTAGEGEEETGL 548
Query: 573 SLRFPRIDRVRYDKPWHDCLDVQSFVEL 600
+LRFPR R+RYD+ D V+ +L
Sbjct: 549 ALRFPRFLRIRYDRAPFDATTVREIRDL 576
Score = 42 (19.8 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 764 FWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCP 797
F + D +I LLS SE PK + KK P
Sbjct: 482 FTEADAEEINSLLSAHTVSEAPKNV-IIKKGMLP 514
>WB|WBGene00002986 [details] [associations]
symbol:lig-4 species:6239 "Caenorhabditis elegans"
[GO:0006281 "DNA repair" evidence=IEA;IMP] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0007126 "meiosis" evidence=IMP] InterPro:IPR012308
InterPro:IPR012310 Pfam:PF01068 Pfam:PF04675 PROSITE:PS50160
InterPro:IPR001357 GO:GO:0005524 GO:GO:0009792 GO:GO:0007126
GO:GO:0005694 GO:GO:0003677 GO:GO:0006310 InterPro:IPR012340
SUPFAM:SSF50249 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006303
GO:GO:0006289 EMBL:FO080423 GO:GO:0006273 eggNOG:COG1793
GO:GO:0003910 KO:K10777 GO:GO:0032807 GeneTree:ENSGT00700000104500
RefSeq:NP_498653.2 ProteinModelPortal:Q95YE6 SMR:Q95YE6
IntAct:Q95YE6 MINT:MINT-228244 STRING:Q95YE6 PaxDb:Q95YE6
EnsemblMetazoa:C07H6.1 GeneID:176067 KEGG:cel:CELE_C07H6.1
UCSC:C07H6.1 CTD:176067 WormBase:C07H6.1 HOGENOM:HOG000018802
InParanoid:Q95YE6 OMA:NGWFKLK NextBio:890968 Uniprot:Q95YE6
Length = 741
Score = 337 (123.7 bits), Expect = 7.4e-27, P = 7.4e-27
Identities = 163/651 (25%), Positives = 282/651 (43%)
Query: 12 LVSLFNWIQKTKPAAKKRSKFRKFLDTY---C-DSVDYFSALRLILPSLDRERGSYGLKE 67
+V +FN I++T K++ F+K +++ C D D F +R + +R R + +
Sbjct: 10 VVDVFNKIRRTSNVKSKQATFQKNFESWKEKCSDPSDMFVIIRFFVSDYERFR-KFDMGP 68
Query: 68 SVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMISGGLTIK 127
+ LA+ + A AD V I+ AA ++ E R + S +T+
Sbjct: 69 TKLASFM--AKTFHDVRADYVSTISKDASTAARQLAE--KISEEY--RTENDESTVVTVS 122
Query: 128 ELNDLLDRLASSE-NRAEKISVLSTLIKKTNAQEMKWIIMIILKDLK--LGISEKSIFHE 184
ELN++LD LA+ + K +S L+K+ + E++WI +ILK+++ LG I
Sbjct: 123 ELNEILDFLAAGPMDDGNKRDKMSKLVKRCSEDELEWIFNVILKNVESALGAPSNRILDW 182
Query: 185 FHPDAEDLFNVTCDLKLVCE-KL---KDRNQRHKRQDIE---VGKAVRPQLAMRI--GDA 235
P A +++ T DLK V + KL K N+ + D + + K P L + GD
Sbjct: 183 ISPSACAIWDQTHDLKAVLKGKLVENKGTNELGETNDDDDEHLFKIWTPMLLQKQKRGDW 242
Query: 236 HAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHS-EYGH---AMSKIIEQ- 290
+A K G++ ++ KFDG+ + +HK G+E +F+R+ D S EYG A+ K+ +
Sbjct: 243 YANIEKFGGQKFFLQTKFDGENVLLHKKGNEYRWFTRNNNDFSKEYGDSSMAIGKLSSRI 302
Query: 291 ----NVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAA----RDGLSSDRQVLCYFAF 342
N + I + E+++WD + + A R D Q L F
Sbjct: 303 HSFFNKECESAIFNCELMLWDKKTKKLCRHNDASTTSDAQVLSFRHVKPDDNQQLTVVLF 362
Query: 343 DVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHN 402
D+LY+ L +R E+L K+ K R +T+ + H +G
Sbjct: 363 DLLYLNGKPFFGAPLHQRLEML-KIAPLKKEREDTIF----VAKH--EEGS--------K 407
Query: 403 VDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGK--WLKLKPEYIRAGSDLDVLIIXX 460
+++++FF+ + N +EGIV+K S + G RS W KLKP + DLD+ ++
Sbjct: 408 KEDIQQFFEIAMANNEEGIVVKRTDSVYVKGQRSASNGWFKLKPSASK-DCDLDLALVAV 466
Query: 461 XXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKY 520
+ +F A E+ T + C G LSD +A+ +
Sbjct: 467 HPGAGRNGKTLYRF-AAFDEK----TQDYKLCLSCSYG--LSDTVREAIRFEYGQLLE-- 517
Query: 521 EYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRID 580
E P+ +FY + R D E+ ++ ITS+ +R+ P +R R+D
Sbjct: 518 EAPEEL--TFYGKRPKNIARGDGGYIDFERWQVIKITSN--GVRNGKLVDPV-MREWRLD 572
Query: 581 R-VRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRK 630
+ V W + D + V+ + ++ + D K R +RK
Sbjct: 573 KPVEQVNTWEEFSDYATKVQECKLGDNVDSDEEDSEDKKPDTLKVERITRK 623
>UNIPROTKB|Q95YE6 [details] [associations]
symbol:lig-4 "Protein LIG-4" species:6239 "Caenorhabditis
elegans" [GO:0032807 "DNA ligase IV complex" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
InterPro:IPR012308 InterPro:IPR012310 Pfam:PF01068 Pfam:PF04675
PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524 GO:GO:0009792
GO:GO:0007126 GO:GO:0005694 GO:GO:0003677 GO:GO:0006310
InterPro:IPR012340 SUPFAM:SSF50249 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0006303 GO:GO:0006289 EMBL:FO080423 GO:GO:0006273
eggNOG:COG1793 GO:GO:0003910 KO:K10777 GO:GO:0032807
GeneTree:ENSGT00700000104500 RefSeq:NP_498653.2
ProteinModelPortal:Q95YE6 SMR:Q95YE6 IntAct:Q95YE6 MINT:MINT-228244
STRING:Q95YE6 PaxDb:Q95YE6 EnsemblMetazoa:C07H6.1 GeneID:176067
KEGG:cel:CELE_C07H6.1 UCSC:C07H6.1 CTD:176067 WormBase:C07H6.1
HOGENOM:HOG000018802 InParanoid:Q95YE6 OMA:NGWFKLK NextBio:890968
Uniprot:Q95YE6
Length = 741
Score = 337 (123.7 bits), Expect = 7.4e-27, P = 7.4e-27
Identities = 163/651 (25%), Positives = 282/651 (43%)
Query: 12 LVSLFNWIQKTKPAAKKRSKFRKFLDTY---C-DSVDYFSALRLILPSLDRERGSYGLKE 67
+V +FN I++T K++ F+K +++ C D D F +R + +R R + +
Sbjct: 10 VVDVFNKIRRTSNVKSKQATFQKNFESWKEKCSDPSDMFVIIRFFVSDYERFR-KFDMGP 68
Query: 68 SVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMISGGLTIK 127
+ LA+ + A AD V I+ AA ++ E R + S +T+
Sbjct: 69 TKLASFM--AKTFHDVRADYVSTISKDASTAARQLAE--KISEEY--RTENDESTVVTVS 122
Query: 128 ELNDLLDRLASSE-NRAEKISVLSTLIKKTNAQEMKWIIMIILKDLK--LGISEKSIFHE 184
ELN++LD LA+ + K +S L+K+ + E++WI +ILK+++ LG I
Sbjct: 123 ELNEILDFLAAGPMDDGNKRDKMSKLVKRCSEDELEWIFNVILKNVESALGAPSNRILDW 182
Query: 185 FHPDAEDLFNVTCDLKLVCE-KL---KDRNQRHKRQDIE---VGKAVRPQLAMRI--GDA 235
P A +++ T DLK V + KL K N+ + D + + K P L + GD
Sbjct: 183 ISPSACAIWDQTHDLKAVLKGKLVENKGTNELGETNDDDDEHLFKIWTPMLLQKQKRGDW 242
Query: 236 HAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHS-EYGH---AMSKIIEQ- 290
+A K G++ ++ KFDG+ + +HK G+E +F+R+ D S EYG A+ K+ +
Sbjct: 243 YANIEKFGGQKFFLQTKFDGENVLLHKKGNEYRWFTRNNNDFSKEYGDSSMAIGKLSSRI 302
Query: 291 ----NVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAA----RDGLSSDRQVLCYFAF 342
N + I + E+++WD + + A R D Q L F
Sbjct: 303 HSFFNKECESAIFNCELMLWDKKTKKLCRHNDASTTSDAQVLSFRHVKPDDNQQLTVVLF 362
Query: 343 DVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHN 402
D+LY+ L +R E+L K+ K R +T+ + H +G
Sbjct: 363 DLLYLNGKPFFGAPLHQRLEML-KIAPLKKEREDTIF----VAKH--EEGS--------K 407
Query: 403 VDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGK--WLKLKPEYIRAGSDLDVLIIXX 460
+++++FF+ + N +EGIV+K S + G RS W KLKP + DLD+ ++
Sbjct: 408 KEDIQQFFEIAMANNEEGIVVKRTDSVYVKGQRSASNGWFKLKPSASK-DCDLDLALVAV 466
Query: 461 XXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKY 520
+ +F A E+ T + C G LSD +A+ +
Sbjct: 467 HPGAGRNGKTLYRF-AAFDEK----TQDYKLCLSCSYG--LSDTVREAIRFEYGQLLE-- 517
Query: 521 EYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRID 580
E P+ +FY + R D E+ ++ ITS+ +R+ P +R R+D
Sbjct: 518 EAPEEL--TFYGKRPKNIARGDGGYIDFERWQVIKITSN--GVRNGKLVDPV-MREWRLD 572
Query: 581 R-VRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRK 630
+ V W + D + V+ + ++ + D K R +RK
Sbjct: 573 KPVEQVNTWEEFSDYATKVQECKLGDNVDSDEEDSEDKKPDTLKVERITRK 623
>UNIPROTKB|O67398 [details] [associations]
symbol:lig "Probable DNA ligase" species:224324 "Aquifex
aeolicus VF5" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA]
HAMAP:MF_00407 InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
InterPro:IPR022865 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005694 GO:GO:0051301 GO:GO:0046872 GO:GO:0003677
GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
KO:K10747 OMA:AQVACLY GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
EMBL:AE000657 PIR:D70421 RefSeq:NP_213963.1
ProteinModelPortal:O67398 SMR:O67398 GeneID:1192929
GenomeReviews:AE000657_GR KEGG:aae:aq_1394 PATRIC:20959956
HOGENOM:HOG000036008 ProtClustDB:PRK01109
BioCyc:AAEO224324:GJBH-1004-MONOMER Uniprot:O67398
Length = 584
Score = 239 (89.2 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 74/264 (28%), Positives = 133/264 (50%)
Query: 122 GGLTIKEL-NDLLD--RLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISE 178
G LT++E+ N LL+ + ++ KIS+ ++L+KK E K+++ I + L+LGI +
Sbjct: 107 GTLTVEEVYNGLLNIAKAVGIGSQERKISIFASLLKKATPLEAKYLLRTITERLRLGIGD 166
Query: 179 KSIFHEF----------HPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQ-DIEVGKAVRPQ 227
+I E +N+T DL V + L ++ +Q I+VG+ VRP
Sbjct: 167 NTILEALSIAFTGSSVNREVVERAYNLTSDLGYVAKILAEKGLEGVKQVKIQVGRPVRPM 226
Query: 228 LAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKI 287
LA R+ RKL GK E K+DG+RIQ H+ G E + FSR + + + +
Sbjct: 227 LAERMSSPILILRKLGGK-CGAEYKYDGERIQAHRKGDEFYLFSRRLENITHQYPDLIEF 285
Query: 288 IEQNVLVDRCILDGEMLVWDTSLNRFAEFGS--NQEIAKAARDGLSSDRQVLCYFAFDVL 345
+++ + D I++ E +V D + F ++++ + ++ + + F FD++
Sbjct: 286 LKEAIPHD-FIVELEAVVIDPASGEIRPFQELMHRKVKYVTKYHIT--KYPVAGFLFDII 342
Query: 346 YVGDTSVIHQSLKERHELLQKVVK 369
Y+ + + ER E+L+KVVK
Sbjct: 343 YLDGEDLTLKPYPERREILEKVVK 366
Score = 145 (56.1 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 62/215 (28%), Positives = 97/215 (45%)
Query: 399 VAHNVDEVEKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIRAGSD-LDV 455
+ NV+++E FF + IE EG+V K L S ++ G R W+K K +Y +D LD+
Sbjct: 378 IVDNVEDLENFFYQAIEEGCEGLVCKSLAPNSIYQAGKRGFLWIKYKRDYKSVLADTLDL 437
Query: 456 LIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKP 515
+++ L+A + P D F + +VGTG ++++ + L P
Sbjct: 438 VVVGGFYGKGQRKGTFGSLLMACYD-PESDM----FKTVTKVGTGFTEDDFKKLEEILMP 492
Query: 516 YFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYS-- 573
RK + R P +V NS D+W E P ++L IT T+ S V + +
Sbjct: 493 --RKLNH--RHP----RV--NSILEADMWFE-PY--LVLEITGAELTL-SPVHTCGWGKV 538
Query: 574 -------LRFPRID-RVRYDKPWHDCLDVQSFVEL 600
LRFPR R R+DK D Q +E+
Sbjct: 539 SPNRGIGLRFPRFTGRYRFDKRPEDATTEQEIIEM 573
Score = 41 (19.5 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 129 LNDLLDRLASSENRAEKISVLSTLIKKT 156
L + +R+ + +R E +S L L K+T
Sbjct: 6 LAEFYERIEKTTSRIEMVSSLVELFKQT 33
>DICTYBASE|DDB_G0283857 [details] [associations]
symbol:lig3 "DNA ligase III" species:44689
"Dictyostelium discoideum" [GO:0051103 "DNA ligation involved in
DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;IBA] [GO:0003909 "DNA ligase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005634 "nucleus" evidence=IEA;IBA] [GO:0051301
"cell division" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
dictyBase:DDB_G0283857 Pfam:PF00533 GO:GO:0005524 GO:GO:0005634
GO:GO:0005694 GO:GO:0051301 GenomeReviews:CM000153_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AAFI02000057 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006289 GO:GO:0006273
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574
RefSeq:XP_638847.1 ProteinModelPortal:Q54QM4
EnsemblProtists:DDB0232266 GeneID:8624245 KEGG:ddi:DDB_G0283857
KO:K10776 OMA:INTGAKF ProtClustDB:CLSZ2736577 Uniprot:Q54QM4
Length = 1175
Score = 244 (91.0 bits), Expect = 6.8e-25, Sum P(3) = 6.8e-25
Identities = 74/234 (31%), Positives = 119/234 (50%)
Query: 250 ECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYG-HAMSKIIEQNVLVDRCILDGEMLVWDT 308
E K+DG+RIQIHK+G++ +SR+ + + I ++ + ILDGE+L+ DT
Sbjct: 281 EIKYDGERIQIHKDGNQFSCYSRNLKPLMPWKVDEVKPYIPKSTKAQQMILDGEILLMDT 340
Query: 309 SLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVV 368
++ FG+ ++ ++G D V C F FD+LY+ S+IH LKER E+L+K V
Sbjct: 341 KTSQPLPFGT---LSAHKKNGFK-DATV-CVFLFDILYLNGKSLIHLPLKERREILEKNV 395
Query: 369 KPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGS 428
K R+E + V E L A + + FKE +E G+V+KD S
Sbjct: 396 MVVKNRIE-----FSEVTIVNGASEKS-KLTAL----LNRVFKEKLE----GLVIKDAMS 441
Query: 429 KWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIXXXXXXXXXXXEVAQFLVALAER 481
++EPG R W+K+K +YI +D D++ + V FL+ ++
Sbjct: 442 EYEPGCRH--WIKIKKDYIHGMADSADLIAVGGYYGSGSMGGLVTVFLMVCYDK 493
Score = 154 (59.3 bits), Expect = 2.8e-15, Sum P(3) = 2.8e-15
Identities = 50/196 (25%), Positives = 91/196 (46%)
Query: 406 VEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIXXXXXX 464
+ + FKE +E G+V+KD S++EPG R W+K+K +YI +D D++ +
Sbjct: 423 LNRVFKEKLE----GLVIKDAMSEYEPGCRH--WIKIKKDYIHGMADSADLIAVGGYYGS 476
Query: 465 XXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPK 524
V FL+ D + + + + GL D + + K+ K
Sbjct: 477 GSMGGLVTVFLMVCY-----DKQNKIYKTVVKASGGLDDNMIAKLQPKVTSTMTKISKEV 531
Query: 525 RAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRY 584
P Y + + PD ++ ++++I I S T +S+ + YS+RFPRI ++R+
Sbjct: 532 SKIP--YWLDCPKQYAPDFIVKDIKQAMIFEIESAEFT-KSDHHTTGYSMRFPRILKIRH 588
Query: 585 DKPWHDCLDVQSFVEL 600
DK + ++ VE+
Sbjct: 589 DKDYKTATTLEELVEI 604
Score = 127 (49.8 bits), Expect = 6.8e-25, Sum P(3) = 6.8e-25
Identities = 27/87 (31%), Positives = 47/87 (54%)
Query: 124 LTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFH 183
LT+KE++ +LD L S +++ +++ L+K+ + + + II DLK+ K
Sbjct: 110 LTLKEVDQVLDSLTVSGKFEDQVKIINKLLKRCTPFDFRLVCRIIDSDLKINTGAKFFLD 169
Query: 184 EFHPDAEDLFNVTCDLKLVCEKLKDRN 210
FHP A D F +LK V EK++ +
Sbjct: 170 AFHPQAYDAFKKANNLKGVIEKIQQHD 196
Score = 57 (25.1 bits), Expect = 6.8e-25, Sum P(3) = 6.8e-25
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 656 SIFSD-MVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAA 702
SIF + ++F NV ++L + ++ GG S ++N+ TH VA+
Sbjct: 1070 SIFQECIIFLHDNVNDR---ETLKRYIIAYGGDISDSVNDKTTHLVAS 1114
Score = 38 (18.4 bits), Expect = 6.2e-23, Sum P(3) = 6.2e-23
Identities = 15/87 (17%), Positives = 36/87 (41%)
Query: 1040 EENLETRQTNVVEDLESLDRGKALQQEVVKDFG--KEKQTVRAPDIEMRERYHSKD--SE 1095
+ N T T + K ++++ + D +K + + + ++ S D
Sbjct: 617 DNNSPTTTTTTTTTTTTTTSSKLIKKQQLSDDDDDNDKDSKQQQQEPSKLKFVSDDLLDP 676
Query: 1096 TTDKQQVDAVQAMLLDMIPSLGMKNEK 1122
DK ++ + +L+ + + G+ NEK
Sbjct: 677 FNDKSDDESNKIFILNYVDNSGIWNEK 703
Score = 38 (18.4 bits), Expect = 9.4e-16, Sum P(3) = 9.4e-16
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 59 ERGSYGLKESVLANCLIDALGMSKDSADAVRLIN 92
E+ + LKE + ++D+L +S D V++IN
Sbjct: 106 EKSTLTLKE---VDQVLDSLTVSGKFEDQVKIIN 136
>UNIPROTKB|A8JH25 [details] [associations]
symbol:LIG1 "DNA ligase" species:3055 "Chlamydomonas
reinhardtii" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289
GO:GO:0006273 eggNOG:COG1793 KO:K10747 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
EMBL:DS496188 RefSeq:XP_001702891.1 UniGene:Cre.3193
ProteinModelPortal:A8JH25 STRING:A8JH25 EnsemblPlants:EDO96848
GeneID:5728431 KEGG:cre:CHLREDRAFT_133143 ProtClustDB:CLSN2924027
BioCyc:CHLAMY:CHLREDRAFT_133143-MONOMER Uniprot:A8JH25
Length = 813
Score = 215 (80.7 bits), Expect = 7.2e-25, Sum P(2) = 7.2e-25
Identities = 64/223 (28%), Positives = 106/223 (47%)
Query: 400 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLII 458
+ +V+E+E F E++E EG+++K LG +EP RS WLKLK +Y+ G DV+ +
Sbjct: 604 SRDVEELESFLNESVEAGTEGLIVKTLGDTYEPSKRSSHWLKLKKDYMEGVGDTFDVVPV 663
Query: 459 XXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFR 518
+L+A+ + PDT + IS ++GTG S+E+L + ++P+
Sbjct: 664 GAFFGKGKRTGVFGAYLLAVYD---PDTETYQTIS--KLGTGFSEEQLSQLAEAMRPH-- 716
Query: 519 KYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITSDIRTIRSEVFSAP-YS 573
P+ P +Y T + PDVW ++ K+ LSI+ + V S
Sbjct: 717 --TIPQ--PRHYY--TWDESLVPDVWFDAAVVWEVKAADLSISPRHKAALGLVDPTKGIS 770
Query: 574 LRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGG 616
+RFPR+ RVR DK D ++ + Q+ + G
Sbjct: 771 IRFPRLIRVRDDKSPEDATSAAQVADMFRNQAVIRQQKAQVSG 813
Score = 160 (61.4 bits), Expect = 7.2e-25, Sum P(2) = 7.2e-25
Identities = 47/163 (28%), Positives = 78/163 (47%)
Query: 221 GKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIH--KNGSEIHYFSRSFLDHS 278
G V+P LA K E +E K+DG+R Q+H G +H FSR+ +++
Sbjct: 439 GVPVKPMLAKATNGVGEVLEKFTDIEFTVEYKYDGERAQVHVLDGGKTVHIFSRNAENNT 498
Query: 279 -EYGHAMSKIIEQNVL---VDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSD- 333
+Y +S+I + +L VD + D E + +D + F Q ++ AR ++ D
Sbjct: 499 PKYPDIVSRI--KGLLKPEVDSIVFDAEAVAYDPEKKKILPF---QVLSTRARKDVAVDD 553
Query: 334 -RQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRL 375
+ + FAFD LY+ S++H+ L ER L + +G L
Sbjct: 554 IKVQVVLFAFDCLYLNGQSLLHKPLTERRAALYGSLTEKEGEL 596
>UNIPROTKB|Q5B061 [details] [associations]
symbol:AN6069.2 "DNA ligase" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
GO:GO:0006310 EMBL:AACD01000104 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273
eggNOG:COG1793 KO:K10747 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
OrthoDB:EOG4RV60K RefSeq:XP_663673.1 ProteinModelPortal:Q5B061
STRING:Q5B061 GeneID:2871154 KEGG:ani:AN6069.2 Uniprot:Q5B061
Length = 886
Score = 311 (114.5 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 112/438 (25%), Positives = 195/438 (44%)
Query: 218 IEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIH-------KN--GSEIH 268
++ G ++P LA + GK+ E K+DG+R QIH KN G+++
Sbjct: 476 LQPGIPIKPMLAKPTKSITEVLDRFEGKDFTCEYKYDGERAQIHYVAPDETKNYPGAQLT 535
Query: 269 Y---------FSRSFLDHSE-YGHAMSKIIEQ-NVLVDRCILDGEMLVWDTSLNRFAEFG 317
FSR+ D S+ Y ++K+ V +LD E + WD + F
Sbjct: 536 LKESAGLSAIFSRNSEDLSKKYPDVLAKLSTWIKPGVKSFVLDCETVAWDVEAKKVLPF- 594
Query: 318 SNQEIAKAARDGLSSDRQV-LCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLE 376
Q + + +D + D +V +C FAFD+L++ + + L++R +LL +P +G +
Sbjct: 595 -QQLMTRKRKDVKAEDVKVKVCVFAFDLLFLNGEPTVKKPLRQRRDLLHSSFQPIEGEFQ 653
Query: 377 TLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSK---WEPG 433
+G N++ ++++++ ++++ EG+++K L ++ +EP
Sbjct: 654 --FAQYG-NTN--------------DLEQIQTLLDDSVKASCEGLMVKMLDTEESGYEPS 696
Query: 434 DRSGKWLKLKPEYIRA-GSDLDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFI 492
RS WLK+K +Y+ G LD+L++ FL+A A TY
Sbjct: 697 KRSRNWLKVKKDYLAGVGDSLDLLVLGAYYGRGKRTSVYGAFLLA-AYNSNSQTYE---- 751
Query: 493 SFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIES----P 548
+ C +GTG S+ LD + T L P + PK P FY + K++PDVW+E
Sbjct: 752 TICNIGTGFSEAMLDELHTTLSPLV--IDRPK---P-FYSHSTVPKDQPDVWLEPRYVWE 805
Query: 549 EKSIILSITSDIRTIRSEVFSAP------YSLRFPRIDRVRYDKPWHDCLDVQSFVELVH 602
K+ L+++ + E SLRFPR +VR DK ++ E+
Sbjct: 806 VKTADLTLSPRYKAAADEFVGTTGGGGKGVSLRFPRFIKVRDDKKPEQATTTRAVAEMYR 865
Query: 603 SSNGTTQKGKEYGGLQDD 620
++G GG+ DD
Sbjct: 866 KQEAVAKEGSGKGGVDDD 883
Score = 49 (22.3 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 120 ISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEK 179
ISG IK+L D A++ ++ I + K E K+I+ + L+LG++EK
Sbjct: 358 ISG---IKKLLSAADA-ATTGKGSKGIDITKN---KGGPSEAKYIVRFLEGKLRLGLAEK 410
Query: 180 SI 181
++
Sbjct: 411 TV 412
>ASPGD|ASPL0000001880 [details] [associations]
symbol:AN6069 species:162425 "Emericella nidulans"
[GO:0033567 "DNA replication, Okazaki fragment processing"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0000723
"telomere maintenance" evidence=IEA] [GO:0007090 "regulation of S
phase of mitotic cell cycle" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0051103
"DNA ligation involved in DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:BN001301
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
HOGENOM:HOG000036006 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
EnsemblFungi:CADANIAT00006948 OMA:ETICNIG Uniprot:C8V2T3
Length = 932
Score = 311 (114.5 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 112/438 (25%), Positives = 195/438 (44%)
Query: 218 IEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIH-------KN--GSEIH 268
++ G ++P LA + GK+ E K+DG+R QIH KN G+++
Sbjct: 522 LQPGIPIKPMLAKPTKSITEVLDRFEGKDFTCEYKYDGERAQIHYVAPDETKNYPGAQLT 581
Query: 269 Y---------FSRSFLDHSE-YGHAMSKIIEQ-NVLVDRCILDGEMLVWDTSLNRFAEFG 317
