Query 001082
Match_columns 1160
No_of_seqs 411 out of 2324
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 10:07:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l2p_A DNA ligase 3; DNA ligas 100.0 2E-99 7E-104 919.1 56.3 553 4-604 4-578 (579)
2 2hiv_A Thermostable DNA ligase 100.0 3.7E-94 1.3E-98 882.3 53.9 551 3-605 17-608 (621)
3 3gde_A DNA ligase; DNA-binding 100.0 1.4E-93 4.9E-98 865.5 51.6 529 7-604 4-552 (558)
4 2cfm_A Thermostable DNA ligase 100.0 6.6E-93 2.3E-97 863.8 50.6 533 7-604 1-552 (561)
5 1x9n_A DNA ligase I; 5'-adenyl 100.0 7.4E-93 2.5E-97 876.6 45.8 555 4-605 53-670 (688)
6 1vs0_A Putative DNA ligase-lik 100.0 6E-59 2.1E-63 527.9 25.1 307 218-593 3-309 (310)
7 1a0i_A DNA ligase; DNA replica 100.0 1.4E-49 4.9E-54 458.8 23.3 305 216-583 3-348 (348)
8 1fvi_A Chlorella virus DNA lig 100.0 1.1E-44 3.8E-49 408.4 23.1 265 223-588 2-297 (297)
9 3ii6_X DNA ligase 4; XRCC4, NH 100.0 7.2E-42 2.5E-46 379.4 21.5 248 653-911 6-263 (263)
10 4htp_A DNA ligase 4; helical d 100.0 4.1E-41 1.4E-45 367.0 21.1 215 1-216 8-238 (240)
11 1z56_C DNA ligase IV; DNA repa 100.0 1.4E-35 4.9E-40 329.6 7.6 246 654-912 2-262 (264)
12 1p16_A GTP--RNA, mRNA capping 100.0 1.1E-32 3.9E-37 322.2 18.9 313 194-604 20-364 (395)
13 1ckm_A MRNA capping enzyme; nu 100.0 2.3E-28 7.9E-33 278.8 19.6 232 242-602 72-312 (330)
14 3vnn_A DNA ligase 4; non-homol 99.9 9.5E-26 3.3E-30 226.1 9.0 127 247-377 1-135 (139)
15 3olc_X DNA topoisomerase 2-bin 99.8 6.1E-21 2.1E-25 214.9 14.9 183 655-915 103-288 (298)
16 3kyh_C MRNA-capping enzyme sub 99.8 2E-21 6.8E-26 226.8 9.6 186 240-458 60-263 (461)
17 3rtx_A MRNA-capping enzyme; gu 99.8 2.8E-21 9.7E-26 220.2 8.5 176 243-457 61-247 (343)
18 1kzy_C Tumor suppressor P53-bi 99.8 4.6E-19 1.6E-23 195.9 14.2 196 651-910 9-250 (259)
19 1l0b_A BRCA1; TANDEM-BRCT, thr 99.8 1.4E-18 4.6E-23 188.7 16.9 198 656-914 3-215 (229)
20 1t15_A Breast cancer type 1 su 99.7 1.6E-17 5.5E-22 178.1 16.0 197 659-913 3-212 (214)
21 2vxb_A DNA repair protein RHP9 99.7 2.4E-17 8.2E-22 180.2 16.2 204 656-905 1-240 (241)
22 3u3z_A Microcephalin; DNA repa 99.7 1.9E-17 6.5E-22 176.0 13.6 181 663-912 14-198 (199)
23 2nte_A BARD-1, BRCA1-associate 99.7 8.8E-17 3E-21 172.3 15.8 181 660-908 2-210 (210)
24 2etx_A Mediator of DNA damage 99.7 1.1E-16 3.8E-21 171.5 13.9 194 656-916 8-206 (209)
25 2ebw_A DNA repair protein REV1 99.5 2.3E-14 7.8E-19 134.5 8.9 88 653-742 8-96 (97)
26 3al2_A DNA topoisomerase 2-bin 99.5 1.4E-13 4.8E-18 149.8 12.4 210 659-913 8-230 (235)
27 3sqd_A PAX-interacting protein 99.5 2.4E-13 8.3E-18 146.4 13.9 191 657-911 13-218 (219)
28 1wf6_A Similar to S.pombe -RAD 99.4 1.6E-13 5.5E-18 136.2 9.8 93 798-913 35-128 (132)
29 4id3_A DNA repair protein REV1 99.4 4.2E-13 1.4E-17 124.3 8.2 84 654-740 4-90 (92)
30 2vug_A PAB1020; RNA, ligase, A 99.4 7.1E-12 2.4E-16 145.2 17.0 156 244-446 94-253 (389)
31 3l46_A Protein ECT2; alternati 99.3 1.7E-12 5.7E-17 124.6 9.0 91 800-915 18-109 (112)
32 2d8m_A DNA-repair protein XRCC 99.3 1.4E-12 4.6E-17 129.1 8.1 91 654-746 19-110 (129)
33 2cou_A ECT2 protein; BRCT doma 99.3 2.3E-12 7.9E-17 123.6 8.7 90 800-914 9-99 (109)
34 3pc6_A DNA repair protein XRCC 99.3 4.2E-12 1.4E-16 120.1 9.6 93 801-915 5-98 (104)
35 3l3e_A DNA topoisomerase 2-bin 99.3 2E-12 6.8E-17 123.6 6.8 89 652-741 10-102 (107)
36 4id3_A DNA repair protein REV1 99.3 7.2E-12 2.5E-16 116.0 9.2 86 800-912 4-92 (92)
37 3l46_A Protein ECT2; alternati 99.3 2.2E-12 7.4E-17 123.9 5.2 84 655-739 19-103 (112)
38 2ep8_A Pescadillo homolog 1; A 99.3 5.9E-12 2E-16 118.5 7.6 81 653-739 8-99 (100)
39 3pa6_A Microcephalin; BRCT dom 99.3 8.3E-12 2.8E-16 119.0 8.4 95 800-915 4-99 (107)
40 3pc6_A DNA repair protein XRCC 99.3 9.9E-12 3.4E-16 117.6 8.6 87 655-741 5-94 (104)
41 2cou_A ECT2 protein; BRCT doma 99.2 2.6E-12 8.9E-17 123.2 3.9 88 654-742 9-97 (109)
42 2coe_A Deoxynucleotidyltransfe 99.2 2.5E-11 8.5E-16 117.3 10.1 96 799-910 16-112 (120)
43 3qwu_A DNA ligase; structural 99.2 6.1E-11 2.1E-15 134.5 14.7 150 239-427 67-222 (370)
44 3l41_A BRCT-containing protein 99.2 5.4E-11 1.8E-15 128.0 10.6 193 660-909 8-212 (220)
45 2ebw_A DNA repair protein REV1 99.2 3.7E-11 1.3E-15 112.5 7.5 85 800-911 9-95 (97)
46 2jw5_A DNA polymerase lambda; 99.2 1E-11 3.4E-16 118.4 3.5 98 799-913 7-105 (106)
47 1wf6_A Similar to S.pombe -RAD 99.2 1E-10 3.4E-15 116.1 10.5 98 643-742 26-127 (132)
48 2d8m_A DNA-repair protein XRCC 99.1 1.5E-10 5E-15 114.5 10.1 90 802-916 21-111 (129)
49 3l3e_A DNA topoisomerase 2-bin 99.1 1.2E-10 4.1E-15 111.2 8.1 93 800-914 12-105 (107)
50 3olc_X DNA topoisomerase 2-bin 99.1 2E-10 6.7E-15 129.4 10.5 148 679-909 28-187 (298)
51 2ep8_A Pescadillo homolog 1; A 99.0 1.3E-09 4.4E-14 102.6 9.5 80 800-910 9-100 (100)
52 3pa6_A Microcephalin; BRCT dom 98.9 1.6E-09 5.6E-14 103.2 8.3 85 656-740 6-94 (107)
53 3pc7_A DNA ligase 3; DNA repai 98.9 1.4E-09 4.7E-14 99.3 5.8 73 800-906 13-87 (88)
54 2dun_A POL MU, DNA polymerase 98.8 6.4E-09 2.2E-13 101.0 7.3 97 801-911 8-106 (133)
55 3pc7_A DNA ligase 3; DNA repai 98.8 3.1E-09 1.1E-13 96.9 3.9 73 654-736 13-87 (88)
56 3ef0_A RNA polymerase II subun 98.8 1.1E-08 3.8E-13 118.1 9.1 86 655-740 280-370 (372)
57 3ef1_A RNA polymerase II subun 98.7 1E-08 3.4E-13 119.9 7.2 87 654-740 349-440 (442)
58 3ef0_A RNA polymerase II subun 98.6 4E-08 1.4E-12 113.4 7.8 90 802-911 281-371 (372)
59 3u3z_A Microcephalin; DNA repa 98.6 1.8E-08 6E-13 106.9 4.4 79 654-739 116-195 (199)
60 2jw5_A DNA polymerase lambda; 98.5 2.6E-08 8.7E-13 94.9 3.3 89 653-741 7-103 (106)
61 3ef1_A RNA polymerase II subun 98.5 7.6E-08 2.6E-12 112.5 7.1 90 802-911 351-441 (442)
62 1t15_A Breast cancer type 1 su 98.5 1.2E-07 4.3E-12 101.0 7.8 87 654-740 112-209 (214)
63 2nte_A BARD-1, BRCA1-associate 98.4 2E-07 6.9E-12 99.4 7.3 82 655-737 102-209 (210)
64 3sqd_A PAX-interacting protein 98.4 2.9E-07 9.9E-12 99.0 7.6 90 801-914 11-100 (219)
65 2coe_A Deoxynucleotidyltransfe 98.4 4.5E-07 1.5E-11 87.6 7.9 92 654-745 17-117 (120)
66 1l0b_A BRCA1; TANDEM-BRCT, thr 98.4 3.7E-07 1.3E-11 98.5 7.8 87 656-743 116-213 (229)
67 1l7b_A DNA ligase; BRCT, autos 98.4 4.9E-07 1.7E-11 83.6 7.0 76 654-730 4-80 (92)
68 2etx_A Mediator of DNA damage 98.3 5.5E-07 1.9E-11 96.1 7.2 85 802-913 8-92 (209)
69 2k6g_A Replication factor C su 98.2 2.4E-06 8.1E-11 81.5 8.2 77 655-731 30-108 (109)
70 3ii6_X DNA ligase 4; XRCC4, NH 98.2 2.4E-06 8.1E-11 94.4 9.1 88 800-912 7-96 (263)
71 1z56_C DNA ligase IV; DNA repa 98.1 8E-07 2.7E-11 98.2 3.6 87 653-740 156-260 (264)
72 2ebu_A Replication factor C su 98.1 4.3E-06 1.5E-10 80.0 8.0 77 655-731 20-98 (112)
73 1kzy_C Tumor suppressor P53-bi 98.1 2.3E-06 7.8E-11 94.4 6.9 101 800-913 12-137 (259)
74 2dun_A POL MU, DNA polymerase 98.1 1.9E-06 6.3E-11 83.9 5.2 92 654-745 7-110 (133)
75 2cok_A Poly [ADP-ribose] polym 98.1 4.4E-06 1.5E-10 80.1 7.2 83 655-738 8-104 (113)
76 3al2_A DNA topoisomerase 2-bin 98.0 9.2E-06 3.1E-10 88.2 8.7 87 804-914 7-96 (235)
77 2vxb_A DNA repair protein RHP9 98.0 7E-06 2.4E-10 89.5 7.6 91 802-913 1-118 (241)
78 3l41_A BRCT-containing protein 98.0 6.5E-06 2.2E-10 88.5 6.7 83 805-914 7-89 (220)
79 1ik9_C DNA ligase IV; DNA END 97.9 4.2E-06 1.4E-10 63.6 2.7 34 747-780 2-35 (37)
80 2hvq_A ORF1, hypothetical 37.6 97.6 0.00013 4.4E-09 83.1 10.5 107 241-367 25-146 (335)
81 1s68_A RNA ligase 2; ribonucle 97.6 0.0003 1E-08 77.0 12.4 107 241-367 24-145 (249)
82 1ta8_A DNA ligase, NAD-depende 97.5 7.3E-05 2.5E-09 84.4 6.4 173 246-445 114-319 (332)
83 2l42_A DNA-binding protein RAP 97.5 5E-05 1.7E-09 69.2 3.9 80 654-740 8-93 (106)
84 2l42_A DNA-binding protein RAP 97.3 0.00011 3.8E-09 67.0 3.7 87 801-915 9-98 (106)
85 1b04_A Protein (DNA ligase); D 97.3 0.00018 6.2E-09 80.8 5.8 173 245-444 107-312 (318)
86 3t7k_A RTT107, regulator of TY 97.2 0.0026 8.9E-08 68.2 13.4 174 666-902 27-240 (256)
87 4glw_A DNA ligase; inhibitor, 97.1 0.0015 5.2E-08 73.2 10.7 156 243-427 100-281 (305)
88 4glx_A DNA ligase; inhibitor, 96.9 0.0021 7.2E-08 77.9 10.6 225 245-509 108-367 (586)
89 1l7b_A DNA ligase; BRCT, autos 96.7 0.0024 8.2E-08 58.9 6.8 76 800-900 4-80 (92)
90 1zau_A DNA ligase; AMP; HET: D 96.6 0.00013 4.5E-09 82.3 -3.0 168 245-439 116-319 (328)
91 3uq8_A DNA ligase; adenylated 96.6 0.0042 1.4E-07 69.8 8.5 158 246-429 108-294 (322)
92 1xk5_A Snurportin-1; protein-R 96.5 0.0083 2.8E-07 62.9 9.7 179 225-447 5-186 (204)
93 3jsl_A DNA ligase; NAD+-depend 96.4 0.0047 1.6E-07 69.3 7.3 175 244-445 104-311 (318)
94 2k6g_A Replication factor C su 96.3 0.011 3.8E-07 56.2 8.4 78 801-901 30-108 (109)
95 2c5u_A RNA ligase, T4 RNA liga 96.3 0.024 8.1E-07 65.4 12.7 142 245-446 93-246 (375)
96 1xdn_A RNA editing ligase MP52 96.2 0.024 8.2E-07 61.7 11.5 120 243-367 31-190 (277)
97 2ebu_A Replication factor C su 96.0 0.019 6.4E-07 54.8 8.4 78 801-901 20-98 (112)
98 2owo_A DNA ligase; protein-DNA 95.6 0.018 6.1E-07 70.9 8.1 193 246-472 109-338 (671)
99 1dgs_A DNA ligase; AMP complex 95.6 0.0021 7.2E-08 78.9 0.0 79 655-734 585-664 (667)
100 3gjx_B Snurportin-1; transport 95.5 0.03 1E-06 62.7 9.0 179 225-447 106-287 (365)
101 2cok_A Poly [ADP-ribose] polym 95.5 0.038 1.3E-06 52.8 8.5 85 802-908 9-104 (113)
102 3sgi_A DNA ligase; HET: DNA AM 95.5 0.0067 2.3E-07 73.7 3.8 195 246-474 117-350 (615)
103 4e6n_A Metallophosphoesterase; 95.4 0.082 2.8E-06 59.4 12.0 180 235-430 68-337 (427)
104 2owo_A DNA ligase; protein-DNA 95.1 0.0038 1.3E-07 76.8 0.0 75 655-729 595-670 (671)
105 1dgs_A DNA ligase; AMP complex 94.8 0.043 1.5E-06 67.5 8.2 192 246-472 110-336 (667)
106 2hiv_A Thermostable DNA ligase 92.6 0.1 3.6E-06 64.1 5.9 87 122-208 19-120 (621)
107 3huf_A DNA repair and telomere 88.9 0.24 8.4E-06 55.0 4.0 68 658-729 113-186 (325)
108 4gns_A Chitin biosynthesis pro 87.7 0.79 2.7E-05 45.8 6.3 85 658-742 162-254 (290)
109 3gde_A DNA ligase; DNA-binding 86.0 0.86 2.9E-05 55.2 6.8 85 124-208 4-103 (558)
110 2cfm_A Thermostable DNA ligase 85.7 0.65 2.2E-05 56.4 5.5 85 125-209 2-100 (561)
111 4gns_A Chitin biosynthesis pro 85.4 1.4 4.8E-05 44.0 6.7 95 803-915 161-257 (290)
112 1x9n_A DNA ligase I; 5'-adenyl 81.7 1.2 4E-05 55.4 5.5 87 121-207 53-156 (688)
113 3qbz_A DDK kinase regulatory s 81.1 2.1 7.3E-05 42.7 6.0 60 801-860 56-118 (160)
114 3t7k_A RTT107, regulator of TY 79.6 2.1 7.3E-05 46.0 5.8 69 834-915 40-122 (256)
115 3oq0_A DBF4, protein DNA52; DD 76.5 5.3 0.00018 39.6 7.1 92 800-900 17-114 (151)
116 3oq4_A DBF4, protein DNA52; DD 72.8 8.1 0.00028 37.6 7.2 87 805-900 6-97 (134)
117 3huf_A DNA repair and telomere 71.5 5.4 0.00018 44.4 6.5 58 831-899 127-186 (325)
118 4htp_A DNA ligase 4; helical d 59.2 10 0.00036 40.6 5.7 87 122-208 12-134 (240)
119 3l2p_A DNA ligase 3; DNA ligas 41.5 56 0.0019 39.6 8.8 87 5-114 116-202 (579)
120 3qbz_A DDK kinase regulatory s 33.9 33 0.0011 34.2 4.2 49 656-704 57-117 (160)
121 2k2w_A Recombination and DNA r 25.3 68 0.0023 30.5 4.5 34 655-691 11-44 (118)
122 2ezd_A High mobility group pro 24.2 31 0.0011 23.6 1.3 16 970-985 4-19 (26)
No 1
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=100.00 E-value=2e-99 Score=919.06 Aligned_cols=553 Identities=25% Similarity=0.416 Sum_probs=450.2
Q ss_pred CCCCcHHHHHHHHHHHHhhCChHHHHHHHHHHHhhcCCC----chHhhhHhhcCCCCCcCcccCCCCHHHHHHHHHHHhC
Q 001082 4 TEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDS----VDYFSALRLILPSLDRERGSYGLKESVLANCLIDALG 79 (1160)
Q Consensus 4 ~~~~~F~~l~~lle~i~~~~~~~~K~~~l~~~l~~~~~~----~~~~p~lrLllp~~d~er~~ygike~~L~k~~~~~lg 79 (1160)
.++|+|++||++|++|++++++++|+.+|++||.++..+ .++||++|+|+|..+ +++|||++++|+|+|++++|
T Consensus 4 ~~d~~F~~f~~l~~~ie~~s~r~~k~~il~~~~~~~~~~~~~~~~~y~~~~~l~P~~~--~~~~gi~ek~l~k~~~~~~g 81 (579)
T 3l2p_A 4 HKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFHGDVYLTVKLLLPGVI--KTVYNLNDKQIVKLFSRIFN 81 (579)
T ss_dssp SGGGBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCC-------CCHHHHHHHHCTTTS--CCCCSCCHHHHHHHHHHHHT
T ss_pred cccCcHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCCcccccchHHHHHHHhCCCcc--CcccCCcHHHHHHHHHHHHC
Confidence 457999999999999999999999999999999998543 589999999999997 46999999999999999999
Q ss_pred CCcChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhhc--CC-CCCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Q 001082 80 MSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQ--GM-ISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKT 156 (1160)
Q Consensus 80 l~~~s~~~~~L~~wk~~~~~~~~GD~~~~a~~vl~~r~--~~-~~~~LTI~eVn~~Ld~LA~~~~~~~k~~iL~~ll~~~ 156 (1160)
++.+. ..++ | ..||||.+|..++..+. .. .+++|||.+||+.|++||..+|...+..+|..|+.+|
T Consensus 82 ~~~~~--~~~~--~-------~~GD~~~~~~~~~~~~~~~~~~~~~~LTv~~V~~~L~~ia~~~g~~sq~~~l~~l~~~~ 150 (579)
T 3l2p_A 82 CNPDD--MARD--L-------EQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRC 150 (579)
T ss_dssp SCHHH--HHHH--G-------GGSCHHHHHHHHHHSCSSSCCCSSCCCBHHHHHHHHHHHHTCCSHHHHHHHHHHHHTTC
T ss_pred cCHHH--HHHH--H-------HcCCHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHhccCcHHHHHHHHHHHHhC
Confidence 98753 3333 3 35999999888765432 22 3579999999999999999999888889999999999
Q ss_pred CHHHHHHHHHHHhhhhccCCcccccccccCccHHHHHhhhCCHHHHHHHHhhhhc---------cccccccccCCccccc
Q 001082 157 NAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQ---------RHKRQDIEVGKAVRPQ 227 (1160)
Q Consensus 157 s~~E~k~l~RiIlkdLriGi~e~til~~~hpda~~~~~~~~DL~~V~~~L~~~~~---------~~~~~~i~~g~p~~Pm 227 (1160)
|+.|+|||+|||+++||||+++++|+.+|||+|.++|++++||+.||+.+.+... .+....+.+|.||+||
T Consensus 151 ~~~E~k~l~R~i~~~lriG~~e~~vl~a~~~~a~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~PM 230 (579)
T 3l2p_A 151 TANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTPVQPM 230 (579)
T ss_dssp CSHHHHHHHHHHTTCCSSSCCHHHHHHTTCTTHHHHHHHSCCHHHHHHHHHHHHHSCC--------CCCCCCTTSCCCCC
T ss_pred CHHHHHHHHHHHHhhhhcccchhHHHHHhCHHHHHHHhhcCCHHHHHHHHHhhchhhhcccccccccccccCCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999988754211 1223567889999999
Q ss_pred cccccCChHHHHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEeCCCCCCCc-chhhHHHHHHHhc-ccCceeeeeeEEE
Q 001082 228 LAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGHAMSKIIEQNV-LVDRCILDGEMLV 305 (1160)
Q Consensus 228 LA~~~~~~~~~~~~~~~~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~t~-~~p~l~~~l~~~~-~~~~~ILDGElv~ 305 (1160)
||+++.+++++++++. ..|++|+||||+|+|+|++|+++++|||||++++. ..+.+.+.+...+ ...+||||||||+
T Consensus 231 LA~~~~~~~~~~~~~~-~~~~~E~K~DG~R~qih~~g~~v~l~SR~g~~~~p~~~~~l~~~l~~~~~~~~~~iLDGElv~ 309 (579)
T 3l2p_A 231 LAEACKSVEYAMKKCP-NGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDYIPQAFPGGHSMILDSEVLL 309 (579)
T ss_dssp EEEECCCHHHHHHHCT-TCEEEEECCCSEEEEEEEETTEEEEECTTSCBCCGGGTTTGGGTHHHHSTTCSEEEEEEEEEE
T ss_pred cCCcCCCHHHHHhhCC-CCeEEEEccCcEEEEEEEECCEEEEECCCCCccChhHHHHHHHHHHHhcCcCCceEEEeEEEE
Confidence 9999999988888875 46999999999999999999999999999999842 1222333332233 2468999999999
Q ss_pred EeCCCCcccccccHHHHHHHhccCCCCCCccEEEEEEeeeeeCCcccccCCHHHHHHHHHHhhcCCCCcceeeccCCCCC
Q 001082 306 WDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLN 385 (1160)
Q Consensus 306 ~d~~~~~~~pF~~lq~i~~~~r~~~~~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~~~ 385 (1160)
||+.+++++||+.++...+.. . .+ .+++|++|||||+||++|++.||.+||++|++++.+.++++.+.
T Consensus 310 ~d~~~g~~~~F~~L~~~~~~~---~-~~-~~v~~~vFDlL~l~G~~L~~~Pl~eRr~~L~~~~~~~~~~i~~~------- 377 (579)
T 3l2p_A 310 IDNKTGKPLPFGTLGVHKKAA---F-QD-ANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFS------- 377 (579)
T ss_dssp BCTTTCCBCCGGGGSHHHHHH---C-SS-CCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHCCCBTTTEEEC-------
T ss_pred EeCCCCcccCHHHHHHHhhhh---c-cc-CCeEEEEEEeeccCCCccccCCHHHHHHHHHHHhhcCCCeEEEe-------
Confidence 998778889999887533221 1 12 34999999999999999999999999999999998877665432
Q ss_pred ccccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEccccccC---CCcccEEEEEEEe
Q 001082 386 SHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA---GSDLDVLIIGGYY 462 (1160)
Q Consensus 386 ~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKlKpey~~~---g~~lDlvVIG~~~ 462 (1160)
....+.+.+++.++|+++++.|+||||+|+++|+|.||+| +|+|+|++|+++ ++++|+||||+++
T Consensus 378 ----------~~~~~~~~~~~~~~~~~a~~~g~EGlv~K~~ds~Y~~Grr--~WlK~K~~y~~~g~~~~t~D~vViG~~~ 445 (579)
T 3l2p_A 378 ----------EMKRVTKALDLADMITRVIQEGLEGLVLKDVKGTYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFY 445 (579)
T ss_dssp ----------CEEEECSHHHHHHHHHHHHHTTCCCEEEEESSCCCCTTCE--EEEEECTTTCC---CCEEEEEEEEEEEC
T ss_pred ----------eeEEcCCHHHHHHHHHHHHHhCCCceEEecCcCCCCCCCe--eeEEEechhhccccccccccEEEEEEEe
Confidence 1234567899999999999999999999999999999988 899999999874 5799999999999
Q ss_pred cCCCCCCccceEEEEEecCCCCCCCCceEEEEeeecCCCCHHHHHHHHHhhcccccccCCCCCCCCCcccccCCCCCCCc
Q 001082 463 GSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPD 542 (1160)
Q Consensus 463 G~Grr~g~~gsfllg~~d~~~~~~~~~~f~sv~kVgtG~sdeel~~l~~~l~~~~~~~~~~~~~pP~~~~~~~~~~~~Pd 542 (1160)
|+|+++|.+|+|+||++|+++ +.|+++|+||||||++++++|.+.|++++... +...+|.|+.+. ....||
T Consensus 446 G~Gkr~g~~g~lllg~~d~~~-----~~l~~vgkvgtGftd~~l~~l~~~l~~~~~~~--~~~~~~~~~~~~--~~~~pd 516 (579)
T 3l2p_A 446 GQGSKGGMMSIFLMGCYDPGS-----QKWCTVTKCAGGHDDATLARLQNELDMVKISK--DPSKIPSWLKVN--KIYYPD 516 (579)
T ss_dssp CCTTSCSSCCEEEEEEECTTT-----SSEEEEEEECTTCCHHHHHHTTTSSCCCCCCC----------------------
T ss_pred CCCCCCCceeEEEEEEEeCCC-----CeEEEecCccCCCCHHHHHHHHHHhhcccccc--CCccCCceeecC--CCCCCc
Confidence 999999999999999998654 37999999999999999999999999987642 112246676543 356899
Q ss_pred EEEeCCcceEEEEEEeeeeeeeccccc-CCceeecceeeeeecCCCccCcCCHHHHHHHHHcc
Q 001082 543 VWIESPEKSIILSITSDIRTIRSEVFS-APYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSS 604 (1160)
Q Consensus 543 vwi~~P~~s~Vlev~~~i~~~~s~~~~-~g~tLRFPR~~riR~DK~~~d~~t~~el~el~~~~ 604 (1160)
+|+..|..++||||+++.. ..|+.|+ .|+|||||||.|||+||+|+||+|++++.+||+.+
T Consensus 517 ~~~~~P~~~~V~Ei~~~~i-~~S~~~~~~G~sLRFPR~~riR~DK~~~ea~t~~~l~~l~~~~ 578 (579)
T 3l2p_A 517 FIVPDPKKAAVWEITGAEF-SKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLS 578 (579)
T ss_dssp --------CEEEEEEESCE-EECTTSSSTTEEESSCEECCCCSSCCSSSSCBHHHHHHHHHTC
T ss_pred EEEecCCCCeEEEEEeeEE-eecCCcccCCEEEECCeEEEEeCCCChHHCCCHHHHHHHHhhc
Confidence 9985588889999997644 3677775 79999999999999999999999999999999754
No 2
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=100.00 E-value=3.7e-94 Score=882.29 Aligned_cols=551 Identities=26% Similarity=0.466 Sum_probs=471.6
Q ss_pred CCCCCcHHHHHHHHHHHHhhCChHHHHHHHHHHHhhcCCCchHhhhHhhc----CCCCCcCcccCCCCHHHHHHHHHHHh
Q 001082 3 KTEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLI----LPSLDRERGSYGLKESVLANCLIDAL 78 (1160)
Q Consensus 3 ~~~~~~F~~l~~lle~i~~~~~~~~K~~~l~~~l~~~~~~~~~~p~lrLl----lp~~d~er~~ygike~~L~k~~~~~l 78 (1160)
...+|+|+.||++|++|+.++++++|+++|.+||+.+ .+++++|+++|+ +|..+. |++|||+++.|++++++++
T Consensus 17 ~~~~~~f~~~~~~~~~l~~t~~r~~k~~~l~~~~~~~-~~~d~~~~~~ll~~~l~P~~~~-~~~~gi~~~~L~k~~~~~~ 94 (621)
T 2hiv_A 17 RGSHMEFKVIAEYFDKLEKISSRLQLTALLADLLSKS-DKTIIDKVVYIIQGKLWPDFLG-YPELGIGEKFLIKAISIAT 94 (621)
T ss_dssp ----CBTHHHHHHHHHHHHCCCHHHHHHHHHHHHHTS-CGGGHHHHHHHTTTCSSCGGGC-CCCCCCCHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHhc-CchHHHHHHHHHhCCcCccccc-ccccCCCHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999986 478899999997 566653 4499999999999999999
Q ss_pred CCCcChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhhcC--C-------CCCCCcHHHHHHHHHHHHhhhh---HHHHH
Q 001082 79 GMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQG--M-------ISGGLTIKELNDLLDRLASSEN---RAEKI 146 (1160)
Q Consensus 79 gl~~~s~~~~~L~~wk~~~~~~~~GD~~~~a~~vl~~r~~--~-------~~~~LTI~eVn~~Ld~LA~~~~---~~~k~ 146 (1160)
|++++.... .| ..+||||.+|+.+++++.. . .+++|||.+||+.|++||..+| +++|.
T Consensus 95 g~~~~~~~~----~~------~~~GDlg~~a~~~~~~~~~~~~~~f~~~~~~~~ltv~~V~~~L~~la~~~g~~s~~~k~ 164 (621)
T 2hiv_A 95 NTDENSVEN----LY------KTIGDLGEVARRLKSKQQSTGILGFLGTTSKESLTVDEVYSTLSKVALTTGEGSRDLKI 164 (621)
T ss_dssp TCCHHHHHH----HH------HHHCCHHHHHHHHHHTC-------------CCCCBHHHHHHHHHHHHHCCSTTHHHHHH
T ss_pred CcCHHHHHH----HH------HhcCCHHHHHHHHHhhccccccccccccCCCCCCcHHHHHHHHHHHHhccCcccHHHHH
Confidence 999765432 34 3479999999999987652 1 3678999999999999999876 46788
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhhhhccCCcccccccc----cC------ccHHHHHhhhCCHHHHHHHHhhh-hccccc
Q 001082 147 SVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHE----FH------PDAEDLFNVTCDLKLVCEKLKDR-NQRHKR 215 (1160)
Q Consensus 147 ~iL~~ll~~~s~~E~k~l~RiIlkdLriGi~e~til~~----~h------pda~~~~~~~~DL~~V~~~L~~~-~~~~~~ 215 (1160)
.+|..||.+|++.|++||+|||+++||||+++++|+.+ |+ ++++++|++++||+.||+.|.++ ..++..
T Consensus 165 ~~l~~ll~~~~~~E~k~l~Rli~~~lRiG~~~~~vl~ala~a~~~~~~~~~~v~~~~~~~~dl~~v~~~l~~~g~~~l~~ 244 (621)
T 2hiv_A 165 RLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDATVLDAMAIAFGGGQSASEIIERAYNLRADLGNIAKIIVEKGIEALKT 244 (621)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHSSSGGGHHHHHHHHHHSCCHHHHHHHHHHHCGGGGTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCCccCccHHHHHHHHHHHhccccccHHHHHHHHhcCCCHHHHHHHHHhcCcccccc
Confidence 99999999999999999999999999999999999984 33 56889999999999999999874 346677
Q ss_pred cccccCCccccccccccCChHHHHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEeCCCCCCCcchhhHHHHHHHhcccC
Q 001082 216 QDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVD 295 (1160)
Q Consensus 216 ~~i~~g~p~~PmLA~~~~~~~~~~~~~~~~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~t~~~p~l~~~l~~~~~~~ 295 (1160)
..+++|.|++||||+++..++++++++++ +|++|+||||+|||+|++++++++|||+|+++|..+|++.+.+...+...
T Consensus 245 ~~~~~~~pv~PmLA~~~~~~~~~l~~~~~-~~~~E~K~DG~R~qi~~~g~~v~l~SR~g~~~t~~fP~l~~~~~~~l~~~ 323 (621)
T 2hiv_A 245 LKPQVGIPIRPMLAERLSNPEEILKKMGG-NAIVDYKYDGERAQIHKKEDKIFIFSRRLENITSQYPDVVDYVSKYIEGK 323 (621)
T ss_dssp CCCCTTSCCCCCEEEECSCHHHHHHHTTT-CEEEEEECSSEEEEEEEETTEEEEECTTCCBCGGGCHHHHHHHHHHBCCS
T ss_pred CCCCCCCCCCCeeCCccCchhHHHhhcCC-cEEEEEEEcceeEEEEEcCCEEEEEcCCCcCcHhhhhhHHHHHHHhCCCc
Confidence 88999999999999999988888888854 79999999999999999999999999999999999999988876556568
Q ss_pred ceeeeeeEEEEeCCCCcccccccHHHHHHHhccCCC--CCCccEEEEEEeeeeeCCcccccCCHHHHHHHHHHhhcCCCC
Q 001082 296 RCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLS--SDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKG 373 (1160)
Q Consensus 296 ~~ILDGElv~~d~~~~~~~pF~~lq~i~~~~r~~~~--~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~ 373 (1160)
+||||||||+||+.+++++||+.+|.. .+ +.... ....+++|++|||||+||++|++.||.+||++|++++.+. +
T Consensus 324 ~~iLDGElv~~d~~~g~~l~F~~L~~r-~~-~~~~~~~~~~~~v~~~vFDlL~l~G~~l~~~pl~eRr~~L~~~~~~~-~ 400 (621)
T 2hiv_A 324 EFIIEGEIVAIDPESGEMRPFQELMHR-KR-KSDIYEAIKEYPVNVFLFDLMYYEDVDYTTKPLEARRKLLESIVKPN-D 400 (621)
T ss_dssp SEEEEEEEEEBCTTTCCBCCTHHHHHH-HH-CSCHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC-S
T ss_pred CeEEeEEEEEeecCCCCcCCHHHHhhh-cc-ccchhhhcccCceEEEEEeccccCCCccccCCHHHHHHHHHHHhCcC-C
Confidence 999999999999777888999888765 21 11110 0123499999999999999999999999999999999764 4
Q ss_pred cceeeccCCCCCccccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecC--CCCCcCCCCCCCeEEEccccccC-C
Q 001082 374 RLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDL--GSKWEPGDRSGKWLKLKPEYIRA-G 450 (1160)
Q Consensus 374 ~~~i~~p~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~--ds~Y~pGkRs~~WlKlKpey~~~-g 450 (1160)
++.+. ....+.+.++++++|+++++.|+||||+|++ +|+|+||+|+.+|+|+|++|+++ |
T Consensus 401 ~i~~~-----------------~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~~~ds~Y~~G~Rs~~WlK~K~~~~~~~~ 463 (621)
T 2hiv_A 401 YVKIA-----------------HHIQANNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMA 463 (621)
T ss_dssp SEEEC-----------------CEEEESSHHHHHHHHHHHHHTTCCEEEEECCSTTCCCCTTCEEEEEEEEETTCTTSSC
T ss_pred cEEEe-----------------eeEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCCCccCCCcCCCeEEEechhccCcC
Confidence 44331 1345678999999999999999999999999 99999999999999999999984 7
Q ss_pred CcccEEEEEEEecCCCCCCccceEEEEEecCCCCCCCCceEEEEeeecCCCCHHHHHHHHHhhcccccccCCCCCCCCCc
Q 001082 451 SDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSF 530 (1160)
Q Consensus 451 ~~lDlvVIG~~~G~Grr~g~~gsfllg~~d~~~~~~~~~~f~sv~kVgtG~sdeel~~l~~~l~~~~~~~~~~~~~pP~~ 530 (1160)
+++|+||||+++|+|+|+|.+|+|+|||+++++ +.|+++|+||||||++++++|.+.|++++... .||.+
T Consensus 464 dt~D~vViG~~~g~Gkr~g~~g~lllg~~d~~~-----~~l~~vgkvgtGftd~~~~~l~~~l~~~~~~~-----~p~~~ 533 (621)
T 2hiv_A 464 DTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKT-----DSFESVCKVASGFSDEQLDELQKKLMEIKRDV-----KHPRV 533 (621)
T ss_dssp EEEEEEEEEEEECSGGGTTSEEEEEEEEEETTT-----TEEEEEEEECBSCCHHHHHHHHHHHHTTEESS-----CCTTE
T ss_pred ceeEEEEEEEEcCCCCCCCcccceEEEEEeCCC-----CeEEEEeeeCCCCCHHHHHHHHHHHhhhccCC-----CCCCc
Confidence 899999999999999999999999999998653 38999999999999999999999999998651 24432
Q ss_pred ccccCCCCCCCcEEEeCCcceEEEEEEeeeeeeeccccc---------CCceeecceeeeeecCCCccCcCCHHHHHHHH
Q 001082 531 YQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFS---------APYSLRFPRIDRVRYDKPWHDCLDVQSFVELV 601 (1160)
Q Consensus 531 ~~~~~~~~~~Pdvwi~~P~~s~Vlev~~~i~~~~s~~~~---------~g~tLRFPR~~riR~DK~~~d~~t~~el~el~ 601 (1160)
. ....|++||+ |. +|+||+++..+ .|+.|+ .|++||||||+|||+||+|+||+|++++.+|+
T Consensus 534 ~-----~~~~~~vwv~-P~--~V~EV~~~~~t-~s~~~~a~~~~~~~~~G~sLRfPrf~r~R~DK~~~ea~t~~~l~~l~ 604 (621)
T 2hiv_A 534 N-----SKMEPDIWVE-PV--YVAEIIGSEIT-ISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILEMY 604 (621)
T ss_dssp E-----CSSCCSEEEC-SC--CEEEEEESEEE-EETTCCTTTTTSSTTCEEEEESCEEEEECTTCCGGGSCBHHHHHHHH
T ss_pred c-----cCCCceEEec-Cc--eEEEEEEEEEE-cCcccccccccccCCCCceEEcCEEEEEeCCCChHHCCCHHHHHHHH
Confidence 1 2468999998 75 89999976543 577888 68999999999999999999999999999999
Q ss_pred HccC
Q 001082 602 HSSN 605 (1160)
Q Consensus 602 ~~~~ 605 (1160)
+.+.
T Consensus 605 ~~q~ 608 (621)
T 2hiv_A 605 NKQP 608 (621)
T ss_dssp HHSC
T ss_pred HHhh
Confidence 7554
No 3
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.4e-93 Score=865.46 Aligned_cols=529 Identities=24% Similarity=0.422 Sum_probs=457.0
Q ss_pred CcHHHHHHHHHHHHhhCChHHHHHHHHHHHhhcCCCc-hHhhhHhhc----CCCCCcCcccCCCCHHHHHHHHHHHhCCC
Q 001082 7 TEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSV-DYFSALRLI----LPSLDRERGSYGLKESVLANCLIDALGMS 81 (1160)
Q Consensus 7 ~~F~~l~~lle~i~~~~~~~~K~~~l~~~l~~~~~~~-~~~p~lrLl----lp~~d~er~~ygike~~L~k~~~~~lgl~ 81 (1160)
|+|+.||++|++|++++++++|+++|++||+++. ++ +++++++|+ +|..+ +++|||+++.|++++++++|++
T Consensus 4 m~~~~~a~~~~~i~~t~~r~~k~~~l~~~~~~~~-~~~~~~~~~~l~~g~~~p~~~--~~~~gi~~~~l~~~~~~~~g~~ 80 (558)
T 3gde_A 4 MLFAEFAEFCERLEKISSTLELTARIAAFLQKIE-DERDLYDVVLFITGKVYPPWD--ERELGVGIGLLYEALENVSGVK 80 (558)
T ss_dssp CBHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTCC-SHHHHHHHHHHHTTCSSCTTS--SCCCCCCHHHHHHHHHHHHCCC
T ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC-chhhHHHHHHHHcCCCCcccc--cceeCcChHHHHHHHHHHHCcC
Confidence 8999999999999999999999999999999984 45 889999988 56655 4699999999999999999999
Q ss_pred cChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhhc--CCCCCCCcHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHhC
Q 001082 82 KDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQ--GMISGGLTIKELNDLLDRLASSEN---RAEKISVLSTLIKKT 156 (1160)
Q Consensus 82 ~~s~~~~~L~~wk~~~~~~~~GD~~~~a~~vl~~r~--~~~~~~LTI~eVn~~Ld~LA~~~~---~~~k~~iL~~ll~~~ 156 (1160)
.+.... .| ...||||.+|+.++.++. ...+++|||.+||+.|++||..++ +.+|..+|..||.+|
T Consensus 81 ~~~~~~----~~------~~~GDlg~~a~~~~~~~~~~~~~~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~l~~~~ 150 (558)
T 3gde_A 81 RSEIES----MI------REYGDLGLVAEQLIKKKKMTTLAFEELTVRKVRETFDEIASLTGEGSMKRKIMLLTGLYGLA 150 (558)
T ss_dssp HHHHHH----HH------HHHSCHHHHHHHHHHHHHHHSCCCCCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHH----HH------HhcCCHHHHHHHHHhhccCCCCCCCCCcHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHhC
Confidence 765433 34 357999999999987654 234578999999999999998876 477889999999999
Q ss_pred CHHHHHHHHHHHhhhhccCCcccccccc----cC--cc-HHHHHhhhCCHHHHHHHHhh-hhccccccccccCCcccccc
Q 001082 157 NAQEMKWIIMIILKDLKLGISEKSIFHE----FH--PD-AEDLFNVTCDLKLVCEKLKD-RNQRHKRQDIEVGKAVRPQL 228 (1160)
Q Consensus 157 s~~E~k~l~RiIlkdLriGi~e~til~~----~h--pd-a~~~~~~~~DL~~V~~~L~~-~~~~~~~~~i~~g~p~~PmL 228 (1160)
++.|++||+|||+++||||+++++|+.+ || |+ ++++|++++||+.||+.|.+ +..++....+++|.|++|||
T Consensus 151 ~~~E~~~l~rli~~~lRiG~~~~~vl~ala~a~~~~~~~~~~~~~~~~dl~~v~~~l~~~g~~~l~~~~~~~~~p~~PmL 230 (558)
T 3gde_A 151 TPLEARYLTRLILNEMRLGVGEGIMRDAIARAFRADPETVERAYMITNDLGRVAVVAKKEGEEGLRKMKIEIHIPVRMML 230 (558)
T ss_dssp CHHHHHHHHHHHTTCCCSSCCHHHHHHHHHHHTTCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTCCCCTTSCCCCCE
T ss_pred CHHHHHHHHHHHhccccccccHHHHHHHHHHHhCCCHHHHHHHhccCCchHHHHHHHhhcCcccccccCCCCCCCCCCee
Confidence 9999999999999999999999999976 55 43 57899999999999999874 55566678899999999999
Q ss_pred ccccCChHHHHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEeCCCCCCCcchhhHHHHHHHhcccCceeeeeeEEEEeC
Q 001082 229 AMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDT 308 (1160)
Q Consensus 229 A~~~~~~~~~~~~~~~~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~t~~~p~l~~~l~~~~~~~~~ILDGElv~~d~ 308 (1160)
|+++.++++.+.++ .+|++|+||||+|||+|++|++|++|||+|+++|..+|++.+.+...+.. +||||||||+|+
T Consensus 231 A~~~~~~~~~~~~~--~~~~~E~K~DG~R~qi~~~g~~v~l~SR~g~d~t~~fPel~~~~~~~l~~-~~iLDGElv~~~- 306 (558)
T 3gde_A 231 AQVAESLESAVREM--RTAAVEWKFDGSRVQVHWDGSRVTIYSRRLENVTNALPDIVEEIKKSVKP-GVILDGEVIAVK- 306 (558)
T ss_dssp EEECSCHHHHHHHS--SSEEEEEECSSEEEEEEECSSCCEEEETTCCBCGGGCHHHHHHHHHHBCS-SEEEEEEEEEEE-
T ss_pred CCcCCChHHHhhhc--cceEEEEeEeeEEEEEEEeCCEEEEEcCCCCcccccchHHHHHHHhhCCC-CeEEEeEEEEcC-
Confidence 99998888888887 47999999999999999999999999999999999999999887654543 499999999994
Q ss_pred CCCcccccccHHHHHHHhccCCC--CCCccEEEEEEeeeeeCCcccccCCHHHHHHHHHHhhcCCCCcceeeccCCCCCc
Q 001082 309 SLNRFAEFGSNQEIAKAARDGLS--SDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNS 386 (1160)
Q Consensus 309 ~~~~~~pF~~lq~i~~~~r~~~~--~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~~~~ 386 (1160)
.++++||+.++...++.. ... ....+++|++|||||+|| ++++.||.+||++|++++.+ ++++.+.
