Query 001083
Match_columns 1160
No_of_seqs 417 out of 2315
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 10:10:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001083.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001083hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l2p_A DNA ligase 3; DNA ligas 100.0 1.6E-99 5E-104 920.0 56.1 553 4-604 4-578 (579)
2 2hiv_A Thermostable DNA ligase 100.0 3.6E-94 1.2E-98 882.5 53.4 551 3-605 17-608 (621)
3 3gde_A DNA ligase; DNA-binding 100.0 3.4E-93 1.2E-97 862.3 52.9 529 7-604 4-552 (558)
4 2cfm_A Thermostable DNA ligase 100.0 3E-92 1E-96 858.0 53.4 533 7-604 1-552 (561)
5 1x9n_A DNA ligase I; 5'-adenyl 100.0 1.1E-92 3.8E-97 875.0 45.8 555 4-605 53-670 (688)
6 1vs0_A Putative DNA ligase-lik 100.0 1E-58 3.5E-63 526.0 24.9 307 218-593 3-309 (310)
7 1a0i_A DNA ligase; DNA replica 100.0 1.9E-49 6.4E-54 457.9 23.5 305 216-583 3-348 (348)
8 1fvi_A Chlorella virus DNA lig 100.0 1.7E-44 5.8E-49 406.8 22.7 265 223-588 2-297 (297)
9 3ii6_X DNA ligase 4; XRCC4, NH 100.0 1.9E-41 6.4E-46 376.1 21.5 248 653-911 6-263 (263)
10 4htp_A DNA ligase 4; helical d 100.0 2.6E-41 8.7E-46 368.6 21.1 215 1-216 8-238 (240)
11 1z56_C DNA ligase IV; DNA repa 100.0 2.6E-35 9E-40 327.5 7.6 246 654-912 2-262 (264)
12 1p16_A GTP--RNA, mRNA capping 100.0 1.8E-32 6.2E-37 320.5 18.9 313 194-604 20-364 (395)
13 1ckm_A MRNA capping enzyme; nu 100.0 3.2E-28 1.1E-32 277.6 19.4 235 242-602 72-312 (330)
14 3vnn_A DNA ligase 4; non-homol 99.9 1E-25 3.5E-30 225.8 8.9 127 247-377 1-135 (139)
15 3olc_X DNA topoisomerase 2-bin 99.8 4.4E-21 1.5E-25 216.1 15.7 183 655-915 103-288 (298)
16 3kyh_C MRNA-capping enzyme sub 99.8 3E-21 1E-25 225.3 9.6 186 240-458 60-263 (461)
17 3rtx_A MRNA-capping enzyme; gu 99.8 4E-21 1.4E-25 218.9 8.8 176 243-457 61-247 (343)
18 1kzy_C Tumor suppressor P53-bi 99.8 5.6E-19 1.9E-23 195.3 14.4 196 651-910 9-250 (259)
19 1l0b_A BRCA1; TANDEM-BRCT, thr 99.8 9.1E-19 3.1E-23 190.0 15.5 199 656-915 3-216 (229)
20 1t15_A Breast cancer type 1 su 99.7 1.3E-17 4.4E-22 178.8 15.8 195 659-913 3-212 (214)
21 3u3z_A Microcephalin; DNA repa 99.7 1.3E-17 4.3E-22 177.4 13.6 181 663-912 14-198 (199)
22 2vxb_A DNA repair protein RHP9 99.7 2.9E-17 9.8E-22 179.6 16.2 204 656-905 1-240 (241)
23 2nte_A BARD-1, BRCA1-associate 99.7 1E-16 3.5E-21 171.8 16.4 181 660-908 2-210 (210)
24 2etx_A Mediator of DNA damage 99.7 9.9E-17 3.4E-21 171.9 13.9 194 656-916 8-206 (209)
25 2ebw_A DNA repair protein REV1 99.5 2.2E-14 7.4E-19 134.7 8.9 88 653-742 8-96 (97)
26 3al2_A DNA topoisomerase 2-bin 99.5 9.5E-14 3.2E-18 151.2 12.3 211 659-913 8-230 (235)
27 3sqd_A PAX-interacting protein 99.5 1.8E-13 6E-18 147.5 13.8 191 657-911 13-218 (219)
28 1wf6_A Similar to S.pombe -RAD 99.4 1.4E-13 4.9E-18 136.6 9.7 94 798-914 35-129 (132)
29 4id3_A DNA repair protein REV1 99.4 4.6E-13 1.6E-17 124.0 8.2 84 654-740 4-90 (92)
30 3pc6_A DNA repair protein XRCC 99.4 1.5E-12 5.2E-17 123.1 10.0 93 801-915 5-98 (104)
31 3l46_A Protein ECT2; alternati 99.3 1.5E-12 5E-17 125.0 8.9 91 800-915 18-109 (112)
32 2vug_A PAB1020; RNA, ligase, A 99.3 8.8E-12 3E-16 144.4 17.2 156 244-446 94-253 (389)
33 2d8m_A DNA-repair protein XRCC 99.3 1E-12 3.6E-17 129.9 8.0 91 654-746 19-110 (129)
34 2cou_A ECT2 protein; BRCT doma 99.3 2E-12 6.8E-17 124.0 8.7 90 800-914 9-99 (109)
35 3l3e_A DNA topoisomerase 2-bin 99.3 1.8E-12 6.3E-17 123.9 6.8 89 652-741 10-102 (107)
36 4id3_A DNA repair protein REV1 99.3 5E-12 1.7E-16 117.0 9.1 86 800-912 4-92 (92)
37 3pc6_A DNA repair protein XRCC 99.3 5.4E-12 1.9E-16 119.3 8.7 87 655-741 5-94 (104)
38 3l46_A Protein ECT2; alternati 99.3 1.7E-12 6E-17 124.5 5.1 85 655-740 19-104 (112)
39 2ep8_A Pescadillo homolog 1; A 99.3 3.8E-12 1.3E-16 119.8 7.3 81 653-739 8-99 (100)
40 3pa6_A Microcephalin; BRCT dom 99.3 7.9E-12 2.7E-16 119.2 8.5 95 800-915 4-99 (107)
41 2cou_A ECT2 protein; BRCT doma 99.2 2.1E-12 7.1E-17 123.9 3.9 88 654-742 9-97 (109)
42 2coe_A Deoxynucleotidyltransfe 99.2 2.6E-11 8.8E-16 117.2 10.1 96 799-910 16-112 (120)
43 3qwu_A DNA ligase; structural 99.2 1.2E-10 4E-15 132.2 14.8 151 238-427 66-222 (370)
44 2ebw_A DNA repair protein REV1 99.2 2.8E-11 9.5E-16 113.4 7.6 86 800-912 9-96 (97)
45 3l41_A BRCT-containing protein 99.2 5.7E-11 1.9E-15 127.9 10.8 193 660-909 8-212 (220)
46 1wf6_A Similar to S.pombe -RAD 99.2 7.8E-11 2.7E-15 116.8 10.5 98 643-742 26-127 (132)
47 2jw5_A DNA polymerase lambda; 99.1 7.9E-12 2.7E-16 119.1 2.2 98 799-913 7-105 (106)
48 2d8m_A DNA-repair protein XRCC 99.1 1.1E-10 3.8E-15 115.3 10.1 90 802-916 21-111 (129)
49 3olc_X DNA topoisomerase 2-bin 99.1 1.3E-10 4.5E-15 130.8 10.5 148 679-909 28-187 (298)
50 3l3e_A DNA topoisomerase 2-bin 99.1 1E-10 3.5E-15 111.7 8.2 93 800-914 12-105 (107)
51 2ep8_A Pescadillo homolog 1; A 99.0 1.1E-09 3.8E-14 103.0 9.5 80 800-910 9-100 (100)
52 3pa6_A Microcephalin; BRCT dom 99.0 1.1E-09 3.7E-14 104.4 8.3 86 655-740 5-94 (107)
53 3pc7_A DNA ligase 3; DNA repai 98.9 9.2E-10 3.2E-14 100.4 5.8 73 800-906 13-87 (88)
54 2dun_A POL MU, DNA polymerase 98.8 4.5E-09 1.5E-13 102.0 7.2 97 801-911 8-106 (133)
55 3pc7_A DNA ligase 3; DNA repai 98.8 1.7E-09 6E-14 98.6 3.9 73 654-736 13-87 (88)
56 3ef0_A RNA polymerase II subun 98.8 8.1E-09 2.8E-13 119.2 9.1 86 655-740 280-370 (372)
57 3ef1_A RNA polymerase II subun 98.7 7.6E-09 2.6E-13 120.9 7.2 87 654-740 349-440 (442)
58 3ef0_A RNA polymerase II subun 98.6 3.4E-08 1.2E-12 114.0 7.8 91 801-911 280-371 (372)
59 3u3z_A Microcephalin; DNA repa 98.6 1.6E-08 5.3E-13 107.3 4.4 79 654-739 116-195 (199)
60 2jw5_A DNA polymerase lambda; 98.6 2E-08 6.8E-13 95.6 3.3 90 653-742 7-104 (106)
61 3ef1_A RNA polymerase II subun 98.5 6.5E-08 2.2E-12 113.1 7.1 90 802-911 351-441 (442)
62 1t15_A Breast cancer type 1 su 98.5 1.2E-07 4.1E-12 101.1 7.7 87 654-740 112-209 (214)
63 3sqd_A PAX-interacting protein 98.4 2.2E-07 7.6E-12 99.9 7.7 91 800-914 10-100 (219)
64 2coe_A Deoxynucleotidyltransfe 98.4 4.1E-07 1.4E-11 87.9 7.6 91 654-744 17-116 (120)
65 2nte_A BARD-1, BRCA1-associate 98.4 5.7E-07 1.9E-11 95.9 9.5 85 806-912 2-87 (210)
66 1l7b_A DNA ligase; BRCT, autos 98.4 3.8E-07 1.3E-11 84.4 6.9 75 655-730 5-80 (92)
67 1l0b_A BRCA1; TANDEM-BRCT, thr 98.4 3.6E-07 1.2E-11 98.7 7.8 87 656-743 116-213 (229)
68 2etx_A Mediator of DNA damage 98.4 4.2E-07 1.4E-11 97.0 7.2 87 801-914 7-93 (209)
69 2k6g_A Replication factor C su 98.3 1.8E-06 6.2E-11 82.3 8.2 77 655-731 30-108 (109)
70 3ii6_X DNA ligase 4; XRCC4, NH 98.2 2.2E-06 7.4E-11 94.8 9.1 88 800-912 7-96 (263)
71 1kzy_C Tumor suppressor P53-bi 98.2 1.7E-06 5.8E-11 95.4 7.2 101 800-913 12-137 (259)
72 1z56_C DNA ligase IV; DNA repa 98.2 6.2E-07 2.1E-11 99.1 3.6 87 653-740 156-260 (264)
73 2ebu_A Replication factor C su 98.2 3.3E-06 1.1E-10 80.8 8.0 77 655-731 20-98 (112)
74 2cok_A Poly [ADP-ribose] polym 98.2 2.8E-06 9.5E-11 81.5 7.3 83 655-738 8-104 (113)
75 2dun_A POL MU, DNA polymerase 98.1 2.2E-06 7.5E-11 83.3 5.2 92 654-745 7-110 (133)
76 2vxb_A DNA repair protein RHP9 98.1 4.2E-06 1.4E-10 91.2 7.5 92 802-914 1-119 (241)
77 3al2_A DNA topoisomerase 2-bin 98.0 8.1E-06 2.8E-10 88.6 9.1 88 804-915 7-97 (235)
78 3l41_A BRCT-containing protein 98.0 5.4E-06 1.8E-10 89.1 6.7 84 804-914 6-89 (220)
79 1ik9_C DNA ligase IV; DNA END 97.9 6.3E-06 2.2E-10 62.7 2.7 34 747-780 2-35 (37)
80 2hvq_A ORF1, hypothetical 37.6 97.6 0.00012 4.3E-09 83.2 10.2 107 241-367 25-146 (335)
81 2l42_A DNA-binding protein RAP 97.6 3.5E-05 1.2E-09 70.1 4.0 79 654-739 8-92 (106)
82 1s68_A RNA ligase 2; ribonucle 97.6 0.00022 7.6E-09 78.0 11.1 107 241-367 24-145 (249)
83 1ta8_A DNA ligase, NAD-depende 97.6 5.9E-05 2E-09 85.1 6.3 173 246-445 114-319 (332)
84 2l42_A DNA-binding protein RAP 97.4 8.8E-05 3E-09 67.6 3.7 88 801-915 9-98 (106)
85 1b04_A Protein (DNA ligase); D 97.4 0.00014 4.8E-09 81.7 5.9 173 245-444 107-312 (318)
86 3t7k_A RTT107, regulator of TY 97.3 0.002 6.9E-08 69.1 13.8 167 673-902 34-240 (256)
87 4glw_A DNA ligase; inhibitor, 97.1 0.0007 2.4E-08 75.9 7.6 155 243-426 100-280 (305)
88 4glx_A DNA ligase; inhibitor, 96.9 0.0026 8.9E-08 77.1 10.6 225 245-510 108-368 (586)
89 1l7b_A DNA ligase; BRCT, autos 96.8 0.0019 6.6E-08 59.5 6.8 76 800-900 4-80 (92)
90 1zau_A DNA ligase; AMP; HET: D 96.6 0.00012 4.2E-09 82.4 -3.2 168 245-439 116-319 (328)
91 3uq8_A DNA ligase; adenylated 96.6 0.0036 1.2E-07 70.4 8.4 156 246-427 108-292 (322)
92 2k6g_A Replication factor C su 96.5 0.0066 2.2E-07 57.7 8.3 78 801-901 30-108 (109)
93 3jsl_A DNA ligase; NAD+-depend 96.4 0.004 1.4E-07 69.8 7.3 175 244-445 104-311 (318)
94 1xdn_A RNA editing ligase MP52 96.3 0.019 6.5E-07 62.5 11.1 120 243-367 31-190 (277)
95 2ebu_A Replication factor C su 96.3 0.011 3.8E-07 56.3 8.3 79 800-901 19-98 (112)
96 2c5u_A RNA ligase, T4 RNA liga 96.2 0.028 9.7E-07 64.8 12.8 142 245-446 93-246 (375)
97 1xk5_A Snurportin-1; protein-R 96.2 0.016 5.4E-07 60.7 9.7 179 225-447 5-186 (204)
98 3gjx_B Snurportin-1; transport 95.9 0.02 6.8E-07 64.2 9.4 179 225-447 106-287 (365)
99 1dgs_A DNA ligase; AMP complex 95.8 0.0015 5.2E-08 80.2 0.0 79 655-734 585-664 (667)
100 2owo_A DNA ligase; protein-DNA 95.7 0.017 5.7E-07 71.2 8.5 193 246-472 109-338 (671)
101 2cok_A Poly [ADP-ribose] polym 95.7 0.031 1.1E-06 53.4 8.4 82 802-908 9-104 (113)
102 2owo_A DNA ligase; protein-DNA 95.3 0.0029 9.8E-08 77.8 0.0 75 655-729 595-670 (671)
103 3sgi_A DNA ligase; HET: DNA AM 95.3 0.0083 2.9E-07 72.8 3.8 195 246-474 117-350 (615)
104 4e6n_A Metallophosphoesterase; 95.0 0.14 4.6E-06 57.7 12.1 183 235-430 68-337 (427)
105 1dgs_A DNA ligase; AMP complex 94.8 0.042 1.4E-06 67.5 8.1 192 246-472 110-336 (667)
106 2hiv_A Thermostable DNA ligase 92.4 0.11 3.8E-06 63.8 6.0 87 122-208 19-120 (621)
107 4gns_A Chitin biosynthesis pro 89.0 0.58 2E-05 46.7 6.3 84 658-741 162-253 (290)
108 3huf_A DNA repair and telomere 88.7 0.26 8.7E-06 54.9 3.9 68 658-729 113-186 (325)
109 3gde_A DNA ligase; DNA-binding 85.7 0.93 3.2E-05 54.9 6.8 85 124-208 4-103 (558)
110 2cfm_A Thermostable DNA ligase 85.4 0.68 2.3E-05 56.2 5.5 85 125-209 2-100 (561)
111 4gns_A Chitin biosynthesis pro 85.1 1.5 5.1E-05 43.8 6.6 96 802-915 160-257 (290)
112 3qbz_A DDK kinase regulatory s 83.1 1.6 5.6E-05 43.5 6.0 60 801-860 56-118 (160)
113 3t7k_A RTT107, regulator of TY 82.8 1.4 4.8E-05 47.4 5.8 69 835-915 41-122 (256)
114 1x9n_A DNA ligase I; 5'-adenyl 81.4 1.3 4.4E-05 55.1 5.7 87 121-207 53-156 (688)
115 3oq0_A DBF4, protein DNA52; DD 77.5 4.8 0.00016 39.9 7.1 61 800-860 17-80 (151)
116 3huf_A DNA repair and telomere 74.4 4.1 0.00014 45.3 6.5 60 831-900 127-187 (325)
117 3oq4_A DBF4, protein DNA52; DD 74.2 7.1 0.00024 37.9 7.2 56 805-860 6-63 (134)
118 4htp_A DNA ligase 4; helical d 59.5 10 0.00036 40.6 5.8 87 122-208 12-134 (240)
119 3l2p_A DNA ligase 3; DNA ligas 42.3 53 0.0018 39.8 8.8 86 5-113 116-201 (579)
120 3qbz_A DDK kinase regulatory s 36.2 32 0.0011 34.4 4.4 49 656-704 57-117 (160)
121 2k2w_A Recombination and DNA r 25.6 67 0.0023 30.5 4.5 34 655-691 11-44 (118)
122 2ezd_A High mobility group pro 24.4 30 0.001 23.6 1.3 16 970-985 4-19 (26)
123 2k2w_A Recombination and DNA r 20.1 1.1E+02 0.0038 29.1 4.8 36 800-848 10-45 (118)
No 1
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-99 Score=920.05 Aligned_cols=553 Identities=25% Similarity=0.418 Sum_probs=449.9
Q ss_pred CCCCcHHHHHHHHHHHHhhCChHHHHHHHHHHHhhcCCC----chHhhhHhhcCCCCCcCcccCCCCHHHHHHHHHHHhC
Q 001083 4 TEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDS----VDYFSALRLILPSLDRERGSYGLKESVLANCLIDALG 79 (1160)
Q Consensus 4 ~~~~~F~~l~~l~e~i~~~~~~~~K~~~l~~~l~~~~~~----~d~~p~lrLllP~~d~er~~ygike~~L~k~~~~~~g 79 (1160)
.++|+|++||++|++|++++++++|+.+|++||.++..+ .++|+++|+|+|..++ ++|||++++|+|+|++++|
T Consensus 4 ~~d~~F~~f~~l~~~ie~~s~r~~k~~il~~~~~~~~~~~~~~~~~y~~~~~l~P~~~~--~~~gi~ek~l~k~~~~~~g 81 (579)
T 3l2p_A 4 HKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFHGDVYLTVKLLLPGVIK--TVYNLNDKQIVKLFSRIFN 81 (579)
T ss_dssp SGGGBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCC-------CCHHHHHHHHCTTTSC--CCCSCCHHHHHHHHHHHHT
T ss_pred cccCcHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCCcccccchHHHHHHHhCCCccC--cccCCcHHHHHHHHHHHHC
Confidence 457999999999999999999999999999999998543 5899999999999974 6999999999999999999
Q ss_pred CCcChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhhc--CC-CCCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Q 001083 80 MSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQ--GM-ISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKT 156 (1160)
Q Consensus 80 l~~~s~~~~~L~~wk~~~~~~~~GD~~~~a~~vl~~r~--~~-~~~~LTi~eVn~~Ld~LA~~~~~~~k~~il~~ll~~~ 156 (1160)
++.+. ..++ | ..||||.+|..++..+. .. .+++|||.+||+.|++||..+|...+..+|..|+.+|
T Consensus 82 ~~~~~--~~~~--~-------~~GD~~~~~~~~~~~~~~~~~~~~~~LTv~~V~~~L~~ia~~~g~~sq~~~l~~l~~~~ 150 (579)
T 3l2p_A 82 CNPDD--MARD--L-------EQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRC 150 (579)
T ss_dssp SCHHH--HHHH--G-------GGSCHHHHHHHHHHSCSSSCCCSSCCCBHHHHHHHHHHHHTCCSHHHHHHHHHHHHTTC
T ss_pred cCHHH--HHHH--H-------HcCCHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHhccCcHHHHHHHHHHHHhC
Confidence 98753 3333 3 35999999888765432 22 3579999999999999999998888888999999999
Q ss_pred CHHHHHHHHHHHhhhhccCCcccccccccCccHHHHHhhhCCHHHHHHHHhhhhc---------cccccccccCCccccc
Q 001083 157 NAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQ---------RHKRQDIEVGKAVRPQ 227 (1160)
Q Consensus 157 t~~E~k~l~RiIlkdLriGi~e~til~~~hpda~~~~~~~~DL~~V~~~L~~~~~---------~~~~~~i~~g~p~~Pm 227 (1160)
|+.|+|||+|||+++||||+++++|+.+|||+|.++|++++||+.||+.+.+... .+....+.+|.||+||
T Consensus 151 ~~~E~k~l~R~i~~~lriG~~e~~vl~a~~~~a~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~PM 230 (579)
T 3l2p_A 151 TANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTPVQPM 230 (579)
T ss_dssp CSHHHHHHHHHHTTCCSSSCCHHHHHHTTCTTHHHHHHHSCCHHHHHHHHHHHHHSCC--------CCCCCCTTSCCCCC
T ss_pred CHHHHHHHHHHHHhhhhcccchhHHHHHhCHHHHHHHhhcCCHHHHHHHHHhhchhhhcccccccccccccCCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999988764211 1223557889999999
Q ss_pred cccccCChHHHHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEeCCCCCCCc-chhhHHHHHHHhc-ccCceeeceeEEE
Q 001083 228 LAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGHAMSKIIEQNV-LVDRCILDGEMLV 305 (1160)
Q Consensus 228 LA~~~~~~~~~~~~~~~~~~~~E~K~DGeR~qih~~g~~v~~fSR~g~d~t~-~~~~l~~~l~~~~-~~~~~ILDGElv~ 305 (1160)
||+++.+++++++++. ..|++|+||||+|||+|++|+++++|||+|++++. ..+.+.+.+...+ ...+||||||||+
T Consensus 231 LA~~~~~~~~~~~~~~-~~~~~E~K~DG~R~qih~~g~~v~l~SR~g~~~~p~~~~~l~~~l~~~~~~~~~~iLDGElv~ 309 (579)
T 3l2p_A 231 LAEACKSVEYAMKKCP-NGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDYIPQAFPGGHSMILDSEVLL 309 (579)
T ss_dssp EEEECCCHHHHHHHCT-TCEEEEECCCSEEEEEEEETTEEEEECTTSCBCCGGGTTTGGGTHHHHSTTCSEEEEEEEEEE
T ss_pred cCCcCCCHHHHHhhCC-CCeEEEEccCcEEEEEEEECCEEEEECCCCCccChhHHHHHHHHHHHhcCcCCceEEEeEEEE
Confidence 9999999988888875 46999999999999999999999999999999842 1222333332233 2468999999999
Q ss_pred EeCCCCcccccccHHHHHHHhccCCCCCCccEEEEEEeeeecCCcccccCCHHHHHHHHHHhhccCCCcceeeccCCCCC
Q 001083 306 WDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLN 385 (1160)
Q Consensus 306 ~d~~~~~~~pF~~lq~i~~~~r~~~~~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~~~ 385 (1160)
||+.+++++||+.++...+.. . .+ .+++|++|||||+||++|+++||.+||++|++++.+.++++.+..
T Consensus 310 ~d~~~g~~~~F~~L~~~~~~~---~-~~-~~v~~~vFDlL~l~G~~L~~~Pl~eRr~~L~~~~~~~~~~i~~~~------ 378 (579)
T 3l2p_A 310 IDNKTGKPLPFGTLGVHKKAA---F-QD-ANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSE------ 378 (579)
T ss_dssp BCTTTCCBCCGGGGSHHHHHH---C-SS-CCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHCCCBTTTEEECC------
T ss_pred EeCCCCcccCHHHHHHHhhhh---c-cc-CCeEEEEEEeeccCCCccccCCHHHHHHHHHHHhhcCCCeEEEee------
Confidence 998778889999887533221 1 12 349999999999999999999999999999999988776654321
Q ss_pred ccccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEccccccC---CCcccEEEEEEEe
Q 001083 386 SHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA---GSDLDVLIIGGYY 462 (1160)
Q Consensus 386 ~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKlKpeY~~~---g~~lDlvIIG~~~ 462 (1160)
...+.+.+++.++|++++++|+||||+|+++|+|.||+| +|+|+|++|+++ ++++|+||||+++
T Consensus 379 -----------~~~~~~~~~~~~~~~~a~~~g~EGlv~K~~ds~Y~~Grr--~WlK~K~~y~~~g~~~~t~D~vViG~~~ 445 (579)
T 3l2p_A 379 -----------MKRVTKALDLADMITRVIQEGLEGLVLKDVKGTYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFY 445 (579)
T ss_dssp -----------EEEECSHHHHHHHHHHHHHTTCCCEEEEESSCCCCTTCE--EEEEECTTTCC---CCEEEEEEEEEEEC
T ss_pred -----------eEEcCCHHHHHHHHHHHHHhCCCceEEecCcCCCCCCCe--eeEEEechhhccccccccccEEEEEEEe
Confidence 234567899999999999999999999999999999988 899999999874 5799999999999
Q ss_pred CCCCCCCccceEEEEEecCCCCCCCCceEEEEeeecCCCCHHHHHHHHHhhcccccccCCCCCCCCCcccccCCCCCCCc
Q 001083 463 GSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPD 542 (1160)
Q Consensus 463 G~Grr~g~~gsfllg~~d~~~~~~~~~~~~s~~kVgtG~sdeel~~l~~~l~~~~~~~~~~~~~pP~~~~~~~~~~~~Pd 542 (1160)
|+|+++|.+|+|+||++|+++ +.|+++||||||||++++++|.+.|++++... +...+|.|+.+. ....||
T Consensus 446 G~Gkr~g~~g~lllg~~d~~~-----~~l~~vgkvgtGftd~~l~~l~~~l~~~~~~~--~~~~~~~~~~~~--~~~~pd 516 (579)
T 3l2p_A 446 GQGSKGGMMSIFLMGCYDPGS-----QKWCTVTKCAGGHDDATLARLQNELDMVKISK--DPSKIPSWLKVN--KIYYPD 516 (579)
T ss_dssp CCTTSCSSCCEEEEEEECTTT-----SSEEEEEEECTTCCHHHHHHTTTSSCCCCCCC----------------------
T ss_pred CCCCCCCceeEEEEEEEeCCC-----CeEEEecCccCCCCHHHHHHHHHHhhcccccc--CCccCCceeecC--CCCCCc
Confidence 999999999999999998654 27999999999999999999999999987642 112246677653 356899
Q ss_pred EEEeCCcceEEEEEEeeeeeeeccccc-CCceeeCceeeeeecCCCccCcCCHHHHHHHHHcc
Q 001083 543 VWIESPEKSIILSITSDIRTIRSEVFS-APYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSS 604 (1160)
Q Consensus 543 vwi~~P~~s~Vlev~~~i~~~~s~~~~-~g~tLRFPR~~riR~DK~~~d~~t~~el~el~~~~ 604 (1160)
+|+..|..++||||+++.. ..|+.|+ .|+|||||||.|||+||+|+||+|++++.+||+.+
T Consensus 517 ~~~~~P~~~~V~Ei~~~~i-~~S~~~~~~G~sLRFPR~~riR~DK~~~ea~t~~~l~~l~~~~ 578 (579)
T 3l2p_A 517 FIVPDPKKAAVWEITGAEF-SKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLS 578 (579)
T ss_dssp --------CEEEEEEESCE-EECTTSSSTTEEESSCEECCCCSSCCSSSSCBHHHHHHHHHTC
T ss_pred EEEecCCCCeEEEEEeeEE-eecCCcccCCEEEECCeEEEEeCCCChHHCCCHHHHHHHHhhc
Confidence 9985588889999997543 3677775 79999999999999999999999999999999754
No 2
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=100.00 E-value=3.6e-94 Score=882.50 Aligned_cols=551 Identities=26% Similarity=0.468 Sum_probs=471.5
Q ss_pred CCCCCcHHHHHHHHHHHHhhCChHHHHHHHHHHHhhcCCCchHhhhHhhc----CCCCCcCcccCCCCHHHHHHHHHHHh
Q 001083 3 KTEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLI----LPSLDRERGSYGLKESVLANCLIDAL 78 (1160)
Q Consensus 3 ~~~~~~F~~l~~l~e~i~~~~~~~~K~~~l~~~l~~~~~~~d~~p~lrLl----lP~~d~er~~ygike~~L~k~~~~~~ 78 (1160)
...+|+|+.||++|++|+.++++++|+++|.+||..+ .+++++|+++|+ +|..+. |++|||+++.|++++++++
T Consensus 17 ~~~~~~f~~~~~~~~~l~~t~~r~~k~~~l~~~~~~~-~~~d~~~~~~ll~~~l~P~~~~-~~~~gi~~~~L~k~~~~~~ 94 (621)
T 2hiv_A 17 RGSHMEFKVIAEYFDKLEKISSRLQLTALLADLLSKS-DKTIIDKVVYIIQGKLWPDFLG-YPELGIGEKFLIKAISIAT 94 (621)
T ss_dssp ----CBTHHHHHHHHHHHHCCCHHHHHHHHHHHHHTS-CGGGHHHHHHHTTTCSSCGGGC-CCCCCCCHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHhc-CchHHHHHHHHHhCCcCccccc-ccccCCCHHHHHHHHHHHH
Confidence 3567999999999999999999999999999999986 478899999997 566663 4499999999999999999
Q ss_pred CCCcChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhhcC--C-------CCCCCcHHHHHHHHHHHHhhhh---HHHHH
Q 001083 79 GMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQG--M-------ISGGLTIKELNDLLDRLASSEN---RAEKI 146 (1160)
Q Consensus 79 gl~~~s~~~~~L~~wk~~~~~~~~GD~~~~a~~vl~~r~~--~-------~~~~LTi~eVn~~Ld~LA~~~~---~~~k~ 146 (1160)
|++++.... .| ..+||||++|+.+++++.. . .+++|||.+||+.|++||..+| +.+|.
T Consensus 95 g~~~~~~~~----~~------~~~GDlg~~a~~~~~~~~~~~~~~f~~~~~~~~ltv~~V~~~L~~la~~~g~~s~~~k~ 164 (621)
T 2hiv_A 95 NTDENSVEN----LY------KTIGDLGEVARRLKSKQQSTGILGFLGTTSKESLTVDEVYSTLSKVALTTGEGSRDLKI 164 (621)
T ss_dssp TCCHHHHHH----HH------HHHCCHHHHHHHHHHTC-------------CCCCBHHHHHHHHHHHHHCCSTTHHHHHH
T ss_pred CcCHHHHHH----HH------HhcCCHHHHHHHHHhhccccccccccccCCCCCCcHHHHHHHHHHHHhccCcccHHHHH
Confidence 999765432 34 3479999999999987652 1 3678999999999999999876 46788
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhhhhccCCcccccccc----cC------ccHHHHHhhhCCHHHHHHHHhhhh-ccccc
Q 001083 147 SVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHE----FH------PDAEDLFNVTCDLKLVCEKLKDRN-QRHKR 215 (1160)
Q Consensus 147 ~il~~ll~~~t~~E~k~l~RiIlkdLriGi~e~til~~----~h------pda~~~~~~~~DL~~V~~~L~~~~-~~~~~ 215 (1160)
.+|..||.+|++.|++||+|||+++||||+++++|+.+ |+ ++++++|++++||+.||+.|.++. .++..
T Consensus 165 ~~l~~ll~~~~~~E~k~l~Rli~~~lRiG~~~~~vl~ala~a~~~~~~~~~~v~~~~~~~~dl~~v~~~l~~~g~~~l~~ 244 (621)
T 2hiv_A 165 RLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDATVLDAMAIAFGGGQSASEIIERAYNLRADLGNIAKIIVEKGIEALKT 244 (621)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHSSSGGGHHHHHHHHHHSCCHHHHHHHHHHHCGGGGTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCCccCccHHHHHHHHHHHhccccccHHHHHHHHhcCCCHHHHHHHHHhcCcccccc
Confidence 99999999999999999999999999999999999984 33 568899999999999999998743 45677
Q ss_pred cccccCCccccccccccCChHHHHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEeCCCCCCCcchhhHHHHHHHhcccC
Q 001083 216 QDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVD 295 (1160)
Q Consensus 216 ~~i~~g~p~~PmLA~~~~~~~~~~~~~~~~~~~~E~K~DGeR~qih~~g~~v~~fSR~g~d~t~~~~~l~~~l~~~~~~~ 295 (1160)
..+++|.|++||||+++..++++++++++ +|++|+||||+|||+|++++.+++|||+|+++|..+|++.+.+...+...
T Consensus 245 ~~~~~~~pv~PmLA~~~~~~~~~l~~~~~-~~~~E~K~DG~R~qi~~~g~~v~l~SR~g~~~t~~fP~l~~~~~~~l~~~ 323 (621)
T 2hiv_A 245 LKPQVGIPIRPMLAERLSNPEEILKKMGG-NAIVDYKYDGERAQIHKKEDKIFIFSRRLENITSQYPDVVDYVSKYIEGK 323 (621)
T ss_dssp CCCCTTSCCCCCEEEECSCHHHHHHHTTT-CEEEEEECSSEEEEEEEETTEEEEECTTCCBCGGGCHHHHHHHHHHBCCS
T ss_pred CCCCCCCCCCCeeCCccCchhHHHhhcCC-cEEEEEEEcceeEEEEEcCCEEEEEcCCCcCcHhhhhhHHHHHHHhCCCc
Confidence 88999999999999999988888888854 79999999999999999999999999999999999999988775556568
Q ss_pred ceeeceeEEEEeCCCCcccccccHHHHHHHhccCCC--CCCccEEEEEEeeeecCCcccccCCHHHHHHHHHHhhccCCC
Q 001083 296 RCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLS--SDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKG 373 (1160)
Q Consensus 296 ~~ILDGElv~~d~~~~~~~pF~~lq~i~~~~r~~~~--~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~ 373 (1160)
+||||||||+||+.+++++||+.+|.. .+ +.... ....+++|++|||||+||++|++.||.+|+++|++++.+. +
T Consensus 324 ~~iLDGElv~~d~~~g~~l~F~~L~~r-~~-~~~~~~~~~~~~v~~~vFDlL~l~G~~l~~~pl~eRr~~L~~~~~~~-~ 400 (621)
T 2hiv_A 324 EFIIEGEIVAIDPESGEMRPFQELMHR-KR-KSDIYEAIKEYPVNVFLFDLMYYEDVDYTTKPLEARRKLLESIVKPN-D 400 (621)
T ss_dssp SEEEEEEEEEBCTTTCCBCCTHHHHHH-HH-CSCHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC-S
T ss_pred CeEEeEEEEEeecCCCCcCCHHHHhhh-cc-ccchhhhcccCceEEEEEeccccCCCccccCCHHHHHHHHHHHhCcC-C
Confidence 999999999999777888999888765 21 11110 0123499999999999999999999999999999999764 4
Q ss_pred cceeeccCCCCCccccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecC--CCCCcCCCCCCCeEEEccccccC-C
Q 001083 374 RLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDL--GSKWEPGDRSGKWLKLKPEYIRA-G 450 (1160)
Q Consensus 374 ~~~i~~p~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~--ds~Y~pGkRs~~WlKlKpeY~~~-g 450 (1160)
++.+. ....+.+.+++.++|++++++|+||||+|++ +|+|+||+|+.+|+|+|++|+++ |
T Consensus 401 ~i~~~-----------------~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~~~ds~Y~~G~Rs~~WlK~K~~~~~~~~ 463 (621)
T 2hiv_A 401 YVKIA-----------------HHIQANNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMA 463 (621)
T ss_dssp SEEEC-----------------CEEEESSHHHHHHHHHHHHHTTCCEEEEECCSTTCCCCTTCEEEEEEEEETTCTTSSC
T ss_pred cEEEe-----------------eeEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCCCccCCCcCCCeEEEechhccCcC
Confidence 44331 1345678999999999999999999999999 99999999999999999999984 7
Q ss_pred CcccEEEEEEEeCCCCCCCccceEEEEEecCCCCCCCCceEEEEeeecCCCCHHHHHHHHHhhcccccccCCCCCCCCCc
Q 001083 451 SDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSF 530 (1160)
Q Consensus 451 ~~lDlvIIG~~~G~Grr~g~~gsfllg~~d~~~~~~~~~~~~s~~kVgtG~sdeel~~l~~~l~~~~~~~~~~~~~pP~~ 530 (1160)
+++|++|||+++|+|+|+|.+|+|+|||+++++ +.|+++|+||||||++++++|.+.|++++... .||.+
T Consensus 464 dt~D~vViG~~~g~Gkr~g~~g~lllg~~d~~~-----~~l~~vgkvgtGftd~~~~~l~~~l~~~~~~~-----~p~~~ 533 (621)
T 2hiv_A 464 DTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKT-----DSFESVCKVASGFSDEQLDELQKKLMEIKRDV-----KHPRV 533 (621)
T ss_dssp EEEEEEEEEEEECSGGGTTSEEEEEEEEEETTT-----TEEEEEEEECBSCCHHHHHHHHHHHHTTEESS-----CCTTE
T ss_pred ceeEEEEEEEEcCCCCCCCcccceEEEEEeCCC-----CeEEEEeeeCCCCCHHHHHHHHHHHhhhccCC-----CCCCc
Confidence 899999999999999999999999999998653 38999999999999999999999999998651 24432
Q ss_pred ccccCCCCCCCcEEEeCCcceEEEEEEeeeeeeeccccc---------CCceeeCceeeeeecCCCccCcCCHHHHHHHH
Q 001083 531 YQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFS---------APYSLRFPRIDRVRYDKPWHDCLDVQSFVELV 601 (1160)
Q Consensus 531 ~~~~~~~~~~Pdvwi~~P~~s~Vlev~~~i~~~~s~~~~---------~g~tLRFPR~~riR~DK~~~d~~t~~el~el~ 601 (1160)
. ...+|++||+ |. +|+||+++..+ .|+.|+ .|++||||||+|||+||+|+||+|++++.+|+
T Consensus 534 ~-----~~~~~~vwv~-P~--~V~EV~~~~~t-~s~~~~a~~~~~~~~~G~sLRfPrf~r~R~DK~~~ea~t~~~l~~l~ 604 (621)
T 2hiv_A 534 N-----SKMEPDIWVE-PV--YVAEIIGSEIT-ISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILEMY 604 (621)
T ss_dssp E-----CSSCCSEEEC-SC--CEEEEEESEEE-EETTCCTTTTTSSTTCEEEEESCEEEEECTTCCGGGSCBHHHHHHHH
T ss_pred c-----cCCCceEEec-Cc--eEEEEEEEEEE-cCcccccccccccCCCCceEEcCEEEEEeCCCChHHCCCHHHHHHHH
Confidence 1 2468999998 75 89999975433 577888 68999999999999999999999999999999
Q ss_pred HccC
Q 001083 602 HSSN 605 (1160)
Q Consensus 602 ~~~~ 605 (1160)
+.+.