FSR+ D S+ Y ++K+ V +LD E + WD + F
Sbjct: 582 LKESAGLSAIFSRNSEDLSKKYPDVLAKLSTWIKPGVKSFVLDCETVAWDVEAKKVLPF- 640
Query: 318 SNQEIAKAARDGLSSDRQV-LCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLE 376
Q + + +D + D +V +C FAFD+L++ + + L++R +LL +P +G +
Sbjct: 641 -QQLMTRKRKDVKAEDVKVKVCVFAFDLLFLNGEPTVKKPLRQRRDLLHSSFQPIEGEFQ 699
Query: 377 TLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSK---WEPG 433
+G N++ ++++++ ++++ EG+++K L ++ +EP
Sbjct: 700 --FAQYG-NTN--------------DLEQIQTLLDDSVKASCEGLMVKMLDTEESGYEPS 742
Query: 434 DRSGKWLKLKPEYIRA-GSDLDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFI 492
RS WLK+K +Y+ G LD+L++ FL+A A TY
Sbjct: 743 KRSRNWLKVKKDYLAGVGDSLDLLVLGAYYGRGKRTSVYGAFLLA-AYNSNSQTYE---- 797
Query: 493 SFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIES----P 548
+ C +GTG S+ LD + T L P + PK P FY + K++PDVW+E
Sbjct: 798 TICNIGTGFSEAMLDELHTTLSPLV--IDRPK---P-FYSHSTVPKDQPDVWLEPRYVWE 851
Query: 549 EKSIILSITSDIRTIRSEVFSAP------YSLRFPRIDRVRYDKPWHDCLDVQSFVELVH 602
K+ L+++ + E SLRFPR +VR DK ++ E+
Sbjct: 852 VKTADLTLSPRYKAAADEFVGTTGGGGKGVSLRFPRFIKVRDDKKPEQATTTRAVAEMYR 911
Query: 603 SSNGTTQKGKEYGGLQDD 620
++G GG+ DD
Sbjct: 912 KQEAVAKEGSGKGGVDDD 929
Score = 49 (22.3 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 120 ISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEK 179
ISG IK+L D A++ ++ I + K E K+I+ + L+LG++EK
Sbjct: 404 ISG---IKKLLSAADA-ATTGKGSKGIDITKN---KGGPSEAKYIVRFLEGKLRLGLAEK 456
Query: 180 SI 181
++
Sbjct: 457 TV 458
>ZFIN|ZDB-GENE-030131-8453 [details] [associations]
symbol:lig3 "ligase III, DNA, ATP-dependent"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003909 "DNA ligase activity" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 ZFIN:ZDB-GENE-030131-8453
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0008270
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
TIGRFAMs:TIGR00574 CTD:3980 HOGENOM:HOG000007653 HOVERGEN:HBG005515
OrthoDB:EOG44BB1K Gene3D:3.30.1740.10 EMBL:BC098869 IPI:IPI00618829
RefSeq:NP_001025345.2 UniGene:Dr.107348 ProteinModelPortal:Q4KM23
SMR:Q4KM23 STRING:Q4KM23 GeneID:563276 InParanoid:Q4KM23
NextBio:20884821 Uniprot:Q4KM23
Length = 752
Score = 278 (102.9 bits), Expect = 2.0e-20, P = 2.0e-20
Identities = 113/400 (28%), Positives = 180/400 (45%)
Query: 124 LTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFH 183
LTI+E++ L RL+ ++ + L ++ KK ++K I ++ DLK+ K I
Sbjct: 285 LTIQEVDASLSRLSQLTKEDDQQAELQSIAKKCTGNDLKCYIRLVKHDLKINSGAKHILD 344
Query: 184 EFHPDAEDLFNVTCDLKLVCEKLKDRNQR--------HKRQDIEVG--KAVRPQLAMRIG 233
P+A D F + +L V +++ RNQ+ K IE V+P LA
Sbjct: 345 AVDPNAYDAFKASRNLGDVIDRVL-RNQQDASNGTGPRKILSIEASLMTPVQPMLAEACK 403
Query: 234 DAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSF---LDHSEYGHAMSKIIEQ 290
A +K + E K+DG+R+Q+HKNG+ YFSRS L H + H I +
Sbjct: 404 SIEYAMKKCPNG-MYSEIKYDGERVQVHKNGNHFSYFSRSLKPVLPH-KVAHFKDFIPQA 461
Query: 291 NVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDT 350
ILD E+L+ DT ++ FG+ KAA D QV F FD +Y
Sbjct: 462 FAGGHSMILDAEVLLIDTKTSKPLPFGTLGVHKKAA----FQDAQV-GLFVFDCIYFNGV 516
Query: 351 SVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFF 410
S++ + L ER + L +E VP+ L S ++ V D E
Sbjct: 517 SLMDKPLCERRKFLHD------NMVE--VPNRILFSEMKH--------VTRAPDLAEMIT 560
Query: 411 KETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGS--DL-DVLIIXXXXXXXXX 467
+ I EG+VLKD+ +EPG R WLK+K +Y+ G+ D D++++
Sbjct: 561 R-VIREGLEGLVLKDIKGLYEPGKRH--WLKVKKDYLNEGAMADTADLVVLGAFYGKGSN 617
Query: 468 XXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELD 507
++ FL+ + P++ R++ + + G D LD
Sbjct: 618 GGIMSSFLMGCYD---PES--RKWCTVTKCSGGFDDAMLD 652
>FB|FBgn0262619 [details] [associations]
symbol:DNA-ligI "DNA ligase I" species:7227 "Drosophila
melanogaster" [GO:0003910 "DNA ligase (ATP) activity"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0051103
"DNA ligation involved in DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0043596 "nuclear replication
fork" evidence=IDA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 EMBL:AE013599 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0051301 GO:GO:0003677
GO:GO:0006260 GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1793 KO:K10747
OMA:AQVACLY GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556
HSSP:P18858 EMBL:AY051939 EMBL:BT016103 RefSeq:NP_611843.2
UniGene:Dm.19278 ProteinModelPortal:Q9W1H4 SMR:Q9W1H4 IntAct:Q9W1H4
MINT:MINT-920323 STRING:Q9W1H4 PaxDb:Q9W1H4
EnsemblMetazoa:FBtr0072132 GeneID:37791 KEGG:dme:Dmel_CG5602
UCSC:CG5602-RA CTD:37791 FlyBase:FBgn0262619 InParanoid:Q9W1H4
OrthoDB:EOG48W9H3 PhylomeDB:Q9W1H4 GenomeRNAi:37791 NextBio:805425
Bgee:Q9W1H4 Uniprot:Q9W1H4
Length = 747
Score = 248 (92.4 bits), Expect = 3.4e-17, Sum P(2) = 3.4e-17
Identities = 75/280 (26%), Positives = 139/280 (49%)
Query: 208 DRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGS-E 266
D + +R + G +RP LA H + + G ++ E K+DG+R QIH+N E
Sbjct: 351 DIKELQERCPMHPGMPLRPMLAQPTKGVHEVFERFGGMQITCEWKYDGERAQIHRNEKGE 410
Query: 267 IHYFSRSFLDHS-EYGHAMSK---IIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEI 322
I FSR+ +++ +Y +++ +++ +V I+D E++ WD + F Q +
Sbjct: 411 ISIFSRNSENNTAKYPDLIARSTALLKGDV--KSYIIDSEIVAWDVERKQILPF---QVL 465
Query: 323 AKAARDGLSSDR-QV-LCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVP 380
+ R + + +V +C + FD+LY+ T+++ ++L ER +LL LE
Sbjct: 466 STRKRKNVDIEEIKVQVCVYIFDLLYINGTALVTKNLSERRKLL----------LEHF-- 513
Query: 381 DHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSK--WEPGDRSGK 438
V + + +L +++DEV++F +E+I+ EG+++K L + +E RS
Sbjct: 514 -----QEVEGEWKFATALDTNDIDEVQQFLEESIKGNCEGLMVKTLDEEATYEIAKRSRN 568
Query: 439 WLKLKPEYI-RAGSDLDVLIIXXXXXXXXXXXEVAQFLVA 477
WLKLK +Y+ G LD+++I FL+A
Sbjct: 569 WLKLKKDYLSNVGDSLDLVVIGGYKGKGRRTGTYGGFLLA 608
Score = 193 (73.0 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 67/234 (28%), Positives = 107/234 (45%)
Query: 397 SLVAHNVDEVEKFFKETIENRDEGIVLKDLGSK--WEPGDRSGKWLKLKPEYI-RAGSDL 453
+L +++DEV++F +E+I+ EG+++K L + +E RS WLKLK +Y+ G L
Sbjct: 525 ALDTNDIDEVQQFLEESIKGNCEGLMVKTLDEEATYEIAKRSRNWLKLKKDYLSNVGDSL 584
Query: 454 DVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKL 513
D+++I FL+A DT + S C++GTG +DE+L
Sbjct: 585 DLVVIGGYKGKGRRTGTYGGFLLACY-----DTENEEYQSICKIGTGFTDEDLQTH---- 635
Query: 514 KPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITSDIRTIRSEVFS 569
+ K+ A S+Y+ + S E PD W E + K LS++ R V
Sbjct: 636 SEFLGKHV--TSAAKSYYRY-DPSLE-PDHWFEPVQVWEVKCADLSLSPIHRAAIGIVDG 691
Query: 570 AP-YSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGT--TQKGKEYGGLQDD 620
SLRFPR R+R DK + D + S + QK ++D+
Sbjct: 692 ERGISLRFPRFIRIRDDKNSENATDANQVAHMYQSQDQVKNNQKSSTQMEMEDE 745
Score = 51 (23.0 bits), Expect = 3.4e-17, Sum P(2) = 3.4e-17
Identities = 15/80 (18%), Positives = 41/80 (51%)
Query: 103 GNFPMVAAEV-LQRRQGMISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEM 161
G+ +VA + + +R L ++++ L +A ++ K+ ++ + + E
Sbjct: 215 GDLGIVAEQSRVSQRMMFQPAPLNVRDVFRKLREIAKLSGQS-KMDLVYNMFVACRSSEA 273
Query: 162 KWIIMIILKDLKLGISEKSI 181
++ I ++ L++GI+E+S+
Sbjct: 274 RFFIRSLIGKLRIGIAEQSL 293
>GENEDB_PFALCIPARUM|MAL13P1.22 [details] [associations]
symbol:MAL13P1.22 "DNA ligase 1" species:5833
"Plasmodium falciparum" [GO:0005657 "replication fork"
evidence=ISS] [GO:0006266 "DNA ligation" evidence=ISS] [GO:0006273
"lagging strand elongation" evidence=ISS] [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524 GO:GO:0003677
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006266 GO:GO:0005657 EMBL:AL844509 GenomeReviews:AL844509_GR
GO:GO:0006273 HOGENOM:HOG000036006 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GO:GO:0020011 OMA:ETICNIG RefSeq:XP_001349768.1
ProteinModelPortal:Q8IES4 EnsemblProtists:MAL13P1.22:mRNA
GeneID:813777 KEGG:pfa:MAL13P1.22 EuPathDB:PlasmoDB:PF3D7_1304100
ProtClustDB:CLSZ2432498 Uniprot:Q8IES4
Length = 912
Score = 234 (87.4 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 83/347 (23%), Positives = 160/347 (46%)
Query: 127 KELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLK-LGISEKSIFHEF 185
+ ++ L++ + + K ++ LI+K + + + K+LK + E + F
Sbjct: 433 ENMDSLINEIRIRNEKINKPNIFYNLIEKVGDTRL---LPLFFKELKNIYCEENNDIDIF 489
Query: 186 HPDAEDLFNVTCDL---KLVCEKL---KDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAW 239
+ + + C+L +++ + L D N K+ ++ G V+P LA
Sbjct: 490 ECMEKSVKSALCELPNIEIIIQNLLNGDDMNTLSKKCTVKTGIPVQPMLAKPTKGVQEVL 549
Query: 240 RKLHGKEVVIECKFDGDRIQIHK-NGSEIHYFSRSFLDHSEYGHAMSKIIEQNV--LVDR 296
+ + E K+DG+R QIH + I FSR+ +E + +II+ + V
Sbjct: 550 DRFNNVTFTCEYKYDGERAQIHYIDKDNIKIFSRNLETMTEKYPDVIQIIKDQIGENVKE 609
Query: 297 CILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDR-QV-LCYFAFDVLYVGDTSVIH 354
CI+D E++ +D N+ F Q + R + + +V +C F FD++ VI
Sbjct: 610 CIIDSEVVAYDIVNNKILPF---QVLTTRKRKDVDIENIKVKVCLFPFDLICCNGIPVIK 666
Query: 355 QSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETI 414
+ L R +LL ++K G L + +S + +N+++++ F ++ I
Sbjct: 667 EPLAVRRKLLYSLLKSKDGVLS-----YATHSEM------------NNIEDIDMFLQDAI 709
Query: 415 ENRDEGIVLKDL--GSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLII 458
EN EG+++K L + +EP RS WLK+K +Y+ SD +D++ I
Sbjct: 710 ENNCEGLMVKTLVENASYEPSRRSLNWLKVKKDYVEGLSDSVDLVPI 756
Score = 198 (74.8 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 62/221 (28%), Positives = 107/221 (48%)
Query: 401 HNVDEVEKFFKETIENRDEGIVLKDL--GSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLI 457
+N+++++ F ++ IEN EG+++K L + +EP RS WLK+K +Y+ SD +D++
Sbjct: 696 NNIEDIDMFLQDAIENNCEGLMVKTLVENASYEPSRRSLNWLKVKKDYVEGLSDSVDLVP 755
Query: 458 IXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYF 517
I F++A A ++ F + C+ GTG SDE L + L
Sbjct: 756 IAGYYGKGKRSGVYGAFVLA-----AYNSETENFQTVCKAGTGFSDEILSTLYETLSEKI 810
Query: 518 RKYEYPKRAPPSFYQVTNNSKERPDVWIES----PEKSIILSITSDIRTIRSEVFSAP-- 571
P + S+Y+V++ K PDVW ++ K+ LS+ S + T +++
Sbjct: 811 ----IPNKK--SYYEVSD--KLNPDVWFDAHYVWEVKAADLSL-SPVHTAAIGIYADDKG 861
Query: 572 YSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGK 612
LRFPR R+R DK Q V+ + + ++ K K
Sbjct: 862 IGLRFPRFLRLREDKNAEQATTTQQIVDF-YEAQFSSNKNK 901
Score = 60 (26.2 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 14/61 (22%), Positives = 34/61 (55%)
Query: 124 LTIKEL-NDL--LDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS 180
LTI+ + ++L + L S ++ +K V+ L+ E K+I+ + + L++G++ +
Sbjct: 292 LTIQSVFHELKSIPNLIGSNSQQKKREVIKKLLVSAKTSEAKYIVRFLQQRLRIGVNSAT 351
Query: 181 I 181
+
Sbjct: 352 V 352
>UNIPROTKB|Q8IES4 [details] [associations]
symbol:PfLigI "DNA ligase" species:36329 "Plasmodium
falciparum 3D7" [GO:0005657 "replication fork" evidence=ISS]
[GO:0006266 "DNA ligation" evidence=ISS] [GO:0006273 "lagging
strand elongation" evidence=ISS] [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524 GO:GO:0003677
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006266 GO:GO:0005657 EMBL:AL844509 GenomeReviews:AL844509_GR
GO:GO:0006273 HOGENOM:HOG000036006 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GO:GO:0020011 OMA:ETICNIG RefSeq:XP_001349768.1
ProteinModelPortal:Q8IES4 EnsemblProtists:MAL13P1.22:mRNA
GeneID:813777 KEGG:pfa:MAL13P1.22 EuPathDB:PlasmoDB:PF3D7_1304100
ProtClustDB:CLSZ2432498 Uniprot:Q8IES4
Length = 912
Score = 234 (87.4 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 83/347 (23%), Positives = 160/347 (46%)
Query: 127 KELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLK-LGISEKSIFHEF 185
+ ++ L++ + + K ++ LI+K + + + K+LK + E + F
Sbjct: 433 ENMDSLINEIRIRNEKINKPNIFYNLIEKVGDTRL---LPLFFKELKNIYCEENNDIDIF 489
Query: 186 HPDAEDLFNVTCDL---KLVCEKL---KDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAW 239
+ + + C+L +++ + L D N K+ ++ G V+P LA
Sbjct: 490 ECMEKSVKSALCELPNIEIIIQNLLNGDDMNTLSKKCTVKTGIPVQPMLAKPTKGVQEVL 549
Query: 240 RKLHGKEVVIECKFDGDRIQIHK-NGSEIHYFSRSFLDHSEYGHAMSKIIEQNV--LVDR 296
+ + E K+DG+R QIH + I FSR+ +E + +II+ + V
Sbjct: 550 DRFNNVTFTCEYKYDGERAQIHYIDKDNIKIFSRNLETMTEKYPDVIQIIKDQIGENVKE 609
Query: 297 CILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDR-QV-LCYFAFDVLYVGDTSVIH 354
CI+D E++ +D N+ F Q + R + + +V +C F FD++ VI
Sbjct: 610 CIIDSEVVAYDIVNNKILPF---QVLTTRKRKDVDIENIKVKVCLFPFDLICCNGIPVIK 666
Query: 355 QSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETI 414
+ L R +LL ++K G L + +S + +N+++++ F ++ I
Sbjct: 667 EPLAVRRKLLYSLLKSKDGVLS-----YATHSEM------------NNIEDIDMFLQDAI 709
Query: 415 ENRDEGIVLKDL--GSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLII 458
EN EG+++K L + +EP RS WLK+K +Y+ SD +D++ I
Sbjct: 710 ENNCEGLMVKTLVENASYEPSRRSLNWLKVKKDYVEGLSDSVDLVPI 756
Score = 198 (74.8 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 62/221 (28%), Positives = 107/221 (48%)
Query: 401 HNVDEVEKFFKETIENRDEGIVLKDL--GSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLI 457
+N+++++ F ++ IEN EG+++K L + +EP RS WLK+K +Y+ SD +D++
Sbjct: 696 NNIEDIDMFLQDAIENNCEGLMVKTLVENASYEPSRRSLNWLKVKKDYVEGLSDSVDLVP 755
Query: 458 IXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYF 517
I F++A A ++ F + C+ GTG SDE L + L
Sbjct: 756 IAGYYGKGKRSGVYGAFVLA-----AYNSETENFQTVCKAGTGFSDEILSTLYETLSEKI 810
Query: 518 RKYEYPKRAPPSFYQVTNNSKERPDVWIES----PEKSIILSITSDIRTIRSEVFSAP-- 571
P + S+Y+V++ K PDVW ++ K+ LS+ S + T +++
Sbjct: 811 ----IPNKK--SYYEVSD--KLNPDVWFDAHYVWEVKAADLSL-SPVHTAAIGIYADDKG 861
Query: 572 YSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGK 612
LRFPR R+R DK Q V+ + + ++ K K
Sbjct: 862 IGLRFPRFLRLREDKNAEQATTTQQIVDF-YEAQFSSNKNK 901
Score = 60 (26.2 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 14/61 (22%), Positives = 34/61 (55%)
Query: 124 LTIKEL-NDL--LDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS 180
LTI+ + ++L + L S ++ +K V+ L+ E K+I+ + + L++G++ +
Sbjct: 292 LTIQSVFHELKSIPNLIGSNSQQKKREVIKKLLVSAKTSEAKYIVRFLQQRLRIGVNSAT 351
Query: 181 I 181
+
Sbjct: 352 V 352
>SGD|S000002323 [details] [associations]
symbol:CDC9 "DNA ligase found in the nucleus and
mitochondria" species:4932 "Saccharomyces cerevisiae" [GO:0006260
"DNA replication" evidence=IEA] [GO:0000278 "mitotic cell cycle"
evidence=IMP] [GO:0006310 "DNA recombination" evidence=IEA;IMP]
[GO:0003910 "DNA ligase (ATP) activity" evidence=IEA;IDA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0006284 "base-excision
repair" evidence=IMP] [GO:0006266 "DNA ligation" evidence=IMP;IDA]
[GO:0006273 "lagging strand elongation" evidence=IDA;IMP]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IMP] [GO:0051301 "cell division" evidence=IEA] [GO:0005657
"replication fork" evidence=NAS] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005739 "mitochondrion" evidence=IEA;IMP;IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0003909 "DNA ligase
activity" evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 SGD:S000002323 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0051301 GO:GO:0046872
GO:GO:0006284 GO:GO:0003677 EMBL:BK006938 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:Z67750
GO:GO:0006289 GO:GO:0000278 GO:GO:0005657 GO:GO:0006273
eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747 OMA:AQVACLY
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556 OrthoDB:EOG4RV60K
EMBL:X03246 EMBL:Z74212 EMBL:AY723764 EMBL:X68020 PIR:S61049
RefSeq:NP_010117.1 PDB:2OD8 PDBsum:2OD8 ProteinModelPortal:P04819
SMR:P04819 DIP:DIP-5630N IntAct:P04819 MINT:MINT-499551
STRING:P04819 PaxDb:P04819 PeptideAtlas:P04819 EnsemblFungi:YDL164C
GeneID:851391 KEGG:sce:YDL164C CYGD:YDL164c
EvolutionaryTrace:P04819 NextBio:968546 Genevestigator:P04819
GermOnline:YDL164C Uniprot:P04819
Length = 755
Score = 225 (84.3 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 70/215 (32%), Positives = 103/215 (47%)
Query: 398 LVAHNVDEVEKFFKETIENRDEGIVLKDL-G--SKWEPGDRSGKWLKLKPEYIRA-GSDL 453
+ +N+DE++KF E++ + EG+++K L G S +EP RS WLKLK +Y+ G L
Sbjct: 550 ITTNNLDELQKFLDESVNHSCEGLMVKMLEGPESHYEPSKRSRNWLKLKKDYLEGVGDSL 609
Query: 454 DVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKL 513
D+ ++ FL+ + DT F + C++GTG SDE L + +L
Sbjct: 610 DLCVLGAYYGRGKRTGTYGGFLLGCYNQ---DT--GEFETCCKIGTGFSDEMLQLLHDRL 664
Query: 514 KPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSIT---SDIRTIRSEVFSA 570
P + PK +F V ++S E PDVW E +L+ S I S F
Sbjct: 665 TPTI--IDGPKA---TF--VFDSSAE-PDVWFEPTTLFEVLTADLSLSPIYKAGSATFDK 716
Query: 571 PYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSN 605
SLRFPR R+R DK D VEL + +
Sbjct: 717 GVSLRFPRFLRIREDKGVEDATSSDQIVELYENQS 751
Score = 193 (73.0 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 69/246 (28%), Positives = 113/246 (45%)
Query: 221 GKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHK-NGSEIHYFSRSFLDHSE 279
G ++P LA + + G+ E K+DG+R Q+H N + +SR+ + +E
Sbjct: 388 GIPLKPMLAKPTKAINEVLDRFQGETFTSEYKYDGERAQVHLLNDGTMRIYSRNGENMTE 447
Query: 280 -YGHA-MSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLS-SDRQV 336
Y ++ I+ ILD E + WD + F Q ++ R + +D +V
Sbjct: 448 RYPEINITDFIQDLDTTKNLILDCEAVAWDKDQGKILPF---QVLSTRKRKDVELNDVKV 504
Query: 337 -LCYFAFDVLYVGDTSVIHQSLKERHELLQKVVK--PSKGRLETLVPDHGLNSHVRPQGE 393
+C FAFD+L D +I++SLKER E L KV K P + + T + + L+ + E
Sbjct: 505 KVCLFAFDILCYNDERLINKSLKERREYLTKVTKVVPGEFQYATQITTNNLDELQKFLDE 564
Query: 394 PCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSD 452
V H+ E + +E + S +EP RS WLKLK +Y+ G
Sbjct: 565 S----VNHSC---EGLMVKMLEGPE---------SHYEPSKRSRNWLKLKKDYLEGVGDS 608
Query: 453 LDVLII 458
LD+ ++
Sbjct: 609 LDLCVL 614
Score = 59 (25.8 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 26/128 (20%), Positives = 58/128 (45%)
Query: 57 DRERG-SYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQR 115
D E G GL E++L + + G S ++L ++ G + G M A V
Sbjct: 200 DYEAGLELGLGENLLMKTISETCGKSMSQ---IKL-KYKDIG---DLGEIAMGARNVQPT 252
Query: 116 --RQGMISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLK 173
+ ++ G K L + + +++ +K+ ++ ++ E K++I + L+
Sbjct: 253 MFKPKPLTVGEVFKNLRAIA-KTQGKDSQLKKMKLIKRMLTACKGIEAKFLIRSLESKLR 311
Query: 174 LGISEKSI 181
+G++EK++
Sbjct: 312 IGLAEKTV 319
>CGD|CAL0006047 [details] [associations]
symbol:orf19.6155 species:5476 "Candida albicans" [GO:0003910
"DNA ligase (ATP) activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000278
"mitotic cell cycle" evidence=IEA] [GO:0006266 "DNA ligation"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0007090 "regulation of S phase of mitotic cell
cycle" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006273 "lagging strand elongation" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 CGD:CAL0006047 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 EMBL:AACQ01000251
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG1793 KO:K10747 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
RefSeq:XP_710637.1 ProteinModelPortal:Q59LP7 STRING:Q59LP7
GeneID:3647757 KEGG:cal:CaO19.6155 Uniprot:Q59LP7
Length = 770
Score = 220 (82.5 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 68/197 (34%), Positives = 100/197 (50%)
Query: 402 NVDEVEKFFKETIENRDEGIVLKDL-GSK--WEPGDRSGKWLKLKPEYIRA-GSDLDVLI 457
N++ +++F ++I++ EG+++K L GS+ +EP RS WLKLK +Y+ G LD+++
Sbjct: 566 NLEVLQQFLDQSIKDSCEGLMVKMLNGSESFYEPSKRSRNWLKLKKDYLEGVGDSLDLVV 625