T Consensus 307 -~g~~~~F~~L~~r~~~~~-~~~~~~~~~pv~~~vFDlL~l~G-~l~~~pl~eRr~~L~~~~~~-~~~i~~~-------- 374 (558)
T 3gde_A 307 -EGKPMPFQHVLRRFRRKH-DVAKMVEKIPLEAHFFDILYHDG-ECIDLPLRERRKLLESAVNE-SEKIKLA-------- 374 (558)
T ss_dssp -TTEEECHHHHHHHHHC---CTHHHHHHSCEEEEEEEEEEESS-BCTTSBHHHHHHHHHHHBCC-CSSEEEC--------
T ss_pred -CCcCCCHHHHHHHhcccc-chhhHhhcCCeEEEEEEEEeeCC-CccCCCHHHHHHHHHHhcCC-CCeEEEe--------
Confidence 367789987775443211 100 011249999999999999 99999999999999999975 4444331
Q ss_pred cccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEccccccCCCcccEEEEEEEecCCC
Q 001082 387 HVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGR 466 (1160)
Q Consensus 387 ~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKlKpey~~~g~~lDlvVIG~~~G~Gr 466 (1160)
....+.+.++++++|+++++.|+||||+|+++|+|.||+|+.+|+|+||++ +++|+||||+++|+|+
T Consensus 375 ---------~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~~----~t~D~vViG~~~g~Gk 441 (558)
T 3gde_A 375 ---------KQIVTDSVDEVRKMYDEAISAGHEGVMIKLPSSPYIPGKRGKNWLKVKAIM----ETLDLVVVGGEWGEGK 441 (558)
T ss_dssp ---------CEEEESCHHHHHHHHHHHHHTTCCEEEEECTTCBCCTTCEEEEEEEEESSC----CCEEEEEEEEEECCTT
T ss_pred ---------eeEecCCHHHHHHHHHHHHHcCCceeEEecCCCCCCCCCcCCceEEEeccc----ceEEEEEEEEEeCCCC
Confidence 134567899999999999999999999999999999999999999999974 6899999999999999
Q ss_pred CCCccceEEEEEecCCCCCCCCceEEEEeeecCCCCHHHHHHHHHhhcccccccCCCCCCCCCcccccCCCCCCCcEEEe
Q 001082 467 RGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIE 546 (1160)
Q Consensus 467 r~g~~gsfllg~~d~~~~~~~~~~f~sv~kVgtG~sdeel~~l~~~l~~~~~~~~~~~~~pP~~~~~~~~~~~~Pdvwi~ 546 (1160)
++|.+|+|+||++|+++ +.|+++|+||||||++++++|.+.|++++... ..|++||+
T Consensus 442 r~g~~g~lllg~~d~~~-----g~l~~vgkvgsGftd~~~~~l~~~l~~~~~~~------------------~~~~vwv~ 498 (558)
T 3gde_A 442 RSHWLSSFELACLDPVT-----GKLLKVGRVATGFTEEDLEELTEMFRPLIVSQ------------------QGKKVEFI 498 (558)
T ss_dssp GGGSEEEEEEEEECTTT-----CCEEEEEEECSSCCHHHHHHHHHHHGGGEEEE------------------ETTEEEEC
T ss_pred ccCccceEEEEEeeCCC-----CEEEEEeeeCCCCCHHHHHHHHHHHHhhcccC------------------CCCcEEec
Confidence 99999999999998543 37999999999999999999999999887541 24689998
Q ss_pred CCcceEEEEEEeeeeeeecccccCCceeecceeeeeecCCCccCcCCHHHHHHHHHcc
Q 001082 547 SPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSS 604 (1160)
Q Consensus 547 ~P~~s~Vlev~~~i~~~~s~~~~~g~tLRFPR~~riR~DK~~~d~~t~~el~el~~~~ 604 (1160)
|. +|+||+++.. ..|+.|++|++||||||+|+|+||+|+||+|++++.+||+.+
T Consensus 499 -P~--lV~EV~~~~~-t~s~~~~~g~~LRfPrf~r~R~DK~~~ea~t~~~l~~l~~~q 552 (558)
T 3gde_A 499 -PK--YVFEVAYQEI-QKSPKYESGYALRFPRFVRLRDDKDVDEADTIERVENLYKLQ 552 (558)
T ss_dssp -SC--CEEEEECSEE-EECSSSTTSEEEESCEEEEECTTCCGGGSCBHHHHHHHHHTT
T ss_pred -Cc--EEEEEEEeee-ecCCccCCCCEEECcEEEEEECCCChHHCCCHHHHHHHHHHh
Confidence 75 8999997543 368899999999999999999999999999999999999754
No 4
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=100.00 E-value=6.6e-93 Score=863.77 Aligned_cols=533 Identities=25% Similarity=0.452 Sum_probs=463.6
Q ss_pred CcHHHHHHHHHHHHhhCChHHHHHHHHHHHhhcCCCchHhhhHhhc----CCCCCcCcccCCCCHHHHHHHHHHHhCCCc
Q 001082 7 TEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLI----LPSLDRERGSYGLKESVLANCLIDALGMSK 82 (1160)
Q Consensus 7 ~~F~~l~~lle~i~~~~~~~~K~~~l~~~l~~~~~~~~~~p~lrLl----lp~~d~er~~ygike~~L~k~~~~~lgl~~ 82 (1160)
|+|+.||++|++|+.++++++|+++|.+||+++ .+++++|+++|+ +|..+ +++|||+++.|++++++++|+++
T Consensus 1 ~~f~~~a~~~~~l~~t~~r~~k~~~l~~~~~~~-~~~d~~~~~~ll~~~l~P~~~--~~~~gi~~~~L~~~~~~~~g~~~ 77 (561)
T 2cfm_A 1 MRYLELAQLYQKLEKTTMKLIKTRLVADFLKKV-PDDHLEFIPYLILGEVFPEWD--ERELGVGEKLLIKAVAMATGIDA 77 (561)
T ss_dssp CBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHS-CGGGTTTHHHHHTTCSSCTTC--CCCCCCCHHHHHHHHHHHHSCCH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-CchHHHHHHHHHhCCCCcccc--ccccCCCHHHHHHHHHHHHCcCH
Confidence 799999999999999999999999999999997 468899999997 56665 46999999999999999999997
Q ss_pred ChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhhcC--CCCCCCcHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHhCC
Q 001082 83 DSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQG--MISGGLTIKELNDLLDRLASSEN---RAEKISVLSTLIKKTN 157 (1160)
Q Consensus 83 ~s~~~~~L~~wk~~~~~~~~GD~~~~a~~vl~~r~~--~~~~~LTI~eVn~~Ld~LA~~~~---~~~k~~iL~~ll~~~s 157 (1160)
+.... .| ..+||||.+|+.+++++.. ...++|||.+||+.|++||..+| +++|..+|..||.+|+
T Consensus 78 ~~~~~----~~------~~~GDlg~~~~~~~~~~~~~~~~~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~ll~~~~ 147 (561)
T 2cfm_A 78 KEIEE----SV------KDTGDLGESIALAVKKKKQKSFFSQPLTIKRVYQTLVKVAETTGEGSQDKKVKYLADLFMDAE 147 (561)
T ss_dssp HHHHH----HH------HHHSCHHHHHHHHHHHHTTTCCCCCCCBHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHH----HH------HhcCCHHHHHHHHhccCcCcCcCCCCCcHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC
Confidence 65432 23 3579999999999987753 23478999999999999999876 4678899999999999
Q ss_pred HHHHHHHHHHHhhhhccCCcccccccc----c---CccHHHHHhhhCCHHHHHHHHhhhh-ccccccccccCCccccccc
Q 001082 158 AQEMKWIIMIILKDLKLGISEKSIFHE----F---HPDAEDLFNVTCDLKLVCEKLKDRN-QRHKRQDIEVGKAVRPQLA 229 (1160)
Q Consensus 158 ~~E~k~l~RiIlkdLriGi~e~til~~----~---hpda~~~~~~~~DL~~V~~~L~~~~-~~~~~~~i~~g~p~~PmLA 229 (1160)
+.|++||+|||+++||||+++++|+.+ | |++++++|++++||+.||+.|.++. .++....+.+|.|++||||
T Consensus 148 ~~e~~~l~rli~~~lriG~~~~~vl~ala~a~~~~~~~v~~~~~~~~~l~~v~~~l~~~g~~~l~~~~~~~~~P~~PmLA 227 (561)
T 2cfm_A 148 PLEAKYLARTILGTMRTGVAEGLLRDAIAMAFHVKVELVERAYMLTSDFGYVAKIAKLEGNEGLAKVQVQLGKPIKPMLA 227 (561)
T ss_dssp HHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCTTSCCCCCEE
T ss_pred HHHHHHHHHHHhccccccccHHHHHHHHHHHhcCCHHHHHHHHccCCCHHHHHHHHHhcccccccccCCCCCCCCCCeeC
Confidence 999999999999999999999999985 3 3678899999999999999988643 3455778999999999999
Q ss_pred cccCChHHHHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEeCCCCCCCcchhhHHHHHHHhcccCceeeeeeEEEEeCC
Q 001082 230 MRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTS 309 (1160)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~t~~~p~l~~~l~~~~~~~~~ILDGElv~~d~~ 309 (1160)
+++..++++++++++ +|++|+||||+|||+|+.++.+++|||+|+++|..+|++.+.+...+...++|||||||+|| .
T Consensus 228 ~~~~~~~~~~~~~~~-~~~~E~K~DG~R~~i~~~~g~v~l~SR~g~~~t~~fPel~~~~~~~l~~~~~iLDGElv~~d-~ 305 (561)
T 2cfm_A 228 QQAASIRDALLEMGG-EAEFEIKYDGARVQVHKDGSKIIVYSRRLENVTRAIPEIVEALKEAIIPEKAIVEGELVAIG-E 305 (561)
T ss_dssp EEESCHHHHHHHTTS-CEEEEEECCSEEEEEEEETTEEEEECTTCCBCGGGCHHHHHHHHHHBCSSEEEEEEEEEEBC-T
T ss_pred CcCCChhHHHhhcCC-cEEEEEeEceEEEEEEEECCEEEEEeCCCCCchhhhhhHHHHHHHhCCCcceEeeeEEEEEc-C
Confidence 999888888888754 79999999999999999999999999999999999999998876566568999999999999 5
Q ss_pred CCcccccccHHHHHHHhccCCC--CCCccEEEEEEeeeeeCCcccccCCHHHHHHHHHHhhcCCCCcceeeccCCCCCcc
Q 001082 310 LNRFAEFGSNQEIAKAARDGLS--SDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSH 387 (1160)
Q Consensus 310 ~~~~~pF~~lq~i~~~~r~~~~--~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~~~~~ 387 (1160)
+++++||+.+|...++. .... ....+++|++|||||+||+++++.||.+|+++|++++.+. +++.+.
T Consensus 306 ~g~~~~F~~L~~r~~~~-~~~~~~~~~~~~~~~vFDlL~l~g~~l~~~pl~eRr~~L~~~~~~~-~~i~~~--------- 374 (561)
T 2cfm_A 306 NGRPLPFQYVLRRFRRK-HNIEEMMEKIPLELNLFDVLYVDGQSLIDTKFIDRRRTLEEIIKQN-EKIKVA--------- 374 (561)
T ss_dssp TSSBCCTHHHHHHHHCC-SCHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC-SSEEEC---------
T ss_pred CCcccCHHHHHHHhhcc-cchhhhcccCceEEEEEEEEeECCcCcccCCHHHHHHHHHHHhCcC-CcEEEe---------
Confidence 67788998877654321 1100 0113499999999999999999999999999999999764 344321
Q ss_pred ccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEccccccCCCcccEEEEEEEecCCCC
Q 001082 388 VRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRR 467 (1160)
Q Consensus 388 v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKlKpey~~~g~~lDlvVIG~~~G~Grr 467 (1160)
....+.+.++++++|++++++|+||||+|+++|+|.||+|+.+|+|+|++| +++|++|||+++|+|++
T Consensus 375 --------~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~~----dt~D~vViG~~~g~Gkr 442 (561)
T 2cfm_A 375 --------ENLITKKVEEAEAFYKRALEMGHEGLMAKRLDAVYEPGNRGKKWLKIKPTM----ENLDLVIIGAEWGEGRR 442 (561)
T ss_dssp --------CEEEESCHHHHHHHHHHHHHTTCCEEEEECTTCCCCTTCEEEEEEEECSSC----CCEEEEEEEEEECSGGG
T ss_pred --------eeEEcCCHHHHHHHHHHHHHcCCceeEEeCCCCCCCCCCcCCCeEEEcccC----cceeEEEEEEEeCCCCC
Confidence 134578899999999999999999999999999999999999999999998 68999999999999999
Q ss_pred CCccceEEEEEecCCCCCCCCceEEEEeeecCCCCHHHHHHHHHhhcccccccCCCCCCCCCcccccCCCCCCCcEEEeC
Q 001082 468 GGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIES 547 (1160)
Q Consensus 468 ~g~~gsfllg~~d~~~~~~~~~~f~sv~kVgtG~sdeel~~l~~~l~~~~~~~~~~~~~pP~~~~~~~~~~~~Pdvwi~~ 547 (1160)
+|.+|+|+|||+++++ +.|+++|+||||||++++++|.+.+++++.. ...|++||+
T Consensus 443 ~g~~g~lllg~~d~~~-----~~~~~vgkvgsGftd~~~~~l~~~l~~~~~~------------------~~~~~~wv~- 498 (561)
T 2cfm_A 443 AHLFGSFILGAYDPET-----GEFLEVGKVGSGFTDDDLVEFTKMLKPLIIK------------------EEGKRVWLQ- 498 (561)
T ss_dssp TTSEEEEEEEEECTTT-----CCEEEEEEECSSCCHHHHHHHHHHHGGGEEE------------------EETTEEEEC-
T ss_pred CCccceEEEEEEeCCC-----CeEEEEeEeCCCCCHHHHHHHHHHHhhhccc------------------cCCCeEEeC-
Confidence 9999999999998653 3799999999999999999999999987653 135799998
Q ss_pred CcceEEEEEEeeeeeeecccccCCceeecceeeeeecCCCccCcCCHHHHHHHHHcc
Q 001082 548 PEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSS 604 (1160)
Q Consensus 548 P~~s~Vlev~~~i~~~~s~~~~~g~tLRFPR~~riR~DK~~~d~~t~~el~el~~~~ 604 (1160)
|. +|+||+++.. ..|+.|+.|++||||||.|||+||+|+||+|++++.+|++.+
T Consensus 499 P~--~V~EV~~~~~-t~s~~~~~G~~lRfPrf~r~R~DK~~~ea~t~~~l~~l~~~q 552 (561)
T 2cfm_A 499 PK--VVIEVTYQEI-QKSPKYRSGFALRFPRFVALRDDKGPEDADTIERIAQLYELQ 552 (561)
T ss_dssp SC--CEEEEECSEE-ECCSSSTTSCEEESCEEEEECTTSCGGGSCBHHHHHHHHHHH
T ss_pred Cc--eEEEEEEEEE-EcCCccCCCCEEEccEEEEEeCCCChHHCCCHHHHHHHHHHh
Confidence 75 8999997643 367889999999999999999999999999999999999744
No 5
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=100.00 E-value=7.4e-93 Score=876.60 Aligned_cols=555 Identities=25% Similarity=0.428 Sum_probs=467.0
Q ss_pred CCCCcHHHHHHHHHHHHhhCChHHHHHHHHHHHhhc--CCCchHhhhHhhcCCCC--CcCcccCCCCHHHHHHHHHHHhC
Q 001082 4 TEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTY--CDSVDYFSALRLILPSL--DRERGSYGLKESVLANCLIDALG 79 (1160)
Q Consensus 4 ~~~~~F~~l~~lle~i~~~~~~~~K~~~l~~~l~~~--~~~~~~~p~lrLllp~~--d~er~~ygike~~L~k~~~~~lg 79 (1160)
..+|+|+.||++|++|++|+++++|+++|.+||..+ ..++++.++++|+++.+ ++++.+|||+++.|++++++++|
T Consensus 53 ~~~~~~~~la~~~~~i~~t~~r~~k~~~l~~~~~~~~~~~~~dl~~~v~ll~g~l~P~~~~~elgi~~~~L~k~i~~~~g 132 (688)
T 1x9n_A 53 GQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATG 132 (688)
T ss_dssp TSCCBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTCSSCGGGCCCCCCCHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcCChHHHHHHHHHHcCCCCccccccccCcChHHHHHHHHHHHC
Confidence 357999999999999999999999999999999985 35789999999997664 45567999999999999999999
Q ss_pred CCcChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhhcCC-CCCCCcHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHh
Q 001082 80 MSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGM-ISGGLTIKELNDLLDRLASSEN---RAEKISVLSTLIKK 155 (1160)
Q Consensus 80 l~~~s~~~~~L~~wk~~~~~~~~GD~~~~a~~vl~~r~~~-~~~~LTI~eVn~~Ld~LA~~~~---~~~k~~iL~~ll~~ 155 (1160)
++.+.... .| ..+||||.+|+++++++... .+.+|||.+|++.|++||..+| +..|..+|..||.+
T Consensus 133 ~~~~~~~~----~~------~~~GDlg~va~~~~~~~~~~~~~~~lTv~~V~~~L~~ia~~~g~~s~~~k~~~l~~ll~~ 202 (688)
T 1x9n_A 133 RQLESVRA----EA------AEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVA 202 (688)
T ss_dssp CCHHHHHH----HH------HHHTCHHHHTCC--------CCCSCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHH
T ss_pred cCHHHHHH----HH------HhcCCHHHHHHHHHhcccccCCCCCCcHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHh
Confidence 99865443 23 35799999999888664332 4578999999999999999876 45688999999999
Q ss_pred CCHHHHHHHHHHHhhhhccCCccccccccc------Ccc------------------------------HHHHHhhhCCH
Q 001082 156 TNAQEMKWIIMIILKDLKLGISEKSIFHEF------HPD------------------------------AEDLFNVTCDL 199 (1160)
Q Consensus 156 ~s~~E~k~l~RiIlkdLriGi~e~til~~~------hpd------------------------------a~~~~~~~~DL 199 (1160)
|++.|++||+|+|+++||||+++++|+.++ ||. +.++|+.++|+
T Consensus 203 ~~~~E~k~l~Rli~~~lRiG~~~~~vl~ala~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~ 282 (688)
T 1x9n_A 203 CRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDL 282 (688)
T ss_dssp CCSTHHHHHHHHHTTCCCCSCCHHHHHHHHHHHHHHSCTTCCSSCSCSCTTTTSCHHHHHHHHHHHHHHHHHHHHHSCCH
T ss_pred CCHHHHHHHHHHHhcccccCccHHHHHHHHHHHhccCccccccchhhhhhhcccchhhHHHHHHHHHHHHHHHHhhCCCH
Confidence 999999999999999999999999999754 441 13579999999
Q ss_pred HHHHHHHhh-hhccc-cccccccCCccccccccccCChHHHHHhcCCCcEEEEEecceEEEEEEEe-CCEEEEEeCCCCC
Q 001082 200 KLVCEKLKD-RNQRH-KRQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKN-GSEIHYFSRSFLD 276 (1160)
Q Consensus 200 ~~V~~~L~~-~~~~~-~~~~i~~g~p~~PmLA~~~~~~~~~~~~~~~~~~~vE~K~DGeR~qih~~-g~~v~~fSR~g~d 276 (1160)
+.||..|.+ +...+ ....+++|.||+||||+++..+.++++++.+..|++|+||||+|||+|++ +|.+++|||+|++
T Consensus 283 ~~l~~~l~~~g~~~l~~~~~~~~g~pv~PMLA~~~~~~~~~l~~~~~~~~~~E~K~DG~R~qih~~~~g~v~l~SR~g~d 362 (688)
T 1x9n_A 283 DRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQED 362 (688)
T ss_dssp HHHHHHHHHHHHHHTGGGCCCCTTSCCCCCEEEEESSHHHHHHHTTTSCEEEEEEESSEEEEEEECTTSCEEEECTTSCB
T ss_pred HHHHHHHHhcchhhcccccCcCCCCCccCccCCccCCHHHHHhhcCCCeEEEEEccccEeEEEEEcCCCeEEEEeCCCCc
Confidence 999998764 23333 35779999999999999999888889999888999999999999999995 5689999999999
Q ss_pred CCcchhhHHHHHHHhc--ccCceeeeeeEEEEeCCCCcccccccHHHHHHHhccCCCC--CCccEEEEEEeeeeeCCccc
Q 001082 277 HSEYGHAMSKIIEQNV--LVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSS--DRQVLCYFAFDVLYVGDTSV 352 (1160)
Q Consensus 277 ~t~~~p~l~~~l~~~~--~~~~~ILDGElv~~d~~~~~~~pF~~lq~i~~~~r~~~~~--~~~~~~~~vFDiL~lng~sl 352 (1160)
+|..+|++.+.+...+ ...++|||||||+||+.+++++||+.+|. +.+..... ...+++|++|||||+||++|
T Consensus 363 ~t~~fPel~~~l~~~~~~~~~~~ILDGElV~~d~~~g~~~~F~~L~~---r~r~~~~~~~~~~~v~~~vFDlL~l~G~~l 439 (688)
T 1x9n_A 363 NTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTT---RKRKEVDASEIQVQVCLYAFDLIYLNGESL 439 (688)
T ss_dssp CTTTCHHHHHTSGGGBCTTCCCEEEEEEEEEECTTTCSBCCHHHHTT---SCSSCCCGGGCCSEEEEEEEEEEEETTEEC
T ss_pred ccccchHHHHHHHHhhccCCCCeEEeEEEEEEeCCCCCcCCHHHHHH---HhhcccchhhcccceEEEEEechhhcCCcc
Confidence 9999999987654332 25699999999999987788899976654 33322211 12359999999999999999
Q ss_pred ccCCHHHHHHHHHHhhcCCCCcceeeccCCCCCccccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecC--CCCC
Q 001082 353 IHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDL--GSKW 430 (1160)
Q Consensus 353 ~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~--ds~Y 430 (1160)
++.||.+||++|++++.+.++++.+. ....+.+.++++++|+++++.|+||||+|++ +|+|
T Consensus 440 ~~~Pl~eRr~~L~~~~~~~~~~i~~~-----------------~~~~~~~~~~~~~~~~~a~~~g~EGlV~K~~~~ds~Y 502 (688)
T 1x9n_A 440 VREPLSRRRQLLRENFVETEGEFVFA-----------------TSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATY 502 (688)
T ss_dssp TTSCHHHHHHHHHHHBCCBTTTEEEC-----------------CEECCCCHHHHHHHHHHHHHTSEEEEEEEESSSSCSS
T ss_pred ccCCHHHHHHHHHHhhccCCCcEEEE-----------------eeEecCCHHHHHHHHHHHHhcCCceeEEeecccCCCC
Confidence 99999999999999998776665432 1344678999999999999999999999999 9999
Q ss_pred cCCCCCCCeEEEccccccC-CCcccEEEEEEEecCCCCCCccceEEEEEecCCCCCCCCceEEEEeeecCCCCHHHHHHH
Q 001082 431 EPGDRSGKWLKLKPEYIRA-GSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAV 509 (1160)
Q Consensus 431 ~pGkRs~~WlKlKpey~~~-g~~lDlvVIG~~~G~Grr~g~~gsfllg~~d~~~~~~~~~~f~sv~kVgtG~sdeel~~l 509 (1160)
.||+|+.+|+|+|++|+++ ++++|++|||||+|+|+|+|.+|+|+|||+++++ +.|+++|+||||||++++++|
T Consensus 503 ~~GkRs~~WlK~K~~y~~~~~dt~D~vVIG~~~g~Gkr~g~~gslllg~~d~~~-----~~l~~vgkvgtGftd~~~~~l 577 (688)
T 1x9n_A 503 EIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDS-----EELQAICKLGTGFSDEELEEH 577 (688)
T ss_dssp CTTTCSEEEEEEEHHHHHSSCEEEEEEEEEEEEBCTTSBTSEEEEEEEEEETTT-----TEEEEEEEECCSCCHHHHHHH
T ss_pred CCCCcCchHheeehhhhccccccccEEEEEEEeCCCCCCCceeeEEEEEEeCCC-----CeEEEEeeeCCCCCHHHHHHH
Confidence 9999999999999999884 7899999999999999999999999999998753 389999999999999999999
Q ss_pred HHhhcccccccCCCCCCCCCcccccCCCCCCCcEEEeCCcceEEEEEEeeeeeeecccccC---------Cceeecceee
Q 001082 510 VTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSA---------PYSLRFPRID 580 (1160)
Q Consensus 510 ~~~l~~~~~~~~~~~~~pP~~~~~~~~~~~~Pdvwi~~P~~s~Vlev~~~i~~~~s~~~~~---------g~tLRFPR~~ 580 (1160)
.+.|++++.. .||.++.+. ....|++||+ |. +|+||++... ..|+.|++ |++||||||+
T Consensus 578 ~~~l~~~~~~------~~~~~~~~~--~~~~p~vwv~-P~--~V~EV~~~e~-t~S~~~~~~~g~~~~~~G~sLRfPrf~ 645 (688)
T 1x9n_A 578 HQSLKALVLP------SPRPYVRID--GAVIPDHWLD-PS--AVWEVKCADL-SLSPIYPAARGLVDSDKGISLRFPRFI 645 (688)
T ss_dssp HHHHHHTEES------SCCTTEECS--SSCCCSEEEC-SC--CEEEEEESEE-EEESSCCTTTTTSCSSCEEEEESCEEE
T ss_pred HHHhhccccC------CCCCccccC--CCCCCcEEeC-Cc--EEEEEEEEee-eccccccccccccccCCCceEECcEEE
Confidence 9999998764 133444432 2568999998 75 7999997443 35788886 8999999999
Q ss_pred eeecCCCccCcCCHHHHHHHHHccC
Q 001082 581 RVRYDKPWHDCLDVQSFVELVHSSN 605 (1160)
Q Consensus 581 riR~DK~~~d~~t~~el~el~~~~~ 605 (1160)
|||+||+|+||+|+++|.+||+++.
T Consensus 646 riR~DK~~~ea~t~~~l~~l~~~q~ 670 (688)
T 1x9n_A 646 RVREDKQPEQATTSAQVACLYRKQS 670 (688)
T ss_dssp EECTTCCGGGSCBHHHHHHHHHHHC
T ss_pred EEeCCCChHHCCCHHHHHHHHHHhH
Confidence 9999999999999999999998654
No 6
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=6e-59 Score=527.89 Aligned_cols=307 Identities=23% Similarity=0.336 Sum_probs=245.3
Q ss_pred cccCCccccccccccCChHHHHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEeCCCCCCCcchhhHHHHHHHhcccCce
Q 001082 218 IEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRC 297 (1160)
Q Consensus 218 i~~g~p~~PmLA~~~~~~~~~~~~~~~~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~t~~~p~l~~~l~~~~~~~~~ 297 (1160)
.++|.|++||||++... +. +.+.+|++|+||||+|||+|+.++++++|||+|+++|..+|++...+ ..+...++
T Consensus 3 ~~~~~p~~PmLA~~~~~-~~----~~~~~~~~E~K~DG~R~~~~~~~g~v~l~SR~g~~~t~~fPel~~~~-~~l~~~~~ 76 (310)
T 1vs0_A 3 VFEFDNLAPMLATHGTV-AG----LKASQWAFEGXWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALA-EDLADHHV 76 (310)
T ss_dssp -CCGGGCCCCEEEECCC-TT----CCTTTEEEEEECCSEEEEEEEETTEEEEEETTCCBCGGGCGGGHHHH-HHTTTCEE
T ss_pred CCCCCCccCeECCCcCC-Cc----cCCCCEEEEEccCcEEEEEEEECCEEEEEcCCCCCchhhchhHHHHH-HhCCCccE
Confidence 46889999999999852 21 24568999999999999999999999999999999999999988764 44545689
Q ss_pred eeeeeEEEEeCCCCcccccccHHHHHHHhccCCCCCCccEEEEEEeeeeeCCcccccCCHHHHHHHHHHhhcCCCCccee
Q 001082 298 ILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLET 377 (1160)
Q Consensus 298 ILDGElv~~d~~~~~~~pF~~lq~i~~~~r~~~~~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i 377 (1160)
|||||||+||.. ++ .+|+.+|. +.+. . .++|++||||++||++|+++||.+|+++|++++.+. ++.+
T Consensus 77 iLDGElv~~d~~-g~-~~F~~l~~---r~~~-----~-~~~~~vFDll~~~g~~l~~~pl~eRr~~L~~~~~~~--~i~~ 143 (310)
T 1vs0_A 77 VLDGEAVVLDSS-GV-PSFSQMQN---RGRD-----T-RVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANAT--SLTV 143 (310)
T ss_dssp EEEEEEECBCTT-SC-BCHHHHHT---CCTT-----S-CCEEEEEEEEEETTEECTTSCHHHHHHHHHHHHHHS--CCCC
T ss_pred EEeeEEEEECCC-CC-cCHHHHHh---hccC-----C-cEEEEEEEeEEECCcCcccCCHHHHHHHHHHhccCC--cEEE
Confidence 999999999874 43 48866553 2221 1 389999999999999999999999999999998643 3221
Q ss_pred eccCCCCCccccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEccccccCCCcccEEE
Q 001082 378 LVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLI 457 (1160)
Q Consensus 378 ~~p~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKlKpey~~~g~~lDlvV 457 (1160)
. + ... .+++++|++++++|+||||+|+++|+|.+|+|+.+|+|+|++| ++|++|
T Consensus 144 ~-----------~------~~~----~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~~-----~~D~vv 197 (310)
T 1vs0_A 144 P-----------E------LLP----GDGAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWN-----TQEVVI 197 (310)
T ss_dssp C-----------C------CCC----SSHHHHHHHHHHTTCCEEEEEETTCCCCTTCEEEEEEEEESSE-----EEEEEE
T ss_pred C-----------c------cCc----hHHHHHHHHHHHcCCceEEEeCCCCCcCCCCcChHHhccchhe-----EEEEEE
Confidence 1 0 111 2489999999999999999999999999999999999999997 899999
Q ss_pred EEEEecCCCCCCccceEEEEEecCCCCCCCCceEEEEeeecCCCCHHHHHHHHHhhcccccccCCCCCCCCCcccccCCC
Q 001082 458 IGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNS 537 (1160)
Q Consensus 458 IG~~~G~Grr~g~~gsfllg~~d~~~~~~~~~~f~sv~kVgtG~sdeel~~l~~~l~~~~~~~~~~~~~pP~~~~~~~~~ 537 (1160)
+|+++|+|+++|.+|+|+||++|++ .|+++|+||||||++++++|.+.|++++.. +|+|....+..
T Consensus 198 ~G~~~g~G~r~g~~g~lllg~~d~~-------g~~~vgkvgtGftd~~~~~l~~~l~~~~~~-------~~p~~~~~~~~ 263 (310)
T 1vs0_A 198 GGWRAGEGGRSSGVGSLLMGIPGPG-------GLQFAGRVGTGLSERELANLKEMLAPLHTD-------ESPFDVPLPAR 263 (310)
T ss_dssp EEEEC--------CCEEEEEEEETT-------EEEEEEEECSSCCHHHHHHHHHHHGGGBCS-------SCSBSSCCCHH
T ss_pred EEEEcCCCCccCccceEEEEEEcCC-------CCEEEEEECCCCCHHHHHHHHHHHHhhccC-------CCCccccCCcc
Confidence 9999999999999999999999753 489999999999999999999999998753 22232111112
Q ss_pred CCCCcEEEeCCcceEEEEEEeeeeeeecccccCCceeecceeeeeecCCCccCcCC
Q 001082 538 KERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLD 593 (1160)
Q Consensus 538 ~~~Pdvwi~~P~~s~Vlev~~~i~~~~s~~~~~g~tLRFPR~~riR~DK~~~d~~t 593 (1160)
..+|++||+ |. +|+||+++. ++.+++||||||++||+||+|+||+.
T Consensus 264 ~~~~~~wv~-P~--~V~ev~~~~-------~t~~g~lRfP~f~r~R~DK~~~~~~~ 309 (310)
T 1vs0_A 264 DAKGITYVK-PA--LVAEVRYSE-------WTPEGRLRQSSWRGLRPDKKPSEVVR 309 (310)
T ss_dssp HHTTEEEBC-TT--CEEEEEESC-------BCTTSCBTTCEEEEECTTSCGGGCCC
T ss_pred cCCCCEEEc-CC--EEEEEEEEE-------EcCCCeEEceEEEEEeCCCCHHHhCC
Confidence 457899998 76 799998743 34578999999999999999999973
No 7
>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1
Probab=100.00 E-value=1.4e-49 Score=458.80 Aligned_cols=305 Identities=20% Similarity=0.248 Sum_probs=238.0
Q ss_pred cccccCCccccccccccCChHHHHHhcCCCcEEEEEecceEEEEEEEe-CCEEEEEeCCCCCCCc------chhhHHHHH
Q 001082 216 QDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKN-GSEIHYFSRSFLDHSE------YGHAMSKII 288 (1160)
Q Consensus 216 ~~i~~g~p~~PmLA~~~~~~~~~~~~~~~~~~~vE~K~DGeR~qih~~-g~~v~~fSR~g~d~t~------~~p~l~~~l 288 (1160)
..+++|.|++|||+ .+.+++... ..|++|+||||+|||+|+. ++++++|||+|++++. ++|++.+.+
T Consensus 3 ~~~~~~~pv~pmL~----~~~~~l~~~--~~~~~E~K~DG~R~~~~~~~~g~v~l~SR~g~~~~~l~~~~~~~p~~~~~l 76 (348)
T 1a0i_A 3 IKTNPFKAVSFVES----AIKKALDNA--GYLIAEIKYDGVRGNICVDNTANSYWLSRVSKTIPALEHLNGFDVRWKRLL 76 (348)
T ss_dssp TCCCCEEEEECCHH----HHHHHHHHH--SSEEEEECCCSEEEEEEEETTSEEEEECTTSCBCGGGGGGCEECHHHHHHH
T ss_pred eeccCCCcCchhhh----cHHHHHhhc--CcEEEEEeeceeEEEEEEeCCCeEEEEcCCCCCCcchhhhhcccchHHHHH
Confidence 56889999999994 234455544 4799999999999999997 6899999999999876 678888877
Q ss_pred HHh--cccCceeeeeeEEEEeCCCCcccccccHHHHHHHh------------------ccC--C--CCCCccEEEEEEee
Q 001082 289 EQN--VLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAA------------------RDG--L--SSDRQVLCYFAFDV 344 (1160)
Q Consensus 289 ~~~--~~~~~~ILDGElv~~d~~~~~~~pF~~lq~i~~~~------------------r~~--~--~~~~~~~~~~vFDi 344 (1160)
... ..+.+||||||||+|+ .||+.+|...++. ... . .....+++|++|||
T Consensus 77 ~~~~~~~~~~~iLDGElv~~~------~~F~~l~~~~~~k~~~~k~v~~~~~~~r~~~~~~~~i~~~~~~~~~~~~vFDl 150 (348)
T 1a0i_A 77 NDDRCFYKDGFMLDGELMVKG------VDFNTGSGLLRTKWTDTKNQEFHEELFVEPIRKKDKVPFKLHTGHLHIKLYAI 150 (348)
T ss_dssp HSTTCCCTTEEEEEEEEEESS------SCTTTHHHHHHCCSCCSSBSSCC--------CCCSCCCCCBCTTTEEEEEEEE
T ss_pred hhhhccCCCCEEEEEEEEEeC------CCHHHHHHHhcccccccccccccccccccccccccccccccccCcEEEEEEee
Confidence 542 3456999999999974 4999888765521 000 0 01233599999999
Q ss_pred eeeC----Cccc---ccCCHHHHHHHHHHhhcCCCC-cceeeccCCCCCccccCCCCCccceecCCHHHHHHHHHHHHHc
Q 001082 345 LYVG----DTSV---IHQSLKERHELLQKVVKPSKG-RLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIEN 416 (1160)
Q Consensus 345 L~ln----g~sl---~~~pl~eRr~~L~~~v~~~~~-~~~i~~p~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~ 416 (1160)
||+| |++| +++||.+|+++|++++...++ ++.+. ....+++.++++++|++++++
T Consensus 151 l~l~~~~~G~~l~~~~~~pl~eRr~~L~~l~~~~~~~~i~~~-----------------~~~~~~~~~~~~~~~~~~~~~ 213 (348)
T 1a0i_A 151 LPLHIVESGEDCDVMTLLMQEHVKNMLPLLQEYFPEIEWQAA-----------------ESYEVYDMVELQQLYEQKRAE 213 (348)
T ss_dssp EEHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCTTSEEEEC-----------------CEEEESSHHHHHHHHHHHHTT
T ss_pred EeeCCCCCCccchhhccCCHHHHHHHHHHHhhhCCCCeEEEe-----------------ccEecCCHHHHHHHHHHHHHc
Confidence 9999 9998 899999999999999875432 22221 134567899999999999999
Q ss_pred CCceEEEecCCCCCcCCCCCCCeEEEccccccCCCcccEEEEEEEecCCCC--CCccceEEEEEecCCCCCCCCceEEEE
Q 001082 417 RDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRR--GGEVAQFLVALAERPAPDTYPRRFISF 494 (1160)
Q Consensus 417 g~EGlVlK~~ds~Y~pGkRs~~WlKlKpey~~~g~~lDlvVIG~~~G~Grr--~g~~gsfllg~~d~~~~~~~~~~f~sv 494 (1160)
|+||||+|+++|+|++|+|++ |+|+|++| ++|++|||+++|+|++ +|.+|+|+|+. + + +.|.
T Consensus 214 g~EGlv~K~~ds~Y~~Grr~~-wlK~K~~~-----~~D~vViG~~~g~g~r~~~g~~~~~~~~~-~-~------g~~~-- 277 (348)
T 1a0i_A 214 GHEGLIVKDPMCIYKRGKKSG-WWKMKPEN-----EADGIIQGLVWGTKGLANEGKVIGFEVLL-E-S------GRLV-- 277 (348)
T ss_dssp TCCCEEEECTTCEECSEEEEE-EEEESCCE-----EEEEEEEEEECCCTTTSSCSSCCEEEEEC-T-T------SCEE--
T ss_pred CCceEEEeCCCCCCCCCCccC-cEEEeecc-----cEEEEEEEEEeCCCCccCCceEEEEEEEe-C-C------CCEE--
Confidence 999999999999999998875 99999998 9999999999999986 89999999853 2 2 2454
Q ss_pred eeecCCCCHHHHHHHHHhhcccccccCCCCCCCCCcccccCCCCCCCcEEEeCCcceEEEEEEeeeeeeecccccCCcee
Q 001082 495 CRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSL 574 (1160)
Q Consensus 495 ~kVgtG~sdeel~~l~~~l~~~~~~~~~~~~~pP~~~~~~~~~~~~Pdvwi~~P~~s~Vlev~~~i~~~~s~~~~~g~tL 574 (1160)
+|||||++++++|.+.+++++.. ...+| +. . ....+|++|++ |..+.|+||++... +.+++|
T Consensus 278 --~gtGftd~~~~~l~~~l~~~~~~----~~~~~-~~-~--~~~~~~~~wv~-P~~g~v~eV~~~~~-------t~~G~l 339 (348)
T 1a0i_A 278 --NATNISRALMDEFTETVKEATLS----QWGFF-SP-Y--GIGDNDACTIN-PYDGWACQISYMEE-------TPDGSL 339 (348)
T ss_dssp --EEBCCCSHHHHHHHHHHHHHHTT----TSCCC------------CCCCCC-TTTTCEEEEEESEE-------CTTSCE
T ss_pred --EccCCCHHHHHHHHHHHhhhccc----cCCCc-cc-c--cCCCCCcEEEc-CCCcEEEEEEeeee-------cCCCce
Confidence 37999999999999999988753 11123 21 1 12467899998 88889999987432 223499
Q ss_pred ecceeeeee
Q 001082 575 RFPRIDRVR 583 (1160)
Q Consensus 575 RFPR~~riR 583 (1160)
|||||+++|
T Consensus 340 RfP~f~~~R 348 (348)
T 1a0i_A 340 RHPSFVMFR 348 (348)
T ss_dssp ESCEEEEEC
T ss_pred ECCeEeEeC
Confidence 999999998
No 8
>1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A*
Probab=100.00 E-value=1.1e-44 Score=408.39 Aligned_cols=265 Identities=17% Similarity=0.227 Sum_probs=200.8
Q ss_pred ccccccccccCChHHHHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEeCCCCCCCcchhhHHHHHHHhcccCceeeeee
Q 001082 223 AVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGE 302 (1160)
Q Consensus 223 p~~PmLA~~~~~~~~~~~~~~~~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~t~~~p~l~~~l~~~~~~~~~ILDGE 302 (1160)
+|+||||+++..+.+ ...+|++|+||||+|||+ ++ ++|||+|+++|. |.|.+.+...+ ++|||||
T Consensus 2 ~~~PmLA~~~~~~~~-----~~~~~~~E~K~DG~R~~~---~g--~l~SR~g~~~t~--p~l~~~~~~~~---~~iLDGE 66 (297)
T 1fvi_A 2 ITKPLLAATLENIED-----VQFPCLATPKIAGIRSVK---QT--QMLSRTFKPIRN--SVMNRLLTELL---PEGSDGE 66 (297)
T ss_dssp CSSCCBCEECCCGGG-----CCSSEEEEECCCSEEEEE---SS--SEECTTSCBCSC--HHHHHHHHHHS---CTTEEEE
T ss_pred CcCceeCCccCcCcC-----CCCcEEEEeeEeeeeEEe---cC--EEECCCCcccCc--HHHHHHHHhcC---CeeEEEE
Confidence 689999999876521 146899999999999998 34 999999999996 88877765433 9999999
Q ss_pred EEEEeCCCCcccccccHHHHHHHhccCCCCCCccEEEEEEeeeeeCCcccccCCHHHHHHHHHHhhcCCCC-----ccee
Q 001082 303 MLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKG-----RLET 377 (1160)
Q Consensus 303 lv~~d~~~~~~~pF~~lq~i~~~~r~~~~~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~-----~~~i 377 (1160)
+|++. .+|+.+|...++.. .....+++|+||||||+| ++.||.+|+++|++++.+.+. ++.+
T Consensus 67 lv~~~------~~F~~l~~~~~~~~---~~~~~~~~~~vFDll~l~----~~~pl~eRr~~L~~~~~~~~~~~~~~~i~~ 133 (297)
T 1fvi_A 67 ISIEG------ATFQDTTSAVMTGH---KMYNAKFSYYWFDYVTDD----PLKKYIDRVEDMKNYITVHPHILEHAQVKI 133 (297)
T ss_dssp EECTT------SCHHHHHHHHHSCC-------CCEEEEEEEECSSC----TTSCHHHHHHHHHHHHHHCGGGGGCSSEEE
T ss_pred EEECC------CCHHHHHHHhccCC---CCCccceEEEEEeccCCC----CCCCHHHHHHHHHHHHhhcCCccccceEEE
Confidence 99932 36877665543321 112335999999999998 789999999999999875432 3332
Q ss_pred eccCCCCCccccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCC----CeEEEccccccCCCcc
Q 001082 378 LVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSG----KWLKLKPEYIRAGSDL 453 (1160)
Q Consensus 378 ~~p~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~----~WlKlKpey~~~g~~l 453 (1160)
+. .....+.+.+++.++|+.++++|+||||+|+++|+|++| |+. +|+|+|+++ ++
T Consensus 134 ~~---------------~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G-Rs~~~~g~wlK~K~~~-----~~ 192 (297)
T 1fvi_A 134 IP---------------LIPVEINNITELLQYERDVLSKGFEGVMIRKPDGKYKFG-RSTLKEGILLKMKQFK-----DA 192 (297)
T ss_dssp EE---------------CCCEEECSHHHHHHHHHHHHHTTCCSEEEECTTCCCCSS-BCCTTTTSSEEECCCE-----EE
T ss_pred cC---------------cceEecCCHHHHHHHHHHHHHCCCcEEEEECCCCCcCCC-CCCCCCCCeEEECCCC-----CE
Confidence 10 003445789999999999999999999999999999999 888 999999986 89
Q ss_pred cEEEEEEEec---------------------CCCC-CCccceEEEEEecCCCCCCCCceEEEEeeecCCCCHHHHHHHHH
Q 001082 454 DVLIIGGYYG---------------------SGRR-GGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVT 511 (1160)
Q Consensus 454 DlvVIG~~~G---------------------~Grr-~g~~gsfllg~~d~~~~~~~~~~f~sv~kVgtG~sdeel~~l~~ 511 (1160)
|++|||+++| .|++ .|.+|+|+|+.. + .+|+||||||++++++|.+
T Consensus 193 d~vVig~~~g~~~~~~~~~~~~g~~~r~~~~~G~~~~g~~g~ll~~~~---g---------~~~~vgtGftd~~~~~l~~ 260 (297)
T 1fvi_A 193 EATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDYD---G---------VVFSIGTGFDADQRRDFWQ 260 (297)
T ss_dssp EEEEEEEEESCC-------------------CCCTTCCCEEEEEECST---T---------CCEEECSSCCHHHHHHHHH
T ss_pred EEEEEEEEeCccccccccccccccccccccCCCcccCCcEEEEEEccC---C---------eEEEECCCCCHHHHHHHHh
Confidence 9999999999 9998 889999999862 2 2579999999999999876
Q ss_pred hhcccccccCCCCCCCCCcccccCCCCCCCcEEEeCCcceEEEEEEeeeeeeecccccCCceeecceeeeeecCCCc
Q 001082 512 KLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPW 588 (1160)
Q Consensus 512 ~l~~~~~~~~~~~~~pP~~~~~~~~~~~~Pdvwi~~P~~s~Vlev~~~i~~~~s~~~~~g~tLRFPR~~riR~DK~~ 588 (1160)
.+.|+ . ..|+||++... +...+||||||.++|+||+|
T Consensus 261 ~~~p~-------------~--------------------g~v~ev~~~~~-------t~~g~lRfP~f~r~R~Dk~~ 297 (297)
T 1fvi_A 261 NKESY-------------I--------------------GKMVKFKYFEM-------GSKDCPRFPVFIGIRHEEDR 297 (297)
T ss_dssp THHHH-------------T--------------------TCEEEEEEECC------------CEEEEEEEEC-----
T ss_pred hcCcc-------------c--------------------CcEEEEEEEEe-------CCCCCccCCeEEEEEcCCCC
Confidence 43211 0 12678876432 22347999999999999986
No 9
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=100.00 E-value=7.2e-42 Score=379.39 Aligned_cols=248 Identities=25% Similarity=0.439 Sum_probs=202.7
Q ss_pred CCCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhcCC--CeeecchHHHHHhc
Q 001082 653 GETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG--DVIHYSWVLDCCSQ 730 (1160)
Q Consensus 653 ~~s~lF~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia~~~~~~K~~~a~~~~--~VV~p~WV~dCi~~ 730 (1160)
+.++||+|+.|||+++....++++|+++|.+|||++++|+++ .||+|++++.+.|++++++++ +||+|+||+||+++
T Consensus 6 ~~s~lF~G~~f~V~sg~~~~~k~~L~~lI~~~GG~v~~n~~~-~t~~iIa~~~~~k~~~~~~~g~~~IV~p~Wv~Dci~~ 84 (263)
T 3ii6_X 6 KISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGP-DTYCVIAGSENIRVKNIILSNKHDVVKPAWLLECFKT 84 (263)
T ss_dssp CCCCTTTTCEEEECCCC--CCHHHHHHHHHHTTCEECSSCCT-TEEEEECSSCCHHHHHHHHSCSCCEECHHHHHHHHHH
T ss_pred cCcccCCCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCC-CEEEEEeCCCCHHHHHHHhcCCCCEeehHHHHHHHhc
Confidence 568999999999999888889999999999999999999985 577777788889999998865 99999999999999
Q ss_pred CccCCCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCc------chhhHHhhhcCCC-CCCcc
Q 001082 731 KKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDP------KTIDYYKKKYCPQ-DKWSC 803 (1160)
Q Consensus 731 ~~lLp~~p~~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~~~s~~~------~~i~~l~~~~~~~-~~~~l 803 (1160)
+++||++|+|++++++++++.+++++|+|||||+.++++++|+++|++|...... ..+++++.+++.+ .++.|
T Consensus 85 ~~llp~~p~~~~~~~~~~~~~~~~~~D~~GDsy~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 164 (263)
T 3ii6_X 85 KSFVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFIDTDLNQLKEVFSGIKNSNEQTPEEMASLIADLEYRYSWDCSPLSM 164 (263)
T ss_dssp TSCCCCCGGGEEECCHHHHHHTTTTBCTTSCBSSSCCCHHHHHHHHHSCCCCCSCCHHHHHHHHHHHHHHHTCTTCGGGT
T ss_pred CCcCCCCHHHHhhCCHHHHHHHHHhccccCCccCCcCCHHHHHHHHHhCcccccCCchhhHHHHHHHHHhhcccCCcchh
Confidence 9999999999999999999999999999999999999999999999999753321 2355676666654 58899
Q ss_pred CCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCCC-ceEEEEecCCCcccchhhhHHHHHHHhhhhcc
Q 001082 804 FHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN-ATHVVVLSVLGYDVNFNSLTESFTAREKHLLW 882 (1160)
Q Consensus 804 F~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~-vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~~~ 882 (1160)
|+||+|||+++... +.+...+.+..++++++.|+++||++++.+++ ||||||.+..++...++.+++ ..
T Consensus 165 F~~~~vy~~~~~~~-~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~vTHVVv~~~~~r~~~~~~~~~---------~~ 234 (263)
T 3ii6_X 165 FRRHTVYLDSYAVI-NDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRR---------TF 234 (263)
T ss_dssp TTTCEEEECCBSST-TCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCEEEECSCCTTHHHHHHHHH---------TC
T ss_pred hCCeEEEEeccccc-CCcccccchhHHHHHHHHHHccCCEEecCCCCCceEEEECCCCccHHHHHHHHh---------hc
Confidence 99999999987532 12222233335678899999999999999995 999999863321111222221 12
Q ss_pred CCccEEeccchHHHHHHcCCccCCCCCCC
Q 001082 883 NKKLHVVRSQWLEDCLAKEQKSEEYEYSL 911 (1160)
Q Consensus 883 ~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~v 911 (1160)
.+.++||+++||++|+++|+++||++|.+
T Consensus 235 ~~~~~iV~~~Wv~dci~~~~~l~E~~Y~i 263 (263)
T 3ii6_X 235 KRKFKILKESWVTDSIDKCELQEENQYLI 263 (263)
T ss_dssp SSCCEEEETHHHHHHHHTTSCCCGGGTBC
T ss_pred CCCCEEeChHHHHHHHHcCCcCCHhhCCC
Confidence 46799999999999999999999999975
No 10
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=100.00 E-value=4.1e-41 Score=367.02 Aligned_cols=215 Identities=41% Similarity=0.651 Sum_probs=192.2
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhCChHHHHHHHHHHHhhcC------------CCchHhhhHhhcCCCCCcCcccCCCCHH
Q 001082 1 MTKTEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYC------------DSVDYFSALRLILPSLDRERGSYGLKES 68 (1160)
Q Consensus 1 ~~~~~~~~F~~l~~lle~i~~~~~~~~K~~~l~~~l~~~~------------~~~~~~p~lrLllp~~d~er~~ygike~ 68 (1160)
|+++++|+|+.||++|++|++++++.+|+.+|.+||+.|+ .+.++||++||++|+.|++|++|||+|+
T Consensus 8 ~~~~~~~~F~~l~~~~e~Ie~ts~rl~k~~il~~f~~~~~~~~~~l~~~~~~~~~dly~~l~ll~P~~d~~r~~ygi~e~ 87 (240)
T 4htp_A 8 QTVASHVPFADLCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDALHKNHKDVTDSFYPAMRLILPQLERERMAYGIKET 87 (240)
T ss_dssp CCGGGTSBHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTTTCSSCCCCSHHHHHHHSGGGCCSSCCCCCCHH
T ss_pred cccccCCcHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccccccCcccCcchHHHHHHHhCccccccccccCCCHH
Confidence 6899999999999999999999999999999999999983 2578999999999999998889999999
Q ss_pred HHHHHHHHHhCCCcChHHHHHHhhhhcCCC-CCCCCCHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHHHHhhhh---HHH
Q 001082 69 VLANCLIDALGMSKDSADAVRLINWRKGGA-APNAGNFPMVAAEVLQRRQGMISGGLTIKELNDLLDRLASSEN---RAE 144 (1160)
Q Consensus 69 ~L~k~~~~~lgl~~~s~~~~~L~~wk~~~~-~~~~GD~~~~a~~vl~~r~~~~~~~LTI~eVn~~Ld~LA~~~~---~~~ 144 (1160)
.|+|+|++++|+++++.++++|.+|++++. +...||||.+|++++++|+.. +++|||.+||+.|++||..+| +..