T Consensus 605 ~~q~ 608 (621)
T 2hiv_A 605 NKQP 608 (621)
T ss_dssp HHSC
T ss_pred HHhh
Confidence 7554
No 3
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Probab=100.00 E-value=3.4e-93 Score=862.26 Aligned_cols=529 Identities=24% Similarity=0.422 Sum_probs=456.8
Q ss_pred CcHHHHHHHHHHHHhhCChHHHHHHHHHHHhhcCCCc-hHhhhHhhc----CCCCCcCcccCCCCHHHHHHHHHHHhCCC
Q 001083 7 TEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSV-DYFSALRLI----LPSLDRERGSYGLKESVLANCLIDALGMS 81 (1160)
Q Consensus 7 ~~F~~l~~l~e~i~~~~~~~~K~~~l~~~l~~~~~~~-d~~p~lrLl----lP~~d~er~~ygike~~L~k~~~~~~gl~ 81 (1160)
|+|+.||++|++|++++++++|+++|++||.++. ++ +++++++|+ +|..+ +++|||+++.|++++++++|++
T Consensus 4 m~~~~~a~~~~~i~~t~~r~~k~~~l~~~~~~~~-~~~~~~~~~~l~~g~~~p~~~--~~~~gi~~~~l~~~~~~~~g~~ 80 (558)
T 3gde_A 4 MLFAEFAEFCERLEKISSTLELTARIAAFLQKIE-DERDLYDVVLFITGKVYPPWD--ERELGVGIGLLYEALENVSGVK 80 (558)
T ss_dssp CBHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTCC-SHHHHHHHHHHHTTCSSCTTS--SCCCCCCHHHHHHHHHHHHCCC
T ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC-chhhHHHHHHHHcCCCCcccc--cceeCcChHHHHHHHHHHHCcC
Confidence 8999999999999999999999999999999984 55 899999988 56665 4699999999999999999999
Q ss_pred cChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhhc--CCCCCCCcHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHhC
Q 001083 82 KDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQ--GMISGGLTIKELNDLLDRLASSEN---RAEKISVLSTLIKKT 156 (1160)
Q Consensus 82 ~~s~~~~~L~~wk~~~~~~~~GD~~~~a~~vl~~r~--~~~~~~LTi~eVn~~Ld~LA~~~~---~~~k~~il~~ll~~~ 156 (1160)
.+.... .| ...||||.+|+.++.++. ...+++|||.+||+.|++||..++ +.+|..+|..||.+|
T Consensus 81 ~~~~~~----~~------~~~GDlg~~a~~~~~~~~~~~~~~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~l~~~~ 150 (558)
T 3gde_A 81 RSEIES----MI------REYGDLGLVAEQLIKKKKMTTLAFEELTVRKVRETFDEIASLTGEGSMKRKIMLLTGLYGLA 150 (558)
T ss_dssp HHHHHH----HH------HHHSCHHHHHHHHHHHHHHHSCCCCCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHH----HH------HhcCCHHHHHHHHHhhccCCCCCCCCCcHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHhC
Confidence 765433 34 357999999999987654 234578999999999999998876 477889999999999
Q ss_pred CHHHHHHHHHHHhhhhccCCcccccccc----cC--cc-HHHHHhhhCCHHHHHHHHhh-hhccccccccccCCcccccc
Q 001083 157 NAQEMKWIIMIILKDLKLGISEKSIFHE----FH--PD-AEDLFNVTCDLKLVCEKLKD-RNQRHKRQDIEVGKAVRPQL 228 (1160)
Q Consensus 157 t~~E~k~l~RiIlkdLriGi~e~til~~----~h--pd-a~~~~~~~~DL~~V~~~L~~-~~~~~~~~~i~~g~p~~PmL 228 (1160)
++.|++||+|||+++||||+++++|+.+ || |+ ++++|++++||+.||+.|.+ +..++....+++|.|++|||
T Consensus 151 ~~~E~~~l~rli~~~lRiG~~~~~vl~ala~a~~~~~~~~~~~~~~~~dl~~v~~~l~~~g~~~l~~~~~~~~~p~~PmL 230 (558)
T 3gde_A 151 TPLEARYLTRLILNEMRLGVGEGIMRDAIARAFRADPETVERAYMITNDLGRVAVVAKKEGEEGLRKMKIEIHIPVRMML 230 (558)
T ss_dssp CHHHHHHHHHHHTTCCCSSCCHHHHHHHHHHHTTCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTCCCCTTSCCCCCE
T ss_pred CHHHHHHHHHHHhccccccccHHHHHHHHHHHhCCCHHHHHHHhccCCchHHHHHHHhhcCcccccccCCCCCCCCCCee
Confidence 9999999999999999999999999976 55 44 56899999999999999874 44566678899999999999
Q ss_pred ccccCChHHHHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEeCCCCCCCcchhhHHHHHHHhcccCceeeceeEEEEeC
Q 001083 229 AMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDT 308 (1160)
Q Consensus 229 A~~~~~~~~~~~~~~~~~~~~E~K~DGeR~qih~~g~~v~~fSR~g~d~t~~~~~l~~~l~~~~~~~~~ILDGElv~~d~ 308 (1160)
|+++..+++.+.++ .+|++|+||||+|||+|++|++|++|||+|+++|..+|++.+.+...+.. +||||||||+|+
T Consensus 231 A~~~~~~~~~~~~~--~~~~~E~K~DG~R~qi~~~g~~v~l~SR~g~d~t~~fPel~~~~~~~l~~-~~iLDGElv~~~- 306 (558)
T 3gde_A 231 AQVAESLESAVREM--RTAAVEWKFDGSRVQVHWDGSRVTIYSRRLENVTNALPDIVEEIKKSVKP-GVILDGEVIAVK- 306 (558)
T ss_dssp EEECSCHHHHHHHS--SSEEEEEECSSEEEEEEECSSCCEEEETTCCBCGGGCHHHHHHHHHHBCS-SEEEEEEEEEEE-
T ss_pred CCcCCChHHHhhhc--cceEEEEeEeeEEEEEEEeCCEEEEEcCCCCcccccchHHHHHHHhhCCC-CeEEEeEEEEcC-
Confidence 99998888888887 47999999999999999999999999999999999999999887654543 499999999994
Q ss_pred CCCcccccccHHHHHHHhccCCC--CCCccEEEEEEeeeecCCcccccCCHHHHHHHHHHhhccCCCcceeeccCCCCCc
Q 001083 309 SLNRFAEFGSNQEIAKAARDGLS--SDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNS 386 (1160)
Q Consensus 309 ~~~~~~pF~~lq~i~~~~r~~~~--~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~~~~ 386 (1160)
.++++||+.++...++.. ... ....+++|++|||||+|| ++++.||.+|+++|++++.+ ++++.+.
T Consensus 307 -~g~~~~F~~L~~r~~~~~-~~~~~~~~~pv~~~vFDlL~l~G-~l~~~pl~eRr~~L~~~~~~-~~~i~~~-------- 374 (558)
T 3gde_A 307 -EGKPMPFQHVLRRFRRKH-DVAKMVEKIPLEAHFFDILYHDG-ECIDLPLRERRKLLESAVNE-SEKIKLA-------- 374 (558)
T ss_dssp -TTEEECHHHHHHHHHC---CTHHHHHHSCEEEEEEEEEEESS-BCTTSBHHHHHHHHHHHBCC-CSSEEEC--------
T ss_pred -CCcCCCHHHHHHHhcccc-chhhHhhcCCeEEEEEEEEeeCC-CccCCCHHHHHHHHHHhcCC-CCeEEEe--------
Confidence 367789987775433211 100 011249999999999999 99999999999999999975 4444332
Q ss_pred cccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEccccccCCCcccEEEEEEEeCCCC
Q 001083 387 HVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGR 466 (1160)
Q Consensus 387 ~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKlKpeY~~~g~~lDlvIIG~~~G~Gr 466 (1160)
....+.+.+++.++|++++++|+||||+|+++|+|.||+|+.+|+|+||++ +++|+||||+++|+|+
T Consensus 375 ---------~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~~----~t~D~vViG~~~g~Gk 441 (558)
T 3gde_A 375 ---------KQIVTDSVDEVRKMYDEAISAGHEGVMIKLPSSPYIPGKRGKNWLKVKAIM----ETLDLVVVGGEWGEGK 441 (558)
T ss_dssp ---------CEEEESCHHHHHHHHHHHHHTTCCEEEEECTTCBCCTTCEEEEEEEEESSC----CCEEEEEEEEEECCTT
T ss_pred ---------eeEecCCHHHHHHHHHHHHHcCCceeEEecCCCCCCCCCcCCceEEEeccc----ceEEEEEEEEEeCCCC
Confidence 134567899999999999999999999999999999999999999999974 6899999999999999
Q ss_pred CCCccceEEEEEecCCCCCCCCceEEEEeeecCCCCHHHHHHHHHhhcccccccCCCCCCCCCcccccCCCCCCCcEEEe
Q 001083 467 RGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIE 546 (1160)
Q Consensus 467 r~g~~gsfllg~~d~~~~~~~~~~~~s~~kVgtG~sdeel~~l~~~l~~~~~~~~~~~~~pP~~~~~~~~~~~~Pdvwi~ 546 (1160)
++|.+|+|+||++|+++ +.|+++|+||||||++++++|.+.|++++... ..|++||+
T Consensus 442 r~g~~g~lllg~~d~~~-----g~l~~vgkvgsGftd~~~~~l~~~l~~~~~~~------------------~~~~vwv~ 498 (558)
T 3gde_A 442 RSHWLSSFELACLDPVT-----GKLLKVGRVATGFTEEDLEELTEMFRPLIVSQ------------------QGKKVEFI 498 (558)
T ss_dssp GGGSEEEEEEEEECTTT-----CCEEEEEEECSSCCHHHHHHHHHHHGGGEEEE------------------ETTEEEEC
T ss_pred ccCccceEEEEEeeCCC-----CEEEEEeeeCCCCCHHHHHHHHHHHHhhcccC------------------CCCcEEec
Confidence 99999999999998543 37999999999999999999999999887541 24689998
Q ss_pred CCcceEEEEEEeeeeeeecccccCCceeeCceeeeeecCCCccCcCCHHHHHHHHHcc
Q 001083 547 SPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSS 604 (1160)
Q Consensus 547 ~P~~s~Vlev~~~i~~~~s~~~~~g~tLRFPR~~riR~DK~~~d~~t~~el~el~~~~ 604 (1160)
|. +|+||+++.. ..|+.|++|++||||||+|+|+||+|+||+|++++.+||+.+
T Consensus 499 -P~--lV~EV~~~~~-t~s~~~~~g~~LRfPrf~r~R~DK~~~ea~t~~~l~~l~~~q 552 (558)
T 3gde_A 499 -PK--YVFEVAYQEI-QKSPKYESGYALRFPRFVRLRDDKDVDEADTIERVENLYKLQ 552 (558)
T ss_dssp -SC--CEEEEECSEE-EECSSSTTSEEEESCEEEEECTTCCGGGSCBHHHHHHHHHTT
T ss_pred -Cc--EEEEEEEeee-ecCCccCCCCEEECcEEEEEECCCChHHCCCHHHHHHHHHHh
Confidence 75 8999996543 368899999999999999999999999999999999999754
No 4
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=100.00 E-value=3e-92 Score=858.04 Aligned_cols=533 Identities=25% Similarity=0.452 Sum_probs=463.4
Q ss_pred CcHHHHHHHHHHHHhhCChHHHHHHHHHHHhhcCCCchHhhhHhhc----CCCCCcCcccCCCCHHHHHHHHHHHhCCCc
Q 001083 7 TEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLI----LPSLDRERGSYGLKESVLANCLIDALGMSK 82 (1160)
Q Consensus 7 ~~F~~l~~l~e~i~~~~~~~~K~~~l~~~l~~~~~~~d~~p~lrLl----lP~~d~er~~ygike~~L~k~~~~~~gl~~ 82 (1160)
|+|+.||++|++|++++++++|+++|.+||.++ .+++++|+++|+ +|..+ +++|||+++.|++++++++|+++
T Consensus 1 ~~f~~~a~~~~~l~~t~~r~~k~~~l~~~~~~~-~~~d~~~~~~ll~~~l~P~~~--~~~~gi~~~~L~~~~~~~~g~~~ 77 (561)
T 2cfm_A 1 MRYLELAQLYQKLEKTTMKLIKTRLVADFLKKV-PDDHLEFIPYLILGEVFPEWD--ERELGVGEKLLIKAVAMATGIDA 77 (561)
T ss_dssp CBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHS-CGGGTTTHHHHHTTCSSCTTC--CCCCCCCHHHHHHHHHHHHSCCH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-CchHHHHHHHHHhCCCCcccc--ccccCCCHHHHHHHHHHHHCcCH
Confidence 799999999999999999999999999999997 478899999997 66665 46899999999999999999997
Q ss_pred ChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhhcC--CCCCCCcHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHhCC
Q 001083 83 DSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQG--MISGGLTIKELNDLLDRLASSEN---RAEKISVLSTLIKKTN 157 (1160)
Q Consensus 83 ~s~~~~~L~~wk~~~~~~~~GD~~~~a~~vl~~r~~--~~~~~LTi~eVn~~Ld~LA~~~~---~~~k~~il~~ll~~~t 157 (1160)
+.... .| ..+||||.+|+.++++++. ...++|||.+||+.|++||..++ +.+|..+|..||.+|+
T Consensus 78 ~~~~~----~~------~~~GDlg~~~~~~~~~~~~~~~~~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~ll~~~~ 147 (561)
T 2cfm_A 78 KEIEE----SV------KDTGDLGESIALAVKKKKQKSFFSQPLTIKRVYQTLVKVAETTGEGSQDKKVKYLADLFMDAE 147 (561)
T ss_dssp HHHHH----HH------HHHSCHHHHHHHHHHHHTTTCCCCCCCBHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHH----HH------HhcCCHHHHHHHHhccCcCcCcCCCCCcHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC
Confidence 65432 23 3579999999999988753 23478999999999999999876 4678899999999999
Q ss_pred HHHHHHHHHHHhhhhccCCcccccccc----c---CccHHHHHhhhCCHHHHHHHHhhhh-ccccccccccCCccccccc
Q 001083 158 AQEMKWIIMIILKDLKLGISEKSIFHE----F---HPDAEDLFNVTCDLKLVCEKLKDRN-QRHKRQDIEVGKAVRPQLA 229 (1160)
Q Consensus 158 ~~E~k~l~RiIlkdLriGi~e~til~~----~---hpda~~~~~~~~DL~~V~~~L~~~~-~~~~~~~i~~g~p~~PmLA 229 (1160)
+.|++||+|||+++||||+++++|+.+ | |++++++|++++||+.||+.|+++. .++....+.+|.|++||||
T Consensus 148 ~~e~~~l~rli~~~lriG~~~~~vl~ala~a~~~~~~~v~~~~~~~~~l~~v~~~l~~~g~~~l~~~~~~~~~P~~PmLA 227 (561)
T 2cfm_A 148 PLEAKYLARTILGTMRTGVAEGLLRDAIAMAFHVKVELVERAYMLTSDFGYVAKIAKLEGNEGLAKVQVQLGKPIKPMLA 227 (561)
T ss_dssp HHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCTTSCCCCCEE
T ss_pred HHHHHHHHHHHhccccccccHHHHHHHHHHHhcCCHHHHHHHHccCCCHHHHHHHHHhcccccccccCCCCCCCCCCeeC
Confidence 999999999999999999999999985 3 3678899999999999999988643 3455778999999999999
Q ss_pred cccCChHHHHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEeCCCCCCCcchhhHHHHHHHhcccCceeeceeEEEEeCC
Q 001083 230 MRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTS 309 (1160)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~E~K~DGeR~qih~~g~~v~~fSR~g~d~t~~~~~l~~~l~~~~~~~~~ILDGElv~~d~~ 309 (1160)
+++..++++++++++ +|++|+||||+|||+|+.++.+++|||+|+++|..+|++.+.+...+...++|||||||+|| .
T Consensus 228 ~~~~~~~~~~~~~~~-~~~~E~K~DG~R~~i~~~~g~v~l~SR~g~~~t~~fPel~~~~~~~l~~~~~iLDGElv~~d-~ 305 (561)
T 2cfm_A 228 QQAASIRDALLEMGG-EAEFEIKYDGARVQVHKDGSKIIVYSRRLENVTRAIPEIVEALKEAIIPEKAIVEGELVAIG-E 305 (561)
T ss_dssp EEESCHHHHHHHTTS-CEEEEEECCSEEEEEEEETTEEEEECTTCCBCGGGCHHHHHHHHHHBCSSEEEEEEEEEEBC-T
T ss_pred CcCCChhHHHhhcCC-cEEEEEeEceEEEEEEEECCEEEEEeCCCCCchhhhhhHHHHHHHhCCCcceEeeeEEEEEc-C
Confidence 999888888888753 79999999999999999999999999999999999999988776556568999999999999 5
Q ss_pred CCcccccccHHHHHHHhccCCC--CCCccEEEEEEeeeecCCcccccCCHHHHHHHHHHhhccCCCcceeeccCCCCCcc
Q 001083 310 LNRFAEFGSNQEIAKAARDGLS--SDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSH 387 (1160)
Q Consensus 310 ~~~~~pF~~lq~i~~~~r~~~~--~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~~~~~ 387 (1160)
+++++||+.++....+. .... ....+++|++|||||+||+++++.||.+|+++|++++.+. +++.+.
T Consensus 306 ~g~~~~F~~L~~r~~~~-~~~~~~~~~~~~~~~vFDlL~l~g~~l~~~pl~eRr~~L~~~~~~~-~~i~~~--------- 374 (561)
T 2cfm_A 306 NGRPLPFQYVLRRFRRK-HNIEEMMEKIPLELNLFDVLYVDGQSLIDTKFIDRRRTLEEIIKQN-EKIKVA--------- 374 (561)
T ss_dssp TSSBCCTHHHHHHHHCC-SCHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC-SSEEEC---------
T ss_pred CCcccCHHHHHHHhhcc-cchhhhcccCceEEEEEEEEeECCcCcccCCHHHHHHHHHHHhCcC-CcEEEe---------
Confidence 67788998877654321 1100 0113499999999999999999999999999999999764 444321
Q ss_pred ccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEccccccCCCcccEEEEEEEeCCCCC
Q 001083 388 VRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRR 467 (1160)
Q Consensus 388 v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKlKpeY~~~g~~lDlvIIG~~~G~Grr 467 (1160)
....+.+.+++.++|++++++|+||||+|+++|+|.||+|+..|+|+|++| +++|++|||+++|+|++
T Consensus 375 --------~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~~----dt~D~vViG~~~g~Gkr 442 (561)
T 2cfm_A 375 --------ENLITKKVEEAEAFYKRALEMGHEGLMAKRLDAVYEPGNRGKKWLKIKPTM----ENLDLVIIGAEWGEGRR 442 (561)
T ss_dssp --------CEEEESCHHHHHHHHHHHHHTTCCEEEEECTTCCCCTTCEEEEEEEECSSC----CCEEEEEEEEEECSGGG
T ss_pred --------eeEEcCCHHHHHHHHHHHHHcCCceeEEeCCCCCCCCCCcCCCeEEEcccC----cceeEEEEEEEeCCCCC
Confidence 134567899999999999999999999999999999999999999999998 68999999999999999
Q ss_pred CCccceEEEEEecCCCCCCCCceEEEEeeecCCCCHHHHHHHHHhhcccccccCCCCCCCCCcccccCCCCCCCcEEEeC
Q 001083 468 GGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIES 547 (1160)
Q Consensus 468 ~g~~gsfllg~~d~~~~~~~~~~~~s~~kVgtG~sdeel~~l~~~l~~~~~~~~~~~~~pP~~~~~~~~~~~~Pdvwi~~ 547 (1160)
+|.+|+|+|||+++++ +.|+++|+||||||++++++|.+.+++++.. ...|++||+
T Consensus 443 ~g~~g~lllg~~d~~~-----~~~~~vgkvgsGftd~~~~~l~~~l~~~~~~------------------~~~~~~wv~- 498 (561)
T 2cfm_A 443 AHLFGSFILGAYDPET-----GEFLEVGKVGSGFTDDDLVEFTKMLKPLIIK------------------EEGKRVWLQ- 498 (561)
T ss_dssp TTSEEEEEEEEECTTT-----CCEEEEEEECSSCCHHHHHHHHHHHGGGEEE------------------EETTEEEEC-
T ss_pred CCccceEEEEEEeCCC-----CeEEEEeEeCCCCCHHHHHHHHHHHhhhccc------------------cCCCeEEeC-
Confidence 9999999999998653 3799999999999999999999999987653 135799998
Q ss_pred CcceEEEEEEeeeeeeecccccCCceeeCceeeeeecCCCccCcCCHHHHHHHHHcc
Q 001083 548 PEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSS 604 (1160)
Q Consensus 548 P~~s~Vlev~~~i~~~~s~~~~~g~tLRFPR~~riR~DK~~~d~~t~~el~el~~~~ 604 (1160)
|. +|+||+++.. ..|+.|+.|++||||||.|||+||+|+||+|++++.+|++.+
T Consensus 499 P~--~V~EV~~~~~-t~s~~~~~G~~lRfPrf~r~R~DK~~~ea~t~~~l~~l~~~q 552 (561)
T 2cfm_A 499 PK--VVIEVTYQEI-QKSPKYRSGFALRFPRFVALRDDKGPEDADTIERIAQLYELQ 552 (561)
T ss_dssp SC--CEEEEECSEE-ECCSSSTTSCEEESCEEEEECTTSCGGGSCBHHHHHHHHHHH
T ss_pred Cc--eEEEEEEEEE-EcCCccCCCCEEEccEEEEEeCCCChHHCCCHHHHHHHHHHh
Confidence 75 8999997543 367889999999999999999999999999999999999744
No 5
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=100.00 E-value=1.1e-92 Score=875.04 Aligned_cols=555 Identities=25% Similarity=0.429 Sum_probs=466.7
Q ss_pred CCCCcHHHHHHHHHHHHhhCChHHHHHHHHHHHhhc--CCCchHhhhHhhcCCCC--CcCcccCCCCHHHHHHHHHHHhC
Q 001083 4 TEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTY--CDSVDYFSALRLILPSL--DRERGSYGLKESVLANCLIDALG 79 (1160)
Q Consensus 4 ~~~~~F~~l~~l~e~i~~~~~~~~K~~~l~~~l~~~--~~~~d~~p~lrLllP~~--d~er~~ygike~~L~k~~~~~~g 79 (1160)
..+|+|+.||++|++|++|+++++|+++|.+||..+ ..++|+.++++|+++.+ ++++.+|||+++.|++++++++|
T Consensus 53 ~~~~~~~~la~~~~~i~~t~~r~~k~~~l~~~~~~~~~~~~~dl~~~v~ll~g~l~P~~~~~elgi~~~~L~k~i~~~~g 132 (688)
T 1x9n_A 53 GQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATG 132 (688)
T ss_dssp TSCCBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTCSSCGGGCCCCCCCHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcCChHHHHHHHHHHcCCCCccccccccCcChHHHHHHHHHHHC
Confidence 357999999999999999999999999999999985 35789999999997664 45567999999999999999999
Q ss_pred CCcChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhhcCC-CCCCCcHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHh
Q 001083 80 MSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGM-ISGGLTIKELNDLLDRLASSEN---RAEKISVLSTLIKK 155 (1160)
Q Consensus 80 l~~~s~~~~~L~~wk~~~~~~~~GD~~~~a~~vl~~r~~~-~~~~LTi~eVn~~Ld~LA~~~~---~~~k~~il~~ll~~ 155 (1160)
++.+.... .| ..+||||.+|+++++++... .+.+|||.+|++.|++||..+| +..|..+|..||.+
T Consensus 133 ~~~~~~~~----~~------~~~GDlg~va~~~~~~~~~~~~~~~lTv~~V~~~L~~ia~~~g~~s~~~k~~~l~~ll~~ 202 (688)
T 1x9n_A 133 RQLESVRA----EA------AEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVA 202 (688)
T ss_dssp CCHHHHHH----HH------HHHTCHHHHTCC--------CCCSCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHH
T ss_pred cCHHHHHH----HH------HhcCCHHHHHHHHHhcccccCCCCCCcHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHh
Confidence 99865443 23 35799999999887654332 4578999999999999999876 45688999999999
Q ss_pred CCHHHHHHHHHHHhhhhccCCccccccccc------Ccc------------------------------HHHHHhhhCCH
Q 001083 156 TNAQEMKWIIMIILKDLKLGISEKSIFHEF------HPD------------------------------AEDLFNVTCDL 199 (1160)
Q Consensus 156 ~t~~E~k~l~RiIlkdLriGi~e~til~~~------hpd------------------------------a~~~~~~~~DL 199 (1160)
|++.|++||+|+|+++||||+++++|+.++ ||. +.++|+.++|+
T Consensus 203 ~~~~E~k~l~Rli~~~lRiG~~~~~vl~ala~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~ 282 (688)
T 1x9n_A 203 CRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDL 282 (688)
T ss_dssp CCSTHHHHHHHHHTTCCCCSCCHHHHHHHHHHHHHHSCTTCCSSCSCSCTTTTSCHHHHHHHHHHHHHHHHHHHHHSCCH
T ss_pred CCHHHHHHHHHHHhcccccCccHHHHHHHHHHHhccCccccccchhhhhhhcccchhhHHHHHHHHHHHHHHHHhhCCCH
Confidence 999999999999999999999999999754 441 13579999999
Q ss_pred HHHHHHHhhh-hccc-cccccccCCccccccccccCChHHHHHhcCCCcEEEEEecceEEEEEEEe-CCEEEEEeCCCCC
Q 001083 200 KLVCEKLKDR-NQRH-KRQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKN-GSEIHYFSRSFLD 276 (1160)
Q Consensus 200 ~~V~~~L~~~-~~~~-~~~~i~~g~p~~PmLA~~~~~~~~~~~~~~~~~~~~E~K~DGeR~qih~~-g~~v~~fSR~g~d 276 (1160)
+.||..|.+. ...+ ....+++|.||+||||+++..+.++++++.+..|++|+||||+|||+|++ +|.+++|||+|++
T Consensus 283 ~~l~~~l~~~g~~~l~~~~~~~~g~pv~PMLA~~~~~~~~~l~~~~~~~~~~E~K~DG~R~qih~~~~g~v~l~SR~g~d 362 (688)
T 1x9n_A 283 DRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQED 362 (688)
T ss_dssp HHHHHHHHHHHHHHTGGGCCCCTTSCCCCCEEEEESSHHHHHHHTTTSCEEEEEEESSEEEEEEECTTSCEEEECTTSCB
T ss_pred HHHHHHHHhcchhhcccccCcCCCCCccCccCCccCCHHHHHhhcCCCeEEEEEccccEeEEEEEcCCCeEEEEeCCCCc
Confidence 9999987643 2233 35679999999999999999888889999888899999999999999995 5689999999999
Q ss_pred CCcchhhHHHHHHHhc--ccCceeeceeEEEEeCCCCcccccccHHHHHHHhccCCCC--CCccEEEEEEeeeecCCccc
Q 001083 277 HSEYGHAMSKIIEQNV--LVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSS--DRQVLCYFAFDVLYVGDTSV 352 (1160)
Q Consensus 277 ~t~~~~~l~~~l~~~~--~~~~~ILDGElv~~d~~~~~~~pF~~lq~i~~~~r~~~~~--~~~~~~~~vFDiL~lng~sl 352 (1160)
+|..+|++.+.+...+ ...++|||||||+||+.+++++||+.++. +.+..... ...+++|++|||||+||+++
T Consensus 363 ~t~~fPel~~~l~~~~~~~~~~~ILDGElV~~d~~~g~~~~F~~L~~---r~r~~~~~~~~~~~v~~~vFDlL~l~G~~l 439 (688)
T 1x9n_A 363 NTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTT---RKRKEVDASEIQVQVCLYAFDLIYLNGESL 439 (688)
T ss_dssp CTTTCHHHHHTSGGGBCTTCCCEEEEEEEEEECTTTCSBCCHHHHTT---SCSSCCCGGGCCSEEEEEEEEEEEETTEEC
T ss_pred ccccchHHHHHHHHhhccCCCCeEEeEEEEEEeCCCCCcCCHHHHHH---HhhcccchhhcccceEEEEEechhhcCCcc
Confidence 9999999887654332 25699999999999987788999976653 33322211 12359999999999999999
Q ss_pred ccCCHHHHHHHHHHhhccCCCcceeeccCCCCCccccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecC--CCCC
Q 001083 353 IHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDL--GSKW 430 (1160)
Q Consensus 353 ~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~--ds~Y 430 (1160)
++.||.+||++|++++.+.++++.+. ....+.+.+++.++|++++++|+||||+|++ +|+|
T Consensus 440 ~~~Pl~eRr~~L~~~~~~~~~~i~~~-----------------~~~~~~~~~~~~~~~~~a~~~g~EGlV~K~~~~ds~Y 502 (688)
T 1x9n_A 440 VREPLSRRRQLLRENFVETEGEFVFA-----------------TSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATY 502 (688)
T ss_dssp TTSCHHHHHHHHHHHBCCBTTTEEEC-----------------CEECCCCHHHHHHHHHHHHHTSEEEEEEEESSSSCSS
T ss_pred ccCCHHHHHHHHHHhhccCCCcEEEE-----------------eeEecCCHHHHHHHHHHHHhcCCceeEEeecccCCCC
Confidence 99999999999999998776665432 1344678999999999999999999999999 9999
Q ss_pred cCCCCCCCeEEEccccccC-CCcccEEEEEEEeCCCCCCCccceEEEEEecCCCCCCCCceEEEEeeecCCCCHHHHHHH
Q 001083 431 EPGDRSGKWLKLKPEYIRA-GSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAV 509 (1160)
Q Consensus 431 ~pGkRs~~WlKlKpeY~~~-g~~lDlvIIG~~~G~Grr~g~~gsfllg~~d~~~~~~~~~~~~s~~kVgtG~sdeel~~l 509 (1160)
.||+|+.+|+|+|++|+++ ++++|++|||||+|+|+|+|.+|+|+|||+++++ +.|+++|+||||||++++++|
T Consensus 503 ~~GkRs~~WlK~K~~y~~~~~dt~D~vVIG~~~g~Gkr~g~~gslllg~~d~~~-----~~l~~vgkvgtGftd~~~~~l 577 (688)
T 1x9n_A 503 EIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDS-----EELQAICKLGTGFSDEELEEH 577 (688)
T ss_dssp CTTTCSEEEEEEEHHHHHSSCEEEEEEEEEEEEBCTTSBTSEEEEEEEEEETTT-----TEEEEEEEECCSCCHHHHHHH
T ss_pred CCCCcCchHheeehhhhccccccccEEEEEEEeCCCCCCCceeeEEEEEEeCCC-----CeEEEEeeeCCCCCHHHHHHH
Confidence 9999999999999999884 7899999999999999999999999999998753 389999999999999999999
Q ss_pred HHhhcccccccCCCCCCCCCcccccCCCCCCCcEEEeCCcceEEEEEEeeeeeeecccccC---------CceeeCceee
Q 001083 510 VTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSA---------PYSLRFPRID 580 (1160)
Q Consensus 510 ~~~l~~~~~~~~~~~~~pP~~~~~~~~~~~~Pdvwi~~P~~s~Vlev~~~i~~~~s~~~~~---------g~tLRFPR~~ 580 (1160)
.+.|++++.. .||.++.+. ....|++||+ |. +|+||++... ..|+.|++ |++||||||+
T Consensus 578 ~~~l~~~~~~------~~~~~~~~~--~~~~p~vwv~-P~--~V~EV~~~e~-t~S~~~~~~~g~~~~~~G~sLRfPrf~ 645 (688)
T 1x9n_A 578 HQSLKALVLP------SPRPYVRID--GAVIPDHWLD-PS--AVWEVKCADL-SLSPIYPAARGLVDSDKGISLRFPRFI 645 (688)
T ss_dssp HHHHHHTEES------SCCTTEECS--SSCCCSEEEC-SC--CEEEEEESEE-EEESSCCTTTTTSCSSCEEEEESCEEE
T ss_pred HHHhhccccC------CCCCccccC--CCCCCcEEeC-Cc--EEEEEEEEee-eccccccccccccccCCCceEECcEEE
Confidence 9999998764 133444442 2568999998 65 7999986433 35778876 8999999999
Q ss_pred eeecCCCccCcCCHHHHHHHHHccC
Q 001083 581 RVRYDKPWHDCLDVQSFVELVHSSN 605 (1160)
Q Consensus 581 riR~DK~~~d~~t~~el~el~~~~~ 605 (1160)
|||+||+|+||+|+++|.+|++++.
T Consensus 646 riR~DK~~~ea~t~~~l~~l~~~q~ 670 (688)
T 1x9n_A 646 RVREDKQPEQATTSAQVACLYRKQS 670 (688)
T ss_dssp EECTTCCGGGSCBHHHHHHHHHHHC
T ss_pred EEeCCCChHHCCCHHHHHHHHHHhH
Confidence 9999999999999999999998654
No 6
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1e-58 Score=525.97 Aligned_cols=307 Identities=23% Similarity=0.338 Sum_probs=245.1
Q ss_pred cccCCccccccccccCChHHHHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEeCCCCCCCcchhhHHHHHHHhcccCce
Q 001083 218 IEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRC 297 (1160)
Q Consensus 218 i~~g~p~~PmLA~~~~~~~~~~~~~~~~~~~~E~K~DGeR~qih~~g~~v~~fSR~g~d~t~~~~~l~~~l~~~~~~~~~ 297 (1160)
.++|.|++||||+++... .+.+.+|++|+||||+|||+|++++++++|||+|+++|..+|++...+ ..+...++
T Consensus 3 ~~~~~p~~PmLA~~~~~~-----~~~~~~~~~E~K~DG~R~~~~~~~g~v~l~SR~g~~~t~~fPel~~~~-~~l~~~~~ 76 (310)
T 1vs0_A 3 VFEFDNLAPMLATHGTVA-----GLKASQWAFEGXWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALA-EDLADHHV 76 (310)
T ss_dssp -CCGGGCCCCEEEECCCT-----TCCTTTEEEEEECCSEEEEEEEETTEEEEEETTCCBCGGGCGGGHHHH-HHTTTCEE
T ss_pred CCCCCCccCeECCCcCCC-----ccCCCCEEEEEccCcEEEEEEEECCEEEEEcCCCCCchhhchhHHHHH-HhCCCccE
Confidence 468999999999998522 124568999999999999999999999999999999999899988754 44545689
Q ss_pred eeceeEEEEeCCCCcccccccHHHHHHHhccCCCCCCccEEEEEEeeeecCCcccccCCHHHHHHHHHHhhccCCCccee
Q 001083 298 ILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLET 377 (1160)
Q Consensus 298 ILDGElv~~d~~~~~~~pF~~lq~i~~~~r~~~~~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i 377 (1160)
|||||||+||.. ++ .+|+.+|. +.+. . .++|+|||||++||++++++||.+|+++|++++.+. ++.+
T Consensus 77 iLDGElv~~d~~-g~-~~F~~l~~---r~~~-----~-~~~~~vFDll~~~g~~l~~~pl~eRr~~L~~~~~~~--~i~~ 143 (310)
T 1vs0_A 77 VLDGEAVVLDSS-GV-PSFSQMQN---RGRD-----T-RVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANAT--SLTV 143 (310)
T ss_dssp EEEEEEECBCTT-SC-BCHHHHHT---CCTT-----S-CCEEEEEEEEEETTEECTTSCHHHHHHHHHHHHHHS--CCCC
T ss_pred EEeeEEEEECCC-CC-cCHHHHHh---hccC-----C-cEEEEEEEeEEECCcCcccCCHHHHHHHHHHhccCC--cEEE
Confidence 999999999874 44 48866553 2221 1 389999999999999999999999999999998653 3221
Q ss_pred eccCCCCCccccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEccccccCCCcccEEE
Q 001083 378 LVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLI 457 (1160)
Q Consensus 378 ~~p~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKlKpeY~~~g~~lDlvI 457 (1160)
. + ... .++.++|++++++|+||||+|+++|+|.+|+|+.+|+|+|++| ++|++|
T Consensus 144 ~-----------~------~~~----~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~~-----~~D~vv 197 (310)
T 1vs0_A 144 P-----------E------LLP----GDGAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWN-----TQEVVI 197 (310)
T ss_dssp C-----------C------CCC----SSHHHHHHHHHHTTCCEEEEEETTCCCCTTCEEEEEEEEESSE-----EEEEEE
T ss_pred C-----------c------cCc----hHHHHHHHHHHHcCCceEEEeCCCCCcCCCCcChHHhccchhe-----EEEEEE
Confidence 1 0 111 2488999999999999999999999999999999999999997 899999
Q ss_pred EEEEeCCCCCCCccceEEEEEecCCCCCCCCceEEEEeeecCCCCHHHHHHHHHhhcccccccCCCCCCCCCcccccCCC
Q 001083 458 IGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNS 537 (1160)
Q Consensus 458 IG~~~G~Grr~g~~gsfllg~~d~~~~~~~~~~~~s~~kVgtG~sdeel~~l~~~l~~~~~~~~~~~~~pP~~~~~~~~~ 537 (1160)
+|+++|+|+++|.+|+|+||+++++ .|+++|+||||||++++++|.+.|++++.. +|+|.......