Query: 458 IXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYF 517
I FL+A + D + C++GTG SDE+L + KL P
Sbjct: 626 IGAYNGKGKRTGTYGGFLLASYNEDSGDLE-----TCCKIGTGFSDEDLLNLYNKLHP-- 678
Query: 518 RKYEYPKRAPPSFYQVTNNSKERPDVWIE-SPEKSII---LSITSDIRTIRSEVFSAPYS 573
+ PK F TNNS PDVW E S ++ LS++ +T E F S
Sbjct: 679 TEIASPKNY---FVYDTNNSNAVPDVWFEPSMLFEVLTADLSLSPIYKTGHQE-FGKGVS 734
Query: 574 LRFPRIDRVRYDKPWHD 590
LRFPR RVR DK D
Sbjct: 735 LRFPRFIRVRDDKGIED 751
Score = 220 (82.5 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 74/267 (27%), Positives = 128/267 (47%)
Query: 221 GKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIH--KNGSEIHYFSRSFLDHS 278
G ++P LA + +E E K+DG R Q+H +GS I FSR+ D +
Sbjct: 398 GIPLKPMLANPTKSIGEVLDRFQNEEFTCEYKYDGVRAQVHILSDGS-IKVFSRNLEDMT 456
Query: 279 EYGHAMSKIIEQNVLVDRCI---LDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQ 335
+ + I +Q + I LD E + WD ++ F + + +D D +
Sbjct: 457 QTYPDLISIGKQFAVSGNTISMILDCEAVAWDREDHKILPF--QKLTTRKRKDVNEEDIK 514
Query: 336 V-LCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEP 394
V +C FAFD+LY + S++ +SL ER +++Q+ + P + R + NS
Sbjct: 515 VQICLFAFDLLYYDNESLLPKSLAERRKIMQENLSPIEDRFQFAT---ATNS-------- 563
Query: 395 CWSLVAHNVDEVEKFFKETIENRDEGIVLKDL-GSK--WEPGDRSGKWLKLKPEYIRA-G 450
+ N++ +++F ++I++ EG+++K L GS+ +EP RS WLKLK +Y+ G
Sbjct: 564 -----SSNLEVLQQFLDQSIKDSCEGLMVKMLNGSESFYEPSKRSRNWLKLKKDYLEGVG 618
Query: 451 SDLDVLIIXXXXXXXXXXXEVAQFLVA 477
LD+++I FL+A
Sbjct: 619 DSLDLVVIGAYNGKGKRTGTYGGFLLA 645
Score = 61 (26.5 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 15/55 (27%), Positives = 33/55 (60%)
Query: 130 NDL-LDRLASSENRAEKISVLSTLIK--KTNAQEMKWIIMIILKDLKLGISEKSI 181
N L + + E++++KIS++ ++ + + E K++I + L++G +EKSI
Sbjct: 279 NSLKIAKSTGKESQSKKISIIKQMLTACQMKSSEAKFLIRSLQGKLRIGSAEKSI 333
>FB|FBgn0038035 [details] [associations]
symbol:lig3 "DNA ligase III" species:7227 "Drosophila
melanogaster" [GO:0003910 "DNA ligase (ATP) activity"
evidence=ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0005739
"mitochondrion" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
EMBL:AE014297 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0003677 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0006289 GO:GO:0006273 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K10776
CTD:3980 GeneTree:ENSGT00700000104500 FlyBase:FBgn0038035
EMBL:BT120103 RefSeq:NP_650187.2 UniGene:Dm.13380 SMR:Q9VG84
IntAct:Q9VG84 MINT:MINT-1007361 STRING:Q9VG84
EnsemblMetazoa:FBtr0082600 GeneID:41518 KEGG:dme:Dmel_CG17227
InParanoid:Q9VG84 OMA:NEDNKLD GenomeRNAi:41518 NextBio:824218
Uniprot:Q9VG84
Length = 806
Score = 247 (92.0 bits), Expect = 3.7e-15, Sum P(3) = 3.7e-15
Identities = 103/409 (25%), Positives = 182/409 (44%)
Query: 124 LTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFH 183
L ++E+ ++L L E+ +L L K +++ I ++ DL++ + I
Sbjct: 143 LYLQEVEEMLLHLVERTKEDEQTDLLQKLCSKATDLDLRTFIRLVKHDLRINARARHILD 202
Query: 184 EFHPDAEDLFNVTCDLKLVCEKL---KDRN------QRHKRQD---IEVGKAVRPQLAMR 231
F PDA + + DL + E+ +++N ++ K+ I+V + P LA
Sbjct: 203 AFGPDAYPAYQSSRDLVAIVEQFATKENKNYASSPVKKTKKTSSSAIQVMTPISPMLASP 262
Query: 232 IGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSF---LDHSEYGHAMSKII 288
A++K + E K+DG+R+QIHK G++ +FSR+ +DH A+ K I
Sbjct: 263 CKSVEDAFKK-SPTGLYSEIKYDGERVQIHKQGNDFKFFSRNLKPVVDHKI--RALKKYI 319
Query: 289 EQNVLVD-RCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFD-VLY 346
Q ILD E+++ DT FGS A + +C F FD +LY
Sbjct: 320 PQAFPGGGEMILDSEIILVDTDTGALLPFGS-----LGAHKKQTFANAAVCLFVFDCILY 374
Query: 347 VGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEV 406
G+ + ++R E+L++ ++P K SHV+ E S E+
Sbjct: 375 DGE-DLTQLPFRKRREILEQNIQPIK-------------SHVQ-LSE---SEFLKTTREL 416
Query: 407 EKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAG--SDL-DVLIIXXXXX 463
+ EG+VLK S ++PG R+ WLK+K +Y+ G +D D++++
Sbjct: 417 AAMTARVLHANLEGVVLKSPTSTYQPGKRN--WLKVKKDYLFDGKMADTADLVVLGAWYG 474
Query: 464 XXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTK 512
++ FL+ D + R + + +V +GL D+ +A V K
Sbjct: 475 SGKKGGTLSIFLMGCY-----DAFGRLWKTVTKVHSGL-DDATNAEVHK 517
Score = 41 (19.5 bits), Expect = 3.7e-15, Sum P(3) = 3.7e-15
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 602 HSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPS 641
+ SNG+ + + G D+ S RK K S+ PS
Sbjct: 641 NQSNGSKKLKRSNTGSDDEDGAPVLSKRKESKAIRSLSPS 680
Score = 38 (18.4 bits), Expect = 3.7e-15, Sum P(3) = 3.7e-15
Identities = 7/40 (17%), Positives = 17/40 (42%)
Query: 864 VNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQK 903
V + + E+ + L+ + + WL+ CL + +
Sbjct: 756 VFYANTNEALDLEKLRTLYRRSCRHLNVSWLQSCLDTQSR 795
>POMBASE|SPAC20G8.01 [details] [associations]
symbol:cdc17 "ATP-dependent DNA ligase Cdc17"
species:4896 "Schizosaccharomyces pombe" [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003909 "DNA ligase activity" evidence=IMP;IDA] [GO:0003910
"DNA ligase (ATP) activity" evidence=IGI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0006284
"base-excision repair" evidence=ISS] [GO:0006289
"nucleotide-excision repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0007090 "regulation of S phase of
mitotic cell cycle" evidence=IMP] [GO:0033567 "DNA replication,
Okazaki fragment processing" evidence=IMP] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=TAS] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 PomBase:SPAC20G8.01 GO:GO:0005739
GO:GO:0005524 EMBL:CU329670 GO:GO:0051301 GenomeReviews:CU329670_GR
GO:GO:0046872 GO:GO:0006284 GO:GO:0003677 GO:GO:0007049
GO:GO:0043596 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0000723 GO:GO:0006289 GO:GO:0007090
GO:GO:0043137 eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747
OMA:AQVACLY GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 EMBL:X05107 PIR:A29066
RefSeq:NP_593318.2 ProteinModelPortal:P12000 STRING:P12000
EnsemblFungi:SPAC20G8.01.1 GeneID:2541849 KEGG:spo:SPAC20G8.01
OrthoDB:EOG4RV60K NextBio:20802937 Uniprot:P12000
Length = 768
Score = 226 (84.6 bits), Expect = 8.7e-15, P = 8.7e-15
Identities = 71/232 (30%), Positives = 112/232 (48%)
Query: 402 NVDEVEKFFKETIENRDEGIVLKDL-G--SKWEPGDRSGKWLKLKPEYIRA-GSDLDVLI 457
+++ +E+F +E++++ EG+++K L G S +EP RS WLK+K +Y+ G LD+++
Sbjct: 551 SIESIEEFLEESVKDSCEGLMVKMLEGPDSHYEPSKRSRHWLKVKKDYLSGVGDSLDLIV 610
Query: 458 IXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYF 517
I FL+ + PDT + S C++GTG S+E L+ +LK
Sbjct: 611 IGAYYGKGKRTSVYGAFLLGCYD---PDTETVQ--SICKLGTGFSEEHLETFYNQLKDIV 665
Query: 518 RKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAP--Y--- 572
K+ FY ++ +PDVW E P K + + +D+ S V+ A Y
Sbjct: 666 ----ISKKK--DFYAHSDVPAHQPDVWFE-P-KYLWEVLAADLSL--SPVYKAAIGYVQE 715
Query: 573 ----SLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDD 620
SLRFPR R+R DK W D + E S +QK KE +D
Sbjct: 716 DKGISLRFPRFIRIREDKSWEDATTSEQVSEFYRSQVAYSQKEKEGSPAAED 767
Score = 191 (72.3 bits), Expect = 5.2e-11, P = 5.2e-11
Identities = 101/441 (22%), Positives = 174/441 (39%)
Query: 115 RRQGMISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKL 174
++ +SG + ++ RL SS AE ++ L K Q + I++ L +
Sbjct: 269 KKIAQMSGNQSQNRKIGVIKRLLSSCEGAEPKYLIRALEGKLRLQLAEKTILVALANATA 328
Query: 175 GI-SEKS---IFHEFHPDAEDLF-NVTCDLK---LVCEKLKDRNQRHKRQDIEV--GKAV 224
++K+ + + + E + +V C L L+ L + R+ ++ G
Sbjct: 329 QYHADKNGEKLSQQDRIEGEQILRDVYCQLPSYDLIVPHLIEHGLGTLRETCKLTPGIPT 388
Query: 225 RPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIH-KNGSEIHYFSRSFLDHSEYGHA 283
+P LA E K+DG+R Q+H + + FSR+ + S
Sbjct: 389 KPMLAKPTKQISEVLNTFDQAAFTCEYKYDGERAQVHFTEDGKFYVFSRNSENMSVRYPD 448
Query: 284 MSKIIEQNVLVDR--CILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLS-SDRQV-LCY 339
+S + + D ILD E + WD N+ F Q++A R + D +V C
Sbjct: 449 ISVSVSKWKKPDARSFILDCEAVGWDRDENKILPF---QKLATRKRKDVKIGDIKVRACL 505
Query: 340 FAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLV 399
FAFD+LY+ ++ L ER +LL + +PS G + H + E +
Sbjct: 506 FAFDILYLNGQPLLETPLNERRKLLYSMFQPSTG--DFTFAKHSDQKSI----ESIEEFL 559
Query: 400 AHNV-DEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLI 457
+V D E + +E D S +EP RS WLK+K +Y+ G LD+++
Sbjct: 560 EESVKDSCEGLMVKMLEGPD---------SHYEPSKRSRHWLKVKKDYLSGVGDSLDLIV 610
Query: 458 IXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEEL------DAVVT 511
I FL+ + PDT + I G E D V++
Sbjct: 611 IGAYYGKGKRTSVYGAFLLGCYD---PDTETVQSICKLGTGFSEEHLETFYNQLKDIVIS 667
Query: 512 KLKPYFRKYEYPKRAPPSFYQ 532
K K ++ + P P +++
Sbjct: 668 KKKDFYAHSDVPAHQPDVWFE 688
>UNIPROTKB|Q7RYJ3 [details] [associations]
symbol:NCU06481 "DNA ligase" species:367110 "Neurospora
crassa OR74A" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289
GO:GO:0006273 eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OrthoDB:EOG4RV60K EMBL:AABX02000027 OMA:ETICNIG
RefSeq:XP_957121.1 UniGene:Ncr.25681 ProteinModelPortal:Q7RYJ3
STRING:Q7RYJ3 EnsemblFungi:EFNCRT00000006215 GeneID:3873294
KEGG:ncr:NCU06481 Uniprot:Q7RYJ3
Length = 923
Score = 214 (80.4 bits), Expect = 1.0e-14, Sum P(3) = 1.0e-14
Identities = 69/237 (29%), Positives = 108/237 (45%)
Query: 397 SLVAHNVDEVEKFFKETIENRDEGIVLKDLG---SKWEPGDRSGKWLKLKPEYIRA-GSD 452
S+ +DE++ F E+++ EG+++K L S +EP RS WLK+K +Y+ G
Sbjct: 698 SMDGQELDEIQSFLDESVKAGCEGLMVKMLDGAESGYEPSKRSRNWLKIKKDYLAGIGDS 757
Query: 453 LDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTK 512
LD++++ FL+A P+ DTY + C +GTG SDE L + +
Sbjct: 758 LDLVVLGAYHGKGKRTSVFGAFLLA-CYNPSTDTYE----TVCNIGTGFSDEVLQELHSS 812
Query: 513 LKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE-----KSIILSITSDIRTIRSEV 567
L P + PK P FY ++ + +PDVW E P+ K+ L+++ + E
Sbjct: 813 LSPII--IDRPK---P-FYAHSSGGQHQPDVWFE-PKYVWEVKTADLTLSPRYKAGMKEG 865
Query: 568 FSAP----YSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDD 620
SLRFPR +VR DK + + E+ GK G DD
Sbjct: 866 VDPSGEKGISLRFPRFIKVRDDKKPDEATTSRMVAEMYRKQESV---GKNKGPAVDD 919
Score = 180 (68.4 bits), Expect = 4.2e-11, Sum P(3) = 4.2e-11
Identities = 68/245 (27%), Positives = 112/245 (45%)
Query: 252 KFDGDRIQIHKN--GSEIH-YFSRSFLDHSE-YGHAMSKI---IEQNVLVDRCILDGEML 304
K +GD Q+ G + FSR+ D S+ Y ++K+ +++ +LD E +
Sbjct: 566 KSEGDLSQVASKDTGKGVAAIFSRNSEDLSQKYPDVLAKLPTWVKEGT--KSFVLDCESV 623
Query: 305 VWDTSLNRFAEFGSNQEIAKAARDGLSSDRQV-LCYFAFDVLYVGDTSVIHQSLKERHEL 363
WDT + F Q + + +D D +V +C FAFD+LY+ +V+ +SL+ER EL
Sbjct: 624 AWDTVDKKVLPF--QQLMTRKKKDVKLEDVKVKVCVFAFDLLYLNGQAVVEKSLRERREL 681
Query: 364 LQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVL 423
L++ KP +G G + E + +DE K E + + +L
Sbjct: 682 LREAFKPVEGEFAFATSMDG-----QELDE-----IQSFLDESVKAGCEGLMVK----ML 727
Query: 424 KDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLIIXXXXXXXXXXXEVAQFLVALAERP 482
S +EP RS WLK+K +Y+ G LD++++ FL+A P
Sbjct: 728 DGAESGYEPSKRSRNWLKIKKDYLAGIGDSLDLVVLGAYHGKGKRTSVFGAFLLA-CYNP 786
Query: 483 APDTY 487
+ DTY
Sbjct: 787 STDTY 791
Score = 56 (24.8 bits), Expect = 1.0e-14, Sum P(3) = 1.0e-14
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 221 GKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIH 261
G ++P LA + G+ E K+DG+R QIH
Sbjct: 518 GVPLKPMLANPTKAITEVLDRFEGQTFTCEYKYDGERAQIH 558
Score = 56 (24.8 bits), Expect = 1.0e-14, Sum P(3) = 1.0e-14
Identities = 16/64 (25%), Positives = 33/64 (51%)
Query: 119 MISGGLTIKELNDLLDRLASSE-NRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGIS 177
M G K+++ + L++++ N K+ + K E K+I+ + L+LG++
Sbjct: 392 MTGTGAQQKKVDGIKKLLSAADANSTGKVDITKD---KGGPSEAKFIVRFLEGKLRLGLA 448
Query: 178 EKSI 181
EKS+
Sbjct: 449 EKSV 452
Score = 40 (19.1 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 207 KDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWR 240
+D +++ + E K ++ LA ++ D + W+
Sbjct: 226 EDEDEKTEAVAKEARKVIQTTLATKVKDPYPDWK 259
>UNIPROTKB|Q7RPC6 [details] [associations]
symbol:PY01533 "DNA ligase" species:73239 "Plasmodium
yoelii yoelii" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 EMBL:AABL01000407 RefSeq:XP_729309.1
ProteinModelPortal:Q7RPC6 STRING:Q7RPC6 GeneID:3801864
KEGG:pyo:PY01533 EuPathDB:PlasmoDB:PY01533 Uniprot:Q7RPC6
Length = 826
Score = 218 (81.8 bits), Expect = 7.1e-14, P = 7.1e-14
Identities = 83/347 (23%), Positives = 159/347 (45%)
Query: 124 LTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS-IF 182
L + N+L+ + R K ++ + K+ + + + I LK+ I+ S IF
Sbjct: 346 LDTDQFNNLVKSIKIRNERMSKPNLFFNIGKEGDTRLLP--IFKELKNAYCDINNDSDIF 403
Query: 183 HEFHPDAEDLFNVTCDLKLVCEKL---KDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAW 239
+ +++++ + L D N K+ ++ G V+P LA
Sbjct: 404 ECMEKSVKSALCELPNIEMIIQNLLSGDDMNVLMKKCTVKTGVPVQPMLAKPTKGIQEVL 463
Query: 240 RKLHGKEVVIECKFDGDRIQIHK-NGSEIHYFSRSFLDHSEYGHAMSKIIEQNVL--VDR 296
+ + E K+DG+R QIH + I FSR+ +E + +I++ ++ V
Sbjct: 464 DRFNNVTFTCEYKYDGERAQIHYIDKDNIKIFSRNLETMTEKYPDVIQIVKDQIMPGVTE 523
Query: 297 CILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDR-QV-LCYFAFDVLYVGDTSVIH 354
I+D E++ +D + F Q + R + + +V +C F FD++ VI
Sbjct: 524 SIIDSEVVAYDIENKKILPF---QILTTRKRKDVDIENIKVKICLFPFDLICCNGVPVIK 580
Query: 355 QSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETI 414
+ L+ R +LL +++ +G LE + +S + +N+D+++ F ++ I
Sbjct: 581 EPLEIRRKLLYSLLRCKEGVLE-----YATHSEM------------NNIDDIDIFLQDAI 623
Query: 415 ENRDEGIVLKDL--GSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLII 458
EN EG+++K L + +EP RS WLK+K +YI SD +D++ I
Sbjct: 624 ENNCEGLMVKTLLDNASYEPSRRSLNWLKVKKDYIEGLSDSVDLVPI 670
Score = 208 (78.3 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 68/221 (30%), Positives = 108/221 (48%)
Query: 401 HNVDEVEKFFKETIENRDEGIVLKDL--GSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLI 457
+N+D+++ F ++ IEN EG+++K L + +EP RS WLK+K +YI SD +D++
Sbjct: 610 NNIDDIDIFLQDAIENNCEGLMVKTLLDNASYEPSRRSLNWLKVKKDYIEGLSDSVDLVP 669
Query: 458 IXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYF 517
I F++A A ++ F + C+ GTG SDE L+A+ L
Sbjct: 670 IAGYYGKGKRSGVYGAFVLA-----AYNSETENFQTVCKAGTGFSDEILNALHESLSDKI 724
Query: 518 RKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITSDIRTIRSEVFSAP-- 571
P + S+Y+V++ K PDVW ++ K+ LS+ S + T V+S
Sbjct: 725 ----IPNKK--SYYEVSD--KLNPDVWFDAHYVWEIKAADLSL-SPVHTAAIGVYSDDKG 775
Query: 572 YSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGK 612
LRFPR R+R DK Q VE + + + K K
Sbjct: 776 IGLRFPRFLRLRDDKNPEQATTAQQIVEF-YEAQFASNKNK 815
Score = 68 (29.0 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 22/93 (23%), Positives = 49/93 (52%)
Query: 124 LTIKEL-NDL--LDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS 180
LTI+ + N+L + ++ S ++ +K V+ L+ E K+I+ + + L++G++ +
Sbjct: 214 LTIQSVFNELKSIPNISGSNSQQKKREVIKKLLVSAKTSEAKYIVRFLQQRLRIGVNSAT 273
Query: 181 IF----HEF---HPDAEDLFNVTCDLKLVCEKL 206
+ + F P+ + N+ D K++ EKL
Sbjct: 274 VLQALAYAFVLTRPEIPE--NIIKDGKMMNEKL 304
>UNIPROTKB|Q980T8 [details] [associations]
symbol:lig "DNA ligase" species:273057 "Sulfolobus
solfataricus P2" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] HAMAP:MF_00407 InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
InterPro:IPR022865 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005694 GO:GO:0051301 GO:GO:0046872 GO:GO:0003677
GO:GO:0007049 GO:GO:0006310 EMBL:AE006641 GenomeReviews:AE006641_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289
GO:GO:0006273 eggNOG:COG1793 KO:K10747 OMA:AQVACLY GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 HOGENOM:HOG000036008 ProtClustDB:PRK01109
PIR:H90159 RefSeq:NP_341745.1 PDB:2HIV PDB:2HIX PDBsum:2HIV
PDBsum:2HIX ProteinModelPortal:Q980T8 SMR:Q980T8 PRIDE:Q980T8
GeneID:1455345 KEGG:sso:SSO0189 EvolutionaryTrace:Q980T8
Uniprot:Q980T8
Length = 601
Score = 212 (79.7 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 91/383 (23%), Positives = 177/383 (46%)
Query: 124 LTIKELNDLLDRLA--SSE-NRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS 180
LT+ E+ L ++A + E +R KI +L+ L+KK + E K+++ + L++GI + +
Sbjct: 119 LTVDEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDAT 178
Query: 181 IFHEFH------PDAEDL----FNVTCDLKLVCEKLKDRN-QRHKRQDIEVGKAVRPQLA 229
+ A ++ +N+ DL + + + ++ + K +VG +RP LA
Sbjct: 179 VLDAMAIAFGGGQSASEIIERAYNLRADLGNIAKIIVEKGIEALKTLKPQVGIPIRPMLA 238
Query: 230 MRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLD-HSEYGHAMSKII 288
R+ + +K+ G +V + K+DG+R QIHK +I FSR + S+Y + +
Sbjct: 239 ERLSNPEEILKKMGGNAIV-DYKYDGERAQIHKKEDKIFIFSRRLENITSQYPDVVD-YV 296
Query: 289 EQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAAR--DGLSSDRQV-LCYFAFDVL 345
+ + I++GE++ D F QE+ R D + ++ + F FD++
Sbjct: 297 SKYIEGKEFIIEGEIVAIDPESGEMRPF---QELMHRKRKSDIYEAIKEYPVNVFLFDLM 353
Query: 346 YVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDE 405
Y D + L+ R +LL+ +VKP+ + H ++V E S + E
Sbjct: 354 YYEDVDYTTKPLEARRKLLESIVKPND---YVKIAHHIQANNV----EDLKSFFYRAISE 406
Query: 406 VEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIXXXXXX 464
E + + G KD + ++ G R W+KLK +Y +D +D++++
Sbjct: 407 GG----EGVMVKAIG---KD--AIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGK 457
Query: 465 XXXXXEVAQFLVALAERPAPDTY 487
+++ L+A A P D++
Sbjct: 458 GKRGGKISSLLMA-AYNPKTDSF 479
Score = 211 (79.3 bits), Expect = 6.1e-14, Sum P(2) = 6.1e-14
Identities = 67/227 (29%), Positives = 110/227 (48%)
Query: 384 LNSHVRPQG--EPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSK--WEPGDRSGKW 439
L S V+P + + A+NV++++ FF I EG+++K +G ++ G R W
Sbjct: 372 LESIVKPNDYVKIAHHIQANNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLW 431
Query: 440 LKLKPEYIRAGSD-LDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVG 498
+KLK +Y +D +D++++ +++ L+A A P D+ F S C+V
Sbjct: 432 IKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMA-AYNPKTDS----FESVCKVA 486
Query: 499 TGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILS--I 556
+G SDE+LD + KL R ++P+ NSK PD+W+E + I+ I
Sbjct: 487 SGFSDEQLDELQKKLMEIKRDVKHPRV----------NSKMEPDIWVEPVYVAEIIGSEI 536
Query: 557 T-SDIRTIRSEVFS--APYSLRFPRIDRVRYDKPWHDCLDVQSFVEL 600
T S + T +V A S+RFPR R R DK D +E+
Sbjct: 537 TISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILEM 583
Score = 55 (24.4 bits), Expect = 6.1e-14, Sum P(2) = 6.1e-14
Identities = 24/103 (23%), Positives = 46/103 (44%)
Query: 124 LTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDL--------KLG 175
+ K + + D+L +R + ++L+ L+ K++ + ++ II L +LG
Sbjct: 1 MEFKVIAEYFDKLEKISSRLQLTALLADLLSKSDKTIIDKVVYIIQGKLWPDFLGYPELG 60
Query: 176 ISEKSIFHEF----HPD---AEDLFNVTCDLKLVCEKLKDRNQ 211
I EK + + D E+L+ DL V +LK + Q
Sbjct: 61 IGEKFLIKAISIATNTDENSVENLYKTIGDLGEVARRLKSKQQ 103
>UNIPROTKB|Q75CS4 [details] [associations]
symbol:ACL155W "DNA ligase" species:284811 "Ashbya gossypii
ATCC 10895" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 GO:GO:0006284 GO:GO:0003677
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006289 GO:GO:0000278 EMBL:AE016816 GenomeReviews:AE016816_GR
GO:GO:0006273 HOGENOM:HOG000036006 KO:K10747 OMA:AQVACLY
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OrthoDB:EOG4RV60K RefSeq:NP_983249.1
ProteinModelPortal:Q75CS4 STRING:Q75CS4 EnsemblFungi:AAS51073
GeneID:4619369 KEGG:ago:AGOS_ACL155W PhylomeDB:Q75CS4
Uniprot:Q75CS4
Length = 697
Score = 182 (69.1 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 56/204 (27%), Positives = 92/204 (45%)