T Consensus 88 ~L~Kai~~~~g~~~~~~~~~~L~~wk~~~~~~~~~GDlg~va~~~~~~r~~~-~~~LTv~~V~~~L~~IA~~~g~~s~~~ 166 (240)
T 4htp_A 88 MLAKLYIELLNLPRDGKDALKLLNYRTPTGTHGDAGDFAMIAYFVLKPRCLQ-KGSLTIQQVNDLLDSIASNNSAKRKDL 166 (240)
T ss_dssp HHHHHHHHHTTCCTTSHHHHHHHTC----------CCHHHHHHHHHTTSSCC-SCCCBHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHCCCcchHHHHHHHhccccccccccCCCHHHHHHHHHHccCCC-CCCcCHHHHHHHHHHHHHhhCcccHHH
Confidence 999999999999999999999999998754 477899999999999887754 378999999999999998876 455
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhhhccCCcccccccccCccHHHHHhhhCCHHHHHHHHhhhhcccccc
Q 001082 145 KISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQ 216 (1160)
Q Consensus 145 k~~iL~~ll~~~s~~E~k~l~RiIlkdLriGi~e~til~~~hpda~~~~~~~~DL~~V~~~L~~~~~~~~~~ 216 (1160)
|..+|..||.+||+.|+|||+|||+|+||||+++++|+.+|||+++++|++++||+.||+.|++|..++...
T Consensus 167 k~~~l~~Ll~~~t~~E~k~liRiil~~lriG~~e~~vl~a~h~~~~~a~~~~~dL~~V~~~l~~~~~~L~~~ 238 (240)
T 4htp_A 167 IKKSLLQLITQSSALEQKWLIRMIIKDLKLGVSQQTIFSVFHNDAAELHNVTTDLEKVCRQLHDPSVGLSDI 238 (240)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHTCCCCSSCHHHHHHHHCTTHHHHHHHHCCHHHHHHHTCSTTSCTTC-
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHhcccccCccHhHHHHHhChhHHHHHHhhCCHHHHHHHHhCchhhHhhc
Confidence 678999999999999999999999999999999999999999999999999999999999999888777653
No 11
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=329.55 Aligned_cols=246 Identities=18% Similarity=0.287 Sum_probs=170.0
Q ss_pred CCCcccCeEEEEEcCC------CCCChHHHHHHHHHcCCEEEecCCCCc----eEEEEecCCChhhHhhhcCC-Ceeecc
Q 001082 654 ETSIFSDMVFYFVNVP------PAYSLDSLHKMVVENGGTFSMNLNNSV----THCVAADNKGLKYEAAKRRG-DVIHYS 722 (1160)
Q Consensus 654 ~s~lF~G~~F~vv~~~------~~~~k~eLeklI~~~GG~iv~n~~~s~----Th~Ia~~~~~~K~~~a~~~~-~VV~p~ 722 (1160)
.++||+|+.|||+++. ...++++|+++|++|||++++++.... +|+|+++..+++++.+.+.+ +||+|+
T Consensus 2 ~s~lF~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~~~~~t~~~~~~~iI~~~~t~k~~~~~~~~~~vV~p~ 81 (264)
T 1z56_C 2 ISNIFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISCKTTTECKALIDRGYDILHPN 81 (264)
T ss_dssp -CCCCCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCCSSCCCCCSSCCEEEECSCCGGGGGGTTTTCCCBCSS
T ss_pred ccccCCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeecCCCCccCccceEEEecCCcHHHHHHHhCCCCEEech
Confidence 5789999999997653 245799999999999999988765322 33444677889999888776 999999
Q ss_pred hHHHHHhcCccCCCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhhHHhhhc-CCCCCC
Q 001082 723 WVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKY-CPQDKW 801 (1160)
Q Consensus 723 WV~dCi~~~~lLp~~p~~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~~~s~~~~~i~~l~~~~-~~~~~~ 801 (1160)
||+||+++++++|++|||+++.++.+++.++.++|+|||||+.++++++|+.++++|....... .++..+ ....+.
T Consensus 82 Wv~dci~~~~llp~~~y~~~~~~~~~~~~~~~~~d~~gdsy~~~~~~~~l~~~l~~~~~~~~~~---~~~~~~~~~~~~~ 158 (264)
T 1z56_C 82 WVLDCIAYKRLILIEPNYCFNVSQKMRAVAEKRVDCLGDSFENDISETKLSSLYKSQLSLPPMG---ELEIDSEVRRFPL 158 (264)
T ss_dssp TTHHHHSSCSCCCCCSCBSCCCGGGTHHHHGGGBCSSSCBSSSCCCHHHHHHTTSCCSCCCCCC---CCSSCCSCCCCCC
T ss_pred HHHHHhhcCCCCCCChHHhhcCCHHHHHHHHHhccccCCccccCCCHHHHHHHHHhcccccchh---hhhhhcccccCch
Confidence 9999999999999999999999999999999999999999999999999999999887532111 111111 223578
Q ss_pred ccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCCCceEEEEecCCCc--ccchhhhHHHHHHHhhh
Q 001082 802 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGY--DVNFNSLTESFTAREKH 879 (1160)
Q Consensus 802 ~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~vTHVVV~~~~~~--~~~~~~l~~~l~~~~~~ 879 (1160)
.||+||+|||+++... ..++.+..+|+++||+++++++.+||+||...++. ......+++++......
T Consensus 159 ~lF~g~~~yl~~~~~~----------~~~~~l~~~i~~~GG~v~~~l~~~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (264)
T 1z56_C 159 FLFSNRIAYVPRRKIS----------TEDDIIEMKIKLFGGKITDQQSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKA 228 (264)
T ss_dssp C------------------------------CHHHHHHHTTSCCCCSSSCSEEECCCSSTTTHHHHSSHHHHTTTTTTTS
T ss_pred hhhCCeEEEEecCCCc----------hhHHHHHHHHHHcCCEEecccCCCEEEEEeCCCccchHHHHHHHHHHHHhhccc
Confidence 8999999999986421 13467888999999999999998777777654321 11233344433211000
Q ss_pred hccCCc-cEEeccchHHHHHHcCCccCCCCCCCC
Q 001082 880 LLWNKK-LHVVRSQWLEDCLAKEQKSEEYEYSLK 912 (1160)
Q Consensus 880 ~~~~~~-~~VVs~~Wl~~ci~~~~~v~E~~Y~v~ 912 (1160)
...+.. ++||+++||++|+++|+++||+.|.+.
T Consensus 229 ~~~~~~~~~iV~~~Wv~dci~~~~ll~e~~Y~~~ 262 (264)
T 1z56_C 229 SDTIPKIARVVAPEWVDHSINENCQVPEEDFPVV 262 (264)
T ss_dssp SSSCCCCCEEECTHHHHHHHTTSCCCSSCCC---
T ss_pred ccccCCCCEEecHHHHHHHHHcCCcCCHHHcCCC
Confidence 000123 699999999999999999999999764
No 12
>1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} SCOP: b.40.4.6 d.142.2.3
Probab=100.00 E-value=1.1e-32 Score=322.19 Aligned_cols=313 Identities=16% Similarity=0.181 Sum_probs=211.1
Q ss_pred hhhCCHHHHHHHHhhhhccccccccccCCccccccccccCChHHHH-HhcCCCcEEEEEecceEEEEEEE-----eCCEE
Q 001082 194 NVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAW-RKLHGKEVVIECKFDGDRIQIHK-----NGSEI 267 (1160)
Q Consensus 194 ~~~~DL~~V~~~L~~~~~~~~~~~i~~g~p~~PmLA~~~~~~~~~~-~~~~~~~~~vE~K~DGeR~qih~-----~g~~v 267 (1160)
.++.+|..+|..|.+.. ...|....|+.. ....+ ..+...+|++|+||||+|+|+|+ .|+.+
T Consensus 20 ~~~~~l~~~v~~l~~~~-------~~~FPg~~Pvsl-----~~~~l~~~l~~~~~~ve~K~DG~R~ll~~~~~~~~g~~v 87 (395)
T 1p16_A 20 EETKELRLMVAELLGRR-------NTGFPGSQPVSF-----ERRHLEETLMQKDYFVCEKTDGLRCLLFLINDPDKGEGV 87 (395)
T ss_dssp HHHHHHHHHHHHHHTCS-------CCSCCCEEEEEC-----CHHHHHTHHHHSCEEEEEEECSEEEEEEEEEETTTEEEE
T ss_pred HHHHHHHHHHHHHHCCC-------CCCCCCCceecc-----cHHHHHHhhCcCCEEEEECccceEEEEEEeecccCCCEE
Confidence 35566888787776421 112222233311 11223 34445689999999999999999 56789
Q ss_pred EEEeCCCCCCC---cchhhHHHHHHH-hcccCceeeeeeEEEEeCCCCcccccccHHHHHHHhccCCCCCCccEEEEEEe
Q 001082 268 HYFSRSFLDHS---EYGHAMSKIIEQ-NVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFD 343 (1160)
Q Consensus 268 ~~fSR~g~d~t---~~~p~l~~~l~~-~~~~~~~ILDGElv~~d~~~~~~~pF~~lq~i~~~~r~~~~~~~~~~~~~vFD 343 (1160)
.++||+|++++ .+||.+.+.... .....++|||||||+++... ...+++|++||
T Consensus 88 ~L~sR~~~~~~i~~~~FP~~~~~~~~~~~~~~~~vLDGElV~~~~~~----------------------~~~~~~f~~FD 145 (395)
T 1p16_A 88 FLVTRENDYYFIPNIHFPLSVNETREKPTYHHGTLLDGELVLENRNV----------------------SEPVLRYVIFD 145 (395)
T ss_dssp EEEETTCCEEECCSCCCCSCTTCCSSSCCCCSSEEEEEEEEEECCSS----------------------SCCEEEEEEEE
T ss_pred EEEeCCCceEEeccccCCcccccccchhccCCcceeeeEEEEeccCC----------------------CcceeEEEEEE
Confidence 99999999954 478876543210 11257899999999976310 01348999999
Q ss_pred eeeeCCcccccCCHHHHHHHHHHhh-cCCCCccee---eccCCCCCccccCCCCCccceecCCHHHHHHHHHH--HHHcC
Q 001082 344 VLYVGDTSVIHQSLKERHELLQKVV-KPSKGRLET---LVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKE--TIENR 417 (1160)
Q Consensus 344 iL~lng~sl~~~pl~eRr~~L~~~v-~~~~~~~~i---~~p~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~--ai~~g 417 (1160)
||++||++|+++||.+|+++|++++ .+....+.. +.......++|+.. .......++++|+. ++..|
T Consensus 146 lL~~~G~dl~~~pl~eR~~~L~~~i~~~~~~~~~~~~~~~~~~~~pf~v~~~-------~~~~~~~~~~~~~~~~~~~~g 218 (395)
T 1p16_A 146 ALAIHGKCIIDRPLPKRLGYITENVMKPFDNFKKHNPDIVNSPEFPFKVGFK-------TMLTSYHADDVLSKMDKLFHA 218 (395)
T ss_dssp EEEETTEECTTSCHHHHHHHHHHHTHHHHHHHHHHCHHHHSCTTSCCEEEEC-------CCEEGGGTHHHHTTGGGCSSC
T ss_pred EEEECCeEcccCCHHHHHHHHHHHhhcccHhhhhcCccccccccCceEEEEe-------cchhHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999965 321100000 00000001111110 01123445666665 34689
Q ss_pred CceEEEecCCCCCcCCCCCCCeEEEccccccCCCcccEEEEEEEe--------cCCCCCCcc---ce----EEEEEecCC
Q 001082 418 DEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYY--------GSGRRGGEV---AQ----FLVALAERP 482 (1160)
Q Consensus 418 ~EGlVlK~~ds~Y~pGkRs~~WlKlKpey~~~g~~lDlvVIG~~~--------G~Grr~g~~---gs----fllg~~d~~ 482 (1160)
.||||+|+.+|+|.+|+ +..|+|+||.|. .++|++|++++. |+|++ +.+ ++ |.+.++++.
T Consensus 219 ~EGlI~K~~ds~Y~~Gr-~~~wlKwK~~~~---~TvDfvl~~~~~~~~~~~~~g~G~~-~~~~dy~~~p~~~~l~v~~~~ 293 (395)
T 1p16_A 219 SDGLIYTCAETPYVFGT-DQTLLKWKPAEE---NTVDFQLEFVFNEVQDPDLDERDPT-STYLDYDAKPNLIKLRVWQGS 293 (395)
T ss_dssp EEEEEEEESSSCCCSEE-EEEEEEECCGGG---CCEEEEEEEECEEEECTTSCTTSTT-CEEEECSSCCSEEEEEEECST
T ss_pred CCeEEEEeCCCCcCCCC-ccceEEEecCCC---eEEEEEEEEEecccccccccccCcc-ccccccccccceeEEEEEeCC
Confidence 99999999999999995 469999999764 589999998876 77876 555 33 777888754
Q ss_pred CCCCCCceEEEEeeecCCCCHHHHHHHHHhhcccccccCCCCCCCCCcccccCCCCCCCcEEEeCCcceEEEEEEeeeee
Q 001082 483 APDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRT 562 (1160)
Q Consensus 483 ~~~~~~~~f~sv~kVgtG~sdeel~~l~~~l~~~~~~~~~~~~~pP~~~~~~~~~~~~Pdvwi~~P~~s~Vlev~~~i~~ 562 (1160)
. .+..|+++ |||++++++|.+.++++ ...|+||..+.
T Consensus 294 ~------~~~~f~~~--~ltd~e~~~l~~~~~~~---------------------------------~~~IvEc~~~~-- 330 (395)
T 1p16_A 294 N------VHTDFAKL--DLSDDDWERLKALEQPL---------------------------------QGRIAECRQST-- 330 (395)
T ss_dssp T------CEEEEEEE--CCCHHHHHHHHHSSSCC---------------------------------TTCEEEEEECS--
T ss_pred c------ccceeeEE--EeCHHHHHHhHhhcccC---------------------------------CCEEEEEEeec--
Confidence 2 36678887 89999999887543211 11478887642
Q ss_pred eecccccCCceeecceeeeeecCCC-ccCcCCHHHHHHHHHcc
Q 001082 563 IRSEVFSAPYSLRFPRIDRVRYDKP-WHDCLDVQSFVELVHSS 604 (1160)
Q Consensus 563 ~~s~~~~~g~tLRFPR~~riR~DK~-~~d~~t~~el~el~~~~ 604 (1160)
+ ..| ||||.|+|+||+ +++..|++++.+++...
T Consensus 331 --~---~~g----~wr~~R~R~DK~~pN~~~t~~~vl~si~~~ 364 (395)
T 1p16_A 331 --T---KKG----YWEMLRFRNDKSNGNHISVVEKILVSIKDG 364 (395)
T ss_dssp --S---STT----EEEEEEECTTCSSCCBHHHHHHHHHHHHHS
T ss_pred --C---CCC----ccEEEEEeCCCCCcChHHHHHHHHHHHHcc
Confidence 1 234 999999999999 88888888888887543
No 13
>1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A {Paramecium bursaria chlorella virus 1} SCOP: b.40.4.6 d.142.2.3 PDB: 1ckn_A* 1cko_A* 1ckn_B*
Probab=99.96 E-value=2.3e-28 Score=278.79 Aligned_cols=232 Identities=18% Similarity=0.238 Sum_probs=163.9
Q ss_pred cCCCcEEEEEecceEEEEEEEe---C-CEEEEEeCCCCCCCcchhhHHHHHHHhcccCceeeeeeEEEEeCCCCcccccc
Q 001082 242 LHGKEVVIECKFDGDRIQIHKN---G-SEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFG 317 (1160)
Q Consensus 242 ~~~~~~~vE~K~DGeR~qih~~---g-~~v~~fSR~g~d~t~~~p~l~~~l~~~~~~~~~ILDGElv~~d~~~~~~~pF~ 317 (1160)
+...+|++|+||||+|+|+|++ | +.+.+|||+|++++..+|++.. ....++|||||||++...
T Consensus 72 L~~~~y~ve~K~DG~R~ll~~~~~~g~g~v~L~sR~~~~~t~~fp~~~~-----~~~~~~vLDGElv~~~~~-------- 138 (330)
T 1ckm_A 72 LKQNKYVVSEKTDGIRFMMFFTRVFGFKVCTIIDRAMTVYLLPFKNIPR-----VLFQGSIFDGELCVDIVE-------- 138 (330)
T ss_dssp HHHSCEEEEEEECSEEEEEEEEEETTEEEEEEECTTCCEEECCCSCCCT-----TGGGCEEEEEEEEEETTT--------
T ss_pred CCcCCEEEEECcceEEEEEEEEecCCCCEEEEEeCCCCEEeccChhhhh-----ccCCCeeEEEEEEEEcCC--------
Confidence 3345799999999999999998 4 7899999999999987777531 235799999999995310
Q ss_pred cHHHHHHHhccCCCCCCccEEEEEEeeeeeCCcccccCCHHHHHHHHHHhhcCCCCcceeeccCCCCCccccCCCCCccc
Q 001082 318 SNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWS 397 (1160)
Q Consensus 318 ~lq~i~~~~r~~~~~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~~~~~v~~~~~~~~~ 397 (1160)
.. ++|++||||++||++|++.||.+|+++|++++...... +. ..++|+.. ..
T Consensus 139 ----------------~~-~~f~vFDlL~~~G~dl~~~pl~eRr~~L~~~l~~~~~~-----~~--~~~~i~~~----~~ 190 (330)
T 1ckm_A 139 ----------------KK-FAFVLFDAVVVSGVTVSQMDLASRFFAMKRSLKEFKNV-----PE--DPAILRYK----EW 190 (330)
T ss_dssp ----------------TE-EEEEEEEEEEETTEECTTSCHHHHHHHHHHHHTTCCCC-----TT--SSSEEEEC----CC
T ss_pred ----------------Ce-EEEEEEeeeeeCCcccccCCHHHHHHHHHHHHhhhccc-----CC--CCeEEEEE----EE
Confidence 02 78999999999999999999999999999998632100 00 00111110 01
Q ss_pred eecCCHHHHHHHH---HHHHHc--CCceEEEecCCCCCcCCCCCCCeEEEccccccCCCcccEEEEEEEecCCCCCCccc
Q 001082 398 LVAHNVDEVEKFF---KETIEN--RDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVA 472 (1160)
Q Consensus 398 ~~~~~~~ei~~~~---~~ai~~--g~EGlVlK~~ds~Y~pGkRs~~WlKlKpey~~~g~~lDlvVIG~~~G~Grr~g~~g 472 (1160)
.. . +++++| ..++.. |.||||+|+.+|+|.+| |+.+|+|+||.+. .++|++|++ |.|
T Consensus 191 ~~---~-~~~~~~~~~~~~~~~~yg~EGlI~K~~dspY~~G-r~~~~lKwK~~~~---~tvDfvi~~---g~g------- 252 (330)
T 1ckm_A 191 IP---L-EHPTIIKDHLKKANAIYHTDGLIIMSVDEPVIYG-RNFNLFKLKPGTH---HTIDFIIMS---EDG------- 252 (330)
T ss_dssp EE---T-TCHHHHHHHHHHHHHHSCEEEEEEEESSSCCCCE-EEEEEEEECSTTC---CCEEEEECS---TTC-------
T ss_pred Ee---h-hHHHHHHHHHHHHhccCCCceEEEeeCCCcccCC-CccCeEEEEeCCC---ceEEEEEEc---cCC-------
Confidence 11 2 344555 467778 99999999999999999 5689999999653 589998883 333
Q ss_pred eEEEEEecCCCCCCCCceEEEEeeecCCCCHHHHHHHHHhhcccccccCCCCCCCCCcccccCCCCCCCcEEEeCCcceE
Q 001082 473 QFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSI 552 (1160)
Q Consensus 473 sfllg~~d~~~~~~~~~~f~sv~kVgtG~sdeel~~l~~~l~~~~~~~~~~~~~pP~~~~~~~~~~~~Pdvwi~~P~~s~ 552 (1160)
.+|+++... +.+++|+++. +. + . + ..
T Consensus 253 --~~gl~~~~~-----~~~vp~~~~~---------------k~--------------~---------------~-~--g~ 278 (330)
T 1ckm_A 253 --TIGIFDPNL-----RKNVPVGKLD---------------GY--------------Y---------------N-K--GS 278 (330)
T ss_dssp --CEEEEETTT-----TEEEECCCCS---------------SC--------------C---------------C-T--TC
T ss_pred --eEEEEeCCC-----Cceeeeeeee---------------hh--------------h---------------c-C--Ce
Confidence 245555432 2456665543 00 0 0 1 14
Q ss_pred EEEEEeeeeeeecccccCCceeecceeeeeecCCCccCcCCHHHHHHHHH
Q 001082 553 ILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVH 602 (1160)
Q Consensus 553 Vlev~~~i~~~~s~~~~~g~tLRFPR~~riR~DK~~~d~~t~~el~el~~ 602 (1160)
|+||..+ .| ||||.|+|+||+ ++++++.+..+..
T Consensus 279 IvE~~~~----------~G----~wr~~R~R~DK~--~~n~~~t~~~v~~ 312 (330)
T 1ckm_A 279 IVECGFA----------DG----TWKYIQGRSDKN--QANDRLTYEKTLL 312 (330)
T ss_dssp EEEEEEE----------TT----EEEEEEECTTCS--SCCBHHHHHHHHH
T ss_pred EEEEEEE----------CC----ceEEEEEeCCCC--CCCHHHHHHHHHH
Confidence 7888753 34 999999999999 5666666666654
No 14
>3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens}
Probab=99.92 E-value=9.5e-26 Score=226.09 Aligned_cols=127 Identities=33% Similarity=0.617 Sum_probs=97.8
Q ss_pred EEEEEecceEEEEEEEeCCEEEEEeCCCCCCCcchhhHHH------HHHHhc--ccCceeeeeeEEEEeCCCCccccccc
Q 001082 247 VVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSK------IIEQNV--LVDRCILDGEMLVWDTSLNRFAEFGS 318 (1160)
Q Consensus 247 ~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~t~~~p~l~~------~l~~~~--~~~~~ILDGElv~~d~~~~~~~pF~~ 318 (1160)
|++|+||||+|||+|++|+++++|||||+++|..+|++.. .+...+ ...+||||||||+||+.++.|.+++.
T Consensus 1 f~~E~K~DG~R~q~~~~g~~v~l~SR~g~d~t~~fPel~~~~~l~~~i~~~~~~~~~~~iLDGEiv~~d~~~~~f~~~~~ 80 (139)
T 3vnn_A 1 FYIETKLDGERMQMHKDGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQTFMQKGT 80 (139)
T ss_dssp CCCCCCCCCEEEEEEEETTEEEEECSSCCBCTTTSCSSTTC--CCSGGGSCCCTTCCEEEEEEEEEEEETTTTEECCC--
T ss_pred CEEEEEECeEEEEEEEECCEEEEEeCCCCCchhhccchhhhcchhHHHHHHHhccCCceEeeeEEEEecCCCCCHHHHHh
Confidence 6899999999999999999999999999999999997653 122222 24789999999999987776666643
Q ss_pred HHHHHHHhccCCCCCCccEEEEEEeeeeeCCcccccCCHHHHHHHHHHhhcCCCCccee
Q 001082 319 NQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLET 377 (1160)
Q Consensus 319 lq~i~~~~r~~~~~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i 377 (1160)
...+.+. ......++||++|||||+||++|++.||.+||++|++++.+.++++++
T Consensus 81 ~~~~~~~----~~~~~~~~~~~vFDlL~l~G~~L~~~pl~eRr~~L~~l~~~~~~~~~~ 135 (139)
T 3vnn_A 81 KFDIKRM----VEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPIPGRIEI 135 (139)
T ss_dssp ---------------CCEEEEEEEEEEEETTEECSSSCHHHHHHHHHHHCCCBTTBSCB
T ss_pred hhhhhhh----hhccCceEEEEEEEEEeECCcCcccCCHHHHHHHHHHHhhcCCCeEEE
Confidence 2111110 011123599999999999999999999999999999999988887654
No 15
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.84 E-value=6.1e-21 Score=214.94 Aligned_cols=183 Identities=23% Similarity=0.351 Sum_probs=146.5
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhcCC-CeeecchHHHHHhcCcc
Q 001082 655 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKKL 733 (1160)
Q Consensus 655 s~lF~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia~~~~~~K~~~a~~~~-~VV~p~WV~dCi~~~~l 733 (1160)
+.+|+|+.||+.+... ..+.+|.++|..+||+++.+++..+||+|+....+.||..|.+.+ +||+|+||.+|+..++.
T Consensus 103 ~~~l~g~~~~~tG~~~-~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~~t~Ky~~A~~~gi~IV~~~Wl~~c~~~~~~ 181 (298)
T 3olc_X 103 NMVMSDVTISCTSLEK-EKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPILLPSWIKTLWEKSQE 181 (298)
T ss_dssp CCTTTTCEEEEESCCH-HHHHHHHHHHHHTTCEECSSCCTTCCEEEESSSCSHHHHHHHHTTCCEECHHHHHHHHHHHHT
T ss_pred ccccCCeEEEeCCCcH-HhHHHHHHHHHHCCCEEecCcCCCeeEEEEeCCCChHHHHHHHCCCeEeeHHHHHHHHHcCCc
Confidence 5699999999976543 478999999999999999999888999999988899999999888 99999999999999988
Q ss_pred CCCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhhHHhhhcCCCCCCccCCCeEEEEcc
Q 001082 734 LQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYH 813 (1160)
Q Consensus 734 Lp~~p~~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~~~s~~~~~i~~l~~~~~~~~~~~lF~gc~~yl~~ 813 (1160)
+++.++ + |.. . ...+..+|.||+||+.|
T Consensus 182 ~~~~~~-----~---------------~~~-----~---------------------------~~~~~~~f~g~~i~~tG 209 (298)
T 3olc_X 182 KKITRY-----T---------------DIN-----M---------------------------EDFKCPIFLGCIICVTG 209 (298)
T ss_dssp TCCSSG-----G---------------GSC-----G---------------------------GGGBCCTTTTCEEEECS
T ss_pred CCcccc-----c---------------ccc-----c---------------------------ccccccccCCeEEEEeC
Confidence 765431 0 000 0 00134589999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC--CceEEEEecCCCcccchhhhHHHHHHHhhhhccCCccEEecc
Q 001082 814 STEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA--NATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRS 891 (1160)
Q Consensus 814 ~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls--~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~VVs~ 891 (1160)
+.. ..++.++.+|+.+||+++..++ .|||||+....+. .++..+ ...++||++
T Consensus 210 ~~~-----------~~r~~l~~li~~~GG~~~~~ls~~~~THLI~~~~~g~--K~~~A~------------~~gi~IV~~ 264 (298)
T 3olc_X 210 LCG-----------LDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPKGQ--KYECAK------------RWNVHCVTT 264 (298)
T ss_dssp CCH-----------HHHHHHHHHHHHTTCEECSSCCTTTCCEEECSSSCSH--HHHHHH------------HTTCEEECH
T ss_pred CCC-----------ccHHHHHHHHHHcCCEEeceecCCCceEEEEeCCCch--HHHHHH------------HCCCeEEeH
Confidence 752 1367899999999999999998 4999999875432 122111 245899999
Q ss_pred chHHHHHHcCCccCCCCCCCCCCC
Q 001082 892 QWLEDCLAKEQKSEEYEYSLKPTG 915 (1160)
Q Consensus 892 ~Wl~~ci~~~~~v~E~~Y~v~~~~ 915 (1160)
+||++|++.|+++||++|.+..+.
T Consensus 265 ~Wl~dsi~~g~~lde~~Y~l~~~~ 288 (298)
T 3olc_X 265 QWFFDSIEKGFCQDESIYKTEPRP 288 (298)
T ss_dssp HHHHHHHHHTSCCCGGGSBSCC--
T ss_pred HHHHHHHHCCCCCCchhcCCCCCc
Confidence 999999999999999999987665
No 16
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2e-21 Score=226.85 Aligned_cols=186 Identities=19% Similarity=0.225 Sum_probs=131.4
Q ss_pred HhcCCCcEEEEEecceEEEEEEEe-----C-CEEEEEeCCCCCCC---cchhhHHHH----HHHhcccCceeeeeeEEEE
Q 001082 240 RKLHGKEVVIECKFDGDRIQIHKN-----G-SEIHYFSRSFLDHS---EYGHAMSKI----IEQNVLVDRCILDGEMLVW 306 (1160)
Q Consensus 240 ~~~~~~~~~vE~K~DGeR~qih~~-----g-~~v~~fSR~g~d~t---~~~p~l~~~----l~~~~~~~~~ILDGElv~~ 306 (1160)
..+...+|++++|+||.|+|+++. + +.+.++||++..++ ..||.+.+. +... ...++|||||||++
T Consensus 60 ~~L~~~dY~V~eK~DGiR~Ll~i~~~~~~g~g~v~LidR~~~~~~v~~~~FP~~~~~~~~~~l~~-~~~~TlLDGElV~d 138 (461)
T 3kyh_C 60 EKLLAHDYYVCEKTDGLRVLMFIVINPVTGEQGCFMIDRENNYYLVNGFRFPRLPQKKKEELLET-LQDGTLLDGELVIQ 138 (461)
T ss_dssp HTTSSSCEEEEEEECSEEEEEEEEECTTTCCEEEEEECSSSCEEEECCCCCCCCSSCCSSGGGTC-CCCSEEEEEEEEEE
T ss_pred HHhccCCEEEEEcccceEEEEEEeccccCCCceEEEEeCCCCeEEcccccCCcccccchhhhhhc-cCCCeEEEEEEEec
Confidence 456778999999999999999886 3 68999999999985 357765432 1112 35789999999996
Q ss_pred eCCCCcccccccHHHHHHHhccCCCCCCccEEEEEEeeeeeCCcccccCCHHHHHHHHHHhhcC-CCCcceeeccCC--C
Q 001082 307 DTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKP-SKGRLETLVPDH--G 383 (1160)
Q Consensus 307 d~~~~~~~pF~~lq~i~~~~r~~~~~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~-~~~~~~i~~p~~--~ 383 (1160)
... ++ ...+++|++||||++||+++++.||.+|+++|+++|.. ....+.. .|.. .
T Consensus 139 ~~~------~~---------------~~~~~~y~~FDlL~~~G~dl~~~pl~eR~~~Le~~I~~P~~~~~~~-~p~~~~~ 196 (461)
T 3kyh_C 139 TNP------MT---------------KLQELRYLMFDCLAINGRCLTQSPTSSRLAHLGKEFFKPYFDLRAA-YPNRCTT 196 (461)
T ss_dssp ECT------TT---------------CCEEEEEEEEEEEEETTEECSSSBHHHHHHHHHHTTHHHHHHHHHH-CSTTCSC
T ss_pred cCC------CC---------------CccceEEEEEEEEeECCcCcccCCHHHHHHHHHHHhcccchhhhhc-ccccccc
Confidence 521 10 01349999999999999999999999999999988732 1100000 0000 0
Q ss_pred CCccccCCCCCccceecCCHHHHHHHHHH--HHHcCCceEEEecCCCCCcCCCCCCCeEEEccccccCCCcccEEEE
Q 001082 384 LNSHVRPQGEPCWSLVAHNVDEVEKFFKE--TIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLII 458 (1160)
Q Consensus 384 ~~~~v~~~~~~~~~~~~~~~~ei~~~~~~--ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKlKpey~~~g~~lDlvVI 458 (1160)
..+.|+. .......+++.+|+. ++..|.||||+|+.+++|.+|.|+..|+|+||.+. .++|++++
T Consensus 197 ~pF~V~~-------K~~~~~~~~~~l~~~~~~l~~~~EGLv~k~~~spY~~Ggr~~~~lKwKp~~~---nTVDF~L~ 263 (461)
T 3kyh_C 197 FPFKISM-------KHMDFSYQLVKVAKSLDKLPHLSDGLIFTPVKAPYTAGGKDSLLLKWKPEQE---NTVDFKLI 263 (461)
T ss_dssp CCSEEEE-------CCCEEGGGHHHHHHHHTTCSSCEEEEEEEESSSBCCSSSEEEEEEECCCTTT---CCCEEEEE
T ss_pred CCcEEEe-------ccchhhhhHHHHHHhhhhccCCCCeEEEEeCCCCCcCCCcCCCeEEEEcCCC---eeEEEEEE
Confidence 0001110 000112456667763 37899999999999999999878999999999764 58999766
No 17
>3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD, lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP GUN; 2.81A {Mus musculus} PDB: 3s24_A
Probab=99.83 E-value=2.8e-21 Score=220.18 Aligned_cols=176 Identities=19% Similarity=0.322 Sum_probs=114.3
Q ss_pred CCCcEEEEEecceEEEEEEEe-CCEEEEEeCCCCCCC---cchhhHHHHHHHhcccCceeeeeeEEEEeCCCCccccccc
Q 001082 243 HGKEVVIECKFDGDRIQIHKN-GSEIHYFSRSFLDHS---EYGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGS 318 (1160)
Q Consensus 243 ~~~~~~vE~K~DGeR~qih~~-g~~v~~fSR~g~d~t---~~~p~l~~~l~~~~~~~~~ILDGElv~~d~~~~~~~pF~~ 318 (1160)
...+|++|+||||+|+|+++. ++++.++||+|.+++ ..||.+.+. .....++|||||||+++.. +
T Consensus 61 ~~~~y~v~~K~DG~R~ll~i~~~~~v~L~sR~~~~~~~~~~~FP~~~~~---~~~~~~tvLDGElV~~~~~-g------- 129 (343)
T 3rtx_A 61 EQKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDL---RMHLSNTLLDGEMIIDKVN-G------- 129 (343)
T ss_dssp HHSCEEEEEECCCEEEEEEECSTTCEEEECTTCCEEEETTCCCEETTEE---EEECCSEEEEEEEEEEESS-S-------
T ss_pred ccCCEEEEECCCceEEEEEEEcCCEEEEEeCCCCeEEeccccCCcchhh---hccCCCeEEEEEEEEecCC-C-------
Confidence 345899999999999999998 789999999999985 367875442 1246789999999998632 1
Q ss_pred HHHHHHHhccCCCCCCccEEEEEEeeeeeCCcccccCCHHHHHHHHHHh-hcCCC-----CcceeeccCCCCCccccCCC
Q 001082 319 NQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKV-VKPSK-----GRLETLVPDHGLNSHVRPQG 392 (1160)
Q Consensus 319 lq~i~~~~r~~~~~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~-v~~~~-----~~~~i~~p~~~~~~~v~~~~ 392 (1160)
...+.|++||+|++||+++++.||.+|+++|++. +.|.. +.+ ..+. ..+.|+..
T Consensus 130 ---------------~~~~~~~~FDlL~~~G~dl~~~pl~eR~~~L~~~i~~p~~~~~~~~~~--~~~~--~pf~vr~K- 189 (343)
T 3rtx_A 130 ---------------QAVPRYLIYDIIKFNAQPVGDCDFNIRLQCIEREIISPRHEKMKTGLI--DKTQ--EPFSVRPK- 189 (343)
T ss_dssp ---------------SEEEEEEEEEEEEBTTBCGGGSCHHHHHHHHHHHTHHHHHHHHHHSSC--CTTT--SSSEEEEC-
T ss_pred ---------------cEeeEEEEEEEEeECCcCcccCCHHHHHHHHHHHhhhHHHHHhhcccc--cccC--CCcEEEEE-
Confidence 0127999999999999999999999999999974 33210 000 0000 01112111
Q ss_pred CCccceecCCHHHHH-HHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEccccccCCCcccEEE
Q 001082 393 EPCWSLVAHNVDEVE-KFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLI 457 (1160)
Q Consensus 393 ~~~~~~~~~~~~ei~-~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKlKpey~~~g~~lDlvV 457 (1160)
..+.....+++. .-|..++..|.||||++..+ +|.+| |+.+|+|+||.+. .++|+.+
T Consensus 190 ---~~~~~~~~~~ll~~~~~~~l~~~~dGlIf~~~~-~Y~~G-~~~~~lKwKp~~~---~tvDF~l 247 (343)
T 3rtx_A 190 ---QFFDINISRKLLEGNFAKEVSHEMDGLIFQPIG-KYKPG-RCDDILKWKPPSL---NSVDFRL 247 (343)
T ss_dssp ---CCEEGGGHHHHSCC----------CEEEEEESS-CCCCE-EEEEEEEECCSTT---CC-----
T ss_pred ---EeEehhhHHHHHhhhhHhhcCCCCCeEEEEECc-cCcCC-CCcceEEEecCcc---eEEEEEE
Confidence 012222333322 12467889999999999999 99988 7889999999764 4899866
No 18
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=99.79 E-value=4.6e-19 Score=195.94 Aligned_cols=196 Identities=14% Similarity=0.166 Sum_probs=137.9
Q ss_pred ccCCCCcccCeEEEEEcCCC----------------------------CCChHHHHHHHHHcCCEEEecCCCC------c
Q 001082 651 IKGETSIFSDMVFYFVNVPP----------------------------AYSLDSLHKMVVENGGTFSMNLNNS------V 696 (1160)
Q Consensus 651 ~~~~s~lF~G~~F~vv~~~~----------------------------~~~k~eLeklI~~~GG~iv~n~~~s------~ 696 (1160)
+...+.||.|+.||+++... ...|++|+++|++|||++++++... +
T Consensus 9 ~p~~~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~~ 88 (259)
T 1kzy_C 9 LPLNKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQ 88 (259)
T ss_dssp CCSSTTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTCE
T ss_pred CCCCCcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCCC
Confidence 44568899999999965432 1478899999999999999887643 5
Q ss_pred eEEEEec-CCChhhHhhhcCC-CeeecchHHHHHhcCccCCCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHH
Q 001082 697 THCVAAD-NKGLKYEAAKRRG-DVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQ 774 (1160)
Q Consensus 697 Th~Ia~~-~~~~K~~~a~~~~-~VV~p~WV~dCi~~~~lLp~~p~~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~~L~~ 774 (1160)
||||+.. ..+.||..+...+ +||+++||.||+++++++|+++| ++....... ...+
T Consensus 89 t~LIa~~~~rt~K~l~ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y-~l~~g~s~~----------~~~~----------- 146 (259)
T 1kzy_C 89 CLLIADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNY-LLPAGYSLE----------EQRI----------- 146 (259)
T ss_dssp EEEEESSCCCSHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGGS-BCCCEEETT----------TTEE-----------
T ss_pred eEEEcCCCCCcHHHHHHHhcCCCCccHHHHHHHHHcCCcCCHHHc-cCCCCcccc----------cchh-----------
Confidence 8898744 4788998887777 99999999999999999999875 443211000 0000
Q ss_pred HhhccCCCCCcchhhHHhhhcCCCCCCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-----
Q 001082 775 LLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA----- 849 (1160)
Q Consensus 775 ll~~~~~s~~~~~i~~l~~~~~~~~~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls----- 849 (1160)
........+|+|++||+.+... .. ..+.+..+++++||+++..+.
T Consensus 147 --------------------~~~~~~~~LF~G~~I~i~~~~~---~~-------~~~~~~~Il~~~Ga~vv~~~~s~~~~ 196 (259)
T 1kzy_C 147 --------------------LDWQPRENPFQNLKVLLVSDQQ---QN-------FLELWSEILMTGGAASVKQHHSSAHN 196 (259)
T ss_dssp --------------------ECCCCCCCTTTTCEEEEEESCT---TT-------THHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred --------------------hhccccCCCCCCeEEEEecCCC---CC-------HHHHHHHHHHhcCCEEEeccccchhh
Confidence 0011235689999999988642 11 135788899999999887652
Q ss_pred -----CceEEEEecCCCcccchhhhHHHHHHHhhhhccCCccEEeccchHHHHHHcCCccCCCCCC
Q 001082 850 -----NATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYS 910 (1160)
Q Consensus 850 -----~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~ 910 (1160)
+.+||||.+.. ... . ..+ . .....++||+.+||.+||..|++++++.|+
T Consensus 197 ~d~~~~~~~viv~d~~--~~~-~-~~~-~-------a~~~~i~iVs~EWv~~sI~~~~ll~~~~hp 250 (259)
T 1kzy_C 197 KDIALGVFDVVVTDPS--CPA-S-VLK-C-------AEALQLPVVSQEWVIQCLIVGERIGFKQHP 250 (259)
T ss_dssp CCSCGGGCSEEEECTT--CCH-H-HHH-H-------HHHHTCCEECHHHHHHHHHHTSCCCTTSSG
T ss_pred hhccCCCCeEEEECCC--ChH-H-HHH-H-------HHhcCCCEecHHHHHHHHHhCCcCCCCcCc
Confidence 35777776432 111 1 111 1 012458999999999999999999998774
No 19
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=99.78 E-value=1.4e-18 Score=188.67 Aligned_cols=198 Identities=16% Similarity=0.172 Sum_probs=135.3
Q ss_pred CcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEec------CCChhhHhhhcCC-CeeecchHHHHH
Q 001082 656 SIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAAD------NKGLKYEAAKRRG-DVIHYSWVLDCC 728 (1160)
Q Consensus 656 ~lF~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia~~------~~~~K~~~a~~~~-~VV~p~WV~dCi 728 (1160)
..+.++.||+.+.. ...+..|++++..+||+++.+++..+||+|+.. ..|.||..++..| .||+++||.+|+
T Consensus 3 ~~~~~~~i~~sg~~-~~~~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~Wl~~~~ 81 (229)
T 1l0b_A 3 RAERDISMVVSGLT-PKEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVIKSI 81 (229)
T ss_dssp CCCCCCEEEEESCC-HHHHHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEETHHHHHHH
T ss_pred CCCCCeEEEEcCCC-HHHHHHHHHHHHHcCCEEeCCcCCCCCEEEEcCCccccccccHHHHHHHHCCCcEecHHHHHHHH
Confidence 46788999986544 345789999999999999998888899999976 4689999998888 999999999999
Q ss_pred hcCccCCCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhhHHhhhcCCCCCCccCCCeE
Q 001082 729 SQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCC 808 (1160)
Q Consensus 729 ~~~~lLp~~p~~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~~~s~~~~~i~~l~~~~~~~~~~~lF~gc~ 808 (1160)
++|+++|.++|.+.... +.........+ . .. .+..+|.||.
T Consensus 82 ~~~~~~~e~~y~~~~~~-----------------~~~~~~~~~~~---~------------r~-------~~~~lF~g~~ 122 (229)
T 1l0b_A 82 QERKLLSVHEFEVKGDV-----------------VTGSNHQGPRR---S------------RE-------SQEKLFEGLQ 122 (229)
T ss_dssp TTTSCCCSGGGBCCEET-----------------TTCSSSCHHHH---H------------HH-------HC--CCTTCE
T ss_pred HCCCcCChHHeEecccc-----------------ccccccccchh---h------------hh-------hhhhhhcCce
Confidence 99999999876443211 11000000000 0 00 0236899999
Q ss_pred EEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCCC------ceEEEEecCCC--cccchhhhHHHHHHHhhhh
Q 001082 809 IYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN------ATHVVVLSVLG--YDVNFNSLTESFTAREKHL 880 (1160)
Q Consensus 809 ~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~------vTHVVV~~~~~--~~~~~~~l~~~l~~~~~~~ 880 (1160)
|||++... ... .+.|..+|+++||+++..+.. ++|+||..... ....++.+.
T Consensus 123 ~~~~~~~~--~~~--------~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l~---------- 182 (229)
T 1l0b_A 123 IYCCEPFT--NMP--------KDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIG---------- 182 (229)
T ss_dssp EEECSCCS--SSC--------HHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC------------------------
T ss_pred EEEEecCC--CCC--------HHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccchhhhHHHHH----------
Confidence 99987321 111 457889999999999999864 57766644321 111122111
Q ss_pred ccCCccEEeccchHHHHHHcCCccCCCCCCCCCC
Q 001082 881 LWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPT 914 (1160)
Q Consensus 881 ~~~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~v~~~ 914 (1160)
....++||+++||.+||..+++++++.|.+...
T Consensus 183 -~~~~i~iVs~~WlldsI~~~~~~~~~~Y~l~~~ 215 (229)
T 1l0b_A 183 -QLCKGRLVMWDWVLDSISVYRCRDLDAYLVQNI 215 (229)
T ss_dssp ------CEEETHHHHHHHHTTSCCCGGGGBCC--
T ss_pred -HHcCCeEeehhHHHHHHhcCCcCCccceEcccc
Confidence 135689999999999999999999999988754
No 20
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=99.74 E-value=1.6e-17 Score=178.08 Aligned_cols=197 Identities=19% Similarity=0.210 Sum_probs=136.1
Q ss_pred cCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEec------CCChhhHhhhcCC-CeeecchHHHHHhcC
Q 001082 659 SDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAAD------NKGLKYEAAKRRG-DVIHYSWVLDCCSQK 731 (1160)
Q Consensus 659 ~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia~~------~~~~K~~~a~~~~-~VV~p~WV~dCi~~~ 731 (1160)
.++.||+.+.. ...++.|.++|..+||+++.+++..+||+|+.. ..+.||..++..| .||+++||.||+++|
T Consensus 3 ~~~~~~~sg~~-~~~~~~l~~~~~~~G~~~~~~~~~~~THli~~~~~~~~~~rt~k~~~a~~~g~~IV~~~Wl~~~~~~~ 81 (214)
T 1t15_A 3 KRMSMVVSGLT-PEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKER 81 (214)
T ss_dssp -CCEEEEESCC-HHHHHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHHHHHHHHTT
T ss_pred CcEEEEECCCC-HHHHHHHHHHHHHhCCEEeCccCCCCcEEEEeCCcccchhhhHHHHHHHhcCCEEeCHHHHHHHHHCC
Confidence 36778876543 456789999999999999998888899999975 3588999888888 999999999999999
Q ss_pred ccCCCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhhHHhhhcCCCCCCccCCCeEEEE
Q 001082 732 KLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYF 811 (1160)
Q Consensus 732 ~lLp~~p~~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~~~s~~~~~i~~l~~~~~~~~~~~lF~gc~~yl 811 (1160)
+++|.+||.+... .+... .....+.. + . .....+|.||.|||
T Consensus 82 ~~~~e~~y~~~~~-----------------~~~~~-~~~~~~~~----------------r--~--~~~~~lF~g~~~~~ 123 (214)
T 1t15_A 82 KMLNEHDFEVRGD-----------------VVNGR-NHQGPKRA----------------R--E--SQDRKIFRGLEICC 123 (214)
T ss_dssp SCCCGGGGBCCEE-----------------TTTBT-TCCHHHHH----------------H--T--CTTSCTTTTCEEEE
T ss_pred CcCChHHeEeecc-----------------ccccc-cccchhhH----------------h--h--cCCCcccCCCEEEE
Confidence 9999887644321 11000 00000000 0 0 01346899999999
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCCC-----ceE-EEEecCCCcccchhhhHHHHHHHhhhhccCCc
Q 001082 812 YHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN-----ATH-VVVLSVLGYDVNFNSLTESFTAREKHLLWNKK 885 (1160)
Q Consensus 812 ~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~-----vTH-VVV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 885 (1160)
++... ... .+.|..+|+.+||+++..++. .+| ||+.++.... +...++ .+.....