T Consensus 198 ~G~~~g~G~r~g~~g~lllg~~d~~-------g~~~vgkvgtGftd~~~~~l~~~l~~~~~~-------~~p~~~~~~~~ 263 (310)
T 1vs0_A 198 GGWRAGEGGRSSGVGSLLMGIPGPG-------GLQFAGRVGTGLSERELANLKEMLAPLHTD-------ESPFDVPLPAR 263 (310)
T ss_dssp EEEEC--------CCEEEEEEEETT-------EEEEEEEECSSCCHHHHHHHHHHHGGGBCS-------SCSBSSCCCHH
T ss_pred EEEEcCCCCccCccceEEEEEEcCC-------CCEEEEEECCCCCHHHHHHHHHHHHhhccC-------CCCccccCCcc
Confidence 9999999999999999999999753 388999999999999999999999998753 22232111112
Q ss_pred CCCCcEEEeCCcceEEEEEEeeeeeeecccccCCceeeCceeeeeecCCCccCcCC
Q 001083 538 KERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLD 593 (1160)
Q Consensus 538 ~~~Pdvwi~~P~~s~Vlev~~~i~~~~s~~~~~g~tLRFPR~~riR~DK~~~d~~t 593 (1160)
..+|++||+ |. +|+||+++. ++.+++||||||+++|+||+|+||+.
T Consensus 264 ~~~~~~wv~-P~--~V~ev~~~~-------~t~~g~lRfP~f~r~R~DK~~~~~~~ 309 (310)
T 1vs0_A 264 DAKGITYVK-PA--LVAEVRYSE-------WTPEGRLRQSSWRGLRPDKKPSEVVR 309 (310)
T ss_dssp HHTTEEEBC-TT--CEEEEEESC-------BCTTSCBTTCEEEEECTTSCGGGCCC
T ss_pred cCCCCEEEc-CC--EEEEEEEEE-------EcCCCeEEceEEEEEeCCCCHHHhCC
Confidence 457899998 76 799998642 44678999999999999999999973
No 7
>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1
Probab=100.00 E-value=1.9e-49 Score=457.86 Aligned_cols=305 Identities=20% Similarity=0.241 Sum_probs=237.6
Q ss_pred cccccCCccccccccccCChHHHHHhcCCCcEEEEEecceEEEEEEEe-CCEEEEEeCCCCCCCc------chhhHHHHH
Q 001083 216 QDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKN-GSEIHYFSRSFLDHSE------YGHAMSKII 288 (1160)
Q Consensus 216 ~~i~~g~p~~PmLA~~~~~~~~~~~~~~~~~~~~E~K~DGeR~qih~~-g~~v~~fSR~g~d~t~------~~~~l~~~l 288 (1160)
..+++|.|++|||+. +.+++... ..|++|+||||+|||+|++ ++++++|||+|++++. ++|.+.+.+
T Consensus 3 ~~~~~~~pv~pmL~~----~~~~l~~~--~~~~~E~K~DG~R~~~~~~~~g~v~l~SR~g~~~~~l~~~~~~~p~~~~~l 76 (348)
T 1a0i_A 3 IKTNPFKAVSFVESA----IKKALDNA--GYLIAEIKYDGVRGNICVDNTANSYWLSRVSKTIPALEHLNGFDVRWKRLL 76 (348)
T ss_dssp TCCCCEEEEECCHHH----HHHHHHHH--SSEEEEECCCSEEEEEEEETTSEEEEECTTSCBCGGGGGGCEECHHHHHHH
T ss_pred eeccCCCcCchhhhc----HHHHHhhc--CcEEEEEeeceeEEEEEEeCCCeEEEEcCCCCCCcchhhhhcccchHHHHH
Confidence 568899999999942 34455544 4799999999999999998 6899999999999876 678888877
Q ss_pred HHh--cccCceeeceeEEEEeCCCCcccccccHHHHHHHh------------------ccC--C--CCCCccEEEEEEee
Q 001083 289 EQN--VLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAA------------------RDG--L--SSDRQVLCYFAFDV 344 (1160)
Q Consensus 289 ~~~--~~~~~~ILDGElv~~d~~~~~~~pF~~lq~i~~~~------------------r~~--~--~~~~~~~~~~vFDi 344 (1160)
... ..+.+||||||||+|+ .||+.+|...++. ... + .....+++|++|||
T Consensus 77 ~~~~~~~~~~~iLDGElv~~~------~~F~~l~~~~~~k~~~~k~v~~~~~~~r~~~~~~~~i~~~~~~~~~~~~vFDl 150 (348)
T 1a0i_A 77 NDDRCFYKDGFMLDGELMVKG------VDFNTGSGLLRTKWTDTKNQEFHEELFVEPIRKKDKVPFKLHTGHLHIKLYAI 150 (348)
T ss_dssp HSTTCCCTTEEEEEEEEEESS------SCTTTHHHHHHCCSCCSSBSSCC--------CCCSCCCCCBCTTTEEEEEEEE
T ss_pred hhhhccCCCCEEEEEEEEEeC------CCHHHHHHHhcccccccccccccccccccccccccccccccccCcEEEEEEee
Confidence 542 3456999999999974 4999888765521 000 0 01133599999999
Q ss_pred eecC----Cccc---ccCCHHHHHHHHHHhhccCCC-cceeeccCCCCCccccCCCCCccceecCCHHHHHHHHHHHHHc
Q 001083 345 LYVG----DTSV---IHQSLKERHELLQKVVKPSKG-RLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIEN 416 (1160)
Q Consensus 345 L~ln----g~sl---~~~pl~eRr~~L~~~v~~~~~-~~~i~~p~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~ 416 (1160)
||+| |++| +++||.+|+++|++++...+. ++.+. ....+++.+++.++|++++++
T Consensus 151 l~l~~~~~G~~l~~~~~~pl~eRr~~L~~l~~~~~~~~i~~~-----------------~~~~~~~~~~~~~~~~~~~~~ 213 (348)
T 1a0i_A 151 LPLHIVESGEDCDVMTLLMQEHVKNMLPLLQEYFPEIEWQAA-----------------ESYEVYDMVELQQLYEQKRAE 213 (348)
T ss_dssp EEHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCTTSEEEEC-----------------CEEEESSHHHHHHHHHHHHTT
T ss_pred EeeCCCCCCccchhhccCCHHHHHHHHHHHhhhCCCCeEEEe-----------------ccEecCCHHHHHHHHHHHHHc
Confidence 9999 9998 899999999999999875432 22221 134567899999999999999
Q ss_pred CCceEEEecCCCCCcCCCCCCCeEEEccccccCCCcccEEEEEEEeCCCCC--CCccceEEEEEecCCCCCCCCceEEEE
Q 001083 417 RDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRR--GGEVAQFLVALAERPAPDTYPRRFISF 494 (1160)
Q Consensus 417 g~EGlVlK~~ds~Y~pGkRs~~WlKlKpeY~~~g~~lDlvIIG~~~G~Grr--~g~~gsfllg~~d~~~~~~~~~~~~s~ 494 (1160)
|+||||+|+++|+|++|+|+. |+|+|++| ++|++|||+++|+|++ +|.+|+|+|+. + ++ .|.
T Consensus 214 g~EGlv~K~~ds~Y~~Grr~~-wlK~K~~~-----~~D~vViG~~~g~g~r~~~g~~~~~~~~~-~-~g------~~~-- 277 (348)
T 1a0i_A 214 GHEGLIVKDPMCIYKRGKKSG-WWKMKPEN-----EADGIIQGLVWGTKGLANEGKVIGFEVLL-E-SG------RLV-- 277 (348)
T ss_dssp TCCCEEEECTTCEECSEEEEE-EEEESCCE-----EEEEEEEEEECCCTTTSSCSSCCEEEEEC-T-TS------CEE--
T ss_pred CCceEEEeCCCCCCCCCCccC-cEEEeecc-----cEEEEEEEEEeCCCCccCCceEEEEEEEe-C-CC------CEE--
Confidence 999999999999999998875 99999998 9999999999999986 89999999852 2 22 454
Q ss_pred eeecCCCCHHHHHHHHHhhcccccccCCCCCCCCCcccccCCCCCCCcEEEeCCcceEEEEEEeeeeeeecccccCCcee
Q 001083 495 CRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSL 574 (1160)
Q Consensus 495 ~kVgtG~sdeel~~l~~~l~~~~~~~~~~~~~pP~~~~~~~~~~~~Pdvwi~~P~~s~Vlev~~~i~~~~s~~~~~g~tL 574 (1160)
+|||||++++++|.+.+++++... ..+| +. . ....+|++|++ |..+.|+||++.. ++.+++|
T Consensus 278 --~gtGftd~~~~~l~~~l~~~~~~~----~~~~-~~-~--~~~~~~~~wv~-P~~g~v~eV~~~~-------~t~~G~l 339 (348)
T 1a0i_A 278 --NATNISRALMDEFTETVKEATLSQ----WGFF-SP-Y--GIGDNDACTIN-PYDGWACQISYME-------ETPDGSL 339 (348)
T ss_dssp --EEBCCCSHHHHHHHHHHHHHHTTT----SCCC------------CCCCCC-TTTTCEEEEEESE-------ECTTSCE
T ss_pred --EccCCCHHHHHHHHHHHhhhcccc----CCCc-cc-c--cCCCCCcEEEc-CCCcEEEEEEeee-------ecCCCce
Confidence 379999999999999999887531 1123 21 1 12467899998 8888999998743 2223499
Q ss_pred eCceeeeee
Q 001083 575 RFPRIDRVR 583 (1160)
Q Consensus 575 RFPR~~riR 583 (1160)
|||||+++|
T Consensus 340 RfP~f~~~R 348 (348)
T 1a0i_A 340 RHPSFVMFR 348 (348)
T ss_dssp ESCEEEEEC
T ss_pred ECCeEeEeC
Confidence 999999998
No 8
>1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A*
Probab=100.00 E-value=1.7e-44 Score=406.84 Aligned_cols=265 Identities=17% Similarity=0.226 Sum_probs=200.0
Q ss_pred ccccccccccCChHHHHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEeCCCCCCCcchhhHHHHHHHhcccCceeecee
Q 001083 223 AVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGE 302 (1160)
Q Consensus 223 p~~PmLA~~~~~~~~~~~~~~~~~~~~E~K~DGeR~qih~~g~~v~~fSR~g~d~t~~~~~l~~~l~~~~~~~~~ILDGE 302 (1160)
+|+||||+++....+ .+.+|++|+||||+|||+ + + ++|||+|+++|. |.|.+.+...+ ++|||||
T Consensus 2 ~~~PmLA~~~~~~~~-----~~~~~~~E~K~DG~R~~~--~-g--~l~SR~g~~~t~--p~l~~~~~~~~---~~iLDGE 66 (297)
T 1fvi_A 2 ITKPLLAATLENIED-----VQFPCLATPKIAGIRSVK--Q-T--QMLSRTFKPIRN--SVMNRLLTELL---PEGSDGE 66 (297)
T ss_dssp CSSCCBCEECCCGGG-----CCSSEEEEECCCSEEEEE--S-S--SEECTTSCBCSC--HHHHHHHHHHS---CTTEEEE
T ss_pred CcCceeCCccCcCcC-----CCCcEEEEeeEeeeeEEe--c-C--EEECCCCcccCc--HHHHHHHHhcC---CeeEEEE
Confidence 689999999876521 146899999999999998 4 4 999999999996 87777665433 8999999
Q ss_pred EEEEeCCCCcccccccHHHHHHHhccCCCCCCccEEEEEEeeeecCCcccccCCHHHHHHHHHHhhccCCC-----ccee
Q 001083 303 MLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKG-----RLET 377 (1160)
Q Consensus 303 lv~~d~~~~~~~pF~~lq~i~~~~r~~~~~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~-----~~~i 377 (1160)
+|++. .+|+.+|...++.. .....+++|+||||||+| ++.||.+|+++|++++.+.+. ++.+
T Consensus 67 lv~~~------~~F~~l~~~~~~~~---~~~~~~~~~~vFDll~l~----~~~pl~eRr~~L~~~~~~~~~~~~~~~i~~ 133 (297)
T 1fvi_A 67 ISIEG------ATFQDTTSAVMTGH---KMYNAKFSYYWFDYVTDD----PLKKYIDRVEDMKNYITVHPHILEHAQVKI 133 (297)
T ss_dssp EECTT------SCHHHHHHHHHSCC-------CCEEEEEEEECSSC----TTSCHHHHHHHHHHHHHHCGGGGGCSSEEE
T ss_pred EEECC------CCHHHHHHHhccCC---CCCccceEEEEEeccCCC----CCCCHHHHHHHHHHHHhhcCCccccceEEE
Confidence 99932 36877665543211 112235999999999998 789999999999999875432 3322
Q ss_pred eccCCCCCccccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCC----CeEEEccccccCCCcc
Q 001083 378 LVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSG----KWLKLKPEYIRAGSDL 453 (1160)
Q Consensus 378 ~~p~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~----~WlKlKpeY~~~g~~l 453 (1160)
+. .....+.+.+++.++|++++++|+||||+|+++|+|++| |+. +|+|+|++| ++
T Consensus 134 ~~---------------~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G-Rs~~~~g~wlK~K~~~-----~~ 192 (297)
T 1fvi_A 134 IP---------------LIPVEINNITELLQYERDVLSKGFEGVMIRKPDGKYKFG-RSTLKEGILLKMKQFK-----DA 192 (297)
T ss_dssp EE---------------CCCEEECSHHHHHHHHHHHHHTTCCSEEEECTTCCCCSS-BCCTTTTSSEEECCCE-----EE
T ss_pred cC---------------cceEecCCHHHHHHHHHHHHHCCCcEEEEECCCCCcCCC-CCCCCCCCeEEECCCC-----CE
Confidence 10 003345789999999999999999999999999999999 888 999999986 89
Q ss_pred cEEEEEEEeC---------------------CCCC-CCccceEEEEEecCCCCCCCCceEEEEeeecCCCCHHHHHHHHH
Q 001083 454 DVLIIGGYYG---------------------SGRR-GGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVT 511 (1160)
Q Consensus 454 DlvIIG~~~G---------------------~Grr-~g~~gsfllg~~d~~~~~~~~~~~~s~~kVgtG~sdeel~~l~~ 511 (1160)
|++|||+++| .|++ .|.+|+|+|+.. + .+|+||||||++++++|.+
T Consensus 193 d~vVig~~~g~~~~~~~~~~~~g~~~r~~~~~G~~~~g~~g~ll~~~~---g---------~~~~vgtGftd~~~~~l~~ 260 (297)
T 1fvi_A 193 EATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDYD---G---------VVFSIGTGFDADQRRDFWQ 260 (297)
T ss_dssp EEEEEEEEESCC-------------------CCCTTCCCEEEEEECST---T---------CCEEECSSCCHHHHHHHHH
T ss_pred EEEEEEEEeCccccccccccccccccccccCCCcccCCcEEEEEEccC---C---------eEEEECCCCCHHHHHHHHh
Confidence 9999999999 9998 889999999852 2 2579999999999999875
Q ss_pred hhcccccccCCCCCCCCCcccccCCCCCCCcEEEeCCcceEEEEEEeeeeeeecccccCCceeeCceeeeeecCCCc
Q 001083 512 KLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPW 588 (1160)
Q Consensus 512 ~l~~~~~~~~~~~~~pP~~~~~~~~~~~~Pdvwi~~P~~s~Vlev~~~i~~~~s~~~~~g~tLRFPR~~riR~DK~~ 588 (1160)
.+. | + ...|+||++.. ++...+||||||+++|+||+|
T Consensus 261 ~~~-------------p-~-------------------~g~v~ev~~~~-------~t~~g~lRfP~f~r~R~Dk~~ 297 (297)
T 1fvi_A 261 NKE-------------S-Y-------------------IGKMVKFKYFE-------MGSKDCPRFPVFIGIRHEEDR 297 (297)
T ss_dssp THH-------------H-H-------------------TTCEEEEEEEC-------C-----CEEEEEEEEC-----
T ss_pred hcC-------------c-c-------------------cCcEEEEEEEE-------eCCCCCccCCeEEEEEcCCCC
Confidence 432 1 1 01267787532 222348999999999999986
No 9
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=100.00 E-value=1.9e-41 Score=376.10 Aligned_cols=248 Identities=25% Similarity=0.439 Sum_probs=202.4
Q ss_pred CCCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhcCC--CeeecchHHHHHhc
Q 001083 653 GETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG--DVIHYSWVLDCCSQ 730 (1160)
Q Consensus 653 ~~s~lF~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~~~~~Th~Ia~~~~~~K~~~a~~~~--~VV~p~WV~dCi~~ 730 (1160)
+.++||+|+.|||+++....++++|+++|.+|||++++|++. .||||++++.+.|++.+++++ +||+|+||+||+++
T Consensus 6 ~~s~lF~G~~f~V~sg~~~~~k~~L~~lI~~~GG~v~~n~~~-~t~~iIa~~~~~k~~~~~~~g~~~IV~p~Wv~Dci~~ 84 (263)
T 3ii6_X 6 KISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGP-DTYCVIAGSENIRVKNIILSNKHDVVKPAWLLECFKT 84 (263)
T ss_dssp CCCCTTTTCEEEECCCC--CCHHHHHHHHHHTTCEECSSCCT-TEEEEECSSCCHHHHHHHHSCSCCEECHHHHHHHHHH
T ss_pred cCcccCCCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCC-CEEEEEeCCCCHHHHHHHhcCCCCEeehHHHHHHHhc
Confidence 568999999999998888889999999999999999999985 577766788889999998864 99999999999999
Q ss_pred CccCCCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCc------chhhHHhhhcCCC-CCCcc
Q 001083 731 KKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDP------KTIDYYKKKYCPQ-DKWSC 803 (1160)
Q Consensus 731 ~~lLp~~p~~~l~~s~~t~~~~~~~~D~~gDSy~~~~~~~~L~~ll~~i~~~~~~------~~i~~l~~~~~~~-~~~~l 803 (1160)
+++||++|+|++++++++++.+++++|+|||||+.++|+++|+++|++|...... ..+++++.+++.+ .++.|
T Consensus 85 ~~llp~~p~~~~~~~~~~~~~~~~~~D~~GDsy~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 164 (263)
T 3ii6_X 85 KSFVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFIDTDLNQLKEVFSGIKNSNEQTPEEMASLIADLEYRYSWDCSPLSM 164 (263)
T ss_dssp TSCCCCCGGGEEECCHHHHHHTTTTBCTTSCBSSSCCCHHHHHHHHHSCCCCCSCCHHHHHHHHHHHHHHHTCTTCGGGT
T ss_pred CCcCCCCHHHHhhCCHHHHHHHHHhccccCCccCCcCCHHHHHHHHHhCcccccCCchhhHHHHHHHHHhhcccCCcchh
Confidence 9999999999999999999999999999999999999999999999999753321 2355677666653 58899
Q ss_pred CCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCCC-ceEEEEecCCCcccchhhhHHHHHHHhhhhcc
Q 001083 804 FHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN-ATHVVVLSVLGYDVNFNSLTESFTAREKHLLW 882 (1160)
Q Consensus 804 F~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~-vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~~~ 882 (1160)
|+||+|||+++... +.+...+.+..++++++.|+++||++++.+++ ||||||.+..++...++.+++ ..
T Consensus 165 F~~~~vy~~~~~~~-~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~vTHVVv~~~~~r~~~~~~~~~---------~~ 234 (263)
T 3ii6_X 165 FRRHTVYLDSYAVI-NDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRR---------TF 234 (263)
T ss_dssp TTTCEEEECCBSST-TCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCEEEECSCCTTHHHHHHHHH---------TC
T ss_pred hCCeEEEEeccccc-CCcccccchhHHHHHHHHHHccCCEEecCCCCCceEEEECCCCccHHHHHHHHh---------hc
Confidence 99999999987531 22222233335678899999999999999995 999999864321111222221 12
Q ss_pred CCccEEeccchHHHHHHcCCccCCCCCCC
Q 001083 883 NKKLHVVRSQWLEDCLAKEQKSEEYEYSL 911 (1160)
Q Consensus 883 ~~~~~IVt~~Wl~eci~~~~~v~Ee~Y~v 911 (1160)
...++||+++||++|+++|+++||++|.|
T Consensus 235 ~~~~~iV~~~Wv~dci~~~~~l~E~~Y~i 263 (263)
T 3ii6_X 235 KRKFKILKESWVTDSIDKCELQEENQYLI 263 (263)
T ss_dssp SSCCEEEETHHHHHHHHTTSCCCGGGTBC
T ss_pred CCCCEEeChHHHHHHHHcCCcCCHhhCCC
Confidence 46799999999999999999999999975
No 10
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=100.00 E-value=2.6e-41 Score=368.63 Aligned_cols=215 Identities=41% Similarity=0.647 Sum_probs=192.3
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhCChHHHHHHHHHHHhhcC------------CCchHhhhHhhcCCCCCcCcccCCCCHH
Q 001083 1 MTKTEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYC------------DSVDYFSALRLILPSLDRERGSYGLKES 68 (1160)
Q Consensus 1 ~~~~~~~~F~~l~~l~e~i~~~~~~~~K~~~l~~~l~~~~------------~~~d~~p~lrLllP~~d~er~~ygike~ 68 (1160)
|+++++|+|++||++|++|++++++.+|+.+|.+||..|+ .+.++||++||++|+.|++|++|||+|+
T Consensus 8 ~~~~~~~~F~~l~~~~e~Ie~ts~rl~k~~il~~f~~~~~~~~~~l~~~~~~~~~dly~~l~ll~P~~d~~r~~ygi~e~ 87 (240)
T 4htp_A 8 QTVASHVPFADLCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDALHKNHKDVTDSFYPAMRLILPQLERERMAYGIKET 87 (240)
T ss_dssp CCGGGTSBHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTTTCSSCCCCSHHHHHHHSGGGCCSSCCCCCCHH
T ss_pred cccccCCcHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccccccCcccCcchHHHHHHHhCccccccccccCCCHH
Confidence 6899999999999999999999999999999999999983 2578999999999999998889999999
Q ss_pred HHHHHHHHHhCCCcChHHHHHHhhhhcCCC-CCCCCCHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHHHHhhhh---HHH
Q 001083 69 VLANCLIDALGMSKDSADAVRLINWRKGGA-APNAGNFPMVAAEVLQRRQGMISGGLTIKELNDLLDRLASSEN---RAE 144 (1160)
Q Consensus 69 ~L~k~~~~~~gl~~~s~~~~~L~~wk~~~~-~~~~GD~~~~a~~vl~~r~~~~~~~LTi~eVn~~Ld~LA~~~~---~~~ 144 (1160)
.|+|+|++++|+++++.++.+|.+|++++. +...||||.+|++++++|+... ++|||.+||+.|++||..+| +..
T Consensus 88 ~L~Kai~~~~g~~~~~~~~~~L~~wk~~~~~~~~~GDlg~va~~~~~~r~~~~-~~LTv~~V~~~L~~IA~~~g~~s~~~ 166 (240)
T 4htp_A 88 MLAKLYIELLNLPRDGKDALKLLNYRTPTGTHGDAGDFAMIAYFVLKPRCLQK-GSLTIQQVNDLLDSIASNNSAKRKDL 166 (240)
T ss_dssp HHHHHHHHHTTCCTTSHHHHHHHTC----------CCHHHHHHHHHTTSSCCS-CCCBHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHCCCcchHHHHHHHhccccccccccCCCHHHHHHHHHHccCCCC-CCcCHHHHHHHHHHHHHhhCcccHHH
Confidence 999999999999999999999999998754 4778999999999998877543 78999999999999999876 455
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhhhccCCcccccccccCccHHHHHhhhCCHHHHHHHHhhhhcccccc
Q 001083 145 KISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQ 216 (1160)
Q Consensus 145 k~~il~~ll~~~t~~E~k~l~RiIlkdLriGi~e~til~~~hpda~~~~~~~~DL~~V~~~L~~~~~~~~~~ 216 (1160)
|..+|..||.+||+.|+|||+|||+|+||||+++++|+.+|||+++++|++++||+.||+.|++|..++...
T Consensus 167 k~~~l~~Ll~~~t~~E~k~liRiil~~lriG~~e~~vl~a~h~~~~~a~~~~~dL~~V~~~l~~~~~~L~~~ 238 (240)
T 4htp_A 167 IKKSLLQLITQSSALEQKWLIRMIIKDLKLGVSQQTIFSVFHNDAAELHNVTTDLEKVCRQLHDPSVGLSDI 238 (240)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHTCCCCSSCHHHHHHHHCTTHHHHHHHHCCHHHHHHHTCSTTSCTTC-
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHhcccccCccHhHHHHHhChhHHHHHHhhCCHHHHHHHHhCchhhHhhc
Confidence 678999999999999999999999999999999999999999999999999999999999999888777654
No 11
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-35 Score=327.48 Aligned_cols=246 Identities=18% Similarity=0.287 Sum_probs=169.2
Q ss_pred CCCcccCeEEEEEcCC------CCCChHHHHHHHHHcCCEEEecCCCCc----eEEEEecCCChhhHhhhcCC-Ceeecc
Q 001083 654 ETSIFSDMVFYFVNVP------PAYSLDSLHKMVVENGGTFSMNLNNSV----THCVAADNKGLKYEAAKRRG-DVIHYS 722 (1160)
Q Consensus 654 ~s~lF~G~~F~vv~~~------~~~~k~eL~klI~~~GG~~v~n~~~~~----Th~Ia~~~~~~K~~~a~~~~-~VV~p~ 722 (1160)
.++||+|+.|||+++. ...++++|+++|.+|||++++++.... +|+|+++..+++++.+...+ +||+|+
T Consensus 2 ~s~lF~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~~~~~t~~~~~~~iI~~~~t~k~~~~~~~~~~vV~p~ 81 (264)
T 1z56_C 2 ISNIFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISCKTTTECKALIDRGYDILHPN 81 (264)
T ss_dssp -CCCCCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCCSSCCCCCSSCCEEEECSCCGGGGGGTTTTCCCBCSS
T ss_pred ccccCCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeecCCCCccCccceEEEecCCcHHHHHHHhCCCCEEech
Confidence 4789999999997653 235799999999999999988764322 33444677889999887776 999999
Q ss_pred hHHHHHhcCccCCCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhhHHhhhc-CCCCCC
Q 001083 723 WVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKY-CPQDKW 801 (1160)
Q Consensus 723 WV~dCi~~~~lLp~~p~~~l~~s~~t~~~~~~~~D~~gDSy~~~~~~~~L~~ll~~i~~~~~~~~i~~l~~~~-~~~~~~ 801 (1160)
||+||++++++||++|||+++.++.+++.++.++|+|||||+.++++++|+.++++|....... .++..+ ....+.
T Consensus 82 Wv~dci~~~~llp~~~y~~~~~~~~~~~~~~~~~d~~gdsy~~~~~~~~l~~~l~~~~~~~~~~---~~~~~~~~~~~~~ 158 (264)
T 1z56_C 82 WVLDCIAYKRLILIEPNYCFNVSQKMRAVAEKRVDCLGDSFENDISETKLSSLYKSQLSLPPMG---ELEIDSEVRRFPL 158 (264)
T ss_dssp TTHHHHSSCSCCCCCSCBSCCCGGGTHHHHGGGBCSSSCBSSSCCCHHHHHHTTSCCSCCCCCC---CCSSCCSCCCCCC
T ss_pred HHHHHhhcCCCCCCChHHhhcCCHHHHHHHHHhccccCCccccCCCHHHHHHHHHhcccccchh---hhhhhcccccCch
Confidence 9999999999999999999999999999999999999999999999999999999886532111 111111 223578
Q ss_pred ccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCCCceEEEEecCCCc--ccchhhhHHHHHHHhhh
Q 001083 802 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGY--DVNFNSLTESFTAREKH 879 (1160)
Q Consensus 802 ~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~vTHVVV~~~~~~--~~~~~~l~~~l~~~~~~ 879 (1160)
.||+||+|||+++... ..++.+..+|+++||+++++++.+||+||..+.+. ......+++++......
T Consensus 159 ~lF~g~~~yl~~~~~~----------~~~~~l~~~i~~~GG~v~~~l~~~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (264)
T 1z56_C 159 FLFSNRIAYVPRRKIS----------TEDDIIEMKIKLFGGKITDQQSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKA 228 (264)
T ss_dssp C------------------------------CHHHHHHHTTSCCCCSSSCSEEECCCSSTTTHHHHSSHHHHTTTTTTTS
T ss_pred hhhCCeEEEEecCCCc----------hhHHHHHHHHHHcCCEEecccCCCEEEEEeCCCccchHHHHHHHHHHHHhhccc
Confidence 8999999999996421 13567889999999999999998777766643321 11233344433211000
Q ss_pred hccCCc-cEEeccchHHHHHHcCCccCCCCCCCC
Q 001083 880 LLWNKK-LHVVRSQWLEDCLAKEQKSEEYEYSLK 912 (1160)
Q Consensus 880 ~~~~~~-~~IVt~~Wl~eci~~~~~v~Ee~Y~v~ 912 (1160)
...... ++||+++||++|+++|++++|+.|.+.
T Consensus 229 ~~~~~~~~~iV~~~Wv~dci~~~~ll~e~~Y~~~ 262 (264)
T 1z56_C 229 SDTIPKIARVVAPEWVDHSINENCQVPEEDFPVV 262 (264)
T ss_dssp SSSCCCCCEEECTHHHHHHHTTSCCCSSCCC---
T ss_pred ccccCCCCEEecHHHHHHHHHcCCcCCHHHcCCC
Confidence 000123 699999999999999999999999764
No 12
>1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} SCOP: b.40.4.6 d.142.2.3
Probab=99.98 E-value=1.8e-32 Score=320.48 Aligned_cols=313 Identities=16% Similarity=0.181 Sum_probs=211.0
Q ss_pred hhhCCHHHHHHHHhhhhccccccccccCCccccccccccCChHHHH-HhcCCCcEEEEEecceEEEEEEE-----eCCEE
Q 001083 194 NVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAW-RKLHGKEVVIECKFDGDRIQIHK-----NGSEI 267 (1160)
Q Consensus 194 ~~~~DL~~V~~~L~~~~~~~~~~~i~~g~p~~PmLA~~~~~~~~~~-~~~~~~~~~~E~K~DGeR~qih~-----~g~~v 267 (1160)
.++.+|..+|..|.+.. ...|....|+.. ....+ ..+...+|++|+||||+|+|+|+ .|+.+
T Consensus 20 ~~~~~l~~~v~~l~~~~-------~~~FPg~~Pvsl-----~~~~l~~~l~~~~~~ve~K~DG~R~ll~~~~~~~~g~~v 87 (395)
T 1p16_A 20 EETKELRLMVAELLGRR-------NTGFPGSQPVSF-----ERRHLEETLMQKDYFVCEKTDGLRCLLFLINDPDKGEGV 87 (395)
T ss_dssp HHHHHHHHHHHHHHTCS-------CCSCCCEEEEEC-----CHHHHHTHHHHSCEEEEEEECSEEEEEEEEEETTTEEEE
T ss_pred HHHHHHHHHHHHHHCCC-------CCCCCCCceecc-----cHHHHHHhhCcCCEEEEECccceEEEEEEeecccCCCEE
Confidence 35567888887776421 122222233321 11223 34445689999999999999999 56789
Q ss_pred EEEeCCCCCCC---cchhhHHHHHHH-hcccCceeeceeEEEEeCCCCcccccccHHHHHHHhccCCCCCCccEEEEEEe
Q 001083 268 HYFSRSFLDHS---EYGHAMSKIIEQ-NVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFD 343 (1160)
Q Consensus 268 ~~fSR~g~d~t---~~~~~l~~~l~~-~~~~~~~ILDGElv~~d~~~~~~~pF~~lq~i~~~~r~~~~~~~~~~~~~vFD 343 (1160)
.++||+|++++ .+||.+.+.... .....++|||||||+++... ...+++|+|||
T Consensus 88 ~L~sR~~~~~~i~~~~FP~~~~~~~~~~~~~~~~vLDGElV~~~~~~----------------------~~~~~~f~~FD 145 (395)
T 1p16_A 88 FLVTRENDYYFIPNIHFPLSVNETREKPTYHHGTLLDGELVLENRNV----------------------SEPVLRYVIFD 145 (395)
T ss_dssp EEEETTCCEEECCSCCCCSCTTCCSSSCCCCSSEEEEEEEEEECCSS----------------------SCCEEEEEEEE
T ss_pred EEEeCCCceEEeccccCCcccccccchhccCCcceeeeEEEEeccCC----------------------CcceeEEEEEE
Confidence 99999999964 468876543210 11257899999999976310 01348999999
Q ss_pred eeecCCcccccCCHHHHHHHHHHhh-ccCCCccee---eccCCCCCccccCCCCCccceecCCHHHHHHHHHH--HHHcC
Q 001083 344 VLYVGDTSVIHQSLKERHELLQKVV-KPSKGRLET---LVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKE--TIENR 417 (1160)
Q Consensus 344 iL~lng~sl~~~pl~eRr~~L~~~v-~~~~~~~~i---~~p~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~--ai~~g 417 (1160)
||++||++|+++||.+|+++|++++ .+....+.. +.......++|+.. .......+.++|+. ++.+|
T Consensus 146 lL~~~G~dl~~~pl~eR~~~L~~~i~~~~~~~~~~~~~~~~~~~~pf~v~~~-------~~~~~~~~~~~~~~~~~~~~g 218 (395)
T 1p16_A 146 ALAIHGKCIIDRPLPKRLGYITENVMKPFDNFKKHNPDIVNSPEFPFKVGFK-------TMLTSYHADDVLSKMDKLFHA 218 (395)
T ss_dssp EEEETTEECTTSCHHHHHHHHHHHTHHHHHHHHHHCHHHHSCTTSCCEEEEC-------CCEEGGGTHHHHTTGGGCSSC
T ss_pred EEEECCeEcccCCHHHHHHHHHHHhhcccHhhhhcCccccccccCceEEEEe-------cchhHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999965 321100000 00000001111110 01123445566665 34689
Q ss_pred CceEEEecCCCCCcCCCCCCCeEEEccccccCCCcccEEEEEEEe--------CCCCCCCcc---ce----EEEEEecCC
Q 001083 418 DEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYY--------GSGRRGGEV---AQ----FLVALAERP 482 (1160)
Q Consensus 418 ~EGlVlK~~ds~Y~pGkRs~~WlKlKpeY~~~g~~lDlvIIG~~~--------G~Grr~g~~---gs----fllg~~d~~ 482 (1160)
.||||+|+.+|+|.+|+ +..|+|+|+.|. .++|++|++++. |+|++ +.+ ++ |.+.++++.
T Consensus 219 ~EGlI~K~~ds~Y~~Gr-~~~wlKwK~~~~---~TvDfvl~~~~~~~~~~~~~g~G~~-~~~~dy~~~p~~~~l~v~~~~ 293 (395)
T 1p16_A 219 SDGLIYTCAETPYVFGT-DQTLLKWKPAEE---NTVDFQLEFVFNEVQDPDLDERDPT-STYLDYDAKPNLIKLRVWQGS 293 (395)
T ss_dssp EEEEEEEESSSCCCSEE-EEEEEEECCGGG---CCEEEEEEEECEEEECTTSCTTSTT-CEEEECSSCCSEEEEEEECST
T ss_pred CCeEEEEeCCCCcCCCC-ccceEEEecCCC---eEEEEEEEEEecccccccccccCcc-ccccccccccceeEEEEEeCC
Confidence 99999999999999995 469999999764 589999999876 77876 555 33 777888654
Q ss_pred CCCCCCceEEEEeeecCCCCHHHHHHHHHhhcccccccCCCCCCCCCcccccCCCCCCCcEEEeCCcceEEEEEEeeeee
Q 001083 483 APDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRT 562 (1160)
Q Consensus 483 ~~~~~~~~~~s~~kVgtG~sdeel~~l~~~l~~~~~~~~~~~~~pP~~~~~~~~~~~~Pdvwi~~P~~s~Vlev~~~i~~ 562 (1160)
. .++.|+++ |||++++++|.+.++++ ...|+||..+.