Query: 403 VDEVEKFFKETIENRDEGIVLKDLG---SKWEPGDRSGKWLKLKPEYIRA-GSDLDVLII 458
+ E++ + ++++ EG+++K L S++EP RS WLKLK +Y+ G LD+ ++
Sbjct: 497 LSELQTYLEQSVSASCEGLMVKMLDGEESQYEPSKRSRNWLKLKKDYLEGVGDSLDLAVL 556
Query: 459 XXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFR 518
FL+ PD F + C++GTG S+E L ++ +LK
Sbjct: 557 GAYYGRGKRTGTYGGFLLGCYN---PDL--EEFETCCKIGTGFSEEVLQSLHAQLK---- 607
Query: 519 KYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRS---EVFSAPYSLR 575
+ AP V+ + PDVW E +L+ + + +V+ SLR
Sbjct: 608 --DTVIAAPRG--DVSYDDSSPPDVWFEPAMLFEVLTADLSLSPVYKAGRDVYGKGISLR 663
Query: 576 FPRIDRVRYDKPWHDCLDVQSFVE 599
FPR R+R DK D VE
Sbjct: 664 FPRFLRIREDKSVTDATSSDQIVE 687
Score = 172 (65.6 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 64/246 (26%), Positives = 109/246 (44%)
Query: 221 GKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIH--KNGSEIHYFSRSFLDHS 278
G ++P LA + G+ E K+DG+R Q+H ++G+ I +SR+ + +
Sbjct: 330 GIPLKPMLAKPTKSITEVLDRFQGQRFTCEYKYDGERAQVHLMEDGT-IRIYSRNSENMT 388
Query: 279 E-YGHAMSKIIEQNVLVDRC-ILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLS-SDRQ 335
E Y N R I+D E + WD + F Q ++ R G+ D +
Sbjct: 389 ERYPEIQFHQFLANPQTTRSLIIDCEAVAWDNEKQKILPF---QVLSTRKRKGVELKDVK 445
Query: 336 V-LCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEP 394
V +C FAFD+LY+ S++ SL +R + L V+K G L+ N +
Sbjct: 446 VRVCLFAFDLLYLNGESLLKCSLADRRKHLYSVLKVVPGELQFA------NEITTMELSE 499
Query: 395 CWSLVAHNVD-EVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSD 452
+ + +V E + ++ + S++EP RS WLKLK +Y+ G
Sbjct: 500 LQTYLEQSVSASCEGLMVKMLDGEE---------SQYEPSKRSRNWLKLKKDYLEGVGDS 550
Query: 453 LDVLII 458
LD+ ++
Sbjct: 551 LDLAVL 556
Score = 85 (35.0 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 38/148 (25%), Positives = 67/148 (45%)
Query: 40 CDSVDYFSALRLILPSL--DRERG-SYGLKESVLANCLIDALGMSKDSADAVRLINWRKG 96
CD L + L D E G GL E +L + DA G S A VR ++R+
Sbjct: 128 CDPGHLIPVTYLFINRLGPDYEPGLELGLGEGILIKTISDACGKS---AAQVRS-SYREC 183
Query: 97 GAAPNAGNFPMVAAEVLQRRQGMISGGLTIKELNDLLDRLASSENR---AEKISVLSTLI 153
G + G A V+Q LT++++ L +A +E + +KI ++ ++
Sbjct: 184 G---DLGTVAQ-QARVVQPTM-FKPKPLTVRDVFSTLQAIAQAEGKDSQGKKIRLIKKML 238
Query: 154 KKTNAQEMKWIIMIILKDLKLGISEKSI 181
E K++I + L++G++EK++
Sbjct: 239 TACQGMEAKYLIRSLESKLRIGLAEKTV 266
>POMBASE|SPBC713.06 [details] [associations]
symbol:adl1 "DNA ligase (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003910 "DNA ligase (ATP) activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0007165 "signal transduction"
evidence=IEA] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0071897 "DNA biosynthetic process" evidence=IC]
InterPro:IPR000014 InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 SMART:SM00091 PomBase:SPBC713.06
GO:GO:0005524 GO:GO:0005634 GO:GO:0007165 GO:GO:0003677
GO:GO:0006260 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 HSSP:P18858 RefSeq:NP_595345.1
ProteinModelPortal:Q9C1W9 STRING:Q9C1W9 EnsemblFungi:SPBC713.06.1
GeneID:2541111 KEGG:spo:SPBC713.06 OMA:GAVKTTM OrthoDB:EOG4SFDF2
NextBio:20802224 GO:GO:0071897 Uniprot:Q9C1W9
Length = 774
Score = 181 (68.8 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 105/411 (25%), Positives = 161/411 (39%)
Query: 201 LVCEKLKDRNQRHK-RQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQ 259
LV L++ + K I G V+P L + +L E K+DG R Q
Sbjct: 381 LVATLLREGIENLKDNMSIRPGIPVKPMLGSITKNLQHMLERLTDHNFSCEFKYDGQRAQ 440
Query: 260 IHKNG-SEIHYFSRSFLDHSEYGHAMSKIIE--QNVLVDRC--ILDGEMLVWDTSLNRFA 314
IH + I FSR E +IE Q L C I++GE++ D S +
Sbjct: 441 IHCDRLGNIKIFSRHL---EEITGRFPDVIEVAQLALKHSCDFIIEGELVAIDKSNGQIL 497
Query: 315 EFG--SNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSK 372
+F S +E K ++ D +C F FD+++ S + L ER + +
Sbjct: 498 DFQKLSTRERKKVTVADITID---VCVFVFDIMFCDGKSCLQMPLIERRRMFFEHFN--- 551
Query: 373 GRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLG----- 427
L+P+ R Q SL + +++FF I N+ EG+++K L
Sbjct: 552 -----LIPN-------RFQFVS--SLETNEEQSIQEFFSLAITNKCEGLMVKVLNGTNSK 597
Query: 428 --SKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIXXXXXXXXXXXEVAQFLVALAERPAPD 485
S +EP R W+K+K +Y LD++ I + L+A+ PD
Sbjct: 598 FPSTYEPDKRGEGWIKVKQDYDDEFESLDLVPIGAWYGNGRKAGWFSPILLAVYN---PD 654
Query: 486 TYPRRFISFCRVGTGLSDE---------ELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNN 536
T + + C+ +G SD+ L++ + LKP + E K P Y
Sbjct: 655 T--GAYEAVCKCMSGFSDQFYKELTQKYSLESGNSSLKPIYNFCETGK-VTPQIYFAPQE 711
Query: 537 SKERPDVWI-ESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDK 586
E I SP L + D R + S+RFPR RVR DK
Sbjct: 712 VWEIKGAQITSSPAYKAALGLIQDDRGL---------SIRFPRFIRVRSDK 753
Score = 85 (35.0 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 42/177 (23%), Positives = 84/177 (47%)
Query: 12 LVSLFNWIQKTKPAAKKRSKFRKFLDT--YCDSVDYFSALRLILPSLDRE-RG-SYGLKE 67
L + F+ I TK + + FL T Y D + + L S+ G + G+
Sbjct: 165 LANTFSLISSTKSRIRIVTLLTNFLLTLLYADPDSLIATVWLCTNSIAPNFYGKNLGVGP 224
Query: 68 SVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMISGGLTIK 127
++ + L + G++ A A++ + W K G + V+ L R + LTIK
Sbjct: 225 AMYSKALKEVCGIT---ASALKNL-WNKYGDPGDVAFEAKVSVRTLSRPEP-----LTIK 275
Query: 128 ELNDLLDRLASSE-NRAE--KISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSI 181
++ L ++A S N A+ K+ + L+ +NA+E+++I I+++L++G + ++
Sbjct: 276 KVYSTLLKIADSNGNGAQNRKLELTKFLLISSNAEEVRYIGRSIMQNLRIGAVQNTM 332
>UNIPROTKB|Q0IWT4 [details] [associations]
symbol:Os10g0489200 "DNA ligase" species:39947 "Oryza
sativa Japonica Group" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
GO:GO:0006310 EMBL:AP008216 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 RefSeq:NP_001064917.1 UniGene:Os.50787
STRING:Q0IWT4 PRIDE:Q0IWT4 GeneID:4348965 KEGG:osa:4348965
Gramene:Q0IWT4 ProtClustDB:CLSN2919973 Uniprot:Q0IWT4
Length = 828
Score = 221 (82.9 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 71/267 (26%), Positives = 124/267 (46%)
Query: 220 VGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIH--KNGSEIHYFSRSFLDH 277
+G V P LA K G E E K+DG+R QIH ++GS + +SR+ +
Sbjct: 537 IGVPVGPMLAKATKSVSEIIDKFQGLEYTCEYKYDGERAQIHCLEDGS-VEIYSRNAERN 595
Query: 278 S-EYGHAMSKIIE-QNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLS-SDR 334
+ +Y + + + V +LD E++ +D + F Q ++ AR G++ SD
Sbjct: 596 TGKYPDVVDAVSRFRKPTVKSFVLDCEIVAYDREKKKILPF---QILSTRARKGVTISDI 652
Query: 335 QV-LCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGE 393
+V +C F FD+LY+ ++ + LK R E L + G +
Sbjct: 653 KVSVCTFGFDILYINGKPLLQEQLKVRREHLYNSFEEVPGVFQLAT-------------- 698
Query: 394 PCWSLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLKPEYIRA-G 450
S+ +++++E++KF + + EG+++K D + +EP RS WLKLK +Y+ + G
Sbjct: 699 ---SITSNDLEEIQKFLDTAVNSSCEGLIIKTLDKDATYEPAKRSNNWLKLKKDYMDSIG 755
Query: 451 SDLDVLIIXXXXXXXXXXXEVAQFLVA 477
LD++ I FL+A
Sbjct: 756 DSLDLVPIAAFHGRGKRTGVYGSFLLA 782
Score = 148 (57.2 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 36/132 (27%), Positives = 66/132 (50%)
Query: 381 DHGLNSHVRPQG--EPCWSLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRS 436
+H NS G + S+ +++++E++KF + + EG+++K D + +EP RS
Sbjct: 681 EHLYNSFEEVPGVFQLATSITSNDLEEIQKFLDTAVNSSCEGLIIKTLDKDATYEPAKRS 740
Query: 437 GKWLKLKPEYIRA-GSDLDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFC 495
WLKLK +Y+ + G LD++ I FL+A D + + C
Sbjct: 741 NNWLKLKKDYMDSIGDSLDLVPIAAFHGRGKRTGVYGSFLLACY-----DEQNEEYQTIC 795
Query: 496 RVGTGLSDEELD 507
+GTG S+++L+
Sbjct: 796 NIGTGFSEQQLE 807
Score = 40 (19.1 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 7/30 (23%), Positives = 20/30 (66%)
Query: 152 LIKKTNAQEMKWIIMIILKDLKLGISEKSI 181
L+ T+ E ++I ++ +++G++EK++
Sbjct: 445 LVAATDC-EPQYITRLLQSKMRIGLAEKTV 473
>UNIPROTKB|A8IAY8 [details] [associations]
symbol:CHLREDRAFT_165757 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0032807 "DNA ligase IV
complex" evidence=IBA] InterPro:IPR012308 InterPro:IPR012310
Pfam:PF01068 Pfam:PF04675 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005694 GO:GO:0003677 GO:GO:0006310 InterPro:IPR012340
SUPFAM:SSF50249 eggNOG:COG5076 GO:GO:0006303 GO:GO:0006289
GO:GO:0006273 GO:GO:0003910 GO:GO:0032807 EMBL:DS496115
RefSeq:XP_001702477.1 ProteinModelPortal:A8IAY8
EnsemblPlants:EDP06256 GeneID:5728031 KEGG:cre:CHLREDRAFT_165757
ProtClustDB:CLSN2923912 InterPro:IPR006502 Pfam:PF04720
Uniprot:A8IAY8
Length = 1330
Score = 104 (41.7 bits), Expect = 6.7e-13, Sum P(6) = 6.7e-13
Identities = 33/92 (35%), Positives = 49/92 (53%)
Query: 27 KKRSKFRKFLDTYC---DSVDYFSALRLILPSL--DRERGSYGLKESVLANCLIDALGMS 81
KK ++F+ + D D + RL+LP +RERG+Y LKE+ LA L A+G S
Sbjct: 53 KKVLVLQRFMSRHVPRTDGDDLYGLYRLLLPREHDERERGNYNLKEAKLAAVLALAVGAS 112
Query: 82 KDSADAVRLINWRKGGAAPNAGNFPMVAAEVL 113
++D R WR+ G ++G F V EV+
Sbjct: 113 --ASDTQRAKMWRQLGHL-SSGQFDKVMYEVI 141
Score = 101 (40.6 bits), Expect = 6.7e-13, Sum P(6) = 6.7e-13
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 417 RDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLII 458
R+EGIV+K + S + DRSG WLK+KP+Y+ + ++ D ++I
Sbjct: 258 REEGIVVKLVESPYRLNDRSGSWLKVKPDYVDS-TEFDCVVI 298
Score = 81 (33.6 bits), Expect = 1.2e-07, Sum P(5) = 1.2e-07
Identities = 42/149 (28%), Positives = 67/149 (44%)
Query: 183 HEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIG----DAHAA 238
H D +DL+ + +L+ + D +R +++ K + LA+ +G D A
Sbjct: 65 HVPRTDGDDLYGL---YRLLLPREHDERERGN-YNLKEAK-LAAVLALAVGASASDTQRA 119
Query: 239 --WRKL-H---GK--EVVIECKFDG-DRIQIHKNG-SEIHYFSRSFLDHSEYGHAMSKII 288
WR+L H G+ +V+ E D DR ++H+ G +FSR +H E
Sbjct: 120 KMWRQLGHLSSGQFDKVMYEVITDLLDRREVHRTGPGAFKFFSRRGKEHGELRD------ 173
Query: 289 EQNVLVDRCILDGEMLVWDTSLNRFAEFG 317
R ILDGEM+VW+ + F FG
Sbjct: 174 ----FGGRLILDGEMVVWNKARQVFEPFG 198
Score = 72 (30.4 bits), Expect = 6.7e-13, Sum P(6) = 6.7e-13
Identities = 33/126 (26%), Positives = 57/126 (45%)
Query: 256 DRIQIHKNG-SEIHYFSRSFLDHSEYGHAMSKIIEQNVLV----DRCILD--GEMLVWDT 308
DR ++H+ G +FSR +H E ++I +V R + + G +
Sbjct: 146 DRREVHRTGPGAFKFFSRRGKEHGELRDFGGRLILDGEMVVWNKARQVFEPFGGLTSAMD 205
Query: 309 SLNRFAEFGS-NQEIAKAARDGL---SSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELL 364
++NR A G + + D + + D +V+ Y FDVLYV SV+ L+E ++
Sbjct: 206 AINRGAGPGQMGNSVMTSDPDYVFPRAQDIEVV-YVVFDVLYVDGGSVLDLPLREEGIVV 264
Query: 365 QKVVKP 370
+ V P
Sbjct: 265 KLVESP 270
Score = 69 (29.3 bits), Expect = 6.7e-13, Sum P(6) = 6.7e-13
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 496 RVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNN 536
RVGTGL+ E+ + V +L+P + P + PP Y+VT +
Sbjct: 307 RVGTGLNAEQYEYVRERLRPLLIELG-PGQRPPRCYRVTGS 346
Score = 58 (25.5 bits), Expect = 6.7e-13, Sum P(6) = 6.7e-13
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 573 SLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNG 606
SLRFPR+ VR DK D V LV + G
Sbjct: 346 SLRFPRVTAVRGDKAPADANSVDELDRLVAARKG 379
Score = 44 (20.5 bits), Expect = 6.7e-13, Sum P(6) = 6.7e-13
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 674 LDSLHKMVVENGGTFSMNLNNSVTH---CVAADNKGLKYEAAK 713
+++L VV NGGT + VTH C++ L+ +A+
Sbjct: 589 VEALKAAVVRNGGTVVDMWDERVTHLAHCLSLIRAALERPSAE 631
Score = 42 (19.8 bits), Expect = 1.9e-08, Sum P(4) = 1.9e-08
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 504 EELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIE 546
E LD VV +++ R E R V N D+W E
Sbjct: 567 ETLDDVVRRIRDEIRDQEARDRVEALKAAVVRNGGTVVDMWDE 609
>UNIPROTKB|F6URE1 [details] [associations]
symbol:LIG1 "DNA ligase" species:9615 "Canis lupus
familiaris" [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 OMA:AQVACLY GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556
Ensembl:ENSCAFT00000006495 EMBL:AAEX03000828 Uniprot:F6URE1
Length = 911
Score = 180 (68.4 bits), Expect = 9.8e-13, Sum P(2) = 9.8e-13
Identities = 72/288 (25%), Positives = 128/288 (44%)
Query: 198 DLKLVCEKLKDRNQRHKRQDIEV--GKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDG 255
DL + L + H + + G ++P LA ++ E K+DG
Sbjct: 505 DLDRIIPVLLEHGLEHLPEHCRLSPGVPLKPMLAHPTRGVSEVLKRFEEAAFTCEYKYDG 564
Query: 256 DRIQIHK-NGSEIHYFSRSFLDHS-EYGHAMSKIIEQNV-LVDRCILDGEMLVWDTSLNR 312
R QIH G E+ FSR+ D++ +Y +S+I + + V ILD E + WD +
Sbjct: 565 QRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQ 624
Query: 313 FAEFGSNQEIAKAARDGL-SSDRQV-LCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKP 370
F Q + R + +++ QV +C +AFD++Y+ S++ + L R +LL++
Sbjct: 625 IQPF---QVLTTRKRKEVDAAEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVE 681
Query: 371 SKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKW 430
++G V L++ Q +A + +E+ K++ E + D+ + +
Sbjct: 682 TEGEF---VFATSLDTKDTDQ-------IA---EFLEQSVKDSCEGLM--VKTLDVDATY 726
Query: 431 EPGDRSGKWLKLKPEYIRA-GSDLDVLIIXXXXXXXXXXXEVAQFLVA 477
E RS WLKLK +Y+ G LD+++I FL+A
Sbjct: 727 EIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLA 774
Score = 179 (68.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 62/209 (29%), Positives = 99/209 (47%)
Query: 388 VRPQGEPCW--SLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLK 443
V +GE + SL + D++ +F ++++++ EG+++K D+ + +E RS WLKLK
Sbjct: 680 VETEGEFVFATSLDTKDTDQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLK 739
Query: 444 PEYIRA-GSDLDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLS 502
+Y+ G LD+++I FL+A A D + C++GTG S
Sbjct: 740 KDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLA-----AYDEESEELQAICKLGTGFS 794
Query: 503 DEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITS 558
DEEL+ +L+ P P S+ +V + PD W++ K LS++
Sbjct: 795 DEELEEHYQRLQALV----LP--TPRSYVRV--DGAVAPDHWLDPSAVWEVKCADLSLSP 846
Query: 559 DIRTIRSEVFSAP-YSLRFPRIDRVRYDK 586
R V SLRFPR RVR DK
Sbjct: 847 IYPAARGLVDGEKGISLRFPRFIRVREDK 875
Score = 81 (33.6 bits), Expect = 9.8e-13, Sum P(2) = 9.8e-13
Identities = 36/137 (26%), Positives = 58/137 (42%)
Query: 45 YFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGN 104
Y S RL P E G+ + VL + A G DS A G A N+ +
Sbjct: 325 YLSLNRLGPPQQGLE---LGVGDGVLLKAVAQATGRQLDSVKAEAAEKGDVGLVAENSRS 381
Query: 105 FPMVAAEVLQRRQGMISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWI 164
++ + + G+ K D+ RLA S + A+KI V+ L E ++I
Sbjct: 382 ----TQRLMLPPPALTAAGVFAK-FRDIA-RLAGSASTAKKIDVIKGLFVACRHSEARFI 435
Query: 165 IMIILKDLKLGISEKSI 181
+ L+LG++E+S+
Sbjct: 436 ARALSGRLRLGLAEQSV 452
>MGI|MGI:101789 [details] [associations]
symbol:Lig1 "ligase I, DNA, ATP-dependent" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003909 "DNA ligase
activity" evidence=ISO] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IBA;IDA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0006260
"DNA replication" evidence=IMP] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006281 "DNA repair" evidence=ISO;IMP] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0042542 "response to hydrogen peroxide"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 MGI:MGI:101789
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0051301 GO:GO:0046872 GO:GO:0003677 GO:GO:0007049
GO:GO:0006310 GO:GO:0042542 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006303 GO:GO:0006273 eggNOG:COG1793
KO:K10747 GO:GO:0003910 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 CTD:3978 HOVERGEN:HBG005514 EMBL:U04674
EMBL:U19604 IPI:IPI00473314 PIR:I48921 RefSeq:NP_034845.2
UniGene:Mm.288179 UniGene:Mm.421129 ProteinModelPortal:P37913
SMR:P37913 STRING:P37913 PhosphoSite:P37913 PaxDb:P37913
PRIDE:P37913 GeneID:16881 KEGG:mmu:16881 InParanoid:P37913
NextBio:290882 CleanEx:MM_LIG1 Genevestigator:P37913
GermOnline:ENSMUSG00000056394 Uniprot:P37913
Length = 916
Score = 190 (71.9 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 81/309 (26%), Positives = 141/309 (45%)
Query: 175 GISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGD 234
G+ K F E PD + + V + L E+L + H + + G ++P LA
Sbjct: 498 GMILKQTFCEV-PDLDRIIPVLLEHGL--ERLPE----HCK--LSPGVPLKPMLAHPTRG 548
Query: 235 AHAAWRKLHGKEVVIECKFDGDRIQIHK-NGSEIHYFSRSFLDHS-EYGHAMSKIIE-QN 291
++ + E K+DG R QIH G E+ FSR+ D++ +Y +S+I + ++
Sbjct: 549 VSEVLKRFEEVDFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISRIPKIKH 608
Query: 292 VLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGL-SSDRQV-LCYFAFDVLYVGD 349
V ILD E + WD + F Q + R + +S+ QV +C +AFD++Y+
Sbjct: 609 PSVTSFILDTEAVAWDREKKQIQPF---QVLTTRKRKEVDASEIQVQVCLYAFDLIYLNG 665
Query: 350 TSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKF 409
S++ Q L R +LL++ ++G V L++ Q +A + +E+
Sbjct: 666 ESLVRQPLSRRRQLLRENFVETEGEF---VFTTSLDTKDTEQ-------IA---EFLEQS 712
Query: 410 FKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLIIXXXXXXXXXX 468
K++ E + D+ + +E RS WLKLK +Y+ G LD+++I
Sbjct: 713 VKDSCEGLM--VKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRA 770
Query: 469 XEVAQFLVA 477
FL+A
Sbjct: 771 GRYGGFLLA 779
Score = 164 (62.8 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
Identities = 61/209 (29%), Positives = 96/209 (45%)
Query: 388 VRPQGEPCW--SLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLK 443
V +GE + SL + +++ +F ++++++ EG+++K D+ + +E RS WLKLK
Sbjct: 685 VETEGEFVFTTSLDTKDTEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLK 744
Query: 444 PEYIRA-GSDLDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLS 502
+Y+ G LD+++I FL+A A D + C++GTG S
Sbjct: 745 KDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLA-----AYDEESEELQAICKLGTGFS 799
Query: 503 DEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESP----EKSIILSITS 558
DEEL+ L+ P P Y V + PD W++ K LS++
Sbjct: 800 DEELEEHHQSLQALV----LPTPRP---Y-VRIDGAVAPDHWLDPSIVWEVKCADLSLSP 851
Query: 559 DIRTIRSEVFSAP-YSLRFPRIDRVRYDK 586
R V SLRFPR RVR DK
Sbjct: 852 IYPAARGLVDKEKGISLRFPRFIRVRKDK 880
Score = 70 (29.7 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 36/137 (26%), Positives = 57/137 (41%)
Query: 45 YFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGN 104
Y S RL P E G+ + VL + A G +S +R KG A N
Sbjct: 330 YLSLNRLGPPQQGLE---LGVGDGVLLKAVAQATGRQLES---IRAEVAEKGDVGLVAEN 383
Query: 105 FPMVAAEVLQRRQGMISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWI 164
+L ISG T + D+ RL S + A+K+ ++ L E ++I
Sbjct: 384 SRSTQRLMLPPPPLTISGVFT--KFCDIA-RLTGSASMAKKMDIIKGLFVACRHSEARYI 440
Query: 165 IMIILKDLKLGISEKSI 181
+ L+LG++E+S+
Sbjct: 441 ARSLSGRLRLGLAEQSV 457
>UNIPROTKB|E2QTV4 [details] [associations]
symbol:LIG1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 Ensembl:ENSCAFT00000006495 Uniprot:E2QTV4
Length = 919
Score = 180 (68.4 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 72/288 (25%), Positives = 128/288 (44%)
Query: 198 DLKLVCEKLKDRNQRHKRQDIEV--GKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDG 255
DL + L + H + + G ++P LA ++ E K+DG
Sbjct: 513 DLDRIIPVLLEHGLEHLPEHCRLSPGVPLKPMLAHPTRGVSEVLKRFEEAAFTCEYKYDG 572
Query: 256 DRIQIHK-NGSEIHYFSRSFLDHS-EYGHAMSKIIEQNV-LVDRCILDGEMLVWDTSLNR 312
R QIH G E+ FSR+ D++ +Y +S+I + + V ILD E + WD +
Sbjct: 573 QRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQ 632
Query: 313 FAEFGSNQEIAKAARDGL-SSDRQV-LCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKP 370
F Q + R + +++ QV +C +AFD++Y+ S++ + L R +LL++
Sbjct: 633 IQPF---QVLTTRKRKEVDAAEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVE 689
Query: 371 SKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKW 430