T Consensus 124 ~~~~~--~~~--------~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~-~~~~~~--------~~a~~~~ 184 (214)
T 1t15_A 124 YGPFT--NMP--------TDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWT-EDNGFH--------AIGQMCE 184 (214)
T ss_dssp CSCCS--SSC--------HHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCS-SCGGGG--------SSTTTCS
T ss_pred EecCC--CCC--------HHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCccc-chhhHH--------HHHHhcC
Confidence 87321 111 457789999999999998863 224 6555432111 000111 0112356
Q ss_pred cEEeccchHHHHHHcCCccCCCCCCCCC
Q 001082 886 LHVVRSQWLEDCLAKEQKSEEYEYSLKP 913 (1160)
Q Consensus 886 ~~VVs~~Wl~~ci~~~~~v~E~~Y~v~~ 913 (1160)
++||+++||.+||..++++|++.|.+..
T Consensus 185 ~~iV~~~Wi~dsi~~~~~l~~~~Y~l~~ 212 (214)
T 1t15_A 185 APVVTREWVLDSVALYQCQELDTYLIPQ 212 (214)
T ss_dssp SCEEEHHHHHHHHHHTSCCCSGGGBCCC
T ss_pred CcEEeccHHHHhHhhcCcCCCcceeecc
Confidence 8999999999999999999999998763
No 21
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=99.73 E-value=2.4e-17 Score=180.24 Aligned_cols=204 Identities=18% Similarity=0.216 Sum_probs=133.1
Q ss_pred CcccCeEEEEEcC--CCCCChHHHHHHHHHcCCEEEec--------CC-C-----------------CceEEEEecC-CC
Q 001082 656 SIFSDMVFYFVNV--PPAYSLDSLHKMVVENGGTFSMN--------LN-N-----------------SVTHCVAADN-KG 706 (1160)
Q Consensus 656 ~lF~G~~F~vv~~--~~~~~k~eLeklI~~~GG~iv~n--------~~-~-----------------s~Th~Ia~~~-~~ 706 (1160)
++|+||.|||++. .....+++|+++|.+|||+++.+ +. . ..||+|+... .+
T Consensus 1 ~lF~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt 80 (241)
T 2vxb_A 1 LIFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRK 80 (241)
T ss_dssp CTTTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCC
T ss_pred CCCCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCc
Confidence 4899999999877 45678999999999999999886 11 0 1377776432 47
Q ss_pred hhhHhhhcCC-CeeecchHHHHHhcCccCCCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCc
Q 001082 707 LKYEAAKRRG-DVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDP 785 (1160)
Q Consensus 707 ~K~~~a~~~~-~VV~p~WV~dCi~~~~lLp~~p~~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~~~s~~~ 785 (1160)
.||..+...+ |||+|+||.||+++++++|+++ |++.........- ..-++-..|.... .+
T Consensus 81 ~K~~~ala~gipiV~~~Wi~dc~~~~~~~~~~~-ylL~~~~s~~~~~--~~~~~~~~~~~~~---~l------------- 141 (241)
T 2vxb_A 81 VKYLEALAFNIPCVHPQFIKQCLKMNRVVDFSP-YLLASGYSHRLDC--TLSQRIEPFDTTD---SL------------- 141 (241)
T ss_dssp HHHHHHHHHTCCEECTHHHHHHHHHTSCCCSGG-GBBEEEEETTTTE--EEECCCCCCCTTS---CH-------------
T ss_pred HHHHHHHHcCCCEecHHHHHHHHHcCCcCChhh-ccCCCCcchhccc--hhhccccCCChhh---HH-------------
Confidence 8998888777 9999999999999999999998 5665443221100 0000001111000 01
Q ss_pred chhhHHhhhcCCCCCCccCCCeEEEEccCCCCCCCh---hHHHHHHHHHHHHHHHHhcCCEE--EccCC-CceEEEEecC
Q 001082 786 KTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPD---WEVLLGLALRRLKLEISFHGGKV--CNNLA-NATHVVVLSV 859 (1160)
Q Consensus 786 ~~i~~l~~~~~~~~~~~lF~gc~~yl~~~~~~~~~d---~~~i~~~~~~~l~~~I~~~GG~v--~~~ls-~vTHVVV~~~ 859 (1160)
++.+. .+..||+|++|||....... .. ...-.|..++.+..+++++||++ +..++ ..+|+|+.+.
T Consensus 142 --~~~~~------~~~~Lf~g~~i~~~~~~~~~-~~~~~~~~~~g~~~~~~~~i~~~~Ga~~~~v~~~~~~~~d~v~~~~ 212 (241)
T 2vxb_A 142 --YDRLL------ARKGPLFGKKILFIIPEAKS-WQKKIENTEQGQKALAHVYHALALGADVEIRPNVAHLECDLILTMD 212 (241)
T ss_dssp --HHHHH------HCCCTTTTCEEEECCCC-------------CHHHHHHHHHHHHHTTCEEECCSCCSSCCCSEEECSS
T ss_pred --HHHHh------hcCcCCCCcEEEEEeCCCcc-cccccccccccchHHHHHHHHHHcCCceecccccccCCccEEEECC
Confidence 11111 13468999999997532100 00 00000123578899999999999 54554 3678888642
Q ss_pred CCcccchhhhHHHHHHHhhhhccCCccEEeccchHHHHHHcCCccC
Q 001082 860 LGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSE 905 (1160)
Q Consensus 860 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~VVs~~Wl~~ci~~~~~v~ 905 (1160)
. . . .....++||+++||.+|+..|++++
T Consensus 213 ~-~---~--------------~~~~~~~iV~~eWv~~~i~~g~~l~ 240 (241)
T 2vxb_A 213 G-N---I--------------VDETNCPVVDPEWIVECLISQSDIS 240 (241)
T ss_dssp S-C---C--------------CSSCSSCEECHHHHHHHHHHTSCTT
T ss_pred c-c---c--------------cccCCCCEecHHHHHHHHHhceecC
Confidence 1 1 0 1246799999999999999999886
No 22
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=99.72 E-value=1.9e-17 Score=176.04 Aligned_cols=181 Identities=17% Similarity=0.238 Sum_probs=130.3
Q ss_pred EEEEcCCCCCChHHHHHHHHHcCC-EEEecCCCCceEEEEecC-CChhhHhhhcCC-CeeecchHHHHHhcCccCCCCcc
Q 001082 663 FYFVNVPPAYSLDSLHKMVVENGG-TFSMNLNNSVTHCVAADN-KGLKYEAAKRRG-DVIHYSWVLDCCSQKKLLQLQPK 739 (1160)
Q Consensus 663 F~vv~~~~~~~k~eLeklI~~~GG-~iv~n~~~s~Th~Ia~~~-~~~K~~~a~~~~-~VV~p~WV~dCi~~~~lLp~~p~ 739 (1160)
|+.. +-+...+++|.++|..+|| .+..+++..+||+|+... .|.||..++..+ .||+++||.+|++.|+.+|.++|
T Consensus 14 ~~~s-gl~~~~~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~~~rT~K~l~ai~~g~~Iv~~~Wv~~~~~~g~~l~e~~y 92 (199)
T 3u3z_A 14 LVMT-SMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWSLELGHWISEEPF 92 (199)
T ss_dssp EEEE-SCCHHHHHHHHHHHHHHCSCEEESSCCTTEEEEEESSCCCBHHHHHHHHTTCEEEETHHHHHHHHHTSCCCSGGG
T ss_pred EEEc-CCCHHHHHHHHHHHHHcCCcEEecCCCCCCeEEEECCCCCCHHHHHHHHCCCcEEeHHHHHHHhhCCCCCChhhc
Confidence 4544 4345678899999999998 566888888999999763 789999999888 99999999999999999998876
Q ss_pred cccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhhHHhhhcCCCCCCccCCCe-EEEEccCCCCC
Q 001082 740 YYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGC-CIYFYHSTEPL 818 (1160)
Q Consensus 740 ~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~~~s~~~~~i~~l~~~~~~~~~~~lF~gc-~~yl~~~~~~~ 818 (1160)
.+-....... ...+..... .......||.|| .||+.++..
T Consensus 93 ~~~~~~~~~~-------------------~~rl~r~~~------------------~~~~~~~LF~g~~~~~v~~~~~-- 133 (199)
T 3u3z_A 93 ELSHHFPAAP-------------------LCRSECHLS------------------AGPYRGTLFADQPVMFVSPASS-- 133 (199)
T ss_dssp BCTTTCTHHH-------------------HHHHHHHHC------------------SSSCCCCTTTTSCCEEECTTCS--
T ss_pred cccCCccccc-------------------cchhhhhhh------------------cccccchhhCCCeEEEECCCCC--
Confidence 3322111000 001111000 001234799999 477776543
Q ss_pred CChhHHHHHHHHHHHHHHHHhcCCEEEccCCCceEEEEecCCCcccchhhhHHHHHHHhhhhccCCccEEeccchHHHHH
Q 001082 819 SPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCL 898 (1160)
Q Consensus 819 ~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~VVs~~Wl~~ci 898 (1160)
.. .+.|+.+|+.+||+++.++..++++|.+. . .+ ......+|+++||.|||
T Consensus 134 -~~--------~~~L~~lI~~~GG~v~~~~~~~~iiI~~~-~-----~~--------------~~~~~~~V~p~Wi~DsI 184 (199)
T 3u3z_A 134 -PP--------VAKLCELVHLCGGRVSQVPRQASIVIGPY-S-----GK--------------KKATVKYLSEKWVLDSI 184 (199)
T ss_dssp -SC--------HHHHHHHHHHTTCCBCSSGGGCSEEESCC-C-----SC--------------CCTTCEEECHHHHHHHH
T ss_pred -CC--------HHHHHHHHHHcCCEEeccCCCCEEEEeCC-c-----hh--------------ccCCCcEEChhHHHHHH
Confidence 12 35789999999999999998777665332 1 00 12456899999999999
Q ss_pred HcCCccCCCCCCCC
Q 001082 899 AKEQKSEEYEYSLK 912 (1160)
Q Consensus 899 ~~~~~v~E~~Y~v~ 912 (1160)
.+++++|.++|.+.
T Consensus 185 ~~~~llp~~~Y~~~ 198 (199)
T 3u3z_A 185 TQHKVCAPENYLLS 198 (199)
T ss_dssp HHTSCCCGGGGBCC
T ss_pred HcCCcCChHhccCC
Confidence 99999999999875
No 23
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=99.70 E-value=8.8e-17 Score=172.28 Aligned_cols=181 Identities=16% Similarity=0.237 Sum_probs=130.0
Q ss_pred CeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEec---CCChhhHhhhcCC-CeeecchHHHHHhcCccCC
Q 001082 660 DMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAAD---NKGLKYEAAKRRG-DVIHYSWVLDCCSQKKLLQ 735 (1160)
Q Consensus 660 G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia~~---~~~~K~~~a~~~~-~VV~p~WV~dCi~~~~lLp 735 (1160)
++.||+.+. ....+..|.+++..+||+++.+++..+||+|+.. ..+.||..+...+ .||+++||.+|+++|+.+|
T Consensus 2 ~~vi~~sg~-~~~~~~~l~~~~~~~G~~~~~~~~~~~THlV~~~~~~~rt~K~l~a~~~g~~IV~~~Wl~~c~~~~~~~~ 80 (210)
T 2nte_A 2 PLVLIGSGL-SSEQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRRKVCEQ 80 (210)
T ss_dssp CCEEEESSC-CHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESSSSCCCSHHHHHHHHTTCEEEETHHHHHHHHHTSCCC
T ss_pred CEEEEECCC-CHHHHHHHHHHHHHcCCEEeCCCCCCCeEEEEcCCCcchHHHHHHHHhcCCEEecHHHHHHHHHcCCcCC
Confidence 567786543 3456789999999999999999988899999976 5789998888888 9999999999999999999
Q ss_pred CCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhhHHhhhcCCCCCCccCCCeEEEEccCC
Q 001082 736 LQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHST 815 (1160)
Q Consensus 736 ~~p~~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~~~s~~~~~i~~l~~~~~~~~~~~lF~gc~~yl~~~~ 815 (1160)
.++|.+-. .+ .+ ..+. +.+ ....+|.||.||+.+..
T Consensus 81 e~~y~~~~-~~-~~--------------------~r~~------------------~~~----~~~~lF~g~~~~l~~~~ 116 (210)
T 2nte_A 81 EEKYEIPE-GP-RR--------------------SRLN------------------REQ----LLPKLFDGCYFYLWGTF 116 (210)
T ss_dssp GGGTBCTT-HH-HH--------------------HHHH------------------HHT----TCCCTTTTCEEEECSCC
T ss_pred hhhccCCC-CC-hh--------------------hhhc------------------ccc----ccccccCceEEEEeccC
Confidence 88753321 10 00 0000 000 12458999999999732
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHhcCCEEEccC------------------------CCceEEEEecCCCcccchhhhHH
Q 001082 816 EPLSPDWEVLLGLALRRLKLEISFHGGKVCNNL------------------------ANATHVVVLSVLGYDVNFNSLTE 871 (1160)
Q Consensus 816 ~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~l------------------------s~vTHVVV~~~~~~~~~~~~l~~ 871 (1160)
. ... .+.|..+|+.+||+++... ..|||.||..+. .......
T Consensus 117 ~--~~~--------~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~-~~~~~~~--- 182 (210)
T 2nte_A 117 K--HHP--------KDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDL-CNYHPER--- 182 (210)
T ss_dssp S--SSC--------HHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSC-SSCCCSC---
T ss_pred C--CCC--------HHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEeccc-cccCHHH---
Confidence 1 112 4688999999999998621 137899887643 1100000
Q ss_pred HHHHHhhhhccCCccEEeccchHHHHHHcCCccCCCC
Q 001082 872 SFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYE 908 (1160)
Q Consensus 872 ~l~~~~~~~~~~~~~~VVs~~Wl~~ci~~~~~v~E~~ 908 (1160)
....++++|+++||.+||..++++|.++
T Consensus 183 ---------~~~~~v~~V~~~Wl~dcI~~~~llp~~~ 210 (210)
T 2nte_A 183 ---------VRQGKVWKAPSSWFIDCVMSFELLPLDS 210 (210)
T ss_dssp ---------SEETTEEEEEHHHHHHHHHHTSCCCSCC
T ss_pred ---------HhccCcccccHHHHHHHHHhCeeccCCC
Confidence 0135678999999999999999998753
No 24
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=99.69 E-value=1.1e-16 Score=171.51 Aligned_cols=194 Identities=18% Similarity=0.277 Sum_probs=134.3
Q ss_pred CcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecC-CChhhHhhhcCC-CeeecchHHHHHhcCcc
Q 001082 656 SIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADN-KGLKYEAAKRRG-DVIHYSWVLDCCSQKKL 733 (1160)
Q Consensus 656 ~lF~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia~~~-~~~K~~~a~~~~-~VV~p~WV~dCi~~~~l 733 (1160)
....++.||+.+... ++++++|..+||.++.+++. +||+|+... .|.||..++..+ +||+++||.+|++++++
T Consensus 8 ~~~~~~~v~~sG~~~----~~~~~~i~~lGg~~~~~~~~-~THlI~~~~~rt~K~l~a~~~g~~IV~~~Wl~~~~~~~~~ 82 (209)
T 2etx_A 8 QESTAPKVLFTGVVD----ARGERAVLALGGSLAGSAAE-ASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGFF 82 (209)
T ss_dssp ----CCEEEECSSCC----HHHHHHHHHTTCEECSSTTT-CSEEECSSCCCSHHHHHHHHHTCCEECTHHHHHHHHHTSC
T ss_pred ccCCCcEEEEeCCCc----HHHHHHHHHCCCEEeCCCCC-ceEEEECCCCCCHHHHHHHhcCCccccHHHHHHHHHcCCC
Confidence 345577777754332 56799999999999999874 999998653 689999998888 99999999999999999
Q ss_pred CCCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhhHHhhhcCCCCCCccCCCeEEEEcc
Q 001082 734 LQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYH 813 (1160)
Q Consensus 734 Lp~~p~~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~~~s~~~~~i~~l~~~~~~~~~~~lF~gc~~yl~~ 813 (1160)
+|.++| ++. .+..... ||- + +...+.+. + ...+|.|+.||+.+
T Consensus 83 l~e~~y-~~~-~~~~~~~-------~~~------~---l~~~~~~a------------~-------~~~lF~g~~~~~~~ 125 (209)
T 2etx_A 83 LPPDEY-VVT-DPEQEKN-------FGF------S---LQDALSRA------------R-------ERRLLEGYEIYVTP 125 (209)
T ss_dssp CCSGGG-BCC-CHHHHHH-------TTC------C---HHHHHHHH------------H-------HSCTTTTCEEEECT
T ss_pred CChhhc-ccc-Chhhhhh-------cCC------C---HHHHHhhh------------h-------hCCCcCCcEEEEeC
Confidence 998875 443 2211111 111 1 12122111 0 12589999999998
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCCC---ceEEEEecCCCcccchhhhHHHHHHHhhhhccCCccEEec
Q 001082 814 STEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN---ATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVR 890 (1160)
Q Consensus 814 ~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~---vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~VVs 890 (1160)
+.. +. .+.|..+|+.+||++...+.. -+|||+.... +...++... ...++||+
T Consensus 126 ~~~---~~--------~~~l~~li~~~GG~v~~~~~~~~~~~~ivI~~~~----d~~~~~~~~---------~~~i~vvs 181 (209)
T 2etx_A 126 GVQ---PP--------PPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQ----DFPHCSIPL---------RVGLPLLS 181 (209)
T ss_dssp TCS---SC--------HHHHHHHHHHTTCEECSSCCCSCCTTEEEECCGG----GGGGCHHHH---------HHTCCEEC
T ss_pred CCC---CC--------HHHHHHHHHHCCCEEECCCCCCCCCceEEEECcc----cHHHHHHHH---------HCCCeEEc
Confidence 642 22 357889999999999998864 3788885422 222222211 23578999
Q ss_pred cchHHHHHHcCCccCCCCCCCCCCCC
Q 001082 891 SQWLEDCLAKEQKSEEYEYSLKPTGM 916 (1160)
Q Consensus 891 ~~Wl~~ci~~~~~v~E~~Y~v~~~~~ 916 (1160)
.+||.+||..++ ++++.|.+..+.+
T Consensus 182 ~eWi~~sI~~q~-ld~e~y~l~~~~~ 206 (209)
T 2etx_A 182 PEFLLTGVLKQE-AKPEAFVLSPLEM 206 (209)
T ss_dssp THHHHHHHHHTC-CCGGGGBCCTTC-
T ss_pred HHHHHHHHHhcc-cChHHheecCCCc
Confidence 999999999876 5999999988774
No 25
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.51 E-value=2.3e-14 Score=134.53 Aligned_cols=88 Identities=24% Similarity=0.416 Sum_probs=75.0
Q ss_pred CCCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCC-CCceEEEEecCCChhhHhhhcCCCeeecchHHHHHhcC
Q 001082 653 GETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLN-NSVTHCVAADNKGLKYEAAKRRGDVIHYSWVLDCCSQK 731 (1160)
Q Consensus 653 ~~s~lF~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~~-~s~Th~Ia~~~~~~K~~~a~~~~~VV~p~WV~dCi~~~ 731 (1160)
..+.+|+|+.||+ ++....++++|+++|.+|||+++.+++ ..+||+|+....+.|++.+. ..+||+|+||+||+++|
T Consensus 8 ~~~~lF~g~~~~i-sg~~~~~~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~~~-~~~iV~p~Wl~dci~~~ 85 (97)
T 2ebw_A 8 TSSTIFSGVAIYV-NGYTDPSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAG 85 (97)
T ss_dssp CCCCTTTTCEEEE-CSSCSSCHHHHHHHHHHTTCEECSSCCSSSCCEEECSCCCTTHHHHTS-SSCCBCTHHHHHHHHHT
T ss_pred CCCCCCCCeEEEE-eCCCcccHHHHHHHHHHcCCEEeeecCCCCCEEEEecCCChHHHHHhc-CCCEeChHHHHHHHHcC
Confidence 4568999999996 555556799999999999999987665 57999998877788888875 34999999999999999
Q ss_pred ccCCCCccccc
Q 001082 732 KLLQLQPKYYL 742 (1160)
Q Consensus 732 ~lLp~~p~~~l 742 (1160)
+++|++||+++
T Consensus 86 ~~l~~~~Y~l~ 96 (97)
T 2ebw_A 86 RLLSYIPYQLY 96 (97)
T ss_dssp SCCCSGGGBSC
T ss_pred CccCchHcEec
Confidence 99999998654
No 26
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=99.47 E-value=1.4e-13 Score=149.81 Aligned_cols=210 Identities=16% Similarity=0.165 Sum_probs=135.1
Q ss_pred cCeEEEEEcCCCCCChHHHHHHHHHcCCEEEe--cCCCCceEEEEecC-CChhhHhhhcCC-CeeecchHHHHHhcCccC
Q 001082 659 SDMVFYFVNVPPAYSLDSLHKMVVENGGTFSM--NLNNSVTHCVAADN-KGLKYEAAKRRG-DVIHYSWVLDCCSQKKLL 734 (1160)
Q Consensus 659 ~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~--n~~~s~Th~Ia~~~-~~~K~~~a~~~~-~VV~p~WV~dCi~~~~lL 734 (1160)
+++.|++.+.. ...+.++.++|.++||+++. +++..+||+|+... .|.||-.++..| .||+++||.+|+++|+.+
T Consensus 8 ~~~~~~~Sg~~-~~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~RT~K~l~aia~G~wIvs~~wl~~s~~~g~~l 86 (235)
T 3al2_A 8 KQYIFQLSSLN-PQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRTAGHFV 86 (235)
T ss_dssp CCCEEEEESCC-HHHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCCCSHHHHHHHHTTCEEECTHHHHHHHHHTSCC
T ss_pred CCEEEEEcCCC-HHHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCCCCHHHHHHHHcCCcCccHHHHHHHHHcCCCC
Confidence 56778876443 45678899999999999986 35678999999775 589999988888 999999999999999999
Q ss_pred CCCcccccccChhhhhhhhhcccccCCCcccCCChh--HHHHHhhccCCCCCcchhhHHhhhcCCCCCCccCCCeEEEEc
Q 001082 735 QLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLA--DIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFY 812 (1160)
Q Consensus 735 p~~p~~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~--~L~~ll~~~~~s~~~~~i~~l~~~~~~~~~~~lF~gc~~yl~ 812 (1160)
|.++|.+.. .. .... . ..++.. .+.....+-. ..+...-.......+|.|+.|||+
T Consensus 87 ~E~~ye~~~-~~-~~d~----~--------~~~~~~~~~l~~a~~r~R--------~~l~~~~~~g~~~~lF~g~~v~l~ 144 (235)
T 3al2_A 87 QEEDYEWGS-SS-ILDV----L--------TGINVQQRRLALAAMRWR--------KKIQQRQESGIVEGAFSGWKVILH 144 (235)
T ss_dssp CSGGGBTTS-HH-HHTT----C--------TTSCHHHHHHHHHHHHHH--------HHHHHHHTTTCCSSTTTTCEEEEE
T ss_pred ChhceeecC-cc-hhcc----c--------cCCChhhhHHHHHHHHHH--------HHHHhcccccccCCCCCCcEEEEe
Confidence 987753321 10 0000 0 001111 1111000000 000000000001368999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-----CceEEEEecCCC-c-ccchhhhHHHHHHHhhhhccCCc
Q 001082 813 HSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-----NATHVVVLSVLG-Y-DVNFNSLTESFTAREKHLLWNKK 885 (1160)
Q Consensus 813 ~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-----~vTHVVV~~~~~-~-~~~~~~l~~~l~~~~~~~~~~~~ 885 (1160)
... ...+.++++|+++||+|..... +.||++|....- . .... .+++ + ....
T Consensus 145 ~~~------------~~~~~l~~ii~agGg~vl~~~~~~~~~~~t~~~vd~~~~~~~~~~~-~~~~-~--------~~~~ 202 (235)
T 3al2_A 145 VDQ------------SREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDLNKLKPDDSGV-NIAE-A--------AAQN 202 (235)
T ss_dssp CCH------------HHHHHHHHHHHHTTCEECSSCCGGGGGGCSEEEECC--------CC-CHHH-H--------HHTT
T ss_pred cCC------------CcHHHHHHHHHcCCcEEecCCCCCccccCceEEEecccCCccchhH-HHHH-H--------HHcC
Confidence 731 1246789999999999987643 479998863210 0 0001 1111 1 1234
Q ss_pred cEEeccchHHHHHHcCCccCCCCCCCCC
Q 001082 886 LHVVRSQWLEDCLAKEQKSEEYEYSLKP 913 (1160)
Q Consensus 886 ~~VVs~~Wl~~ci~~~~~v~E~~Y~v~~ 913 (1160)
+.||+.+||.+|+-.....+.+.|.+..
T Consensus 203 i~~v~~ewlld~i~~~~~~~~~~y~l~~ 230 (235)
T 3al2_A 203 VYCLRTEYIADYLMQESPPHVENYCLPE 230 (235)
T ss_dssp CEEEETHHHHHHHHCSSCCCHHHHBCGG
T ss_pred CcEEcHHHHHHHHhcCCCCChhheEccc
Confidence 8999999999999999999999997764
No 27
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=99.47 E-value=2.4e-13 Score=146.44 Aligned_cols=191 Identities=16% Similarity=0.231 Sum_probs=129.8
Q ss_pred cccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecC-CChhhHhhhcCC-CeeecchHHHHHhcCccC
Q 001082 657 IFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADN-KGLKYEAAKRRG-DVIHYSWVLDCCSQKKLL 734 (1160)
Q Consensus 657 lF~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia~~~-~~~K~~~a~~~~-~VV~p~WV~dCi~~~~lL 734 (1160)
.+.|+.||+.+.. ...++++.++|..+||+++.+. ..+||+|+... .+.||..++..+ +||+|+||.+|+++|+.+
T Consensus 13 ~~~~~~i~~SG~~-~~~~~~l~~~i~~lGg~v~~~~-~~~THLI~~~~~rT~K~l~A~~~g~~IVs~~Wl~~c~~~~~~l 90 (219)
T 3sqd_A 13 PELTPFVLFTGFE-PVQVQQYIKKLYILGGEVAESA-QKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQKFI 90 (219)
T ss_dssp GGGCCEEEECSCC-HHHHHHHHHHHHHTTCEECSSG-GGCSEEECSSCCCCHHHHHHTTTCSEEECHHHHHHHHHHTSCC
T ss_pred CCCCeEEEEeCCC-hHHHHHHHHHHHHCCCEEeCCC-CCceEEEECCCCCCHHHHHHHHcCCCEecHHHHHHHHHcCCCC
Confidence 5678889986543 4456789999999999998876 57999998653 678999999888 999999999999999999
Q ss_pred CCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhhHHhhhcCCCCCCccCCCeEEEEccC
Q 001082 735 QLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHS 814 (1160)
Q Consensus 735 p~~p~~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~~~s~~~~~i~~l~~~~~~~~~~~lF~gc~~yl~~~ 814 (1160)
|.++| .+.... . + ..||-+ +...+.+ - ....||.|+.||+.+.
T Consensus 91 ~e~~y-~l~d~~-~-e------~~~~~~---------l~~~l~r------------a-------~~~~LF~G~~f~it~~ 133 (219)
T 3sqd_A 91 DEQNY-ILRDAE-A-E------VLFSFS---------LEESLKR------------A-------HVSPLFKAKYFYITPG 133 (219)
T ss_dssp CSGGG-BCCCHH-H-H------HHTTCC---------HHHHHHH------------H-------HHSCTTTTEEEEECTT
T ss_pred ChHhc-cCCCch-h-h------hhcCCC---------hHHHhhh------------h-------ccccccCCcEEEEeCC
Confidence 98875 332211 0 0 011111 1111110 0 0235899999999985
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCCC-------------ceEEEEecCCCcccchhhhHHHHHHHhhhhc
Q 001082 815 TEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN-------------ATHVVVLSVLGYDVNFNSLTESFTAREKHLL 881 (1160)
Q Consensus 815 ~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~-------------vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~~ 881 (1160)
.. +. .+.+..+|+.+||++...+.. ...||+... .+....+...
T Consensus 134 ~~---~~--------~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~~~~~~ivis~~----~d~~~~~~~~-------- 190 (219)
T 3sqd_A 134 IC---PS--------LSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISCE----NDLHLCREYF-------- 190 (219)
T ss_dssp CS---SC--------HHHHHHHHHHTTCEEESSCCCHHHHHHHHHCTTSCEEEEEECG----GGGGGGHHHH--------
T ss_pred CC---CC--------HHHHHHHHHHCCCEEECCCCchHHhhhhhcccCCCCEEEEecc----cHHHHHHHHH--------
Confidence 32 22 357899999999999998753 234444332 1222223221
Q ss_pred cCCccEEeccchHHHHHHcCCccCCCCCCC
Q 001082 882 WNKKLHVVRSQWLEDCLAKEQKSEEYEYSL 911 (1160)
Q Consensus 882 ~~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~v 911 (1160)
...+.|++.+||..||-.+. ++-+.|.+
T Consensus 191 -~~~~~v~s~E~il~~Il~q~-ld~~~~~~ 218 (219)
T 3sqd_A 191 -ARGIDVHNAEFVLTGVLTQT-LDYESYKF 218 (219)
T ss_dssp -HTTCCCEETHHHHHHHHHTC-CCTTTSBC
T ss_pred -HCCCcEEeHHHHHHHHHhee-ecchhccc
Confidence 13568999999999999665 46666654
No 28
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.45 E-value=1.6e-13 Score=136.25 Aligned_cols=93 Identities=28% Similarity=0.392 Sum_probs=73.1
Q ss_pred CCCCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHH
Q 001082 798 QDKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAR 876 (1160)
Q Consensus 798 ~~~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~ 876 (1160)
..+..+|+||+|||+|+.. ...+.|.++|+.+||++++.++ .|||||+.... .. +++.+..
T Consensus 35 ~~~~~lF~g~~i~i~G~~~-----------~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~~---~~---~~~~~~~- 96 (132)
T 1wf6_A 35 QAPEDLLDGCRIYLCGFSG-----------RKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYD---DE---LKQFWNK- 96 (132)
T ss_dssp CCCTTTTTTCEEEEESCCS-----------HHHHHHHHHHHHTTCEEESSCCSSCCEEEESSCC---SH---HHHHHHH-
T ss_pred cccccccCCEEEEEECCCh-----------HHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCch---HH---HHHHHHh-
Confidence 4567899999999999852 2467899999999999999997 69999997531 12 2222211
Q ss_pred hhhhccCCccEEeccchHHHHHHcCCccCCCCCCCCC
Q 001082 877 EKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKP 913 (1160)
Q Consensus 877 ~~~~~~~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~v~~ 913 (1160)
....++||+++||++|+++++++||+.|.+..
T Consensus 97 -----~~~~~~iV~~~Wv~dsi~~~~ll~e~~Y~~~~ 128 (132)
T 1wf6_A 97 -----SAHRPHVVGAKWLLECFSKGYMLSEEPYIHSG 128 (132)
T ss_dssp -----SCCCCCEEEHHHHHHHHHHSSCCCSGGGBCCC
T ss_pred -----hCCCCeEechHHHHHHHHcCCcCCHhhccCCC
Confidence 13568999999999999999999999997654
No 29
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=4.2e-13 Score=124.33 Aligned_cols=84 Identities=29% Similarity=0.397 Sum_probs=69.6
Q ss_pred CCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCC--CCceEEEEecCCChhhHhhhcCC-CeeecchHHHHHhc
Q 001082 654 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLN--NSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQ 730 (1160)
Q Consensus 654 ~s~lF~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~~--~s~Th~Ia~~~~~~K~~~a~~~~-~VV~p~WV~dCi~~ 730 (1160)
.+.+|+|+.|||.+ ....++++|+++|..|||+++.+++ ..+||+|+....+.|+..+ .+ +||+|+||+||+++
T Consensus 4 ~~~~f~g~~~~i~g-~~~~~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~~K~~~~--~~~~iV~~~Wi~dci~~ 80 (92)
T 4id3_A 4 SSKIFKNCVIYING-YTKPGRLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPLKKRIEF--ANYKVVSPDWIVDSVKE 80 (92)
T ss_dssp --CTTTTCEEEECS-CCSSCHHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCHHHHHHT--TTSCEECTHHHHHHHHH
T ss_pred cccccCCEEEEEeC-CCCcCHHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCHHHHHHc--CCCCEEcccHHHHHHHc
Confidence 46799999999864 3345789999999999999999987 7899999987766665443 34 99999999999999
Q ss_pred CccCCCCccc
Q 001082 731 KKLLQLQPKY 740 (1160)
Q Consensus 731 ~~lLp~~p~~ 740 (1160)
++++|.++|.
T Consensus 81 ~~~l~e~~Y~ 90 (92)
T 4id3_A 81 ARLLPWQNYS 90 (92)
T ss_dssp TSCCCGGGGB
T ss_pred CCcCChhhcc
Confidence 9999999863
No 30
>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5}
Probab=99.35 E-value=7.1e-12 Score=145.23 Aligned_cols=156 Identities=18% Similarity=0.212 Sum_probs=109.5
Q ss_pred CCcEEEEEecceEEEEEEEeCCEEEEEeCCCCC--CCc-chhh-HHHHHHHhcccCceeeeeeEEEEeCCCCcccccccH
Q 001082 244 GKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLD--HSE-YGHA-MSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSN 319 (1160)
Q Consensus 244 ~~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d--~t~-~~p~-l~~~l~~~~~~~~~ILDGElv~~d~~~~~~~pF~~l 319 (1160)
...|++|+|+||.|+++|+.+|.++++||++.. +|. .+|+ +...+... ...++||||+++++. +|...
T Consensus 94 ~~~~vvEeKlDG~~v~l~y~~G~v~a~TRg~g~e~iT~n~i~~wip~~L~~~--~~~l~L~GEvv~~~~------~f~~~ 165 (389)
T 2vug_A 94 RGEFYVEEKVDGYNVRVVMYKGKMLGITRGGFICPFTTERIPDFVPQEFFKD--NPNLILVGEMAGPES------PYLVE 165 (389)
T ss_dssp SCEEEEEEECCSEEEEEEEETTEEEEEETTSCBCHHHHHHGGGTSCTHHHHH--CTTEEEEEEEESSSC------SSCSC
T ss_pred CCeEEEEEeecCcEEEEEEECCEEEEEeCCCCCCCCchhhhhHhHHHHHhcC--CCcEEEEEEEEecCC------hHHHh
Confidence 357999999999999999999999999999998 543 2344 22222211 567999999988652 44211
Q ss_pred HHHHHHhccCCCCCCccEEEEEEeeeeeCCcccccCCHHHHHHHHHHhhcCCCCcceeeccCCCCCccccCCCCCcccee
Q 001082 320 QEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLV 399 (1160)
Q Consensus 320 q~i~~~~r~~~~~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~~~~~v~~~~~~~~~~~ 399 (1160)
+......++.|++|||++.++.. -.|+.+|+++|+++--+....+. ...
T Consensus 166 ---------n~~np~r~l~F~vFDV~~~~~g~--~~s~~er~~~L~~lG~~~vp~~~--------------------~~~ 214 (389)
T 2vug_A 166 ---------GPPYVKEDIQFFLFDVQEIKTGR--SLPVEERLKIAEEYGINHVEVFG--------------------KYT 214 (389)
T ss_dssp ---------CCTTCCSSCEEEEEEEEETTTCC--BCCHHHHHHHHHHHTCCBCCEEE--------------------EEE
T ss_pred ---------cccCcccCCEEEEEEeeccCCCC--cCCHHHHHHHHHHcCCCCCCeEE--------------------EEc
Confidence 11111234899999998876332 27899999999998433221110 112
Q ss_pred cCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEcccc
Q 001082 400 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEY 446 (1160)
Q Consensus 400 ~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKlKpey 446 (1160)
..+.+++.++++.+...+.||||+|..+ +. .|+|++..+
T Consensus 215 ~~~~eel~~~i~~~~~~~~EGvViK~~d-------~~-~~lkyt~~~ 253 (389)
T 2vug_A 215 KDDVDELYQLIERLSKEGREGIIMKSPD-------MK-KIVKYVTPY 253 (389)
T ss_dssp GGGHHHHHHHHHHHHHTTCCEEEEECTT-------SC-CEEEEECHH
T ss_pred CCCHHHHHHHHHHhcCCCCCeEEEEECC-------hh-hhcCceecC
Confidence 2367899999999999999999999876 33 688887765
No 31
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.34 E-value=1.7e-12 Score=124.64 Aligned_cols=91 Identities=20% Similarity=0.264 Sum_probs=73.5
Q ss_pred CCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhh
Q 001082 800 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREK 878 (1160)
Q Consensus 800 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~ 878 (1160)
+..+|.||+|||.||.. .++..|+..|..+||++...++ +|||+|+....+. .++.
T Consensus 18 ~~p~F~g~~Ic~sGf~~-----------~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~~--K~~~---------- 74 (112)
T 3l46_A 18 GVPPFQDCILSFLGFSD-----------EEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVK--DLPF---------- 74 (112)
T ss_dssp CCCTTTTCEECEESCCH-----------HHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTBS--SCSS----------
T ss_pred CCCccCCeEEEEeCCCH-----------HHHHHHHHHHHHcCCEECcccCCCceEEEecCCchh--hHHH----------
Confidence 45689999999999862 2467899999999999999998 5999999875432 1211
Q ss_pred hhccCCccEEeccchHHHHHHcCCccCCCCCCCCCCC
Q 001082 879 HLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTG 915 (1160)
Q Consensus 879 ~~~~~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~v~~~~ 915 (1160)
...+.++||+++||++|++.|.+++|..|.+..+.
T Consensus 75 --A~~~~i~IVs~eWl~dsi~~g~~ldE~~Y~~~~~~ 109 (112)
T 3l46_A 75 --EPSKKLYVVKQEWFWGSIQMDARAGETMYLYEKAN 109 (112)
T ss_dssp --CCCSSCEEEEHHHHHHHHHHTSCCCGGGSBCCC--
T ss_pred --HHHCCeeEecHHHHHHHHHcCCccChhhceeccCC
Confidence 12478999999999999999999999999996653
No 32
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.4e-12 Score=129.07 Aligned_cols=91 Identities=20% Similarity=0.289 Sum_probs=79.9
Q ss_pred CCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhcCC-CeeecchHHHHHhcCc
Q 001082 654 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKK 732 (1160)
Q Consensus 654 ~s~lF~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia~~~~~~K~~~a~~~~-~VV~p~WV~dCi~~~~ 732 (1160)
.+.+|.|+.|||.+.. ..++.+|+++|..|||++..+++..+||+|+....+.||..|..++ +||+++||.+|+++++
T Consensus 19 ~~~~f~g~~i~itG~~-~~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~~K~~~A~~~gi~IV~~~Wl~d~~~~~~ 97 (129)
T 2d8m_A 19 LGKILQGVVVVLSGFQ-NPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCHRMRR 97 (129)
T ss_dssp HTTTSTTEEEEEESCC-TTHHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSCHHHHHHHHHTCEEEETHHHHHHHHTTS
T ss_pred ccccCCCeEEEEeCCC-cHHHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCChHHHHHHHCCCcEecHHHHHHHHHhCC
Confidence 4568999999987544 6689999999999999999999888999999998899999998887 9999999999999999
Q ss_pred cCCCCcccccccCh
Q 001082 733 LLQLQPKYYLHLSD 746 (1160)
Q Consensus 733 lLp~~p~~~l~~s~ 746 (1160)
++|+.+| ++...+
T Consensus 98 ~l~e~~Y-~l~~~~ 110 (129)
T 2d8m_A 98 RLPSQRY-LMAGPG 110 (129)
T ss_dssp CCCGGGG-BCSSSS
T ss_pred cCChHhc-ccCCCC
Confidence 9999875 444433
No 33
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.32 E-value=2.3e-12 Score=123.63 Aligned_cols=90 Identities=19% Similarity=0.266 Sum_probs=72.4
Q ss_pred CCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhh
Q 001082 800 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREK 878 (1160)
Q Consensus 800 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~ 878 (1160)
+..+|.||+||+.+|.. .++..|...|+.+||+++..++ +|||||+...... .++.
T Consensus 9 ~~~~F~g~~i~~sg~~~-----------~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~~~--K~~~---------- 65 (109)
T 2cou_A 9 KVPPFQDCILSFLGFSD-----------EEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTVK--DLPF---------- 65 (109)
T ss_dssp CCCTTTTCBEEEESSCH-----------HHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTTCS--SCSS----------
T ss_pred cCCcCCCeEEEecCCCH-----------HHHHHHHHHHHHcCCEEecccCCCccEEEEeCCccH--HHHH----------
Confidence 56789999999999862 2367889999999999999887 5999999864322 1221
Q ss_pred hhccCCccEEeccchHHHHHHcCCccCCCCCCCCCC
Q 001082 879 HLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPT 914 (1160)
Q Consensus 879 ~~~~~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~v~~~ 914 (1160)
.....++||+++||++|++.|++++|++|.+...
T Consensus 66 --a~~~~i~IV~~~Wl~dsi~~g~~ldE~~Y~~~~~ 99 (109)
T 2cou_A 66 --EPSKKLFVVKQEWFWGSIQMDARAGETMYLYEKA 99 (109)
T ss_dssp --CCCTTSEEECHHHHHHHHHTTSCCCGGGTBCCCC
T ss_pred --HHHCCCeEecHHHHHHHHHcCCcCChhccCCCCC
Confidence 1246789999999999999999999999988653
No 34
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.31 E-value=4.2e-12 Score=120.11 Aligned_cols=93 Identities=20% Similarity=0.342 Sum_probs=74.0
Q ss_pred CccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhhh
Q 001082 801 WSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKH 879 (1160)
Q Consensus 801 ~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~ 879 (1160)
..||+||+|||++..+ .. .+..|.++|.++||++.+.++ +|||||+..+.+. .++.++
T Consensus 5 pd~F~g~~f~l~~~~p--~~--------~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~~d~--~~~~a~--------- 63 (104)
T 3pc6_A 5 PDFFEGKHFFLYGEFP--GD--------ERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDP--NFEEAL--------- 63 (104)
T ss_dssp CCTTTTCEEEEESCCS--TT--------HHHHHHHHHHHTTCEECSSCCTTCCEEEESSCCCH--HHHHHH---------
T ss_pred chhhCCeEEEEcCCCc--HH--------HHHHHHHHHHHcCCEEEcccCCCceEEEeCCCCCh--hHHHHh---------
Confidence 3599999999999753 12 356889999999999999987 5999999875422 222211
Q ss_pred hccCCccEEeccchHHHHHHcCCccCCCCCCCCCCC
Q 001082 880 LLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTG 915 (1160)
Q Consensus 880 ~~~~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~v~~~~ 915 (1160)
..+....+|+++||++|++++++||+++|.+.+..
T Consensus 64 -~~~p~~~~V~P~WI~~Ci~~~klvp~~~y~~~~~~ 98 (104)
T 3pc6_A 64 -MENPSLAFVRPRWIYSCNEKQKLLPHQLYGVVPQA 98 (104)
T ss_dssp -TTCTTCEEECHHHHHHHHHHTSCCCGGGGBCCCCG
T ss_pred -hhCCCCeEEccHHHHHHHhcCccCCcccceecchh
Confidence 13567899999999999999999999999988764
No 35
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.30 E-value=2e-12 Score=123.64 Aligned_cols=89 Identities=18% Similarity=0.352 Sum_probs=75.3
Q ss_pred cCCCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEE---ecCCChhhHhhhcCC-CeeecchHHHH
Q 001082 652 KGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVA---ADNKGLKYEAAKRRG-DVIHYSWVLDC 727 (1160)
Q Consensus 652 ~~~s~lF~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia---~~~~~~K~~~a~~~~-~VV~p~WV~dC 727 (1160)
...+.+|.|+.|||.+... .++.+|+++|.++||++...++..+||+|+ ....+.||+.|...+ +||+++||.+|
T Consensus 10 ~~~~~~l~g~~i~isg~~~-~~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~~Wl~~c 88 (107)
T 3l3e_A 10 EEAPKPLHKVVVCVSKKLS-KKQSELNGIAASLGADYRRSFDETVTHFIYQGRPNDTNREYKSVKERGVHIVSEHWLLDC 88 (107)
T ss_dssp ----CTTTTCEEEECGGGG-GGHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTCCCHHHHHHHHTTCEEECHHHHHHH
T ss_pred ccccCCCCCeEEEEeCCCh-HhHHHHHHHHHHcCCEEeccccCCceEEEecCCCCCCCHHHHHHHHCCCeEecHHHHHHH
Confidence 3456799999999875443 689999999999999999999888999999 344578999999888 99999999999
Q ss_pred HhcCccCCCCcccc
Q 001082 728 CSQKKLLQLQPKYY 741 (1160)
Q Consensus 728 i~~~~lLp~~p~~~ 741 (1160)
+++++.+|.++|.+
T Consensus 89 ~~~~~~l~e~~Y~~ 102 (107)
T 3l3e_A 89 AQECKHLPESLYPH 102 (107)
T ss_dssp HHHTSCCCGGGCCT
T ss_pred HHhCCCCchhhCCC
Confidence 99999999887644
No 36
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.28 E-value=7.2e-12 Score=115.95 Aligned_cols=86 Identities=27% Similarity=0.389 Sum_probs=67.4
Q ss_pred CCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC---CceEEEEecCCCcccchhhhHHHHHHH
Q 001082 800 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA---NATHVVVLSVLGYDVNFNSLTESFTAR 876 (1160)
Q Consensus 800 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls---~vTHVVV~~~~~~~~~~~~l~~~l~~~ 876 (1160)
+..+|+||+|||.++.. ++ +..|+.+|..+||+++..++ +|||||+....+ ..++
T Consensus 4 ~~~~f~g~~~~i~g~~~---~~--------~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~-----~K~~------ 61 (92)
T 4id3_A 4 SSKIFKNCVIYINGYTK---PG--------RLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPL-----KKRI------ 61 (92)
T ss_dssp --CTTTTCEEEECSCCS---SC--------HHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCH-----HHHH------
T ss_pred cccccCCEEEEEeCCCC---cC--------HHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCH-----HHHH------
Confidence 45689999999999753 12 35788999999999999997 599999976431 1111
Q ss_pred hhhhccCCccEEeccchHHHHHHcCCccCCCCCCCC
Q 001082 877 EKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLK 912 (1160)
Q Consensus 877 ~~~~~~~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~v~ 912 (1160)
....++||+++||++|+++++++||++|.+.
T Consensus 62 -----~~~~~~iV~~~Wi~dci~~~~~l~e~~Y~l~ 92 (92)
T 4id3_A 62 -----EFANYKVVSPDWIVDSVKEARLLPWQNYSLT 92 (92)
T ss_dssp -----HTTTSCEECTHHHHHHHHHTSCCCGGGGBCC
T ss_pred -----HcCCCCEEcccHHHHHHHcCCcCChhhcccC
Confidence 1246899999999999999999999999863
No 37
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.27 E-value=2.2e-12 Score=123.88 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=75.5
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhcCC-CeeecchHHHHHhcCcc
Q 001082 655 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKKL 733 (1160)
Q Consensus 655 s~lF~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia~~~~~~K~~~a~~~~-~VV~p~WV~dCi~~~~l 733 (1160)
..+|+||.||+.+. ....+.+|+++|.+|||+|...++..+||+|+....+.||+.+.+++ +||+++||.||+++|..