T Consensus 294 ~------~~~~f~~~--~ltd~e~~~l~~~~~~~---------------------------------~~~IvEc~~~~-- 330 (395)
T 1p16_A 294 N------VHTDFAKL--DLSDDDWERLKALEQPL---------------------------------QGRIAECRQST-- 330 (395)
T ss_dssp T------CEEEEEEE--CCCHHHHHHHHHSSSCC---------------------------------TTCEEEEEECS--
T ss_pred c------ccceeeEE--EeCHHHHHHhHhhcccC---------------------------------CCEEEEEEeec--
Confidence 2 36678887 89999999887543211 12468887542
Q ss_pred eecccccCCceeeCceeeeeecCCC-ccCcCCHHHHHHHHHcc
Q 001083 563 IRSEVFSAPYSLRFPRIDRVRYDKP-WHDCLDVQSFVELVHSS 604 (1160)
Q Consensus 563 ~~s~~~~~g~tLRFPR~~riR~DK~-~~d~~t~~el~el~~~~ 604 (1160)
+ ..| ||||.|+|+||+ +++..|++++.+++...
T Consensus 331 --~---~~g----~wr~~R~R~DK~~pN~~~t~~~vl~si~~~ 364 (395)
T 1p16_A 331 --T---KKG----YWEMLRFRNDKSNGNHISVVEKILVSIKDG 364 (395)
T ss_dssp --S---STT----EEEEEEECTTCSSCCBHHHHHHHHHHHHHS
T ss_pred --C---CCC----ccEEEEEeCCCCCcChHHHHHHHHHHHHcc
Confidence 1 234 999999999999 88888888888887543
No 13
>1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A {Paramecium bursaria chlorella virus 1} SCOP: b.40.4.6 d.142.2.3 PDB: 1ckn_A* 1cko_A* 1ckn_B*
Probab=99.95 E-value=3.2e-28 Score=277.64 Aligned_cols=235 Identities=18% Similarity=0.222 Sum_probs=163.9
Q ss_pred cCCCcEEEEEecceEEEEEEEe---C-CEEEEEeCCCCCCCcchhhHHHHHHHhcccCceeeceeEEEEeCCCCcccccc
Q 001083 242 LHGKEVVIECKFDGDRIQIHKN---G-SEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFG 317 (1160)
Q Consensus 242 ~~~~~~~~E~K~DGeR~qih~~---g-~~v~~fSR~g~d~t~~~~~l~~~l~~~~~~~~~ILDGElv~~d~~~~~~~pF~ 317 (1160)
+...+|++|+||||+|+|+|++ | +.+.+|||+|++++..+|++.. ....++|||||||++...
T Consensus 72 L~~~~y~ve~K~DG~R~ll~~~~~~g~g~v~L~sR~~~~~t~~fp~~~~-----~~~~~~vLDGElv~~~~~-------- 138 (330)
T 1ckm_A 72 LKQNKYVVSEKTDGIRFMMFFTRVFGFKVCTIIDRAMTVYLLPFKNIPR-----VLFQGSIFDGELCVDIVE-------- 138 (330)
T ss_dssp HHHSCEEEEEEECSEEEEEEEEEETTEEEEEEECTTCCEEECCCSCCCT-----TGGGCEEEEEEEEEETTT--------
T ss_pred CCcCCEEEEECcceEEEEEEEEecCCCCEEEEEeCCCCEEeccChhhhh-----ccCCCeeEEEEEEEEcCC--------
Confidence 3345799999999999999998 4 7899999999999987776531 235799999999995310
Q ss_pred cHHHHHHHhccCCCCCCccEEEEEEeeeecCCcccccCCHHHHHHHHHHhhccCCCcceeeccCCCCCccccCCCCCccc
Q 001083 318 SNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWS 397 (1160)
Q Consensus 318 ~lq~i~~~~r~~~~~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~~~~~v~~~~~~~~~ 397 (1160)
.. +.|++||||++||++|++.||.+|+++|++++...... +. ..++|+.. ..
T Consensus 139 ----------------~~-~~f~vFDlL~~~G~dl~~~pl~eRr~~L~~~l~~~~~~-----~~--~~~~i~~~----~~ 190 (330)
T 1ckm_A 139 ----------------KK-FAFVLFDAVVVSGVTVSQMDLASRFFAMKRSLKEFKNV-----PE--DPAILRYK----EW 190 (330)
T ss_dssp ----------------TE-EEEEEEEEEEETTEECTTSCHHHHHHHHHHHHTTCCCC-----TT--SSSEEEEC----CC
T ss_pred ----------------Ce-EEEEEEeeeeeCCcccccCCHHHHHHHHHHHHhhhccc-----CC--CCeEEEEE----EE
Confidence 02 78999999999999999999999999999998632100 00 00111110 01
Q ss_pred eecCCHHHHHHHHHHHHHc--CCceEEEecCCCCCcCCCCCCCeEEEccccccCCCcccEEEEEEEeCCCCCCCccceEE
Q 001083 398 LVAHNVDEVEKFFKETIEN--RDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFL 475 (1160)
Q Consensus 398 ~~~~~~~ei~~~~~~ai~~--g~EGlVlK~~ds~Y~pGkRs~~WlKlKpeY~~~g~~lDlvIIG~~~G~Grr~g~~gsfl 475 (1160)
... +.+++.+-+..++.+ |.||||+|+.+|+|.+| |+.+|+|+||.+. .++|++|++ |.| .
T Consensus 191 ~~~-~~~~~~~~~~~~~~~~yg~EGlI~K~~dspY~~G-r~~~~lKwK~~~~---~tvDfvi~~---g~g---------~ 253 (330)
T 1ckm_A 191 IPL-EHPTIIKDHLKKANAIYHTDGLIIMSVDEPVIYG-RNFNLFKLKPGTH---HTIDFIIMS---EDG---------T 253 (330)
T ss_dssp EET-TCHHHHHHHHHHHHHHSCEEEEEEEESSSCCCCE-EEEEEEEECSTTC---CCEEEEECS---TTC---------C
T ss_pred Eeh-hHHHHHHHHHHHHhccCCCceEEEeeCCCcccCC-CccCeEEEEeCCC---ceEEEEEEc---cCC---------e
Confidence 112 233333333567788 99999999999999999 5689999999653 589998883 333 2
Q ss_pred EEEecCCCCCCCCceEEEEeeecCCCCHHHHHHHHHhhcccccccCCCCCCCCCcccccCCCCCCCcEEEeCCcceEEEE
Q 001083 476 VALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILS 555 (1160)
Q Consensus 476 lg~~d~~~~~~~~~~~~s~~kVgtG~sdeel~~l~~~l~~~~~~~~~~~~~pP~~~~~~~~~~~~Pdvwi~~P~~s~Vle 555 (1160)
+|+++... +.+++|+++. +. + . + ..|+|
T Consensus 254 ~gl~~~~~-----~~~vp~~~~~---------------k~--------------~---------------~-~--g~IvE 281 (330)
T 1ckm_A 254 IGIFDPNL-----RKNVPVGKLD---------------GY--------------Y---------------N-K--GSIVE 281 (330)
T ss_dssp EEEEETTT-----TEEEECCCCS---------------SC--------------C---------------C-T--TCEEE
T ss_pred EEEEeCCC-----Cceeeeeeee---------------hh--------------h---------------c-C--CeEEE
Confidence 35555432 2566666543 00 0 0 1 24788
Q ss_pred EEeeeeeeecccccCCceeeCceeeeeecCCCccCcCCHHHHHHHHH
Q 001083 556 ITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVH 602 (1160)
Q Consensus 556 v~~~i~~~~s~~~~~g~tLRFPR~~riR~DK~~~d~~t~~el~el~~ 602 (1160)
|..+ .| ||||.|+|+||+ ++++++.+..+..
T Consensus 282 ~~~~----------~G----~wr~~R~R~DK~--~~n~~~t~~~v~~ 312 (330)
T 1ckm_A 282 CGFA----------DG----TWKYIQGRSDKN--QANDRLTYEKTLL 312 (330)
T ss_dssp EEEE----------TT----EEEEEEECTTCS--SCCBHHHHHHHHH
T ss_pred EEEE----------CC----ceEEEEEeCCCC--CCCHHHHHHHHHH
Confidence 8653 34 999999999999 5666666665554
No 14
>3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens}
Probab=99.92 E-value=1e-25 Score=225.84 Aligned_cols=127 Identities=33% Similarity=0.617 Sum_probs=97.9
Q ss_pred EEEEEecceEEEEEEEeCCEEEEEeCCCCCCCcchhhHHH------HHHHhc--ccCceeeceeEEEEeCCCCccccccc
Q 001083 247 VVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSK------IIEQNV--LVDRCILDGEMLVWDTSLNRFAEFGS 318 (1160)
Q Consensus 247 ~~~E~K~DGeR~qih~~g~~v~~fSR~g~d~t~~~~~l~~------~l~~~~--~~~~~ILDGElv~~d~~~~~~~pF~~ 318 (1160)
|++|+||||+|||+|++|+++++|||||+++|..+|++.. .+...+ ...+||||||||+||+.++.|.+++.
T Consensus 1 f~~E~K~DG~R~q~~~~g~~v~l~SR~g~d~t~~fPel~~~~~l~~~i~~~~~~~~~~~iLDGEiv~~d~~~~~f~~~~~ 80 (139)
T 3vnn_A 1 FYIETKLDGERMQMHKDGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQTFMQKGT 80 (139)
T ss_dssp CCCCCCCCCEEEEEEEETTEEEEECSSCCBCTTTSCSSTTC--CCSGGGSCCCTTCCEEEEEEEEEEEETTTTEECCC--
T ss_pred CEEEEEECeEEEEEEEECCEEEEEeCCCCCchhhccchhhhcchhHHHHHHHhccCCceEeeeEEEEecCCCCCHHHHHh
Confidence 6899999999999999999999999999999999887653 122222 24789999999999987776666643
Q ss_pred HHHHHHHhccCCCCCCccEEEEEEeeeecCCcccccCCHHHHHHHHHHhhccCCCccee
Q 001083 319 NQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLET 377 (1160)
Q Consensus 319 lq~i~~~~r~~~~~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i 377 (1160)
...+.+. ......++||++|||||+||++|++.||.+||++|++++.+.++++++
T Consensus 81 ~~~~~~~----~~~~~~~~~~~vFDlL~l~G~~L~~~pl~eRr~~L~~l~~~~~~~~~~ 135 (139)
T 3vnn_A 81 KFDIKRM----VEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPIPGRIEI 135 (139)
T ss_dssp ---------------CCEEEEEEEEEEEETTEECSSSCHHHHHHHHHHHCCCBTTBSCB
T ss_pred hhhhhhh----hhccCceEEEEEEEEEeECCcCcccCCHHHHHHHHHHHhhcCCCeEEE
Confidence 2211110 011123599999999999999999999999999999999988887654
No 15
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.85 E-value=4.4e-21 Score=216.10 Aligned_cols=183 Identities=23% Similarity=0.350 Sum_probs=146.8
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhcCC-CeeecchHHHHHhcCcc
Q 001083 655 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKKL 733 (1160)
Q Consensus 655 s~lF~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~~~~~Th~Ia~~~~~~K~~~a~~~~-~VV~p~WV~dCi~~~~l 733 (1160)
+.+|+|+.||+.+... ..+.+|.++|..+||+++.+++..+||+|+....+.||..|...+ +||+++||.+|+..++.
T Consensus 103 ~~~l~g~~~~~tG~~~-~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~~t~Ky~~A~~~gi~IV~~~Wl~~c~~~~~~ 181 (298)
T 3olc_X 103 NMVMSDVTISCTSLEK-EKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPILLPSWIKTLWEKSQE 181 (298)
T ss_dssp CCTTTTCEEEEESCCH-HHHHHHHHHHHHTTCEECSSCCTTCCEEEESSSCSHHHHHHHHTTCCEECHHHHHHHHHHHHT
T ss_pred ccccCCeEEEeCCCcH-HhHHHHHHHHHHCCCEEecCcCCCeeEEEEeCCCChHHHHHHHCCCeEeeHHHHHHHHHcCCc
Confidence 4699999999976553 478999999999999999999888999999988899999999888 99999999999999988
Q ss_pred CCCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhhHHhhhcCCCCCCccCCCeEEEEcc
Q 001083 734 LQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYH 813 (1160)
Q Consensus 734 Lp~~p~~~l~~s~~t~~~~~~~~D~~gDSy~~~~~~~~L~~ll~~i~~~~~~~~i~~l~~~~~~~~~~~lF~gc~~yl~~ 813 (1160)
+++.++ ++ + . + ...+..+|.||+||+.|
T Consensus 182 ~~~~~~-----~~-----~--~-------~---------------------------------~~~~~~~f~g~~i~~tG 209 (298)
T 3olc_X 182 KKITRY-----TD-----I--N-------M---------------------------------EDFKCPIFLGCIICVTG 209 (298)
T ss_dssp TCCSSG-----GG-----S--C-------G---------------------------------GGGBCCTTTTCEEEECS
T ss_pred CCcccc-----cc-----c--c-------c---------------------------------ccccccccCCeEEEEeC
Confidence 765431 00 0 0 0 00134589999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC--CceEEEEecCCCcccchhhhHHHHHHHhhhhccCCccEEecc
Q 001083 814 STEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA--NATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRS 891 (1160)
Q Consensus 814 ~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls--~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~IVt~ 891 (1160)
+.. .++..+..+|..+||+++..++ .|||||+....+. .++..+ ...++||++
T Consensus 210 ~~~-----------~~r~~l~~li~~~GG~~~~~ls~~~~THLI~~~~~g~--K~~~A~------------~~gi~IV~~ 264 (298)
T 3olc_X 210 LCG-----------LDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPKGQ--KYECAK------------RWNVHCVTT 264 (298)
T ss_dssp CCH-----------HHHHHHHHHHHHTTCEECSSCCTTTCCEEECSSSCSH--HHHHHH------------HTTCEEECH
T ss_pred CCC-----------ccHHHHHHHHHHcCCEEeceecCCCceEEEEeCCCch--HHHHHH------------HCCCeEEeH
Confidence 752 2467899999999999999998 4999999875432 222111 246899999
Q ss_pred chHHHHHHcCCccCCCCCCCCCCC
Q 001083 892 QWLEDCLAKEQKSEEYEYSLKPTG 915 (1160)
Q Consensus 892 ~Wl~eci~~~~~v~Ee~Y~v~~~~ 915 (1160)
+||.+|++.++++||+.|.+..+.
T Consensus 265 ~Wl~dsi~~g~~lde~~Y~l~~~~ 288 (298)
T 3olc_X 265 QWFFDSIEKGFCQDESIYKTEPRP 288 (298)
T ss_dssp HHHHHHHHHTSCCCGGGSBSCC--
T ss_pred HHHHHHHHCCCCCCchhcCCCCCc
Confidence 999999999999999999987765
No 16
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae}
Probab=99.83 E-value=3e-21 Score=225.33 Aligned_cols=186 Identities=19% Similarity=0.224 Sum_probs=131.2
Q ss_pred HhcCCCcEEEEEecceEEEEEEEe-----C-CEEEEEeCCCCCCC---cchhhHHHH----HHHhcccCceeeceeEEEE
Q 001083 240 RKLHGKEVVIECKFDGDRIQIHKN-----G-SEIHYFSRSFLDHS---EYGHAMSKI----IEQNVLVDRCILDGEMLVW 306 (1160)
Q Consensus 240 ~~~~~~~~~~E~K~DGeR~qih~~-----g-~~v~~fSR~g~d~t---~~~~~l~~~----l~~~~~~~~~ILDGElv~~ 306 (1160)
..+...+|++++|+||.|+|+++. | +.+.++||++..++ ..||.+... +... ...++|||||||++
T Consensus 60 ~~L~~~dY~V~eK~DGiR~Ll~i~~~~~~g~g~v~LidR~~~~~~v~~~~FP~~~~~~~~~~l~~-~~~~TlLDGElV~d 138 (461)
T 3kyh_C 60 EKLLAHDYYVCEKTDGLRVLMFIVINPVTGEQGCFMIDRENNYYLVNGFRFPRLPQKKKEELLET-LQDGTLLDGELVIQ 138 (461)
T ss_dssp HTTSSSCEEEEEEECSEEEEEEEEECTTTCCEEEEEECSSSCEEEECCCCCCCCSSCCSSGGGTC-CCCSEEEEEEEEEE
T ss_pred HHhccCCEEEEEcccceEEEEEEeccccCCCceEEEEeCCCCeEEcccccCCcccccchhhhhhc-cCCCeEEEEEEEec
Confidence 456778999999999999999886 3 68999999999985 356765431 1111 35789999999996
Q ss_pred eCCCCcccccccHHHHHHHhccCCCCCCccEEEEEEeeeecCCcccccCCHHHHHHHHHHhhcc-CCCcceeeccC--CC
Q 001083 307 DTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKP-SKGRLETLVPD--HG 383 (1160)
Q Consensus 307 d~~~~~~~pF~~lq~i~~~~r~~~~~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~-~~~~~~i~~p~--~~ 383 (1160)
... ++ ...++.|++||||++||+++++.||.+|+++|+++|.. ....+.. .|. ..
T Consensus 139 ~~~------~~---------------~~~~~~y~~FDlL~~~G~dl~~~pl~eR~~~Le~~I~~P~~~~~~~-~p~~~~~ 196 (461)
T 3kyh_C 139 TNP------MT---------------KLQELRYLMFDCLAINGRCLTQSPTSSRLAHLGKEFFKPYFDLRAA-YPNRCTT 196 (461)
T ss_dssp ECT------TT---------------CCEEEEEEEEEEEEETTEECSSSBHHHHHHHHHHTTHHHHHHHHHH-CSTTCSC
T ss_pred cCC------CC---------------CccceEEEEEEEEeECCcCcccCCHHHHHHHHHHHhcccchhhhhc-ccccccc
Confidence 521 10 01349999999999999999999999999999988732 1100000 000 00
Q ss_pred CCccccCCCCCccceecCCHHHHHHHHHH--HHHcCCceEEEecCCCCCcCCCCCCCeEEEccccccCCCcccEEEE
Q 001083 384 LNSHVRPQGEPCWSLVAHNVDEVEKFFKE--TIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLII 458 (1160)
Q Consensus 384 ~~~~v~~~~~~~~~~~~~~~~ei~~~~~~--ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKlKpeY~~~g~~lDlvII 458 (1160)
..+.|+. .......++..+|+. ++..|.||||+|+.+++|.+|.|+..|+|+||.+. .++|++++
T Consensus 197 ~pF~V~~-------K~~~~~~~~~~l~~~~~~l~~~~EGLv~k~~~spY~~Ggr~~~~lKwKp~~~---nTVDF~L~ 263 (461)
T 3kyh_C 197 FPFKISM-------KHMDFSYQLVKVAKSLDKLPHLSDGLIFTPVKAPYTAGGKDSLLLKWKPEQE---NTVDFKLI 263 (461)
T ss_dssp CCSEEEE-------CCCEEGGGHHHHHHHHTTCSSCEEEEEEEESSSBCCSSSEEEEEEECCCTTT---CCCEEEEE
T ss_pred CCcEEEe-------ccchhhhhHHHHHHhhhhccCCCCeEEEEeCCCCCcCCCcCCCeEEEEcCCC---eeEEEEEE
Confidence 0001110 000122456666663 37899999999999999999878999999999764 58998766
No 17
>3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD, lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP GUN; 2.81A {Mus musculus} PDB: 3s24_A
Probab=99.83 E-value=4e-21 Score=218.94 Aligned_cols=176 Identities=19% Similarity=0.322 Sum_probs=114.2
Q ss_pred CCCcEEEEEecceEEEEEEEe-CCEEEEEeCCCCCCC---cchhhHHHHHHHhcccCceeeceeEEEEeCCCCccccccc
Q 001083 243 HGKEVVIECKFDGDRIQIHKN-GSEIHYFSRSFLDHS---EYGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGS 318 (1160)
Q Consensus 243 ~~~~~~~E~K~DGeR~qih~~-g~~v~~fSR~g~d~t---~~~~~l~~~l~~~~~~~~~ILDGElv~~d~~~~~~~pF~~ 318 (1160)
...+|++|+|+||+|+|+++. ++.+.++||+|.+++ ..+|.+... .....++|||||||+++.. |
T Consensus 61 ~~~~y~v~~K~DG~R~ll~i~~~~~v~L~sR~~~~~~~~~~~FP~~~~~---~~~~~~tvLDGElV~~~~~-g------- 129 (343)
T 3rtx_A 61 EQKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDL---RMHLSNTLLDGEMIIDKVN-G------- 129 (343)
T ss_dssp HHSCEEEEEECCCEEEEEEECSTTCEEEECTTCCEEEETTCCCEETTEE---EEECCSEEEEEEEEEEESS-S-------
T ss_pred ccCCEEEEECCCceEEEEEEEcCCEEEEEeCCCCeEEeccccCCcchhh---hccCCCeEEEEEEEEecCC-C-------
Confidence 345899999999999999998 789999999999985 367765442 1246789999999998632 1
Q ss_pred HHHHHHHhccCCCCCCccEEEEEEeeeecCCcccccCCHHHHHHHHHHh-hccCC-----CcceeeccCCCCCccccCCC
Q 001083 319 NQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKV-VKPSK-----GRLETLVPDHGLNSHVRPQG 392 (1160)
Q Consensus 319 lq~i~~~~r~~~~~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~-v~~~~-----~~~~i~~p~~~~~~~v~~~~ 392 (1160)
...+.|++||+|++||+++++.||.+|+++|++. +.|.. +.+ ..+. .++.|+..
T Consensus 130 ---------------~~~~~~~~FDlL~~~G~dl~~~pl~eR~~~L~~~i~~p~~~~~~~~~~--~~~~--~pf~vr~K- 189 (343)
T 3rtx_A 130 ---------------QAVPRYLIYDIIKFNAQPVGDCDFNIRLQCIEREIISPRHEKMKTGLI--DKTQ--EPFSVRPK- 189 (343)
T ss_dssp ---------------SEEEEEEEEEEEEBTTBCGGGSCHHHHHHHHHHHTHHHHHHHHHHSSC--CTTT--SSSEEEEC-
T ss_pred ---------------cEeeEEEEEEEEeECCcCcccCCHHHHHHHHHHHhhhHHHHHhhcccc--cccC--CCcEEEEE-
Confidence 0127999999999999999999999999999974 33210 000 0000 01112110
Q ss_pred CCccceecCCHHHHH-HHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEccccccCCCcccEEE
Q 001083 393 EPCWSLVAHNVDEVE-KFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLI 457 (1160)
Q Consensus 393 ~~~~~~~~~~~~ei~-~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKlKpeY~~~g~~lDlvI 457 (1160)
........+++. .-|..++.++.||||++..+ +|.+| |+..|+|+||.+. .++|+.+
T Consensus 190 ---~~~~~~~~~~ll~~~~~~~l~~~~dGlIf~~~~-~Y~~G-~~~~~lKwKp~~~---~tvDF~l 247 (343)
T 3rtx_A 190 ---QFFDINISRKLLEGNFAKEVSHEMDGLIFQPIG-KYKPG-RCDDILKWKPPSL---NSVDFRL 247 (343)
T ss_dssp ---CCEEGGGHHHHSCC----------CEEEEEESS-CCCCE-EEEEEEEECCSTT---CC-----
T ss_pred ---EeEehhhHHHHHhhhhHhhcCCCCCeEEEEECc-cCcCC-CCcceEEEecCcc---eEEEEEE
Confidence 012222333332 12467889999999999999 99988 7889999999764 4789866
No 18
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=99.78 E-value=5.6e-19 Score=195.28 Aligned_cols=196 Identities=14% Similarity=0.166 Sum_probs=137.5
Q ss_pred ccCCCCcccCeEEEEEcCCC----------------------------CCChHHHHHHHHHcCCEEEecCCCC------c
Q 001083 651 IKGETSIFSDMVFYFVNVPP----------------------------AYSLDSLHKMVVENGGTFSMNLNNS------V 696 (1160)
Q Consensus 651 ~~~~s~lF~G~~F~vv~~~~----------------------------~~~k~eL~klI~~~GG~~v~n~~~~------~ 696 (1160)
+...+.||.|+.||+++... ...+++|+++|.+|||++++++... +
T Consensus 9 ~p~~~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~~ 88 (259)
T 1kzy_C 9 LPLNKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQ 88 (259)
T ss_dssp CCSSTTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTCE
T ss_pred CCCCCcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCCC
Confidence 44578899999999965432 1468899999999999999887643 5
Q ss_pred eEEEEec-CCChhhHhhhcCC-CeeecchHHHHHhcCccCCCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHH
Q 001083 697 THCVAAD-NKGLKYEAAKRRG-DVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQ 774 (1160)
Q Consensus 697 Th~Ia~~-~~~~K~~~a~~~~-~VV~p~WV~dCi~~~~lLp~~p~~~l~~s~~t~~~~~~~~D~~gDSy~~~~~~~~L~~ 774 (1160)
||||+.. ..+.||..+...+ +||+++||.||+++++++|+++| ++....... ...+
T Consensus 89 t~LIa~~~~rt~K~l~ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y-~l~~g~s~~----------~~~~----------- 146 (259)
T 1kzy_C 89 CLLIADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNY-LLPAGYSLE----------EQRI----------- 146 (259)
T ss_dssp EEEEESSCCCSHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGGS-BCCCEEETT----------TTEE-----------
T ss_pred eEEEcCCCCCcHHHHHHHhcCCCCccHHHHHHHHHcCCcCCHHHc-cCCCCcccc----------cchh-----------
Confidence 8898743 4788998887777 99999999999999999999876 443211000 0000
Q ss_pred HhhccCCCCCcchhhHHhhhcCCCCCCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-----
Q 001083 775 LLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA----- 849 (1160)
Q Consensus 775 ll~~i~~~~~~~~i~~l~~~~~~~~~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls----- 849 (1160)
........+|+|+.||+.+... .. ..+.+..+++++||++...+.
T Consensus 147 --------------------~~~~~~~~LF~G~~I~i~~~~~---~~-------~~~~~~~Il~~~Ga~vv~~~~s~~~~ 196 (259)
T 1kzy_C 147 --------------------LDWQPRENPFQNLKVLLVSDQQ---QN-------FLELWSEILMTGGAASVKQHHSSAHN 196 (259)
T ss_dssp --------------------ECCCCCCCTTTTCEEEEEESCT---TT-------THHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred --------------------hhccccCCCCCCeEEEEecCCC---CC-------HHHHHHHHHHhcCCEEEeccccchhh
Confidence 0011235689999999988642 11 135788899999999887652
Q ss_pred -----CceEEEEecCCCcccchhhhHHHHHHHhhhhccCCccEEeccchHHHHHHcCCccCCCCCC
Q 001083 850 -----NATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYS 910 (1160)
Q Consensus 850 -----~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~IVt~~Wl~eci~~~~~v~Ee~Y~ 910 (1160)
..+||||.+.. . .. .. .+ . .....++||+.+||.+||..+++++++.|+
T Consensus 197 ~d~~~~~~~viv~d~~-~-~~-~~-~~-~-------a~~~~i~iVs~EWv~~sI~~~~ll~~~~hp 250 (259)
T 1kzy_C 197 KDIALGVFDVVVTDPS-C-PA-SV-LK-C-------AEALQLPVVSQEWVIQCLIVGERIGFKQHP 250 (259)
T ss_dssp CCSCGGGCSEEEECTT-C-CH-HH-HH-H-------HHHHTCCEECHHHHHHHHHHTSCCCTTSSG
T ss_pred hhccCCCCeEEEECCC-C-hH-HH-HH-H-------HHhcCCCEecHHHHHHHHHhCCcCCCCcCc
Confidence 35677775422 1 11 11 11 1 112458999999999999999999998773
No 19
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=99.78 E-value=9.1e-19 Score=190.05 Aligned_cols=199 Identities=16% Similarity=0.170 Sum_probs=135.3
Q ss_pred CcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEec------CCChhhHhhhcCC-CeeecchHHHHH
Q 001083 656 SIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAAD------NKGLKYEAAKRRG-DVIHYSWVLDCC 728 (1160)
Q Consensus 656 ~lF~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~~~~~Th~Ia~~------~~~~K~~~a~~~~-~VV~p~WV~dCi 728 (1160)
..+.++.||+.+.. ...+..|++++..+||+++.+++..+||+|+.. ..|.||..++..+ +||+++||.+|+
T Consensus 3 ~~~~~~~i~~sg~~-~~~~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~Wl~~~~ 81 (229)
T 1l0b_A 3 RAERDISMVVSGLT-PKEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVIKSI 81 (229)
T ss_dssp CCCCCCEEEEESCC-HHHHHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEETHHHHHHH
T ss_pred CCCCCeEEEEcCCC-HHHHHHHHHHHHHcCCEEeCCcCCCCCEEEEcCCccccccccHHHHHHHHCCCcEecHHHHHHHH
Confidence 46788999986544 345788999999999999999888899999875 4688999998888 999999999999
Q ss_pred hcCccCCCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhhHHhhhcCCCCCCccCCCeE
Q 001083 729 SQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCC 808 (1160)
Q Consensus 729 ~~~~lLp~~p~~~l~~s~~t~~~~~~~~D~~gDSy~~~~~~~~L~~ll~~i~~~~~~~~i~~l~~~~~~~~~~~lF~gc~ 808 (1160)
++++++|.++|.+.... +.........+ . .. .+..+|.||.
T Consensus 82 ~~~~~~~e~~y~~~~~~-----------------~~~~~~~~~~~---~------------r~-------~~~~lF~g~~ 122 (229)
T 1l0b_A 82 QERKLLSVHEFEVKGDV-----------------VTGSNHQGPRR---S------------RE-------SQEKLFEGLQ 122 (229)
T ss_dssp TTTSCCCSGGGBCCEET-----------------TTCSSSCHHHH---H------------HH-------HC--CCTTCE
T ss_pred HCCCcCChHHeEecccc-----------------ccccccccchh---h------------hh-------hhhhhhcCce
Confidence 99999999886543211 10000000000 0 00 0236899999
Q ss_pred EEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCCC------ceEEEEecCCC--cccchhhhHHHHHHHhhhh
Q 001083 809 IYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN------ATHVVVLSVLG--YDVNFNSLTESFTAREKHL 880 (1160)
Q Consensus 809 ~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~------vTHVVV~~~~~--~~~~~~~l~~~l~~~~~~~ 880 (1160)
|||++... ... ...|..+|+++||+++..+.. ++|+|+..... ....++.+.
T Consensus 123 ~~~~~~~~--~~~--------~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l~---------- 182 (229)
T 1l0b_A 123 IYCCEPFT--NMP--------KDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIG---------- 182 (229)
T ss_dssp EEECSCCS--SSC--------HHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC------------------------
T ss_pred EEEEecCC--CCC--------HHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccchhhhHHHHH----------
Confidence 99987321 111 457889999999999999864 57765544321 111122111
Q ss_pred ccCCccEEeccchHHHHHHcCCccCCCCCCCCCCC
Q 001083 881 LWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTG 915 (1160)
Q Consensus 881 ~~~~~~~IVt~~Wl~eci~~~~~v~Ee~Y~v~~~~ 915 (1160)
....++||+++||.+||..+++++++.|.+....
T Consensus 183 -~~~~i~iVs~~WlldsI~~~~~~~~~~Y~l~~~~ 216 (229)
T 1l0b_A 183 -QLCKGRLVMWDWVLDSISVYRCRDLDAYLVQNIT 216 (229)
T ss_dssp ------CEEETHHHHHHHHTTSCCCGGGGBCC---
T ss_pred -HHcCCeEeehhHHHHHHhcCCcCCccceEccccc
Confidence 1356899999999999999999999999887543
No 20
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=99.74 E-value=1.3e-17 Score=178.84 Aligned_cols=195 Identities=19% Similarity=0.217 Sum_probs=136.1
Q ss_pred cCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEec------CCChhhHhhhcCC-CeeecchHHHHHhcC
Q 001083 659 SDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAAD------NKGLKYEAAKRRG-DVIHYSWVLDCCSQK 731 (1160)
Q Consensus 659 ~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~~~~~Th~Ia~~------~~~~K~~~a~~~~-~VV~p~WV~dCi~~~ 731 (1160)
+++.||+.+.. ...++.|.+++..+||+++.+++..+||+|+.. ..+.||..++..+ +||+++||.||++++
T Consensus 3 ~~~~~~~sg~~-~~~~~~l~~~~~~~G~~~~~~~~~~~THli~~~~~~~~~~rt~k~~~a~~~g~~IV~~~Wl~~~~~~~ 81 (214)
T 1t15_A 3 KRMSMVVSGLT-PEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKER 81 (214)
T ss_dssp -CCEEEEESCC-HHHHHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHHHHHHHHTT
T ss_pred CcEEEEECCCC-HHHHHHHHHHHHHhCCEEeCccCCCCcEEEEeCCcccchhhhHHHHHHHhcCCEEeCHHHHHHHHHCC
Confidence 46778876543 456788999999999999999888899999875 3588998888888 999999999999999
Q ss_pred ccCCCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhhHHhhhcCCCCCCccCCCeEEEE
Q 001083 732 KLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYF 811 (1160)
Q Consensus 732 ~lLp~~p~~~l~~s~~t~~~~~~~~D~~gDSy~~~~~~~~L~~ll~~i~~~~~~~~i~~l~~~~~~~~~~~lF~gc~~yl 811 (1160)
+++|.++|.+.... +... ....... -+ . .....+|.||.|||
T Consensus 82 ~~~~e~~y~~~~~~-----------------~~~~-~~~~~~~----------------~r--~--~~~~~lF~g~~~~~ 123 (214)
T 1t15_A 82 KMLNEHDFEVRGDV-----------------VNGR-NHQGPKR----------------AR--E--SQDRKIFRGLEICC 123 (214)
T ss_dssp SCCCGGGGBCCEET-----------------TTBT-TCCHHHH----------------HH--T--CTTSCTTTTCEEEE
T ss_pred CcCChHHeEeeccc-----------------cccc-cccchhh----------------Hh--h--cCCCcccCCCEEEE
Confidence 99998876443211 1000 0000000 00 0 01346899999999
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCCC-----ceE-EEEecCCCccc--chhhhHHHHHHHhhhhccC
Q 001083 812 YHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN-----ATH-VVVLSVLGYDV--NFNSLTESFTAREKHLLWN 883 (1160)
Q Consensus 812 ~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~-----vTH-VVV~~~~~~~~--~~~~l~~~l~~~~~~~~~~ 883 (1160)
++... ... +..|..+|+.+||+++..+.. .+| ||+.++..... .+.. ....
T Consensus 124 ~~~~~--~~~--------~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~~~~~~~~-----------~a~~ 182 (214)
T 1t15_A 124 YGPFT--NMP--------TDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHA-----------IGQM 182 (214)
T ss_dssp CSCCS--SSC--------HHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSSCGGGGS-----------STTT
T ss_pred EecCC--CCC--------HHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCcccchhhHHH-----------HHHh
Confidence 87321 111 457889999999999998863 224 65554321110 1111 1124
Q ss_pred CccEEeccchHHHHHHcCCccCCCCCCCCC
Q 001083 884 KKLHVVRSQWLEDCLAKEQKSEEYEYSLKP 913 (1160)
Q Consensus 884 ~~~~IVt~~Wl~eci~~~~~v~Ee~Y~v~~ 913 (1160)
..++||+++||.+||..++++|++.|.+..
T Consensus 183 ~~~~iV~~~Wi~dsi~~~~~l~~~~Y~l~~ 212 (214)
T 1t15_A 183 CEAPVVTREWVLDSVALYQCQELDTYLIPQ 212 (214)
T ss_dssp CSSCEEEHHHHHHHHHHTSCCCSGGGBCCC
T ss_pred cCCcEEeccHHHHhHhhcCcCCCcceeecc
Confidence 578999999999999999999999998763
No 21
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=99.73 E-value=1.3e-17 Score=177.37 Aligned_cols=181 Identities=17% Similarity=0.237 Sum_probs=130.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHcCC-EEEecCCCCceEEEEec-CCChhhHhhhcCC-CeeecchHHHHHhcCccCCCCcc
Q 001083 663 FYFVNVPPAYSLDSLHKMVVENGG-TFSMNLNNSVTHCVAAD-NKGLKYEAAKRRG-DVIHYSWVLDCCSQKKLLQLQPK 739 (1160)
Q Consensus 663 F~vv~~~~~~~k~eL~klI~~~GG-~~v~n~~~~~Th~Ia~~-~~~~K~~~a~~~~-~VV~p~WV~dCi~~~~lLp~~p~ 739 (1160)
|+.. +.+...+++|.++|..+|| .++.+++..+||+|+.. ..|.||..++..+ .||+++||.+|++.|+++|.++|
T Consensus 14 ~~~s-gl~~~~~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~~~rT~K~l~ai~~g~~Iv~~~Wv~~~~~~g~~l~e~~y 92 (199)
T 3u3z_A 14 LVMT-SMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWSLELGHWISEEPF 92 (199)
T ss_dssp EEEE-SCCHHHHHHHHHHHHHHCSCEEESSCCTTEEEEEESSCCCBHHHHHHHHTTCEEEETHHHHHHHHHTSCCCSGGG
T ss_pred EEEc-CCCHHHHHHHHHHHHHcCCcEEecCCCCCCeEEEECCCCCCHHHHHHHHCCCcEEeHHHHHHHhhCCCCCChhhc
Confidence 4444 4445678889999999998 56688888899999976 3789999998888 99999999999999999999886
Q ss_pred cccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhhHHhhhcCCCCCCccCCCe-EEEEccCCCCC
Q 001083 740 YYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGC-CIYFYHSTEPL 818 (1160)
Q Consensus 740 ~~l~~s~~t~~~~~~~~D~~gDSy~~~~~~~~L~~ll~~i~~~~~~~~i~~l~~~~~~~~~~~lF~gc-~~yl~~~~~~~ 818 (1160)
.+-....... ...+..... .......||.|| .||+.++..