++G V L++ Q +A + +E+ K++ E + D+ + +
Sbjct: 690 TEGEF---VFATSLDTKDTDQ-------IA---EFLEQSVKDSCEGLM--VKTLDVDATY 734
Query: 431 EPGDRSGKWLKLKPEYIRA-GSDLDVLIIXXXXXXXXXXXEVAQFLVA 477
E RS WLKLK +Y+ G LD+++I FL+A
Sbjct: 735 EIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLA 782
Score = 179 (68.1 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 62/209 (29%), Positives = 99/209 (47%)
Query: 388 VRPQGEPCW--SLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLK 443
V +GE + SL + D++ +F ++++++ EG+++K D+ + +E RS WLKLK
Sbjct: 688 VETEGEFVFATSLDTKDTDQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLK 747
Query: 444 PEYIRA-GSDLDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLS 502
+Y+ G LD+++I FL+A A D + C++GTG S
Sbjct: 748 KDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLA-----AYDEESEELQAICKLGTGFS 802
Query: 503 DEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITS 558
DEEL+ +L+ P P S+ +V + PD W++ K LS++
Sbjct: 803 DEELEEHYQRLQALV----LP--TPRSYVRV--DGAVAPDHWLDPSAVWEVKCADLSLSP 854
Query: 559 DIRTIRSEVFSAP-YSLRFPRIDRVRYDK 586
R V SLRFPR RVR DK
Sbjct: 855 IYPAARGLVDGEKGISLRFPRFIRVREDK 883
Score = 77 (32.2 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 36/137 (26%), Positives = 58/137 (42%)
Query: 45 YFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGN 104
Y S RL P E G+ + VL + A + D+V+ KG A N
Sbjct: 331 YLSLNRLGPPQQGLE---LGVGDGVLLKAVAQATAQGRQ-LDSVKAEAAEKGDVGLVAEN 386
Query: 105 FPMVAAEVLQRRQGMISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWI 164
+L + + G+ K D+ RLA S + A+KI V+ L E ++I
Sbjct: 387 SRSTQRLMLPP-PALTAAGVFAK-FRDIA-RLAGSASTAKKIDVIKGLFVACRHSEARFI 443
Query: 165 IMIILKDLKLGISEKSI 181
+ L+LG++E+S+
Sbjct: 444 ARALSGRLRLGLAEQSV 460
>UNIPROTKB|Q9FCB1 [details] [associations]
symbol:lig "Probable DNA ligase" species:100226
"Streptomyces coelicolor A3(2)" [GO:0003910 "DNA ligase (ATP)
activity" evidence=IBA] [GO:0005694 "chromosome" evidence=IBA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273 "lagging
strand elongation" evidence=IBA] [GO:0006289 "nucleotide-excision
repair" evidence=IBA] HAMAP:MF_00407 InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 InterPro:IPR022865 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
GO:GO:0005524 GO:GO:0005694 GO:GO:0051301 GO:GO:0046872
GO:GO:0003677 GO:GO:0007049 GO:GO:0006310 GenomeReviews:AL645882_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289
GO:GO:0006273 eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 OMA:ARVQVHK
HOGENOM:HOG000036008 KO:K01971 ProtClustDB:PRK03180 EMBL:AL939108
RefSeq:NP_625491.1 ProteinModelPortal:Q9FCB1 GeneID:1096625
KEGG:sco:SCO1202 PATRIC:23731956 Uniprot:Q9FCB1
Length = 512
Score = 160 (61.4 bits), Expect = 4.2e-12, Sum P(3) = 4.2e-12
Identities = 85/307 (27%), Positives = 138/307 (44%)
Query: 102 AGNFPM----VAAEVLQRRQGMISGG-LTIKELNDLLDRLAS---SENRAEKISVLSTLI 153
AG P V +VL RR LT+++++ L RL + + ++AE+ ++ L+
Sbjct: 46 AGRLPQGRIGVGWKVLSRRVPPADAPTLTVRDVDARLTRLGAVSGAGSQAERTRLVGELM 105
Query: 154 KKTNAQEMKWIIMIILKDLKLGISEKSIFH------EFHP-DAEDLFNVTCDLKLVCEKL 206
E +++I ++ +++ G + + + P D + L+ V E L
Sbjct: 106 GAATEDEQRFLIGLLTGEVRQGALDAAAVEGLAAATDAPPADVRRAVMLAGSLQTVAEAL 165
Query: 207 -KDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGS 265
D R + VG+ V P LA A KL G V E K DG R+Q+H++G
Sbjct: 166 LADGPGALDRFRLTVGQPVLPMLAHSASSVAEAVGKL-GAAAVEE-KLDGIRVQVHRDGG 223
Query: 266 EIHYFSRSFLDHSEYGHAMSKIIEQNVLV--DRCILDGEMLVWDTS--LNRFAE----FG 317
+ ++R+ D ++ + ++ E + + +R ILDGE + D F E G
Sbjct: 224 TVRIYTRTLDDITD---RLPEVTEAALALPGERFILDGEAISLDADGRPRSFQETAGRVG 280
Query: 318 SNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERH-ELLQKVVKPSKGRLE 376
S ++A AAR V F FDVL V ++ L ERH EL + V +P + R
Sbjct: 281 SRTDVATAARAV-----PVSAVF-FDVLSVDGRDLLDLPLTERHAELARLVPEPLRVR-R 333
Query: 377 TLVPDHG 383
TLV HG
Sbjct: 334 TLV--HG 338
Score = 132 (51.5 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 84/332 (25%), Positives = 141/332 (42%)
Query: 133 LDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFH------EFH 186
L ++ + ++AE+ ++ L+ E +++I ++ +++ G + + +
Sbjct: 85 LGAVSGAGSQAERTRLVGELMGAATEDEQRFLIGLLTGEVRQGALDAAAVEGLAAATDAP 144
Query: 187 P-DAEDLFNVTCDLKLVCEKL-KDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWRKLHG 244
P D + L+ V E L D R + VG+ V P LA A KL G
Sbjct: 145 PADVRRAVMLAGSLQTVAEALLADGPGALDRFRLTVGQPVLPMLAHSASSVAEAVGKL-G 203
Query: 245 KEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLV--DRCILDGE 302
V E K DG R+Q+H++G + ++R+ D ++ + ++ E + + +R ILDGE
Sbjct: 204 AAAVEE-KLDGIRVQVHRDGGTVRIYTRTLDDITD---RLPEVTEAALALPGERFILDGE 259
Query: 303 MLVWDTS--LNRFAE----FGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQS 356
+ D F E GS ++A AAR V F FDVL V ++
Sbjct: 260 AISLDADGRPRSFQETAGRVGSRTDVATAARAV-----PVSAVF-FDVLSVDGRDLLDLP 313
Query: 357 LKERH-ELLQKVVKPSKGRLETLV--P-DHGLNSH--VRPQGEPCWSLVAHNVDEVEKFF 410
L ERH EL + V +P + R TLV P D G R +V +D
Sbjct: 314 LTERHAELARLVPEPLRVR-RTLVHGPEDTGAAEEFLARTLARGHEGVVVKGLDAAYSAG 372
Query: 411 KETIE-NRDEGIVLKDL---GSKWEPGDRSGK 438
+ + + + DL ++W G R+GK
Sbjct: 373 RRGASWLKVKPVHTLDLVVLAAEWGHGRRTGK 404
Score = 83 (34.3 bits), Expect = 4.2e-12, Sum P(3) = 4.2e-12
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 407 EKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKP 444
E+F T+ EG+V+K L + + G R WLK+KP
Sbjct: 346 EEFLARTLARGHEGVVVKGLDAAYSAGRRGASWLKVKP 383
Score = 49 (22.3 bits), Expect = 4.2e-12, Sum P(3) = 4.2e-12
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 544 WIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFV 598
W + +++ I D RS + A +LRF R+ R R DK D V + +
Sbjct: 451 WGVTVRPELVVEIAYD-GLQRSTRYPAGVTLRFARVVRYREDKRPEDADTVDTLL 504
>UNIPROTKB|A4IFC8 [details] [associations]
symbol:LIG1 "DNA ligase" species:9913 "Bos taurus"
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006266 "DNA
ligation" evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0042542 "response to hydrogen peroxide" evidence=IEA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0051103
"DNA ligation involved in DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006273
eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747 OMA:AQVACLY
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556 CTD:3978
HOVERGEN:HBG005514 EMBL:DAAA02047435 EMBL:BC134518 IPI:IPI00686777
RefSeq:NP_001096018.1 UniGene:Bt.12876 SMR:A4IFC8 STRING:A4IFC8
Ensembl:ENSBTAT00000031920 GeneID:100124507 KEGG:bta:100124507
NextBio:20788728 Uniprot:A4IFC8
Length = 916
Score = 185 (70.2 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 81/309 (26%), Positives = 138/309 (44%)
Query: 175 GISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGD 234
G+ K F E PD E + V + L E+L + H R + G ++P LA
Sbjct: 497 GMILKQTFCEV-PDLERIVPVLLEHGL--ERLPE----HCR--LSPGVPLKPMLAHPTRG 547
Query: 235 AHAAWRKLHGKEVVIECKFDGDRIQIHK-NGSEIHYFSRSFLDHS-EYGHAMSKIIEQNV 292
++ E K+DG R QIH G E+ FSR+ D++ Y +S+I + +
Sbjct: 548 VSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGRYPDIISRIPKIKL 607
Query: 293 -LVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGL-SSDRQV-LCYFAFDVLYVGD 349
V ILD E + WD + F Q + R + +++ QV +C +AFD++Y+
Sbjct: 608 PSVTSFILDTEAVAWDREKKQIQPF---QVLTTRKRKEVDAAEIQVQVCLYAFDLIYLNG 664
Query: 350 TSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKF 409
S++ + L R +LL++ ++G V L++ Q +A + +E+
Sbjct: 665 KSLVREPLSRRRQLLRENFVETEGEF---VFATSLDTKDTEQ-------IA---EFLEQS 711
Query: 410 FKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLIIXXXXXXXXXX 468
K++ E + D+ + +E RS WLKLK +Y+ G LD+++I
Sbjct: 712 VKDSCEGLM--VKTLDVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRA 769
Query: 469 XEVAQFLVA 477
FL+A
Sbjct: 770 GRYGGFLLA 778
Score = 182 (69.1 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 62/209 (29%), Positives = 101/209 (48%)
Query: 388 VRPQGEPCW--SLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLK 443
V +GE + SL + +++ +F ++++++ EG+++K D+ + +E RS WLKLK
Sbjct: 684 VETEGEFVFATSLDTKDTEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLK 743
Query: 444 PEYIRA-GSDLDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLS 502
+Y+ G LD+++I FL+A + D F + C++GTG S
Sbjct: 744 KDYLEGVGDTLDLVVIGAYLGKGKRAGRYGGFLLA-----SYDEESEEFQAICKLGTGFS 798
Query: 503 DEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITS 558
DEEL+ +L+ P P S+ V + PD W++ + K LS++
Sbjct: 799 DEELEEHHQRLQALV----LP--TPRSY--VRADGAVAPDHWLDPSDVWEVKCADLSLSP 850
Query: 559 DIRTIRSEVFSAP-YSLRFPRIDRVRYDK 586
R V S SLRFPR RVR DK
Sbjct: 851 IYPAARGLVDSEKGISLRFPRFIRVREDK 879
Score = 69 (29.3 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 36/137 (26%), Positives = 57/137 (41%)
Query: 45 YFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGN 104
Y S RL P E G+ E +L + A G +S VR KG A +
Sbjct: 329 YLSLNRLGPPQQGLE---LGIGEGILLKAVAQATGRQLES---VRAEVAEKGDVGLVAES 382
Query: 105 FPMVAAEVLQRRQGMISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWI 164
VL + + G+ K D+ +LA S + +KI V+ L E ++I
Sbjct: 383 SRSTQRLVLPP-PALTAAGVFAK-FRDIA-QLAGSASTTKKIDVIKGLFVACRHSEARFI 439
Query: 165 IMIILKDLKLGISEKSI 181
+ L+LG++E+S+
Sbjct: 440 ARALSGRLRLGLAEQSV 456
>DICTYBASE|DDB_G0274493 [details] [associations]
symbol:lig1 "DNA ligase I" species:44689
"Dictyostelium discoideum" [GO:0051103 "DNA ligation involved in
DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;IBA] [GO:0003909 "DNA ligase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] [GO:0006273 "lagging
strand elongation" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0005634 "nucleus" evidence=IEA;IBA]
[GO:0051301 "cell division" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 dictyBase:DDB_G0274493
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0051301 GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000151_GR
EMBL:AAFI02000012 GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273
eggNOG:COG1793 KO:K10747 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
RefSeq:XP_644124.1 HSSP:P18858 ProteinModelPortal:Q869E1
STRING:Q869E1 EnsemblProtists:DDB0232265 GeneID:8619554
KEGG:ddi:DDB_G0274493 OMA:SERYSIM Uniprot:Q869E1
Length = 1192
Score = 206 (77.6 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 63/221 (28%), Positives = 108/221 (48%)
Query: 402 NVDEVEKFFKETIENRDEGIVLKDLGSK--WEPGDRSGKWLKLKPEYIRAGSD-LDVLII 458
+V++++ + +E +E EG+++K L K +EP RS WLK+K +Y++ +D LD++ I
Sbjct: 979 DVNDIQSYLEEAVEGNCEGLMVKTLKEKSIYEPSRRSYNWLKIKKDYMQGMTDSLDLVPI 1038
Query: 459 XXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFR 518
+L+A D F + C++GTG SDE+L ++LKP+
Sbjct: 1039 GAWYGKGKRTGTYGAYLLACY-----DENNEEFQTLCKIGTGFSDEQLTTFTSQLKPHLI 1093
Query: 519 KYEYPKRAPPSFYQVTNNSKERPDVWIESPEK--SII---LSITSDIRTIRSEVF--SAP 571
P + ++ +++ K PDVW SP ++ LSI S + T S + +
Sbjct: 1094 NQ------PRNQFRFSDSIK--PDVWF-SPSCVWEVLAADLSI-SPVHTAASGILDPNKG 1143
Query: 572 YSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGK 612
+LRFPR R+R DK D V++ + +Q K
Sbjct: 1144 IALRFPRFIRIRPDKSPEDATSSDQVVDMYQNQKINSQSSK 1184
Score = 164 (62.8 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 65/248 (26%), Positives = 118/248 (47%)
Query: 218 IEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHK--NGSEIHYFSRSFL 275
++VG V+P LA + E E K+DG+R QIH+ +G+ H ++R+
Sbjct: 810 LKVGIPVKPMLAQPTTGISQMLDRFSDMEFTCEFKYDGERAQIHRLPDGTT-HIYTRNLE 868
Query: 276 DHSE-YGHAMSKIIE-QNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDG--LS 331
D+++ Y ++ + + V ILD E + +D + + F Q ++ AR LS
Sbjct: 869 DYTQKYPDIVANVTKFVGPNVKSFILDCEAVAFDAATKKILSF---QVLSTRARKSVQLS 925
Query: 332 SDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQ 391
+ +C FAFD+LY+ S+I + L +R E L +E + G+ + +
Sbjct: 926 QIKVPVCVFAFDLLYLNGQSLIDEPLIKRREHL----------VENFIASDGVFAFAKYS 975
Query: 392 GEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGS 451
+ + ++E + E + + LK+ S +EP RS WLK+K +Y++ +
Sbjct: 976 NISDVNDIQSYLEEAVEGNCEGLMVK----TLKEK-SIYEPSRRSYNWLKIKKDYMQGMT 1030
Query: 452 D-LDVLII 458
D LD++ I
Sbjct: 1031 DSLDLVPI 1038
Score = 50 (22.7 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 24/118 (20%), Positives = 50/118 (42%)
Query: 64 GLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMISGG 123
G+ E VL L ++ G S D ++ G A N + + L + ++
Sbjct: 623 GIGEHVLIKSLAESTGRS---VDVIKQELTEVGDLGIIAQNSR--STQTLMGKPTPLTIQ 677
Query: 124 LTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSI 181
K + D L+ + + +K ++ L+ E +II + L++G++E+S+
Sbjct: 678 SVFKTFQQIAD-LSGTGGQQKKKDLIKKLLVSCKDCETLYIIRSLQGKLRIGLAERSV 734
>TAIR|locus:2010207 [details] [associations]
symbol:AT1G49250 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003909 "DNA ligase
activity" evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
EMBL:CP002684 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OMA:PAFENTT IPI:IPI00521723 RefSeq:NP_175351.1
UniGene:At.52091 ProteinModelPortal:F4I1P7 SMR:F4I1P7 PRIDE:F4I1P7
EnsemblPlants:AT1G49250.1 GeneID:841349 KEGG:ath:AT1G49250
PhylomeDB:F4I1P7 Uniprot:F4I1P7
Length = 657
Score = 200 (75.5 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 64/226 (28%), Positives = 105/226 (46%)
Query: 397 SLVAHNVDEVEKFFKETIENRDEGIVLKDLGSK--WEPGDRSGKWLKLKPEYI-RAGSDL 453
+L ++++ E+++F K +I+ EG+++K L S +EP RS WLKLK +Y+ G +
Sbjct: 441 ALTSNDIGELQEFLKASIDIGCEGLMIKSLYSNATYEPAKRSNNWLKLKKDYMDNIGDSV 500
Query: 454 DVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKL 513
D++ I +L+A D F S C++GT SD EL + + L
Sbjct: 501 DLVPIATFHGRGKRTGFFGAYLLACY-----DVDKEEFQSICKIGTEFSDVELQDLSSSL 555
Query: 514 KPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSA--P 571
+ PK+ +YQV N+ PDVW+E E + + + + E P
Sbjct: 556 CS--KVIATPKQ----YYQVDNDLN--PDVWLEPTEVWEVKAADLTVSPVYREAIGIVDP 607
Query: 572 ---YSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSS--NGTTQKGK 612
SLRFPR+ R+R DK + E+ + N + +GK
Sbjct: 608 DKGISLRFPRLVRIRKDKNPEEATTSDQIAEMYQAQKHNQPSNQGK 653
Score = 131 (51.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 65/253 (25%), Positives = 113/253 (44%)
Query: 214 KRQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIH--KNGS-EI--H 268
K ++ +G VRP LA K E K+DG+R QI+ ++G+ EI
Sbjct: 275 KTCNLTLGVPVRPMLAKATTRVDLILEKFKDTVFTAEYKYDGERAQIYYMEDGTVEIFSR 334
Query: 269 YFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARD 328
+ R+ + + +S++ + V ILD E++ ++ + S +A ++
Sbjct: 335 HAERNTGKYPDVALVLSRL--KKPTVKSFILDCEVVTFNREKEKILPLQST----RAHKN 388
Query: 329 GLSSDRQV-LCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSH 387
SD +V +C FAFD+LY+ +IH++L R E L + G + L S+
Sbjct: 389 VNVSDIKVGVCVFAFDILYLNGQLLIHENLNIRREKLHDSFEEDLGYFQFAT---ALTSN 445
Query: 388 VRPQGEPCWSLVAHNVD-EVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEY 446
GE L A ++D E +++ + + +EP RS WLKLK +Y
Sbjct: 446 --DIGELQEFLKA-SIDIGCEGLMIKSLYSN----------ATYEPAKRSNNWLKLKKDY 492
Query: 447 I-RAGSDLDVLII 458
+ G +D++ I
Sbjct: 493 MDNIGDSVDLVPI 505
Score = 49 (22.3 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 124 LTIKELNDLLDRLASSENRA---EKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS 180
LT+ ++ D L +A + +K ++ L+ T E ++ ++ +L+LG S ++
Sbjct: 156 LTVVKVADTLRLIAKESGKGSKDKKKDLMKALLVATTDCEPLYLTRLLQDNLRLGFSRQT 215
Query: 181 I 181
+
Sbjct: 216 V 216
>UNIPROTKB|F1M624 [details] [associations]
symbol:Lig1 "DNA ligase" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 RGD:621424
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556 IPI:IPI00950231
Ensembl:ENSRNOT00000019799 ArrayExpress:F1M624 Uniprot:F1M624
Length = 912
Score = 188 (71.2 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 71/263 (26%), Positives = 121/263 (46%)
Query: 221 GKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHK-NGSEIHYFSRSFLDHS- 278
G ++P LA ++ + E K+DG R QIH G E+ FSR+ D+S
Sbjct: 531 GVPLKPMLAHPTRGVREVLKRFEEVDFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNSG 590
Query: 279 EYGHAMSKIIE-QNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGL-SSDRQV 336
+Y +S+I + ++ V ILD E + WD + F Q + R + +S+ QV
Sbjct: 591 KYPDIISRIPKIKHPSVTSFILDTEAVAWDREKKQIQPF---QVLTTRKRKEVDASEIQV 647
Query: 337 -LCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPC 395
+C +AFD++Y+ S+ Q L R +LL++ ++G V L++ Q
Sbjct: 648 QVCLYAFDLIYLNGESLARQPLSRRRQLLRENFVETEGEF---VFATSLDTKDIEQ---- 700
Query: 396 WSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLD 454
+A + +E+ K++ E + D+ + +E RS WLKLK +Y+ G LD
Sbjct: 701 ---IA---EFLEQSVKDSCEGLM--VKTLDVDATYEIAKRSHNWLKLKKDYLEGVGDTLD 752
Query: 455 VLIIXXXXXXXXXXXEVAQFLVA 477
+++I FL+A
Sbjct: 753 LVVIGAYLGRGKRAGRYGGFLLA 775
Score = 168 (64.2 bits), Expect = 8.4e-10, Sum P(2) = 8.4e-10
Identities = 60/209 (28%), Positives = 97/209 (46%)
Query: 388 VRPQGEPCW--SLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLK 443
V +GE + SL +++++ +F ++++++ EG+++K D+ + +E RS WLKLK
Sbjct: 681 VETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLK 740
Query: 444 PEYIRA-GSDLDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLS 502
+Y+ G LD+++I FL+A A D + C++GTG S
Sbjct: 741 KDYLEGVGDTLDLVVIGAYLGRGKRAGRYGGFLLA-----AYDEESEELQAICKLGTGFS 795
Query: 503 DEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITS 558
DEEL+ ++ P P Y V + PD W++ K LS++
Sbjct: 796 DEELEEHHQSMQALL----LPTPRP---Y-VRIDGAVAPDHWLDPSVVWEVKCADLSLSP 847
Query: 559 DIRTIRSEVFSAP-YSLRFPRIDRVRYDK 586
R V SLRFPR RVR DK
Sbjct: 848 IYPAARGLVDKEKGISLRFPRFIRVREDK 876
Score = 65 (27.9 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 34/137 (24%), Positives = 57/137 (41%)
Query: 45 YFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGN 104
Y S RL P E G+ + VL + A G +S +R KG A N
Sbjct: 326 YLSLNRLGPPQQGLE---LGVGDGVLLKAVAQATGRQLES---IRAEVAEKGDVGLVAEN 379
Query: 105 FPMVAAEVLQRRQGMISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWI 164
+L +SG T + D+ RL S + ++K+ ++ L E ++I
Sbjct: 380 SRSTQRLMLPPPPLTVSGVFT--KFCDIA-RLTGSASMSKKMDIIKGLFVACRYSEARFI 436
Query: 165 IMIILKDLKLGISEKSI 181
+ L+LG++E+S+
Sbjct: 437 ARSLSGRLRLGLAEQSV 453
>UNIPROTKB|F1M8E6 [details] [associations]
symbol:Lig1 "DNA ligase" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 RGD:621424
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 IPI:IPI00553920 Ensembl:ENSRNOT00000064178
ArrayExpress:F1M8E6 Uniprot:F1M8E6
Length = 913
Score = 188 (71.2 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 71/263 (26%), Positives = 121/263 (46%)
Query: 221 GKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHK-NGSEIHYFSRSFLDHS- 278
G ++P LA ++ + E K+DG R QIH G E+ FSR+ D+S
Sbjct: 532 GVPLKPMLAHPTRGVREVLKRFEEVDFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNSG 591
Query: 279 EYGHAMSKIIE-QNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGL-SSDRQV 336
+Y +S+I + ++ V ILD E + WD + F Q + R + +S+ QV
Sbjct: 592 KYPDIISRIPKIKHPSVTSFILDTEAVAWDREKKQIQPF---QVLTTRKRKEVDASEIQV 648
Query: 337 -LCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPC 395
+C +AFD++Y+ S+ Q L R +LL++ ++G V L++ Q
Sbjct: 649 QVCLYAFDLIYLNGESLARQPLSRRRQLLRENFVETEGEF---VFATSLDTKDIEQ---- 701
Query: 396 WSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLD 454
+A + +E+ K++ E + D+ + +E RS WLKLK +Y+ G LD
Sbjct: 702 ---IA---EFLEQSVKDSCEGLM--VKTLDVDATYEIAKRSHNWLKLKKDYLEGVGDTLD 753
Query: 455 VLIIXXXXXXXXXXXEVAQFLVA 477