T Consensus 19 ~p~F~g~~Ic~sGf-~~~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~~K~~~A~~~~i~IVs~eWl~dsi~~g~~ 97 (112)
T 3l46_A 19 VPPFQDCILSFLGF-SDEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVKDLPFEPSKKLYVVKQEWFWGSIQMDAR 97 (112)
T ss_dssp CCTTTTCEECEESC-CHHHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTBSSCSSCCCSSCEEEEHHHHHHHHHHTSC
T ss_pred CCccCCeEEEEeCC-CHHHHHHHHHHHHHcCCEECcccCCCceEEEecCCchhhHHHHHHCCeeEecHHHHHHHHHcCCc
Confidence 45999999999754 45678999999999999999999889999999888888999998888 99999999999999999
Q ss_pred CCCCcc
Q 001082 734 LQLQPK 739 (1160)
Q Consensus 734 Lp~~p~ 739 (1160)
++...|
T Consensus 98 ldE~~Y 103 (112)
T 3l46_A 98 AGETMY 103 (112)
T ss_dssp CCGGGS
T ss_pred cChhhc
Confidence 997765
No 38
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=5.9e-12 Score=118.55 Aligned_cols=81 Identities=17% Similarity=0.343 Sum_probs=63.8
Q ss_pred CCCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecC-----------CCCceEEEEecCCChhhHhhhcCCCeeec
Q 001082 653 GETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNL-----------NNSVTHCVAADNKGLKYEAAKRRGDVIHY 721 (1160)
Q Consensus 653 ~~s~lF~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~-----------~~s~Th~Ia~~~~~~K~~~a~~~~~VV~p 721 (1160)
+.++||+|+.|||.. ..+++.|+.+|+.|||+++.+. ...+||+|+.. .+.+... ...++|+|
T Consensus 8 ~~~~LF~g~~F~i~~---e~p~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~dr-p~~~~~~--~~r~~VqP 81 (100)
T 2ep8_A 8 KHKKLFEGLKFFLNR---EVPREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDR-PGQQTSV--IGRCYVQP 81 (100)
T ss_dssp CSCCTTSSCEEECCS---SSCHHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSC-TTTSCCB--TTBEEECT
T ss_pred chHHHcCCcEEEEec---CCCHHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecc-cchhhhc--CCCeEEcc
Confidence 457899999999854 3578999999999999999873 34689998643 3332111 11299999
Q ss_pred chHHHHHhcCccCCCCcc
Q 001082 722 SWVLDCCSQKKLLQLQPK 739 (1160)
Q Consensus 722 ~WV~dCi~~~~lLp~~p~ 739 (1160)
+||+||++++.+||+++|
T Consensus 82 qWV~Dcin~~~lLp~~~Y 99 (100)
T 2ep8_A 82 QWVFDSVNARLLLPVAEY 99 (100)
T ss_dssp HHHHHHHHHTSCCCTTTC
T ss_pred hHHHHHHhcCCcCChhhc
Confidence 999999999999999985
No 39
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=99.26 E-value=8.3e-12 Score=119.03 Aligned_cols=95 Identities=13% Similarity=0.224 Sum_probs=72.2
Q ss_pred CCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhh
Q 001082 800 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREK 878 (1160)
Q Consensus 800 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~ 878 (1160)
..++|+||++|++.+.....++ ..+.+...++++||++++.++ ++||||+.+..+. .++ ...
T Consensus 4 ~~p~f~g~vvyvd~~~~~g~~~-------~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~~~--~~~---~A~----- 66 (107)
T 3pa6_A 4 AAPILKDVVAYVEVWSSNGTEN-------YSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGYQS--TWD---KAQ----- 66 (107)
T ss_dssp CCCTTTTCEEEEEEBCTTSCCB-------CHHHHHHHHHHTTCEECSSCCTTCCEEEEESCCHH--HHH---HHH-----
T ss_pred cccccCCEEEEEeccCCCChhh-------HHHHHHHHHHHcCCEEecccCCCccEEEEeCCCCh--HHH---HHh-----
Confidence 3568999999999876311112 135788899999999999998 6999999864321 122 111
Q ss_pred hhccCCccEEeccchHHHHHHcCCccCCCCCCCCCCC
Q 001082 879 HLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTG 915 (1160)
Q Consensus 879 ~~~~~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~v~~~~ 915 (1160)
...++||+++||++|+++++++||+.|.+..+.
T Consensus 67 ----~~~i~iV~~~Wv~~C~~~~~~vdE~~Y~i~~~~ 99 (107)
T 3pa6_A 67 ----KRGVKLVSVLWVEKCRTAGAHIDESLFPAANMN 99 (107)
T ss_dssp ----HHTCEEECHHHHHHHHHHTSCCCGGGSBCCCTT
T ss_pred ----cCCCEEECHHHHHHHHHhCccCChhcccCCCCc
Confidence 135799999999999999999999999986654
No 40
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.25 E-value=9.9e-12 Score=117.56 Aligned_cols=87 Identities=20% Similarity=0.309 Sum_probs=74.6
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhcCC---CeeecchHHHHHhcC
Q 001082 655 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG---DVIHYSWVLDCCSQK 731 (1160)
Q Consensus 655 s~lF~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia~~~~~~K~~~a~~~~---~VV~p~WV~dCi~~~ 731 (1160)
-++|+|+.||+-+......+..|+++|..+||++....++.+||+|+....+.++..+.+.. .+|+|+||++|++++
T Consensus 5 pd~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~~d~~~~~a~~~~p~~~~V~P~WI~~Ci~~~ 84 (104)
T 3pc6_A 5 PDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEALMENPSLAFVRPRWIYSCNEKQ 84 (104)
T ss_dssp CCTTTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSSCCTTCCEEEESSCCCHHHHHHHTTCTTCEEECHHHHHHHHHHT
T ss_pred chhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEcccCCCceEEEeCCCCChhHHHHhhhCCCCeEEccHHHHHHHhcC
Confidence 46999999998765545678899999999999988877788999999888888888776543 899999999999999
Q ss_pred ccCCCCcccc
Q 001082 732 KLLQLQPKYY 741 (1160)
Q Consensus 732 ~lLp~~p~~~ 741 (1160)
+++|+++|-+
T Consensus 85 klvp~~~y~~ 94 (104)
T 3pc6_A 85 KLLPHQLYGV 94 (104)
T ss_dssp SCCCGGGGBC
T ss_pred ccCCccccee
Confidence 9999998643
No 41
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.24 E-value=2.6e-12 Score=123.25 Aligned_cols=88 Identities=15% Similarity=0.206 Sum_probs=77.5
Q ss_pred CCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhcCC-CeeecchHHHHHhcCc
Q 001082 654 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKK 732 (1160)
Q Consensus 654 ~s~lF~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia~~~~~~K~~~a~~~~-~VV~p~WV~dCi~~~~ 732 (1160)
...+|+|+.||+.+. ....+.+|.++|..|||++...++..+||+|+....+.||+.+.+++ +||+++||.||+++|+
T Consensus 9 ~~~~F~g~~i~~sg~-~~~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~~~K~~~a~~~~i~IV~~~Wl~dsi~~g~ 87 (109)
T 2cou_A 9 KVPPFQDCILSFLGF-SDEEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTVKDLPFEPSKKLFVVKQEWFWGSIQMDA 87 (109)
T ss_dssp CCCTTTTCBEEEESS-CHHHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTTCSSCSSCCCTTSEEECHHHHHHHHHTTS
T ss_pred cCCcCCCeEEEecCC-CHHHHHHHHHHHHHcCCEEecccCCCccEEEEeCCccHHHHHHHHCCCeEecHHHHHHHHHcCC
Confidence 356999999998754 34578999999999999999988889999999888888999998888 9999999999999999
Q ss_pred cCCCCccccc
Q 001082 733 LLQLQPKYYL 742 (1160)
Q Consensus 733 lLp~~p~~~l 742 (1160)
+++..+|.+-
T Consensus 88 ~ldE~~Y~~~ 97 (109)
T 2cou_A 88 RAGETMYLYE 97 (109)
T ss_dssp CCCGGGTBCC
T ss_pred cCChhccCCC
Confidence 9998876443
No 42
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=2.5e-11 Score=117.31 Aligned_cols=96 Identities=16% Similarity=0.163 Sum_probs=73.4
Q ss_pred CCCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHh
Q 001082 799 DKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTARE 877 (1160)
Q Consensus 799 ~~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~ 877 (1160)
.+..+|+||++||..+.. ....++.+.++++++||+|++.++ .|||||+.+. +..++.+++..
T Consensus 16 ~p~~~F~g~~iy~v~~~~---------g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve~~-----~~~e~~~~l~~-- 79 (120)
T 2coe_A 16 PQDIKFQDLVVFILEKKM---------GTTRRALLMELARRKGFRVENELSDSVTHIVAENN-----SGSDVLEWLQA-- 79 (120)
T ss_dssp SSCCSCTTCEEEEECTTT---------CHHHHHHHHHHHHHHTCEECSSCCTTCCEEEESSC-----CHHHHHHHHHH--
T ss_pred CcccccCCeEEEEeeccc---------chHHHHHHHHHHHHcCCEEeeccCCCcCEEEecCC-----CHHHHHHHHhc--
Confidence 467899999999987652 234688999999999999999998 5999999632 23445555421
Q ss_pred hhhccCCccEEeccchHHHHHHcCCccCCCCCC
Q 001082 878 KHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYS 910 (1160)
Q Consensus 878 ~~~~~~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~ 910 (1160)
.++.....++||+..||++||++|++|+|+.|.
T Consensus 80 ~~l~~~~~~~lv~i~Wl~esmk~g~lv~ee~~~ 112 (120)
T 2coe_A 80 QKVQVSSQPELLDVSWLIECIGAGKPVEMTGKH 112 (120)
T ss_dssp CCCCCSSCCEEEEHHHHHHHHHTTSCCCCSSSS
T ss_pred cccccccccEEeecHHHHHHHHcCCccCcccce
Confidence 111223468999999999999999999997664
No 43
>3qwu_A DNA ligase; structural genomics, PSI-2, midwest center for structural GE MCSG; HET: DNA ADN; 2.35A {Aquifex aeolicus}
Probab=99.22 E-value=6.1e-11 Score=134.46 Aligned_cols=150 Identities=19% Similarity=0.211 Sum_probs=102.6
Q ss_pred HHhcCCCcEEEEEecceEEEEEEEeCCEEEEEeCCCCCC---CcchhhHHH-HHHHhcccCceeeeeeEEEEeCCCCccc
Q 001082 239 WRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDH---SEYGHAMSK-IIEQNVLVDRCILDGEMLVWDTSLNRFA 314 (1160)
Q Consensus 239 ~~~~~~~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~---t~~~p~l~~-~l~~~~~~~~~ILDGElv~~d~~~~~~~ 314 (1160)
++.....+|++|+|+||.++-+.+.+|++..+||+|..+ |..++.+.+ .+...+ ++++|||||++-+ .
T Consensus 67 i~~~f~~~~~veEKLDG~NVRi~~~dG~ilA~TRgG~icP~tT~r~~~~~~~~f~~~~--P~l~LdGEl~g~~------n 138 (370)
T 3qwu_A 67 LREQFEAPFWVEEKVDGYNTRIFKYGDNYYALSRGGFICPFTTDRLPDLIDLRILDEN--PDLVICAEVAGPE------N 138 (370)
T ss_dssp HHHHCSSCEEEEEECSSEEEEEEEETTEEEEECTTSCBCHHHHHHHHHHCCCHHHHHC--TTEEEEEEEECTT------C
T ss_pred hhhcCCCcEEEEEeeCCeEEEEEEECCEEEEEcCCCcccCcchhhhhhhcCchhhhcC--CCeEEEEEEEcCC------C
Confidence 333334689999999999998877778898999999886 333333322 222322 6999999998832 1
Q ss_pred ccccHHHHHHHhccCCCCCCccEEEEEEeeeeeCCcccccCCHHHHHHHHHHhhcCCCCcceeeccCCCCCccccCCCCC
Q 001082 315 EFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEP 394 (1160)
Q Consensus 315 pF~~lq~i~~~~r~~~~~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~~~~~v~~~~~~ 394 (1160)
||.. .........+.|+||||...++ ..-+|+.+|+++|+++-.+... ++.
T Consensus 139 py~~---------~s~~y~~~~i~F~VFDV~d~~~--~~~L~~~eR~~ll~~~~lp~V~---ii~--------------- 189 (370)
T 3qwu_A 139 PYIE---------ESPPYVKEDVQLFVFDFMKKNE--QGFLSQEEKMELIEKYNLPHVE---ILG--------------- 189 (370)
T ss_dssp SSCS---------CCCTTCCSSCEEEEEEEEETTC--CSCCCHHHHHHHHHHHTCCBCC---EEE---------------
T ss_pred Cccc---------cCCcccccCceEEEEeCccccC--CCcCCHHHHHHHHHHCCCCCcc---EEE---------------
Confidence 3320 0011112348999999997542 3457999999999988654321 110
Q ss_pred ccceecC--CHHHHHHHHHHHHHcCCceEEEecCC
Q 001082 395 CWSLVAH--NVDEVEKFFKETIENRDEGIVLKDLG 427 (1160)
Q Consensus 395 ~~~~~~~--~~~ei~~~~~~ai~~g~EGlVlK~~d 427 (1160)
..... +.+++.+++++..+.|.||||+|+++
T Consensus 190 --~~~~~~~~~~~l~~~l~~l~~~g~EGVVlK~~~ 222 (370)
T 3qwu_A 190 --RFTASEEGIKKIKEILKRFNEEGREGVVFKEDS 222 (370)
T ss_dssp --EECSSHHHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred --EeCCCCCCHHHHHHHHHHHHhCCCcEEEEecCc
Confidence 12334 57789999999999999999999975
No 44
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=99.17 E-value=5.4e-11 Score=128.04 Aligned_cols=193 Identities=13% Similarity=0.198 Sum_probs=120.0
Q ss_pred CeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecC-CChhhHhhhcCC-CeeecchHHHHHhcCccCCCC
Q 001082 660 DMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADN-KGLKYEAAKRRG-DVIHYSWVLDCCSQKKLLQLQ 737 (1160)
Q Consensus 660 G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia~~~-~~~K~~~a~~~~-~VV~p~WV~dCi~~~~lLp~~ 737 (1160)
+..+++.+..+. ++.++|..+||.++.+.. .+||+|+... .|.||..++..| +||+|+||.+|+++|+++|.+
T Consensus 8 ~~~v~fSG~~~~----~~~~~i~~lGg~v~~~~~-~~THlV~~~~~RT~K~l~Aia~g~~IVs~~Wl~~~~~~~~~l~e~ 82 (220)
T 3l41_A 8 RVYITFTGYDKK----PSIDNLKKLDMSITSNPS-KCTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLKTHEIVDEE 82 (220)
T ss_dssp CEEEEECSCSSC----CCCGGGGGGTEEECSCTT-TCSEEECSSCCCBHHHHHHGGGCCEEECHHHHHHHHHHTSCCCSG
T ss_pred eEEEEEeccCCC----CCcchHhhcceeeccCch-hhhhhhhhhHhhhcceeecCCCCCeEEEhHHHHhhhhhhhccccC
Confidence 445565433322 348899999999998876 5999998654 689999998888 999999999999999999988
Q ss_pred cccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhhHHhhhcCCCCCCccCCCeEEEEccCCCC
Q 001082 738 PKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEP 817 (1160)
Q Consensus 738 p~~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~~~s~~~~~i~~l~~~~~~~~~~~lF~gc~~yl~~~~~~ 817 (1160)
+| .+...... . .|| ++ +...+.+- +. ....||.|+.|||.....
T Consensus 83 ~y-~l~d~~~e-~-------~~~------~~---l~~~~~ra------------r~-----~~~~LF~G~~f~it~~~~- 126 (220)
T 3l41_A 83 PY-LLNDPEKE-L-------ELG------CT---LESALKRA------------RA-----QGPSLLEDYVVYLTSKTV- 126 (220)
T ss_dssp GG-BCCCHHHH-H-------HHT------SC---HHHHHHHH------------HH-----HCSCTTTTSEEEEETTSS-
T ss_pred cc-ccCCcHHH-h-------hcc------cc---HHHHHHHH------------Hh-----cCchhhhheeEEEecccc-
Confidence 75 33221100 0 011 01 11111100 00 124699999999987430
Q ss_pred CCChhHHHHHHHHHHHHHHHHhcCCEEEccCC--C--------ceEEEEecCCCcccchhhhHHHHHHHhhhhccCCccE
Q 001082 818 LSPDWEVLLGLALRRLKLEISFHGGKVCNNLA--N--------ATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLH 887 (1160)
Q Consensus 818 ~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls--~--------vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 887 (1160)
..+. .+.|..+|+.+||++....+ . -..||+.... +.... ..+.... .....++
T Consensus 127 ~~p~--------~~~l~~iI~~~GG~v~~~p~~~~~~~~~~~~~~~~vis~~~----d~~~~-~~f~~~~---~~~~~~~ 190 (220)
T 3l41_A 127 APEN--------VPAVISIVKSNGGVCSTLNVYNKRLARHLEDGNVVLITCNE----DSHIW-TNFLDNA---SQNKTIF 190 (220)
T ss_dssp CGGG--------HHHHHHHHHHTTCEEEEECSCCHHHHHHHHHCCEEEEECGG----GHHHH-TTTHHHH---TTCTTEE
T ss_pred CCCC--------CceEEEEEecCCcEechhhHHHHHHHHhcccCCEEEEEeCC----cchHH-HHhhccc---cccceEE
Confidence 0112 45789999999999998221 0 1244443321 22111 1111111 1246789
Q ss_pred EeccchHHHHHHcCCccCCCCC
Q 001082 888 VVRSQWLEDCLAKEQKSEEYEY 909 (1160)
Q Consensus 888 VVs~~Wl~~ci~~~~~v~E~~Y 909 (1160)
||+.+||..||-...+-=++.+
T Consensus 191 i~~~e~ll~~il~q~l~~~~~~ 212 (220)
T 3l41_A 191 LQNYDWLIKTVLRQEIDVNDRI 212 (220)
T ss_dssp EEEHHHHHHHHHHTCCCTTCCB
T ss_pred EechhHHHHHHHHHHcCcchHH
Confidence 9999999999987765544444
No 45
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.16 E-value=3.7e-11 Score=112.54 Aligned_cols=85 Identities=22% Similarity=0.416 Sum_probs=67.3
Q ss_pred CCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC--CceEEEEecCCCcccchhhhHHHHHHHh
Q 001082 800 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA--NATHVVVLSVLGYDVNFNSLTESFTARE 877 (1160)
Q Consensus 800 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls--~vTHVVV~~~~~~~~~~~~l~~~l~~~~ 877 (1160)
+..+|+||+||+.++.. .+ .+.|+.+|..+||++...++ .|||||+...... .+ ++
T Consensus 9 ~~~lF~g~~~~isg~~~---~~--------~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~~~--k~---~~------ 66 (97)
T 2ebw_A 9 SSTIFSGVAIYVNGYTD---PS--------AEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNA--KI---KE------ 66 (97)
T ss_dssp CCCTTTTCEEEECSSCS---SC--------HHHHHHHHHHTTCEECSSCCSSSCCEEECSCCCTT--HH---HH------
T ss_pred CCCCCCCeEEEEeCCCc---cc--------HHHHHHHHHHcCCEEeeecCCCCCEEEEecCCChH--HH---HH------
Confidence 45699999999999753 22 45889999999999988775 5999999764311 11 11
Q ss_pred hhhccCCccEEeccchHHHHHHcCCccCCCCCCC
Q 001082 878 KHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSL 911 (1160)
Q Consensus 878 ~~~~~~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~v 911 (1160)
...++||+++||.+|+++|+++|+++|.+
T Consensus 67 -----~~~~~iV~p~Wl~dci~~~~~l~~~~Y~l 95 (97)
T 2ebw_A 67 -----LKGEKVIRPEWIVESIKAGRLLSYIPYQL 95 (97)
T ss_dssp -----TSSSCCBCTHHHHHHHHHTSCCCSGGGBS
T ss_pred -----hcCCCEeChHHHHHHHHcCCccCchHcEe
Confidence 12679999999999999999999999976
No 46
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=99.16 E-value=1e-11 Score=118.41 Aligned_cols=98 Identities=16% Similarity=0.253 Sum_probs=71.7
Q ss_pred CCCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHh
Q 001082 799 DKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTARE 877 (1160)
Q Consensus 799 ~~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~ 877 (1160)
.+..+|+||+|||..... ... .++.....++.+||++++.++ +||||||.+.. +++++.+++..
T Consensus 7 ~~~~~F~g~~v~~~p~~~--~~~-------r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~----s~~~~l~~l~~-- 71 (106)
T 2jw5_A 7 EAEEWLSSLRAHVVRTGI--GRA-------RAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGM----DYERALRLLRL-- 71 (106)
T ss_dssp CGGGCGGGSCCCBCTTTC--CSS-------STTHHHHHHHHTTCCCCSTTCTTCCEEEECSSS----CHHHHHHHTTC--
T ss_pred cCcCEeCCeEEEEEecCC--chH-------HHHHHHHHHHHcCCEEeeccCCCccEEEEcCCC----CHHHHHHHHhh--
Confidence 467899999999975432 111 245667788999999999997 69999997432 34444443321
Q ss_pred hhhccCCccEEeccchHHHHHHcCCccCCCCCCCCC
Q 001082 878 KHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKP 913 (1160)
Q Consensus 878 ~~~~~~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~v~~ 913 (1160)
......++||+++|+++||+++++|+|+.|.+..
T Consensus 72 --~~l~~~~~iV~~~Wv~dci~~~~llde~~y~~~~ 105 (106)
T 2jw5_A 72 --PQLPPGAQLVKSAWLSLCLQERRLVDVAGFSIFI 105 (106)
T ss_dssp --SSCCSSCEEEEHHHHHHHHHTCSCCCGGGTBCSC
T ss_pred --cccCCCcEEecCchHHHHHhcCcccCcccccccC
Confidence 0112467999999999999999999999997754
No 47
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.15 E-value=1e-10 Score=116.11 Aligned_cols=98 Identities=22% Similarity=0.378 Sum_probs=75.7
Q ss_pred cccCccccccCCCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhc---CC-Ce
Q 001082 643 FLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKR---RG-DV 718 (1160)
Q Consensus 643 ~~~~~~s~~~~~s~lF~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia~~~~~~K~~~a~~---~~-~V 718 (1160)
+...|+.-......+|+||.|||.+ .....++.|+++|..|||+++..++..+||+|+.+. +.+++.+.. .+ .|
T Consensus 26 ~~~~d~~~~~~~~~lF~g~~i~i~G-~~~~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~-~~~~~~~~~~~~~~~~i 103 (132)
T 1wf6_A 26 LENLDVSAFQAPEDLLDGCRIYLCG-FSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDY-DDELKQFWNKSAHRPHV 103 (132)
T ss_dssp STTCCGGGCCCCTTTTTTCEEEEES-CCSHHHHHHHHHHHHTTCEEESSCCSSCCEEEESSC-CSHHHHHHHHSCCCCCE
T ss_pred hhhcCcccccccccccCCEEEEEEC-CChHHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCc-hHHHHHHHHhhCCCCeE
Confidence 3444444445567899999999874 345678899999999999999888888999998754 334443322 23 89
Q ss_pred eecchHHHHHhcCccCCCCccccc
Q 001082 719 IHYSWVLDCCSQKKLLQLQPKYYL 742 (1160)
Q Consensus 719 V~p~WV~dCi~~~~lLp~~p~~~l 742 (1160)
|+|+||.||+++|+++|.++|...
T Consensus 104 V~~~Wv~dsi~~~~ll~e~~Y~~~ 127 (132)
T 1wf6_A 104 VGAKWLLECFSKGYMLSEEPYIHS 127 (132)
T ss_dssp EEHHHHHHHHHHSSCCCSGGGBCC
T ss_pred echHHHHHHHHcCCcCCHhhccCC
Confidence 999999999999999999987443
No 48
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=1.5e-10 Score=114.45 Aligned_cols=90 Identities=16% Similarity=0.276 Sum_probs=72.1
Q ss_pred ccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhhhh
Q 001082 802 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKHL 880 (1160)
Q Consensus 802 ~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~ 880 (1160)
.+|.||+|||.++.. . .+..|..+|..+||+++..++ +|||||+....+. .+. +..
T Consensus 21 ~~f~g~~i~itG~~~---~--------~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~~--K~~---~A~------- 77 (129)
T 2d8m_A 21 KILQGVVVVLSGFQN---P--------FRSELRDKALELGAKYRPDWTRDSTHLICAFANTP--KYS---QVL------- 77 (129)
T ss_dssp TTSTTEEEEEESCCT---T--------HHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSCH--HHH---HHH-------
T ss_pred ccCCCeEEEEeCCCc---H--------HHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCCh--HHH---HHH-------
Confidence 479999999999752 1 256889999999999999998 5999999864321 222 111
Q ss_pred ccCCccEEeccchHHHHHHcCCccCCCCCCCCCCCC
Q 001082 881 LWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTGM 916 (1160)
Q Consensus 881 ~~~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~v~~~~~ 916 (1160)
...++||+++||.+|++.+++++|+.|.+..+..
T Consensus 78 --~~gi~IV~~~Wl~d~~~~~~~l~e~~Y~l~~~~~ 111 (129)
T 2d8m_A 78 --GLGGRIVRKEWVLDCHRMRRRLPSQRYLMAGPGS 111 (129)
T ss_dssp --HHTCEEEETHHHHHHHHTTSCCCGGGGBCSSSSC
T ss_pred --HCCCcEecHHHHHHHHHhCCcCChHhcccCCCCc
Confidence 1468999999999999999999999999887764
No 49
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.10 E-value=1.2e-10 Score=111.20 Aligned_cols=93 Identities=14% Similarity=0.155 Sum_probs=69.6
Q ss_pred CCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhh
Q 001082 800 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREK 878 (1160)
Q Consensus 800 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~ 878 (1160)
...+|.||+|||.|+.+ . .+..|+.+|..+||+++..++ +|||||+....+. .-..+++..
T Consensus 12 ~~~~l~g~~i~isg~~~---~--------~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~--~~~K~~~A~----- 73 (107)
T 3l3e_A 12 APKPLHKVVVCVSKKLS---K--------KQSELNGIAASLGADYRRSFDETVTHFIYQGRPND--TNREYKSVK----- 73 (107)
T ss_dssp --CTTTTCEEEECGGGG---G--------GHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTC--CCHHHHHHH-----
T ss_pred ccCCCCCeEEEEeCCCh---H--------hHHHHHHHHHHcCCEEeccccCCceEEEecCCCCC--CCHHHHHHH-----
Confidence 34689999999999753 1 256889999999999999998 5999999531111 111122211
Q ss_pred hhccCCccEEeccchHHHHHHcCCccCCCCCCCCCC
Q 001082 879 HLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPT 914 (1160)
Q Consensus 879 ~~~~~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~v~~~ 914 (1160)
...++||+++||++|++.++++||++|.+..+
T Consensus 74 ----~~gi~IV~~~Wl~~c~~~~~~l~e~~Y~~~~~ 105 (107)
T 3l3e_A 74 ----ERGVHIVSEHWLLDCAQECKHLPESLYPHTYN 105 (107)
T ss_dssp ----HTTCEEECHHHHHHHHHHTSCCCGGGCCTTCC
T ss_pred ----HCCCeEecHHHHHHHHHhCCCCchhhCCCCCC
Confidence 24689999999999999999999999987654
No 50
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.09 E-value=2e-10 Score=129.35 Aligned_cols=148 Identities=14% Similarity=0.218 Sum_probs=109.6
Q ss_pred HHHHHcCCE-EEec--------CC-CCceEEEEecCCChhhHhhhcCC-CeeecchHHHHHhcCccCCCCcccccccChh
Q 001082 679 KMVVENGGT-FSMN--------LN-NSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKKLLQLQPKYYLHLSDS 747 (1160)
Q Consensus 679 klI~~~GG~-iv~n--------~~-~s~Th~Ia~~~~~~K~~~a~~~~-~VV~p~WV~dCi~~~~lLp~~p~~~l~~s~~ 747 (1160)
+.|+++++. +++- .. +..+..|+.+-.+..|..+...+ +||.|+||.+|++.++.+|..|+.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~~~F~g~~f~~l~~~~~~iv~p~~v~~c~~~~~~lp~~~~P~y----- 102 (298)
T 3olc_X 28 ESIKEFQSEEYLQIITEEEALKIKENDRSLYICDPFSGVVFDHLKKLGCRIVGPQVVIFCMHHQRCVPRAEHPVY----- 102 (298)
T ss_dssp HHHHHHSCGGGEEEEEHHHHTTCCSCCSCEEECSSSCSHHHHHHHHHTCEEECHHHHHHHHHTTCCCCCCSSCBC-----
T ss_pred HHHHHhcCCcccEEecHHHHhhCCCCCCeEEEecCCCCHHHHHHHHCCCCEECHHHHHHHHHhCCcCCCCCCccc-----
Confidence 356777777 3331 11 12355666777888999998887 99999999999999999987653211
Q ss_pred hhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhhHHhhhcCCCCCCccCCCeEEEEccCCCCCCChhHHHHH
Q 001082 748 SKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVLLG 827 (1160)
Q Consensus 748 t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~~~s~~~~~i~~l~~~~~~~~~~~lF~gc~~yl~~~~~~~~~d~~~i~~ 827 (1160)
..+|.|++|++.|+.+
T Consensus 103 -----------------------------------------------------~~~l~g~~~~~tG~~~----------- 118 (298)
T 3olc_X 103 -----------------------------------------------------NMVMSDVTISCTSLEK----------- 118 (298)
T ss_dssp -----------------------------------------------------CCTTTTCEEEEESCCH-----------
T ss_pred -----------------------------------------------------ccccCCeEEEeCCCcH-----------
Confidence 2369999999999752
Q ss_pred HHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhhhhccCCccEEeccchHHHHHHcCCccCC
Q 001082 828 LALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEE 906 (1160)
Q Consensus 828 ~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~VVs~~Wl~~ci~~~~~v~E 906 (1160)
..+..+...|..+||+++.+++ ++||||+....+ ..+ +... ...+.||+++||.+|+..++.++.
T Consensus 119 ~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~~t--~Ky---~~A~---------~~gi~IV~~~Wl~~c~~~~~~~~~ 184 (298)
T 3olc_X 119 EKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGS--KKY---LVAA---------NLKKPILLPSWIKTLWEKSQEKKI 184 (298)
T ss_dssp HHHHHHHHHHHHTTCEECSSCCTTCCEEEESSSCS--HHH---HHHH---------HTTCCEECHHHHHHHHHHHHTTCC
T ss_pred HhHHHHHHHHHHCCCEEecCcCCCeeEEEEeCCCC--hHH---HHHH---------HCCCeEeeHHHHHHHHHcCCcCCc
Confidence 1367899999999999999998 699999986432 122 2111 245799999999999999998765
Q ss_pred CCC
Q 001082 907 YEY 909 (1160)
Q Consensus 907 ~~Y 909 (1160)
..|
T Consensus 185 ~~~ 187 (298)
T 3olc_X 185 TRY 187 (298)
T ss_dssp SSG
T ss_pred ccc
Confidence 544
No 51
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=1.3e-09 Score=102.62 Aligned_cols=80 Identities=20% Similarity=0.168 Sum_probs=62.6
Q ss_pred CCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccC-----------C-CceEEEEecCCCcccchh
Q 001082 800 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNL-----------A-NATHVVVLSVLGYDVNFN 867 (1160)
Q Consensus 800 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~l-----------s-~vTHVVV~~~~~~~~~~~ 867 (1160)
...||+||+||+....+ ++.|..+|+.+||+++.+. + .+||+|++.+. ..
T Consensus 9 ~~~LF~g~~F~i~~e~p-------------~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~-----~~ 70 (100)
T 2ep8_A 9 HKKLFEGLKFFLNREVP-------------REALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPG-----QQ 70 (100)
T ss_dssp SCCTTSSCEEECCSSSC-------------HHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTT-----TS
T ss_pred hHHHcCCcEEEEecCCC-------------HHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccc-----hh
Confidence 46799999999987432 4578889999999999862 3 59999997532 11
Q ss_pred hhHHHHHHHhhhhccCCccEEeccchHHHHHHcCCccCCCCCC
Q 001082 868 SLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYS 910 (1160)
Q Consensus 868 ~l~~~l~~~~~~~~~~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~ 910 (1160)
+ .....++|.+.||.||+++++++|+++|.
T Consensus 71 ---~----------~~~~r~~VqPqWV~Dcin~~~lLp~~~Y~ 100 (100)
T 2ep8_A 71 ---T----------SVIGRCYVQPQWVFDSVNARLLLPVAEYF 100 (100)
T ss_dssp ---C----------CBTTBEEECTHHHHHHHHHTSCCCTTTCC
T ss_pred ---h----------hcCCCeEEcchHHHHHHhcCCcCChhhcC
Confidence 0 02334999999999999999999999994
No 52
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=98.93 E-value=1.6e-09 Score=103.20 Aligned_cols=85 Identities=21% Similarity=0.343 Sum_probs=72.7
Q ss_pred CcccCeEEEEEcCC-CC--CChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhcCC-CeeecchHHHHHhcC
Q 001082 656 SIFSDMVFYFVNVP-PA--YSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQK 731 (1160)
Q Consensus 656 ~lF~G~~F~vv~~~-~~--~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia~~~~~~K~~~a~~~~-~VV~p~WV~dCi~~~ 731 (1160)
.+|+|+.+||-... .. ...+.+..++..+||+++..++..+||+|+.+..+.+|+.+.+++ +||++.||.+|++++
T Consensus 6 p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~~~~~~~A~~~~i~iV~~~Wv~~C~~~~ 85 (107)
T 3pa6_A 6 PILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGYQSTWDKAQKRGVKLVSVLWVEKCRTAG 85 (107)
T ss_dssp CTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCTTCCEEEEESCCHHHHHHHHHHTCEEECHHHHHHHHHHT
T ss_pred cccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCCCccEEEEeCCCChHHHHHhcCCCEEECHHHHHHHHHhC
Confidence 59999999984321 12 345789999999999999999989999999887777899888888 999999999999999
Q ss_pred ccCCCCccc
Q 001082 732 KLLQLQPKY 740 (1160)
Q Consensus 732 ~lLp~~p~~ 740 (1160)
+.++.++|.
T Consensus 86 ~~vdE~~Y~ 94 (107)
T 3pa6_A 86 AHIDESLFP 94 (107)
T ss_dssp SCCCGGGSB
T ss_pred ccCChhccc
Confidence 999988763
No 53
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=98.89 E-value=1.4e-09 Score=99.30 Aligned_cols=73 Identities=25% Similarity=0.384 Sum_probs=58.4
Q ss_pred CCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC--CceEEEEecCCCcccchhhhHHHHHHHh
Q 001082 800 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA--NATHVVVLSVLGYDVNFNSLTESFTARE 877 (1160)
Q Consensus 800 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls--~vTHVVV~~~~~~~~~~~~l~~~l~~~~ 877 (1160)
...+|.||+|||+...+ + ...|.++|.+|||+++.+.+ ++||||+....
T Consensus 13 LpdiFsg~~~~l~~~v~----~--------~~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~~~----------------- 63 (88)
T 3pc7_A 13 LLDIFTGVRLYLPPSTP----D--------FSRLRRYFVAFDGDLVQEFDMTSATHVLGSRDK----------------- 63 (88)
T ss_dssp CCCCSTTCEECCCTTST----T--------HHHHHHHHHHTTCEECCGGGGGGCSEEESCCTT-----------------
T ss_pred CChhhcCeEEEccCCcC----c--------hhhheeeeeecCCEEecccCCCcCeEEecCCCc-----------------
Confidence 34699999999987532 2 24788999999999988665 59999964310
Q ss_pred hhhccCCccEEeccchHHHHHHcCCccCC
Q 001082 878 KHLLWNKKLHVVRSQWLEDCLAKEQKSEE 906 (1160)
Q Consensus 878 ~~~~~~~~~~VVs~~Wl~~ci~~~~~v~E 906 (1160)
+....+|+++||++||+.|++||+
T Consensus 64 -----~~~~~~V~p~WI~dcI~k~~Ll~~ 87 (88)
T 3pc7_A 64 -----NPAAQQVSPEWIWACIRKRRLVAP 87 (88)
T ss_dssp -----CTTSEEECHHHHHHHHHHTSCCSC
T ss_pred -----CCCCcEEchHHHHHHHhCCcccCC
Confidence 345689999999999999999986
No 54
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=98.79 E-value=6.4e-09 Score=101.03 Aligned_cols=97 Identities=18% Similarity=0.072 Sum_probs=73.8
Q ss_pred CccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhhh
Q 001082 801 WSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKH 879 (1160)
Q Consensus 801 ~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~ 879 (1160)
...|.+|++||..... ....++.|.++++..||++.+.++ +|||||+.+. +..++.+|+.....+
T Consensus 8 ~~~F~~v~iyive~km---------G~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~-----s~~~~~~~L~~~~~~ 73 (133)
T 2dun_A 8 STRFPGVAIYLVEPRM---------GRSRRAFLTGLARSKGFRVLDACSSEATHVVMEET-----SAEEAVSWQERRMAA 73 (133)
T ss_dssp SCSEEEEEEEECHHHH---------CSHHHHHHHHHHHHHTEEECSSCCTTCCEEEESSC-----CHHHHHHHHHHHHHH
T ss_pred ccccCccEEEEecCCc---------CHHHHHHHHHHHHhcCCEeccccCCCceEEEecCC-----CHHHHHHHHHHhhcc
Confidence 3579999999998642 123578999999999999999999 5999999542 345566666322222
Q ss_pred hc-cCCccEEeccchHHHHHHcCCccCCCCCCC
Q 001082 880 LL-WNKKLHVVRSQWLEDCLAKEQKSEEYEYSL 911 (1160)
Q Consensus 880 ~~-~~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~v 911 (1160)
+. ....+++|...|+.+|+++|+.|+++.|.+
T Consensus 74 l~~~~~~~~lLdisWltecm~~g~pV~~e~~~~ 106 (133)
T 2dun_A 74 APPGCTPPALLDISWLTESLGAGQPVPVECRHR 106 (133)
T ss_dssp SCTTCCCCEEEEHHHHHHHHHHTSCCCCCTTTS
T ss_pred cCcCCCCcEEeccHHHHHHHhcCCcCCcccceE
Confidence 22 224589999999999999999999977753
No 55
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=98.77 E-value=3.1e-09 Score=96.92 Aligned_cols=73 Identities=19% Similarity=0.456 Sum_probs=57.7
Q ss_pred CCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCC-CceEEEEecCCChhhHhhhcCC-CeeecchHHHHHhcC
Q 001082 654 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNN-SVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQK 731 (1160)
Q Consensus 654 ~s~lF~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~~~-s~Th~Ia~~~~~~K~~~a~~~~-~VV~p~WV~dCi~~~ 731 (1160)
-.++|+|+.|++-.... ....|++.|.++||.++.+.+. .+||+|+... ...+ .+|+|+||.|||++|
T Consensus 13 LpdiFsg~~~~l~~~v~--~~~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~~--------~~~~~~~V~p~WI~dcI~k~ 82 (88)
T 3pc7_A 13 LLDIFTGVRLYLPPSTP--DFSRLRRYFVAFDGDLVQEFDMTSATHVLGSRD--------KNPAAQQVSPEWIWACIRKR 82 (88)
T ss_dssp CCCCSTTCEECCCTTST--THHHHHHHHHHTTCEECCGGGGGGCSEEESCCT--------TCTTSEEECHHHHHHHHHHT
T ss_pred CChhhcCeEEEccCCcC--chhhheeeeeecCCEEecccCCCcCeEEecCCC--------cCCCCcEEchHHHHHHHhCC
Confidence 35799999999854432 2369999999999999887653 6899995442 1223 899999999999999
Q ss_pred ccCCC
Q 001082 732 KLLQL 736 (1160)
Q Consensus 732 ~lLp~ 736 (1160)
++||.
T Consensus 83 ~Ll~~ 87 (88)
T 3pc7_A 83 RLVAP 87 (88)
T ss_dssp SCCSC
T ss_pred cccCC
Confidence 99985
No 56
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=98.75 E-value=1.1e-08 Score=118.06 Aligned_cols=86 Identities=20% Similarity=0.261 Sum_probs=76.4
Q ss_pred CCcccCeEEEEEcCCC---CCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhcC-C-CeeecchHHHHHh
Q 001082 655 TSIFSDMVFYFVNVPP---AYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRR-G-DVIHYSWVLDCCS 729 (1160)
Q Consensus 655 s~lF~G~~F~vv~~~~---~~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia~~~~~~K~~~a~~~-~-~VV~p~WV~dCi~ 729 (1160)
+.+|.|+.||+.+..+ ...+.++.++|..+||+++.+++..+||+|++...|.|++.|.++ + +||+|+||.+|+.
T Consensus 280 ~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~~t~K~~~A~~~~~I~IV~~~Wl~~c~~ 359 (372)
T 3ef0_A 280 QKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTESLS 359 (372)
T ss_dssp TTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSSCCSEEEECSCCCHHHHHHHHSSSCCEEEHHHHHHHHH
T ss_pred hhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCCCceEEEEcCCCchHHHHHHhcCCCEEEcHHHHHHHHH
Confidence 4799999999976542 245689999999999999999998999999999899999999988 5 9999999999999
Q ss_pred cCccCCCCccc
Q 001082 730 QKKLLQLQPKY 740 (1160)
Q Consensus 730 ~~~lLp~~p~~ 740 (1160)
+++.+|.++|-
T Consensus 360 ~~~~vdE~~Y~ 370 (372)
T 3ef0_A 360 QWKRLPESDYL 370 (372)
T ss_dssp TTSCCCGGGGB
T ss_pred hCCcCChhhce
Confidence 99999988763
No 57
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=98.72 E-value=1e-08 Score=119.89 Aligned_cols=87 Identities=21% Similarity=0.286 Sum_probs=77.1
Q ss_pred CCCcccCeEEEEEcCCC---CCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhcCC--CeeecchHHHHH
Q 001082 654 ETSIFSDMVFYFVNVPP---AYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG--DVIHYSWVLDCC 728 (1160)
Q Consensus 654 ~s~lF~G~~F~vv~~~~---~~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia~~~~~~K~~~a~~~~--~VV~p~WV~dCi 728 (1160)
.+.+|.||.||+.+..+ ..++.+|..+|..+||++...++..+||+|++...|.||+.|.+++ +||+++||.+|+
T Consensus 349 k~~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~~~~t~K~~~A~~~g~IkIVs~~WL~dcl 428 (442)
T 3ef1_A 349 KQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTESL 428 (442)
T ss_dssp HHTTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSSSCCSEEEECSCCCHHHHHHHHHSSSEEEEHHHHHHHH
T ss_pred hhcccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCCCCCceEEEeCCCCCHHHHHHHhcCCCEEEeHHHHHHHH
Confidence 46799999999976432 2467899999999999999999989999999999999999999884 899999999999
Q ss_pred hcCccCCCCccc
Q 001082 729 SQKKLLQLQPKY 740 (1160)
Q Consensus 729 ~~~~lLp~~p~~ 740 (1160)
.+++.+|..+|-
T Consensus 429 ~~~krldE~~Yl 440 (442)
T 3ef1_A 429 SQWKRLPESDYL 440 (442)
T ss_dssp HHTSCCCGGGTB
T ss_pred HcCCcCChhccc
Confidence 999999988763
No 58
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=98.61 E-value=4e-08 Score=113.41 Aligned_cols=90 Identities=17% Similarity=0.260 Sum_probs=68.9
Q ss_pred ccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhhhh
Q 001082 802 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKHL 880 (1160)
Q Consensus 802 ~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~ 880 (1160)
.+|.||+|+|+|+.+..... +...+...+..+||+++..++ +|||||+....+. .+ +.+.
T Consensus 281 ~~L~G~~ivfSG~~~~~~~~-------~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~~t~--K~---~~A~------- 341 (372)
T 3ef0_A 281 KVLKGCRLLFSGVIPLGVDV-------LSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTE--KV---KKAV------- 341 (372)
T ss_dssp TTSTTCEEEEESSSCTTSCT-------TTSHHHHHHHHTTCEEESSSSSCCSEEEECSCCCH--HH---HHHH-------
T ss_pred hhcCCcEEEEecccCCCcch-------hHHHHHHHHHHcCCEEeCcCCCCceEEEEcCCCch--HH---HHHH-------
Confidence 57999999999986421110 124788899999999999998 6999999864321 12 2211
Q ss_pred ccCCccEEeccchHHHHHHcCCccCCCCCCC
Q 001082 881 LWNKKLHVVRSQWLEDCLAKEQKSEEYEYSL 911 (1160)
Q Consensus 881 ~~~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~v 911 (1160)
..+.++||+++||++|++.++++||+.|.+
T Consensus 342 -~~~~I~IV~~~Wl~~c~~~~~~vdE~~Y~l 371 (372)
T 3ef0_A 342 -SMGNIKVVKLNWLTESLSQWKRLPESDYLL 371 (372)
T ss_dssp -HSSSCCEEEHHHHHHHHHTTSCCCGGGGBC
T ss_pred -hcCCCEEEcHHHHHHHHHhCCcCChhhcee
Confidence 124689999999999999999999999986
No 59
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=98.60 E-value=1.8e-08 Score=106.93 Aligned_cols=79 Identities=23% Similarity=0.331 Sum_probs=60.8
Q ss_pred CCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhcCC-CeeecchHHHHHhcCc
Q 001082 654 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKK 732 (1160)
Q Consensus 654 ~s~lF~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia~~~~~~K~~~a~~~~-~VV~p~WV~dCi~~~~ 732 (1160)
...+|+|+.|++++......+++|+.+|..+||+++.++.. ++. +++.... .+..+ +||+|+||+|||++++
T Consensus 116 ~~~LF~g~~~~~v~~~~~~~~~~L~~lI~~~GG~v~~~~~~-~~i-iI~~~~~-----~~~~~~~~V~p~Wi~DsI~~~~ 188 (199)
T 3u3z_A 116 RGTLFADQPVMFVSPASSPPVAKLCELVHLCGGRVSQVPRQ-ASI-VIGPYSG-----KKKATVKYLSEKWVLDSITQHK 188 (199)
T ss_dssp CCCTTTTSCCEEECTTCSSCHHHHHHHHHHTTCCBCSSGGG-CSE-EESCCCS-----CCCTTCEEECHHHHHHHHHHTS
T ss_pred cchhhCCCeEEEECCCCCCCHHHHHHHHHHcCCEEeccCCC-CEE-EEeCCch-----hccCCCcEEChhHHHHHHHcCC
Confidence 34799999655455555677899999999999999998853 444 4443222 23444 9999999999999999
Q ss_pred cCCCCcc
Q 001082 733 LLQLQPK 739 (1160)
Q Consensus 733 lLp~~p~ 739 (1160)
++|+++|
T Consensus 189 llp~~~Y 195 (199)
T 3u3z_A 189 VCAPENY 195 (199)
T ss_dssp CCCGGGG
T ss_pred cCChHhc
Confidence 9999976
No 60
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=98.55 E-value=2.6e-08 Score=94.87 Aligned_cols=89 Identities=15% Similarity=0.267 Sum_probs=65.0
Q ss_pred CCCCcccCeEEEEEcCCCCCC-hHHHHHHHHHcCCEEEecCCCCceEEEEecCCChh--hHhhhc-----CCCeeecchH
Q 001082 653 GETSIFSDMVFYFVNVPPAYS-LDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLK--YEAAKR-----RGDVIHYSWV 724 (1160)
Q Consensus 653 ~~s~lF~G~~F~vv~~~~~~~-k~eLeklI~~~GG~iv~n~~~s~Th~Ia~~~~~~K--~~~a~~-----~~~VV~p~WV 724 (1160)
....+|+|+.||++....... ++-...++.++||+++..+++.+||+|+.+..+.+ .+.+.. ...||+++||
T Consensus 7 ~~~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~s~~~~l~~l~~~~l~~~~~iV~~~Wv 86 (106)
T 2jw5_A 7 EAEEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRLPQLPPGAQLVKSAWL 86 (106)
T ss_dssp CGGGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCSTTCTTCCEEEECSSSCHHHHHHHTTCSSCCSSCEEEEHHHH
T ss_pred cCcCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeeccCCCccEEEEcCCCCHHHHHHHHhhcccCCCcEEecCchH
Confidence 346799999999875443333 34455699999999999998889999986433221 111111 1279999999
Q ss_pred HHHHhcCccCCCCcccc
Q 001082 725 LDCCSQKKLLQLQPKYY 741 (1160)
Q Consensus 725 ~dCi~~~~lLp~~p~~~ 741 (1160)
.||++.+++++.++|++
T Consensus 87 ~dci~~~~llde~~y~~ 103 (106)
T 2jw5_A 87 SLCLQERRLVDVAGFSI 103 (106)
T ss_dssp HHHHHTCSCCCGGGTBC
T ss_pred HHHHhcCcccCcccccc
Confidence 99999999999988754
No 61
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=98.52 E-value=7.6e-08 Score=112.52 Aligned_cols=90 Identities=17% Similarity=0.260 Sum_probs=68.5
Q ss_pred ccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhhhh
Q 001082 802 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKHL 880 (1160)
Q Consensus 802 ~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~ 880 (1160)
.+|.||+|+|+|+.+..... ....+...+..+||+++..++ +|||||+....+. .+ +...