T Consensus 93 ~~~~~~~~~~-------------------~~rl~r~~~------------------~~~~~~~LF~g~~~~~v~~~~~-- 133 (199)
T 3u3z_A 93 ELSHHFPAAP-------------------LCRSECHLS------------------AGPYRGTLFADQPVMFVSPASS-- 133 (199)
T ss_dssp BCTTTCTHHH-------------------HHHHHHHHC------------------SSSCCCCTTTTSCCEEECTTCS--
T ss_pred cccCCccccc-------------------cchhhhhhh------------------cccccchhhCCCeEEEECCCCC--
Confidence 4432111000 001110000 001234699999 577776543
Q ss_pred CChhHHHHHHHHHHHHHHHHhcCCEEEccCCCceEEEEecCCCcccchhhhHHHHHHHhhhhccCCccEEeccchHHHHH
Q 001083 819 SPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCL 898 (1160)
Q Consensus 819 ~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~IVt~~Wl~eci 898 (1160)
.. .+.|..+|+.+||+++.++..++++|.+... + ......+|+++||.+||
T Consensus 134 -~~--------~~~L~~lI~~~GG~v~~~~~~~~iiI~~~~~------~--------------~~~~~~~V~p~Wi~DsI 184 (199)
T 3u3z_A 134 -PP--------VAKLCELVHLCGGRVSQVPRQASIVIGPYSG------K--------------KKATVKYLSEKWVLDSI 184 (199)
T ss_dssp -SC--------HHHHHHHHHHTTCCBCSSGGGCSEEESCCCS------C--------------CCTTCEEECHHHHHHHH
T ss_pred -CC--------HHHHHHHHHHcCCEEeccCCCCEEEEeCCch------h--------------ccCCCcEEChhHHHHHH
Confidence 12 3578999999999999999877766543210 0 12456899999999999
Q ss_pred HcCCccCCCCCCCC
Q 001083 899 AKEQKSEEYEYSLK 912 (1160)
Q Consensus 899 ~~~~~v~Ee~Y~v~ 912 (1160)
.+++++|.++|.+.
T Consensus 185 ~~~~llp~~~Y~~~ 198 (199)
T 3u3z_A 185 TQHKVCAPENYLLS 198 (199)
T ss_dssp HHTSCCCGGGGBCC
T ss_pred HcCCcCChHhccCC
Confidence 99999999999875
No 22
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=99.73 E-value=2.9e-17 Score=179.61 Aligned_cols=204 Identities=18% Similarity=0.228 Sum_probs=132.7
Q ss_pred CcccCeEEEEEcC--CCCCChHHHHHHHHHcCCEEEec--------CC-C-----------------CceEEEEec-CCC
Q 001083 656 SIFSDMVFYFVNV--PPAYSLDSLHKMVVENGGTFSMN--------LN-N-----------------SVTHCVAAD-NKG 706 (1160)
Q Consensus 656 ~lF~G~~F~vv~~--~~~~~k~eL~klI~~~GG~~v~n--------~~-~-----------------~~Th~Ia~~-~~~ 706 (1160)
++|+||.|||++. .....+++|+++|.+|||+++.+ .. . ..||+|+.. ..+
T Consensus 1 ~lF~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt 80 (241)
T 2vxb_A 1 LIFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRK 80 (241)
T ss_dssp CTTTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCC
T ss_pred CCCCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCc
Confidence 4899999999877 45678999999999999999886 11 0 137777643 247
Q ss_pred hhhHhhhcCC-CeeecchHHHHHhcCccCCCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCc
Q 001083 707 LKYEAAKRRG-DVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDP 785 (1160)
Q Consensus 707 ~K~~~a~~~~-~VV~p~WV~dCi~~~~lLp~~p~~~l~~s~~t~~~~~~~~D~~gDSy~~~~~~~~L~~ll~~i~~~~~~ 785 (1160)
.||..+...+ |||+|+||.||+++++++|+++ |++.........- ..-++-..|.... .+
T Consensus 81 ~K~~~ala~gipiV~~~Wi~dc~~~~~~~~~~~-ylL~~~~s~~~~~--~~~~~~~~~~~~~---~l------------- 141 (241)
T 2vxb_A 81 VKYLEALAFNIPCVHPQFIKQCLKMNRVVDFSP-YLLASGYSHRLDC--TLSQRIEPFDTTD---SL------------- 141 (241)
T ss_dssp HHHHHHHHHTCCEECTHHHHHHHHHTSCCCSGG-GBBEEEEETTTTE--EEECCCCCCCTTS---CH-------------
T ss_pred HHHHHHHHcCCCEecHHHHHHHHHcCCcCChhh-ccCCCCcchhccc--hhhccccCCChhh---HH-------------
Confidence 7998887777 9999999999999999999998 5665443221100 0000000111000 01
Q ss_pred chhhHHhhhcCCCCCCccCCCeEEEEccCCCCCCCh---hHHHHHHHHHHHHHHHHhcCCEE--EccCC-CceEEEEecC
Q 001083 786 KTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPD---WEVLLGLALRRLKLEISFHGGKV--CNNLA-NATHVVVLSV 859 (1160)
Q Consensus 786 ~~i~~l~~~~~~~~~~~lF~gc~~yl~~~~~~~~~d---~~~i~~~~~~~l~~~I~~~GG~v--~~~ls-~vTHVVV~~~ 859 (1160)
++.+. .+..||.|++||+....... .. ...-.+..++.+..+++++||++ +..++ ..+|+|+...
T Consensus 142 --~~~~~------~~~~Lf~g~~i~~~~~~~~~-~~~~~~~~~~g~~~~~~~~i~~~~Ga~~~~v~~~~~~~~d~v~~~~ 212 (241)
T 2vxb_A 142 --YDRLL------ARKGPLFGKKILFIIPEAKS-WQKKIENTEQGQKALAHVYHALALGADVEIRPNVAHLECDLILTMD 212 (241)
T ss_dssp --HHHHH------HCCCTTTTCEEEECCCC-------------CHHHHHHHHHHHHHTTCEEECCSCCSSCCCSEEECSS
T ss_pred --HHHHh------hcCcCCCCcEEEEEeCCCcc-cccccccccccchHHHHHHHHHHcCCceecccccccCCccEEEECC
Confidence 11111 13568999999997532100 00 00000123478899999999999 54554 3678888643
Q ss_pred CCcccchhhhHHHHHHHhhhhccCCccEEeccchHHHHHHcCCccC
Q 001083 860 LGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSE 905 (1160)
Q Consensus 860 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~IVt~~Wl~eci~~~~~v~ 905 (1160)
. . . .....++||+++||.+|+..|++++
T Consensus 213 ~--~--~--------------~~~~~~~iV~~eWv~~~i~~g~~l~ 240 (241)
T 2vxb_A 213 G--N--I--------------VDETNCPVVDPEWIVECLISQSDIS 240 (241)
T ss_dssp S--C--C--------------CSSCSSCEECHHHHHHHHHHTSCTT
T ss_pred c--c--c--------------cccCCCCEecHHHHHHHHHhceecC
Confidence 1 1 0 1246799999999999999999886
No 23
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=99.70 E-value=1e-16 Score=171.79 Aligned_cols=181 Identities=16% Similarity=0.236 Sum_probs=130.1
Q ss_pred CeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEec---CCChhhHhhhcCC-CeeecchHHHHHhcCccCC
Q 001083 660 DMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAAD---NKGLKYEAAKRRG-DVIHYSWVLDCCSQKKLLQ 735 (1160)
Q Consensus 660 G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~~~~~Th~Ia~~---~~~~K~~~a~~~~-~VV~p~WV~dCi~~~~lLp 735 (1160)
++.||+.+. ....+..|.+++..+||+++.+++..+||+|+.. ..+.||..+...+ .||+++||.+|+++|+++|
T Consensus 2 ~~vi~~sg~-~~~~~~~l~~~~~~~G~~~~~~~~~~~THlV~~~~~~~rt~K~l~a~~~g~~IV~~~Wl~~c~~~~~~~~ 80 (210)
T 2nte_A 2 PLVLIGSGL-SSEQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRRKVCEQ 80 (210)
T ss_dssp CCEEEESSC-CHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESSSSCCCSHHHHHHHHTTCEEEETHHHHHHHHHTSCCC
T ss_pred CEEEEECCC-CHHHHHHHHHHHHHcCCEEeCCCCCCCeEEEEcCCCcchHHHHHHHHhcCCEEecHHHHHHHHHcCCcCC
Confidence 567776543 3456789999999999999999988899999976 5788998888887 9999999999999999999
Q ss_pred CCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhhHHhhhcCCCCCCccCCCeEEEEccCC
Q 001083 736 LQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHST 815 (1160)
Q Consensus 736 ~~p~~~l~~s~~t~~~~~~~~D~~gDSy~~~~~~~~L~~ll~~i~~~~~~~~i~~l~~~~~~~~~~~lF~gc~~yl~~~~ 815 (1160)
.++|.+-. .+ .+. .+ . +.+ ....+|.||.||+++..
T Consensus 81 e~~y~~~~-~~-~~~--------------------r~----~--------------~~~----~~~~lF~g~~~~l~~~~ 116 (210)
T 2nte_A 81 EEKYEIPE-GP-RRS--------------------RL----N--------------REQ----LLPKLFDGCYFYLWGTF 116 (210)
T ss_dssp GGGTBCTT-HH-HHH--------------------HH----H--------------HHT----TCCCTTTTCEEEECSCC
T ss_pred hhhccCCC-CC-hhh--------------------hh----c--------------ccc----ccccccCceEEEEeccC
Confidence 88764321 10 000 00 0 000 12458999999999732
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHhcCCEEEccC------------------------CCceEEEEecCCCcccchhhhHH
Q 001083 816 EPLSPDWEVLLGLALRRLKLEISFHGGKVCNNL------------------------ANATHVVVLSVLGYDVNFNSLTE 871 (1160)
Q Consensus 816 ~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~l------------------------s~vTHVVV~~~~~~~~~~~~l~~ 871 (1160)
. ... ++.|..+|+.+||+++... ..|||.||..+. .......
T Consensus 117 ~--~~~--------~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~-~~~~~~~--- 182 (210)
T 2nte_A 117 K--HHP--------KDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDL-CNYHPER--- 182 (210)
T ss_dssp S--SSC--------HHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSC-SSCCCSC---
T ss_pred C--CCC--------HHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEeccc-cccCHHH---
Confidence 1 111 4688999999999998621 137899887643 1100000
Q ss_pred HHHHHhhhhccCCccEEeccchHHHHHHcCCccCCCC
Q 001083 872 SFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYE 908 (1160)
Q Consensus 872 ~l~~~~~~~~~~~~~~IVt~~Wl~eci~~~~~v~Ee~ 908 (1160)
....++++|+++||.+||..++++|.++
T Consensus 183 ---------~~~~~v~~V~~~Wl~dcI~~~~llp~~~ 210 (210)
T 2nte_A 183 ---------VRQGKVWKAPSSWFIDCVMSFELLPLDS 210 (210)
T ss_dssp ---------SEETTEEEEEHHHHHHHHHHTSCCCSCC
T ss_pred ---------HhccCcccccHHHHHHHHHhCeeccCCC
Confidence 1135678999999999999999998753
No 24
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=99.69 E-value=9.9e-17 Score=171.88 Aligned_cols=194 Identities=18% Similarity=0.269 Sum_probs=134.4
Q ss_pred CcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecC-CChhhHhhhcCC-CeeecchHHHHHhcCcc
Q 001083 656 SIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADN-KGLKYEAAKRRG-DVIHYSWVLDCCSQKKL 733 (1160)
Q Consensus 656 ~lF~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~~~~~Th~Ia~~~-~~~K~~~a~~~~-~VV~p~WV~dCi~~~~l 733 (1160)
....++.||+.+.. .++++++|..+||.++.+++. +||+|+... .|.||..++..+ +||+++||.+|++++++
T Consensus 8 ~~~~~~~v~~sG~~----~~~~~~~i~~lGg~~~~~~~~-~THlI~~~~~rt~K~l~a~~~g~~IV~~~Wl~~~~~~~~~ 82 (209)
T 2etx_A 8 QESTAPKVLFTGVV----DARGERAVLALGGSLAGSAAE-ASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGFF 82 (209)
T ss_dssp ----CCEEEECSSC----CHHHHHHHHHTTCEECSSTTT-CSEEECSSCCCSHHHHHHHHHTCCEECTHHHHHHHHHTSC
T ss_pred ccCCCcEEEEeCCC----cHHHHHHHHHCCCEEeCCCCC-ceEEEECCCCCCHHHHHHHhcCCccccHHHHHHHHHcCCC
Confidence 44566777765433 256799999999999999874 999998643 689999888888 99999999999999999
Q ss_pred CCCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhhHHhhhcCCCCCCccCCCeEEEEcc
Q 001083 734 LQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYH 813 (1160)
Q Consensus 734 Lp~~p~~~l~~s~~t~~~~~~~~D~~gDSy~~~~~~~~L~~ll~~i~~~~~~~~i~~l~~~~~~~~~~~lF~gc~~yl~~ 813 (1160)
+|.++| ++. .+..... ||- + +...+.+. + ...+|.|+.||+.+
T Consensus 83 l~e~~y-~~~-~~~~~~~-------~~~------~---l~~~~~~a------------~-------~~~lF~g~~~~~~~ 125 (209)
T 2etx_A 83 LPPDEY-VVT-DPEQEKN-------FGF------S---LQDALSRA------------R-------ERRLLEGYEIYVTP 125 (209)
T ss_dssp CCSGGG-BCC-CHHHHHH-------TTC------C---HHHHHHHH------------H-------HSCTTTTCEEEECT
T ss_pred CChhhc-ccc-Chhhhhh-------cCC------C---HHHHHhhh------------h-------hCCCcCCcEEEEeC
Confidence 999875 442 2211111 111 1 12112111 0 12589999999998
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCCC---ceEEEEecCCCcccchhhhHHHHHHHhhhhccCCccEEec
Q 001083 814 STEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN---ATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVR 890 (1160)
Q Consensus 814 ~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~---vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~IVt 890 (1160)
+.. .. .+.|..+|+.+||++...+.. -+|||+.... +...++... ...++||+
T Consensus 126 ~~~---~~--------~~~l~~li~~~GG~v~~~~~~~~~~~~ivI~~~~----d~~~~~~~~---------~~~i~vvs 181 (209)
T 2etx_A 126 GVQ---PP--------PPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQ----DFPHCSIPL---------RVGLPLLS 181 (209)
T ss_dssp TCS---SC--------HHHHHHHHHHTTCEECSSCCCSCCTTEEEECCGG----GGGGCHHHH---------HHTCCEEC
T ss_pred CCC---CC--------HHHHHHHHHHCCCEEECCCCCCCCCceEEEECcc----cHHHHHHHH---------HCCCeEEc
Confidence 642 12 357889999999999998874 3788885432 222222211 13578999
Q ss_pred cchHHHHHHcCCccCCCCCCCCCCCC
Q 001083 891 SQWLEDCLAKEQKSEEYEYSLKPTGM 916 (1160)
Q Consensus 891 ~~Wl~eci~~~~~v~Ee~Y~v~~~~~ 916 (1160)
.+||.+||..+++ +++.|.+.++.+
T Consensus 182 ~eWi~~sI~~q~l-d~e~y~l~~~~~ 206 (209)
T 2etx_A 182 PEFLLTGVLKQEA-KPEAFVLSPLEM 206 (209)
T ss_dssp THHHHHHHHHTCC-CGGGGBCCTTC-
T ss_pred HHHHHHHHHhccc-ChHHheecCCCc
Confidence 9999999998775 999999988874
No 25
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.51 E-value=2.2e-14 Score=134.68 Aligned_cols=88 Identities=24% Similarity=0.416 Sum_probs=75.0
Q ss_pred CCCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCC-CCceEEEEecCCChhhHhhhcCCCeeecchHHHHHhcC
Q 001083 653 GETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLN-NSVTHCVAADNKGLKYEAAKRRGDVIHYSWVLDCCSQK 731 (1160)
Q Consensus 653 ~~s~lF~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~~-~~~Th~Ia~~~~~~K~~~a~~~~~VV~p~WV~dCi~~~ 731 (1160)
..+.+|+|+.||+ ++....++++|+++|.+|||+++.+++ ..+||+|+....+.|++.+. ..+||+|+||+||+++|
T Consensus 8 ~~~~lF~g~~~~i-sg~~~~~~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~~~-~~~iV~p~Wl~dci~~~ 85 (97)
T 2ebw_A 8 TSSTIFSGVAIYV-NGYTDPSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAG 85 (97)
T ss_dssp CCCCTTTTCEEEE-CSSCSSCHHHHHHHHHHTTCEECSSCCSSSCCEEECSCCCTTHHHHTS-SSCCBCTHHHHHHHHHT
T ss_pred CCCCCCCCeEEEE-eCCCcccHHHHHHHHHHcCCEEeeecCCCCCEEEEecCCChHHHHHhc-CCCEeChHHHHHHHHcC
Confidence 4568999999996 454556799999999999999988665 57999998877778888875 34999999999999999
Q ss_pred ccCCCCccccc
Q 001083 732 KLLQLQPKYYL 742 (1160)
Q Consensus 732 ~lLp~~p~~~l 742 (1160)
+++|++||.++
T Consensus 86 ~~l~~~~Y~l~ 96 (97)
T 2ebw_A 86 RLLSYIPYQLY 96 (97)
T ss_dssp SCCCSGGGBSC
T ss_pred CccCchHcEec
Confidence 99999998654
No 26
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=99.48 E-value=9.5e-14 Score=151.15 Aligned_cols=211 Identities=15% Similarity=0.155 Sum_probs=135.4
Q ss_pred cCeEEEEEcCCCCCChHHHHHHHHHcCCEEEe--cCCCCceEEEEecC-CChhhHhhhcCC-CeeecchHHHHHhcCccC
Q 001083 659 SDMVFYFVNVPPAYSLDSLHKMVVENGGTFSM--NLNNSVTHCVAADN-KGLKYEAAKRRG-DVIHYSWVLDCCSQKKLL 734 (1160)
Q Consensus 659 ~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~--n~~~~~Th~Ia~~~-~~~K~~~a~~~~-~VV~p~WV~dCi~~~~lL 734 (1160)
++..|++.+.. ...+.++.++|..+||+++. +++..+||+|+... .|.||-.++..| .||+++||.+|+++|+.+
T Consensus 8 ~~~~~~~Sg~~-~~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~RT~K~l~aia~G~wIvs~~wl~~s~~~g~~l 86 (235)
T 3al2_A 8 KQYIFQLSSLN-PQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRTAGHFV 86 (235)
T ss_dssp CCCEEEEESCC-HHHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCCCSHHHHHHHHTTCEEECTHHHHHHHHHTSCC
T ss_pred CCEEEEEcCCC-HHHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCCCCHHHHHHHHcCCcCccHHHHHHHHHcCCCC
Confidence 56778876443 45678899999999999986 45678999999765 589999888888 999999999999999999
Q ss_pred CCCcccccccChhhhhhhhhcccccCCCcccCCChh--HHHHHhhccCCCCCcchhhHHhhhcCCCCCCccCCCeEEEEc
Q 001083 735 QLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLA--DIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFY 812 (1160)
Q Consensus 735 p~~p~~~l~~s~~t~~~~~~~~D~~gDSy~~~~~~~--~L~~ll~~i~~~~~~~~i~~l~~~~~~~~~~~lF~gc~~yl~ 812 (1160)
|.++|.+.. +..... .. .++.. .+.....+- . ..+...-.......+|.|+.|||+
T Consensus 87 ~E~~ye~~~--~~~~d~----~~--------~~~~~~~~l~~a~~r~-------R-~~l~~~~~~g~~~~lF~g~~v~l~ 144 (235)
T 3al2_A 87 QEEDYEWGS--SSILDV----LT--------GINVQQRRLALAAMRW-------R-KKIQQRQESGIVEGAFSGWKVILH 144 (235)
T ss_dssp CSGGGBTTS--HHHHTT----CT--------TSCHHHHHHHHHHHHH-------H-HHHHHHHTTTCCSSTTTTCEEEEE
T ss_pred ChhceeecC--cchhcc----cc--------CCChhhhHHHHHHHHH-------H-HHHHhcccccccCCCCCCcEEEEe
Confidence 988764321 100000 00 00111 111000000 0 000000000001368999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-----CceEEEEecCCCcccch-hhhHHHHHHHhhhhccCCcc
Q 001083 813 HSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-----NATHVVVLSVLGYDVNF-NSLTESFTAREKHLLWNKKL 886 (1160)
Q Consensus 813 ~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-----~vTHVVV~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~ 886 (1160)
... ...+.+.++|+++||+|..... +.||++|+...-...+. ..+++ + ....+
T Consensus 145 ~~~------------~~~~~l~~ii~agGg~vl~~~~~~~~~~~t~~~vd~~~~~~~~~~~~~~~-~--------~~~~i 203 (235)
T 3al2_A 145 VDQ------------SREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAE-A--------AAQNV 203 (235)
T ss_dssp CCH------------HHHHHHHHHHHHTTCEECSSCCGGGGGGCSEEEECC--------CCCHHH-H--------HHTTC
T ss_pred cCC------------CcHHHHHHHHHcCCcEEecCCCCCccccCceEEEecccCCccchhHHHHH-H--------HHcCC
Confidence 731 1246789999999999987643 37999886421000000 01111 1 12358
Q ss_pred EEeccchHHHHHHcCCccCCCCCCCCC
Q 001083 887 HVVRSQWLEDCLAKEQKSEEYEYSLKP 913 (1160)
Q Consensus 887 ~IVt~~Wl~eci~~~~~v~Ee~Y~v~~ 913 (1160)
.||+.+||.+|+-.+...+.+.|.++.
T Consensus 204 ~~v~~ewlld~i~~~~~~~~~~y~l~~ 230 (235)
T 3al2_A 204 YCLRTEYIADYLMQESPPHVENYCLPE 230 (235)
T ss_dssp EEEETHHHHHHHHCSSCCCHHHHBCGG
T ss_pred cEEcHHHHHHHHhcCCCCChhheEccc
Confidence 999999999999999999999998764
No 27
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=99.48 E-value=1.8e-13 Score=147.51 Aligned_cols=191 Identities=16% Similarity=0.238 Sum_probs=130.5
Q ss_pred cccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEec-CCChhhHhhhcCC-CeeecchHHHHHhcCccC
Q 001083 657 IFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAAD-NKGLKYEAAKRRG-DVIHYSWVLDCCSQKKLL 734 (1160)
Q Consensus 657 lF~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~~~~~Th~Ia~~-~~~~K~~~a~~~~-~VV~p~WV~dCi~~~~lL 734 (1160)
.+.|+.||+.+.. ...++++.++|..+||+++.+. ..+||+|+.. ..+.||..+...+ +||+|+||.+|+++++.+
T Consensus 13 ~~~~~~i~~SG~~-~~~~~~l~~~i~~lGg~v~~~~-~~~THLI~~~~~rT~K~l~A~~~g~~IVs~~Wl~~c~~~~~~l 90 (219)
T 3sqd_A 13 PELTPFVLFTGFE-PVQVQQYIKKLYILGGEVAESA-QKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQKFI 90 (219)
T ss_dssp GGGCCEEEECSCC-HHHHHHHHHHHHHTTCEECSSG-GGCSEEECSSCCCCHHHHHHTTTCSEEECHHHHHHHHHHTSCC
T ss_pred CCCCeEEEEeCCC-hHHHHHHHHHHHHCCCEEeCCC-CCceEEEECCCCCCHHHHHHHHcCCCEecHHHHHHHHHcCCCC
Confidence 5678889986543 3456789999999999998876 5799999865 3678999998888 999999999999999999
Q ss_pred CCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhhHHhhhcCCCCCCccCCCeEEEEccC
Q 001083 735 QLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHS 814 (1160)
Q Consensus 735 p~~p~~~l~~s~~t~~~~~~~~D~~gDSy~~~~~~~~L~~ll~~i~~~~~~~~i~~l~~~~~~~~~~~lF~gc~~yl~~~ 814 (1160)
|.++|. +.... .. ..||-+ +...+.+ . ....+|.|+.||+.+.
T Consensus 91 ~e~~y~-l~d~~-~e-------~~~~~~---------l~~~l~r--------------a-----~~~~LF~G~~f~it~~ 133 (219)
T 3sqd_A 91 DEQNYI-LRDAE-AE-------VLFSFS---------LEESLKR--------------A-----HVSPLFKAKYFYITPG 133 (219)
T ss_dssp CSGGGB-CCCHH-HH-------HHTTCC---------HHHHHHH--------------H-----HHSCTTTTEEEEECTT
T ss_pred ChHhcc-CCCch-hh-------hhcCCC---------hHHHhhh--------------h-----ccccccCCcEEEEeCC
Confidence 988763 32111 00 011110 1111110 0 0235899999999985
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCCC-------------ceEEEEecCCCcccchhhhHHHHHHHhhhhc
Q 001083 815 TEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN-------------ATHVVVLSVLGYDVNFNSLTESFTAREKHLL 881 (1160)
Q Consensus 815 ~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~-------------vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~~ 881 (1160)
.. .. .+.|..+|+.+||++...+.. ...||+.... +....+...
T Consensus 134 ~~---~~--------~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~~~~~~ivis~~~----d~~~~~~~~-------- 190 (219)
T 3sqd_A 134 IC---PS--------LSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISCEN----DLHLCREYF-------- 190 (219)
T ss_dssp CS---SC--------HHHHHHHHHHTTCEEESSCCCHHHHHHHHHCTTSCEEEEEECGG----GGGGGHHHH--------
T ss_pred CC---CC--------HHHHHHHHHHCCCEEECCCCchHHhhhhhcccCCCCEEEEeccc----HHHHHHHHH--------
Confidence 32 12 457899999999999998753 2345554322 233223222
Q ss_pred cCCccEEeccchHHHHHHcCCccCCCCCCC
Q 001083 882 WNKKLHVVRSQWLEDCLAKEQKSEEYEYSL 911 (1160)
Q Consensus 882 ~~~~~~IVt~~Wl~eci~~~~~v~Ee~Y~v 911 (1160)
...+.|++.+||..||-.+.+ +-+.|.+
T Consensus 191 -~~~~~v~s~E~il~~Il~q~l-d~~~~~~ 218 (219)
T 3sqd_A 191 -ARGIDVHNAEFVLTGVLTQTL-DYESYKF 218 (219)
T ss_dssp -HTTCCCEETHHHHHHHHHTCC-CTTTSBC
T ss_pred -HCCCcEEeHHHHHHHHHheee-cchhccc
Confidence 135689999999999996654 6666754
No 28
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.45 E-value=1.4e-13 Score=136.59 Aligned_cols=94 Identities=27% Similarity=0.375 Sum_probs=73.7
Q ss_pred CCCCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHH
Q 001083 798 QDKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAR 876 (1160)
Q Consensus 798 ~~~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~ 876 (1160)
..+..+|+||+|||+|+.. ..+..|.++|+.+||++++.++ .|||||+.... ..+ ++.+.
T Consensus 35 ~~~~~lF~g~~i~i~G~~~-----------~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~~---~~~---~~~~~-- 95 (132)
T 1wf6_A 35 QAPEDLLDGCRIYLCGFSG-----------RKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYD---DEL---KQFWN-- 95 (132)
T ss_dssp CCCTTTTTTCEEEEESCCS-----------HHHHHHHHHHHHTTCEEESSCCSSCCEEEESSCC---SHH---HHHHH--
T ss_pred cccccccCCEEEEEECCCh-----------HHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCch---HHH---HHHHH--
Confidence 4567899999999999852 2467899999999999999998 59999997531 122 22221
Q ss_pred hhhhccCCccEEeccchHHHHHHcCCccCCCCCCCCCC
Q 001083 877 EKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPT 914 (1160)
Q Consensus 877 ~~~~~~~~~~~IVt~~Wl~eci~~~~~v~Ee~Y~v~~~ 914 (1160)
.....++||+++||++|+++++++||+.|.+..+
T Consensus 96 ----~~~~~~~iV~~~Wv~dsi~~~~ll~e~~Y~~~~~ 129 (132)
T 1wf6_A 96 ----KSAHRPHVVGAKWLLECFSKGYMLSEEPYIHSGP 129 (132)
T ss_dssp ----HSCCCCCEEEHHHHHHHHHHSSCCCSGGGBCCCS
T ss_pred ----hhCCCCeEechHHHHHHHHcCCcCCHhhccCCCC
Confidence 1135689999999999999999999999977543
No 29
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=4.6e-13 Score=124.03 Aligned_cols=84 Identities=29% Similarity=0.397 Sum_probs=69.7
Q ss_pred CCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCC--CCceEEEEecCCChhhHhhhcCC-CeeecchHHHHHhc
Q 001083 654 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLN--NSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQ 730 (1160)
Q Consensus 654 ~s~lF~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~~--~~~Th~Ia~~~~~~K~~~a~~~~-~VV~p~WV~dCi~~ 730 (1160)
.+.+|+|+.|||.+ ....++.+|+++|..|||+++.+++ ..+||+|+....+.|+..+ .+ +||+|+||.||+++
T Consensus 4 ~~~~f~g~~~~i~g-~~~~~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~~K~~~~--~~~~iV~~~Wi~dci~~ 80 (92)
T 4id3_A 4 SSKIFKNCVIYING-YTKPGRLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPLKKRIEF--ANYKVVSPDWIVDSVKE 80 (92)
T ss_dssp --CTTTTCEEEECS-CCSSCHHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCHHHHHHT--TTSCEECTHHHHHHHHH
T ss_pred cccccCCEEEEEeC-CCCcCHHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCHHHHHHc--CCCCEEcccHHHHHHHc
Confidence 46799999999864 3345799999999999999999987 6899999877666665443 34 99999999999999
Q ss_pred CccCCCCccc
Q 001083 731 KKLLQLQPKY 740 (1160)
Q Consensus 731 ~~lLp~~p~~ 740 (1160)
++++|.++|.
T Consensus 81 ~~~l~e~~Y~ 90 (92)
T 4id3_A 81 ARLLPWQNYS 90 (92)
T ss_dssp TSCCCGGGGB
T ss_pred CCcCChhhcc
Confidence 9999999863
No 30
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.36 E-value=1.5e-12 Score=123.08 Aligned_cols=93 Identities=20% Similarity=0.354 Sum_probs=74.5
Q ss_pred CccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhhh
Q 001083 801 WSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKH 879 (1160)
Q Consensus 801 ~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~ 879 (1160)
..||+||+|||++..+ .. ++..|.++|.++||++.+.++ +|||||+..+++. .++.+ +
T Consensus 5 pd~F~g~~f~l~~~~p--~~--------~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~~d~--~~~~a---~------ 63 (104)
T 3pc6_A 5 PDFFEGKHFFLYGEFP--GD--------ERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDP--NFEEA---L------ 63 (104)
T ss_dssp CCTTTTCEEEEESCCS--TT--------HHHHHHHHHHHTTCEECSSCCTTCCEEEESSCCCH--HHHHH---H------
T ss_pred chhhCCeEEEEcCCCc--HH--------HHHHHHHHHHHcCCEEEcccCCCceEEEeCCCCCh--hHHHH---h------
Confidence 4699999999999753 11 357899999999999999997 5999999876522 23221 1
Q ss_pred hccCCccEEeccchHHHHHHcCCccCCCCCCCCCCC
Q 001083 880 LLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTG 915 (1160)
Q Consensus 880 ~~~~~~~~IVt~~Wl~eci~~~~~v~Ee~Y~v~~~~ 915 (1160)
..+..+.+|+++||++|++++++||+++|.+.+..
T Consensus 64 -~~~p~~~~V~P~WI~~Ci~~~klvp~~~y~~~~~~ 98 (104)
T 3pc6_A 64 -MENPSLAFVRPRWIYSCNEKQKLLPHQLYGVVPQA 98 (104)
T ss_dssp -TTCTTCEEECHHHHHHHHHHTSCCCGGGGBCCCCG
T ss_pred -hhCCCCeEEccHHHHHHHhcCccCCcccceecchh
Confidence 23567899999999999999999999999988764
No 31
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.35 E-value=1.5e-12 Score=125.04 Aligned_cols=91 Identities=20% Similarity=0.264 Sum_probs=73.7
Q ss_pred CCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhh
Q 001083 800 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREK 878 (1160)
Q Consensus 800 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~ 878 (1160)
+..+|.||+|||.||.. .++..|+..|..+||++...++ +|||||+....+. .+..
T Consensus 18 ~~p~F~g~~Ic~sGf~~-----------~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~~--K~~~---------- 74 (112)
T 3l46_A 18 GVPPFQDCILSFLGFSD-----------EEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVK--DLPF---------- 74 (112)
T ss_dssp CCCTTTTCEECEESCCH-----------HHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTBS--SCSS----------
T ss_pred CCCccCCeEEEEeCCCH-----------HHHHHHHHHHHHcCCEECcccCCCceEEEecCCchh--hHHH----------
Confidence 45689999999999862 2467899999999999999998 5999999875422 1221
Q ss_pred hhccCCccEEeccchHHHHHHcCCccCCCCCCCCCCC
Q 001083 879 HLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTG 915 (1160)
Q Consensus 879 ~~~~~~~~~IVt~~Wl~eci~~~~~v~Ee~Y~v~~~~ 915 (1160)
.....++||+++||++|++.|.+++|..|.+..+.
T Consensus 75 --A~~~~i~IVs~eWl~dsi~~g~~ldE~~Y~~~~~~ 109 (112)
T 3l46_A 75 --EPSKKLYVVKQEWFWGSIQMDARAGETMYLYEKAN 109 (112)
T ss_dssp --CCCSSCEEEEHHHHHHHHHHTSCCCGGGSBCCC--
T ss_pred --HHHCCeeEecHHHHHHHHHcCCccChhhceeccCC
Confidence 22478999999999999999999999999996654
No 32
>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5}
Probab=99.35 E-value=8.8e-12 Score=144.44 Aligned_cols=156 Identities=18% Similarity=0.212 Sum_probs=109.2
Q ss_pred CCcEEEEEecceEEEEEEEeCCEEEEEeCCCCC--CCc-chhh-HHHHHHHhcccCceeeceeEEEEeCCCCcccccccH
Q 001083 244 GKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLD--HSE-YGHA-MSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSN 319 (1160)
Q Consensus 244 ~~~~~~E~K~DGeR~qih~~g~~v~~fSR~g~d--~t~-~~~~-l~~~l~~~~~~~~~ILDGElv~~d~~~~~~~pF~~l 319 (1160)
...|++|+|+||.|+++|+.+|.++++||++.. +|. .+|. +...+... ...++||||+++++. +|...
T Consensus 94 ~~~~vvEeKlDG~~v~l~y~~G~v~a~TRg~g~e~iT~n~i~~wip~~L~~~--~~~l~L~GEvv~~~~------~f~~~ 165 (389)
T 2vug_A 94 RGEFYVEEKVDGYNVRVVMYKGKMLGITRGGFICPFTTERIPDFVPQEFFKD--NPNLILVGEMAGPES------PYLVE 165 (389)
T ss_dssp SCEEEEEEECCSEEEEEEEETTEEEEEETTSCBCHHHHHHGGGTSCTHHHHH--CTTEEEEEEEESSSC------SSCSC
T ss_pred CCeEEEEEeecCcEEEEEEECCEEEEEeCCCCCCCCchhhhhHhHHHHHhcC--CCcEEEEEEEEecCC------hHHHh
Confidence 357999999999999999999999999999988 543 2344 22222211 567999999988652 34211
Q ss_pred HHHHHHhccCCCCCCccEEEEEEeeeecCCcccccCCHHHHHHHHHHhhccCCCcceeeccCCCCCccccCCCCCcccee
Q 001083 320 QEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLV 399 (1160)
Q Consensus 320 q~i~~~~r~~~~~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~~~~~v~~~~~~~~~~~ 399 (1160)
+......++.|++|||++.++.. -.|+.+|+++|+.+--+....+. ...