+++I FL+A
Sbjct: 754 LVVIGAYLGRGKRAGRYGGFLLA 776
Score = 168 (64.2 bits), Expect = 8.4e-10, Sum P(2) = 8.4e-10
Identities = 60/209 (28%), Positives = 97/209 (46%)
Query: 388 VRPQGEPCW--SLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLK 443
V +GE + SL +++++ +F ++++++ EG+++K D+ + +E RS WLKLK
Sbjct: 682 VETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLK 741
Query: 444 PEYIRA-GSDLDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLS 502
+Y+ G LD+++I FL+A A D + C++GTG S
Sbjct: 742 KDYLEGVGDTLDLVVIGAYLGRGKRAGRYGGFLLA-----AYDEESEELQAICKLGTGFS 796
Query: 503 DEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITS 558
DEEL+ ++ P P Y V + PD W++ K LS++
Sbjct: 797 DEELEEHHQSMQALL----LPTPRP---Y-VRIDGAVAPDHWLDPSVVWEVKCADLSLSP 848
Query: 559 DIRTIRSEVFSAP-YSLRFPRIDRVRYDK 586
R V SLRFPR RVR DK
Sbjct: 849 IYPAARGLVDKEKGISLRFPRFIRVREDK 877
Score = 65 (27.9 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 34/137 (24%), Positives = 57/137 (41%)
Query: 45 YFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGN 104
Y S RL P E G+ + VL + A G +S +R KG A N
Sbjct: 327 YLSLNRLGPPQQGLE---LGVGDGVLLKAVAQATGRQLES---IRAEVAEKGDVGLVAEN 380
Query: 105 FPMVAAEVLQRRQGMISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWI 164
+L +SG T + D+ RL S + ++K+ ++ L E ++I
Sbjct: 381 SRSTQRLMLPPPPLTVSGVFT--KFCDIA-RLTGSASMSKKMDIIKGLFVACRYSEARFI 437
Query: 165 IMIILKDLKLGISEKSI 181
+ L+LG++E+S+
Sbjct: 438 ARSLSGRLRLGLAEQSV 454
>TAIR|locus:2199953 [details] [associations]
symbol:LIG1 "DNA ligase 1" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003909 "DNA
ligase activity" evidence=IEA] [GO:0003910 "DNA ligase (ATP)
activity" evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0000012 "single strand break
repair" evidence=IMP] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0006302 "double-strand break repair" evidence=IMP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0016458 "gene
silencing" evidence=RCA] [GO:0016570 "histone modification"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] [GO:0048449 "floral organ formation" evidence=RCA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0007049 GO:GO:0006310 GO:GO:0006302
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000012
EMBL:AC011438 EMBL:AC026875 EMBL:X97924 EMBL:AK117238 EMBL:BT005964
EMBL:AK222166 IPI:IPI00535474 PIR:S71278 RefSeq:NP_172293.2
UniGene:At.36 ProteinModelPortal:Q42572 SMR:Q42572 STRING:Q42572
PaxDb:Q42572 PRIDE:Q42572 EnsemblPlants:AT1G08130.1 GeneID:837333
KEGG:ath:AT1G08130 TAIR:At1g08130 eggNOG:COG1793
HOGENOM:HOG000036006 InParanoid:Q42572 KO:K10747 OMA:AQVACLY
PhylomeDB:Q42572 ProtClustDB:PLN03113 Genevestigator:Q42572
GermOnline:AT1G08130 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
Uniprot:Q42572
Length = 790
Score = 206 (77.6 bits), Expect = 9.3e-12, Sum P(2) = 9.3e-12
Identities = 64/212 (30%), Positives = 103/212 (48%)
Query: 397 SLVAHNVDEVEKFFKETIENRDEGIVLKDLGSK--WEPGDRSGKWLKLKPEYIRA-GSDL 453
++ ++++DE++KF +++ EG+++K L S +EP RS WLKLK +Y+ + G +
Sbjct: 574 AVTSNDIDEIQKFLDASVDVGCEGLIIKTLDSDATYEPAKRSNNWLKLKKDYMDSIGDSV 633
Query: 454 DVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKL 513
D++ I FL+A D F S C++GTG SD LD + L
Sbjct: 634 DLVPIAAFHGRGKRTGVYGAFLLACY-----DVDKEEFQSICKIGTGFSDAMLDERSSSL 688
Query: 514 KPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITSDIRTIRSEVF- 568
+ + PK+ +Y+V ++ PDVW E E K+ L+I+ R V
Sbjct: 689 RS--QVIATPKQ----YYRVGDSLN--PDVWFEPTEVWEVKAADLTISPVHRAATGIVDP 740
Query: 569 SAPYSLRFPRIDRVRYDKPWHDCLDVQSFVEL 600
SLRFPR+ RVR DK + + +L
Sbjct: 741 DKGISLRFPRLLRVREDKKPEEATSSEQIADL 772
Score = 147 (56.8 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 70/277 (25%), Positives = 127/277 (45%)
Query: 214 KRQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIEC--KFDGDRIQIH--KNGS-EIH 268
K + +G + P LA K +++V C K+DG+R QIH ++G+ EI+
Sbjct: 406 KTCNFTLGVPIGPMLAKPTKGVAEILNKF--QDIVFTCEYKYDGERAQIHFMEDGTFEIY 463
Query: 269 YFS--RSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAA 326
+ R+ + + A+S++ + +V ILD E++ +D + F Q ++ A
Sbjct: 464 SRNAERNTGKYPDVALALSRLKKPSV--KSFILDCEVVAFDREKKKILPF---QILSTRA 518
Query: 327 RDGLS-SDRQV-LCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLE--TLVPDH 382
R ++ +D +V +C FAFD+LY+ +I ++LK R E L + + G + T V +
Sbjct: 519 RKNVNVNDIKVGVCIFAFDMLYLNGQQLIQENLKIRREKLYESFEEDPGYFQFATAVTSN 578
Query: 383 GLNSHVRPQGEPCWSLVAHNVDE-VEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLK 441
++ + + +VD E +T+ D + +EP RS WLK
Sbjct: 579 DIDEIQK--------FLDASVDVGCEGLIIKTL----------DSDATYEPAKRSNNWLK 620
Query: 442 LKPEYIRA-GSDLDVLIIXXXXXXXXXXXEVAQFLVA 477
LK +Y+ + G +D++ I FL+A
Sbjct: 621 LKKDYMDSIGDSVDLVPIAAFHGRGKRTGVYGAFLLA 657
Score = 43 (20.2 bits), Expect = 9.3e-12, Sum P(2) = 9.3e-12
Identities = 30/142 (21%), Positives = 61/142 (42%)
Query: 45 YFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGN 104
Y SA I P+ E G+ ES + + +A G ++D V+ N G+
Sbjct: 220 YLSANE-IAPA--HEGVELGIGESTIIKAISEAFGRTEDH---VKKQN-------TELGD 266
Query: 105 FPMVAAEVLQRRQGMISGG-LTIKELNDLLDRLASSE----NRAEKISVLSTLIKKTNAQ 159
+VA + M LT+ ++ D ++A N +K + + L+ T+ +
Sbjct: 267 LGLVAKGSRSTQTMMFKPEPLTVVKVFDTFRQIAKESGKDSNEKKKNRMKALLVATTDCE 326
Query: 160 EMKWIIMIILKDLKLGISEKSI 181
+ ++ ++ L+LG S +++
Sbjct: 327 PL-YLTRLLQAKLRLGFSGQTV 347
>UNIPROTKB|F1RL99 [details] [associations]
symbol:LIG1 "DNA ligase" species:9823 "Sus scrofa"
[GO:0042542 "response to hydrogen peroxide" evidence=IEA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003910 "DNA ligase (ATP) activity" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 OMA:AQVACLY
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556 EMBL:FP102640
Ensembl:ENSSSCT00000003469 Uniprot:F1RL99
Length = 915
Score = 184 (69.8 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 81/309 (26%), Positives = 139/309 (44%)
Query: 175 GISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGD 234
G+ K F E PD + + V + L E+L + H R + G ++P LA
Sbjct: 496 GMILKQTFCEV-PDLDRIVPVLLEHGL--ERLPE----HCR--LSPGVPLKPMLAHPTRG 546
Query: 235 AHAAWRKLHGKEVVIECKFDGDRIQIHK-NGSEIHYFSRSFLDHS-EYGHAMSKIIEQNV 292
++ E K+DG R QIH G E+ FSR+ D++ Y +S+I + +
Sbjct: 547 VSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGRYPDIISRIPKIKL 606
Query: 293 -LVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGL-SSDRQV-LCYFAFDVLYVGD 349
V ILD E + WD + F Q + R + +++ QV +C +AFD++Y+
Sbjct: 607 PSVTSFILDAEAVAWDREKKQIQPF---QVLTTRKRKEVDAAEIQVQVCLYAFDLIYLNG 663
Query: 350 TSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKF 409
S++ + L R +LL++ ++G V L++ Q +A + +E+
Sbjct: 664 ESLVREPLSRRRQLLRENFVETEGEF---VFATSLDTKDTDQ-------IA---EFLEQS 710
Query: 410 FKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIXXXXXXXXXX 468
K++ E + D+ + +E RS WLKLK +Y+ SD LD+++I
Sbjct: 711 VKDSCEGLM--VKTLDVDATYEIAKRSHNWLKLKKDYLDGVSDTLDLVVIGAYLGRGKRA 768
Query: 469 XEVAQFLVA 477
FL+A
Sbjct: 769 GRYGGFLLA 777
Score = 183 (69.5 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 64/209 (30%), Positives = 102/209 (48%)
Query: 388 VRPQGEPCW--SLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLK 443
V +GE + SL + D++ +F ++++++ EG+++K D+ + +E RS WLKLK
Sbjct: 683 VETEGEFVFATSLDTKDTDQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLK 742
Query: 444 PEYIRAGSD-LDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLS 502
+Y+ SD LD+++I FL+A + + + + C++GTG S
Sbjct: 743 KDYLDGVSDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEESEELQ-----AICKLGTGFS 797
Query: 503 DEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITS 558
DEEL+A L+ P AP S+ V + PD W++ K LS++
Sbjct: 798 DEELEAHHQSLQALV----LP--APRSY--VRADGAVAPDHWLDPSAVWEVKCADLSLSP 849
Query: 559 DIRTIRSEVFSAP-YSLRFPRIDRVRYDK 586
R V S SLRFPR RVR DK
Sbjct: 850 IYPAARGLVDSEKGISLRFPRFIRVRDDK 878
Score = 67 (28.6 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 34/137 (24%), Positives = 58/137 (42%)
Query: 45 YFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGN 104
Y S RL P E G+ + +L + A G +S VR KG A +
Sbjct: 328 YLSLNRLGPPQQGLE---LGIGDGILLKAVAQATGRQLES---VRAEVAEKGDVGLVAES 381
Query: 105 FPMVAAEVLQRRQGMISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWI 164
VL + + G+ K D+ +LA S + A+K+ ++ L E ++I
Sbjct: 382 SRSTQRLVLPP-PALTAAGIFTK-FRDIA-QLAGSASTAKKMEIIKGLFVACRHSEARFI 438
Query: 165 IMIILKDLKLGISEKSI 181
+ L+LG++E+S+
Sbjct: 439 ARALSGRLRLGLAEQSV 455
>UNIPROTKB|Q2TB12 [details] [associations]
symbol:LIG1 "DNA ligase" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 PROSITE:PS00333 PROSITE:PS00697
PROSITE:PS50160 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 IPI:IPI00219841 UniGene:Hs.1770
HOVERGEN:HBG005514 ChiTaRS:LIG1 EMBL:BC110622
ProteinModelPortal:Q2TB12 SMR:Q2TB12 STRING:Q2TB12 PRIDE:Q2TB12
ArrayExpress:Q2TB12 Uniprot:Q2TB12
Length = 801
Score = 179 (68.1 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 80/309 (25%), Positives = 139/309 (44%)
Query: 175 GISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGD 234
G+ K F E PD + + V + L E+L + H + + G ++P LA
Sbjct: 500 GMILKQTFCEV-PDLDRIIPVLLEHGL--ERLPE----HCK--LSPGIPLKPMLAHPTRG 550
Query: 235 AHAAWRKLHGKEVVIECKFDGDRIQIHK-NGSEIHYFSRSFLDHS-EYGHAMSKIIEQNV 292
++ E K+DG R QIH G E+ FSR+ D++ +Y +S+I + +
Sbjct: 551 ISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKL 610
Query: 293 -LVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGL-SSDRQV-LCYFAFDVLYVGD 349
V ILD E + WD + F Q + R + +S+ QV +C +AFD++Y+
Sbjct: 611 PSVTSFILDTEAVAWDREKKQIQPF---QVLTTRKRKEVDASEIQVQVCLYAFDLIYLNG 667
Query: 350 TSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKF 409
S++ + L R +LL++ ++G V L++ Q +A + +E+
Sbjct: 668 ESLVREPLSRRRQLLRENFVETEGEF---VFATSLDTKDIEQ-------IA---EFLEQS 714
Query: 410 FKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLIIXXXXXXXXXX 468
K++ E + D+ + +E RS WLKLK +Y+ G LD+++I
Sbjct: 715 VKDSCEGLM--VKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRA 772
Query: 469 XEVAQFLVA 477
FL+A
Sbjct: 773 GRYGGFLLA 781
Score = 68 (29.0 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 30/118 (25%), Positives = 49/118 (41%)
Query: 64 GLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMISGG 123
G+ + VL + A G +S VR KG A N +L SG
Sbjct: 348 GVGDGVLLKAVAQATGRQLES---VRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASG- 403
Query: 124 LTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSI 181
+ D+ RL S + A+KI ++ L E ++I + L+LG++E+S+
Sbjct: 404 -VFSKFRDIA-RLTGSASTAKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSV 459
>UNIPROTKB|F5GZ28 [details] [associations]
symbol:LIG1 "DNA ligase" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC011466 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 HGNC:HGNC:6598 ChiTaRS:LIG1 IPI:IPI01010243
ProteinModelPortal:F5GZ28 SMR:F5GZ28 Ensembl:ENST00000536218
UCSC:uc010xzf.1 ArrayExpress:F5GZ28 Bgee:F5GZ28 Uniprot:F5GZ28
Length = 851
Score = 179 (68.1 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 80/309 (25%), Positives = 139/309 (44%)
Query: 175 GISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGD 234
G+ K F E PD + + V + L E+L + H + + G ++P LA
Sbjct: 432 GMILKQTFCEV-PDLDRIIPVLLEHGL--ERLPE----HCK--LSPGIPLKPMLAHPTRG 482
Query: 235 AHAAWRKLHGKEVVIECKFDGDRIQIHK-NGSEIHYFSRSFLDHS-EYGHAMSKIIEQNV 292
++ E K+DG R QIH G E+ FSR+ D++ +Y +S+I + +
Sbjct: 483 ISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKL 542
Query: 293 -LVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGL-SSDRQV-LCYFAFDVLYVGD 349
V ILD E + WD + F Q + R + +S+ QV +C +AFD++Y+
Sbjct: 543 PSVTSFILDTEAVAWDREKKQIQPF---QVLTTRKRKEVDASEIQVQVCLYAFDLIYLNG 599
Query: 350 TSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKF 409
S++ + L R +LL++ ++G V L++ Q +A + +E+
Sbjct: 600 ESLVREPLSRRRQLLRENFVETEGEF---VFATSLDTKDIEQ-------IA---EFLEQS 646
Query: 410 FKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLIIXXXXXXXXXX 468
K++ E + D+ + +E RS WLKLK +Y+ G LD+++I
Sbjct: 647 VKDSCEGLM--VKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRA 704
Query: 469 XEVAQFLVA 477
FL+A
Sbjct: 705 GRYGGFLLA 713
Score = 175 (66.7 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 68/244 (27%), Positives = 110/244 (45%)
Query: 388 VRPQGEPCW--SLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLK 443
V +GE + SL +++++ +F ++++++ EG+++K D+ + +E RS WLKLK
Sbjct: 619 VETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLK 678
Query: 444 PEYIRA-GSDLDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLS 502
+Y+ G LD+++I FL+A + + + + C++GTG S
Sbjct: 679 KDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDSEELQ-----AICKLGTGFS 733
Query: 503 DEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITS 558
DEEL+ LK P P Y V + PD W++ K LS++
Sbjct: 734 DEELEEHHQSLKALV----LPSPRP---Y-VRIDGAVIPDHWLDPSAVWEVKCADLSLSP 785
Query: 559 DIRTIRSEVFSAP-YSLRFPRIDRVRYDK-PWHDCLDVQSFVELVHSSNGTTQKGKEYGG 616
R V S SLRFPR RVR DK P Q S Q+G++ G
Sbjct: 786 IYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQSQIQNQQGEDSGS 845
Query: 617 LQDD 620
+D
Sbjct: 846 DPED 849
Score = 68 (29.0 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 30/118 (25%), Positives = 49/118 (41%)
Query: 64 GLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMISGG 123
G+ + VL + A G +S VR KG A N +L SG
Sbjct: 280 GVGDGVLLKAVAQATGRQLES---VRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASG- 335
Query: 124 LTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSI 181
+ D+ RL S + A+KI ++ L E ++I + L+LG++E+S+
Sbjct: 336 -VFSKFRDIA-RLTGSASTAKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSV 391
>UNIPROTKB|B4DTU4 [details] [associations]
symbol:LIG1 "DNA ligase" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC011466 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 UniGene:Hs.1770 HGNC:HGNC:6598
HOVERGEN:HBG005514 ChiTaRS:LIG1 EMBL:AK300370 IPI:IPI01011603
SMR:B4DTU4 STRING:B4DTU4 Ensembl:ENST00000427526 UCSC:uc010xzg.1
Uniprot:B4DTU4
Length = 888
Score = 179 (68.1 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 80/309 (25%), Positives = 139/309 (44%)
Query: 175 GISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGD 234
G+ K F E PD + + V + L E+L + H + + G ++P LA
Sbjct: 469 GMILKQTFCEV-PDLDRIIPVLLEHGL--ERLPE----HCK--LSPGIPLKPMLAHPTRG 519
Query: 235 AHAAWRKLHGKEVVIECKFDGDRIQIHK-NGSEIHYFSRSFLDHS-EYGHAMSKIIEQNV 292
++ E K+DG R QIH G E+ FSR+ D++ +Y +S+I + +
Sbjct: 520 ISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKL 579
Query: 293 -LVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGL-SSDRQV-LCYFAFDVLYVGD 349
V ILD E + WD + F Q + R + +S+ QV +C +AFD++Y+
Sbjct: 580 PSVTSFILDTEAVAWDREKKQIQPF---QVLTTRKRKEVDASEIQVQVCLYAFDLIYLNG 636
Query: 350 TSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKF 409
S++ + L R +LL++ ++G V L++ Q +A + +E+
Sbjct: 637 ESLVREPLSRRRQLLRENFVETEGEF---VFATSLDTKDIEQ-------IA---EFLEQS 683
Query: 410 FKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLIIXXXXXXXXXX 468
K++ E + D+ + +E RS WLKLK +Y+ G LD+++I
Sbjct: 684 VKDSCEGLM--VKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRA 741
Query: 469 XEVAQFLVA 477
FL+A
Sbjct: 742 GRYGGFLLA 750
Score = 175 (66.7 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 68/244 (27%), Positives = 110/244 (45%)
Query: 388 VRPQGEPCW--SLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLK 443
V +GE + SL +++++ +F ++++++ EG+++K D+ + +E RS WLKLK
Sbjct: 656 VETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLK 715
Query: 444 PEYIRA-GSDLDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLS 502
+Y+ G LD+++I FL+A + + + + C++GTG S
Sbjct: 716 KDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDSEELQ-----AICKLGTGFS 770
Query: 503 DEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITS 558
DEEL+ LK P P Y V + PD W++ K LS++
Sbjct: 771 DEELEEHHQSLKALV----LPSPRP---Y-VRIDGAVIPDHWLDPSAVWEVKCADLSLSP 822
Query: 559 DIRTIRSEVFSAP-YSLRFPRIDRVRYDK-PWHDCLDVQSFVELVHSSNGTTQKGKEYGG 616
R V S SLRFPR RVR DK P Q S Q+G++ G
Sbjct: 823 IYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQSQIQNQQGEDSGS 882
Query: 617 LQDD 620
+D
Sbjct: 883 DPED 886
Score = 68 (29.0 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 30/118 (25%), Positives = 49/118 (41%)
Query: 64 GLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMISGG 123
G+ + VL + A G +S VR KG A N +L SG
Sbjct: 317 GVGDGVLLKAVAQATGRQLES---VRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASG- 372
Query: 124 LTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSI 181
+ D+ RL S + A+KI ++ L E ++I + L+LG++E+S+
Sbjct: 373 -VFSKFRDIA-RLTGSASTAKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSV 428
>UNIPROTKB|P18858 [details] [associations]
symbol:LIG1 "DNA ligase 1" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0042542 "response to hydrogen peroxide"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA;TAS] [GO:0003909 "DNA
ligase activity" evidence=IDA] [GO:0033151 "V(D)J recombination"
evidence=IDA] [GO:0006259 "DNA metabolic process" evidence=TAS]
[GO:0009653 "anatomical structure morphogenesis" evidence=TAS]
[GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
[GO:0000278 "mitotic cell cycle" evidence=TAS] [GO:0000722
"telomere maintenance via recombination" evidence=TAS] [GO:0000723
"telomere maintenance" evidence=TAS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006284
"base-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0006302 "double-strand break repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] Reactome:REACT_216 InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739
GO:GO:0005524 GO:GO:0005694 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0051301 GO:GO:0046872 GO:GO:0006284 GO:GO:0003677
GO:GO:0000724 EMBL:CH471177 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0009653 GO:GO:0000084 GO:GO:0000722
Reactome:REACT_383 GO:GO:0006283 DrugBank:DB00290 GO:GO:0032201
GO:GO:0006273 eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747
OMA:AQVACLY GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 EMBL:M36067 EMBL:AF527418
EMBL:AK314210 EMBL:BC108318 IPI:IPI00219841 PIR:A36048
RefSeq:NP_000225.1 UniGene:Hs.1770 PDB:1X9N PDBsum:1X9N
ProteinModelPortal:P18858 SMR:P18858 DIP:DIP-24215N IntAct:P18858
MINT:MINT-141868 STRING:P18858 PhosphoSite:P18858 DMDM:118773
PaxDb:P18858 PeptideAtlas:P18858 PRIDE:P18858
Ensembl:ENST00000263274 GeneID:3978 KEGG:hsa:3978 UCSC:uc002pia.1
CTD:3978 GeneCards:GC19M048618 HGNC:HGNC:6598 HPA:CAB037015
MIM:126391 neXtProt:NX_P18858 PharmGKB:PA30372 HOVERGEN:HBG005514
InParanoid:P18858 OrthoDB:EOG4RBQJ6 PhylomeDB:P18858
BindingDB:P18858 ChEMBL:CHEMBL5694 ChiTaRS:LIG1
EvolutionaryTrace:P18858 GenomeRNAi:3978 NextBio:15592
ArrayExpress:P18858 Bgee:P18858 CleanEx:HS_LIG1
Genevestigator:P18858 GermOnline:ENSG00000105486 GO:GO:0006297
Uniprot:P18858
Length = 919
Score = 179 (68.1 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 80/309 (25%), Positives = 139/309 (44%)
Query: 175 GISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGD 234
G+ K F E PD + + V + L E+L + H + + G ++P LA
Sbjct: 500 GMILKQTFCEV-PDLDRIIPVLLEHGL--ERLPE----HCK--LSPGIPLKPMLAHPTRG 550