T Consensus 351 ~~L~G~~IvfSG~~p~~~~~-------~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~~~~t~--K~---~~A~------- 411 (442)
T 3ef1_A 351 KVLKGCRLLFSGVIPLGVDV-------LSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTE--KV---KKAV------- 411 (442)
T ss_dssp TTSTTCEEEEESSSCTTSCS-------TTSHHHHHHHTTTCEECSSSSSCCSEEEECSCCCH--HH---HHHH-------
T ss_pred cccCCcEEEEecccCCCCCc-------cHHHHHHHHHHcCCEEeCCCCCCceEEEeCCCCCH--HH---HHHH-------
Confidence 47999999999986421100 124688899999999999998 5999999864321 12 2111
Q ss_pred ccCCccEEeccchHHHHHHcCCccCCCCCCC
Q 001082 881 LWNKKLHVVRSQWLEDCLAKEQKSEEYEYSL 911 (1160)
Q Consensus 881 ~~~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~v 911 (1160)
..+.++||+++||++|+..+++++|.+|.+
T Consensus 412 -~~g~IkIVs~~WL~dcl~~~krldE~~YlL 441 (442)
T 3ef1_A 412 -SMGNIKVVKLNWLTESLSQWKRLPESDYLL 441 (442)
T ss_dssp -HHSSSEEEEHHHHHHHHHHTSCCCGGGTBC
T ss_pred -hcCCCEEEeHHHHHHHHHcCCcCChhcccc
Confidence 124689999999999999999999999986
No 62
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=98.51 E-value=1.2e-07 Score=100.97 Aligned_cols=87 Identities=20% Similarity=0.240 Sum_probs=64.9
Q ss_pred CCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCC----ceE-EEEecCCC----hhhHh-hhcCC-Ceeecc
Q 001082 654 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNS----VTH-CVAADNKG----LKYEA-AKRRG-DVIHYS 722 (1160)
Q Consensus 654 ~s~lF~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~~~s----~Th-~Ia~~~~~----~K~~~-a~~~~-~VV~p~ 722 (1160)
...+|+|+.||+.+......+++|+.+|..+||+++..+... .+| +|+.++.. .++++ +...+ +||+++
T Consensus 112 ~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~~ 191 (214)
T 1t15_A 112 DRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTRE 191 (214)
T ss_dssp TSCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEHH
T ss_pred CCcccCCCEEEEEecCCCCCHHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCcccchhhHHHHHHhcCCcEEecc
Confidence 457999999998765455679999999999999998876431 224 45554322 24443 23345 999999
Q ss_pred hHHHHHhcCccCCCCccc
Q 001082 723 WVLDCCSQKKLLQLQPKY 740 (1160)
Q Consensus 723 WV~dCi~~~~lLp~~p~~ 740 (1160)
||+|||.+++++|+++|.
T Consensus 192 Wi~dsi~~~~~l~~~~Y~ 209 (214)
T 1t15_A 192 WVLDSVALYQCQELDTYL 209 (214)
T ss_dssp HHHHHHHHTSCCCSGGGB
T ss_pred HHHHhHhhcCcCCCccee
Confidence 999999999999999863
No 63
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=98.44 E-value=2e-07 Score=99.41 Aligned_cols=82 Identities=22% Similarity=0.360 Sum_probs=62.5
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEe-cCC----------------------CCceEEEEecCCChhhH-
Q 001082 655 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSM-NLN----------------------NSVTHCVAADNKGLKYE- 710 (1160)
Q Consensus 655 s~lF~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~-n~~----------------------~s~Th~Ia~~~~~~K~~- 710 (1160)
..+|+|+.||+.+......+++|+.+|..+||+++. .+. ..+||.|+..+. .++.
T Consensus 102 ~~lF~g~~~~l~~~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~-~~~~~ 180 (210)
T 2nte_A 102 PKLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDL-CNYHP 180 (210)
T ss_dssp CCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSC-SSCCC
T ss_pred ccccCceEEEEeccCCCCCHHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEeccc-cccCH
Confidence 579999999997655567799999999999999985 221 235888876642 2221
Q ss_pred -hhhcCC-CeeecchHHHHHhcCccCCCC
Q 001082 711 -AAKRRG-DVIHYSWVLDCCSQKKLLQLQ 737 (1160)
Q Consensus 711 -~a~~~~-~VV~p~WV~dCi~~~~lLp~~ 737 (1160)
.+...+ +||+++||+|||++++++|++
T Consensus 181 ~~~~~~~v~~V~~~Wl~dcI~~~~llp~~ 209 (210)
T 2nte_A 181 ERVRQGKVWKAPSSWFIDCVMSFELLPLD 209 (210)
T ss_dssp SCSEETTEEEEEHHHHHHHHHHTSCCCSC
T ss_pred HHHhccCcccccHHHHHHHHHhCeeccCC
Confidence 123344 899999999999999999986
No 64
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=98.41 E-value=2.9e-07 Score=98.98 Aligned_cols=90 Identities=20% Similarity=0.345 Sum_probs=69.9
Q ss_pred CccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCCCceEEEEecCCCcccchhhhHHHHHHHhhhh
Q 001082 801 WSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHL 880 (1160)
Q Consensus 801 ~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~ 880 (1160)
...+.+++|+|+|+.+ .+.+.+...|+.+||+++++.++|||+|++... +. .+-+. .+
T Consensus 11 ~~~~~~~~i~~SG~~~-----------~~~~~l~~~i~~lGg~v~~~~~~~THLI~~~~~-rT--~K~l~-A~------- 68 (219)
T 3sqd_A 11 LTPELTPFVLFTGFEP-----------VQVQQYIKKLYILGGEVAESAQKCTHLIASKVT-RT--VKFLT-AI------- 68 (219)
T ss_dssp CCGGGCCEEEECSCCH-----------HHHHHHHHHHHHTTCEECSSGGGCSEEECSSCC-CC--HHHHH-HT-------
T ss_pred cCCCCCeEEEEeCCCh-----------HHHHHHHHHHHHCCCEEeCCCCCceEEEECCCC-CC--HHHHH-HH-------
Confidence 4468899999999863 235678899999999999998789999997532 11 22111 11
Q ss_pred ccCCccEEeccchHHHHHHcCCccCCCCCCCCCC
Q 001082 881 LWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPT 914 (1160)
Q Consensus 881 ~~~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~v~~~ 914 (1160)
...+.||+++||.+|++.++.++|++|.+..+
T Consensus 69 --~~g~~IVs~~Wl~~c~~~~~~l~e~~y~l~d~ 100 (219)
T 3sqd_A 69 --SVVKHIVTPEWLEECFRCQKFIDEQNYILRDA 100 (219)
T ss_dssp --TTCSEEECHHHHHHHHHHTSCCCSGGGBCCCH
T ss_pred --HcCCCEecHHHHHHHHHcCCCCChHhccCCCc
Confidence 24568999999999999999999999998754
No 65
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=4.5e-07 Score=87.60 Aligned_cols=92 Identities=22% Similarity=0.327 Sum_probs=70.5
Q ss_pred CCCcccCeEEEEEcCCC-CCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhc-----C---CCeeecchH
Q 001082 654 ETSIFSDMVFYFVNVPP-AYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKR-----R---GDVIHYSWV 724 (1160)
Q Consensus 654 ~s~lF~G~~F~vv~~~~-~~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia~~~~~~K~~~a~~-----~---~~VV~p~WV 724 (1160)
...+|.|+.+|++...- ...++-+.++++.+||+++..+.+.+||||+.+.....+....+ . ..||+.+||
T Consensus 17 p~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve~~~~~e~~~~l~~~~l~~~~~~~lv~i~Wl 96 (120)
T 2coe_A 17 QDIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENELSDSVTHIVAENNSGSDVLEWLQAQKVQVSSQPELLDVSWL 96 (120)
T ss_dssp SCCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEESSCCHHHHHHHHHHCCCCCSSCCEEEEHHHH
T ss_pred cccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeeccCCCcCEEEecCCCHHHHHHHHhccccccccccEEeecHHH
Confidence 45799999999975432 22355667899999999999988899999996543333333222 1 289999999
Q ss_pred HHHHhcCccCCCCcccccccC
Q 001082 725 LDCCSQKKLLQLQPKYYLHLS 745 (1160)
Q Consensus 725 ~dCi~~~~lLp~~p~~~l~~s 745 (1160)
.+|++.|+++|.+.+|.|...
T Consensus 97 ~esmk~g~lv~ee~~~~l~~~ 117 (120)
T 2coe_A 97 IECIGAGKPVEMTGKHQLSGP 117 (120)
T ss_dssp HHHHHTTSCCCCSSSSBCCCS
T ss_pred HHHHHcCCccCcccceEeccC
Confidence 999999999999988887543
No 66
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=98.39 E-value=3.7e-07 Score=98.49 Aligned_cols=87 Identities=16% Similarity=0.223 Sum_probs=60.2
Q ss_pred CcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCC-----ceEEEEecC----CChhhHhhh-cCC-CeeecchH
Q 001082 656 SIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNS-----VTHCVAADN----KGLKYEAAK-RRG-DVIHYSWV 724 (1160)
Q Consensus 656 ~lF~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~~~s-----~Th~Ia~~~----~~~K~~~a~-~~~-~VV~p~WV 724 (1160)
.+|.|+.||+.+......+++|+.+|..+||+++..+... ++|+|+... ...+++.+. ..+ +||+++||
T Consensus 116 ~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~Wl 195 (229)
T 1l0b_A 116 KLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDWV 195 (229)
T ss_dssp -CCTTCEEEECSCCSSSCHHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC-------------------CEEETHHH
T ss_pred hhhcCceEEEEecCCCCCHHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccchhhhHHHHHHHcCCeEeehhHH
Confidence 7999999999765455679999999999999999887532 466555443 234555443 344 99999999
Q ss_pred HHHHhcCccCCCCcccccc
Q 001082 725 LDCCSQKKLLQLQPKYYLH 743 (1160)
Q Consensus 725 ~dCi~~~~lLp~~p~~~l~ 743 (1160)
+|||.+++++|+++| ++.
T Consensus 196 ldsI~~~~~~~~~~Y-~l~ 213 (229)
T 1l0b_A 196 LDSISVYRCRDLDAY-LVQ 213 (229)
T ss_dssp HHHHHTTSCCCGGGG-BCC
T ss_pred HHHHhcCCcCCccce-Ecc
Confidence 999999999998876 443
No 67
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=98.37 E-value=4.9e-07 Score=83.64 Aligned_cols=76 Identities=12% Similarity=0.174 Sum_probs=68.1
Q ss_pred CCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhcCC-CeeecchHHHHHhc
Q 001082 654 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQ 730 (1160)
Q Consensus 654 ~s~lF~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia~~~~~~K~~~a~~~~-~VV~p~WV~dCi~~ 730 (1160)
....|.|+.|||++.... +|++++.+|.++||++....+..++|+|+.+..+-|++.|...+ +||+.+|++++++.
T Consensus 4 ~~~~l~G~~~v~TG~l~~-~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~lgI~Ii~E~~f~~~l~~ 80 (92)
T 1l7b_A 4 GGEALKGLTFVITGELSR-PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLEA 80 (92)
T ss_dssp CCCSSTTCEEECSTTTTS-CHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHCSSSCCEEHHHHHHHHHH
T ss_pred CCCCcCCcEEEEecCCCC-CHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHHHcCCcEEeHHHHHHHHHh
Confidence 345799999998766555 89999999999999999999888899999988889999999998 99999999999963
No 68
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=98.33 E-value=5.5e-07 Score=96.12 Aligned_cols=85 Identities=14% Similarity=0.165 Sum_probs=62.4
Q ss_pred ccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCCCceEEEEecCCCcccchhhhHHHHHHHhhhhc
Q 001082 802 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLL 881 (1160)
Q Consensus 802 ~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~~ 881 (1160)
....+++|+|+|+.. + .++..|+.+||.+++++++|||+|++... +. .+- ...+
T Consensus 8 ~~~~~~~v~~sG~~~----~----------~~~~~i~~lGg~~~~~~~~~THlI~~~~~-rt--~K~-l~a~-------- 61 (209)
T 2etx_A 8 QESTAPKVLFTGVVD----A----------RGERAVLALGGSLAGSAAEASHLVTDRIR-RT--VKF-LCAL-------- 61 (209)
T ss_dssp ----CCEEEECSSCC----H----------HHHHHHHHTTCEECSSTTTCSEEECSSCC-CS--HHH-HHHH--------
T ss_pred ccCCCcEEEEeCCCc----H----------HHHHHHHHCCCEEeCCCCCceEEEECCCC-CC--HHH-HHHH--------
Confidence 457899999999863 1 23678999999999999999999997532 21 221 1112
Q ss_pred cCCccEEeccchHHHHHHcCCccCCCCCCCCC
Q 001082 882 WNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKP 913 (1160)
Q Consensus 882 ~~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~v~~ 913 (1160)
...+.||+++||++|+++++.++|++|.+..
T Consensus 62 -~~g~~IV~~~Wl~~~~~~~~~l~e~~y~~~~ 92 (209)
T 2etx_A 62 -GRGIPILSLDWLHQSRKAGFFLPPDEYVVTD 92 (209)
T ss_dssp -HHTCCEECTHHHHHHHHHTSCCCSGGGBCCC
T ss_pred -hcCCccccHHHHHHHHHcCCCCChhhccccC
Confidence 1245799999999999999999999998854
No 69
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=98.22 E-value=2.4e-06 Score=81.54 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=68.4
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCC-hhhHhhhcCC-CeeecchHHHHHhcC
Q 001082 655 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKG-LKYEAAKRRG-DVIHYSWVLDCCSQK 731 (1160)
Q Consensus 655 s~lF~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia~~~~~-~K~~~a~~~~-~VV~p~WV~dCi~~~ 731 (1160)
...|.|+.|||++.-...+|++++.+|..+||++....+..++|+|+++..+ -|+..|...+ +||+-+|++++++.+
T Consensus 30 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~sK~~kA~~lgI~Ii~E~~f~~ll~~~ 108 (109)
T 2k6g_A 30 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRNL 108 (109)
T ss_dssp TTTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCHHHHHHHHHHTCEEECHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcccCCceEEEECCCCChHHHHHHHHcCCeEEeHHHHHHHHHhC
Confidence 4579999999987666789999999999999999999988889999987767 7998888888 999999999999765
No 70
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=98.21 E-value=2.4e-06 Score=94.44 Aligned_cols=88 Identities=16% Similarity=0.191 Sum_probs=61.8
Q ss_pred CCccCCCeEEEEc-cCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCCC-ceEEEEecCCCcccchhhhHHHHHHHh
Q 001082 800 KWSCFHGCCIYFY-HSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN-ATHVVVLSVLGYDVNFNSLTESFTARE 877 (1160)
Q Consensus 800 ~~~lF~gc~~yl~-~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~-vTHVVV~~~~~~~~~~~~l~~~l~~~~ 877 (1160)
...+|.|+.||+. +... .. .+.|..+|..+||+++.+++. +||||+.. . ...+ +..+
T Consensus 7 ~s~lF~G~~f~V~sg~~~---~~--------k~~L~~lI~~~GG~v~~n~~~~t~~iIa~~-~--~~k~---~~~~---- 65 (263)
T 3ii6_X 7 ISNIFEDVEFCVMSGTDS---QP--------KPDLENRIAEFGGYIVQNPGPDTYCVIAGS-E--NIRV---KNII---- 65 (263)
T ss_dssp CCCTTTTCEEEECCCC-----CC--------HHHHHHHHHHTTCEECSSCCTTEEEEECSS-C--CHHH---HHHH----
T ss_pred CcccCCCeEEEEEcCCCC---CC--------HHHHHHHHHHcCCEEEecCCCCEEEEEeCC-C--CHHH---HHHH----
Confidence 3569999999995 4321 11 458889999999999988875 45555532 1 1112 2111
Q ss_pred hhhccCCccEEeccchHHHHHHcCCccCCCCCCCC
Q 001082 878 KHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLK 912 (1160)
Q Consensus 878 ~~~~~~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~v~ 912 (1160)
..+...||+++||.+|+++++++|.++|.+-
T Consensus 66 ----~~g~~~IV~p~Wv~Dci~~~~llp~~p~~~~ 96 (263)
T 3ii6_X 66 ----LSNKHDVVKPAWLLECFKTKSFVPWQPRFMI 96 (263)
T ss_dssp ----HSCSCCEECHHHHHHHHHHTSCCCCCGGGEE
T ss_pred ----hcCCCCEeehHHHHHHHhcCCcCCCCHHHHh
Confidence 1245799999999999999999999988544
No 71
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=98.14 E-value=8e-07 Score=98.19 Aligned_cols=87 Identities=11% Similarity=0.044 Sum_probs=46.8
Q ss_pred CCCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCC---h----hhHhh-h-c--------C
Q 001082 653 GETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKG---L----KYEAA-K-R--------R 715 (1160)
Q Consensus 653 ~~s~lF~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia~~~~~---~----K~~~a-~-~--------~ 715 (1160)
....+|+||.||+.+......++-|+.+|..+||+++..++..+||+|+ +..+ . +++.. . + .
T Consensus 156 ~~~~lF~g~~~yl~~~~~~~~~~~l~~~i~~~GG~v~~~l~~~t~hVV~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (264)
T 1z56_C 156 FPLFLFSNRIAYVPRRKISTEDDIIEMKIKLFGGKITDQQSLCNLIIIP-YTDPILRKDCMNEVHEKIKEQIKASDTIPK 234 (264)
T ss_dssp CCCC--------------------CHHHHHHHTTSCCCCSSSCSEEECC-CSSTTTHHHHSSHHHHTTTTTTTSSSSCCC
T ss_pred CchhhhCCeEEEEecCCCchhHHHHHHHHHHcCCEEecccCCCEEEEEe-CCCccchHHHHHHHHHHHHhhcccccccCC
Confidence 3467999999998654333445667889999999999888754455554 3322 1 12221 1 1 2
Q ss_pred C-CeeecchHHHHHhcCccCCCCccc
Q 001082 716 G-DVIHYSWVLDCCSQKKLLQLQPKY 740 (1160)
Q Consensus 716 ~-~VV~p~WV~dCi~~~~lLp~~p~~ 740 (1160)
. .||+|+||.+|++.|+++|.++|.
T Consensus 235 ~~~iV~~~Wv~dci~~~~ll~e~~Y~ 260 (264)
T 1z56_C 235 IARVVAPEWVDHSINENCQVPEEDFP 260 (264)
T ss_dssp CCEEECTHHHHHHHTTSCCCSSCCC-
T ss_pred CCEEecHHHHHHHHHcCCcCCHHHcC
Confidence 2 799999999999999999998863
No 72
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=4.3e-06 Score=79.97 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=68.0
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCC-hhhHhhhcCC-CeeecchHHHHHhcC
Q 001082 655 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKG-LKYEAAKRRG-DVIHYSWVLDCCSQK 731 (1160)
Q Consensus 655 s~lF~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia~~~~~-~K~~~a~~~~-~VV~p~WV~dCi~~~ 731 (1160)
...|.|+.|||++.....+|++++.+|.++||++....+..++|+|+.+..+ -|++.|...+ +||+-+|++++++.+
T Consensus 20 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~sKl~KA~~lgI~IisE~~f~~ll~~~ 98 (112)
T 2ebu_A 20 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTM 98 (112)
T ss_dssp SSSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCSHHHHHHHHHTCEEEEHHHHHHHHHHS
T ss_pred CCCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEeccccCCeeEEEecCCCChHHHHHHHHcCCeEEeHHHHHHHHhhC
Confidence 3579999999987666789999999999999999999988889999987766 7999898888 999999999999754
No 73
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.13 E-value=2.3e-06 Score=94.36 Aligned_cols=101 Identities=11% Similarity=0.119 Sum_probs=68.5
Q ss_pred CCccCCCeEEEEccCCCCCCC---------------hhHHH---HHHHHHHHHHHHHhcCCEEEccCCC-------ceEE
Q 001082 800 KWSCFHGCCIYFYHSTEPLSP---------------DWEVL---LGLALRRLKLEISFHGGKVCNNLAN-------ATHV 854 (1160)
Q Consensus 800 ~~~lF~gc~~yl~~~~~~~~~---------------d~~~i---~~~~~~~l~~~I~~~GG~v~~~ls~-------vTHV 854 (1160)
...+|.||.|+|.++...... +.+.. .......|+..|+.+||++++++++ +||+
T Consensus 12 ~~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~~t~L 91 (259)
T 1kzy_C 12 NKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQCLL 91 (259)
T ss_dssp STTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTCEEEE
T ss_pred CCcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCCCeEE
Confidence 356999999999887431000 00000 0013468899999999999998874 4899
Q ss_pred EEecCCCcccchhhhHHHHHHHhhhhccCCccEEeccchHHHHHHcCCccCCCCCCCCC
Q 001082 855 VVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKP 913 (1160)
Q Consensus 855 VV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~v~~ 913 (1160)
|.+... +. .+-++ .+ ...+.||++.||.+|++.++.++++.|.++.
T Consensus 92 Ia~~~~-rt--~K~l~-al---------a~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~~ 137 (259)
T 1kzy_C 92 IADQHC-RT--RKYFL-CL---------ASGIPCVSHVWVHDSCHANQLQNYRNYLLPA 137 (259)
T ss_dssp EESSCC-CS--HHHHH-HH---------HHTCCEEETHHHHHHHHHTSCCCGGGSBCCC
T ss_pred EcCCCC-Cc--HHHHH-HH---------hcCCCCccHHHHHHHHHcCCcCCHHHccCCC
Confidence 886522 22 22111 11 1357899999999999999999999999864
No 74
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=98.12 E-value=1.9e-06 Score=83.86 Aligned_cols=92 Identities=14% Similarity=0.190 Sum_probs=71.5
Q ss_pred CCCcccCeEEEEEcCC-CCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhH--------hhh-c-CC-Ceeec
Q 001082 654 ETSIFSDMVFYFVNVP-PAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYE--------AAK-R-RG-DVIHY 721 (1160)
Q Consensus 654 ~s~lF~G~~F~vv~~~-~~~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia~~~~~~K~~--------~a~-~-~~-~VV~p 721 (1160)
.+..|.|+.+||+.-. ....++-|++++.++||++...+.+++||||+.+.....+. .+. . .+ .+|+.
T Consensus 7 ~~~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~s~~~~~~~L~~~~~~l~~~~~~~~lLdi 86 (133)
T 2dun_A 7 GSTRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDACSSEATHVVMEETSAEEAVSWQERRMAAAPPGCTPPALLDI 86 (133)
T ss_dssp SSCSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSSCCTTCCEEEESSCCHHHHHHHHHHHHHHSCTTCCCCEEEEH
T ss_pred CccccCccEEEEecCCcCHHHHHHHHHHHHhcCCEeccccCCCceEEEecCCCHHHHHHHHHHhhcccCcCCCCcEEecc
Confidence 3469999999998532 33457888999999999999999999999999554332222 221 1 23 79999
Q ss_pred chHHHHHhcCccCCCCcccccccC
Q 001082 722 SWVLDCCSQKKLLQLQPKYYLHLS 745 (1160)
Q Consensus 722 ~WV~dCi~~~~lLp~~p~~~l~~s 745 (1160)
.|+.+|++.|+++|.+.+|+|...
T Consensus 87 sWltecm~~g~pV~~e~~~~l~~~ 110 (133)
T 2dun_A 87 SWLTESLGAGQPVPVECRHRLEVA 110 (133)
T ss_dssp HHHHHHHHHTSCCCCCTTTSCCCC
T ss_pred HHHHHHHhcCCcCCcccceEeecc
Confidence 999999999999999999887653
No 75
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=98.10 E-value=4.4e-06 Score=80.07 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=69.6
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEec---CCChhhHhhhcCC-Ceeecch-------
Q 001082 655 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAAD---NKGLKYEAAKRRG-DVIHYSW------- 723 (1160)
Q Consensus 655 s~lF~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia~~---~~~~K~~~a~~~~-~VV~p~W------- 723 (1160)
...|.|+.|+|++.-.. +|+++.++|.++||++....+..++|+|+++ ..+-|+..|...+ +||+-+|
T Consensus 8 ~~~l~G~~~ViTG~l~~-~R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~~l~~~~~~ 86 (113)
T 2cok_A 8 DKPLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMNKKMEEVKEANIRVVSEDFLQDVSAS 86 (113)
T ss_dssp CCSSSSCEEEECSCCSS-CHHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCCHHHHHHHHTTCCEECTHHHHHHHSC
T ss_pred CCCcCCCEEEEEecCCC-CHHHHHHHHHHCCCEEcCccccCccEEEECCCCCCCChHHHHHHHCCCcEEeHHHHHHHHhh
Confidence 45799999998765544 8999999999999999999887778888763 2567888888888 9999999
Q ss_pred ---HHHHHhcCccCCCCc
Q 001082 724 ---VLDCCSQKKLLQLQP 738 (1160)
Q Consensus 724 ---V~dCi~~~~lLp~~p 738 (1160)
+.+|+....++||..
T Consensus 87 ~~~~~~~i~k~~i~~w~~ 104 (113)
T 2cok_A 87 TKSLQELFLAHILSSWGA 104 (113)
T ss_dssp CSCHHHHHHHTBCSSCCC
T ss_pred chhHHHHHHHhcCCCCCC
Confidence 777888888888874
No 76
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=98.01 E-value=9.2e-06 Score=88.21 Aligned_cols=87 Identities=20% Similarity=0.162 Sum_probs=64.4
Q ss_pred CCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEc--cCC-CceEEEEecCCCcccchhhhHHHHHHHhhhh
Q 001082 804 FHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCN--NLA-NATHVVVLSVLGYDVNFNSLTESFTAREKHL 880 (1160)
Q Consensus 804 F~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~--~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~ 880 (1160)
-++.+|.|+|+.. .+...+...|+.+||++++ ..+ +|||+|++... +. .+-+. .+
T Consensus 7 ~~~~~~~~Sg~~~-----------~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~-RT--~K~l~-ai------- 64 (235)
T 3al2_A 7 KKQYIFQLSSLNP-----------QERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPL-RN--EKYLA-SV------- 64 (235)
T ss_dssp -CCCEEEEESCCH-----------HHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCC-CS--HHHHH-HH-------
T ss_pred CCCEEEEEcCCCH-----------HHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCC-CC--HHHHH-HH-------
Confidence 3577889998752 1345688999999999986 354 69999998642 22 22111 11
Q ss_pred ccCCccEEeccchHHHHHHcCCccCCCCCCCCCC
Q 001082 881 LWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPT 914 (1160)
Q Consensus 881 ~~~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~v~~~ 914 (1160)
.....||+++||.+|+++|+.++|++|.+..+
T Consensus 65 --a~G~wIvs~~wl~~s~~~g~~l~E~~ye~~~~ 96 (235)
T 3al2_A 65 --AAGKWVLHRSYLEACRTAGHFVQEEDYEWGSS 96 (235)
T ss_dssp --HTTCEEECTHHHHHHHHHTSCCCSGGGBTTSH
T ss_pred --HcCCcCccHHHHHHHHHcCCCCChhceeecCc
Confidence 13568999999999999999999999988765
No 77
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=98.00 E-value=7e-06 Score=89.49 Aligned_cols=91 Identities=20% Similarity=0.292 Sum_probs=64.9
Q ss_pred ccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEcc-----CC----------------------CceEE
Q 001082 802 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNN-----LA----------------------NATHV 854 (1160)
Q Consensus 802 ~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~-----ls----------------------~vTHV 854 (1160)
.+|.||.|||.+... ...+ ....|...|+.+||++.++ ++ +.|||
T Consensus 1 ~lF~g~~F~ls~~~~-~~~~-------~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~l 72 (241)
T 2vxb_A 1 LIFDDCVFAFSGPVH-EDAY-------DRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFV 72 (241)
T ss_dssp CTTTTEEEEECCCSS-TTSS-------CHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEE
T ss_pred CCCCCcEEEEecCCC-Cchh-------hHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEE
Confidence 379999999998721 1111 2457899999999999886 21 13888
Q ss_pred EEecCCCcccchhhhHHHHHHHhhhhccCCccEEeccchHHHHHHcCCccCCCCCCCCC
Q 001082 855 VVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKP 913 (1160)
Q Consensus 855 VV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~v~~ 913 (1160)
|.+... +. .+-++ .+ ...+.||+++||.+|++.++++|.++|.+..
T Consensus 73 ia~~~~-rt--~K~~~-al---------a~gipiV~~~Wi~dc~~~~~~~~~~~ylL~~ 118 (241)
T 2vxb_A 73 VSDTFS-RK--VKYLE-AL---------AFNIPCVHPQFIKQCLKMNRVVDFSPYLLAS 118 (241)
T ss_dssp ECSSCC-CC--HHHHH-HH---------HHTCCEECTHHHHHHHHHTSCCCSGGGBBEE
T ss_pred EcCCCC-Cc--HHHHH-HH---------HcCCCEecHHHHHHHHHcCCcCChhhccCCC
Confidence 886432 22 12111 11 2357999999999999999999999999864
No 78
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=97.98 E-value=6.5e-06 Score=88.45 Aligned_cols=83 Identities=19% Similarity=0.235 Sum_probs=62.9
Q ss_pred CCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCCCceEEEEecCCCcccchhhhHHHHHHHhhhhccCC
Q 001082 805 HGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNK 884 (1160)
Q Consensus 805 ~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 884 (1160)
.+.+|.|+|+.+.. ....|+.+||+++++.++|||+|++... +. .+-+. .+ ..
T Consensus 7 ~~~~v~fSG~~~~~--------------~~~~i~~lGg~v~~~~~~~THlV~~~~~-RT--~K~l~-Ai---------a~ 59 (220)
T 3l41_A 7 KRVYITFTGYDKKP--------------SIDNLKKLDMSITSNPSKCTHLIAPRIL-RT--SKFLC-SI---------PY 59 (220)
T ss_dssp CCEEEEECSCSSCC--------------CCGGGGGGTEEECSCTTTCSEEECSSCC-CB--HHHHH-HG---------GG
T ss_pred ceEEEEEeccCCCC--------------CcchHhhcceeeccCchhhhhhhhhhHh-hh--cceee-cC---------CC
Confidence 46789999987521 1457999999999999899999997532 21 22111 11 23
Q ss_pred ccEEeccchHHHHHHcCCccCCCCCCCCCC
Q 001082 885 KLHVVRSQWLEDCLAKEQKSEEYEYSLKPT 914 (1160)
Q Consensus 885 ~~~VVs~~Wl~~ci~~~~~v~E~~Y~v~~~ 914 (1160)
.+.||+++||.+|++.|+.++|++|.+..+
T Consensus 60 g~~IVs~~Wl~~~~~~~~~l~e~~y~l~d~ 89 (220)
T 3l41_A 60 GPCVVTMDWINSCLKTHEIVDEEPYLLNDP 89 (220)
T ss_dssp CCEEECHHHHHHHHHHTSCCCSGGGBCCCH
T ss_pred CCeEEEhHHHHhhhhhhhccccCccccCCc
Confidence 469999999999999999999999988654
No 79
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=97.92 E-value=4.2e-06 Score=63.64 Aligned_cols=34 Identities=35% Similarity=0.653 Sum_probs=27.0
Q ss_pred hhhhhhhhcccccCCCcccCCChhHHHHHhhccC
Q 001082 747 SSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVD 780 (1160)
Q Consensus 747 ~t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~~ 780 (1160)
+|++.++.++|+|||||+.++++++|+.+|.+|.
T Consensus 2 ~t~~~~~~n~D~yGDSY~rd~t~~eLk~il~~m~ 35 (37)
T 1ik9_C 2 STKEHFAREYDCYGDSYFIDTDLNQLKEVFSGIK 35 (37)
T ss_dssp ------CCSBCTTSCBSSSCCCHHHHHHHHHTCC
T ss_pred cHHHHHHHhcccccccccCcCCHHHHHHHHHHcc
Confidence 4678899999999999999999999999999885
No 80
>2hvq_A ORF1, hypothetical 37.6 kDa protein in GP24-HOC intergenic region; RNA, ligase, lysine adenylate; HET: APK; 2.40A {Enterobacteria phage T4} PDB: 2hvr_A* 2hvs_A*
Probab=97.65 E-value=0.00013 Score=83.14 Aligned_cols=107 Identities=12% Similarity=0.063 Sum_probs=69.8
Q ss_pred hcCCCcEEEEEecceEEEEEEEeCCEEEEEeCCCCCCCc----chhhHHHH-------HHHhcc---cCceeeeeeEEEE
Q 001082 241 KLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE----YGHAMSKI-------IEQNVL---VDRCILDGEMLVW 306 (1160)
Q Consensus 241 ~~~~~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~t~----~~p~l~~~-------l~~~~~---~~~~ILDGElv~~ 306 (1160)
.+.+..|++++|+||..+-+...++++.++||++.-.+. .+..+... +...+. ..+++|-||++..
T Consensus 25 ~l~~~~vvvtEKlDG~N~~i~~~~~~i~~~sR~~~l~~~~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~i~GE~~G~ 104 (335)
T 2hvq_A 25 GLTGGEWVAREXIHGTNFSLIIERDKVTCAKRTGPILPAEDFFGYEIILKNYADSIKAVQDIMETSAVVSYQVFGEFAGP 104 (335)
T ss_dssp TCSCSCEEEEECCSSEEEEEEEETTEEEEEETTEECCTTCCCTTTHHHHHHHHHHHHHHHTTHHHHTEEEEEEEEEEESB
T ss_pred ccCCCcEEEEEEecCcceEEEEECCEEEEecCCcccCCccccchHHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEccC
Confidence 355678999999999999999999999999999865321 11111111 111111 2689999999963
Q ss_pred eCCCCcccccccHHHHHHHhccCCCCCCccEEEEEEeee-eeCCcccccCCHHHHHHHHHHh
Q 001082 307 DTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVL-YVGDTSVIHQSLKERHELLQKV 367 (1160)
Q Consensus 307 d~~~~~~~pF~~lq~i~~~~r~~~~~~~~~~~~~vFDiL-~lng~sl~~~pl~eRr~~L~~~ 367 (1160)
. + ..++.-. . ..|++|||. ..++..-.-+|+.+|+++++.+
T Consensus 105 ~-----I-------------q~~i~Y~-~-~~FyvFDI~~~~~~~~~~~l~~~~~~~l~~~~ 146 (335)
T 2hvq_A 105 G-----I-------------QKNVDYG-D-KDFYVFDIIVTTESGDVTYVDDYMMESFCNTF 146 (335)
T ss_dssp T-----T-------------BSSCCCC-S-SEEEEEEEEEEETTCCEEECCHHHHHHHHHHH
T ss_pred c-----c-------------cCCcccC-C-CeEEEEEEEEecCCCceeeCCHHHHHHHHHHc
Confidence 2 1 0110111 2 479999997 4343222357999999999986
No 81
>1s68_A RNA ligase 2; ribonucleic acid ligase, RNA repair; HET: AMP; 1.90A {Enterobacteria phage T4} SCOP: d.142.2.4
Probab=97.61 E-value=0.0003 Score=76.96 Aligned_cols=107 Identities=14% Similarity=0.065 Sum_probs=69.4
Q ss_pred hcCCCcEEEEEecceEEEEEEEeCCEEEEEeCCCCCCCc----chhhHHH-------HHHHhcc---cCceeeeeeEEEE
Q 001082 241 KLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE----YGHAMSK-------IIEQNVL---VDRCILDGEMLVW 306 (1160)
Q Consensus 241 ~~~~~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~t~----~~p~l~~-------~l~~~~~---~~~~ILDGElv~~ 306 (1160)
.+.+.+|++++|+||.-+-|...++++.++||++.-.+. .+..+.. .+.+.+. ..+++|-||++..
T Consensus 24 ~~~~~~vvvtEKldG~N~~i~~~~~~i~~~sR~~~l~~~~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~GE~~G~ 103 (249)
T 1s68_A 24 GLTGGEWVAREKIHGTNFSLIIERDKVTCAKRTGPILPAEDFFGYEIILKNYADSIKAVQDIMETSAVVSYQVFGEFAGP 103 (249)
T ss_dssp TCSCSCEEEEECCCSEEEEEEEESSCEEEEETTEECCTTCCCTTTHHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEEST
T ss_pred ccCCCCEEEEEEECCcceEEEEECCEEEEEeCCcccCCCCccchHHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEEccc
Confidence 355678999999999999998888899999999864321 1111111 1111121 2789999999963
Q ss_pred eCCCCcccccccHHHHHHHhccCCCCCCccEEEEEEeee-eeCCcccccCCHHHHHHHHHHh
Q 001082 307 DTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVL-YVGDTSVIHQSLKERHELLQKV 367 (1160)
Q Consensus 307 d~~~~~~~pF~~lq~i~~~~r~~~~~~~~~~~~~vFDiL-~lng~sl~~~pl~eRr~~L~~~ 367 (1160)
.-..+ ..+. . ..|++|||. ..++....-+++.+|+++++.+
T Consensus 104 ~Iq~~----------------v~Y~---~-~~FyvFdI~~~~~~g~~~~l~~~~~~~l~~~~ 145 (249)
T 1s68_A 104 GIQKN----------------VDYC---D-KDFYVFDIIVTTESGDVTYVDDYMMESFCNTF 145 (249)
T ss_dssp TTSSS----------------CCCC---S-CEEEEEEEEEEETTCCEEECCHHHHHHHHHHH
T ss_pred cccCC----------------cccC---C-CeEEEEEEEEecCCCccccCCHHHHHHHHHHC
Confidence 20000 0111 2 479999996 4343223356999999999886
No 82
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=97.54 E-value=7.3e-05 Score=84.38 Aligned_cols=173 Identities=20% Similarity=0.212 Sum_probs=105.3
Q ss_pred cEEEEEecceEEEEEEEeCCE-EEEEeC----CCCCCCcchhhHHHHHHHhc-ccCceeeeeeEEEEeCC----------
Q 001082 246 EVVIECKFDGDRIQIHKNGSE-IHYFSR----SFLDHSEYGHAMSKIIEQNV-LVDRCILDGEMLVWDTS---------- 309 (1160)
Q Consensus 246 ~~~vE~K~DGeR~qih~~g~~-v~~fSR----~g~d~t~~~p~l~~~l~~~~-~~~~~ILDGElv~~d~~---------- 309 (1160)
.|++|+|+||..+.+.+.+|. ++..|| .|+|+|.....|... -..+ .+..+.+-||++.-...
T Consensus 114 ~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~I-P~~L~~p~~leVRGEv~m~~~~F~~lN~~~~~ 192 (332)
T 1ta8_A 114 AYCCELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSV-PMRLTEPISVEVRGECYMPKQSFVALNEEREE 192 (332)
T ss_dssp CEEEEEEECSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHTTCTTS-CSBCSSCCCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred eEEEeeeecceEEEEEEECCEEEEEEcCCCCccchhHHHHHHHhcCC-ccccCCCCeEEEEEEEEEEHHHHHHHHHHHHh
Confidence 599999999999999998887 799999 688888632221110 0011 13458899999873210
Q ss_pred CCcccccccHHHHH-HHhccCCCC---CCccEEEEEEeeeeeCCcccccCCHHHHHHHHHHhhcCCCCcceeeccCCCCC
Q 001082 310 LNRFAEFGSNQEIA-KAARDGLSS---DRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLN 385 (1160)
Q Consensus 310 ~~~~~pF~~lq~i~-~~~r~~~~~---~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~~~ 385 (1160)
.| -.+|..-+..+ ...| ..++ ...++.|++|++...+|.. -.+..++.+.|..+-=++...
T Consensus 193 ~g-~~~faNPRNaAAGsLr-qld~~ita~R~L~ff~y~i~~~~~~~--~~t~~e~l~~L~~~GF~v~~~----------- 257 (332)
T 1ta8_A 193 NG-QDIFANPRNAAAGSLR-QLDTKIVAKRNLNTFLYTVADFGPMK--AKTQFEALEELSAIGFRTNPE----------- 257 (332)
T ss_dssp TT-CCCCSSHHHHHHHHHT-CSBHHHHHTSCCEEEEEEESCCTTCC--CSBHHHHHHHHHHTTCCCCTT-----------
T ss_pred cC-CccccChHHHHHHHHH-ccChhhHhhCCCEEEEEecccccCCC--CCCHHHHHHHHHHcCCCCCCc-----------
Confidence 00 01333222211 1111 1111 1224999999996444432 268999999999875333211
Q ss_pred ccccCCCCCccceecCCHHHHHHHHHHHHHc------CCceEEEecCCCCCcC----CCCCCCe---EEEccc
Q 001082 386 SHVRPQGEPCWSLVAHNVDEVEKFFKETIEN------RDEGIVLKDLGSKWEP----GDRSGKW---LKLKPE 445 (1160)
Q Consensus 386 ~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~------g~EGlVlK~~ds~Y~p----GkRs~~W---lKlKpe 445 (1160)
...+.+.+++.++++.+.+. .-.|||+|--+..|.. ..|.+.| +|+.++
T Consensus 258 -----------~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~tsk~PRWAiAyKfpae 319 (332)
T 1ta8_A 258 -----------RQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFALQDELGFTVKAPRWAIAYKFPPE 319 (332)
T ss_dssp -----------CEEESSHHHHHHHHHHHHHTGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEEECC--
T ss_pred -----------ceEeCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEecCHHHHHHhCCcCCCCCceeEecCCCc
Confidence 23467899999999998765 5689999976655542 3456677 455553
No 83
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.53 E-value=5e-05 Score=69.21 Aligned_cols=80 Identities=16% Similarity=0.318 Sum_probs=57.3
Q ss_pred CCCcccCeEEEEEcCCC----CCChHHHHHHHHHcCCEEEecCCCCc--eEEEEecCCChhhHhhhcCCCeeecchHHHH
Q 001082 654 ETSIFSDMVFYFVNVPP----AYSLDSLHKMVVENGGTFSMNLNNSV--THCVAADNKGLKYEAAKRRGDVIHYSWVLDC 727 (1160)
Q Consensus 654 ~s~lF~G~~F~vv~~~~----~~~k~eLeklI~~~GG~iv~n~~~s~--Th~Ia~~~~~~K~~~a~~~~~VV~p~WV~dC 727 (1160)
...+|+|+.|++-.+.. ....++|+++|..|||+++..+.... .+.|++--++. .-+.|+|.+|.+|
T Consensus 8 ~~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpyN~t-------~LpTVtpTYI~aC 80 (106)
T 2l42_A 8 SGPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRESKENVFIVSPYNHT-------NLPTVTPTYIKAC 80 (106)
T ss_dssp SSCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTTCCC-------SSSBCCTTHHHHH
T ss_pred cCccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCcccccCCeEEEeCCCCC-------CCccccHHHHHHH
Confidence 34579999999854332 23589999999999999987764221 23333221111 1299999999999
Q ss_pred HhcCccCCCCccc
Q 001082 728 CSQKKLLQLQPKY 740 (1160)
Q Consensus 728 i~~~~lLp~~p~~ 740 (1160)
|.++.+|++.+|-
T Consensus 81 ~~~nTLLnv~~YL 93 (106)
T 2l42_A 81 CQSNSLLNMENYL 93 (106)
T ss_dssp HHSTTSCGGGGCC
T ss_pred HhcCceecccccc
Confidence 9999999999863
No 84
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00011 Score=66.95 Aligned_cols=87 Identities=13% Similarity=0.169 Sum_probs=64.5
Q ss_pred CccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCCC--ce-EEEEecCCCcccchhhhHHHHHHHh
Q 001082 801 WSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN--AT-HVVVLSVLGYDVNFNSLTESFTARE 877 (1160)
Q Consensus 801 ~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~--vT-HVVV~~~~~~~~~~~~l~~~l~~~~ 877 (1160)
...|+|..|||..-+.....- ...+.|.++|+.+||+|...+.. .. +.||....
T Consensus 9 ~~vF~g~~Fyin~d~~a~ds~------~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpyN----------------- 65 (106)
T 2l42_A 9 GPPLSNMKFYLNRDADAHDSL------NDIDQLARLIRANGGEVLDSKPRESKENVFIVSPYN----------------- 65 (106)
T ss_dssp SCSSCCCCBEECCSSSCSSCS------STHHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTTC-----------------
T ss_pred CccccCcEEEEcCCCccchhh------hHHHHHHHHHHhcCcEEhhhCcccccCCeEEEeCCC-----------------
Confidence 457999999999854321111 12578999999999999999873 22 44442211
Q ss_pred hhhccCCccEEeccchHHHHHHcCCccCCCCCCCCCCC
Q 001082 878 KHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTG 915 (1160)
Q Consensus 878 ~~~~~~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~v~~~~ 915 (1160)
...+.+|++.+|.+|+..+++++-++|+++...
T Consensus 66 -----~t~LpTVtpTYI~aC~~~nTLLnv~~YLvp~d~ 98 (106)
T 2l42_A 66 -----HTNLPTVTPTYIKACCQSNSLLNMENYLVPYDN 98 (106)
T ss_dssp -----CCSSSBCCTTHHHHHHHSTTSCGGGGCCBCSCC
T ss_pred -----CCCCccccHHHHHHHHhcCceecccccccCchh
Confidence 235678999999999999999999999998765
No 85
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=97.30 E-value=0.00018 Score=80.75 Aligned_cols=173 Identities=19% Similarity=0.171 Sum_probs=104.3
Q ss_pred CcEEEEEecceEEEEEEEeCC-EEEEEeC----CCCCCCcchhhHHHHHHHhcc-cCceeeeeeEEEEeCC---------
Q 001082 245 KEVVIECKFDGDRIQIHKNGS-EIHYFSR----SFLDHSEYGHAMSKIIEQNVL-VDRCILDGEMLVWDTS--------- 309 (1160)
Q Consensus 245 ~~~~vE~K~DGeR~qih~~g~-~v~~fSR----~g~d~t~~~p~l~~~l~~~~~-~~~~ILDGElv~~d~~--------- 309 (1160)
-.|++|+|+||..+.+.+.+| -++..|| .|+|+|.-...|... -..+. +..+.+-||++.-...
T Consensus 107 ~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~I-P~~L~~p~~levRGEv~m~~~~F~~lN~~~~ 185 (318)
T 1b04_A 107 AAYVCELAIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSL-PLRLKEPVSLEARGEAFMPKASFLRLNEERK 185 (318)
T ss_dssp CCEEEEEEESSEEEEEEEETTEEEEEEECTTSSCEEBCHHHHHTCTTS-CSBCSSCCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred ceEEEEEecccEEEEEEEECCEEEEEEccCCCcccHHHHHhHHHhcCC-CcccCCCCeEEEEEEEEEEHHHHHHHHHHHH
Confidence 359999999999999999877 5789999 788888632221110 00111 3458899999873210
Q ss_pred -CCcccccccHHHHH-HHhccCCCC---CCccEEEEEEeeeeeCCcccccCCHHHHHHHHHHhhcCCCCcceeeccCCCC
Q 001082 310 -LNRFAEFGSNQEIA-KAARDGLSS---DRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGL 384 (1160)
Q Consensus 310 -~~~~~pF~~lq~i~-~~~r~~~~~---~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~~ 384 (1160)
.| -.+|..-+..+ ...|. .++ ...++.|++|++...+|.. -.+..++.+.|..+--++...
T Consensus 186 ~~g-~~~faNpRNaAAGsLrq-ld~~ita~R~L~ff~y~~~~~~~~~--~~t~~e~l~~L~~~Gf~v~~~---------- 251 (318)
T 1b04_A 186 ARG-EELFANPRNAAAGSLRQ-LDPKVAASRQLDLFVYGLADAEALG--IASHSEALDYLQALGFKVNPE---------- 251 (318)
T ss_dssp HC---CCCSCHHHHHHHHHHS-SCHHHHHHTCCEEEEEEETTTTTTT--CCBHHHHHHHHHHTTCCCCTT----------
T ss_pred HcC-CCccchhhHHHHHHHHc-cChhhHhhCCCEEEEEecccccCCC--CCCHHHHHHHHHHcCCCCCCc----------
Confidence 00 01232212111 11111 111 0124999999995433422 268999999999875333211
Q ss_pred CccccCCCCCccceecCCHHHHHHHHHHHHH------cCCceEEEecCCCCCcC----CCCCCCe---EEEcc
Q 001082 385 NSHVRPQGEPCWSLVAHNVDEVEKFFKETIE------NRDEGIVLKDLGSKWEP----GDRSGKW---LKLKP 444 (1160)
Q Consensus 385 ~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~------~g~EGlVlK~~ds~Y~p----GkRs~~W---lKlKp 444 (1160)
...+.+.+++.++++.+.+ -.-.|||+|--+..|.. ..|.+.| +|+.+
T Consensus 252 ------------~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~t~k~PRWAiA~Kfpa 312 (318)
T 1b04_A 252 ------------RRRCANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDSFAQQRALGATAKSPRWAIAYKFPA 312 (318)
T ss_dssp ------------CEEESSHHHHHHHHHHHHHHSTTCSSCEEEEEEEECBHHHHHHHCCCSSSCTTEEEEECCC
T ss_pred ------------ceEeCCHHHHHHHHHHHHHHHhhCCCCCCcEEEEecCHHHHHHhCCcCCCCCceeeecCCc
Confidence 2346789999999998765 35689999976655542 3466777 45544
No 86
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=97.23 E-value=0.0026 Score=68.23 Aligned_cols=174 Identities=13% Similarity=0.132 Sum_probs=104.1
Q ss_pred EcCCCCCChHHHH-HHHHHcCCEEEecCCC--CceEEEEecC-CChhhHhhhcCCC---eeecchHHHHHhc---Cc---
Q 001082 666 VNVPPAYSLDSLH-KMVVENGGTFSMNLNN--SVTHCVAADN-KGLKYEAAKRRGD---VIHYSWVLDCCSQ---KK--- 732 (1160)
Q Consensus 666 v~~~~~~~k~eLe-klI~~~GG~iv~n~~~--s~Th~Ia~~~-~~~K~~~a~~~~~---VV~p~WV~dCi~~---~~--- 732 (1160)
+.|+....+++.. +.+...|=.++++... .++|+||-.. .|.||-.+...+| ||+|+||.+|++. |.