T Consensus 166 ---------n~~np~r~l~F~vFDV~~~~~g~--~~s~~er~~~L~~lG~~~vp~~~--------------------~~~ 214 (389)
T 2vug_A 166 ---------GPPYVKEDIQFFLFDVQEIKTGR--SLPVEERLKIAEEYGINHVEVFG--------------------KYT 214 (389)
T ss_dssp ---------CCTTCCSSCEEEEEEEEETTTCC--BCCHHHHHHHHHHHTCCBCCEEE--------------------EEE
T ss_pred ---------cccCcccCCEEEEEEeeccCCCC--cCCHHHHHHHHHHcCCCCCCeEE--------------------EEc
Confidence 11111234899999999886332 27899999999998433221110 112
Q ss_pred cCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEcccc
Q 001083 400 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEY 446 (1160)
Q Consensus 400 ~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKlKpeY 446 (1160)
..+.+++.++++.+...+.||||+|..+ +. .|+|++..+
T Consensus 215 ~~~~eel~~~i~~~~~~~~EGvViK~~d-------~~-~~lkyt~~~ 253 (389)
T 2vug_A 215 KDDVDELYQLIERLSKEGREGIIMKSPD-------MK-KIVKYVTPY 253 (389)
T ss_dssp GGGHHHHHHHHHHHHHTTCCEEEEECTT-------SC-CEEEEECHH
T ss_pred CCCHHHHHHHHHHhcCCCCCeEEEEECC-------hh-hhcCceecC
Confidence 2367899999999999999999999876 33 688887764
No 33
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1e-12 Score=129.88 Aligned_cols=91 Identities=20% Similarity=0.289 Sum_probs=80.0
Q ss_pred CCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhcCC-CeeecchHHHHHhcCc
Q 001083 654 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKK 732 (1160)
Q Consensus 654 ~s~lF~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~~~~~Th~Ia~~~~~~K~~~a~~~~-~VV~p~WV~dCi~~~~ 732 (1160)
...+|+|+.|||.+.. ..++.+|+++|..|||++..+++..+||+|+.+..+.||..|..++ +||+++||.||+++++
T Consensus 19 ~~~~f~g~~i~itG~~-~~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~~K~~~A~~~gi~IV~~~Wl~d~~~~~~ 97 (129)
T 2d8m_A 19 LGKILQGVVVVLSGFQ-NPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCHRMRR 97 (129)
T ss_dssp HTTTSTTEEEEEESCC-TTHHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSCHHHHHHHHHTCEEEETHHHHHHHHTTS
T ss_pred ccccCCCeEEEEeCCC-cHHHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCChHHHHHHHCCCcEecHHHHHHHHHhCC
Confidence 3568999999987554 5689999999999999999999888999999988899999998887 9999999999999999
Q ss_pred cCCCCcccccccCh
Q 001083 733 LLQLQPKYYLHLSD 746 (1160)
Q Consensus 733 lLp~~p~~~l~~s~ 746 (1160)
++|+.+| ++...+
T Consensus 98 ~l~e~~Y-~l~~~~ 110 (129)
T 2d8m_A 98 RLPSQRY-LMAGPG 110 (129)
T ss_dssp CCCGGGG-BCSSSS
T ss_pred cCChHhc-ccCCCC
Confidence 9999986 444443
No 34
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.33 E-value=2e-12 Score=124.05 Aligned_cols=90 Identities=19% Similarity=0.266 Sum_probs=72.7
Q ss_pred CCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhh
Q 001083 800 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREK 878 (1160)
Q Consensus 800 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~ 878 (1160)
+..+|.||+||++||.. .++..|..+|+.+||+++..++ +|||||+....+. .+..
T Consensus 9 ~~~~F~g~~i~~sg~~~-----------~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~~~--K~~~---------- 65 (109)
T 2cou_A 9 KVPPFQDCILSFLGFSD-----------EEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTVK--DLPF---------- 65 (109)
T ss_dssp CCCTTTTCBEEEESSCH-----------HHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTTCS--SCSS----------
T ss_pred cCCcCCCeEEEecCCCH-----------HHHHHHHHHHHHcCCEEecccCCCccEEEEeCCccH--HHHH----------
Confidence 56689999999999862 2467889999999999999887 5999999865322 1221
Q ss_pred hhccCCccEEeccchHHHHHHcCCccCCCCCCCCCC
Q 001083 879 HLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPT 914 (1160)
Q Consensus 879 ~~~~~~~~~IVt~~Wl~eci~~~~~v~Ee~Y~v~~~ 914 (1160)
.....++||+++||++|++.+++++|+.|.+...
T Consensus 66 --a~~~~i~IV~~~Wl~dsi~~g~~ldE~~Y~~~~~ 99 (109)
T 2cou_A 66 --EPSKKLFVVKQEWFWGSIQMDARAGETMYLYEKA 99 (109)
T ss_dssp --CCCTTSEEECHHHHHHHHHTTSCCCGGGTBCCCC
T ss_pred --HHHCCCeEecHHHHHHHHHcCCcCChhccCCCCC
Confidence 1246789999999999999999999999988763
No 35
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.30 E-value=1.8e-12 Score=123.86 Aligned_cols=89 Identities=18% Similarity=0.352 Sum_probs=75.3
Q ss_pred cCCCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEE---ecCCChhhHhhhcCC-CeeecchHHHH
Q 001083 652 KGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVA---ADNKGLKYEAAKRRG-DVIHYSWVLDC 727 (1160)
Q Consensus 652 ~~~s~lF~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~~~~~Th~Ia---~~~~~~K~~~a~~~~-~VV~p~WV~dC 727 (1160)
...+.+|+|+.|||.+... .++.+|+++|..+||++...++..+||+|+ ....+.||+.|...+ +||+++||.||
T Consensus 10 ~~~~~~l~g~~i~isg~~~-~~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~~Wl~~c 88 (107)
T 3l3e_A 10 EEAPKPLHKVVVCVSKKLS-KKQSELNGIAASLGADYRRSFDETVTHFIYQGRPNDTNREYKSVKERGVHIVSEHWLLDC 88 (107)
T ss_dssp ----CTTTTCEEEECGGGG-GGHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTCCCHHHHHHHHTTCEEECHHHHHHH
T ss_pred ccccCCCCCeEEEEeCCCh-HhHHHHHHHHHHcCCEEeccccCCceEEEecCCCCCCCHHHHHHHHCCCeEecHHHHHHH
Confidence 3456899999999875543 689999999999999999999888999998 344578999999888 99999999999
Q ss_pred HhcCccCCCCcccc
Q 001083 728 CSQKKLLQLQPKYY 741 (1160)
Q Consensus 728 i~~~~lLp~~p~~~ 741 (1160)
+++++.+|.++|.+
T Consensus 89 ~~~~~~l~e~~Y~~ 102 (107)
T 3l3e_A 89 AQECKHLPESLYPH 102 (107)
T ss_dssp HHHTSCCCGGGCCT
T ss_pred HHhCCCCchhhCCC
Confidence 99999999887743
No 36
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=5e-12 Score=117.00 Aligned_cols=86 Identities=27% Similarity=0.389 Sum_probs=67.6
Q ss_pred CCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC---CceEEEEecCCCcccchhhhHHHHHHH
Q 001083 800 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA---NATHVVVLSVLGYDVNFNSLTESFTAR 876 (1160)
Q Consensus 800 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls---~vTHVVV~~~~~~~~~~~~l~~~l~~~ 876 (1160)
+..+|+||+|||+|+.. ++ +..|..+|..+||+++..++ +|||||+....+ ..+.
T Consensus 4 ~~~~f~g~~~~i~g~~~---~~--------~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~-----~K~~------ 61 (92)
T 4id3_A 4 SSKIFKNCVIYINGYTK---PG--------RLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPL-----KKRI------ 61 (92)
T ss_dssp --CTTTTCEEEECSCCS---SC--------HHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCH-----HHHH------
T ss_pred cccccCCEEEEEeCCCC---cC--------HHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCH-----HHHH------
Confidence 45689999999999753 12 35788999999999999997 499999976431 1111
Q ss_pred hhhhccCCccEEeccchHHHHHHcCCccCCCCCCCC
Q 001083 877 EKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLK 912 (1160)
Q Consensus 877 ~~~~~~~~~~~IVt~~Wl~eci~~~~~v~Ee~Y~v~ 912 (1160)
....++||+++||.+|+++++++||++|.+.
T Consensus 62 -----~~~~~~iV~~~Wi~dci~~~~~l~e~~Y~l~ 92 (92)
T 4id3_A 62 -----EFANYKVVSPDWIVDSVKEARLLPWQNYSLT 92 (92)
T ss_dssp -----HTTTSCEECTHHHHHHHHHTSCCCGGGGBCC
T ss_pred -----HcCCCCEEcccHHHHHHHcCCcCChhhcccC
Confidence 1246899999999999999999999999873
No 37
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.28 E-value=5.4e-12 Score=119.33 Aligned_cols=87 Identities=20% Similarity=0.309 Sum_probs=75.0
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhcCC---CeeecchHHHHHhcC
Q 001083 655 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG---DVIHYSWVLDCCSQK 731 (1160)
Q Consensus 655 s~lF~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~~~~~Th~Ia~~~~~~K~~~a~~~~---~VV~p~WV~dCi~~~ 731 (1160)
-++|+|++||+.+..+...+..|+++|..+||.+....+.++||+|+....+.+++.+.... .+|+|+||++|++++
T Consensus 5 pd~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~~d~~~~~a~~~~p~~~~V~P~WI~~Ci~~~ 84 (104)
T 3pc6_A 5 PDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEALMENPSLAFVRPRWIYSCNEKQ 84 (104)
T ss_dssp CCTTTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSSCCTTCCEEEESSCCCHHHHHHHTTCTTCEEECHHHHHHHHHHT
T ss_pred chhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEcccCCCceEEEeCCCCChhHHHHhhhCCCCeEEccHHHHHHHhcC
Confidence 46999999998765545678899999999999988888888999999887788888776543 899999999999999
Q ss_pred ccCCCCcccc
Q 001083 732 KLLQLQPKYY 741 (1160)
Q Consensus 732 ~lLp~~p~~~ 741 (1160)
+++|+++|-+
T Consensus 85 klvp~~~y~~ 94 (104)
T 3pc6_A 85 KLLPHQLYGV 94 (104)
T ss_dssp SCCCGGGGBC
T ss_pred ccCCccccee
Confidence 9999998744
No 38
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.28 E-value=1.7e-12 Score=124.49 Aligned_cols=85 Identities=14% Similarity=0.158 Sum_probs=76.1
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhcCC-CeeecchHHHHHhcCcc
Q 001083 655 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKKL 733 (1160)
Q Consensus 655 s~lF~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~~~~~Th~Ia~~~~~~K~~~a~~~~-~VV~p~WV~dCi~~~~l 733 (1160)
.++|+||.||+.+ .....+.+|+++|.+|||++...++..+||+|+....+.||+.+.+++ +||+++||.||+++|..
T Consensus 19 ~p~F~g~~Ic~sG-f~~~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~~K~~~A~~~~i~IVs~eWl~dsi~~g~~ 97 (112)
T 3l46_A 19 VPPFQDCILSFLG-FSDEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVKDLPFEPSKKLYVVKQEWFWGSIQMDAR 97 (112)
T ss_dssp CCTTTTCEECEES-CCHHHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTBSSCSSCCCSSCEEEEHHHHHHHHHHTSC
T ss_pred CCccCCeEEEEeC-CCHHHHHHHHHHHHHcCCEECcccCCCceEEEecCCchhhHHHHHHCCeeEecHHHHHHHHHcCCc
Confidence 4699999999975 445678999999999999999999889999999888888899998888 99999999999999999
Q ss_pred CCCCccc
Q 001083 734 LQLQPKY 740 (1160)
Q Consensus 734 Lp~~p~~ 740 (1160)
++...|.
T Consensus 98 ldE~~Y~ 104 (112)
T 3l46_A 98 AGETMYL 104 (112)
T ss_dssp CCGGGSB
T ss_pred cChhhce
Confidence 9987653
No 39
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=3.8e-12 Score=119.82 Aligned_cols=81 Identities=19% Similarity=0.366 Sum_probs=63.8
Q ss_pred CCCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecC-----------CCCceEEEEecCCChhhHhhhcCCCeeec
Q 001083 653 GETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNL-----------NNSVTHCVAADNKGLKYEAAKRRGDVIHY 721 (1160)
Q Consensus 653 ~~s~lF~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~-----------~~~~Th~Ia~~~~~~K~~~a~~~~~VV~p 721 (1160)
..++||+|++|||.. ..+++.|+.+|..|||+++.+. ...+||+|+ ++.+.+... ...++|+|
T Consensus 8 ~~~~LF~g~~F~i~~---e~p~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~-drp~~~~~~--~~r~~VqP 81 (100)
T 2ep8_A 8 KHKKLFEGLKFFLNR---EVPREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIV-DRPGQQTSV--IGRCYVQP 81 (100)
T ss_dssp CSCCTTSSCEEECCS---SSCHHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEEC-SCTTTSCCB--TTBEEECT
T ss_pred chHHHcCCcEEEEec---CCCHHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEe-cccchhhhc--CCCeEEcc
Confidence 457899999999854 3578999999999999999863 346899986 443432111 11299999
Q ss_pred chHHHHHhcCccCCCCcc
Q 001083 722 SWVLDCCSQKKLLQLQPK 739 (1160)
Q Consensus 722 ~WV~dCi~~~~lLp~~p~ 739 (1160)
+||+||++++++||+++|
T Consensus 82 qWV~Dcin~~~lLp~~~Y 99 (100)
T 2ep8_A 82 QWVFDSVNARLLLPVAEY 99 (100)
T ss_dssp HHHHHHHHHTSCCCTTTC
T ss_pred hHHHHHHhcCCcCChhhc
Confidence 999999999999999986
No 40
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=99.26 E-value=7.9e-12 Score=119.16 Aligned_cols=95 Identities=13% Similarity=0.224 Sum_probs=72.4
Q ss_pred CCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhh
Q 001083 800 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREK 878 (1160)
Q Consensus 800 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~ 878 (1160)
..++|+||++||+.+.....++ ..+.+...++.+||++++.++ ++||||+.+..+. .++ +..
T Consensus 4 ~~p~f~g~vvyvd~~~~~g~~~-------~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~~~--~~~---~A~----- 66 (107)
T 3pa6_A 4 AAPILKDVVAYVEVWSSNGTEN-------YSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGYQS--TWD---KAQ----- 66 (107)
T ss_dssp CCCTTTTCEEEEEEBCTTSCCB-------CHHHHHHHHHHTTCEECSSCCTTCCEEEEESCCHH--HHH---HHH-----
T ss_pred cccccCCEEEEEeccCCCChhh-------HHHHHHHHHHHcCCEEecccCCCccEEEEeCCCCh--HHH---HHh-----
Confidence 3568999999999876311112 135788999999999999998 5999999864311 122 111
Q ss_pred hhccCCccEEeccchHHHHHHcCCccCCCCCCCCCCC
Q 001083 879 HLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTG 915 (1160)
Q Consensus 879 ~~~~~~~~~IVt~~Wl~eci~~~~~v~Ee~Y~v~~~~ 915 (1160)
...++||+++||++|++++++++|+.|++..+.
T Consensus 67 ----~~~i~iV~~~Wv~~C~~~~~~vdE~~Y~i~~~~ 99 (107)
T 3pa6_A 67 ----KRGVKLVSVLWVEKCRTAGAHIDESLFPAANMN 99 (107)
T ss_dssp ----HHTCEEECHHHHHHHHHHTSCCCGGGSBCCCTT
T ss_pred ----cCCCEEECHHHHHHHHHhCccCChhcccCCCCc
Confidence 135799999999999999999999999987664
No 41
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.25 E-value=2.1e-12 Score=123.92 Aligned_cols=88 Identities=15% Similarity=0.206 Sum_probs=77.5
Q ss_pred CCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhcCC-CeeecchHHHHHhcCc
Q 001083 654 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKK 732 (1160)
Q Consensus 654 ~s~lF~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~~~~~Th~Ia~~~~~~K~~~a~~~~-~VV~p~WV~dCi~~~~ 732 (1160)
...+|+||.+|+.+. ....+.+|.++|..|||++...++..+||+|+....+.||+.+.+++ +||+++||.||+++|+
T Consensus 9 ~~~~F~g~~i~~sg~-~~~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~~~K~~~a~~~~i~IV~~~Wl~dsi~~g~ 87 (109)
T 2cou_A 9 KVPPFQDCILSFLGF-SDEEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTVKDLPFEPSKKLFVVKQEWFWGSIQMDA 87 (109)
T ss_dssp CCCTTTTCBEEEESS-CHHHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTTCSSCSSCCCTTSEEECHHHHHHHHHTTS
T ss_pred cCCcCCCeEEEecCC-CHHHHHHHHHHHHHcCCEEecccCCCccEEEEeCCccHHHHHHHHCCCeEecHHHHHHHHHcCC
Confidence 356999999998754 34678999999999999999988889999999887788899998888 9999999999999999
Q ss_pred cCCCCccccc
Q 001083 733 LLQLQPKYYL 742 (1160)
Q Consensus 733 lLp~~p~~~l 742 (1160)
+++..+|.+-
T Consensus 88 ~ldE~~Y~~~ 97 (109)
T 2cou_A 88 RAGETMYLYE 97 (109)
T ss_dssp CCCGGGTBCC
T ss_pred cCChhccCCC
Confidence 9998887443
No 42
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=2.6e-11 Score=117.17 Aligned_cols=96 Identities=16% Similarity=0.167 Sum_probs=73.4
Q ss_pred CCCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCCC-ceEEEEecCCCcccchhhhHHHHHHHh
Q 001083 799 DKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN-ATHVVVLSVLGYDVNFNSLTESFTARE 877 (1160)
Q Consensus 799 ~~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~-vTHVVV~~~~~~~~~~~~l~~~l~~~~ 877 (1160)
.+..+|+||++||..+.. ...+++++.++++++||+|++.+++ |||||+.+. +..++.+++..
T Consensus 16 ~p~~~F~g~~iy~v~~~~---------g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve~~-----~~~e~~~~l~~-- 79 (120)
T 2coe_A 16 PQDIKFQDLVVFILEKKM---------GTTRRALLMELARRKGFRVENELSDSVTHIVAENN-----SGSDVLEWLQA-- 79 (120)
T ss_dssp SSCCSCTTCEEEEECTTT---------CHHHHHHHHHHHHHHTCEECSSCCTTCCEEEESSC-----CHHHHHHHHHH--
T ss_pred CcccccCCeEEEEeeccc---------chHHHHHHHHHHHHcCCEEeeccCCCcCEEEecCC-----CHHHHHHHHhc--
Confidence 467899999999987652 2356899999999999999999984 999999632 23445555421
Q ss_pred hhhccCCccEEeccchHHHHHHcCCccCCCCCC
Q 001083 878 KHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYS 910 (1160)
Q Consensus 878 ~~~~~~~~~~IVt~~Wl~eci~~~~~v~Ee~Y~ 910 (1160)
.++.....++||+..||++||++|++|+|+.|.
T Consensus 80 ~~l~~~~~~~lv~i~Wl~esmk~g~lv~ee~~~ 112 (120)
T 2coe_A 80 QKVQVSSQPELLDVSWLIECIGAGKPVEMTGKH 112 (120)
T ss_dssp CCCCCSSCCEEEEHHHHHHHHHTTSCCCCSSSS
T ss_pred cccccccccEEeecHHHHHHHHcCCccCcccce
Confidence 111223468999999999999999999997663
No 43
>3qwu_A DNA ligase; structural genomics, PSI-2, midwest center for structural GE MCSG; HET: DNA ADN; 2.35A {Aquifex aeolicus}
Probab=99.19 E-value=1.2e-10 Score=132.19 Aligned_cols=151 Identities=19% Similarity=0.210 Sum_probs=102.4
Q ss_pred HHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEeCCCCCC---CcchhhHHH-HHHHhcccCceeeceeEEEEeCCCCcc
Q 001083 238 AWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDH---SEYGHAMSK-IIEQNVLVDRCILDGEMLVWDTSLNRF 313 (1160)
Q Consensus 238 ~~~~~~~~~~~~E~K~DGeR~qih~~g~~v~~fSR~g~d~---t~~~~~l~~-~l~~~~~~~~~ILDGElv~~d~~~~~~ 313 (1160)
.++.....+|++|+|+||.++-+.+.+|++..+||+|..+ |...+.+.. .+...+ ++++|||||++-+
T Consensus 66 ~i~~~f~~~~~veEKLDG~NVRi~~~dG~ilA~TRgG~icP~tT~r~~~~~~~~f~~~~--P~l~LdGEl~g~~------ 137 (370)
T 3qwu_A 66 GLREQFEAPFWVEEKVDGYNTRIFKYGDNYYALSRGGFICPFTTDRLPDLIDLRILDEN--PDLVICAEVAGPE------ 137 (370)
T ss_dssp HHHHHCSSCEEEEEECSSEEEEEEEETTEEEEECTTSCBCHHHHHHHHHHCCCHHHHHC--TTEEEEEEEECTT------
T ss_pred hhhhcCCCcEEEEEeeCCeEEEEEEECCEEEEEcCCCcccCcchhhhhhhcCchhhhcC--CCeEEEEEEEcCC------
Confidence 3333334689999999999998877778899999999875 223333221 122222 6899999998732
Q ss_pred cccccHHHHHHHhccCCCCCCccEEEEEEeeeecCCcccccCCHHHHHHHHHHhhccCCCcceeeccCCCCCccccCCCC
Q 001083 314 AEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGE 393 (1160)
Q Consensus 314 ~pF~~lq~i~~~~r~~~~~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~~~~~v~~~~~ 393 (1160)
.||.. .........+.|+||||...++ ..-+|+.+|+++|+.+-.+... ++.
T Consensus 138 npy~~---------~s~~y~~~~i~F~VFDV~d~~~--~~~L~~~eR~~ll~~~~lp~V~---ii~-------------- 189 (370)
T 3qwu_A 138 NPYIE---------ESPPYVKEDVQLFVFDFMKKNE--QGFLSQEEKMELIEKYNLPHVE---ILG-------------- 189 (370)
T ss_dssp CSSCS---------CCCTTCCSSCEEEEEEEEETTC--CSCCCHHHHHHHHHHHTCCBCC---EEE--------------
T ss_pred CCccc---------cCCcccccCceEEEEeCccccC--CCcCCHHHHHHHHHHCCCCCcc---EEE--------------
Confidence 23320 0011112348999999998542 3457999999999988654321 110
Q ss_pred CccceecC--CHHHHHHHHHHHHHcCCceEEEecCC
Q 001083 394 PCWSLVAH--NVDEVEKFFKETIENRDEGIVLKDLG 427 (1160)
Q Consensus 394 ~~~~~~~~--~~~ei~~~~~~ai~~g~EGlVlK~~d 427 (1160)
..... +.+++.+++++..+.|.||||+|+++
T Consensus 190 ---~~~~~~~~~~~l~~~l~~l~~~g~EGVVlK~~~ 222 (370)
T 3qwu_A 190 ---RFTASEEGIKKIKEILKRFNEEGREGVVFKEDS 222 (370)
T ss_dssp ---EECSSHHHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred ---EeCCCCCCHHHHHHHHHHHHhCCCcEEEEecCc
Confidence 12234 57789999999999999999999975
No 44
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.18 E-value=2.8e-11 Score=113.40 Aligned_cols=86 Identities=22% Similarity=0.403 Sum_probs=67.9
Q ss_pred CCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC--CceEEEEecCCCcccchhhhHHHHHHHh
Q 001083 800 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA--NATHVVVLSVLGYDVNFNSLTESFTARE 877 (1160)
Q Consensus 800 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls--~vTHVVV~~~~~~~~~~~~l~~~l~~~~ 877 (1160)
+..+|+||+||+.++.. .+ +..|.++|..+||++...++ .|||||+....+. .+ ++
T Consensus 9 ~~~lF~g~~~~isg~~~---~~--------~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~~~--k~---~~------ 66 (97)
T 2ebw_A 9 SSTIFSGVAIYVNGYTD---PS--------AEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNA--KI---KE------ 66 (97)
T ss_dssp CCCTTTTCEEEECSSCS---SC--------HHHHHHHHHHTTCEECSSCCSSSCCEEECSCCCTT--HH---HH------
T ss_pred CCCCCCCeEEEEeCCCc---cc--------HHHHHHHHHHcCCEEeeecCCCCCEEEEecCCChH--HH---HH------
Confidence 45799999999999753 12 45889999999999988775 5999999764311 11 11
Q ss_pred hhhccCCccEEeccchHHHHHHcCCccCCCCCCCC
Q 001083 878 KHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLK 912 (1160)
Q Consensus 878 ~~~~~~~~~~IVt~~Wl~eci~~~~~v~Ee~Y~v~ 912 (1160)
...++||+++||.+|+++++++|++.|.+-
T Consensus 67 -----~~~~~iV~p~Wl~dci~~~~~l~~~~Y~l~ 96 (97)
T 2ebw_A 67 -----LKGEKVIRPEWIVESIKAGRLLSYIPYQLY 96 (97)
T ss_dssp -----TSSSCCBCTHHHHHHHHHTSCCCSGGGBSC
T ss_pred -----hcCCCEeChHHHHHHHHcCCccCchHcEec
Confidence 126799999999999999999999999863
No 45
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=99.17 E-value=5.7e-11 Score=127.86 Aligned_cols=193 Identities=13% Similarity=0.196 Sum_probs=120.2
Q ss_pred CeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecC-CChhhHhhhcCC-CeeecchHHHHHhcCccCCCC
Q 001083 660 DMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADN-KGLKYEAAKRRG-DVIHYSWVLDCCSQKKLLQLQ 737 (1160)
Q Consensus 660 G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~~~~~Th~Ia~~~-~~~K~~~a~~~~-~VV~p~WV~dCi~~~~lLp~~ 737 (1160)
+..+++.+..+. ++.++|..+||.++.+.. .+||+|+... .|.||-.++..| +||+|+||.+|+++|++++.+
T Consensus 8 ~~~v~fSG~~~~----~~~~~i~~lGg~v~~~~~-~~THlV~~~~~RT~K~l~Aia~g~~IVs~~Wl~~~~~~~~~l~e~ 82 (220)
T 3l41_A 8 RVYITFTGYDKK----PSIDNLKKLDMSITSNPS-KCTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLKTHEIVDEE 82 (220)
T ss_dssp CEEEEECSCSSC----CCCGGGGGGTEEECSCTT-TCSEEECSSCCCBHHHHHHGGGCCEEECHHHHHHHHHHTSCCCSG
T ss_pred eEEEEEeccCCC----CCcchHhhcceeeccCch-hhhhhhhhhHhhhcceeecCCCCCeEEEhHHHHhhhhhhhccccC
Confidence 445565433322 248899999999998876 5999998654 688999998888 999999999999999999988
Q ss_pred cccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhhHHhhhcCCCCCCccCCCeEEEEccCCCC
Q 001083 738 PKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEP 817 (1160)
Q Consensus 738 p~~~l~~s~~t~~~~~~~~D~~gDSy~~~~~~~~L~~ll~~i~~~~~~~~i~~l~~~~~~~~~~~lF~gc~~yl~~~~~~ 817 (1160)
+| .+.... ... .|| ++ +...+.+ -+. ....||+|+.||+.....
T Consensus 83 ~y-~l~d~~-~e~-------~~~------~~---l~~~~~r------------ar~-----~~~~LF~G~~f~it~~~~- 126 (220)
T 3l41_A 83 PY-LLNDPE-KEL-------ELG------CT---LESALKR------------ARA-----QGPSLLEDYVVYLTSKTV- 126 (220)
T ss_dssp GG-BCCCHH-HHH-------HHT------SC---HHHHHHH------------HHH-----HCSCTTTTSEEEEETTSS-
T ss_pred cc-ccCCcH-HHh-------hcc------cc---HHHHHHH------------HHh-----cCchhhhheeEEEecccc-
Confidence 76 332111 000 011 00 1111110 000 124699999999987530
Q ss_pred CCChhHHHHHHHHHHHHHHHHhcCCEEEccCC--C--------ceEEEEecCCCcccchhhhHHHHHHHhhhhccCCccE
Q 001083 818 LSPDWEVLLGLALRRLKLEISFHGGKVCNNLA--N--------ATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLH 887 (1160)
Q Consensus 818 ~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls--~--------vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 887 (1160)
..+. .+.|..+|+.+||++....+ . -..||+.... +.... ..+.... .....++
T Consensus 127 ~~p~--------~~~l~~iI~~~GG~v~~~p~~~~~~~~~~~~~~~~vis~~~----d~~~~-~~f~~~~---~~~~~~~ 190 (220)
T 3l41_A 127 APEN--------VPAVISIVKSNGGVCSTLNVYNKRLARHLEDGNVVLITCNE----DSHIW-TNFLDNA---SQNKTIF 190 (220)
T ss_dssp CGGG--------HHHHHHHHHHTTCEEEEECSCCHHHHHHHHHCCEEEEECGG----GHHHH-TTTHHHH---TTCTTEE
T ss_pred CCCC--------CceEEEEEecCCcEechhhHHHHHHHHhcccCCEEEEEeCC----cchHH-HHhhccc---cccceEE
Confidence 0111 46789999999999998221 0 1244444322 22111 1111111 1245788
Q ss_pred EeccchHHHHHHcCCccCCCCC
Q 001083 888 VVRSQWLEDCLAKEQKSEEYEY 909 (1160)
Q Consensus 888 IVt~~Wl~eci~~~~~v~Ee~Y 909 (1160)
||+.+||..||-.+.+-=++.+
T Consensus 191 i~~~e~ll~~il~q~l~~~~~~ 212 (220)
T 3l41_A 191 LQNYDWLIKTVLRQEIDVNDRI 212 (220)
T ss_dssp EEEHHHHHHHHHHTCCCTTCCB
T ss_pred EechhHHHHHHHHHHcCcchHH
Confidence 9999999999998776555544
No 46
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.16 E-value=7.8e-11 Score=116.85 Aligned_cols=98 Identities=22% Similarity=0.378 Sum_probs=75.5
Q ss_pred cccCccccccCCCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhc---CC-Ce
Q 001083 643 FLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKR---RG-DV 718 (1160)
Q Consensus 643 ~~~~~~s~~~~~s~lF~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~~~~~Th~Ia~~~~~~K~~~a~~---~~-~V 718 (1160)
+...|+.-......+|+||.|||.+ .....++.|.++|..|||+++..++..+||+|+.+. +.+++.+.. .+ .|
T Consensus 26 ~~~~d~~~~~~~~~lF~g~~i~i~G-~~~~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~-~~~~~~~~~~~~~~~~i 103 (132)
T 1wf6_A 26 LENLDVSAFQAPEDLLDGCRIYLCG-FSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDY-DDELKQFWNKSAHRPHV 103 (132)
T ss_dssp STTCCGGGCCCCTTTTTTCEEEEES-CCSHHHHHHHHHHHHTTCEEESSCCSSCCEEEESSC-CSHHHHHHHHSCCCCCE
T ss_pred hhhcCcccccccccccCCEEEEEEC-CChHHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCc-hHHHHHHHHhhCCCCeE
Confidence 3344444444567899999999874 345678899999999999999988888999998754 334443321 23 99
Q ss_pred eecchHHHHHhcCccCCCCccccc
Q 001083 719 IHYSWVLDCCSQKKLLQLQPKYYL 742 (1160)
Q Consensus 719 V~p~WV~dCi~~~~lLp~~p~~~l 742 (1160)
|+|+||.||+++++++|.++|...
T Consensus 104 V~~~Wv~dsi~~~~ll~e~~Y~~~ 127 (132)
T 1wf6_A 104 VGAKWLLECFSKGYMLSEEPYIHS 127 (132)
T ss_dssp EEHHHHHHHHHHSSCCCSGGGBCC
T ss_pred echHHHHHHHHcCCcCCHhhccCC
Confidence 999999999999999999987443
No 47
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=99.15 E-value=7.9e-12 Score=119.12 Aligned_cols=98 Identities=16% Similarity=0.253 Sum_probs=72.1
Q ss_pred CCCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHh
Q 001083 799 DKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTARE 877 (1160)
Q Consensus 799 ~~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~ 877 (1160)
.+..+|+||+|||..... ... +++.....++.+||++++.++ +||||||.+.. +++++.+++..
T Consensus 7 ~~~~~F~g~~v~~~p~~~--~~~-------r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~----s~~~~l~~l~~-- 71 (106)
T 2jw5_A 7 EAEEWLSSLRAHVVRTGI--GRA-------RAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGM----DYERALRLLRL-- 71 (106)
T ss_dssp CGGGCGGGSCCCBCTTTC--CSS-------STTHHHHHHHHTTCCCCSTTCTTCCEEEECSSS----CHHHHHHHTTC--
T ss_pred cCcCEeCCeEEEEEecCC--chH-------HHHHHHHHHHHcCCEEeeccCCCccEEEEcCCC----CHHHHHHHHhh--
Confidence 467899999999975432 111 245677789999999999997 59999997432 34443433321
Q ss_pred hhhccCCccEEeccchHHHHHHcCCccCCCCCCCCC
Q 001083 878 KHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKP 913 (1160)
Q Consensus 878 ~~~~~~~~~~IVt~~Wl~eci~~~~~v~Ee~Y~v~~ 913 (1160)
......++||+++|+++||+++++|+|+.|.+..
T Consensus 72 --~~l~~~~~iV~~~Wv~dci~~~~llde~~y~~~~ 105 (106)
T 2jw5_A 72 --PQLPPGAQLVKSAWLSLCLQERRLVDVAGFSIFI 105 (106)
T ss_dssp --SSCCSSCEEEEHHHHHHHHHTCSCCCGGGTBCSC
T ss_pred --cccCCCcEEecCchHHHHHhcCcccCcccccccC
Confidence 0112467999999999999999999999998754
No 48
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=1.1e-10 Score=115.28 Aligned_cols=90 Identities=16% Similarity=0.280 Sum_probs=72.4
Q ss_pred ccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhhhh
Q 001083 802 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKHL 880 (1160)
Q Consensus 802 ~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~ 880 (1160)
.+|.||+|||.|+.. . .+..|..+|..+||+++..++ .|||||+....+ ..+. +..
T Consensus 21 ~~f~g~~i~itG~~~---~--------~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~--~K~~---~A~------- 77 (129)
T 2d8m_A 21 KILQGVVVVLSGFQN---P--------FRSELRDKALELGAKYRPDWTRDSTHLICAFANT--PKYS---QVL------- 77 (129)
T ss_dssp TTSTTEEEEEESCCT---T--------HHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSC--HHHH---HHH-------
T ss_pred ccCCCeEEEEeCCCc---H--------HHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCC--hHHH---HHH-------
Confidence 479999999999852 1 356889999999999999998 599999986432 1222 211
Q ss_pred ccCCccEEeccchHHHHHHcCCccCCCCCCCCCCCC
Q 001083 881 LWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTGM 916 (1160)
Q Consensus 881 ~~~~~~~IVt~~Wl~eci~~~~~v~Ee~Y~v~~~~~ 916 (1160)
...++||+++||.+|++.+++++|+.|.+..+..
T Consensus 78 --~~gi~IV~~~Wl~d~~~~~~~l~e~~Y~l~~~~~ 111 (129)
T 2d8m_A 78 --GLGGRIVRKEWVLDCHRMRRRLPSQRYLMAGPGS 111 (129)
T ss_dssp --HHTCEEEETHHHHHHHHTTSCCCGGGGBCSSSSC
T ss_pred --HCCCcEecHHHHHHHHHhCCcCChHhcccCCCCc
Confidence 1468999999999999999999999999887763
No 49
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.11 E-value=1.3e-10 Score=130.77 Aligned_cols=148 Identities=14% Similarity=0.218 Sum_probs=110.0
Q ss_pred HHHHHcCCE-EEec--------CC-CCceEEEEecCCChhhHhhhcCC-CeeecchHHHHHhcCccCCCCcccccccChh
Q 001083 679 KMVVENGGT-FSMN--------LN-NSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKKLLQLQPKYYLHLSDS 747 (1160)
Q Consensus 679 klI~~~GG~-~v~n--------~~-~~~Th~Ia~~~~~~K~~~a~~~~-~VV~p~WV~dCi~~~~lLp~~p~~~l~~s~~ 747 (1160)
+.|.++++. +++- .. +..+..|+.+..+..|..+...+ +||.|+||.+|++.++.+|..|+.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~~~F~g~~f~~l~~~~~~iv~p~~v~~c~~~~~~lp~~~~P~y----- 102 (298)
T 3olc_X 28 ESIKEFQSEEYLQIITEEEALKIKENDRSLYICDPFSGVVFDHLKKLGCRIVGPQVVIFCMHHQRCVPRAEHPVY----- 102 (298)
T ss_dssp HHHHHHSCGGGEEEEEHHHHTTCCSCCSCEEECSSSCSHHHHHHHHHTCEEECHHHHHHHHHTTCCCCCCSSCBC-----
T ss_pred HHHHHhcCCcccEEecHHHHhhCCCCCCeEEEecCCCCHHHHHHHHCCCCEECHHHHHHHHHhCCcCCCCCCccc-----
Confidence 356777777 3331 11 22356676777889999998887 99999999999999999987653111
Q ss_pred hhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhhHHhhhcCCCCCCccCCCeEEEEccCCCCCCChhHHHHH
Q 001083 748 SKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVLLG 827 (1160)
Q Consensus 748 t~~~~~~~~D~~gDSy~~~~~~~~L~~ll~~i~~~~~~~~i~~l~~~~~~~~~~~lF~gc~~yl~~~~~~~~~d~~~i~~ 827 (1160)
..+|+|++|++.|+.+
T Consensus 103 -----------------------------------------------------~~~l~g~~~~~tG~~~----------- 118 (298)
T 3olc_X 103 -----------------------------------------------------NMVMSDVTISCTSLEK----------- 118 (298)
T ss_dssp -----------------------------------------------------CCTTTTCEEEEESCCH-----------
T ss_pred -----------------------------------------------------ccccCCeEEEeCCCcH-----------
Confidence 2369999999999752
Q ss_pred HHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhhhhccCCccEEeccchHHHHHHcCCccCC
Q 001083 828 LALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEE 906 (1160)
Q Consensus 828 ~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~IVt~~Wl~eci~~~~~v~E 906 (1160)
.++..+...|..+||+++.+++ ++||||+....+ ..+ +.+. ...+.||+++||.+|+..++.++.