Query: 235 AHAAWRKLHGKEVVIECKFDGDRIQIHK-NGSEIHYFSRSFLDHS-EYGHAMSKIIEQNV 292
++ E K+DG R QIH G E+ FSR+ D++ +Y +S+I + +
Sbjct: 551 ISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKL 610
Query: 293 -LVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGL-SSDRQV-LCYFAFDVLYVGD 349
V ILD E + WD + F Q + R + +S+ QV +C +AFD++Y+
Sbjct: 611 PSVTSFILDTEAVAWDREKKQIQPF---QVLTTRKRKEVDASEIQVQVCLYAFDLIYLNG 667
Query: 350 TSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKF 409
S++ + L R +LL++ ++G V L++ Q +A + +E+
Sbjct: 668 ESLVREPLSRRRQLLRENFVETEGEF---VFATSLDTKDIEQ-------IA---EFLEQS 714
Query: 410 FKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLIIXXXXXXXXXX 468
K++ E + D+ + +E RS WLKLK +Y+ G LD+++I
Sbjct: 715 VKDSCEGLM--VKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRA 772
Query: 469 XEVAQFLVA 477
FL+A
Sbjct: 773 GRYGGFLLA 781
Score = 175 (66.7 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 68/244 (27%), Positives = 110/244 (45%)
Query: 388 VRPQGEPCW--SLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLK 443
V +GE + SL +++++ +F ++++++ EG+++K D+ + +E RS WLKLK
Sbjct: 687 VETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLK 746
Query: 444 PEYIRA-GSDLDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLS 502
+Y+ G LD+++I FL+A + + + + C++GTG S
Sbjct: 747 KDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDSEELQ-----AICKLGTGFS 801
Query: 503 DEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITS 558
DEEL+ LK P P Y V + PD W++ K LS++
Sbjct: 802 DEELEEHHQSLKALV----LPSPRP---Y-VRIDGAVIPDHWLDPSAVWEVKCADLSLSP 853
Query: 559 DIRTIRSEVFSAP-YSLRFPRIDRVRYDK-PWHDCLDVQSFVELVHSSNGTTQKGKEYGG 616
R V S SLRFPR RVR DK P Q S Q+G++ G
Sbjct: 854 IYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQSQIQNQQGEDSGS 913
Query: 617 LQDD 620
+D
Sbjct: 914 DPED 917
Score = 68 (29.0 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 30/118 (25%), Positives = 49/118 (41%)
Query: 64 GLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMISGG 123
G+ + VL + A G +S VR KG A N +L SG
Sbjct: 348 GVGDGVLLKAVAQATGRQLES---VRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASG- 403
Query: 124 LTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSI 181
+ D+ RL S + A+KI ++ L E ++I + L+LG++E+S+
Sbjct: 404 -VFSKFRDIA-RLTGSASTAKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSV 459
>RGD|621424 [details] [associations]
symbol:Lig1 "ligase I, DNA, ATP-dependent" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003909
"DNA ligase activity" evidence=ISO;IDA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IBA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005694
"chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006260 "DNA replication" evidence=ISO]
[GO:0006273 "lagging strand elongation" evidence=IBA] [GO:0006281
"DNA repair" evidence=ISO;IDA] [GO:0006289 "nucleotide-excision
repair" evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0042542 "response to hydrogen peroxide" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=ISO] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 RGD:621424 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0005694 GO:GO:0051301
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0007049
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006273 eggNOG:COG1793 HOGENOM:HOG000036006 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 HOVERGEN:HBG005514 OrthoDB:EOG4RBQJ6
EMBL:AF276774 IPI:IPI00200072 UniGene:Rn.20467
ProteinModelPortal:Q9JHY8 SMR:Q9JHY8 STRING:Q9JHY8
PhosphoSite:Q9JHY8 PRIDE:Q9JHY8 UCSC:RGD:621424 InParanoid:Q9JHY8
NextBio:614997 ArrayExpress:Q9JHY8 Genevestigator:Q9JHY8
GermOnline:ENSRNOG00000014193 Uniprot:Q9JHY8
Length = 918
Score = 177 (67.4 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 70/263 (26%), Positives = 120/263 (45%)
Query: 221 GKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHK-NGSEIHYFSRSFLDHS- 278
G ++P LA ++ + E K+ G R QIH G E+ FSR+ D+S
Sbjct: 537 GVPLKPMLAHPTRGVREVLKRFEEVDFTCEYKYYGQRAQIHVLEGGEVKIFSRNQEDNSG 596
Query: 279 EYGHAMSKIIE-QNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGL-SSDRQV 336
+Y +S+I + ++ V ILD E + WD + F Q + R + +S+ QV
Sbjct: 597 KYPDIISRIPKIKHPSVTSFILDTEAVAWDREKKQIQPF---QVLTTRKRKEVDASEIQV 653
Query: 337 -LCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPC 395
+C +AFD++Y+ S+ Q L R +LL++ ++G V L++ Q
Sbjct: 654 QVCLYAFDLIYLNGESLARQPLSRRRQLLRENFVETEGEF---VFATSLDTKDIEQ---- 706
Query: 396 WSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLD 454
+A + +E+ K++ E + D+ + +E RS WLKLK +Y+ G LD
Sbjct: 707 ---IA---EFLEQSVKDSCEGLM--VKTLDVDATYEIAKRSHNWLKLKKDYLEGVGDTLD 758
Query: 455 VLIIXXXXXXXXXXXEVAQFLVA 477
+++I FL+A
Sbjct: 759 LVVIGAYLGRGKRPGRYGGFLLA 781
Score = 168 (64.2 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 59/209 (28%), Positives = 98/209 (46%)
Query: 388 VRPQGEPCW--SLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLK 443
V +GE + SL +++++ +F ++++++ EG+++K D+ + +E RS WLKLK
Sbjct: 687 VETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLK 746
Query: 444 PEYIRA-GSDLDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLS 502
+Y+ G LD+++I FL+A A D + C++GTG S
Sbjct: 747 KDYLEGVGDTLDLVVIGAYLGRGKRPGRYGGFLLA-----AYDEESEELAAICKLGTGFS 801
Query: 503 DEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESP----EKSIILSITS 558
DEEL+ ++ P P Y V + P+ W++ K L+++
Sbjct: 802 DEELEEHHQNMQALL----LPTPRP---Y-VRIDGAVAPNHWLDPSIVWEVKCADLTLSP 853
Query: 559 DIRTIRSEVFSAP-YSLRFPRIDRVRYDK 586
R R V SLRFPR RVR DK
Sbjct: 854 IYRAARGMVDKEKGISLRFPRFIRVREDK 882
Score = 69 (29.3 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 35/137 (25%), Positives = 57/137 (41%)
Query: 45 YFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGN 104
Y S RL P E G+ + VL + A G +S +R KG A N
Sbjct: 332 YLSLNRLGPPQQGLE---LGVGDGVLLKAVAQATGRQLES---IRAEVAEKGDVGLVAEN 385
Query: 105 FPMVAAEVLQRRQGMISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWI 164
+L +SG T + D+ RL S + A+K+ ++ L E ++I
Sbjct: 386 SRSTQRLMLPSPPLTVSGVFT--KFCDIA-RLTGSASMAKKMDIIKGLFVACRYSEARFI 442
Query: 165 IMIILKDLKLGISEKSI 181
+ L+LG++E+S+
Sbjct: 443 ARSLSGRLRLGLAEQSV 459
>UNIPROTKB|Q7S2S0 [details] [associations]
symbol:NCU09706 "DNA ligase" species:367110 "Neurospora
crassa OR74A" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524 GO:GO:0005634
GO:GO:0005694 GO:GO:0003677 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273
eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OrthoDB:EOG4SFDF2 EMBL:AABX02000084
RefSeq:XP_958945.2 ProteinModelPortal:Q7S2S0
EnsemblFungi:EFNCRT00000009526 GeneID:3875111 KEGG:ncr:NCU09706
OMA:MSGFTDS Uniprot:Q7S2S0
Length = 853
Score = 148 (57.2 bits), Expect = 9.6e-11, Sum P(2) = 9.6e-11
Identities = 78/350 (22%), Positives = 154/350 (44%)
Query: 124 LTIKELNDLLDRLASSENRAE---KISVLSTLIKKTNA-QEMKWIIMIILKDLK------ 173
LTIK + L +++ ++ + K ++ L++ +E ++++ + + LK
Sbjct: 266 LTIKGVFQSLVKISKTQGQGSGDAKQRIVDKLLQDARGGEESRYVVRTLCQHLKKEELAE 325
Query: 174 -LGISEKSIFHEF--HPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAM 230
+E+ + + HPD DL V + V E+L R + + +RP L
Sbjct: 326 VYAKAEEIVKASYARHPDYNDLVPVLLETG-VSEELL------VRCGLTLHIPLRPMLGG 378
Query: 231 RIGDAHAAWRKLHGKEVVIECKFDGDRIQIH-KNGSEIHYFSRSF-LDHSEYGHAMSKII 288
D +L G++ E K+DG R QIH + + FSR L +Y ++ +
Sbjct: 379 ITRDLSEMLSRLQGRDFACEYKYDGQRAQIHCDDRGVVSIFSRHLELMTDKYPDLVALVP 438
Query: 289 E-QNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVL--CYFAFDVL 345
+ + V I++GE++ D + F Q + AR ++ + C FAFD++
Sbjct: 439 KIRGEDVQSFIMEGEVVAVDRATGELKNF---QTLTNRARKDVAIGAITIDVCLFAFDLM 495
Query: 346 YVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDE 405
Y+ ++++S +ER ++L+ + +E +P H + V+ + +
Sbjct: 496 YLNGQPLLNRSFRERRDMLRSLF------ME--IPHHF--TWVKSI-----DATSQESEI 540
Query: 406 VEKFFKETIENRDEGIVLKDLGSKWE---PGDRSGKWLKLKPEYIRAGSD 452
V +FFK ++++ EGI++K L + E PG + E + SD
Sbjct: 541 VLEFFKSAVDSKCEGIMVKILDNLPELEAPGPDDSTDPIIPTELVATSSD 590
Score = 94 (38.1 bits), Expect = 9.6e-11, Sum P(2) = 9.6e-11
Identities = 51/177 (28%), Positives = 70/177 (39%)
Query: 424 KDLGSKWEPGDRSGKWLKLKPEYI--RAGSD-LDVLIIXXXXXXXXXXXEVAQFLVALAE 480
K L + +EP R WLK+K +YI AG D LD++ I + L+A+
Sbjct: 633 KPLLATYEPDKRLDSWLKVKKDYIGTSAGVDTLDLIPIAAWHGTGRKAKWWSPILLAVRN 692
Query: 481 RPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKR---APPSFYQVTNNS 537
+T + C G S + + V F PK A P F + +
Sbjct: 693 E---ETGSLEAVCKCMSGFTDSFYKANREVYDKDGSFSSDGEPKNVHVAKPGFVEYAGGN 749
Query: 538 KERPDVWIESPE------KSIILS--ITSDIRTIRSEVFSAPYSLRFPRIDRVRYDK 586
PDVW E E I +S T+ I +R + SLRFPR R R DK
Sbjct: 750 ---PDVWFEPQEVWEVAFADITISPTYTAAIGLVRED---KGLSLRFPRFLRKREDK 800
Score = 44 (20.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 620 DKPKQFRSSRKGEKKNVSIVPSHFLQTDVS--DIKGETSIFSDMVFYFVNVPPAYS 673
DK F S GE KNV + F++ D+ E ++ F + + P Y+
Sbjct: 721 DKDGSFSSD--GEPKNVHVAKPGFVEYAGGNPDVWFEPQEVWEVAFADITISPTYT 774
>ASPGD|ASPL0000077573 [details] [associations]
symbol:AN4883 species:162425 "Emericella nidulans"
[GO:0003910 "DNA ligase (ATP) activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 GO:GO:0006310
EMBL:BN001303 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AACD01000084 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
HOGENOM:HOG000036006 KO:K10747 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 OMA:GAVKTTM
OrthoDB:EOG4SFDF2 RefSeq:XP_662487.1 ProteinModelPortal:Q5B3J7
EnsemblFungi:CADANIAT00005522 GeneID:2872686 KEGG:ani:AN4883.2
Uniprot:Q5B3J7
Length = 816
Score = 159 (61.0 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 68/245 (27%), Positives = 112/245 (45%)
Query: 186 HPDAEDLFNVTCDLKL-VCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWRKLHG 244
HP+ DL V C L++ V E+L R +++ + P L D KL G
Sbjct: 368 HPNYNDL--VPCLLEIGVTEELL------LRCGLQLHIPLMPMLGSITRDLSEMLTKLQG 419
Query: 245 KEVVIECKFDGDRIQIH-KNGSEIHYFSRSFLDHSE-YGHAMSKIIE-QNVLVDRCILDG 301
++ E K+DG R Q+H ++ FSR + +E Y +S + + + V IL+G
Sbjct: 420 RDFTCEFKYDGQRAQVHCDEAGKVSIFSRHLEEMTEKYPDLVSLVPQIRGEGVSSFILEG 479
Query: 302 EMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERH 361
E++ D + F AK D + + +C FAFD++Y+ ++ +SL+ER
Sbjct: 480 EVVAVDQN-GELQPFQILTNRAKKNVD-IGEIKINVCLFAFDLMYLNGAPLLERSLRERR 537
Query: 362 ELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGI 421
ELL+ + R T V L++ + + + V FFK EN+ EGI
Sbjct: 538 ELLRSLFMEIPNRF-TWVKS--LDA------------TSADSEAVLDFFKSATENKCEGI 582
Query: 422 VLKDL 426
++K L
Sbjct: 583 MVKVL 587
Score = 77 (32.2 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 35/131 (26%), Positives = 56/131 (42%)
Query: 424 KDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIXXXXXXXXXXXEVAQFLVALAERPA 483
K L S +EP R WLK+K +Y + LD++ + + L+A+
Sbjct: 621 KALLSSYEPDKRLESWLKVKKDYSASSETLDLIPVAGWHGNGRKAKWWSPILLAVRN--- 677
Query: 484 PDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAP-----PSFYQVTNNSK 538
P+T + ++ C +G SD+ A K +Y + +P PS+ V N +
Sbjct: 678 PETGGLQAVTKCM--SGFSDKFYQA---------NKEKYEEGSPNVISRPSY--VEYNGE 724
Query: 539 ERPDVWIESPE 549
PDVW E E
Sbjct: 725 --PDVWFEPQE 733
>UNIPROTKB|Q5B3J7 [details] [associations]
symbol:AN4883.2 "DNA ligase" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA]
[GO:0006273 "lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524 GO:GO:0005634
GO:GO:0005694 GO:GO:0003677 GO:GO:0006310 EMBL:BN001303
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AACD01000084 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
HOGENOM:HOG000036006 KO:K10747 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 OMA:GAVKTTM
OrthoDB:EOG4SFDF2 RefSeq:XP_662487.1 ProteinModelPortal:Q5B3J7
EnsemblFungi:CADANIAT00005522 GeneID:2872686 KEGG:ani:AN4883.2
Uniprot:Q5B3J7
Length = 816
Score = 159 (61.0 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 68/245 (27%), Positives = 112/245 (45%)
Query: 186 HPDAEDLFNVTCDLKL-VCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWRKLHG 244
HP+ DL V C L++ V E+L R +++ + P L D KL G
Sbjct: 368 HPNYNDL--VPCLLEIGVTEELL------LRCGLQLHIPLMPMLGSITRDLSEMLTKLQG 419
Query: 245 KEVVIECKFDGDRIQIH-KNGSEIHYFSRSFLDHSE-YGHAMSKIIE-QNVLVDRCILDG 301
++ E K+DG R Q+H ++ FSR + +E Y +S + + + V IL+G
Sbjct: 420 RDFTCEFKYDGQRAQVHCDEAGKVSIFSRHLEEMTEKYPDLVSLVPQIRGEGVSSFILEG 479
Query: 302 EMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERH 361
E++ D + F AK D + + +C FAFD++Y+ ++ +SL+ER
Sbjct: 480 EVVAVDQN-GELQPFQILTNRAKKNVD-IGEIKINVCLFAFDLMYLNGAPLLERSLRERR 537
Query: 362 ELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGI 421
ELL+ + R T V L++ + + + V FFK EN+ EGI
Sbjct: 538 ELLRSLFMEIPNRF-TWVKS--LDA------------TSADSEAVLDFFKSATENKCEGI 582
Query: 422 VLKDL 426
++K L
Sbjct: 583 MVKVL 587
Score = 77 (32.2 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 35/131 (26%), Positives = 56/131 (42%)
Query: 424 KDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIXXXXXXXXXXXEVAQFLVALAERPA 483
K L S +EP R WLK+K +Y + LD++ + + L+A+
Sbjct: 621 KALLSSYEPDKRLESWLKVKKDYSASSETLDLIPVAGWHGNGRKAKWWSPILLAVRN--- 677
Query: 484 PDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAP-----PSFYQVTNNSK 538
P+T + ++ C +G SD+ A K +Y + +P PS+ V N +
Sbjct: 678 PETGGLQAVTKCM--SGFSDKFYQA---------NKEKYEEGSPNVISRPSY--VEYNGE 724
Query: 539 ERPDVWIESPE 549
PDVW E E
Sbjct: 725 --PDVWFEPQE 733
>WB|WBGene00002985 [details] [associations]
symbol:lig-1 species:6239 "Caenorhabditis elegans"
[GO:0003910 "DNA ligase (ATP) activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003909 "DNA ligase activity" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0005694
GO:GO:0046872 GO:GO:0003677 GO:GO:0007049 GO:GO:0000910
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006273 eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747
OMA:AQVACLY GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 EMBL:Z73970 PIR:T19544
RefSeq:NP_741625.2 RefSeq:NP_741626.2 ProteinModelPortal:Q27474
SMR:Q27474 STRING:Q27474 PaxDb:Q27474 PRIDE:Q27474
EnsemblMetazoa:C29A12.3a GeneID:179502 KEGG:cel:CELE_C29A12.3
UCSC:C29A12.3a CTD:179502 WormBase:C29A12.3a WormBase:C29A12.3b
GeneTree:ENSGT00700000104556 InParanoid:Q27474 NextBio:905678
Uniprot:Q27474
Length = 773
Score = 189 (71.6 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 65/272 (23%), Positives = 120/272 (44%)
Query: 397 SLVAHNVDEVEKFFKETIENRDEGIVLKDLGSK--WEPGDRSGKWLKLKPEYIRA-GSDL 453
S+ ++ DE+ FF E ++N+ EG+++K L ++ +E RS WLK+K +Y+ G L
Sbjct: 417 SVDTNDTDEINSFFDEAVQNKCEGLMIKTLDTEATYEISRRSHSWLKMKKDYVDGVGDTL 476
Query: 454 DVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEEL------- 506
D++++ +L+ P + Y S C++GTG +DE+L
Sbjct: 477 DLVVMGAYSGVGKRTGVYGGYLLG-CYNPTTEEYE----SVCKIGTGFTDEDLAEQYKIL 531
Query: 507 -DAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRS 565
D + K Y++ +++ + +F + D+ I SP +T D + I
Sbjct: 532 QDKKIDKSPSYYQ-FDHTLKPDDTFSPYLVFEVKCADITI-SPRHKAASGLTDDGKGI-- 587
Query: 566 EVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNG-TTQKGKEYGGLQDDKPKQ 624
SLRFPR R+R DK D + +E+ + QK ++ + +D +
Sbjct: 588 -------SLRFPRFLRIRDDKNSDDATSSEQVLEMYKNQEAFANQKIEKADAVDEDDEFE 640
Query: 625 FRSSRKGEKKNVSIVPSHFLQTDVSD-IKGET 655
+ + E ++ + V + IK ET
Sbjct: 641 EKEDEEEELNMTNVSEGSSKENPVKEEIKKET 672
Score = 47 (21.6 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 20/88 (22%), Positives = 38/88 (43%)
Query: 1038 DDEENLETRQTNVVEDLESLDRGKALQQEVVKDFGKE---KQTVRAPDIEMRERYHSKDS 1094
+DEE E TNV E + +++E+ K+ K K+ + P ++ S
Sbjct: 643 EDEEE-ELNMTNVSE---GSSKENPVKEEIKKETPKSVSPKKFEKKPPVKSSPVNKSPVK 698
Query: 1095 ETTDKQQVDAVQAMLLDMIPSLGMKNEK 1122
+ K++ + + + + S KNEK
Sbjct: 699 SSPIKKEAEKKKGPVASIFSSSTKKNEK 726
Score = 38 (18.4 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 201 LVCEKLKD--RNQRHKRQDIEV 220
+ CE D R Q HKR+D ++
Sbjct: 284 MTCEWKYDGERGQIHKREDGQI 305
>UNIPROTKB|Q27474 [details] [associations]
symbol:lig-1 "DNA ligase 1" species:6239 "Caenorhabditis
elegans" [GO:0006289 "nucleotide-excision repair" evidence=IBA]
[GO:0006273 "lagging strand elongation" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0005694
GO:GO:0046872 GO:GO:0003677 GO:GO:0007049 GO:GO:0000910
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006273 eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747
OMA:AQVACLY GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 EMBL:Z73970 PIR:T19544
RefSeq:NP_741625.2 RefSeq:NP_741626.2 ProteinModelPortal:Q27474
SMR:Q27474 STRING:Q27474 PaxDb:Q27474 PRIDE:Q27474
EnsemblMetazoa:C29A12.3a GeneID:179502 KEGG:cel:CELE_C29A12.3
UCSC:C29A12.3a CTD:179502 WormBase:C29A12.3a WormBase:C29A12.3b
GeneTree:ENSGT00700000104556 InParanoid:Q27474 NextBio:905678
Uniprot:Q27474
Length = 773
Score = 189 (71.6 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 65/272 (23%), Positives = 120/272 (44%)
Query: 397 SLVAHNVDEVEKFFKETIENRDEGIVLKDLGSK--WEPGDRSGKWLKLKPEYIRA-GSDL 453
S+ ++ DE+ FF E ++N+ EG+++K L ++ +E RS WLK+K +Y+ G L
Sbjct: 417 SVDTNDTDEINSFFDEAVQNKCEGLMIKTLDTEATYEISRRSHSWLKMKKDYVDGVGDTL 476
Query: 454 DVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEEL------- 506
D++++ +L+ P + Y S C++GTG +DE+L
Sbjct: 477 DLVVMGAYSGVGKRTGVYGGYLLG-CYNPTTEEYE----SVCKIGTGFTDEDLAEQYKIL 531
Query: 507 -DAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRS 565
D + K Y++ +++ + +F + D+ I SP +T D + I
Sbjct: 532 QDKKIDKSPSYYQ-FDHTLKPDDTFSPYLVFEVKCADITI-SPRHKAASGLTDDGKGI-- 587
Query: 566 EVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNG-TTQKGKEYGGLQDDKPKQ 624
SLRFPR R+R DK D + +E+ + QK ++ + +D +
Sbjct: 588 -------SLRFPRFLRIRDDKNSDDATSSEQVLEMYKNQEAFANQKIEKADAVDEDDEFE 640
Query: 625 FRSSRKGEKKNVSIVPSHFLQTDVSD-IKGET 655
+ + E ++ + V + IK ET
Sbjct: 641 EKEDEEEELNMTNVSEGSSKENPVKEEIKKET 672
Score = 47 (21.6 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 20/88 (22%), Positives = 38/88 (43%)
Query: 1038 DDEENLETRQTNVVEDLESLDRGKALQQEVVKDFGKE---KQTVRAPDIEMRERYHSKDS 1094
+DEE E TNV E + +++E+ K+ K K+ + P ++ S
Sbjct: 643 EDEEE-ELNMTNVSE---GSSKENPVKEEIKKETPKSVSPKKFEKKPPVKSSPVNKSPVK 698
Query: 1095 ETTDKQQVDAVQAMLLDMIPSLGMKNEK 1122
+ K++ + + + + S KNEK
Sbjct: 699 SSPIKKEAEKKKGPVASIFSSSTKKNEK 726
Score = 38 (18.4 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 201 LVCEKLKD--RNQRHKRQDIEV 220
+ CE D R Q HKR+D ++
Sbjct: 284 MTCEWKYDGERGQIHKREDGQI 305
>UNIPROTKB|K7ERZ5 [details] [associations]
symbol:LIG3 "DNA ligase 3" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF00645 Pfam:PF01068 Pfam:PF04675 PROSITE:PS00347
PROSITE:PS00697 PROSITE:PS50064 Gene3D:1.10.3260.10
SUPFAM:SSF117018 EMBL:AC004223 EMBL:AC022903 HGNC:HGNC:6600
Gene3D:3.30.1740.10 Ensembl:ENST00000585941 Uniprot:K7ERZ5
Length = 545
Score = 176 (67.0 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 48/159 (30%), Positives = 79/159 (49%)
Query: 124 LTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFH 183
LTI+E+++ L RL+ E+ L + + A ++K II +I DLK+ K +
Sbjct: 381 LTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLD 440
Query: 184 EFHPDAEDLFNVTCDLKLVCEKLKDRNQR-----HKRQDIEVGKA----VRPQLAMRIGD 234
P+A + F + +L+ V E++ Q +R+ + V + V+P LA
Sbjct: 441 ALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTPVQPMLAEACKS 500