T Consensus 27 ~TGc~~~~~~~~D~~~Lr~LGI~Iv~d~~~~~~~n~LiAPkilRT~KFL~sLa~~P~~~il~p~FI~~~Lk~ih~~~~~~ 106 (256)
T 3t7k_A 27 CTGCFHDGFNEVDIEILNQLGIKIFDNIKETDKLNCIFAPKILRTEKFLKSLSFEPLKFALKPEFIIDLLKQIHSKKDKL 106 (256)
T ss_dssp ESSSCSSCCCHHHHHHHHHTTEEECSSCCGGGCCCEEECSSCCCBHHHHHHTTSTTCCEEECTHHHHHHHHHHC------
T ss_pred ecCCcccccCHHHHHHHHHcCeEEEecCcccCCCCEEEcCchhhHHHHHHHhccCccceEeCHHHHHHHHHHhhcCCccc
Confidence 3444312344443 3557788888888742 4888886332 6888887777765 9999999999987 76
Q ss_pred ---cCCCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhhHHhhhcCCCCCCccCCCe--
Q 001082 733 ---LLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGC-- 807 (1160)
Q Consensus 733 ---lLp~~p~~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~~~s~~~~~i~~l~~~~~~~~~~~lF~gc-- 807 (1160)
++++++|.+ .+++.+.+ .+ . ..+..||.++
T Consensus 107 ~~~~l~~~dY~L-----------------------~d~~~E~l----~r-~-----------------~~~gkLf~~~~I 141 (256)
T 3t7k_A 107 SQININLFDYEI-----------------------NGINESII----SK-T-----------------KLPTKVFERANI 141 (256)
T ss_dssp -CCCCCSSTTBC-----------------------TTCCHHHH----HH-T-----------------TSSSCHHHHTTC
T ss_pred ccccCChhhccC-----------------------CCcchhHH----hh-h-----------------ccccccccCCcc
Confidence 666665421 12222222 11 1 1246689998
Q ss_pred -EEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-------C--------------ceEEEEecCCCcccc
Q 001082 808 -CIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-------N--------------ATHVVVLSVLGYDVN 865 (1160)
Q Consensus 808 -~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-------~--------------vTHVVV~~~~~~~~~ 865 (1160)
+|++...-+.. .+.++.+++.|||.=++.+. + ..+|++....+ .
T Consensus 142 ~ciNls~dI~GG-----------~e~issIleahG~~~~~~l~~~~~~~~dl~~n~~~~~~~~~~~~~ILia~K~~---q 207 (256)
T 3t7k_A 142 RCINLVNDIPGG-----------VDTIGSVLKAHGIEKINVLRSKKCTFEDIIPNDVSKQENGGIFKYVLIVTKAS---Q 207 (256)
T ss_dssp CEEEEETTCTTC-----------HHHHHHHHHHTTCCEEEEECTTTCCGGGCCCCC--------CCSEEEECSCHH---H
T ss_pred eeeeeccCCCCC-----------HHHHHHHHHHcCCceeeecccccccHHHhhhccccccccCCCCCEEEEEccHH---H
Confidence 66667643311 35788899999996443221 1 34777765321 1
Q ss_pred hhhhHHHHHHHhhhhccCCccEEeccchHHHHHHcCC
Q 001082 866 FNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQ 902 (1160)
Q Consensus 866 ~~~l~~~l~~~~~~~~~~~~~~VVs~~Wl~~ci~~~~ 902 (1160)
.+.+++.+. ....+...-+|..+|...||....
T Consensus 208 ~k~Fkk~~~----~~~~n~~~lvveWdWCVksIF~le 240 (256)
T 3t7k_A 208 VKKFTKLIN----DRDKNETILIVEWNWCVESIFHLN 240 (256)
T ss_dssp HHHHHHHHH----HHSTTSCEEEECHHHHHHHHHTTS
T ss_pred HHHHHHHhh----cccccceEEEEEcHHHHHHHhhee
Confidence 222222222 112346789999999999998764
No 87
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae}
Probab=97.11 E-value=0.0015 Score=73.20 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=92.6
Q ss_pred CCCcEEEEEecceEEEEEEEeCCE-EEEEeCC----CCCCCcchhhHHHHHHHhc-ccCceeeeeeEEEEeCC-------
Q 001082 243 HGKEVVIECKFDGDRIQIHKNGSE-IHYFSRS----FLDHSEYGHAMSKIIEQNV-LVDRCILDGEMLVWDTS------- 309 (1160)
Q Consensus 243 ~~~~~~vE~K~DGeR~qih~~g~~-v~~fSR~----g~d~t~~~p~l~~~l~~~~-~~~~~ILDGElv~~d~~------- 309 (1160)
....|++|+|+||.-+.+.+.+|. ++.+||. |.|+|+....+.. |-..+ ....+.+=||++.-...
T Consensus 100 ~~~~~~~epKiDGlavsL~Y~~G~L~~a~TRGDG~~GeDiT~n~~tI~~-IP~~l~~~~~levRGEv~m~~~~F~~~n~~ 178 (305)
T 4glw_A 100 AHPTYICELKIDGLSISLTYEKGILVAGVTRGDGSIGENITENLKRVKD-IPLTLPEELDITVRGECYMPRASFDQVNQA 178 (305)
T ss_dssp SSCCEEEEEEECSEEEEEEEETTEEEEEEECTTSSEEEECHHHHTTSTT-SCSBCSSCCCEEEEEEEECCHHHHHHHHHH
T ss_pred CCCcEEEEeeecceEEEEEEeCCeEEEEEecCCCcchhhHHHHHhhccC-CcccCCCcccccccceEEeehhhHHHHHHH
Confidence 446799999999999998887775 7899998 7888852211110 00011 13467889999862110
Q ss_pred ---CCcccccccHHHHHH-HhccCCCC---CCccEEEEEEeeeeeCCcccccCCHHHHHHHHHHhhcCCCCcceeeccCC
Q 001082 310 ---LNRFAEFGSNQEIAK-AARDGLSS---DRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDH 382 (1160)
Q Consensus 310 ---~~~~~pF~~lq~i~~-~~r~~~~~---~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~ 382 (1160)
.+ -.+|..-+..+. ..+. .++ ...++.|++|++...+|. ....++.+.|.++-=++..
T Consensus 179 ~~~~g-~~~faNpRNaaAGslrq-~d~~~~~~r~L~f~~y~~~~~~~~----~s~~e~l~~L~~~Gf~~~~--------- 243 (305)
T 4glw_A 179 RQENG-EPEFANPRNAAAGTLRQ-LDTAVVAKRNLATFLYQEASPSTR----DSQEKGLKYLEQLGFVVNP--------- 243 (305)
T ss_dssp HHHTT-CCCCSSHHHHHHHHHSS-SBHHHHHHSCCEEEEEEESSSCSS----SBHHHHHHHHHHHTCCCCC---------
T ss_pred HHhcC-CccchhhhHHHhhhhhc-cCchhhhhhcceEEEeeecccccc----chHHHHHHHHHhCCCccCC---------
Confidence 00 013322222211 1111 111 112389999998866653 3678899999887322211
Q ss_pred CCCccccCCCCCccceecCCHHHHHHHHHHHHHcC------CceEEEecCC
Q 001082 383 GLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENR------DEGIVLKDLG 427 (1160)
Q Consensus 383 ~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g------~EGlVlK~~d 427 (1160)
....+.+.+++.+++++....+ -.|||+|--+
T Consensus 244 -------------~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGiVikvn~ 281 (305)
T 4glw_A 244 -------------KRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVND 281 (305)
T ss_dssp -------------CCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEECB
T ss_pred -------------ceEEeCCHHHHHHHHHHHHHHhhcCCCCCCeEEEEEeC
Confidence 1235678899999988876532 2399999433
No 88
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=96.94 E-value=0.0021 Score=77.92 Aligned_cols=225 Identities=17% Similarity=0.228 Sum_probs=126.9
Q ss_pred CcEEEEEecceEEEEEEEeCCE-EEEEeCC----CCCCCcchhhHHHHHHHhc----ccCceeeeeeEEEEeCC------
Q 001082 245 KEVVIECKFDGDRIQIHKNGSE-IHYFSRS----FLDHSEYGHAMSKIIEQNV----LVDRCILDGEMLVWDTS------ 309 (1160)
Q Consensus 245 ~~~~vE~K~DGeR~qih~~g~~-v~~fSR~----g~d~t~~~p~l~~~l~~~~----~~~~~ILDGElv~~d~~------ 309 (1160)
..|++|+|+||.-+.+.+.+|. ++..||. |.|+|+....+.. +...+ .+..+.+=||++.-...
T Consensus 108 ~~~~~epKiDGlavsL~Ye~G~Lv~a~TRGDG~~GeDiT~nvrtI~~-IPl~l~~~~~p~~leVRGEv~m~~~~F~~ln~ 186 (586)
T 4glx_A 108 VTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRA-IPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186 (586)
T ss_dssp -CEEEEEEESSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHTTCTT-SCSBCCSSSCCSEEEEEEEEECCHHHHHHHHH
T ss_pred ceEEEEEeecceEEEEEEeCCEEEEEEccCCCcccccHHHHHHhccC-cccccccCCCCceEEEEEEEEEEhhhccccch
Confidence 4689999999999999888776 7899994 7788752111110 00001 13457788999862110
Q ss_pred ----CCcccccccHHHHHHHhccCCCC---CCccEEEEEEeeeeeCCcccccCCHHHHHHHHHHhhcCCCCcceeeccCC
Q 001082 310 ----LNRFAEFGSNQEIAKAARDGLSS---DRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDH 382 (1160)
Q Consensus 310 ----~~~~~pF~~lq~i~~~~r~~~~~---~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~ 382 (1160)
.+ -.+|..-+..+...-...++ ...++.|++|++...+|..+. ....++.+.|.++-=++..
T Consensus 187 ~~~~~g-~~~faNpRNaaAGslrqld~~~~a~r~L~f~~y~v~~~~~~~~~-~t~~e~l~~L~~~Gf~v~~--------- 255 (586)
T 4glx_A 187 DARRTG-GKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELP-DTHLGRLLQFKKWGLPVSD--------- 255 (586)
T ss_dssp HHHHTT-CCCCSCHHHHHHHHHTCSCHHHHHTSCCEEEEEEEEEEESSCCC-SBHHHHHHHHHHTTCCCCT---------
T ss_pred hhhhcc-CccchhhHHHHhccccccchhhhhccccceeEeeeeeeeccccc-ccHHHHHHHHHHcCCCCcc---------
Confidence 00 01232222221111011111 112489999999888775432 4678899999886322211
Q ss_pred CCCccccCCCCCccceecCCHHHHHHHHHHHHHcC------CceEEEecCCCCCcC--C--CCCCCe---EEEccccccC
Q 001082 383 GLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENR------DEGIVLKDLGSKWEP--G--DRSGKW---LKLKPEYIRA 449 (1160)
Q Consensus 383 ~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g------~EGlVlK~~ds~Y~p--G--kRs~~W---lKlKpey~~~ 449 (1160)
....+.+.+++.++++.....+ -.|||+|--+-.+.. | .+++.| +|+.++
T Consensus 256 -------------~~~~~~~~~~~~~~~~~~~~~R~~l~y~iDGiVikvn~~~~~~~lG~ts~~PrwAiA~Kfp~e---- 318 (586)
T 4glx_A 256 -------------RVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARAPRWAVAFKFPAQ---- 318 (586)
T ss_dssp -------------TCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEECCCCC----
T ss_pred -------------ceeeeccHHHHHHHHHHHHHhhhcccccCCceEEEecchhhhhccCCccCCCCeeEEEcccch----
Confidence 1234678899999888776543 389999954433321 2 356677 555543
Q ss_pred CCcccEEEEEEEecCCCCCCccceEEEEEecCCCCCCCCceEEEEeeecCCCCHHHHHHH
Q 001082 450 GSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAV 509 (1160)
Q Consensus 450 g~~lDlvVIG~~~G~Grr~g~~gsfllg~~d~~~~~~~~~~f~sv~kVgtG~sdeel~~l 509 (1160)
..--.|.+..|.-|| .|.+.-. |..++-.- .+. +|.+ .|..+.++.+++
T Consensus 319 --~~~T~v~~I~~qVGR-TG~iTPv--A~lePV~l---~G~--tVsr-aTLhN~~~I~~~ 367 (586)
T 4glx_A 319 --EQMTFVRDVEFQVGR-TGAITPV--ARLEPVHV---AGV--LVSN-ATLHNADEIERL 367 (586)
T ss_dssp --EEEEEEEEEEEEECT-TSBEEEE--EEEEEEEE---TTE--EEEE-EECCCHHHHHHH
T ss_pred --hheeEeEEEEEecCC-ceEEEEE--EEEeeEEe---CCE--EEEe-cccCCHHHHHhc
Confidence 455677777787765 4444332 22222100 012 3444 377888887765
No 89
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=96.73 E-value=0.0024 Score=58.88 Aligned_cols=76 Identities=13% Similarity=0.105 Sum_probs=58.2
Q ss_pred CCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhh
Q 001082 800 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREK 878 (1160)
Q Consensus 800 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~ 878 (1160)
+...|.|.+|+|.|.... . ++.++.+|..+||++...++ .++|+|+.+..+. .++ +.
T Consensus 4 ~~~~l~G~~~v~TG~l~~---~--------R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gs--K~~---kA------ 61 (92)
T 1l7b_A 4 GGEALKGLTFVITGELSR---P--------REEVKALLRRLGAKVTDSVSRKTSYLVVGENPGS--KLE---KA------ 61 (92)
T ss_dssp CCCSSTTCEEECSTTTTS---C--------HHHHHHHHHHTTCEEESCCSSSCCCBEECSSSST--THH---HH------
T ss_pred CCCCcCCcEEEEecCCCC---C--------HHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCCh--HHH---HH------
Confidence 345699999999997531 2 46888999999999999999 5999999875532 222 11
Q ss_pred hhccCCccEEeccchHHHHHHc
Q 001082 879 HLLWNKKLHVVRSQWLEDCLAK 900 (1160)
Q Consensus 879 ~~~~~~~~~VVs~~Wl~~ci~~ 900 (1160)
....++||+.+|+.+++..
T Consensus 62 ---~~lgI~Ii~E~~f~~~l~~ 80 (92)
T 1l7b_A 62 ---RALGVPTLTEEELYRLLEA 80 (92)
T ss_dssp ---HCSSSCCEEHHHHHHHHHH
T ss_pred ---HHcCCcEEeHHHHHHHHHh
Confidence 1356899999999999874
No 90
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=96.63 E-value=0.00013 Score=82.26 Aligned_cols=168 Identities=15% Similarity=0.150 Sum_probs=100.6
Q ss_pred CcEEEEEecceEEEEEEEeCC-EEEEEeC----CCCCCCcchhhHHHHHHHhc-------ccCceeeeeeEEEEeCC---
Q 001082 245 KEVVIECKFDGDRIQIHKNGS-EIHYFSR----SFLDHSEYGHAMSKIIEQNV-------LVDRCILDGEMLVWDTS--- 309 (1160)
Q Consensus 245 ~~~~vE~K~DGeR~qih~~g~-~v~~fSR----~g~d~t~~~p~l~~~l~~~~-------~~~~~ILDGElv~~d~~--- 309 (1160)
..|++|+|+||..+.+.+.+| -++..|| .|+|+|.-...|.. |-..+ .+..+.+-||++.-...
T Consensus 116 ~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IP~~L~~g~~~~~p~~leVRGEv~m~~~~F~~ 194 (328)
T 1zau_A 116 AHYLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIAD-VPERLTPGDDYPVPEVLEVRGEVFFRLDDFQA 194 (328)
T ss_dssp SCEEEEEEECSEEEEEECGGGBCCBCBBCTTSSEECBCHHHHHHSSS-CCSBCCCBTTBCCCSCCEEEEEEBCCHHHHHH
T ss_pred cceEEeeecceEEEEEEEECCEEEEEEccCCCcccHHHHHHHHHhcC-CChhhccCCcCCCCCeEEEEEEEEEEHHHHHH
Confidence 369999999999999999776 4789999 68888863222111 00011 02337899999864210
Q ss_pred -------CCcccccccHHHHHH-HhccCCCCC---CccEEEEEEeeeeeCCcccccCCHHHHHHHHHHhhcCCCCcceee
Q 001082 310 -------LNRFAEFGSNQEIAK-AARDGLSSD---RQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETL 378 (1160)
Q Consensus 310 -------~~~~~pF~~lq~i~~-~~r~~~~~~---~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~ 378 (1160)
.| -.+|..-+..+. ..|. .++. ..++.|++|+|...++.. -.+..++.+.|..+-=++..
T Consensus 195 lN~~~~~~g-~~~faNPRNaAAGsLrq-ld~~ita~R~L~f~~y~i~~~~~~~--~~t~~e~l~~L~~~Gf~v~~----- 265 (328)
T 1zau_A 195 LNASLVEEG-KAPFANPRNSAAGSLRQ-KDPAVTARRRLRMICHGLGHVEGFR--PATLHQAYLALRAWGLPVSE----- 265 (328)
T ss_dssp HHHSCSSTT-SCCCSSHHHHHHHHHTC-SSHHHHHHSCCBCCCCBCCCCSSCC--CSBHHHHHHHHHTTTCCCCC-----
T ss_pred HHHHHHHcC-CccccChHHHHHHHHHc-cChhhhhcCcceEEEEeccccCCCC--CCCHHHHHHHHHHcCCCCCC-----
Confidence 01 124433222211 1111 1111 123889999996545432 25788999999887433211
Q ss_pred ccCCCCCccccCCCCCccceecCCHHHHHHHHHHHHHc------CCceEEEecCCCCCcC----CCCCCCe
Q 001082 379 VPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIEN------RDEGIVLKDLGSKWEP----GDRSGKW 439 (1160)
Q Consensus 379 ~p~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~------g~EGlVlK~~ds~Y~p----GkRs~~W 439 (1160)
....+.+.+++.++++.+.+. .-.|||+|--+..|.. ..|.+.|
T Consensus 266 -----------------~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~t~k~PRW 319 (328)
T 1zau_A 266 -----------------HTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRW 319 (328)
T ss_dssp -----------------CCCCBCHHHHHHHHHHHTTTTCSSCSSCEEEEEEEECBHHHHTTSCBCSSSBSS
T ss_pred -----------------ceEEeCCHHHHHHHHHHHHHHHhcCCCCCceEEEEecCHHHHHHhCccCCCCCc
Confidence 122456789999999988655 5589999966555432 2355666
No 91
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=96.55 E-value=0.0042 Score=69.84 Aligned_cols=158 Identities=20% Similarity=0.217 Sum_probs=93.9
Q ss_pred cEEEEEecceEEEEEEEeCCE-EEEEeCC----CCCCCcchhhHHHHHHHhcc----cCceeeeeeEEEEeCC-------
Q 001082 246 EVVIECKFDGDRIQIHKNGSE-IHYFSRS----FLDHSEYGHAMSKIIEQNVL----VDRCILDGEMLVWDTS------- 309 (1160)
Q Consensus 246 ~~~vE~K~DGeR~qih~~g~~-v~~fSR~----g~d~t~~~p~l~~~l~~~~~----~~~~ILDGElv~~d~~------- 309 (1160)
.|++|+|+||.-+.+.+.+|. ++..||. |+|+|.-...|.. |-..+. +..+.+=||++.-...
T Consensus 108 ~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IPl~L~~~~~p~~leVRGEv~m~~~~F~~lN~~ 186 (322)
T 3uq8_A 108 TFCCEPKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRN-VPLQLLTDNPPARLEVRGEVFMPHAGFERLNKY 186 (322)
T ss_dssp EEEEEEEESSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHHTCTT-SCSBCSCSSCCSEEEEEEEEECCHHHHHHHHHH
T ss_pred eEEEEEeeceEEEEEEEeCCEEEEEEecCCCccchhHHHHHHHhcC-CCccccCCCCCceEEEEEEEEeeHHHHHHHHHH
Confidence 599999999999999887775 7899994 7788753211110 000111 3457788998863210
Q ss_pred ---CCcccccccHHHHHH-HhccCCCC---CCccEEEEEEeeeeeCCcccccCCHHHHHHHHHHhhcCCCCcceeeccCC
Q 001082 310 ---LNRFAEFGSNQEIAK-AARDGLSS---DRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDH 382 (1160)
Q Consensus 310 ---~~~~~pF~~lq~i~~-~~r~~~~~---~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~ 382 (1160)
.| -.+|..-+..+. ..| ..++ ...++.|++|.+...+|..+ .....++.+.|..+-=++..
T Consensus 187 ~~~~g-~~~faNPRNaAAGsLR-qld~~ita~R~L~ff~y~~~~~~~~~~-~~t~~e~l~~L~~~Gf~v~~--------- 254 (322)
T 3uq8_A 187 ALEHN-EKTFANPRNAAAGSLR-QLDPNITSKRPLVLNAYGIGIAEGVDL-PTTHYARLQWLKSIGIPVNP--------- 254 (322)
T ss_dssp HHHTT-CCCCSSHHHHHHHHHT-CSCHHHHTTSCCEEEEEEEEEEESCCC-CSBHHHHHHHHHHTTCCCCT---------
T ss_pred HHHhC-CccccchhHHHHHHHh-hcChhhhhcCccEEEEEeccccCCCCC-CCCHHHHHHHHHHcCCCCCC---------
Confidence 00 023322122111 111 1111 12249999999987665432 35788999999887322211
Q ss_pred CCCccccCCCCCccceecCCHHHHHHHHHHHHHcC------CceEEEecCCCC
Q 001082 383 GLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENR------DEGIVLKDLGSK 429 (1160)
Q Consensus 383 ~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g------~EGlVlK~~ds~ 429 (1160)
....+.+.+++.++++...+.+ -.|||+|--+-.
T Consensus 255 -------------~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~ 294 (322)
T 3uq8_A 255 -------------EIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 294 (322)
T ss_dssp -------------TCEEEESHHHHHHHHHHHHHTTTTTSSCEEEEEEEESBHH
T ss_pred -------------CcEEeCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCHH
Confidence 1235678999999999886544 369999854433
No 92
>1xk5_A Snurportin-1; protein-RNA-complex, transport protein; HET: TPG; 2.40A {Homo sapiens}
Probab=96.50 E-value=0.0083 Score=62.90 Aligned_cols=179 Identities=12% Similarity=0.105 Sum_probs=118.5
Q ss_pred ccccccccCChHHHHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEeCCCCCCC---cchhhHHHHHHHhcccCceeeee
Q 001082 225 RPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHS---EYGHAMSKIIEQNVLVDRCILDG 301 (1160)
Q Consensus 225 ~PmLA~~~~~~~~~~~~~~~~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~t---~~~p~l~~~l~~~~~~~~~ILDG 301 (1160)
+.||++-..++++-+. .+|++=+===|-||+|+...|....++|+|..+. ..+|+=... ..-...-+|||+
T Consensus 5 ~lmlsEWl~diP~dl~----~~Wl~vp~P~GkRcLvva~~G~T~~~~k~G~~~~~F~S~LPgG~~~--~~~~~~~tILDC 78 (204)
T 1xk5_A 5 QLMLSEWLIDVPSDLG----QEWIVVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRR--NSTAKDYTILDC 78 (204)
T ss_dssp CSEEEEECCSCCTTHH----HHEEEEEEESSEEEEEEEETTEEEEECTTSCEEEEECCSSSSSCSS--SCCTTCCEEEEE
T ss_pred chhhhhhcccCCCccC----CCeEEEECCCCcEEEEEecCCeEEEECCCCcEEEEEcccCCCCCcc--cCCCCCCEEEEE
Confidence 5688887766654332 3688888888999999999999999999998753 223320000 000124689998
Q ss_pred eEEEEeCCCCcccccccHHHHHHHhccCCCCCCccEEEEEEeeeeeCCcccccCCHHHHHHHHHHhhcCCCCcceeeccC
Q 001082 302 EMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPD 381 (1160)
Q Consensus 302 Elv~~d~~~~~~~pF~~lq~i~~~~r~~~~~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~ 381 (1160)
= |++. . -+|+|.|||..||.++.+-..+-|.--|++-+.+.++--+.- ..
T Consensus 79 I---~~e~-------------------------~-~tyYVLDvl~W~g~~l~dcetefRffWl~skl~E~~~l~~~s-~~ 128 (204)
T 1xk5_A 79 I---YNEV-------------------------N-QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKT-KL 128 (204)
T ss_dssp E---EEGG-------------------------G-TEEEEEEEEEETTEECTTSCHHHHHHHHHHHTTTSTTTTSCB-TT
T ss_pred E---EecC-------------------------C-cEEEEEEEEEECCceeecCcHHHHHHHHHHHhcccccccccc-cc
Confidence 3 3321 0 249999999999999999999999999999887754211100 00
Q ss_pred CCCCccccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEccccc
Q 001082 382 HGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYI 447 (1160)
Q Consensus 382 ~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKlKpey~ 447 (1160)
....+. + ...+.+ +.+.+.+++.....--..|+.+=..++.|.+|. ++-+.=+||..+
T Consensus 129 n~~~f~--~----lp~~~c-~~~~l~~~~~~~~~~~~DGlLFyHK~a~Y~~G~-TPLv~WLkp~ml 186 (204)
T 1xk5_A 129 NPFKFV--G----LKNFPC-TPESLCDVLSMDFPFEVDGLLFYHKQTHYSPGS-TPLVGWLRPYMV 186 (204)
T ss_dssp BSSEEE--E----CCEEEC-SHHHHHHHHTCCCSSCEEEEEEEESSCCCCSEE-EEEEEEECGGGH
T ss_pred CCcceE--e----cccccC-CHHHHHHHHccCCCCCcceEEEEeccccccCCC-CChhhhcchhhc
Confidence 000000 0 112333 467777777655567789999999999999995 554333577644
No 93
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=96.35 E-value=0.0047 Score=69.28 Aligned_cols=175 Identities=20% Similarity=0.200 Sum_probs=100.3
Q ss_pred CCcEEEEEecceEEEEEEEeCCE-EEEEeCC----CCCCCcchhhHHHHHHHhc-ccCceeeeeeEEEEeC---------
Q 001082 244 GKEVVIECKFDGDRIQIHKNGSE-IHYFSRS----FLDHSEYGHAMSKIIEQNV-LVDRCILDGEMLVWDT--------- 308 (1160)
Q Consensus 244 ~~~~~vE~K~DGeR~qih~~g~~-v~~fSR~----g~d~t~~~p~l~~~l~~~~-~~~~~ILDGElv~~d~--------- 308 (1160)
.-.|++|+|+||.-+.+.+.+|. ++..||. |+|+|.-...+.. |-..+ ....+.+=||++.--.
T Consensus 104 ~~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IP~~L~~~~~levRGEv~m~~~~F~~lN~~~ 182 (318)
T 3jsl_A 104 NVEYMCELKIDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHA-IPLKMKEPLNVEVRGEAYMPRRSFLRLNEEK 182 (318)
T ss_dssp SCCEEEEEEECSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHTTCTT-SCSBCSSCCCEEEEEEEECCHHHHHHHHHHH
T ss_pred CceEEEEEeecceEEEEEEECCEEEEEEeCCCCccchhHHHHHHHhcC-CccccCCCCcEEEEEEEEEcHHHHHHHHHHH
Confidence 34799999999999999887765 6899994 7788752211110 00011 1235788899886210
Q ss_pred -CCCcccccccHHHHHH-HhccCCCC---CCccEEEEEEeeeeeCCcccccCCHHHHHHHHHHhhcCCCCcceeeccCCC
Q 001082 309 -SLNRFAEFGSNQEIAK-AARDGLSS---DRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHG 383 (1160)
Q Consensus 309 -~~~~~~pF~~lq~i~~-~~r~~~~~---~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~ 383 (1160)
..+ -.+|..-+..+. ..| ..++ ...++.|++|.+...+|.. -....++.+.|.++-=++..
T Consensus 183 ~~~g-~~~faNPRNaAAGsLR-qld~~ita~R~L~ff~y~~~~~~~~~--~~t~~e~l~~L~~~GF~v~~---------- 248 (318)
T 3jsl_A 183 EKND-EQLFANPRNAAAGSLR-QLDSKLTAKRKLSVFIYSVNDFTDFN--ARSQSEALDELDKLGFTTNK---------- 248 (318)
T ss_dssp BTTB-CCCCSSHHHHHHHHHS-CSCHHHHHHSCCEEEEEEESCCTTCC--CSBHHHHHHHHHHHTCCCCT----------
T ss_pred HHhC-CccccChHHHHHHHHH-ccChhhhhhCcceEEEEecccccCCC--CCCHHHHHHHHHHCCCCcCC----------
Confidence 001 023433222211 111 1111 0123999999998766533 24788999999887322211
Q ss_pred CCccccCCCCCccceecCCHHHHHHHHHHHHH------cCCceEEEecCCCCCc----CCCCCCCe---EEEccc
Q 001082 384 LNSHVRPQGEPCWSLVAHNVDEVEKFFKETIE------NRDEGIVLKDLGSKWE----PGDRSGKW---LKLKPE 445 (1160)
Q Consensus 384 ~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~------~g~EGlVlK~~ds~Y~----pGkRs~~W---lKlKpe 445 (1160)
....+.+.+++.++++...+ ---.|||+|--+-.+. ...|.+.| +|+.++
T Consensus 249 ------------~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~t~k~PRWAiAyKfp~~ 311 (318)
T 3jsl_A 249 ------------NRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFTQKSPRWAIAYKFPAE 311 (318)
T ss_dssp ------------TCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBTTEEEEECC--
T ss_pred ------------cceEeCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCHHHHHHhCCCCCCCCceEEECCCCc
Confidence 12346789999999988743 2347999995543322 11345556 555553
No 94
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=96.27 E-value=0.011 Score=56.19 Aligned_cols=78 Identities=17% Similarity=0.166 Sum_probs=57.7
Q ss_pred CccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhhh
Q 001082 801 WSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKH 879 (1160)
Q Consensus 801 ~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~ 879 (1160)
...|.|.+|+|.|..... .++.++.+|+.+||+++..++ .++|||+++..+. ..+.+..
T Consensus 30 ~~~l~G~~~v~TG~l~~~----------~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~----sK~~kA~------ 89 (109)
T 2k6g_A 30 ENCLEGLIFVITGVLESI----------ERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ----SKSDKAA------ 89 (109)
T ss_dssp TTTTTTCEEEEESBCSSC----------CHHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCH----HHHHHHH------
T ss_pred CCCCCCCEEEEeeeCCCC----------CHHHHHHHHHHcCCEeeCcccCCceEEEECCCCCh----HHHHHHH------
Confidence 346999999999975321 246788999999999999999 5999999875431 1122111
Q ss_pred hccCCccEEeccchHHHHHHcC
Q 001082 880 LLWNKKLHVVRSQWLEDCLAKE 901 (1160)
Q Consensus 880 ~~~~~~~~VVs~~Wl~~ci~~~ 901 (1160)
...++||+.+|+.+++..+
T Consensus 90 ---~lgI~Ii~E~~f~~ll~~~ 108 (109)
T 2k6g_A 90 ---ALGTKIIDEDGLLNLIRNL 108 (109)
T ss_dssp ---HHTCEEECHHHHHHHHHHT
T ss_pred ---HcCCeEEeHHHHHHHHHhC
Confidence 2358999999999998764
No 95
>2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase, ATP-binding; HET: APC; 2.21A {Bacteriophage T4}
Probab=96.25 E-value=0.024 Score=65.43 Aligned_cols=142 Identities=13% Similarity=0.098 Sum_probs=87.2
Q ss_pred CcEEEEEecceEEEEEEEeCCEEEEEeCCCCCCCc--chhh---------HHHHHHHhcccCceeeeeeEEEEeCCCCcc
Q 001082 245 KEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE--YGHA---------MSKIIEQNVLVDRCILDGEMLVWDTSLNRF 313 (1160)
Q Consensus 245 ~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~t~--~~p~---------l~~~l~~~~~~~~~ILDGElv~~d~~~~~~ 313 (1160)
.++.+++|+||.=+.+...+|++.+.||++..... .... +.+.+ ..+...++.+-||++. +...-+
T Consensus 93 ~pv~V~eK~DGslv~~~~~~G~l~~~SKgs~~~~~a~~~~~~l~~~~~~~l~~~~-~~l~~~~~t~~fE~~~--pen~hV 169 (375)
T 2c5u_A 93 DVDYILTKEDGSLVSTYLDGDEILFKSKGSIKSEQALMANGILMNINHHRLRDRL-KELAEDGFTANFEFVA--PTNRIV 169 (375)
T ss_dssp GEEEEEEECCSEEEEEEEETTEEEEEETTBSSSHHHHHHHHHHHSGGGHHHHHHH-HHHHHTTEEEEEEEEC--TTSCSS
T ss_pred CCEEEEEecCCeEEEEEEECCEEEEEeCCCCCChHHHHHHHHHhhhcchHHHHHH-HHhcCCCCEEEEEEcC--CCCcee
Confidence 47999999999998777889999999999976432 0111 11111 1123578999999987 221112
Q ss_pred cccccHHHHHHHhccCCCCCCccEEEEEEeeeeeC-CcccccCCHHHHHHHHHHhhcCCCCcceeeccCCCCCccccCCC
Q 001082 314 AEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVG-DTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQG 392 (1160)
Q Consensus 314 ~pF~~lq~i~~~~r~~~~~~~~~~~~~vFDiL~ln-g~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~~~~~v~~~~ 392 (1160)
+++ + . ..+++|||-.-+ |+- +|+.++.++.+ +--+...
T Consensus 170 l~Y----------------~-~-~~L~L~~i~~n~tg~~---l~~~e~~~~a~-~g~~~V~------------------- 208 (375)
T 2c5u_A 170 LAY----------------Q-E-MKIILLNVRENETGEY---ISYDDIYKDAT-LRPYLVE------------------- 208 (375)
T ss_dssp SCC----------------S-S-CEEEEEEEEETTTCCB---CCHHHHHHCTT-TGGGBCC-------------------
T ss_pred ccC----------------C-C-CCEEEEEEEEcCCCcE---ecHHHHHHHHh-hCCCcCc-------------------
Confidence 222 1 1 459999988754 443 79999876654 2111100
Q ss_pred CCccceecCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEcccc
Q 001082 393 EPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEY 446 (1160)
Q Consensus 393 ~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKlKpey 446 (1160)
++. -+..++.+.... ..+.||+|++..++ .++|+|.++
T Consensus 209 --~~~---~~l~ell~~~~~--~~~~EGfVir~~~g---------~~~K~Kt~~ 246 (375)
T 2c5u_A 209 --RYE---IDSPKWIEEAKN--AENIEGYVAVMKDG---------SHFKIKSDW 246 (375)
T ss_dssp --EEE---CSSTHHHHHHHH--CSSCCEEEEEETTS---------CEEEEECHH
T ss_pred --eee---ccHHHHHHHHhh--CCCCceEEEEecCC---------CEEEEecHH
Confidence 011 112333333322 57899999998742 499999953
No 96
>1xdn_A RNA editing ligase MP52; HET: MSE ATP; 1.20A {Trypanosoma brucei} SCOP: d.142.2.4
Probab=96.19 E-value=0.024 Score=61.70 Aligned_cols=120 Identities=21% Similarity=0.238 Sum_probs=71.5
Q ss_pred CCCcEEEEEecceEEEEEEE--eCCE--EEEEeCCCCC-----CCcc---hhhHHHHHH---Hhc-------ccCceeee
Q 001082 243 HGKEVVIECKFDGDRIQIHK--NGSE--IHYFSRSFLD-----HSEY---GHAMSKIIE---QNV-------LVDRCILD 300 (1160)
Q Consensus 243 ~~~~~~vE~K~DGeR~qih~--~g~~--v~~fSR~g~d-----~t~~---~p~l~~~l~---~~~-------~~~~~ILD 300 (1160)
.+..|++.+|.||--.-+.. +++. +++.||++.- +-.+ .+.+.+.+. +.+ ....+++=
T Consensus 31 ~~~ewvatEKIHGaNFsii~~~d~~~~~i~~akRs~~l~~~e~FfGy~~i~~~l~~~~~~l~~~l~~~~~~~~~~~v~Vy 110 (277)
T 1xdn_A 31 AAQEWVACEKVHGTNFGIYLINQGDHEVVRFAKRSGIMDPNENFFGYHILIDEFTAQIRILNDLLKQKYGLSRVGRLVLN 110 (277)
T ss_dssp GGSCEEEEEECCSEEEEEEEEEETTEEEEEEEETTEECCTTCCCTTGGGGHHHHHHHHHHHHHHHHHHHTCSCCSEEEEE
T ss_pred CCCcEEEEEeeccccEEEEEecCCCeeEEEEeecccccCcccccccHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEE
Confidence 35689999999999998888 6777 9999999742 2221 133322221 111 14789999
Q ss_pred eeEEEEe---CCC-----------CcccccccHHHHHHHhccCCCCCC-ccEEEEEEeeeeeCC---cccccCCHHHHHH
Q 001082 301 GEMLVWD---TSL-----------NRFAEFGSNQEIAKAARDGLSSDR-QVLCYFAFDVLYVGD---TSVIHQSLKERHE 362 (1160)
Q Consensus 301 GElv~~d---~~~-----------~~~~pF~~lq~i~~~~r~~~~~~~-~~~~~~vFDiL~lng---~sl~~~pl~eRr~ 362 (1160)
||+..|. +.. .+..|+.. + ....+.-.+- +.+.|++|||.+.++ ....-++|.+=.+
T Consensus 111 GELfGg~y~hp~v~~~~~~~~~~~~~~~p~~~-~----~IQ~~i~~~Y~p~~~FYaFDI~~~~~~~~~~~~~L~fd~~~~ 185 (277)
T 1xdn_A 111 GELFGAKYKHPLVPKSEKWCTLPNGKKFPIAG-V----QIQREPFPQYSPELHFFAFDIKYSVSGAEEDFVLLGYDEFVE 185 (277)
T ss_dssp EEEEEEECCCTTSCCCCCEEECTTSCEEEGGG-C----CSCCCSSCCCEEEEEEEEEEEEEESSCCGGGEEECCHHHHHH
T ss_pred EEEecCccCCccccccccccccCccccCcccc-c----ccccccccccCCCceEEEEEEEEecCCCccccccCCHHHHHH
Confidence 9999886 110 01112210 0 0111110011 248999999998752 2345689888777
Q ss_pred HHHHh
Q 001082 363 LLQKV 367 (1160)
Q Consensus 363 ~L~~~ 367 (1160)
.+.+.
T Consensus 186 ~~~~~ 190 (277)
T 1xdn_A 186 FSSKV 190 (277)
T ss_dssp HHHTS
T ss_pred HHHHh
Confidence 77764
No 97
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.98 E-value=0.019 Score=54.81 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=57.9
Q ss_pred CccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhhh
Q 001082 801 WSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKH 879 (1160)
Q Consensus 801 ~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~ 879 (1160)
...|.|.+|+|.|..... .++.++.+|+.+||++....+ .++|||+.+..+. ..+++..
T Consensus 20 ~~~l~G~~~v~TG~l~~~----------~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~----sKl~KA~------ 79 (112)
T 2ebu_A 20 ENCLEGLIFVITGVLESI----------ERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ----SKSDKAA------ 79 (112)
T ss_dssp SSSSTTCEEEECSCCSSS----------CHHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCS----HHHHHHH------
T ss_pred CCCcCCCEEEEeeeCCCC----------CHHHHHHHHHHcCCEEeccccCCeeEEEecCCCCh----HHHHHHH------
Confidence 356999999999975321 256888999999999999999 5999999875431 1122211
Q ss_pred hccCCccEEeccchHHHHHHcC
Q 001082 880 LLWNKKLHVVRSQWLEDCLAKE 901 (1160)
Q Consensus 880 ~~~~~~~~VVs~~Wl~~ci~~~ 901 (1160)
...++||+.+|+.+++..+
T Consensus 80 ---~lgI~IisE~~f~~ll~~~ 98 (112)
T 2ebu_A 80 ---ALGTKIIDEDGLLNLIRTM 98 (112)
T ss_dssp ---HHTCEEEEHHHHHHHHHHS
T ss_pred ---HcCCeEEeHHHHHHHHhhC
Confidence 2358999999999999753
No 98
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=95.57 E-value=0.018 Score=70.89 Aligned_cols=193 Identities=18% Similarity=0.241 Sum_probs=114.1
Q ss_pred cEEEEEecceEEEEEEEeCCE-EEEEeCC----CCCCCcchhhHHHHHHHhcc----cCceeeeeeEEEEeCC-------
Q 001082 246 EVVIECKFDGDRIQIHKNGSE-IHYFSRS----FLDHSEYGHAMSKIIEQNVL----VDRCILDGEMLVWDTS------- 309 (1160)
Q Consensus 246 ~~~vE~K~DGeR~qih~~g~~-v~~fSR~----g~d~t~~~p~l~~~l~~~~~----~~~~ILDGElv~~d~~------- 309 (1160)
.|++|+|+||.-+.+.+.+|. ++..||. |+|+|.-...+.. +-..+. +..+.+=||++.-...
T Consensus 109 ~~~~e~KiDGlaisL~Ye~G~Lv~a~TRGDG~~GEdvT~n~rtI~~-IP~~l~~~~~p~~levRGEv~m~~~~F~~lN~~ 187 (671)
T 2owo_A 109 TWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRA-IPLKLHGENIPARLEVRGEVFLPQAGFEKINED 187 (671)
T ss_dssp CEEEEEEESSEEEEEEEETTEEEEEECCTTSSEEEBCHHHHHTCTT-SCSBCCSSSCCSEEEEEEEEECCHHHHHHHHHH
T ss_pred eEEEEEecceEEEEEEEeCCEEEEEEecCCCcchhhHHHHHhhhcC-CCccccCCCCCCeEEEEEEEEEEHHHHHHHHHH
Confidence 699999999999999988775 6789994 6777752211111 000111 2337788998763110
Q ss_pred ---CCcccccccHHHHHH-HhccCCCC---CCccEEEEEEeeeeeCC-cccccCCHHHHHHHHHHhhcCCCCcceeeccC
Q 001082 310 ---LNRFAEFGSNQEIAK-AARDGLSS---DRQVLCYFAFDVLYVGD-TSVIHQSLKERHELLQKVVKPSKGRLETLVPD 381 (1160)
Q Consensus 310 ---~~~~~pF~~lq~i~~-~~r~~~~~---~~~~~~~~vFDiL~lng-~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~ 381 (1160)
.+ -.+|..-+..+. ..| ..++ ...++.|++|++...+| .. -....++.+.|..+-=++...
T Consensus 188 ~~~~g-~~~faNpRNaaAGsLr-qld~~~~a~R~L~~~~y~~~~~~~~~~--~~t~~e~l~~L~~~Gf~v~~~------- 256 (671)
T 2owo_A 188 ARRTG-GKVFANPRNAAAGSLR-QLDPRITAKRPLTFFCYGVGVLEGGEL--PDTHLGRLLQFKKWGLPVSDR------- 256 (671)
T ss_dssp HHHSS-CCCCSCHHHHHHHHHT-CSCHHHHHTSCCEEEEEEEEEEESSCC--CSBHHHHHHHHHHHTCCCCTT-------
T ss_pred HHhcC-CCcccChHHHHHHHHH-hcChhhHhcCCCEEEEEECcccCCCCC--CCCHHHHHHHHHHCCCCCCCc-------
Confidence 00 013332222111 111 1111 12249999999975554 22 257889999999874332211
Q ss_pred CCCCccccCCCCCccceecCCHHHHHHHHHHHHHc------CCceEEEecCCCCCc----CCCCCCCe---EEEcccccc
Q 001082 382 HGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIEN------RDEGIVLKDLGSKWE----PGDRSGKW---LKLKPEYIR 448 (1160)
Q Consensus 382 ~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~------g~EGlVlK~~ds~Y~----pGkRs~~W---lKlKpey~~ 448 (1160)
...+.+.+++.++++.+.+. .-.|||+|--+-.+. ...|.+.| +|+.++
T Consensus 257 ---------------~~~~~~~~~v~~~~~~~~~~R~~l~y~iDGvViKv~~~~~q~~LG~t~k~PrWAiA~Kfpae--- 318 (671)
T 2owo_A 257 ---------------VTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARAPRWAVAFKFPAQ--- 318 (671)
T ss_dssp ---------------CEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEEECCCC---
T ss_pred ---------------ceeeCCHHHHHHHHHHHHHHHhcCCCCCccEEEEecCHHHHHHhCcccCCCCceEEEcCCCc---
Confidence 23467899999999988543 348999996544332 12456777 777775
Q ss_pred CCCcccEEEEEEEecCCCCCCccc
Q 001082 449 AGSDLDVLIIGGYYGSGRRGGEVA 472 (1160)
Q Consensus 449 ~g~~lDlvVIG~~~G~Grr~g~~g 472 (1160)
..--.|.+..|.-|| .|.++
T Consensus 319 ---~~~T~l~~I~~qVGR-TG~iT 338 (671)
T 2owo_A 319 ---EQMTFVRDVEFQVGR-TGAIT 338 (671)
T ss_dssp ---EEEEEEEEEEEEECT-TSBEE
T ss_pred ---eEEEEEEEEEEecCC-Cceee
Confidence 445566777776664 55554
No 99
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=95.57 E-value=0.0021 Score=78.93 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=0.0
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhcCC-CeeecchHHHHHhcCcc
Q 001082 655 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKKL 733 (1160)
Q Consensus 655 s~lF~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia~~~~~~K~~~a~~~~-~VV~p~WV~dCi~~~~l 733 (1160)
...|.|+.||+++.-.. +|++++++|.++||++....+..++++|+++..+-|++.|...+ +||+-+|+++++..+.+
T Consensus 585 ~~~l~G~~~v~TG~l~~-~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~gsKl~KA~~lgI~Ii~E~~f~~~l~~~~~ 663 (667)
T 1dgs_A 585 SDLLSGLTFVLTGELSR-PREEVKALLGRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVAVLTEEEFWRFLKEKGA 663 (667)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCEEEEeCCCCC-CHHHHHHHHHHcCCEEcCcccCCeeEEEECCCCChHHHHHHHCCCeEEeHHHHHHHHhcCCC
Confidence 45799999999866555 89999999999999999999887888998887788999998888 99999999999987654
Q ss_pred C
Q 001082 734 L 734 (1160)
Q Consensus 734 L 734 (1160)
.
T Consensus 664 p 664 (667)
T 1dgs_A 664 P 664 (667)
T ss_dssp -
T ss_pred C
Confidence 3
No 100
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=95.52 E-value=0.03 Score=62.74 Aligned_cols=179 Identities=12% Similarity=0.098 Sum_probs=116.7
Q ss_pred ccccccccCChHHHHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEeCCCCCCC---cchhhHHHHHHHhcccCceeeee
Q 001082 225 RPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHS---EYGHAMSKIIEQNVLVDRCILDG 301 (1160)
Q Consensus 225 ~PmLA~~~~~~~~~~~~~~~~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~t---~~~p~l~~~l~~~~~~~~~ILDG 301 (1160)
+.||+.-+-++++-+. .+|++=+===|-||+|+...|....|+|+|.-+. ..+|+=...- .. ...-|||||
T Consensus 106 qlMlsEWl~dvP~dL~----~~W~~vpcPvGkRcLVVas~G~T~aysk~G~~l~~F~S~LPGG~~~~-s~-~~~~TILDC 179 (365)
T 3gjx_B 106 QLMLSEWLIDVPSDLG----QEWIVVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRN-ST-AKDYTILDC 179 (365)
T ss_dssp CSEEEEECCSCCTTHH----HHEEEEEEESSEEEEEEEETTEEEEECTTCCEEEEECCSSTTTCC------CCCCEEEEE
T ss_pred hHHHHHhcccCCcccc----cCeeEEeccCCcEEEEEecCceEEEECCCCCEEeeeCCCCCCCCccc-cC-CCCCEEEEE
Confidence 5788887766554332 3688777778999999999999999999997643 2334311100 00 245789998
Q ss_pred eEEEEeCCCCcccccccHHHHHHHhccCCCCCCccEEEEEEeeeeeCCcccccCCHHHHHHHHHHhhcCCCCcceeeccC
Q 001082 302 EMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPD 381 (1160)
Q Consensus 302 Elv~~d~~~~~~~pF~~lq~i~~~~r~~~~~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~ 381 (1160)
= |+.. . -+|+|.|||..+|.++.+-+..-|.-.|.+-+.+.++--+. ...