T Consensus 119 ~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~~t--~Ky---~~A~---------~~gi~IV~~~Wl~~c~~~~~~~~~ 184 (298)
T 3olc_X 119 EKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGS--KKY---LVAA---------NLKKPILLPSWIKTLWEKSQEKKI 184 (298)
T ss_dssp HHHHHHHHHHHHTTCEECSSCCTTCCEEEESSSCS--HHH---HHHH---------HTTCCEECHHHHHHHHHHHHTTCC
T ss_pred HhHHHHHHHHHHCCCEEecCcCCCeeEEEEeCCCC--hHH---HHHH---------HCCCeEeeHHHHHHHHHcCCcCCc
Confidence 1467899999999999999998 599999986432 122 2211 246799999999999999988765
Q ss_pred CCC
Q 001083 907 YEY 909 (1160)
Q Consensus 907 e~Y 909 (1160)
..|
T Consensus 185 ~~~ 187 (298)
T 3olc_X 185 TRY 187 (298)
T ss_dssp SSG
T ss_pred ccc
Confidence 443
No 50
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.11 E-value=1e-10 Score=111.70 Aligned_cols=93 Identities=14% Similarity=0.155 Sum_probs=70.1
Q ss_pred CCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhh
Q 001083 800 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREK 878 (1160)
Q Consensus 800 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~ 878 (1160)
...+|.||+|||.|+.. . .+..+..+|..+||++...++ +|||||+....+. .-..+++..
T Consensus 12 ~~~~l~g~~i~isg~~~---~--------~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~--~~~K~~~A~----- 73 (107)
T 3l3e_A 12 APKPLHKVVVCVSKKLS---K--------KQSELNGIAASLGADYRRSFDETVTHFIYQGRPND--TNREYKSVK----- 73 (107)
T ss_dssp --CTTTTCEEEECGGGG---G--------GHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTC--CCHHHHHHH-----
T ss_pred ccCCCCCeEEEEeCCCh---H--------hHHHHHHHHHHcCCEEeccccCCceEEEecCCCCC--CCHHHHHHH-----
Confidence 34589999999999752 1 256889999999999999998 5999999532111 111222211
Q ss_pred hhccCCccEEeccchHHHHHHcCCccCCCCCCCCCC
Q 001083 879 HLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPT 914 (1160)
Q Consensus 879 ~~~~~~~~~IVt~~Wl~eci~~~~~v~Ee~Y~v~~~ 914 (1160)
...++||+++||.+|++.++++||++|++..+
T Consensus 74 ----~~gi~IV~~~Wl~~c~~~~~~l~e~~Y~~~~~ 105 (107)
T 3l3e_A 74 ----ERGVHIVSEHWLLDCAQECKHLPESLYPHTYN 105 (107)
T ss_dssp ----HTTCEEECHHHHHHHHHHTSCCCGGGCCTTCC
T ss_pred ----HCCCeEecHHHHHHHHHhCCCCchhhCCCCCC
Confidence 24689999999999999999999999998655
No 51
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=1.1e-09 Score=102.97 Aligned_cols=80 Identities=20% Similarity=0.168 Sum_probs=62.8
Q ss_pred CCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccC-----------C-CceEEEEecCCCcccchh
Q 001083 800 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNL-----------A-NATHVVVLSVLGYDVNFN 867 (1160)
Q Consensus 800 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~l-----------s-~vTHVVV~~~~~~~~~~~ 867 (1160)
...||+||+||++...+ ++.|..+|+.+||+++.+. + .+||+|++.+. ..
T Consensus 9 ~~~LF~g~~F~i~~e~p-------------~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~-----~~ 70 (100)
T 2ep8_A 9 HKKLFEGLKFFLNREVP-------------REALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPG-----QQ 70 (100)
T ss_dssp SCCTTSSCEEECCSSSC-------------HHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTT-----TS
T ss_pred hHHHcCCcEEEEecCCC-------------HHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccc-----hh
Confidence 56799999999987432 4578889999999999862 3 49999997532 11
Q ss_pred hhHHHHHHHhhhhccCCccEEeccchHHHHHHcCCccCCCCCC
Q 001083 868 SLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYS 910 (1160)
Q Consensus 868 ~l~~~l~~~~~~~~~~~~~~IVt~~Wl~eci~~~~~v~Ee~Y~ 910 (1160)
+ ......+|.+.||.+|+++++++|+++|.
T Consensus 71 ---~----------~~~~r~~VqPqWV~Dcin~~~lLp~~~Y~ 100 (100)
T 2ep8_A 71 ---T----------SVIGRCYVQPQWVFDSVNARLLLPVAEYF 100 (100)
T ss_dssp ---C----------CBTTBEEECTHHHHHHHHHTSCCCTTTCC
T ss_pred ---h----------hcCCCeEEcchHHHHHHhcCCcCChhhcC
Confidence 0 01334999999999999999999999994
No 52
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=98.96 E-value=1.1e-09 Score=104.38 Aligned_cols=86 Identities=21% Similarity=0.341 Sum_probs=73.1
Q ss_pred CCcccCeEEEEEcCC-CC--CChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhcCC-CeeecchHHHHHhc
Q 001083 655 TSIFSDMVFYFVNVP-PA--YSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQ 730 (1160)
Q Consensus 655 s~lF~G~~F~vv~~~-~~--~~k~eL~klI~~~GG~~v~n~~~~~Th~Ia~~~~~~K~~~a~~~~-~VV~p~WV~dCi~~ 730 (1160)
.++|+|+++||.... .. ...+.+..++..+||+++..++..+||+|+.+..+.+|+.+.+++ +||+++||.+|+++
T Consensus 5 ~p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~~~~~~~A~~~~i~iV~~~Wv~~C~~~ 84 (107)
T 3pa6_A 5 APILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGYQSTWDKAQKRGVKLVSVLWVEKCRTA 84 (107)
T ss_dssp CCTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCTTCCEEEEESCCHHHHHHHHHHTCEEECHHHHHHHHHH
T ss_pred ccccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCCCccEEEEeCCCChHHHHHhcCCCEEECHHHHHHHHHh
Confidence 359999999984321 12 235789999999999999999989999999887777899888888 99999999999999
Q ss_pred CccCCCCccc
Q 001083 731 KKLLQLQPKY 740 (1160)
Q Consensus 731 ~~lLp~~p~~ 740 (1160)
++.++.++|.
T Consensus 85 ~~~vdE~~Y~ 94 (107)
T 3pa6_A 85 GAHIDESLFP 94 (107)
T ss_dssp TSCCCGGGSB
T ss_pred CccCChhccc
Confidence 9999988763
No 53
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=98.92 E-value=9.2e-10 Score=100.38 Aligned_cols=73 Identities=25% Similarity=0.384 Sum_probs=58.6
Q ss_pred CCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC--CceEEEEecCCCcccchhhhHHHHHHHh
Q 001083 800 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA--NATHVVVLSVLGYDVNFNSLTESFTARE 877 (1160)
Q Consensus 800 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls--~vTHVVV~~~~~~~~~~~~l~~~l~~~~ 877 (1160)
...+|.||+|||++..+ + ...|.++|.+|||+++.+.+ ++||||+....
T Consensus 13 LpdiFsg~~~~l~~~v~----~--------~~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~~~----------------- 63 (88)
T 3pc7_A 13 LLDIFTGVRLYLPPSTP----D--------FSRLRRYFVAFDGDLVQEFDMTSATHVLGSRDK----------------- 63 (88)
T ss_dssp CCCCSTTCEECCCTTST----T--------HHHHHHHHHHTTCEECCGGGGGGCSEEESCCTT-----------------
T ss_pred CChhhcCeEEEccCCcC----c--------hhhheeeeeecCCEEecccCCCcCeEEecCCCc-----------------
Confidence 45699999999987532 2 25888999999999988665 59999965310
Q ss_pred hhhccCCccEEeccchHHHHHHcCCccCC
Q 001083 878 KHLLWNKKLHVVRSQWLEDCLAKEQKSEE 906 (1160)
Q Consensus 878 ~~~~~~~~~~IVt~~Wl~eci~~~~~v~E 906 (1160)
....++|++.||++||+.+++||+
T Consensus 64 -----~~~~~~V~p~WI~dcI~k~~Ll~~ 87 (88)
T 3pc7_A 64 -----NPAAQQVSPEWIWACIRKRRLVAP 87 (88)
T ss_dssp -----CTTSEEECHHHHHHHHHHTSCCSC
T ss_pred -----CCCCcEEchHHHHHHHhCCcccCC
Confidence 245689999999999999999986
No 54
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=98.82 E-value=4.5e-09 Score=102.04 Aligned_cols=97 Identities=18% Similarity=0.089 Sum_probs=73.9
Q ss_pred CccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCCC-ceEEEEecCCCcccchhhhHHHHHHHhhh
Q 001083 801 WSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN-ATHVVVLSVLGYDVNFNSLTESFTAREKH 879 (1160)
Q Consensus 801 ~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~-vTHVVV~~~~~~~~~~~~l~~~l~~~~~~ 879 (1160)
...|.+|++||.... +...++++|.++++..||++.+.+++ |||||+.+. +...+.+||.....+
T Consensus 8 ~~~F~~v~iyive~k---------mG~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~-----s~~~~~~~L~~~~~~ 73 (133)
T 2dun_A 8 STRFPGVAIYLVEPR---------MGRSRRAFLTGLARSKGFRVLDACSSEATHVVMEET-----SAEEAVSWQERRMAA 73 (133)
T ss_dssp SCSEEEEEEEECHHH---------HCSHHHHHHHHHHHHHTEEECSSCCTTCCEEEESSC-----CHHHHHHHHHHHHHH
T ss_pred ccccCccEEEEecCC---------cCHHHHHHHHHHHHhcCCEeccccCCCceEEEecCC-----CHHHHHHHHHHhhcc
Confidence 457999999999864 22246889999999999999999995 999999542 345566666322222
Q ss_pred hc-cCCccEEeccchHHHHHHcCCccCCCCCCC
Q 001083 880 LL-WNKKLHVVRSQWLEDCLAKEQKSEEYEYSL 911 (1160)
Q Consensus 880 ~~-~~~~~~IVt~~Wl~eci~~~~~v~Ee~Y~v 911 (1160)
+. ....+++|...|+.+|+++|+.|+++.|.+
T Consensus 74 l~~~~~~~~lLdisWltecm~~g~pV~~e~~~~ 106 (133)
T 2dun_A 74 APPGCTPPALLDISWLTESLGAGQPVPVECRHR 106 (133)
T ss_dssp SCTTCCCCEEEEHHHHHHHHHHTSCCCCCTTTS
T ss_pred cCcCCCCcEEeccHHHHHHHhcCCcCCcccceE
Confidence 21 224589999999999999999999977653
No 55
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=98.82 E-value=1.7e-09 Score=98.56 Aligned_cols=73 Identities=19% Similarity=0.456 Sum_probs=57.7
Q ss_pred CCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCC-CceEEEEecCCChhhHhhhcCC-CeeecchHHHHHhcC
Q 001083 654 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNN-SVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQK 731 (1160)
Q Consensus 654 ~s~lF~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~~~-~~Th~Ia~~~~~~K~~~a~~~~-~VV~p~WV~dCi~~~ 731 (1160)
-.++|+|+.|++-...+ ....|++.|..+||.++.+.+. .+||+|+... ...+ .+|+|+||+|||+++
T Consensus 13 LpdiFsg~~~~l~~~v~--~~~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~~--------~~~~~~~V~p~WI~dcI~k~ 82 (88)
T 3pc7_A 13 LLDIFTGVRLYLPPSTP--DFSRLRRYFVAFDGDLVQEFDMTSATHVLGSRD--------KNPAAQQVSPEWIWACIRKR 82 (88)
T ss_dssp CCCCSTTCEECCCTTST--THHHHHHHHHHTTCEECCGGGGGGCSEEESCCT--------TCTTSEEECHHHHHHHHHHT
T ss_pred CChhhcCeEEEccCCcC--chhhheeeeeecCCEEecccCCCcCeEEecCCC--------cCCCCcEEchHHHHHHHhCC
Confidence 35799999999754433 2368999999999999887653 6899995432 1223 899999999999999
Q ss_pred ccCCC
Q 001083 732 KLLQL 736 (1160)
Q Consensus 732 ~lLp~ 736 (1160)
++||.
T Consensus 83 ~Ll~~ 87 (88)
T 3pc7_A 83 RLVAP 87 (88)
T ss_dssp SCCSC
T ss_pred cccCC
Confidence 99985
No 56
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=98.78 E-value=8.1e-09 Score=119.22 Aligned_cols=86 Identities=20% Similarity=0.261 Sum_probs=76.6
Q ss_pred CCcccCeEEEEEcCCC---CCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhcC-C-CeeecchHHHHHh
Q 001083 655 TSIFSDMVFYFVNVPP---AYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRR-G-DVIHYSWVLDCCS 729 (1160)
Q Consensus 655 s~lF~G~~F~vv~~~~---~~~k~eL~klI~~~GG~~v~n~~~~~Th~Ia~~~~~~K~~~a~~~-~-~VV~p~WV~dCi~ 729 (1160)
+.+|+||+||+.+..+ ...+.++.+++..+||+++.+++..+||+|++...|.|++.|.++ + +||+++||.+|+.
T Consensus 280 ~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~~t~K~~~A~~~~~I~IV~~~Wl~~c~~ 359 (372)
T 3ef0_A 280 QKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTESLS 359 (372)
T ss_dssp TTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSSCCSEEEECSCCCHHHHHHHHSSSCCEEEHHHHHHHHH
T ss_pred hhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCCCceEEEEcCCCchHHHHHHhcCCCEEEcHHHHHHHHH
Confidence 4799999999976543 245689999999999999999998899999999899999999988 5 9999999999999
Q ss_pred cCccCCCCccc
Q 001083 730 QKKLLQLQPKY 740 (1160)
Q Consensus 730 ~~~lLp~~p~~ 740 (1160)
+++.+|.++|-
T Consensus 360 ~~~~vdE~~Y~ 370 (372)
T 3ef0_A 360 QWKRLPESDYL 370 (372)
T ss_dssp TTSCCCGGGGB
T ss_pred hCCcCChhhce
Confidence 99999988764
No 57
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=98.74 E-value=7.6e-09 Score=120.91 Aligned_cols=87 Identities=21% Similarity=0.286 Sum_probs=77.4
Q ss_pred CCCcccCeEEEEEcCCC---CCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhcCC--CeeecchHHHHH
Q 001083 654 ETSIFSDMVFYFVNVPP---AYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG--DVIHYSWVLDCC 728 (1160)
Q Consensus 654 ~s~lF~G~~F~vv~~~~---~~~k~eL~klI~~~GG~~v~n~~~~~Th~Ia~~~~~~K~~~a~~~~--~VV~p~WV~dCi 728 (1160)
.+.+|.||+||+.+..+ ..++.+|..+|..+||+++..++..+||+|++...|.||+.|.+++ +||+++||.+|+
T Consensus 349 k~~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~~~~t~K~~~A~~~g~IkIVs~~WL~dcl 428 (442)
T 3ef1_A 349 KQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTESL 428 (442)
T ss_dssp HHTTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSSSCCSEEEECSCCCHHHHHHHHHSSSEEEEHHHHHHHH
T ss_pred hhcccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCCCCCceEEEeCCCCCHHHHHHHhcCCCEEEeHHHHHHHH
Confidence 46799999999986442 2467899999999999999999989999999999999999999884 899999999999
Q ss_pred hcCccCCCCccc
Q 001083 729 SQKKLLQLQPKY 740 (1160)
Q Consensus 729 ~~~~lLp~~p~~ 740 (1160)
.+++.+|..+|-
T Consensus 429 ~~~krldE~~Yl 440 (442)
T 3ef1_A 429 SQWKRLPESDYL 440 (442)
T ss_dssp HHTSCCCGGGTB
T ss_pred HcCCcCChhccc
Confidence 999999988763
No 58
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=98.62 E-value=3.4e-08 Score=114.01 Aligned_cols=91 Identities=16% Similarity=0.264 Sum_probs=69.4
Q ss_pred CccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhhh
Q 001083 801 WSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKH 879 (1160)
Q Consensus 801 ~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~ 879 (1160)
..+|.||+|+|+|+.+.... .+...+..++..+||+++..++ +|||||+....+. .+ +++.
T Consensus 280 ~~~L~G~~ivfSG~~~~~~~-------~~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~~t~--K~---~~A~------ 341 (372)
T 3ef0_A 280 QKVLKGCRLLFSGVIPLGVD-------VLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTE--KV---KKAV------ 341 (372)
T ss_dssp TTTSTTCEEEEESSSCTTSC-------TTTSHHHHHHHHTTCEEESSSSSCCSEEEECSCCCH--HH---HHHH------
T ss_pred hhhcCCcEEEEecccCCCcc-------hhHHHHHHHHHHcCCEEeCcCCCCceEEEEcCCCch--HH---HHHH------
Confidence 35799999999998642111 0134788899999999999999 5999999864321 12 2211
Q ss_pred hccCCccEEeccchHHHHHHcCCccCCCCCCC
Q 001083 880 LLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSL 911 (1160)
Q Consensus 880 ~~~~~~~~IVt~~Wl~eci~~~~~v~Ee~Y~v 911 (1160)
..+.++||+++||++|++.+++++|+.|.+
T Consensus 342 --~~~~I~IV~~~Wl~~c~~~~~~vdE~~Y~l 371 (372)
T 3ef0_A 342 --SMGNIKVVKLNWLTESLSQWKRLPESDYLL 371 (372)
T ss_dssp --HSSSCCEEEHHHHHHHHHTTSCCCGGGGBC
T ss_pred --hcCCCEEEcHHHHHHHHHhCCcCChhhcee
Confidence 124689999999999999999999999986
No 59
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=98.62 E-value=1.6e-08 Score=107.32 Aligned_cols=79 Identities=23% Similarity=0.331 Sum_probs=61.1
Q ss_pred CCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhcCC-CeeecchHHHHHhcCc
Q 001083 654 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKK 732 (1160)
Q Consensus 654 ~s~lF~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~~~~~Th~Ia~~~~~~K~~~a~~~~-~VV~p~WV~dCi~~~~ 732 (1160)
...||+|+.|++++.....++++|+.+|..+||+++.++.. ++. |+++... .+..+ +||+|+||+|||++++
T Consensus 116 ~~~LF~g~~~~~v~~~~~~~~~~L~~lI~~~GG~v~~~~~~-~~i-iI~~~~~-----~~~~~~~~V~p~Wi~DsI~~~~ 188 (199)
T 3u3z_A 116 RGTLFADQPVMFVSPASSPPVAKLCELVHLCGGRVSQVPRQ-ASI-VIGPYSG-----KKKATVKYLSEKWVLDSITQHK 188 (199)
T ss_dssp CCCTTTTSCCEEECTTCSSCHHHHHHHHHHTTCCBCSSGGG-CSE-EESCCCS-----CCCTTCEEECHHHHHHHHHHTS
T ss_pred cchhhCCCeEEEECCCCCCCHHHHHHHHHHcCCEEeccCCC-CEE-EEeCCch-----hccCCCcEEChhHHHHHHHcCC
Confidence 34799999655455555678999999999999999998853 444 4444222 23444 9999999999999999
Q ss_pred cCCCCcc
Q 001083 733 LLQLQPK 739 (1160)
Q Consensus 733 lLp~~p~ 739 (1160)
++|+++|
T Consensus 189 llp~~~Y 195 (199)
T 3u3z_A 189 VCAPENY 195 (199)
T ss_dssp CCCGGGG
T ss_pred cCChHhc
Confidence 9999976
No 60
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=98.57 E-value=2e-08 Score=95.63 Aligned_cols=90 Identities=14% Similarity=0.271 Sum_probs=65.6
Q ss_pred CCCCcccCeEEEEEcCCCCCC-hHHHHHHHHHcCCEEEecCCCCceEEEEecCCChh--hHhhhc-----CCCeeecchH
Q 001083 653 GETSIFSDMVFYFVNVPPAYS-LDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLK--YEAAKR-----RGDVIHYSWV 724 (1160)
Q Consensus 653 ~~s~lF~G~~F~vv~~~~~~~-k~eL~klI~~~GG~~v~n~~~~~Th~Ia~~~~~~K--~~~a~~-----~~~VV~p~WV 724 (1160)
....+|+||.||++....... ++-..+++.++||+++..+++.+||+|+.+..+.+ .+.+.. ...||+++||
T Consensus 7 ~~~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~s~~~~l~~l~~~~l~~~~~iV~~~Wv 86 (106)
T 2jw5_A 7 EAEEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRLPQLPPGAQLVKSAWL 86 (106)
T ss_dssp CGGGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCSTTCTTCCEEEECSSSCHHHHHHHTTCSSCCSSCEEEEHHHH
T ss_pred cCcCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeeccCCCccEEEEcCCCCHHHHHHHHhhcccCCCcEEecCchH
Confidence 346799999999875443333 44455699999999999998889999985433221 111111 1279999999
Q ss_pred HHHHhcCccCCCCccccc
Q 001083 725 LDCCSQKKLLQLQPKYYL 742 (1160)
Q Consensus 725 ~dCi~~~~lLp~~p~~~l 742 (1160)
.||++.+++|+.++|++.
T Consensus 87 ~dci~~~~llde~~y~~~ 104 (106)
T 2jw5_A 87 SLCLQERRLVDVAGFSIF 104 (106)
T ss_dssp HHHHHTCSCCCGGGTBCS
T ss_pred HHHHhcCcccCccccccc
Confidence 999999999999887543
No 61
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=98.54 E-value=6.5e-08 Score=113.08 Aligned_cols=90 Identities=18% Similarity=0.294 Sum_probs=68.7
Q ss_pred ccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhhhh
Q 001083 802 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKHL 880 (1160)
Q Consensus 802 ~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~ 880 (1160)
.+|.||+|+|+|+.+.. .+ ..+..+...+..+||+++..++ +|||||+....+. .+ +.+.
T Consensus 351 ~~L~G~~IvfSG~~p~~-~~------~~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~~~~t~--K~---~~A~------- 411 (442)
T 3ef1_A 351 KVLKGCRLLFSGVIPLG-VD------VLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTE--KV---KKAV------- 411 (442)
T ss_dssp TTSTTCEEEEESSSCTT-SC------STTSHHHHHHHTTTCEECSSSSSCCSEEEECSCCCH--HH---HHHH-------
T ss_pred cccCCcEEEEecccCCC-CC------ccHHHHHHHHHHcCCEEeCCCCCCceEEEeCCCCCH--HH---HHHH-------
Confidence 47999999999986421 10 0134788899999999999998 5999999864321 22 2211
Q ss_pred ccCCccEEeccchHHHHHHcCCccCCCCCCC
Q 001083 881 LWNKKLHVVRSQWLEDCLAKEQKSEEYEYSL 911 (1160)
Q Consensus 881 ~~~~~~~IVt~~Wl~eci~~~~~v~Ee~Y~v 911 (1160)
..+.++||+++||++|+..+++++|..|++
T Consensus 412 -~~g~IkIVs~~WL~dcl~~~krldE~~YlL 441 (442)
T 3ef1_A 412 -SMGNIKVVKLNWLTESLSQWKRLPESDYLL 441 (442)
T ss_dssp -HHSSSEEEEHHHHHHHHHHTSCCCGGGTBC
T ss_pred -hcCCCEEEeHHHHHHHHHcCCcCChhcccc
Confidence 123689999999999999999999999986
No 62
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=98.51 E-value=1.2e-07 Score=101.11 Aligned_cols=87 Identities=20% Similarity=0.240 Sum_probs=65.0
Q ss_pred CCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCC----ceE-EEEecCCC----hhhHh-hhcCC-Ceeecc
Q 001083 654 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNS----VTH-CVAADNKG----LKYEA-AKRRG-DVIHYS 722 (1160)
Q Consensus 654 ~s~lF~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~~~~----~Th-~Ia~~~~~----~K~~~-a~~~~-~VV~p~ 722 (1160)
...+|+|+.||+.+......+++|+.+|..+||+++..+... .+| +|+.+... .++++ +...+ +||+++
T Consensus 112 ~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~~ 191 (214)
T 1t15_A 112 DRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTRE 191 (214)
T ss_dssp TSCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEHH
T ss_pred CCcccCCCEEEEEecCCCCCHHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCcccchhhHHHHHHhcCCcEEecc
Confidence 457999999998765555679999999999999999876431 234 55554322 24443 23345 999999
Q ss_pred hHHHHHhcCccCCCCccc
Q 001083 723 WVLDCCSQKKLLQLQPKY 740 (1160)
Q Consensus 723 WV~dCi~~~~lLp~~p~~ 740 (1160)
||+||+.+++++|+++|.
T Consensus 192 Wi~dsi~~~~~l~~~~Y~ 209 (214)
T 1t15_A 192 WVLDSVALYQCQELDTYL 209 (214)
T ss_dssp HHHHHHHHTSCCCSGGGB
T ss_pred HHHHhHhhcCcCCCccee
Confidence 999999999999999873
No 63
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=98.44 E-value=2.2e-07 Score=99.88 Aligned_cols=91 Identities=19% Similarity=0.324 Sum_probs=70.6
Q ss_pred CCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCCCceEEEEecCCCcccchhhhHHHHHHHhhh
Q 001083 800 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKH 879 (1160)
Q Consensus 800 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~ 879 (1160)
+...+.+++|+|+|+.. .+.+.+...|+.+||+++++.++|||||++... +. .+- ...+
T Consensus 10 ~~~~~~~~~i~~SG~~~-----------~~~~~l~~~i~~lGg~v~~~~~~~THLI~~~~~-rT--~K~-l~A~------ 68 (219)
T 3sqd_A 10 KLTPELTPFVLFTGFEP-----------VQVQQYIKKLYILGGEVAESAQKCTHLIASKVT-RT--VKF-LTAI------ 68 (219)
T ss_dssp CCCGGGCCEEEECSCCH-----------HHHHHHHHHHHHTTCEECSSGGGCSEEECSSCC-CC--HHH-HHHT------
T ss_pred ccCCCCCeEEEEeCCCh-----------HHHHHHHHHHHHCCCEEeCCCCCceEEEECCCC-CC--HHH-HHHH------
Confidence 34468899999999863 235678999999999999998789999997532 21 121 1111
Q ss_pred hccCCccEEeccchHHHHHHcCCccCCCCCCCCCC
Q 001083 880 LLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPT 914 (1160)
Q Consensus 880 ~~~~~~~~IVt~~Wl~eci~~~~~v~Ee~Y~v~~~ 914 (1160)
.....||+++||.+|++.++.++|++|.+..+
T Consensus 69 ---~~g~~IVs~~Wl~~c~~~~~~l~e~~y~l~d~ 100 (219)
T 3sqd_A 69 ---SVVKHIVTPEWLEECFRCQKFIDEQNYILRDA 100 (219)
T ss_dssp ---TTCSEEECHHHHHHHHHHTSCCCSGGGBCCCH
T ss_pred ---HcCCCEecHHHHHHHHHcCCCCChHhccCCCc
Confidence 24568999999999999999999999998765
No 64
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=4.1e-07 Score=87.90 Aligned_cols=91 Identities=22% Similarity=0.330 Sum_probs=69.9
Q ss_pred CCCcccCeEEEEEcCCC-CCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhc-----C---CCeeecchH
Q 001083 654 ETSIFSDMVFYFVNVPP-AYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKR-----R---GDVIHYSWV 724 (1160)
Q Consensus 654 ~s~lF~G~~F~vv~~~~-~~~k~eL~klI~~~GG~~v~n~~~~~Th~Ia~~~~~~K~~~a~~-----~---~~VV~p~WV 724 (1160)
...+|.|+++|++...- ...++-+.+++..+||+++..+.+.+||||+.+.....+....+ . ..||+.+||
T Consensus 17 p~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve~~~~~e~~~~l~~~~l~~~~~~~lv~i~Wl 96 (120)
T 2coe_A 17 QDIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENELSDSVTHIVAENNSGSDVLEWLQAQKVQVSSQPELLDVSWL 96 (120)
T ss_dssp SCCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEESSCCHHHHHHHHHHCCCCCSSCCEEEEHHHH
T ss_pred cccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeeccCCCcCEEEecCCCHHHHHHHHhccccccccccEEeecHHH
Confidence 34799999999975432 22356667899999999999988899999996543333333222 1 289999999
Q ss_pred HHHHhcCccCCCCccccccc
Q 001083 725 LDCCSQKKLLQLQPKYYLHL 744 (1160)
Q Consensus 725 ~dCi~~~~lLp~~p~~~l~~ 744 (1160)
.+|++.|+++|.+.+|.|..
T Consensus 97 ~esmk~g~lv~ee~~~~l~~ 116 (120)
T 2coe_A 97 IECIGAGKPVEMTGKHQLSG 116 (120)
T ss_dssp HHHHHTTSCCCCSSSSBCCC
T ss_pred HHHHHcCCccCcccceEecc
Confidence 99999999999998888754
No 65
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=98.40 E-value=5.7e-07 Score=95.94 Aligned_cols=85 Identities=14% Similarity=0.201 Sum_probs=65.5
Q ss_pred CeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhhhhccCC
Q 001083 806 GCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNK 884 (1160)
Q Consensus 806 gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 884 (1160)
+++|+++|+.. .+...+..+++.+||+++++++ +|||||+.... .....+.++ .+ ..
T Consensus 2 ~~vi~~sg~~~-----------~~~~~l~~~~~~~G~~~~~~~~~~~THlV~~~~~-~~rt~K~l~-a~---------~~ 59 (210)
T 2nte_A 2 PLVLIGSGLSS-----------EQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDA-VQSTLKCML-GI---------LN 59 (210)
T ss_dssp CCEEEESSCCH-----------HHHHHHHHHHHHTTCEEESSCCTTCCEEEESSSS-CCCSHHHHH-HH---------HT
T ss_pred CEEEEECCCCH-----------HHHHHHHHHHHHcCCEEeCCCCCCCeEEEEcCCC-cchHHHHHH-HH---------hc
Confidence 67899999752 2456899999999999999998 69999997632 111222222 22 13
Q ss_pred ccEEeccchHHHHHHcCCccCCCCCCCC
Q 001083 885 KLHVVRSQWLEDCLAKEQKSEEYEYSLK 912 (1160)
Q Consensus 885 ~~~IVt~~Wl~eci~~~~~v~Ee~Y~v~ 912 (1160)
...||+++||.+|+++++.++|++|.+.
T Consensus 60 g~~IV~~~Wl~~c~~~~~~~~e~~y~~~ 87 (210)
T 2nte_A 60 GCWILKFEWVKACLRRKVCEQEEKYEIP 87 (210)
T ss_dssp TCEEEETHHHHHHHHHTSCCCGGGTBCT
T ss_pred CCEEecHHHHHHHHHcCCcCChhhccCC
Confidence 5689999999999999999999999986
No 66
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=98.40 E-value=3.8e-07 Score=84.39 Aligned_cols=75 Identities=12% Similarity=0.180 Sum_probs=68.0
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhcCC-CeeecchHHHHHhc
Q 001083 655 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQ 730 (1160)
Q Consensus 655 s~lF~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~~~~~Th~Ia~~~~~~K~~~a~~~~-~VV~p~WV~dCi~~ 730 (1160)
...|.|+.|||++.... +|++++.+|.++||++....+..++|+|+++..+-|++.|...+ +||+.+|++++++.
T Consensus 5 ~~~l~G~~~v~TG~l~~-~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~lgI~Ii~E~~f~~~l~~ 80 (92)
T 1l7b_A 5 GEALKGLTFVITGELSR-PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLEA 80 (92)
T ss_dssp CCSSTTCEEECSTTTTS-CHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHCSSSCCEEHHHHHHHHHH
T ss_pred CCCcCCcEEEEecCCCC-CHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHHHcCCcEEeHHHHHHHHHh
Confidence 46799999998876655 99999999999999999999888899999988889999999998 99999999999963
No 67
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=98.39 E-value=3.6e-07 Score=98.66 Aligned_cols=87 Identities=16% Similarity=0.223 Sum_probs=60.4
Q ss_pred CcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCC-----ceEEEEecC----CChhhHhhh-cCC-CeeecchH
Q 001083 656 SIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNS-----VTHCVAADN----KGLKYEAAK-RRG-DVIHYSWV 724 (1160)
Q Consensus 656 ~lF~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~~~~-----~Th~Ia~~~----~~~K~~~a~-~~~-~VV~p~WV 724 (1160)
.+|+|+.||+.+......+++|+.+|..+||+++..+... ++|+|+... ...+++.+. ..+ +||+++||
T Consensus 116 ~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~Wl 195 (229)
T 1l0b_A 116 KLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDWV 195 (229)
T ss_dssp -CCTTCEEEECSCCSSSCHHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC-------------------CEEETHHH
T ss_pred hhhcCceEEEEecCCCCCHHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccchhhhHHHHHHHcCCeEeehhHH
Confidence 7999999999765455679999999999999999887532 466555442 233555442 344 99999999
Q ss_pred HHHHhcCccCCCCcccccc
Q 001083 725 LDCCSQKKLLQLQPKYYLH 743 (1160)
Q Consensus 725 ~dCi~~~~lLp~~p~~~l~ 743 (1160)
+|||.+++++|+++| ++.
T Consensus 196 ldsI~~~~~~~~~~Y-~l~ 213 (229)
T 1l0b_A 196 LDSISVYRCRDLDAY-LVQ 213 (229)
T ss_dssp HHHHHTTSCCCGGGG-BCC
T ss_pred HHHHhcCCcCCccce-Ecc
Confidence 999999999998876 443
No 68
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=98.36 E-value=4.2e-07 Score=96.99 Aligned_cols=87 Identities=14% Similarity=0.161 Sum_probs=63.0
Q ss_pred CccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCCCceEEEEecCCCcccchhhhHHHHHHHhhhh
Q 001083 801 WSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHL 880 (1160)
Q Consensus 801 ~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~ 880 (1160)
.....+++|+|+|+.. + .+...|+.+||++++++++|||+|++... +. .+ +...+.