Query: 235 AHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRS 273
A +K + E K+DG+R+Q+HKNG YFSRS
Sbjct: 501 VEYAMKKCPNG-MFSEIKYDGERVQVHKNGDHFSYFSRS 538
>UNIPROTKB|G4N7T1 [details] [associations]
symbol:MGG_06370 "DNA ligase" species:242507 "Magnaporthe
oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CM001234
KO:K10747 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 RefSeq:XP_003717204.1
EnsemblFungi:MGG_06370T0 GeneID:2684525 KEGG:mgr:MGG_06370
Uniprot:G4N7T1
Length = 896
Score = 167 (63.8 bits), Expect = 5.6e-09, Sum P(3) = 5.6e-09
Identities = 84/351 (23%), Positives = 141/351 (40%)
Query: 270 FSRSFLDHSE-YGHAMSKIIEQ-NVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAAR 327
FSR+ D S+ Y ++K+ +LD E + WD + F Q + + +
Sbjct: 560 FSRNSEDLSQKYPDILAKLDSWVKPETKSFVLDCETVAWDVQEKKVLPF--QQLMTRKKK 617
Query: 328 DGLSSDRQV-LCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNS 386
D D +V +C FAFD+LY+ +V+ +SL+ER LL+ KP +G E H +N
Sbjct: 618 DVKIEDVKVKVCVFAFDLLYLNGEAVVEKSLRERRTLLESSFKPIEG--EFAYATH-MNG 674
Query: 387 HVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEY 446
+ + +DE K E + + +L S +EP RS WLK+K +Y
Sbjct: 675 QELDE-------IQTFLDESVKASCEGLMVK----MLDGTESGYEPSKRSRNWLKIKKDY 723
Query: 447 IRA-GSDLDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRF---ISFCR-VGTGL 501
+ G LD++++ FL+A P+ D Y F V L
Sbjct: 724 LSGIGDSLDLVVLGAYYGKGKRTSVYGAFLLA-CYNPSSDKYETVCNIGTGFSEAVLEEL 782
Query: 502 SDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIR 561
+ D V+ + KP++ + P +++ + + SP D
Sbjct: 783 HTQLKDTVIDRPKPFYSHSSGGQHQPDVWFEPRFVWEVKTADLTLSPRYKAGCGEGVDPS 842
Query: 562 TIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQ-KG 611
+ SLRFPR ++R DK + + E+ ++ KG
Sbjct: 843 GTKG------ISLRFPRFIKLRDDKKPDEATSSRQVAEMYRKQESVSKNKG 887
Score = 54 (24.1 bits), Expect = 5.6e-09, Sum P(3) = 5.6e-09
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 131 DLLDRLASSE--NRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSI 181
D++ +L S+ N A K+ + K E K+I+ + L+LG++E+++
Sbjct: 376 DIIKKLLSAADVNNAGKVDISKD---KGGPSEAKFIVRFLEGKLRLGLAERTV 425
Score = 50 (22.7 bits), Expect = 5.6e-09, Sum P(3) = 5.6e-09
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 221 GKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIH 261
G ++P LA + + E K+DG+R QIH
Sbjct: 491 GIPLKPMLAKPTKAITEVLDRFENQTFTCEYKYDGERAQIH 531
>UNIPROTKB|P95096 [details] [associations]
symbol:lig "Probable DNA ligase" species:1773
"Mycobacterium tuberculosis" [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IDA]
[GO:0005618 "cell wall" evidence=IDA] [GO:0006266 "DNA ligation"
evidence=IDA] HAMAP:MF_00407 InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
InterPro:IPR022865 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005618 GO:GO:0051301 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0000287 GO:GO:0003677 GO:GO:0006260
GO:GO:0007049 GO:GO:0006310 EMBL:BX842581 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1793 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 HSSP:P18858 OMA:ARVQVHK HOGENOM:HOG000036008
PIR:G70649 RefSeq:NP_217578.1 RefSeq:NP_337667.1
RefSeq:YP_006516523.1 ProteinModelPortal:P95096 SMR:P95096
PRIDE:P95096 EnsemblBacteria:EBMYCT00000001759
EnsemblBacteria:EBMYCT00000071799 GeneID:13317866 GeneID:887553
GeneID:923636 KEGG:mtc:MT3148 KEGG:mtu:Rv3062 KEGG:mtv:RVBD_3062
PATRIC:18128680 TubercuList:Rv3062 KO:K01971 ProtClustDB:PRK03180
Uniprot:P95096
Length = 507
Score = 152 (58.6 bits), Expect = 6.1e-09, Sum P(3) = 6.1e-09
Identities = 49/170 (28%), Positives = 82/170 (48%)
Query: 218 IEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDH 277
+ VG+ + P LA H A + HG + E K DG R+QIH+ ++ ++RS LD
Sbjct: 178 LRVGRPIGPMLAQTATSVHDALER-HGGTTIFEAKLDGARVQIHRANDQVRIYTRS-LD- 234
Query: 278 SEYGHAMSKIIEQNVL--VDRCILDGEMLVW--DTSLNRF----AEFGSNQEIAKAARDG 329
+ + +++E + V + DGE + D RF + FG + ++A AAR
Sbjct: 235 -DVTARLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVA-AARA- 291
Query: 330 LSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLV 379
Q L F FD+L+ T ++ ER L +V P++ R++ L+
Sbjct: 292 ----TQPLSVFFFDILHRDGTDLLEAPTTERLAALDALV-PARHRVDRLI 336
Score = 66 (28.3 bits), Expect = 6.1e-09, Sum P(3) = 6.1e-09
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 398 LVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLI 457
L+ + + F T+ EG++ K +++ G R WLK+KP + DL VL
Sbjct: 335 LITSDPTDAANFLDATLAAGHEGVMAKAPAARYLAGRRGAGWLKVKPVHTL---DLVVLA 391
Query: 458 I 458
+
Sbjct: 392 V 392
Score = 43 (20.2 bits), Expect = 6.1e-09, Sum P(3) = 6.1e-09
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 564 RSEVFSAPYSLRFPRIDRVRYDK 586
RS + +LRF R+ R R DK
Sbjct: 470 RSSRYPGGLALRFARVVRYRADK 492
>UNIPROTKB|G4NHG0 [details] [associations]
symbol:MGG_03854 "DNA ligase" species:242507 "Magnaporthe
oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CM001236 KO:K10747
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 RefSeq:XP_003720037.1 ProteinModelPortal:G4NHG0
EnsemblFungi:MGG_03854T0 GeneID:2677295 KEGG:mgr:MGG_03854
Uniprot:G4NHG0
Length = 859
Score = 138 (53.6 bits), Expect = 8.1e-09, Sum P(3) = 8.1e-09
Identities = 43/150 (28%), Positives = 74/150 (49%)
Query: 224 VRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIH--KNGSEIHYFSRSF-LDHSEY 280
+RP L D KL G++ E K+DG R Q+H +NG ++ FSR L +Y
Sbjct: 424 LRPMLGSITRDLSEMLTKLQGRDFACEFKYDGQRAQVHCDENG-KVSIFSRHLELMTDKY 482
Query: 281 GHAMSKIIE-QNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDG--LSSDRQVL 337
++ I + + V IL+GE++ D++ F Q + AR + S +
Sbjct: 483 PDLVALIPKIRGEGVSSFILEGEVVAVDSTTGDLKNF---QTLTNRARKDVEIGSITVNV 539
Query: 338 CYFAFDVLYVGDTSVIHQSLKERHELLQKV 367
C FAFD++ + ++++ +ER ELL+ +
Sbjct: 540 CLFAFDLMLLNGQPLLNRPFRERRELLKSL 569
Score = 75 (31.5 bits), Expect = 8.1e-09, Sum P(3) = 8.1e-09
Identities = 45/169 (26%), Positives = 64/169 (37%)
Query: 424 KDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIXXXXXXXXXXXEVAQFLVALAERPA 483
K L + +EP R WLK+K +Y LD++ I + L+A+
Sbjct: 663 KPLLATYEPDKRLDSWLKVKKDYDSTFDTLDLIPIAAWHGQGRKAKWWSPILLAVRNEA- 721
Query: 484 PDTYPRRFISFCRVG-TGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPD 542
T ++ C G T +E A + + R P +F + S PD
Sbjct: 722 --TGSLEAVTKCMSGFTDAFYKENRAFYNDGEEDGERQNTRARRP-AFVEY---SGPEPD 775
Query: 543 VWIESPE--KSIILSIT-SDIRTIRSEVFSAP--YSLRFPRIDRVRYDK 586
VW E E + IT S T + S SLRFPR + R DK
Sbjct: 776 VWFEPQEVWEMAFADITLSPTYTAAIGLISDERGLSLRFPRFLKKREDK 824
Score = 57 (25.1 bits), Expect = 8.1e-09, Sum P(3) = 8.1e-09
Identities = 49/193 (25%), Positives = 84/193 (43%)
Query: 26 AKKRSKF--RKFLDTYCDSVDYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKD 83
AKK+ F RK V F +L I S + +GS +K+ ++ L DA G ++
Sbjct: 266 AKKKQNFTLRKPKPLTIKGV--FQSLVKIAQS--QGQGSVNVKQQIVDRLLQDARG-GEE 320
Query: 84 SADAVR-LINWRKGGAAPNAGNFPMVAAEVLQRRQGMISGGLTIKELNDLL-DRLASSEN 141
S VR L + GA + A +L + G KEL L + LA
Sbjct: 321 SRFIVRTLCQHLRIGAVKTTMLIALSRAFLLSKPYGADFETRDTKELARLKKEELAEVWA 380
Query: 142 RAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFH---EFH-PDAEDLFNVTC 197
R E++ V + ++ N ++ ++ L++GI+++ + H P L ++T
Sbjct: 381 RGEEL-VKACFARRPNYNDLVPVL------LEIGITDELLVRCGLAIHIPLRPMLGSITR 433
Query: 198 DLKLVCEKLKDRN 210
DL + KL+ R+
Sbjct: 434 DLSEMLTKLQGRD 446
Score = 54 (24.1 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 1097 TDKQQVDAVQAMLLDMIPSLGMKNEKTTNPI 1127
TD Q+ + + +LD +P + K + TT P+
Sbjct: 601 TD-QKCEGLMVKILDNLPDIAYKGDGTTEPV 630
>UNIPROTKB|H9L029 [details] [associations]
symbol:LIG1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS50160 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556
EMBL:AADN02065151 EMBL:AADN02065152 EMBL:AADN02065153
Ensembl:ENSGALT00000021833 Uniprot:H9L029
Length = 654
Score = 166 (63.5 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 62/212 (29%), Positives = 94/212 (44%)
Query: 397 SLVAHNVDEVEKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIRA-GSDL 453
S+ + DEV F + I+ EG+++K L + +E RS KWLKLK +Y+ G L
Sbjct: 438 SMDTRSADEVSDFLDKAIKASCEGLMVKTLEVEATYEIAKRSHKWLKLKKDYLDGLGDTL 497
Query: 454 DVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKL 513
D+++I FL+A + + + + S C++GTG ++E L+ L
Sbjct: 498 DLVVIGAYLGKGKRAGIYGGFLLACYDEESEE-----YQSICKIGTGFTEESLEKHYNFL 552
Query: 514 KPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITSDIRTIRSEVFS 569
K E+ P +Y+ N PD W+ + + K LSI+ R V
Sbjct: 553 K------EHVLTQPRPYYRWDN--AVAPDRWLAAVQVWEVKCGDLSISPVYRAAVGLVDE 604
Query: 570 AP-YSLRFPRIDRVRYDKPWHDCLDVQSFVEL 600
SLRFPR RVR DK + EL
Sbjct: 605 DKGISLRFPRFLRVRGDKKPEEATSSTQVAEL 636
Score = 165 (63.1 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 66/252 (26%), Positives = 109/252 (43%)
Query: 211 QRHKRQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIH--KNGSEIH 268
Q K I G ++P LA ++ E K+DG+R QIH ++G+
Sbjct: 267 QLPKHCGITPGVPLKPMLAQPARCVSELLKRFEEAAFTCEYKYDGERTQIHVLESGAVFI 326
Query: 269 YFSRSFLDHSEYGHAMSKIIEQ-NVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAAR 327
Y S+Y + +I + V CILD E + WD + F +
Sbjct: 327 YSRNQENTTSKYPDLVQRIPKMLKPGVRSCILDAEAVAWDKVTKQLQPFQVLMTRKRKDV 386
Query: 328 DGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSH 387
D + QV C +AFD+LY+ ++ + L R +LL++ + +G E L +
Sbjct: 387 DAAAIKVQV-CVYAFDLLYLNGEPLVREPLATRRQLLRQSFEEVEG--EFLF---ATSMD 440
Query: 388 VRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYI 447
R E V+ D ++K K + E + ++ + +E RS KWLKLK +Y+
Sbjct: 441 TRSADE-----VS---DFLDKAIKASCEGLM--VKTLEVEATYEIAKRSHKWLKLKKDYL 490
Query: 448 RA-GSDLDVLII 458
G LD+++I
Sbjct: 491 DGLGDTLDLVVI 502
>UNIPROTKB|H9L3I6 [details] [associations]
symbol:LIG1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0042542 "response to hydrogen peroxide"
evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS50160 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
OMA:AQVACLY GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556
EMBL:AADN02065151 EMBL:AADN02065152 EMBL:AADN02065153
Ensembl:ENSGALT00000040526 Uniprot:H9L3I6
Length = 661
Score = 166 (63.5 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 62/212 (29%), Positives = 94/212 (44%)
Query: 397 SLVAHNVDEVEKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIRA-GSDL 453
S+ + DEV F + I+ EG+++K L + +E RS KWLKLK +Y+ G L
Sbjct: 442 SMDTRSADEVSDFLDKAIKASCEGLMVKTLEVEATYEIAKRSHKWLKLKKDYLDGLGDTL 501
Query: 454 DVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKL 513
D+++I FL+A + + + + S C++GTG ++E L+ L
Sbjct: 502 DLVVIGAYLGKGKRAGIYGGFLLACYDEESEE-----YQSICKIGTGFTEESLEKHYNFL 556
Query: 514 KPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITSDIRTIRSEVFS 569
K E+ P +Y+ N PD W+ + + K LSI+ R V
Sbjct: 557 K------EHVLTQPRPYYRWDN--AVAPDRWLAAVQVWEVKCGDLSISPVYRAAVGLVDE 608
Query: 570 AP-YSLRFPRIDRVRYDKPWHDCLDVQSFVEL 600
SLRFPR RVR DK + EL
Sbjct: 609 DKGISLRFPRFLRVRGDKKPEEATSSTQVAEL 640
Score = 165 (63.1 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 66/252 (26%), Positives = 109/252 (43%)
Query: 211 QRHKRQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIH--KNGSEIH 268
Q K I G ++P LA ++ E K+DG+R QIH ++G+
Sbjct: 271 QLPKHCGITPGVPLKPMLAQPARCVSELLKRFEEAAFTCEYKYDGERTQIHVLESGAVFI 330
Query: 269 YFSRSFLDHSEYGHAMSKIIEQ-NVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAAR 327
Y S+Y + +I + V CILD E + WD + F +
Sbjct: 331 YSRNQENTTSKYPDLVQRIPKMLKPGVRSCILDAEAVAWDKVTKQLQPFQVLMTRKRKDV 390
Query: 328 DGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSH 387
D + QV C +AFD+LY+ ++ + L R +LL++ + +G E L +
Sbjct: 391 DAAAIKVQV-CVYAFDLLYLNGEPLVREPLATRRQLLRQSFEEVEG--EFLF---ATSMD 444
Query: 388 VRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYI 447
R E V+ D ++K K + E + ++ + +E RS KWLKLK +Y+
Sbjct: 445 TRSADE-----VS---DFLDKAIKASCEGLM--VKTLEVEATYEIAKRSHKWLKLKKDYL 494
Query: 448 RA-GSDLDVLII 458
G LD+++I
Sbjct: 495 DGLGDTLDLVVI 506
>UNIPROTKB|I3L9T2 [details] [associations]
symbol:I3L9T2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA] InterPro:IPR000977 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574
GeneTree:ENSGT00700000104500 EMBL:FP312781
Ensembl:ENSSSCT00000023206 OMA:FRISKEH Uniprot:I3L9T2
Length = 390
Score = 159 (61.0 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 54/206 (26%), Positives = 96/206 (46%)
Query: 403 VDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGS---DLDVLIIX 459
VD + + +E +E G+VLKD+ +EPG R WLK+K +Y+ G+ D++++
Sbjct: 38 VDMINRVIREGLE----GLVLKDVKGTYEPGKRH--WLKVKKDYLNEGAMADTADLVVLG 91
Query: 460 XXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRK 519
++ FL+ + P + +++ + + G D L + T+L +
Sbjct: 92 AFYGQGSKGGMMSIFLMGCYD---PSS--QKWCTVTKCAGGHDDATLARLQTELD-MVKI 145
Query: 520 YEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAP-YSLRFPR 578
+ P + P + ++ N PD + P+K+ + IT RSE +A S+RFPR
Sbjct: 146 SKDPSKIP-GWLKI--NKIYYPDFIVPDPKKAAVWEITG-AEFSRSEAHTADGISIRFPR 201
Query: 579 IDRVRYDKPWHDCLDVQSFVELVHSS 604
R+R DK W ++ EL S
Sbjct: 202 CTRIRDDKDWKSATNLPQLKELYQLS 227
>UNIPROTKB|G4MQC2 [details] [associations]
symbol:MGG_10627 "ATP-dependent DNA ligase
domain-containing protein" species:242507 "Magnaporthe oryzae
70-15" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR012308 InterPro:IPR012310 Pfam:PF01068 Pfam:PF04675
PROSITE:PS50160 GO:GO:0005524 GO:GO:0003677 GO:GO:0006281
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:CM001231 GO:GO:0003910 RefSeq:XP_003710720.1
ProteinModelPortal:G4MQC2 EnsemblFungi:MGG_10627T0 GeneID:2682230
KEGG:mgr:MGG_10627 Uniprot:G4MQC2
Length = 970
Score = 164 (62.8 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 122/572 (21%), Positives = 216/572 (37%)
Query: 79 GMSKDSADAVR-LINWRKGGAAPNAGNFPMVAAEVLQRRQGMISGGLTIKELNDLLDRLA 137
G KD A+ VR ++N PN P+V E + I+ + +A
Sbjct: 101 GSGKDFAECVRDVLN-----DTPNTCTAPLVTVEEVDEILHHIAARSRFSSPK-VQSSVA 154
Query: 138 SSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLK-LGISEKSIFHEFHPDAEDLFNVT 196
S E L L + + KW+ ++LKD + +S I P L +
Sbjct: 155 FSGRTDECHLRLQQLYNRLEPNQAKWLTRLVLKDYSPVDLSPSHILKGVDPLLPVLLKIY 214
Query: 197 CDLKLVCEKLKDRNQRH-KRQDIEVGKAV-------RPQLAMRIGDAHAAWRKL----H- 243
DL +++ R R D G + +P L +++G W K H
Sbjct: 215 DDLPTAISRMQQRGARGVTTYDDTTGTMIANLAARFKPILGVKVG--RQDWIKARSIKHC 272
Query: 244 ---GK-EVVIECKFDGDRIQIHKNGSE----IHYFSRSFLDHSEYGHAMSKIIEQNVLVD 295
G+ + IE K DG+ QIH + S+ I FS+S D + + I ++ +
Sbjct: 273 MQMGRGRMSIEKKMDGEYCQIHVDISKGPNCIQIFSKSGKDSTMDRVNLHPAIRTSLKIV 332
Query: 296 RCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQ 355
+G++L ++ + G+ + +R ++ Y+ D L + D S++
Sbjct: 333 YSEKEGKILPFEKIRKHVSRAGTYFHRSDDDSQAHPWERLMIVYY--DALMIDDESLLGV 390
Query: 356 SLKERHELLQKVVKPSKGR---LETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKE 412
ER + L+++V S G +E V D N H ++ F +
Sbjct: 391 RHSERFKRLKQLVSCSPGVAIIVERKVIDFDQNGHA--------------ASDLRHMFAQ 436
Query: 413 TIENRDEGIVLKDLGSKWEPGD-RSGKW---LKLKPEYIRAGSDL-DVLIIXXXXX-XXX 466
I + EG+VLK ++ GD R + +KLK EYI D+ D I+
Sbjct: 437 CITSHQEGLVLKADDPYFDFGDVRKSYYCCAIKLKKEYIGNFGDVGDFAIVGARYDPVKA 496
Query: 467 XXXEV-----AQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKP-YFRKY 520
+V F V R + V L++ +++ + P Y
Sbjct: 497 KDYDVPNLRWTHFYVGCLNTDKLQQMERPRFTVVNV-VELNNTQMEYFAKYVSPDYALAE 555
Query: 521 EYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTI---RSEVFSAPYSLRFP 577
E P AP ++ ++ +RP + PE + D+R R + Y++RFP
Sbjct: 556 EAPDSAPLLHFERGIDNGKRPSIIF--PEPPVF-----DLRCFSFTREANLAKHYTMRFP 608
Query: 578 RIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQ 609
+ ++ D+ W D + + E+ ++Q
Sbjct: 609 MVSKIHCDRTWRDAVSLDELQEMAKKELNSSQ 640
>UNIPROTKB|Q0JKB6 [details] [associations]
symbol:Os01g0685500 "Os01g0685500 protein" species:39947
"Oryza sativa Japonica Group" [GO:0003910 "DNA ligase (ATP)
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA]
InterPro:IPR012309 InterPro:IPR012310 Pfam:PF01068 Pfam:PF04679
PROSITE:PS50160 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AP008207 GO:GO:0006289 GO:GO:0006273 KO:K10747 GO:GO:0003910
RefSeq:NP_001043898.1 UniGene:Os.55232 ProteinModelPortal:Q0JKB6
GeneID:4324149 KEGG:osa:4324149 Gramene:Q0JKB6
ProtClustDB:CLSN2691710 Uniprot:Q0JKB6
Length = 318
Score = 141 (54.7 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 59/249 (23%), Positives = 106/249 (42%)
Query: 351 SVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFF 410
S+++ SL++R + + + + G E L + + + + ++ + FF
Sbjct: 64 SLLNCSLRQRRKYIHDLFQEKPGHFE-------LAQQLTVEADEASVDNSTTLERMNTFF 116
Query: 411 KETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIXXXXXXXXXX 468
K ++ EGI+LK D+ + + R WLK+K +Y+ G LD++ I
Sbjct: 117 KMACQSSCEGIMLKILDVDAGYSASKRCDSWLKVKRDYVGLGDSLDLVPIGAWYGNGRKA 176
Query: 469 XEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEY-PKRAP 527
+ FL+A P+ Y F S CRV +G SDE ++K ++ PK+
Sbjct: 177 GWYSPFLMACYN---PE-Y-EEFQSVCRVMSGFSDE----FYKEMKEFYSGDRILPKK-- 225
Query: 528 PSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVF-----SAPYSLRFPRIDRV 582
P +Y+ + E P++W + + I + + S S+R PR R
Sbjct: 226 PVYYK----TDELPELWFSAEQVWEIRGADLTLSPVHHAAIGLVHPSRGISVRMPRYIRS 281
Query: 583 RYDKPWHDC 591
R D+ DC
Sbjct: 282 RPDRSPEDC 290
>UNIPROTKB|A8J921 [details] [associations]
symbol:CHLREDRAFT_176829 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA]
[GO:0006273 "lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS50160 GO:GO:0005524 GO:GO:0005634
GO:GO:0005694 GO:GO:0003677 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289 eggNOG:COG1236
KO:K15340 InterPro:IPR011084 Pfam:PF07522 GO:GO:0006273
GO:GO:0003910 Gene3D:1.10.3260.10 SUPFAM:SSF117018 EMBL:DS496145
RefSeq:XP_001698007.1 ProteinModelPortal:A8J921
EnsemblPlants:EDO99592 GeneID:5723644 KEGG:cre:CHLREDRAFT_176829
Uniprot:A8J921
Length = 1384
Score = 111 (44.1 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 58/213 (27%), Positives = 85/213 (39%)
Query: 419 EGIVLKDL--GSKWEPGDRSGKWLK-------LKPEYIRAGSD-LDVLIIXXXXXXXXXX 468
EG++LK L S +EP RS W+K +K +Y D +DV+ I
Sbjct: 1098 EGLMLKRLDGASAYEPSRRSEAWIKASSECVCVKRDYCEGLRDSVDVVPIGAWYGQGRKV 1157
Query: 469 XEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPP 528
+ FL+A+ + P + F S CR +G SD+ A +L P P
Sbjct: 1158 KWFSPFLLAVWD-PVRE----EFQSLCRCMSGFSDQFYAAAKERLGATI----IP--GPK 1206
Query: 529 SFYQVTNNSKERPDVWIESPE----KSIILSITSDIRTIRSEVFSAP-YSLRFPRIDRVR 583
+Y N+ ER VW E E + L+++ R + + +RFPR RVR
Sbjct: 1207 PYY----NTGERCSVWFEPTEVWELRGADLTLSPVHRAASGRLHTERGVGMRFPRFIRVR 1262
Query: 584 YDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGG 616
DK D V L + G+ GG
Sbjct: 1263 DDKRPEDATTPDDIVHLYNKQTRKVVVGERGGG 1295
Score = 72 (30.4 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 337 LCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKP-SKGRL 375
+C F FD+L TS++H+ L+ER LL + S GR+
Sbjct: 931 VCVFVFDLLEWNGTSLLHRPLRERRSLLPAALPGMSPGRV 970
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1160 1063 0.00084 123 3 11 22 0.42 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 88
No. of states in DFA: 633 (67 KB)
Total size of DFA: 521 KB (2239 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 90.39u 0.46s 90.85t Elapsed: 00:00:04
Total cpu time: 90.43u 0.46s 90.89t Elapsed: 00:00:04
Start: Fri May 10 05:13:24 2013 End: Fri May 10 05:13:28 2013