T Consensus 180 I---y~e~-------------------------~-~tyYVLDVL~W~g~~l~dCeteFRffWl~SKL~E~~~l~e~-s~~ 229 (365)
T 3gjx_B 180 I---YNEV-------------------------N-QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEK-TKL 229 (365)
T ss_dssp E---EETT-------------------------T-TEEEEEEEEEETTEECTTSCHHHHHHHHHHHGGGSTTTTSC-CSS
T ss_pred E---eecC-------------------------C-ceEEEEEEeeeCCcccccCchHHHHHHHHHHhhhccccccc-ccC
Confidence 3 4421 0 25999999999999999999999999999988765321000 000
Q ss_pred CCCCccccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEccccc
Q 001082 382 HGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYI 447 (1160)
Q Consensus 382 ~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKlKpey~ 447 (1160)
....+.. ...+.+ +.+.+.+.+..-..--..||.+=.-.+.|.+|. ++-+.=+||.-+
T Consensus 230 np~~Fv~------lp~~~C-~~esL~~~ls~~~pfe~DGLLFYHK~ahY~~G~-TPLVgWLkPyMv 287 (365)
T 3gjx_B 230 NPFKFVG------LKNFPC-TPESLCDVLSMDFPFEVDGLLFYHKQTHYSPGS-TPLVGWLRPYMV 287 (365)
T ss_dssp CCSEEEE------CCEEEC-CHHHHHHHTTCCCSSCEEEEEEEETTCCCCSEE-EEEEEEECHHHH
T ss_pred CCCceec------cCCCCc-CHHHHHHHhccCCCCccceEEEEeccccccCCC-Cccceecchhhh
Confidence 0000000 012233 456777766655555688999999999999995 554444566543
No 101
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=95.51 E-value=0.038 Score=52.76 Aligned_cols=85 Identities=12% Similarity=0.096 Sum_probs=58.4
Q ss_pred ccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhhhh
Q 001082 802 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKHL 880 (1160)
Q Consensus 802 ~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~ 880 (1160)
..|.|.+|.|.|... .. ++.++..|+.+||+++...+ .++|||+.+. +...-..+..+
T Consensus 9 ~~l~G~~~ViTG~l~---~~--------R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~------~e~~gsKl~kA---- 67 (113)
T 2cok_A 9 KPLSNMKILTLGKLS---RN--------KDEVKAMIEKLGGKLTGTANKASLCISTKKE------VEKMNKKMEEV---- 67 (113)
T ss_dssp CSSSSCEEEECSCCS---SC--------HHHHHHHHHHTTCEEESCSTTCSEEECCHHH------HHHCCHHHHHH----
T ss_pred CCcCCCEEEEEecCC---CC--------HHHHHHHHHHCCCEEcCccccCccEEEECCC------CCCCChHHHHH----
Confidence 469999999999642 11 46788999999999999999 5889999731 00000111111
Q ss_pred ccCCccEEeccch----------HHHHHHcCCccCCCC
Q 001082 881 LWNKKLHVVRSQW----------LEDCLAKEQKSEEYE 908 (1160)
Q Consensus 881 ~~~~~~~VVs~~W----------l~~ci~~~~~v~E~~ 908 (1160)
....++||+.+| +.+||....++|-..
T Consensus 68 -~~lgI~IvsE~~l~~~~~~~~~~~~~i~k~~i~~w~~ 104 (113)
T 2cok_A 68 -KEANIRVVSEDFLQDVSASTKSLQELFLAHILSSWGA 104 (113)
T ss_dssp -HHTTCCEECTHHHHHHHSCCSCHHHHHHHTBCSSCCC
T ss_pred -HHCCCcEEeHHHHHHHHhhchhHHHHHHHhcCCCCCC
Confidence 124689999999 566777766666655
No 102
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=95.45 E-value=0.0067 Score=73.65 Aligned_cols=195 Identities=17% Similarity=0.200 Sum_probs=115.2
Q ss_pred cEEEEEecceEEEEEEEeCCE-EEEEeC----CCCCCCcchhhHHHHHHHhcc-------cCceeeeeeEEEEe------
Q 001082 246 EVVIECKFDGDRIQIHKNGSE-IHYFSR----SFLDHSEYGHAMSKIIEQNVL-------VDRCILDGEMLVWD------ 307 (1160)
Q Consensus 246 ~~~vE~K~DGeR~qih~~g~~-v~~fSR----~g~d~t~~~p~l~~~l~~~~~-------~~~~ILDGElv~~d------ 307 (1160)
.|++|+|+||.-+.+.+.+|. ++..|| .|+|+|.-...+.. +-..+. +..+.+=||++.--
T Consensus 117 ~~~~EpKiDGlavsL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IP~~L~~~~~~~~p~~levRGEv~m~~~~F~~l 195 (615)
T 3sgi_A 117 HYLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIAD-VPERLTPGDDYPVPEVLEVRGEVFFRLDDFQAL 195 (615)
T ss_dssp CEEEEEEECSEEEEEEEETTEEEEEECCTTSSSCBCCHHHHHSCSS-SCSSCCCCSSCCCCSEEEEEEEEECCHHHHHHH
T ss_pred eEEEEEEecceEEEEEEECCEEEEEEecCCCcchhhHHHHHHhhcC-cchhhcCCcccCCCCeEEEEEEEEEeHHHHHHH
Confidence 699999999999999988776 689999 47888752211100 000111 23578899988631
Q ss_pred -CC---CCcccccccHHHHHH-HhccCCCCC---CccEEEEEEeeeeeCCcccccCCHHHHHHHHHHhhcCCCCcceeec
Q 001082 308 -TS---LNRFAEFGSNQEIAK-AARDGLSSD---RQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLV 379 (1160)
Q Consensus 308 -~~---~~~~~pF~~lq~i~~-~~r~~~~~~---~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~ 379 (1160)
.. .| -.+|..-+..+. ..|. .++. ..++.|++|.+...+|.. -....++.+.|.++-=++..
T Consensus 196 N~~~~~~g-~~~faNpRNaAAGsLRq-ld~~ita~R~L~~f~y~~~~~~~~~--~~t~~e~l~~L~~~Gf~v~~------ 265 (615)
T 3sgi_A 196 NASLVEEG-KAPFANPRNSAAGSLRQ-KDPAVTARRRLRMICHGLGHVEGFR--PATLHQAYLALRAWGLPVSE------ 265 (615)
T ss_dssp HTTCSSSS-SCCCSSHHHHHHHHHTC-SSTTHHHHSCCEEEEEEEEEEESCC--CSBTTTHHHHHHHTTCCCCC------
T ss_pred HHHHHHcC-CCcCCChHHHHHHHHHc-CChhhHhhCcceEEEEeccccCCCC--CcCHHHHHHHHHHCCCCCCC------
Confidence 10 01 124543333221 1121 1221 124999999998765532 23567888888876322211
Q ss_pred cCCCCCccccCCCCCccceecCCHHHHHHHHHHHH------HcCCceEEEecCCCCCcC----CCCCCCe---EEEcccc
Q 001082 380 PDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETI------ENRDEGIVLKDLGSKWEP----GDRSGKW---LKLKPEY 446 (1160)
Q Consensus 380 p~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai------~~g~EGlVlK~~ds~Y~p----GkRs~~W---lKlKpey 446 (1160)
....+.+.+++.++++.+. .---.|||+|--+-.|.. ..|.+.| +|+.++
T Consensus 266 ----------------~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~lG~t~k~PRWAiA~Kfpae- 328 (615)
T 3sgi_A 266 ----------------HTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRWAIAYKYPPE- 328 (615)
T ss_dssp ----------------CCCCBSSHHHHHHHHTTTTTSGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEEECCCS-
T ss_pred ----------------CeEeeCCHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCHHHHHHhCCCCCCCCceEEEcCCCc-
Confidence 1234678999999997763 334579999965544322 2356778 788875
Q ss_pred ccCCCcccEEEEEEEecCCCCCCccceE
Q 001082 447 IRAGSDLDVLIIGGYYGSGRRGGEVAQF 474 (1160)
Q Consensus 447 ~~~g~~lDlvVIG~~~G~Grr~g~~gsf 474 (1160)
..--.|.+..|.-|| .|.++-.
T Consensus 329 -----e~~T~l~~I~~qVGR-TG~iTPv 350 (615)
T 3sgi_A 329 -----EAQTKLLDIRVNVGR-TGRITPF 350 (615)
T ss_dssp -----EEEEECCEECCCBCS-SSCBCCB
T ss_pred -----eeEEEEEEEEEecCC-CceeeEE
Confidence 344455666666664 5555443
No 103
>4e6n_A Metallophosphoesterase; RNA repair, RNA ligase, ligase-activating, protein binding; HET: AMP; 2.39A {Clostridium thermocellum} PDB: 4drf_A* 3ty9_A* 3ty8_A* 3ty5_A*
Probab=95.45 E-value=0.082 Score=59.42 Aligned_cols=180 Identities=15% Similarity=0.188 Sum_probs=108.7
Q ss_pred hHHHHHhcC---CCcEEEEEecceEEEEEEE--e------------CCEEEEEeCCCCCCCcchhhHHHHHHH-------
Q 001082 235 AHAAWRKLH---GKEVVIECKFDGDRIQIHK--N------------GSEIHYFSRSFLDHSEYGHAMSKIIEQ------- 290 (1160)
Q Consensus 235 ~~~~~~~~~---~~~~~vE~K~DGeR~qih~--~------------g~~v~~fSR~g~d~t~~~p~l~~~l~~------- 290 (1160)
+.+++.-+. =..++||+|.=|-|+++.+ + |..-.+|+|+|..+-+. +.+.+.+..
T Consensus 68 P~eAF~yyr~~GV~~VVCEeKHMGSRAVv~vcRd~~~A~~rFGv~~g~~G~~yTRTGR~FF~d-~~l~~~ll~rlr~a~~ 146 (427)
T 4e6n_A 68 PIEAFEYFRTRGVGKVVCEQKHMGSRAVVIVCKDSQVAEKRFGVLDGTAGICYTRTGRHFFDD-MQLEAELIDRVRKVLD 146 (427)
T ss_dssp HHHHHHHHHTTTCCEEEEEECCCSEEEEEEEESSHHHHHHHHCCCSSCSEEEECTTSCBSCSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCceEEeccccCCcceEEEEEcCHHHHHHhcCCCCCCcceeEecCCccccCC-chhHHHHHHHHHHHHH
Confidence 455554432 2579999999999997664 2 22456999999998642 333332221
Q ss_pred ------hcccCceeeeeeEEEEeCCCC-----cccccccH---------HHHHHHhc--------------cCCC-----
Q 001082 291 ------NVLVDRCILDGEMLVWDTSLN-----RFAEFGSN---------QEIAKAAR--------------DGLS----- 331 (1160)
Q Consensus 291 ------~~~~~~~ILDGElv~~d~~~~-----~~~pF~~l---------q~i~~~~r--------------~~~~----- 331 (1160)
.+..+=+.||||++-|+-+.. .+.|-|.. ..+..+.. .+.+
T Consensus 147 ~aglw~~l~tdWl~LD~ELmPWSaKA~~Lir~QYA~VgaA~~a~l~~a~~~L~~A~~~~~~~~~~~~~~~~rg~dv~~Ll 226 (427)
T 4e6n_A 147 KSGFWGDFNTDWVCLDCELMPWSAKAQKLLEEQYSAVGISGRVVLDEAVKLLKQASLNKTVSFDVSRQTSGKNADINELL 226 (427)
T ss_dssp HHTHHHHTTCSEEEEEEEEECTHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTC-----------CEECCHHHHH
T ss_pred hcchHHHhCCcEEEeecccCCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccccccccccCCCHHHHH
Confidence 122445789999999974321 12221110 00000000 0000
Q ss_pred -----------------------C-CCccEEEEEEeeeeeCCcccccCCHHHHHHHHHHhhcCCCCcceeeccCCCCCcc
Q 001082 332 -----------------------S-DRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSH 387 (1160)
Q Consensus 332 -----------------------~-~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~~~~~ 387 (1160)
. ....+.+.-|-||-..|....+.|..--.+.+..++...++ ++.+...
T Consensus 227 ~r~~~r~~~~~~y~~AYr~YcWpv~gl~~~rlAPF~iLA~eg~~~~~~~H~WHm~~~~rl~~~d~~---l~~~T~~---- 299 (427)
T 4e6n_A 227 QRFTERSEMMQKYVEAYRKYCWPVNSIDDLKLAPFHILATEGKVHSDKNHIWHMDTIAKYCTQDDS---LIMATNH---- 299 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCSSGGGCEEEEEEEEEETTEECTTSCHHHHHHHHHHHHSTTCT---TBCCCCE----
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcCceeecchhhhhcccccccCCChHHHHHHHHHHHhcCcc---ceecccc----
Confidence 0 01128899999999999999999999888888888765543 2222110
Q ss_pred ccCCCCCccceecC---CHHHHHHHHHHHHHcCCceEEEecCCCCC
Q 001082 388 VRPQGEPCWSLVAH---NVDEVEKFFKETIENRDEGIVLKDLGSKW 430 (1160)
Q Consensus 388 v~~~~~~~~~~~~~---~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y 430 (1160)
..+... +.++...++.+.-..|.||+|+|..+..=
T Consensus 300 --------~~VDl~d~~s~~~a~~WW~~lT~~GgEGMVVKP~~~~~ 337 (427)
T 4e6n_A 300 --------ILVDVTDAESVDKGIKWWEDLTASGGEGMVVKPYDFIV 337 (427)
T ss_dssp --------EEEETTCHHHHHHHHHHHHHHHHTTCCEEEEEESSSSC
T ss_pred --------EEeeCCCHHHHHHHHHHHHHHhcCCCceeEecchhhhc
Confidence 011123 34566678888889999999999875443
No 104
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=95.08 E-value=0.0038 Score=76.77 Aligned_cols=75 Identities=20% Similarity=0.231 Sum_probs=0.0
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhcCC-CeeecchHHHHHh
Q 001082 655 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCS 729 (1160)
Q Consensus 655 s~lF~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia~~~~~~K~~~a~~~~-~VV~p~WV~dCi~ 729 (1160)
...|.|+.||+++.-...+|+++.++|.++||++....+..++++|+++..+-|++.|...+ +||+-+|+++++.
T Consensus 595 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~gsKl~KA~~lgI~Ii~E~~f~~~l~ 670 (671)
T 2owo_A 595 DSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLLG 670 (671)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CCcccCcEEEEcCCCCCCCHHHHHHHHHHcCCEEeCcccCceeEEEECCCCChHHHHHHHCCCcEEcHHHHHHHhc
Confidence 45799999999876667789999999999999999999887888998887788999998888 9999999998874
No 105
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=94.79 E-value=0.043 Score=67.48 Aligned_cols=192 Identities=17% Similarity=0.190 Sum_probs=112.4
Q ss_pred cEEEEEecceEEEEEEEeCCEEEEEeCC----CCCCCcchhhHHHHHHHhcc--cCceeeeeeEEEEeCCCCc-------
Q 001082 246 EVVIECKFDGDRIQIHKNGSEIHYFSRS----FLDHSEYGHAMSKIIEQNVL--VDRCILDGEMLVWDTSLNR------- 312 (1160)
Q Consensus 246 ~~~vE~K~DGeR~qih~~g~~v~~fSR~----g~d~t~~~p~l~~~l~~~~~--~~~~ILDGElv~~d~~~~~------- 312 (1160)
.|++|+|+||.-+ +.+.+|. +..||. |+|+|.-...+.. +-..+. +..+.+=||++.-...-.+
T Consensus 110 ~~~~e~KiDGlai-L~Ye~G~-~a~TRGDG~~GedvT~n~rtI~~-iP~~l~~~p~~levRGEv~m~~~~F~~lN~~~~~ 186 (667)
T 1dgs_A 110 LYTVEHKVDGLSV-LYYEEGV-WSTGSGDGEVGEEVTQNLLTIPT-IPRRLKGVPDRLEVRGEVYMPIEAFLRLNEELEE 186 (667)
T ss_dssp EEEEEECCSCEEE-EEEETTE-EEEEECSSSEEEBCTGGGTSSTT-SCSBCSSCCSEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred eEEEEEccceeEE-EEEcCCC-EEEeeCCCcchhhHHHHHhhhcC-CCcccCCCCCeEEEEEEEEEEHHHHHHHHHHHHh
Confidence 4999999999999 9888888 999994 7888863322111 000111 3347888998763110000
Q ss_pred --ccccccHHHHH-HHhccCCCCC---CccE--EEEEEeeee-eCCcccccCCHHHHHHHHHHhhcCCCCcceeeccCCC
Q 001082 313 --FAEFGSNQEIA-KAARDGLSSD---RQVL--CYFAFDVLY-VGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHG 383 (1160)
Q Consensus 313 --~~pF~~lq~i~-~~~r~~~~~~---~~~~--~~~vFDiL~-lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~ 383 (1160)
-.+|..-+..+ ...| ..++. ..++ .|++|++++ .++.. -....++.+.|..+-=++..
T Consensus 187 ~g~~~faNpRNaaAGsLr-qld~~~~a~r~L~~~~~~y~~~~~~~~~~--~~t~~e~l~~L~~~Gf~v~~---------- 253 (667)
T 1dgs_A 187 RGEKVFKNPRNAAAGSLR-QKDPRVTAKRGLRATFYALGLGLGLEESG--LKSQYELLLWLKEKGFPVEH---------- 253 (667)
T ss_dssp HTCCCCSSHHHHHHHHHS-CSSHHHHHHSCCEEECCCBCTTTTTTSCC--CCBHHHHHHHHHHTTCCCCS----------
T ss_pred cCCCcccChHHHHHHHHH-hcChhhhhhCCCCCEEEEEEeeccCCCCC--CCCHHHHHHHHHHCCCCCCc----------
Confidence 01232212111 1111 11110 1237 999999852 13221 25788999999887422211
Q ss_pred CCccccCCCCCccceecCCHHHHHHHHHHHHHc------CCceEEEecCCCCCc----CCCCCCCe---EEEccccccCC
Q 001082 384 LNSHVRPQGEPCWSLVAHNVDEVEKFFKETIEN------RDEGIVLKDLGSKWE----PGDRSGKW---LKLKPEYIRAG 450 (1160)
Q Consensus 384 ~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~------g~EGlVlK~~ds~Y~----pGkRs~~W---lKlKpey~~~g 450 (1160)
....+.+.+++.++++.+-+. .-.|||+|--+-.+. .-.|.+.| +|+.++
T Consensus 254 ------------~~~~~~~~~~v~~~~~~~~~~R~~l~y~iDGvViKv~~~~~q~~LG~t~k~PrWAiA~Kfpae----- 316 (667)
T 1dgs_A 254 ------------CYEKALGAEGVEEVYRRGLAQRHALPFEADGVVLKLDDLTLWGELGYTARAPRFALAYKFPAE----- 316 (667)
T ss_dssp ------------CEEEEEHHHHHHHHHHHHHHTTTTSSSCCCEEEEEESBTHHHHHSCBCSSCBSSEEEEECCCC-----
T ss_pred ------------cceEeCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEecCHHHHHHhCcccCCCCceEEecCCCc-----
Confidence 123456789999999988644 458999996554432 12356778 777775
Q ss_pred CcccEEEEEEEecCCCCCCccc
Q 001082 451 SDLDVLIIGGYYGSGRRGGEVA 472 (1160)
Q Consensus 451 ~~lDlvVIG~~~G~Grr~g~~g 472 (1160)
..--.|.+..|.-|| .|.++
T Consensus 317 -~~~T~l~~I~~qVGR-TG~iT 336 (667)
T 1dgs_A 317 -EKETRLLDVVFQVGR-TGRVT 336 (667)
T ss_dssp -CEEEEEEEEEEEECT-TSBEE
T ss_pred -eEEEEEEEEEEecCC-Cceee
Confidence 455567777776664 55554
No 106
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=92.55 E-value=0.1 Score=64.10 Aligned_cols=87 Identities=25% Similarity=0.440 Sum_probs=74.7
Q ss_pred CCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhh--------ccCCcccccccccCc------
Q 001082 122 GGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDL--------KLGISEKSIFHEFHP------ 187 (1160)
Q Consensus 122 ~~LTI~eVn~~Ld~LA~~~~~~~k~~iL~~ll~~~s~~E~k~l~RiIlkdL--------riGi~e~til~~~hp------ 187 (1160)
.++...++-++|++|+..+++.+|..+|..+|..+++.+.-|.++++++.| ++|++++++.+++..
T Consensus 19 ~~~~f~~~~~~~~~l~~t~~r~~k~~~l~~~~~~~~~~d~~~~~~ll~~~l~P~~~~~~~~gi~~~~L~k~~~~~~g~~~ 98 (621)
T 2hiv_A 19 SHMEFKVIAEYFDKLEKISSRLQLTALLADLLSKSDKTIIDKVVYIIQGKLWPDFLGYPELGIGEKFLIKAISIATNTDE 98 (621)
T ss_dssp --CBTHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSCGGGHHHHHHHTTTCSSCGGGCCCCCCCCHHHHHHHHHHHHTCCH
T ss_pred CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCchHHHHHHHHHhCCcCcccccccccCCCHHHHHHHHHHHHCcCH
Confidence 467888999999999999999999999999999999999999999999875 789999998876532
Q ss_pred -cHHHHHhhhCCHHHHHHHHhh
Q 001082 188 -DAEDLFNVTCDLKLVCEKLKD 208 (1160)
Q Consensus 188 -da~~~~~~~~DL~~V~~~L~~ 208 (1160)
.....|..+.||+.++..+..
T Consensus 99 ~~~~~~~~~~GDlg~~a~~~~~ 120 (621)
T 2hiv_A 99 NSVENLYKTIGDLGEVARRLKS 120 (621)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHh
Confidence 345678899999999998875
No 107
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=88.94 E-value=0.24 Score=55.04 Aligned_cols=68 Identities=16% Similarity=0.115 Sum_probs=48.5
Q ss_pred ccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecC-CCCceEEEEecCCChh----h-HhhhcCCCeeecchHHHHHh
Q 001082 658 FSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNL-NNSVTHCVAADNKGLK----Y-EAAKRRGDVIHYSWVLDCCS 729 (1160)
Q Consensus 658 F~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n~-~~s~Th~Ia~~~~~~K----~-~~a~~~~~VV~p~WV~dCi~ 729 (1160)
+..+.||+ +. ...+.+|...+.+.||+++ ++ .+.+||+|.....+.| . .+++...+||+++|+....+
T Consensus 113 W~P~Vl~~-Ss--ke~~~~L~~~L~~LGik~v-~~~~detTHlVm~krnT~KvTvK~L~ALI~gkPIV~~~Fl~al~~ 186 (325)
T 3huf_A 113 WRSMCIQF-DN--PEMLSQWASNLNLLGIPTG-LRDSDATTHFVMNRQAGSSITVGTMYAFLKKTVIIDDSYLQYLST 186 (325)
T ss_dssp ECCCCEEE-SC--HHHHHHHHHHHHTTTCCEE-SSCCTTCCEEECCCCCSSCCCHHHHHHHHTTCEEECHHHHHHHTT
T ss_pred EeeeEEEe-cC--HHHHHHHHHHHHHcCCEEE-EccCCCEEEEEEeccccccchHHHHHHHHCCCcEecHHHHHHHHH
Confidence 45556676 21 1235679999999999999 87 5679999986444443 4 44555459999999999754
No 108
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.71 E-value=0.79 Score=45.80 Aligned_cols=85 Identities=16% Similarity=0.200 Sum_probs=58.1
Q ss_pred ccCeEEEEEcCC--CCCChHHHHHHHHHcCCEEEecC-CCCceEEEEecCCCh----hhHhhhcCC-CeeecchHHHHHh
Q 001082 658 FSDMVFYFVNVP--PAYSLDSLHKMVVENGGTFSMNL-NNSVTHCVAADNKGL----KYEAAKRRG-DVIHYSWVLDCCS 729 (1160)
Q Consensus 658 F~G~~F~vv~~~--~~~~k~eLeklI~~~GG~iv~n~-~~s~Th~Ia~~~~~~----K~~~a~~~~-~VV~p~WV~dCi~ 729 (1160)
.+|...|+-... ...+--++.+.+-.-|++..+.- .-.+||.|+.+-.+. ..-.++..+ +||+|+||..|--
T Consensus 162 msgitvclgpldplkeisdlqisqclshigarplqrhvaidtthfvcndldneesneelirakhnnipivrpewvracev 241 (290)
T 4gns_A 162 MSGITVCLGPLDPLKEISDLQISQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELIRAKHNNIPIVRPEWVRACEV 241 (290)
T ss_dssp CTTCCEEECCCCGGGTCCHHHHHHHHHHTTCCCCBSSCCTTCCEEECSCCTTCTTCHHHHHHHHTTCCEECTHHHHHHHH
T ss_pred ccCceEEecCCChhhhhhhccHHHHHHHhCCchhhheeeeecceeeecCCCcccchHHHHhhhccCCCccCHHHHHHHhh
Confidence 456677863322 23455677788888888876643 234799998765332 333444445 9999999999999
Q ss_pred cCccCCCCccccc
Q 001082 730 QKKLLQLQPKYYL 742 (1160)
Q Consensus 730 ~~~lLp~~p~~~l 742 (1160)
.++++-++..|+-
T Consensus 242 ekrivgvrgfyld 254 (290)
T 4gns_A 242 EKRIVGVRGFYLD 254 (290)
T ss_dssp TTSCCCSGGGBTT
T ss_pred hheeeeeeeEEEc
Confidence 9999998876543
No 109
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Probab=86.05 E-value=0.86 Score=55.24 Aligned_cols=85 Identities=18% Similarity=0.355 Sum_probs=70.9
Q ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCHH-HHHHHHHHHhhhhc-------cCCcccccccccC----c---c
Q 001082 124 LTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQ-EMKWIIMIILKDLK-------LGISEKSIFHEFH----P---D 188 (1160)
Q Consensus 124 LTI~eVn~~Ld~LA~~~~~~~k~~iL~~ll~~~s~~-E~k~l~RiIlkdLr-------iGi~e~til~~~h----p---d 188 (1160)
+...++-+++++|+..+++.+|..+|+.+|...+|. +.-++++++++.+. +|++++++.+++. - .
T Consensus 4 m~~~~~a~~~~~i~~t~~r~~k~~~l~~~~~~~~~~~~~~~~~~l~~g~~~p~~~~~~~gi~~~~l~~~~~~~~g~~~~~ 83 (558)
T 3gde_A 4 MLFAEFAEFCERLEKISSTLELTARIAAFLQKIEDERDLYDVVLFITGKVYPPWDERELGVGIGLLYEALENVSGVKRSE 83 (558)
T ss_dssp CBHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTCSSCTTSSCCCCCCHHHHHHHHHHHHCCCHHH
T ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCchhhHHHHHHHHcCCCCcccccceeCcChHHHHHHHHHHHCcCHHH
Confidence 567888899999999999999999999999999988 88999999987763 6999998876542 1 2
Q ss_pred HHHHHhhhCCHHHHHHHHhh
Q 001082 189 AEDLFNVTCDLKLVCEKLKD 208 (1160)
Q Consensus 189 a~~~~~~~~DL~~V~~~L~~ 208 (1160)
..+.|....||+.++..+..
T Consensus 84 ~~~~~~~~GDlg~~a~~~~~ 103 (558)
T 3gde_A 84 IESMIREYGDLGLVAEQLIK 103 (558)
T ss_dssp HHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHh
Confidence 45678899999999988764
No 110
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=85.69 E-value=0.65 Score=56.43 Aligned_cols=85 Identities=21% Similarity=0.310 Sum_probs=71.6
Q ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhc-------cCCcccccccccCc-------cHH
Q 001082 125 TIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLK-------LGISEKSIFHEFHP-------DAE 190 (1160)
Q Consensus 125 TI~eVn~~Ld~LA~~~~~~~k~~iL~~ll~~~s~~E~k~l~RiIlkdLr-------iGi~e~til~~~hp-------da~ 190 (1160)
...++-+++++|+..+++.+|..+|..+|..+++.+..|.++++++.|- +|++++++.+++.. ...
T Consensus 2 ~f~~~a~~~~~l~~t~~r~~k~~~l~~~~~~~~~~d~~~~~~ll~~~l~P~~~~~~~gi~~~~L~~~~~~~~g~~~~~~~ 81 (561)
T 2cfm_A 2 RYLELAQLYQKLEKTTMKLIKTRLVADFLKKVPDDHLEFIPYLILGEVFPEWDERELGVGEKLLIKAVAMATGIDAKEIE 81 (561)
T ss_dssp BHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHSCGGGTTTHHHHHTTCSSCTTCCCCCCCCHHHHHHHHHHHHSCCHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCchHHHHHHHHHhCCCCccccccccCCCHHHHHHHHHHHHCcCHHHHH
Confidence 3567788899999998899999999999999999999999999988663 69999998876532 245
Q ss_pred HHHhhhCCHHHHHHHHhhh
Q 001082 191 DLFNVTCDLKLVCEKLKDR 209 (1160)
Q Consensus 191 ~~~~~~~DL~~V~~~L~~~ 209 (1160)
+.|....||+.++..+...
T Consensus 82 ~~~~~~GDlg~~~~~~~~~ 100 (561)
T 2cfm_A 82 ESVKDTGDLGESIALAVKK 100 (561)
T ss_dssp HHHHHHSCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHhcc
Confidence 6788899999999988754
No 111
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.43 E-value=1.4 Score=44.00 Aligned_cols=95 Identities=16% Similarity=0.281 Sum_probs=62.2
Q ss_pred cCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEc-cCC-CceEEEEecCCCcccchhhhHHHHHHHhhhh
Q 001082 803 CFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCN-NLA-NATHVVVLSVLGYDVNFNSLTESFTAREKHL 880 (1160)
Q Consensus 803 lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~-~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~ 880 (1160)
=++|.++|+-...+ ...|.++ .+...+.--|+.-.. ... +.||.|+.+-++...+-+-+|.. |
T Consensus 161 dmsgitvclgpldp-----lkeisdl---qisqclshigarplqrhvaidtthfvcndldneesneelirak------h- 225 (290)
T 4gns_A 161 DMSGITVCLGPLDP-----LKEISDL---QISQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELIRAK------H- 225 (290)
T ss_dssp CCTTCCEEECCCCG-----GGTCCHH---HHHHHHHHTTCCCCBSSCCTTCCEEECSCCTTCTTCHHHHHHH------H-
T ss_pred cccCceEEecCCCh-----hhhhhhc---cHHHHHHHhCCchhhheeeeecceeeecCCCcccchHHHHhhh------c-
Confidence 36788999877553 1123333 344556666665433 334 79999998765443333323321 1
Q ss_pred ccCCccEEeccchHHHHHHcCCccCCCCCCCCCCC
Q 001082 881 LWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTG 915 (1160)
Q Consensus 881 ~~~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~v~~~~ 915 (1160)
..+.||+++|+..|--++++|.-..|.+...+
T Consensus 226 ---nnipivrpewvracevekrivgvrgfyldadq 257 (290)
T 4gns_A 226 ---NNIPIVRPEWVRACEVEKRIVGVRGFYLDADQ 257 (290)
T ss_dssp ---TTCCEECTHHHHHHHHTTSCCCSGGGBTTSCG
T ss_pred ---cCCCccCHHHHHHHhhhheeeeeeeEEEcccH
Confidence 35789999999999999999999998876654
No 112
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=81.65 E-value=1.2 Score=55.37 Aligned_cols=87 Identities=14% Similarity=0.281 Sum_probs=72.2
Q ss_pred CCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh---CCHHHHHHHHHHHhhhh-------ccCCcccccccccCc---
Q 001082 121 SGGLTIKELNDLLDRLASSENRAEKISVLSTLIKK---TNAQEMKWIIMIILKDL-------KLGISEKSIFHEFHP--- 187 (1160)
Q Consensus 121 ~~~LTI~eVn~~Ld~LA~~~~~~~k~~iL~~ll~~---~s~~E~k~l~RiIlkdL-------riGi~e~til~~~hp--- 187 (1160)
.+++...++-+++++|+..+++.+|..+|..+|.. ++|.++-|.+.++++.| .+||+++++.+++..
T Consensus 53 ~~~~~~~~la~~~~~i~~t~~r~~k~~~l~~~~~~~~~~~~~dl~~~v~ll~g~l~P~~~~~elgi~~~~L~k~i~~~~g 132 (688)
T 1x9n_A 53 GQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATG 132 (688)
T ss_dssp TSCCBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTCSSCGGGCCCCCCCHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcCChHHHHHHHHHHcCCCCccccccccCcChHHHHHHHHHHHC
Confidence 35788999999999999999999999999999998 79999999999999875 379999998875522
Q ss_pred ----cHHHHHhhhCCHHHHHHHHh
Q 001082 188 ----DAEDLFNVTCDLKLVCEKLK 207 (1160)
Q Consensus 188 ----da~~~~~~~~DL~~V~~~L~ 207 (1160)
...+.|....||+.||..+.
T Consensus 133 ~~~~~~~~~~~~~GDlg~va~~~~ 156 (688)
T 1x9n_A 133 RQLESVRAEAAEKGDVGLVAENSR 156 (688)
T ss_dssp CCHHHHHHHHHHHTCHHHHTCC--
T ss_pred cCHHHHHHHHHhcCCHHHHHHHHH
Confidence 24567888999999987554
No 113
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=81.13 E-value=2.1 Score=42.68 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=40.7
Q ss_pred CccCC-CeEEEEccCCCCCCChhHH-HHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCC
Q 001082 801 WSCFH-GCCIYFYHSTEPLSPDWEV-LLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVL 860 (1160)
Q Consensus 801 ~~lF~-gc~~yl~~~~~~~~~d~~~-i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~ 860 (1160)
..+|. +++|||............. =+.....+|++.+...|+++..-++ +|||||...+-
T Consensus 56 Rkifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R~i 118 (160)
T 3qbz_A 56 KKIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSV 118 (160)
T ss_dssp HHHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESSCS
T ss_pred HHhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecCcC
Confidence 35787 8999999865321111111 0122335677888999999999998 69999997654
No 114
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=79.63 E-value=2.1 Score=46.00 Aligned_cols=69 Identities=13% Similarity=0.232 Sum_probs=48.3
Q ss_pred HHHHHhcCCEEEccCC---CceEEEEecCCCcccchhhhHHHHHHHhhhhccCCcc--EEeccchHHHHHHc---CC---
Q 001082 834 KLEISFHGGKVCNNLA---NATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKL--HVVRSQWLEDCLAK---EQ--- 902 (1160)
Q Consensus 834 ~~~I~~~GG~v~~~ls---~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~VVs~~Wl~~ci~~---~~--- 902 (1160)
.+.++..|=+++++++ .|+|||.|... ++ .+-|+ ++ ...| +||+++||.+|++. |.
T Consensus 40 ~~~Lr~LGI~Iv~d~~~~~~~n~LiAPkil-RT--~KFL~-sL---------a~~P~~~il~p~FI~~~Lk~ih~~~~~~ 106 (256)
T 3t7k_A 40 IEILNQLGIKIFDNIKETDKLNCIFAPKIL-RT--EKFLK-SL---------SFEPLKFALKPEFIIDLLKQIHSKKDKL 106 (256)
T ss_dssp HHHHHHTTEEECSSCCGGGCCCEEECSSCC-CB--HHHHH-HT---------TSTTCCEEECTHHHHHHHHHHC------
T ss_pred HHHHHHcCeEEEecCcccCCCCEEEcCchh-hH--HHHHH-Hh---------ccCccceEeCHHHHHHHHHHhhcCCccc
Confidence 3578899999999994 69999998643 21 12112 22 1223 69999999999998 77
Q ss_pred ---ccCCCCCCCCCCC
Q 001082 903 ---KSEEYEYSLKPTG 915 (1160)
Q Consensus 903 ---~v~E~~Y~v~~~~ 915 (1160)
.++.++|.+....
T Consensus 107 ~~~~l~~~dY~L~d~~ 122 (256)
T 3t7k_A 107 SQININLFDYEINGIN 122 (256)
T ss_dssp -CCCCCSSTTBCTTCC
T ss_pred ccccCChhhccCCCcc
Confidence 8889999876554
No 115
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=76.49 E-value=5.3 Score=39.58 Aligned_cols=92 Identities=13% Similarity=0.048 Sum_probs=54.0
Q ss_pred CCccC-CCeEEEEccCCCCCCCh-hHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchh---hhHHHH
Q 001082 800 KWSCF-HGCCIYFYHSTEPLSPD-WEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFN---SLTESF 873 (1160)
Q Consensus 800 ~~~lF-~gc~~yl~~~~~~~~~d-~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~---~l~~~l 873 (1160)
+..|. ++-+|||+......... ...-.....++|++.+...||+|..-++ +|||||...+......+. .|.++
T Consensus 17 WrkIM~r~s~iYFdt~~~~~~~~~~~~~l~k~~~llkk~f~~LGa~I~~FFd~~VTiIITrR~~~~~~~yp~~DIL~rA- 95 (151)
T 3oq0_A 17 RGSHMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRA- 95 (151)
T ss_dssp ----CCCCCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHH-
T ss_pred HHHHhccCCEEEEeCCCcchhhHHHHHHHHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHH-
Confidence 45677 89999999753211111 1112334567888999999999999998 699999875432111111 11111
Q ss_pred HHHhhhhccCCccEEeccchHHHHHHc
Q 001082 874 TAREKHLLWNKKLHVVRSQWLEDCLAK 900 (1160)
Q Consensus 874 ~~~~~~~~~~~~~~VVs~~Wl~~ci~~ 900 (1160)
.....+|=+.+=+..=++.
T Consensus 96 --------r~~~mKIWs~EKl~RfL~~ 114 (151)
T 3oq0_A 96 --------KKNYMKVWSYEKAARFLKN 114 (151)
T ss_dssp --------HHTTCEEEEHHHHHHHHHT
T ss_pred --------HHcCCeeecHHHHHHHHHh
Confidence 1245677777777766655
No 116
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=72.85 E-value=8.1 Score=37.56 Aligned_cols=87 Identities=13% Similarity=0.046 Sum_probs=51.8
Q ss_pred CCeEEEEccCCCCCCCh-hHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchh---hhHHHHHHHhhh
Q 001082 805 HGCCIYFYHSTEPLSPD-WEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFN---SLTESFTAREKH 879 (1160)
Q Consensus 805 ~gc~~yl~~~~~~~~~d-~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~---~l~~~l~~~~~~ 879 (1160)
+...|||++-....... ...-++...++|++.+...||+|..-++ +|||||...+......+. .|.+.
T Consensus 6 r~s~iyfd~~~~~~~~~~~~~k~~k~~~llk~~f~~LGa~I~~FFd~~VTiiITrR~~~~~~~~p~~DIL~rA------- 78 (134)
T 3oq4_A 6 RDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRA------- 78 (134)
T ss_dssp TTCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHH-------
T ss_pred ccceEEecCCchHHHHHHHHHhhHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHH-------
Confidence 45689999864311011 1111234568899999999999999998 699999875432211111 11111
Q ss_pred hccCCccEEeccchHHHHHHc
Q 001082 880 LLWNKKLHVVRSQWLEDCLAK 900 (1160)
Q Consensus 880 ~~~~~~~~VVs~~Wl~~ci~~ 900 (1160)
.....+|=+.+=+..=++.
T Consensus 79 --r~~~mKIWs~EKl~RfL~~ 97 (134)
T 3oq4_A 79 --KKNYMKVWSYEKAARFLKN 97 (134)
T ss_dssp --HHTTCEEEEHHHHHHHHHH
T ss_pred --HHcCCeeeeHHHHHHHHHh
Confidence 1245677666666665554
No 117
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=71.50 E-value=5.4 Score=44.43 Aligned_cols=58 Identities=14% Similarity=0.179 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCEEEccC-C-CceEEEEecCCCcccchhhhHHHHHHHhhhhccCCccEEeccchHHHHHH
Q 001082 831 RRLKLEISFHGGKVCNNL-A-NATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLA 899 (1160)
Q Consensus 831 ~~l~~~I~~~GG~v~~~l-s-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~VVs~~Wl~~ci~ 899 (1160)
..|+..+...||.++ +. . .|||||+..-.......+-|+.-+ ...+||+++||.+...
T Consensus 127 ~~L~~~L~~LGik~v-~~~~detTHlVm~krnT~KvTvK~L~ALI----------~gkPIV~~~Fl~al~~ 186 (325)
T 3huf_A 127 SQWASNLNLLGIPTG-LRDSDATTHFVMNRQAGSSITVGTMYAFL----------KKTVIIDDSYLQYLST 186 (325)
T ss_dssp HHHHHHHHTTTCCEE-SSCCTTCCEEECCCCCSSCCCHHHHHHHH----------TTCEEECHHHHHHHTT
T ss_pred HHHHHHHHHcCCEEE-EccCCCEEEEEEeccccccchHHHHHHHH----------CCCcEecHHHHHHHHH
Confidence 358889999999999 55 4 499999963221222233333221 2458999999999754
No 118
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=59.21 E-value=10 Score=40.65 Aligned_cols=87 Identities=21% Similarity=0.294 Sum_probs=64.1
Q ss_pred CCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-------------CHHHHHHHHHHHhhhhc-----cCCccccccc
Q 001082 122 GGLTIKELNDLLDRLASSENRAEKISVLSTLIKKT-------------NAQEMKWIIMIILKDLK-----LGISEKSIFH 183 (1160)
Q Consensus 122 ~~LTI~eVn~~Ld~LA~~~~~~~k~~iL~~ll~~~-------------s~~E~k~l~RiIlkdLr-----iGi~e~til~ 183 (1160)
.++.-.++-++|++|...+++.+|..+|..+|.+. .+...-.++|+|+=+.. .|++++++.+
T Consensus 12 ~~~~F~~l~~~~e~Ie~ts~rl~k~~il~~f~~~~~~~~~~l~~~~~~~~~dly~~l~ll~P~~d~~r~~ygi~e~~L~K 91 (240)
T 4htp_A 12 SHVPFADLCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDALHKNHKDVTDSFYPAMRLILPQLERERMAYGIKETMLAK 91 (240)
T ss_dssp GTSBHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTTTCSSCCCCSHHHHHHHSGGGCCSSCCCCCCHHHHHH
T ss_pred cCCcHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccccccCcccCcchHHHHHHHhCccccccccccCCCHHHHHH
Confidence 45778889999999999999999999999999873 35567888888887652 8999999887
Q ss_pred cc----C--c---cHHH---------HHhhhCCHHHHHHHHhh
Q 001082 184 EF----H--P---DAED---------LFNVTCDLKLVCEKLKD 208 (1160)
Q Consensus 184 ~~----h--p---da~~---------~~~~~~DL~~V~~~L~~ 208 (1160)
++ + + ++.. .|.-..||+.||..+..
T Consensus 92 ai~~~~g~~~~~~~~~~L~~wk~~~~~~~~~GDlg~va~~~~~ 134 (240)
T 4htp_A 92 LYIELLNLPRDGKDALKLLNYRTPTGTHGDAGDFAMIAYFVLK 134 (240)
T ss_dssp HHHHHTTCCTTSHHHHHHHTC----------CCHHHHHHHHHT
T ss_pred HHHHHHCCCcchHHHHHHHhccccccccccCCCHHHHHHHHHH
Confidence 54 2 1 2222 34456799999988753
No 119
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=41.51 E-value=56 Score=39.59 Aligned_cols=87 Identities=14% Similarity=0.154 Sum_probs=66.1
Q ss_pred CCCcHHHHHHHHHHHHhhCChHHHHHHHHHHHhhcCCCchHhhhHhhcCCCCCcCcccCCCCHHHHHHHHHHHhCCCcCh
Q 001082 5 EETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDS 84 (1160)
Q Consensus 5 ~~~~F~~l~~lle~i~~~~~~~~K~~~l~~~l~~~~~~~~~~p~lrLllp~~d~er~~ygike~~L~k~~~~~lgl~~~s 84 (1160)
+++.-.++-+.|++|...++...+..+|..++... ++.+.-.++|+|+.++. .|++++++..+++.
T Consensus 116 ~~LTv~~V~~~L~~ia~~~g~~sq~~~l~~l~~~~-~~~E~k~l~R~i~~~lr-----iG~~e~~vl~a~~~-------- 181 (579)
T 3l2p_A 116 SLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRC-TANDLKCIIRLIKHDLK-----MNSGAKHVLDALDP-------- 181 (579)
T ss_dssp CCCBHHHHHHHHHHHHTCCSHHHHHHHHHHHHTTC-CSHHHHHHHHHHTTCCS-----SSCCHHHHHHTTCT--------
T ss_pred CCccHHHHHHHHHHHHhccCcHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhhh-----cccchhHHHHHhCH--------
Confidence 46788999999999999998877788899998765 57889999999998873 59999888776642
Q ss_pred HHHHHHhhhhcCCCCCCCCCHHHHHHHHhh
Q 001082 85 ADAVRLINWRKGGAAPNAGNFPMVAAEVLQ 114 (1160)
Q Consensus 85 ~~~~~L~~wk~~~~~~~~GD~~~~a~~vl~ 114 (1160)
++.++.+ .++||+.++..++.
T Consensus 182 -~a~~~~~--------~~~~l~~v~~~~~~ 202 (579)
T 3l2p_A 182 -NAYEAFK--------ASRNLQDVVERVLH 202 (579)
T ss_dssp -THHHHHH--------HSCCHHHHHHHHHH
T ss_pred -HHHHHHh--------hcCCHHHHHHHHHh
Confidence 2323222 24688887766543
No 120
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=33.87 E-value=33 Score=34.23 Aligned_cols=49 Identities=16% Similarity=0.252 Sum_probs=35.8
Q ss_pred Cccc-CeEEEEEcCCCC-CC---hHH-------HHHHHHHcCCEEEecCCCCceEEEEecC
Q 001082 656 SIFS-DMVFYFVNVPPA-YS---LDS-------LHKMVVENGGTFSMNLNNSVTHCVAADN 704 (1160)
Q Consensus 656 ~lF~-G~~F~vv~~~~~-~~---k~e-------LeklI~~~GG~iv~n~~~s~Th~Ia~~~ 704 (1160)
.+|. ++.||+-+.++. .+ +.+ |.+-+...|+++++-++..+||+|..-+
T Consensus 57 kifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R~ 117 (160)
T 3qbz_A 57 KIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRS 117 (160)
T ss_dssp HHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESSC
T ss_pred HhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecCc
Confidence 5887 899999765532 22 222 3356779999999999989999997554
No 121
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=25.32 E-value=68 Score=30.47 Aligned_cols=34 Identities=35% Similarity=0.542 Sum_probs=27.2
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEec
Q 001082 655 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMN 691 (1160)
Q Consensus 655 s~lF~G~~F~vv~~~~~~~k~eLeklI~~~GG~iv~n 691 (1160)
..||+|.+|++++-.. -..|..+|...||...-.
T Consensus 11 ~~LF~GKtFvFLn~KQ---~kkl~~aV~~~GG~~~l~ 44 (118)
T 2k2w_A 11 KSIFKDKVFLFLNAKQ---YKKLSPAVLFGGGKTDLL 44 (118)
T ss_dssp SCSSTTCEEEESCSST---HHHHHHHHHHTTCEEECC
T ss_pred HhhccCCEEEEeCHHH---HHHHHHHHHhcCceEEec
Confidence 4699999999987542 467888999999998543
No 122
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=24.18 E-value=31 Score=23.60 Aligned_cols=16 Identities=50% Similarity=0.775 Sum_probs=12.4
Q ss_pred cccccCCCCCCCcccc
Q 001082 970 GKRKRGRPAGGSAKKR 985 (1160)
Q Consensus 970 ~~~~~~~~~~~~~~~~ 985 (1160)
.+|-||||.|+-+|..
T Consensus 4 pKrpRgRpkGSKNk~~ 19 (26)
T 2ezd_A 4 PKRPRGRPKGSKNKGA 19 (26)
T ss_dssp CCCCSSCCTTCCCCSC
T ss_pred CcCCCCCcCcccccCc
Confidence 3678999999877654
Done!