T Consensus 7 ~~~~~~~~v~~sG~~~----~----------~~~~~i~~lGg~~~~~~~~~THlI~~~~~-rt--~K-~l~a~~------ 62 (209)
T 2etx_A 7 NQESTAPKVLFTGVVD----A----------RGERAVLALGGSLAGSAAEASHLVTDRIR-RT--VK-FLCALG------ 62 (209)
T ss_dssp -----CCEEEECSSCC----H----------HHHHHHHHTTCEECSSTTTCSEEECSSCC-CS--HH-HHHHHH------
T ss_pred cccCCCcEEEEeCCCc----H----------HHHHHHHHCCCEEeCCCCCceEEEECCCC-CC--HH-HHHHHh------
Confidence 3457899999999863 1 23678999999999999999999997532 22 22 112221
Q ss_pred ccCCccEEeccchHHHHHHcCCccCCCCCCCCCC
Q 001083 881 LWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPT 914 (1160)
Q Consensus 881 ~~~~~~~IVt~~Wl~eci~~~~~v~Ee~Y~v~~~ 914 (1160)
....||+++||.+|+++++.++|++|.+..+
T Consensus 63 ---~g~~IV~~~Wl~~~~~~~~~l~e~~y~~~~~ 93 (209)
T 2etx_A 63 ---RGIPILSLDWLHQSRKAGFFLPPDEYVVTDP 93 (209)
T ss_dssp ---HTCCEECTHHHHHHHHHTSCCCSGGGBCCCH
T ss_pred ---cCCccccHHHHHHHHHcCCCCChhhccccCh
Confidence 2457999999999999999999999988643
No 69
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=98.26 E-value=1.8e-06 Score=82.34 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=68.7
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCC-hhhHhhhcCC-CeeecchHHHHHhcC
Q 001083 655 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKG-LKYEAAKRRG-DVIHYSWVLDCCSQK 731 (1160)
Q Consensus 655 s~lF~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~~~~~Th~Ia~~~~~-~K~~~a~~~~-~VV~p~WV~dCi~~~ 731 (1160)
...|.|+.|||++.....++++++.+|..+||++....+..++|+|+++..+ -|+..|...+ +||+.+|++++++.+
T Consensus 30 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~sK~~kA~~lgI~Ii~E~~f~~ll~~~ 108 (109)
T 2k6g_A 30 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRNL 108 (109)
T ss_dssp TTTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCHHHHHHHHHHTCEEECHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcccCCceEEEECCCCChHHHHHHHHcCCeEEeHHHHHHHHHhC
Confidence 4579999999987766789999999999999999999988889999988777 7999898888 999999999999764
No 70
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=98.22 E-value=2.2e-06 Score=94.76 Aligned_cols=88 Identities=16% Similarity=0.195 Sum_probs=61.9
Q ss_pred CCccCCCeEEEEc-cCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCCC-ceEEEEecCCCcccchhhhHHHHHHHh
Q 001083 800 KWSCFHGCCIYFY-HSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN-ATHVVVLSVLGYDVNFNSLTESFTARE 877 (1160)
Q Consensus 800 ~~~lF~gc~~yl~-~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~-vTHVVV~~~~~~~~~~~~l~~~l~~~~ 877 (1160)
...+|+|+.||+. +... . .+..|..+|..+||+++.+++. +||||++. . ...+ +..+
T Consensus 7 ~s~lF~G~~f~V~sg~~~---~--------~k~~L~~lI~~~GG~v~~n~~~~t~~iIa~~-~--~~k~---~~~~---- 65 (263)
T 3ii6_X 7 ISNIFEDVEFCVMSGTDS---Q--------PKPDLENRIAEFGGYIVQNPGPDTYCVIAGS-E--NIRV---KNII---- 65 (263)
T ss_dssp CCCTTTTCEEEECCCC-----C--------CHHHHHHHHHHTTCEECSSCCTTEEEEECSS-C--CHHH---HHHH----
T ss_pred CcccCCCeEEEEEcCCCC---C--------CHHHHHHHHHHcCCEEEecCCCCEEEEEeCC-C--CHHH---HHHH----
Confidence 4569999999985 4322 1 2468889999999999988876 45556542 2 1112 2111
Q ss_pred hhhccCCccEEeccchHHHHHHcCCccCCCCCCCC
Q 001083 878 KHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLK 912 (1160)
Q Consensus 878 ~~~~~~~~~~IVt~~Wl~eci~~~~~v~Ee~Y~v~ 912 (1160)
..+...||++.||.+|+++++++|.+.|.+-
T Consensus 66 ----~~g~~~IV~p~Wv~Dci~~~~llp~~p~~~~ 96 (263)
T 3ii6_X 66 ----LSNKHDVVKPAWLLECFKTKSFVPWQPRFMI 96 (263)
T ss_dssp ----HSCSCCEECHHHHHHHHHHTSCCCCCGGGEE
T ss_pred ----hcCCCCEeehHHHHHHHhcCCcCCCCHHHHh
Confidence 1235799999999999999999998888543
No 71
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.18 E-value=1.7e-06 Score=95.41 Aligned_cols=101 Identities=11% Similarity=0.119 Sum_probs=68.9
Q ss_pred CCccCCCeEEEEccCCCCCCC--------------h-hHHH---HHHHHHHHHHHHHhcCCEEEccCCC-------ceEE
Q 001083 800 KWSCFHGCCIYFYHSTEPLSP--------------D-WEVL---LGLALRRLKLEISFHGGKVCNNLAN-------ATHV 854 (1160)
Q Consensus 800 ~~~lF~gc~~yl~~~~~~~~~--------------d-~~~i---~~~~~~~l~~~I~~~GG~v~~~ls~-------vTHV 854 (1160)
...+|.||.|+|.++...... | .+.. .......|..+|+.+||++++++++ +||+
T Consensus 12 ~~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~~t~L 91 (259)
T 1kzy_C 12 NKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQCLL 91 (259)
T ss_dssp STTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTCEEEE
T ss_pred CCcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCCCeEE
Confidence 356999999999887531000 0 0000 0013468899999999999998874 4899
Q ss_pred EEecCCCcccchhhhHHHHHHHhhhhccCCccEEeccchHHHHHHcCCccCCCCCCCCC
Q 001083 855 VVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKP 913 (1160)
Q Consensus 855 VV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~IVt~~Wl~eci~~~~~v~Ee~Y~v~~ 913 (1160)
|.+... +. .+.++ .+ ...+.||++.||.+|++.+++++++.|.++.
T Consensus 92 Ia~~~~-rt--~K~l~-al---------a~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~~ 137 (259)
T 1kzy_C 92 IADQHC-RT--RKYFL-CL---------ASGIPCVSHVWVHDSCHANQLQNYRNYLLPA 137 (259)
T ss_dssp EESSCC-CS--HHHHH-HH---------HHTCCEEETHHHHHHHHHTSCCCGGGSBCCC
T ss_pred EcCCCC-Cc--HHHHH-HH---------hcCCCCccHHHHHHHHHcCCcCCHHHccCCC
Confidence 986532 22 22112 22 1357899999999999999999999999864
No 72
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=98.18 E-value=6.2e-07 Score=99.07 Aligned_cols=87 Identities=11% Similarity=0.044 Sum_probs=46.8
Q ss_pred CCCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCC---h----hhHhh-h-c--------C
Q 001083 653 GETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKG---L----KYEAA-K-R--------R 715 (1160)
Q Consensus 653 ~~s~lF~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~~~~~Th~Ia~~~~~---~----K~~~a-~-~--------~ 715 (1160)
....+|+||.||+.+......++-|+.+|..+||+++.+++..+||+|+ +..+ . +++.. . + .
T Consensus 156 ~~~~lF~g~~~yl~~~~~~~~~~~l~~~i~~~GG~v~~~l~~~t~hVV~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (264)
T 1z56_C 156 FPLFLFSNRIAYVPRRKISTEDDIIEMKIKLFGGKITDQQSLCNLIIIP-YTDPILRKDCMNEVHEKIKEQIKASDTIPK 234 (264)
T ss_dssp CCCC--------------------CHHHHHHHTTSCCCCSSSCSEEECC-CSSTTTHHHHSSHHHHTTTTTTTSSSSCCC
T ss_pred CchhhhCCeEEEEecCCCchhHHHHHHHHHHcCCEEecccCCCEEEEEe-CCCccchHHHHHHHHHHHHhhcccccccCC
Confidence 3467999999998654323445667889999999999888754455554 3322 1 12221 1 1 1
Q ss_pred C-CeeecchHHHHHhcCccCCCCccc
Q 001083 716 G-DVIHYSWVLDCCSQKKLLQLQPKY 740 (1160)
Q Consensus 716 ~-~VV~p~WV~dCi~~~~lLp~~p~~ 740 (1160)
. .||+|+||.||++.|+++|.++|.
T Consensus 235 ~~~iV~~~Wv~dci~~~~ll~e~~Y~ 260 (264)
T 1z56_C 235 IARVVAPEWVDHSINENCQVPEEDFP 260 (264)
T ss_dssp CCEEECTHHHHHHHTTSCCCSSCCC-
T ss_pred CCEEecHHHHHHHHHcCCcCCHHHcC
Confidence 2 799999999999999999999863
No 73
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=3.3e-06 Score=80.78 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=68.3
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCC-hhhHhhhcCC-CeeecchHHHHHhcC
Q 001083 655 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKG-LKYEAAKRRG-DVIHYSWVLDCCSQK 731 (1160)
Q Consensus 655 s~lF~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~~~~~Th~Ia~~~~~-~K~~~a~~~~-~VV~p~WV~dCi~~~ 731 (1160)
...|.|+.|||++.....+|++++.+|..+||++....+..++|+|+++..+ -|++.|...+ +||+-+|+++++..+
T Consensus 20 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~sKl~KA~~lgI~IisE~~f~~ll~~~ 98 (112)
T 2ebu_A 20 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTM 98 (112)
T ss_dssp SSSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCSHHHHHHHHHTCEEEEHHHHHHHHHHS
T ss_pred CCCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEeccccCCeeEEEecCCCChHHHHHHHHcCCeEEeHHHHHHHHhhC
Confidence 4579999999987766789999999999999999999988889999987766 7999998888 999999999999754
No 74
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=98.16 E-value=2.8e-06 Score=81.46 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=70.1
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEec---CCChhhHhhhcCC-Ceeecch-------
Q 001083 655 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAAD---NKGLKYEAAKRRG-DVIHYSW------- 723 (1160)
Q Consensus 655 s~lF~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~~~~~Th~Ia~~---~~~~K~~~a~~~~-~VV~p~W------- 723 (1160)
...|.|++|+|++.... +++++.++|..+||++....+..++|+|+++ ..+-|+..|...+ +||+-+|
T Consensus 8 ~~~l~G~~~ViTG~l~~-~R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~~l~~~~~~ 86 (113)
T 2cok_A 8 DKPLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMNKKMEEVKEANIRVVSEDFLQDVSAS 86 (113)
T ss_dssp CCSSSSCEEEECSCCSS-CHHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCCHHHHHHHHTTCCEECTHHHHHHHSC
T ss_pred CCCcCCCEEEEEecCCC-CHHHHHHHHHHCCCEEcCccccCccEEEECCCCCCCChHHHHHHHCCCcEEeHHHHHHHHhh
Confidence 45799999999876544 8999999999999999999887778888763 2567888898888 9999999
Q ss_pred ---HHHHHhcCccCCCCc
Q 001083 724 ---VLDCCSQKKLLQLQP 738 (1160)
Q Consensus 724 ---V~dCi~~~~lLp~~p 738 (1160)
+.+|+....++||..
T Consensus 87 ~~~~~~~i~k~~i~~w~~ 104 (113)
T 2cok_A 87 TKSLQELFLAHILSSWGA 104 (113)
T ss_dssp CSCHHHHHHHTBCSSCCC
T ss_pred chhHHHHHHHhcCCCCCC
Confidence 777888888888874
No 75
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=98.10 E-value=2.2e-06 Score=83.33 Aligned_cols=92 Identities=14% Similarity=0.186 Sum_probs=71.2
Q ss_pred CCCcccCeEEEEEcCC-CCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhH--------hhh--cCC-Ceeec
Q 001083 654 ETSIFSDMVFYFVNVP-PAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYE--------AAK--RRG-DVIHY 721 (1160)
Q Consensus 654 ~s~lF~G~~F~vv~~~-~~~~k~eL~klI~~~GG~~v~n~~~~~Th~Ia~~~~~~K~~--------~a~--~~~-~VV~p 721 (1160)
.+..|.|+.+||+.-. ....++-|.+++..+||++...+++++||||+.+.....+. .+. ..+ .+|+.
T Consensus 7 ~~~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~s~~~~~~~L~~~~~~l~~~~~~~~lLdi 86 (133)
T 2dun_A 7 GSTRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDACSSEATHVVMEETSAEEAVSWQERRMAAAPPGCTPPALLDI 86 (133)
T ss_dssp SSCSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSSCCTTCCEEEESSCCHHHHHHHHHHHHHHSCTTCCCCEEEEH
T ss_pred CccccCccEEEEecCCcCHHHHHHHHHHHHhcCCEeccccCCCceEEEecCCCHHHHHHHHHHhhcccCcCCCCcEEecc
Confidence 3479999999998532 23357888999999999999999999999998554332222 221 123 79999
Q ss_pred chHHHHHhcCccCCCCcccccccC
Q 001083 722 SWVLDCCSQKKLLQLQPKYYLHLS 745 (1160)
Q Consensus 722 ~WV~dCi~~~~lLp~~p~~~l~~s 745 (1160)
.|+.+|++.|+++|.+.+|+|-..
T Consensus 87 sWltecm~~g~pV~~e~~~~l~~~ 110 (133)
T 2dun_A 87 SWLTESLGAGQPVPVECRHRLEVA 110 (133)
T ss_dssp HHHHHHHHHTSCCCCCTTTSCCCC
T ss_pred HHHHHHHhcCCcCCcccceEeecc
Confidence 999999999999999988887653
No 76
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=98.07 E-value=4.2e-06 Score=91.22 Aligned_cols=92 Identities=21% Similarity=0.297 Sum_probs=65.7
Q ss_pred ccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEcc-----CC----------------------CceEE
Q 001083 802 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNN-----LA----------------------NATHV 854 (1160)
Q Consensus 802 ~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~-----ls----------------------~vTHV 854 (1160)
.+|+||.|||++... .+.+ ....|..+|+.+||++.++ ++ +.|||
T Consensus 1 ~lF~g~~F~ls~~~~-~~~~-------~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~l 72 (241)
T 2vxb_A 1 LIFDDCVFAFSGPVH-EDAY-------DRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFV 72 (241)
T ss_dssp CTTTTEEEEECCCSS-TTSS-------CHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEE
T ss_pred CCCCCcEEEEecCCC-Cchh-------hHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEE
Confidence 379999999999721 1111 2457899999999999886 21 13898
Q ss_pred EEecCCCcccchhhhHHHHHHHhhhhccCCccEEeccchHHHHHHcCCccCCCCCCCCCC
Q 001083 855 VVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPT 914 (1160)
Q Consensus 855 VV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~IVt~~Wl~eci~~~~~v~Ee~Y~v~~~ 914 (1160)
|.+... ... +.++ .+ ...+.||++.||.+|++.+++++.+.|+++..
T Consensus 73 ia~~~~-rt~--K~~~-al---------a~gipiV~~~Wi~dc~~~~~~~~~~~ylL~~~ 119 (241)
T 2vxb_A 73 VSDTFS-RKV--KYLE-AL---------AFNIPCVHPQFIKQCLKMNRVVDFSPYLLASG 119 (241)
T ss_dssp ECSSCC-CCH--HHHH-HH---------HHTCCEECTHHHHHHHHHTSCCCSGGGBBEEE
T ss_pred EcCCCC-CcH--HHHH-HH---------HcCCCEecHHHHHHHHHcCCcCChhhccCCCC
Confidence 887532 222 2111 22 13579999999999999999999999998643
No 77
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=98.05 E-value=8.1e-06 Score=88.63 Aligned_cols=88 Identities=19% Similarity=0.162 Sum_probs=65.0
Q ss_pred CCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEc--cCC-CceEEEEecCCCcccchhhhHHHHHHHhhhh
Q 001083 804 FHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCN--NLA-NATHVVVLSVLGYDVNFNSLTESFTAREKHL 880 (1160)
Q Consensus 804 F~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~--~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~ 880 (1160)
-++.+|.|+|+.. .+...+...|+.+||++++ ..+ +|||||++... +. .+-+. .+
T Consensus 7 ~~~~~~~~Sg~~~-----------~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~-RT--~K~l~-ai------- 64 (235)
T 3al2_A 7 KKQYIFQLSSLNP-----------QERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPL-RN--EKYLA-SV------- 64 (235)
T ss_dssp -CCCEEEEESCCH-----------HHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCC-CS--HHHHH-HH-------
T ss_pred CCCEEEEEcCCCH-----------HHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCC-CC--HHHHH-HH-------
Confidence 3577899998752 1345688999999999986 354 69999998642 22 22111 22
Q ss_pred ccCCccEEeccchHHHHHHcCCccCCCCCCCCCCC
Q 001083 881 LWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTG 915 (1160)
Q Consensus 881 ~~~~~~~IVt~~Wl~eci~~~~~v~Ee~Y~v~~~~ 915 (1160)
.....||+++||.+|+++|+.++|+.|.+..+.
T Consensus 65 --a~G~wIvs~~wl~~s~~~g~~l~E~~ye~~~~~ 97 (235)
T 3al2_A 65 --AAGKWVLHRSYLEACRTAGHFVQEEDYEWGSSS 97 (235)
T ss_dssp --HTTCEEECTHHHHHHHHHTSCCCSGGGBTTSHH
T ss_pred --HcCCcCccHHHHHHHHHcCCCCChhceeecCcc
Confidence 135699999999999999999999999887653
No 78
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=98.01 E-value=5.4e-06 Score=89.09 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=63.1
Q ss_pred CCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCCCceEEEEecCCCcccchhhhHHHHHHHhhhhccC
Q 001083 804 FHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWN 883 (1160)
Q Consensus 804 F~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~~~~ 883 (1160)
=.+.+|.|+|+.+.. ....|+.+||+++++.++|||||++... +. .+ +...+ .
T Consensus 6 ~~~~~v~fSG~~~~~--------------~~~~i~~lGg~v~~~~~~~THlV~~~~~-RT--~K-~l~Ai---------a 58 (220)
T 3l41_A 6 SKRVYITFTGYDKKP--------------SIDNLKKLDMSITSNPSKCTHLIAPRIL-RT--SK-FLCSI---------P 58 (220)
T ss_dssp -CCEEEEECSCSSCC--------------CCGGGGGGTEEECSCTTTCSEEECSSCC-CB--HH-HHHHG---------G
T ss_pred cceEEEEEeccCCCC--------------CcchHhhcceeeccCchhhhhhhhhhHh-hh--cc-eeecC---------C
Confidence 356789999987521 1558999999999999899999997532 22 22 11122 1
Q ss_pred CccEEeccchHHHHHHcCCccCCCCCCCCCC
Q 001083 884 KKLHVVRSQWLEDCLAKEQKSEEYEYSLKPT 914 (1160)
Q Consensus 884 ~~~~IVt~~Wl~eci~~~~~v~Ee~Y~v~~~ 914 (1160)
..+.||+++||.+|++.|+.++|++|.+..+
T Consensus 59 ~g~~IVs~~Wl~~~~~~~~~l~e~~y~l~d~ 89 (220)
T 3l41_A 59 YGPCVVTMDWINSCLKTHEIVDEEPYLLNDP 89 (220)
T ss_dssp GCCEEECHHHHHHHHHHTSCCCSGGGBCCCH
T ss_pred CCCeEEEhHHHHhhhhhhhccccCccccCCc
Confidence 3569999999999999999999999998754
No 79
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=97.85 E-value=6.3e-06 Score=62.66 Aligned_cols=34 Identities=35% Similarity=0.653 Sum_probs=26.9
Q ss_pred hhhhhhhhcccccCCCcccCCChhHHHHHhhccC
Q 001083 747 SSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVD 780 (1160)
Q Consensus 747 ~t~~~~~~~~D~~gDSy~~~~~~~~L~~ll~~i~ 780 (1160)
++++.++.++|+|||||+.++++++|+.+|.+|.
T Consensus 2 ~t~~~~~~n~D~yGDSY~rd~t~~eLk~il~~m~ 35 (37)
T 1ik9_C 2 STKEHFAREYDCYGDSYFIDTDLNQLKEVFSGIK 35 (37)
T ss_dssp ------CCSBCTTSCBSSSCCCHHHHHHHHHTCC
T ss_pred cHHHHHHHhcccccccccCcCCHHHHHHHHHHcc
Confidence 4678889999999999999999999999999885
No 80
>2hvq_A ORF1, hypothetical 37.6 kDa protein in GP24-HOC intergenic region; RNA, ligase, lysine adenylate; HET: APK; 2.40A {Enterobacteria phage T4} PDB: 2hvr_A* 2hvs_A*
Probab=97.64 E-value=0.00012 Score=83.23 Aligned_cols=107 Identities=12% Similarity=0.063 Sum_probs=69.6
Q ss_pred hcCCCcEEEEEecceEEEEEEEeCCEEEEEeCCCCCCCc----chhhHHHH-------HHHhcc---cCceeeceeEEEE
Q 001083 241 KLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE----YGHAMSKI-------IEQNVL---VDRCILDGEMLVW 306 (1160)
Q Consensus 241 ~~~~~~~~~E~K~DGeR~qih~~g~~v~~fSR~g~d~t~----~~~~l~~~-------l~~~~~---~~~~ILDGElv~~ 306 (1160)
.+.+.+|++++|+||.-+-+.+.++++.++||++.-.+. .+..+... +...+. ..+++|-||++..
T Consensus 25 ~l~~~~vvvtEKlDG~N~~i~~~~~~i~~~sR~~~l~~~~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~i~GE~~G~ 104 (335)
T 2hvq_A 25 GLTGGEWVAREXIHGTNFSLIIERDKVTCAKRTGPILPAEDFFGYEIILKNYADSIKAVQDIMETSAVVSYQVFGEFAGP 104 (335)
T ss_dssp TCSCSCEEEEECCSSEEEEEEEETTEEEEEETTEECCTTCCCTTTHHHHHHHHHHHHHHHTTHHHHTEEEEEEEEEEESB
T ss_pred ccCCCcEEEEEEecCcceEEEEECCEEEEecCCcccCCccccchHHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEccC
Confidence 355678999999999999999999999999999864321 11112211 111111 2689999999863
Q ss_pred eCCCCcccccccHHHHHHHhccCCCCCCccEEEEEEeee-ecCCcccccCCHHHHHHHHHHh
Q 001083 307 DTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVL-YVGDTSVIHQSLKERHELLQKV 367 (1160)
Q Consensus 307 d~~~~~~~pF~~lq~i~~~~r~~~~~~~~~~~~~vFDiL-~lng~sl~~~pl~eRr~~L~~~ 367 (1160)
. + ..++.-. . ..|++|||. ..++..-.-+|+.+|+++++.+
T Consensus 105 ~-----I-------------q~~i~Y~-~-~~FyvFDI~~~~~~~~~~~l~~~~~~~l~~~~ 146 (335)
T 2hvq_A 105 G-----I-------------QKNVDYG-D-KDFYVFDIIVTTESGDVTYVDDYMMESFCNTF 146 (335)
T ss_dssp T-----T-------------BSSCCCC-S-SEEEEEEEEEEETTCCEEECCHHHHHHHHHHH
T ss_pred c-----c-------------cCCcccC-C-CeEEEEEEEEecCCCceeeCCHHHHHHHHHHc
Confidence 2 0 0111111 2 479999997 4343222347999999999886
No 81
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.60 E-value=3.5e-05 Score=70.14 Aligned_cols=79 Identities=16% Similarity=0.322 Sum_probs=57.5
Q ss_pred CCCcccCeEEEEEcCCC----CCChHHHHHHHHHcCCEEEecCCCCc--eEEEEecCCChhhHhhhcCCCeeecchHHHH
Q 001083 654 ETSIFSDMVFYFVNVPP----AYSLDSLHKMVVENGGTFSMNLNNSV--THCVAADNKGLKYEAAKRRGDVIHYSWVLDC 727 (1160)
Q Consensus 654 ~s~lF~G~~F~vv~~~~----~~~k~eL~klI~~~GG~~v~n~~~~~--Th~Ia~~~~~~K~~~a~~~~~VV~p~WV~dC 727 (1160)
...+|+|+.||+-.+.. ....++|+++|..|||+++..+.... .+.|++--++. .-|.|+|.+|.+|
T Consensus 8 ~~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpyN~t-------~LpTVtpTYI~aC 80 (106)
T 2l42_A 8 SGPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRESKENVFIVSPYNHT-------NLPTVTPTYIKAC 80 (106)
T ss_dssp SSCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTTCCC-------SSSBCCTTHHHHH
T ss_pred cCccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCcccccCCeEEEeCCCCC-------CCccccHHHHHHH
Confidence 34679999999854432 23589999999999999987764221 23333221111 1299999999999
Q ss_pred HhcCccCCCCcc
Q 001083 728 CSQKKLLQLQPK 739 (1160)
Q Consensus 728 i~~~~lLp~~p~ 739 (1160)
|..+.||++.+|
T Consensus 81 ~~~nTLLnv~~Y 92 (106)
T 2l42_A 81 CQSNSLLNMENY 92 (106)
T ss_dssp HHSTTSCGGGGC
T ss_pred HhcCceeccccc
Confidence 999999999986
No 82
>1s68_A RNA ligase 2; ribonucleic acid ligase, RNA repair; HET: AMP; 1.90A {Enterobacteria phage T4} SCOP: d.142.2.4
Probab=97.60 E-value=0.00022 Score=77.96 Aligned_cols=107 Identities=14% Similarity=0.065 Sum_probs=69.3
Q ss_pred hcCCCcEEEEEecceEEEEEEEeCCEEEEEeCCCCCCCc----chhhHHH-------HHHHhcc---cCceeeceeEEEE
Q 001083 241 KLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE----YGHAMSK-------IIEQNVL---VDRCILDGEMLVW 306 (1160)
Q Consensus 241 ~~~~~~~~~E~K~DGeR~qih~~g~~v~~fSR~g~d~t~----~~~~l~~-------~l~~~~~---~~~~ILDGElv~~ 306 (1160)
.+.+.+|++++|+||.-+-|...++++.++||++.-.+. .+..+.. .+.+.+. ..+++|-||++..
T Consensus 24 ~~~~~~vvvtEKldG~N~~i~~~~~~i~~~sR~~~l~~~~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~GE~~G~ 103 (249)
T 1s68_A 24 GLTGGEWVAREKIHGTNFSLIIERDKVTCAKRTGPILPAEDFFGYEIILKNYADSIKAVQDIMETSAVVSYQVFGEFAGP 103 (249)
T ss_dssp TCSCSCEEEEECCCSEEEEEEEESSCEEEEETTEECCTTCCCTTTHHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEEST
T ss_pred ccCCCCEEEEEEECCcceEEEEECCEEEEEeCCcccCCCCccchHHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEEccc
Confidence 355678999999999999999998899999999864321 1111111 1111111 3789999999863
Q ss_pred eCCCCcccccccHHHHHHHhccCCCCCCccEEEEEEeee-ecCCcccccCCHHHHHHHHHHh
Q 001083 307 DTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVL-YVGDTSVIHQSLKERHELLQKV 367 (1160)
Q Consensus 307 d~~~~~~~pF~~lq~i~~~~r~~~~~~~~~~~~~vFDiL-~lng~sl~~~pl~eRr~~L~~~ 367 (1160)
.-..+ ..+. . ..|++|||. ..++....-+++.+|+++++.+
T Consensus 104 ~Iq~~----------------v~Y~---~-~~FyvFdI~~~~~~g~~~~l~~~~~~~l~~~~ 145 (249)
T 1s68_A 104 GIQKN----------------VDYC---D-KDFYVFDIIVTTESGDVTYVDDYMMESFCNTF 145 (249)
T ss_dssp TTSSS----------------CCCC---S-CEEEEEEEEEEETTCCEEECCHHHHHHHHHHH
T ss_pred cccCC----------------cccC---C-CeEEEEEEEEecCCCccccCCHHHHHHHHHHC
Confidence 20000 0111 2 479999996 4333222356999999999885
No 83
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=97.58 E-value=5.9e-05 Score=85.11 Aligned_cols=173 Identities=20% Similarity=0.223 Sum_probs=105.2
Q ss_pred cEEEEEecceEEEEEEEeCCE-EEEEeC----CCCCCCcchhhHHHHHHHhc-ccCceeeceeEEEEeCC----------
Q 001083 246 EVVIECKFDGDRIQIHKNGSE-IHYFSR----SFLDHSEYGHAMSKIIEQNV-LVDRCILDGEMLVWDTS---------- 309 (1160)
Q Consensus 246 ~~~~E~K~DGeR~qih~~g~~-v~~fSR----~g~d~t~~~~~l~~~l~~~~-~~~~~ILDGElv~~d~~---------- 309 (1160)
.|++|+|+||..+.+.+.+|. ++..|| .|+|+|.....|... -..+ .+..+.+-||++.-...
T Consensus 114 ~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~I-P~~L~~p~~leVRGEv~m~~~~F~~lN~~~~~ 192 (332)
T 1ta8_A 114 AYCCELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSV-PMRLTEPISVEVRGECYMPKQSFVALNEEREE 192 (332)
T ss_dssp CEEEEEEECSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHTTCTTS-CSBCSSCCCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred eEEEeeeecceEEEEEEECCEEEEEEcCCCCccchhHHHHHHHhcCC-ccccCCCCeEEEEEEEEEEHHHHHHHHHHHHh
Confidence 599999999999999998887 799999 688888632221110 0011 13458999999873210
Q ss_pred CCcccccccHHHHH-HHhccCCCC---CCccEEEEEEeeeecCCcccccCCHHHHHHHHHHhhccCCCcceeeccCCCCC
Q 001083 310 LNRFAEFGSNQEIA-KAARDGLSS---DRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLN 385 (1160)
Q Consensus 310 ~~~~~pF~~lq~i~-~~~r~~~~~---~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~~~ 385 (1160)
.|. .+|..-+..+ ...|. .++ ...++.|++|++...+|.. -.+..++.+.|..+--++...
T Consensus 193 ~g~-~~faNPRNaAAGsLrq-ld~~ita~R~L~ff~y~i~~~~~~~--~~t~~e~l~~L~~~GF~v~~~----------- 257 (332)
T 1ta8_A 193 NGQ-DIFANPRNAAAGSLRQ-LDTKIVAKRNLNTFLYTVADFGPMK--AKTQFEALEELSAIGFRTNPE----------- 257 (332)
T ss_dssp TTC-CCCSSHHHHHHHHHTC-SBHHHHHTSCCEEEEEEESCCTTCC--CSBHHHHHHHHHHTTCCCCTT-----------
T ss_pred cCC-ccccChHHHHHHHHHc-cChhhHhhCCCEEEEEecccccCCC--CCCHHHHHHHHHHcCCCCCCc-----------
Confidence 000 1232212111 11111 111 0124999999996444432 268999999999874333211
Q ss_pred ccccCCCCCccceecCCHHHHHHHHHHHHHc------CCceEEEecCCCCCcC----CCCCCCe---EEEccc
Q 001083 386 SHVRPQGEPCWSLVAHNVDEVEKFFKETIEN------RDEGIVLKDLGSKWEP----GDRSGKW---LKLKPE 445 (1160)
Q Consensus 386 ~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~------g~EGlVlK~~ds~Y~p----GkRs~~W---lKlKpe 445 (1160)
...+.+.+++.++++.+.+. .-.|||+|--+..|.. ..|.+.| +|+.++
T Consensus 258 -----------~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~tsk~PRWAiAyKfpae 319 (332)
T 1ta8_A 258 -----------RQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFALQDELGFTVKAPRWAIAYKFPPE 319 (332)
T ss_dssp -----------CEEESSHHHHHHHHHHHHHTGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEEECC--
T ss_pred -----------ceEeCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEecCHHHHHHhCCcCCCCCceeEecCCCc
Confidence 23467899999999998765 6689999976655542 3456677 455553
No 84
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.39 E-value=8.8e-05 Score=67.57 Aligned_cols=88 Identities=14% Similarity=0.196 Sum_probs=64.6
Q ss_pred CccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCCC--ceEEEEecCCCcccchhhhHHHHHHHhh
Q 001083 801 WSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN--ATHVVVLSVLGYDVNFNSLTESFTAREK 878 (1160)
Q Consensus 801 ~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~--vTHVVV~~~~~~~~~~~~l~~~l~~~~~ 878 (1160)
...|+|..|||...+.....- ...+.|.++|+.+||+|...+.. ..++.|.++-
T Consensus 9 ~~vF~g~~Fyin~d~~a~ds~------~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpy------------------ 64 (106)
T 2l42_A 9 GPPLSNMKFYLNRDADAHDSL------NDIDQLARLIRANGGEVLDSKPRESKENVFIVSPY------------------ 64 (106)
T ss_dssp SCSSCCCCBEECCSSSCSSCS------STHHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTT------------------
T ss_pred CccccCcEEEEcCCCccchhh------hHHHHHHHHHHhcCcEEhhhCcccccCCeEEEeCC------------------
Confidence 457999999999854311111 12578999999999999999863 3333333221
Q ss_pred hhccCCccEEeccchHHHHHHcCCccCCCCCCCCCCC
Q 001083 879 HLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTG 915 (1160)
Q Consensus 879 ~~~~~~~~~IVt~~Wl~eci~~~~~v~Ee~Y~v~~~~ 915 (1160)
....+..|++.+|.+|+..+++++-++|+++...
T Consensus 65 ---N~t~LpTVtpTYI~aC~~~nTLLnv~~YLvp~d~ 98 (106)
T 2l42_A 65 ---NHTNLPTVTPTYIKACCQSNSLLNMENYLVPYDN 98 (106)
T ss_dssp ---CCCSSSBCCTTHHHHHHHSTTSCGGGGCCBCSCC
T ss_pred ---CCCCCccccHHHHHHHHhcCceecccccccCchh
Confidence 1235678999999999999999999999998765
No 85
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=97.37 E-value=0.00014 Score=81.66 Aligned_cols=173 Identities=19% Similarity=0.178 Sum_probs=104.2
Q ss_pred CcEEEEEecceEEEEEEEeCC-EEEEEeC----CCCCCCcchhhHHHHHHHhc-ccCceeeceeEEEEeCC---------
Q 001083 245 KEVVIECKFDGDRIQIHKNGS-EIHYFSR----SFLDHSEYGHAMSKIIEQNV-LVDRCILDGEMLVWDTS--------- 309 (1160)
Q Consensus 245 ~~~~~E~K~DGeR~qih~~g~-~v~~fSR----~g~d~t~~~~~l~~~l~~~~-~~~~~ILDGElv~~d~~--------- 309 (1160)
-.|++|+|+||..+.+.+.+| -++..|| .|+|+|.....|... -..+ .+..+.+-||++.-...
T Consensus 107 ~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~I-P~~L~~p~~levRGEv~m~~~~F~~lN~~~~ 185 (318)
T 1b04_A 107 AAYVCELAIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSL-PLRLKEPVSLEARGEAFMPKASFLRLNEERK 185 (318)
T ss_dssp CCEEEEEEESSEEEEEEEETTEEEEEEECTTSSCEEBCHHHHHTCTTS-CSBCSSCCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred ceEEEEEecccEEEEEEEECCEEEEEEccCCCcccHHHHHhHHHhcCC-CcccCCCCeEEEEEEEEEEHHHHHHHHHHHH
Confidence 359999999999999999877 4789999 788888632221110 0011 13458899999873210
Q ss_pred -CCcccccccHHHHH-HHhccCCCC---CCccEEEEEEeeeecCCcccccCCHHHHHHHHHHhhccCCCcceeeccCCCC
Q 001083 310 -LNRFAEFGSNQEIA-KAARDGLSS---DRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGL 384 (1160)
Q Consensus 310 -~~~~~pF~~lq~i~-~~~r~~~~~---~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~~ 384 (1160)
.|. .+|..-+..+ ...|. .++ ...++.|++|++...+|.. -.+..++.+.|..+--++...
T Consensus 186 ~~g~-~~faNpRNaAAGsLrq-ld~~ita~R~L~ff~y~~~~~~~~~--~~t~~e~l~~L~~~Gf~v~~~---------- 251 (318)
T 1b04_A 186 ARGE-ELFANPRNAAAGSLRQ-LDPKVAASRQLDLFVYGLADAEALG--IASHSEALDYLQALGFKVNPE---------- 251 (318)
T ss_dssp HC---CCCSCHHHHHHHHHHS-SCHHHHHHTCCEEEEEEETTTTTTT--CCBHHHHHHHHHHTTCCCCTT----------
T ss_pred HcCC-CccchhhHHHHHHHHc-cChhhHhhCCCEEEEEecccccCCC--CCCHHHHHHHHHHcCCCCCCc----------
Confidence 000 1232211111 11111 111 0124999999996433422 268999999999874333211
Q ss_pred CccccCCCCCccceecCCHHHHHHHHHHHHH------cCCceEEEecCCCCCcC----CCCCCCe---EEEcc
Q 001083 385 NSHVRPQGEPCWSLVAHNVDEVEKFFKETIE------NRDEGIVLKDLGSKWEP----GDRSGKW---LKLKP 444 (1160)
Q Consensus 385 ~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~------~g~EGlVlK~~ds~Y~p----GkRs~~W---lKlKp 444 (1160)
...+.+.+++.++++.+.+ -.-.|||+|--+-.|.. ..|.+.| +|+.+
T Consensus 252 ------------~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~t~k~PRWAiA~Kfpa 312 (318)
T 1b04_A 252 ------------RRRCANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDSFAQQRALGATAKSPRWAIAYKFPA 312 (318)
T ss_dssp ------------CEEESSHHHHHHHHHHHHHHSTTCSSCEEEEEEEECBHHHHHHHCCCSSSCTTEEEEECCC
T ss_pred ------------ceEeCCHHHHHHHHHHHHHHHhhCCCCCCcEEEEecCHHHHHHhCCcCCCCCceeeecCCc
Confidence 2346789999999998865 35589999976655442 3456677 45544
No 86
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=97.32 E-value=0.002 Score=69.08 Aligned_cols=167 Identities=14% Similarity=0.164 Sum_probs=102.0
Q ss_pred ChHHHH-HHHHHcCCEEEecCC--CCceEEEEecC-CChhhHhhhcCCC---eeecchHHHHHhc---Cc------cCCC
Q 001083 673 SLDSLH-KMVVENGGTFSMNLN--NSVTHCVAADN-KGLKYEAAKRRGD---VIHYSWVLDCCSQ---KK------LLQL 736 (1160)
Q Consensus 673 ~k~eL~-klI~~~GG~~v~n~~--~~~Th~Ia~~~-~~~K~~~a~~~~~---VV~p~WV~dCi~~---~~------lLp~ 736 (1160)
.+++.. +.+...|=.++++.. ..++|+||=.. .|.||-.+...+| ||+|+||.+|++. ++ ++++
T Consensus 34 ~~~~~D~~~Lr~LGI~Iv~d~~~~~~~n~LiAPkilRT~KFL~sLa~~P~~~il~p~FI~~~Lk~ih~~~~~~~~~~l~~ 113 (256)
T 3t7k_A 34 GFNEVDIEILNQLGIKIFDNIKETDKLNCIFAPKILRTEKFLKSLSFEPLKFALKPEFIIDLLKQIHSKKDKLSQININL 113 (256)
T ss_dssp CCCHHHHHHHHHTTEEECSSCCGGGCCCEEECSSCCCBHHHHHHTTSTTCCEEECTHHHHHHHHHHC-------CCCCCS
T ss_pred ccCHHHHHHHHHcCeEEEecCcccCCCCEEEcCchhhHHHHHHHhccCccceEeCHHHHHHHHHHhhcCCcccccccCCh
Confidence 444444 355778888888884 25888886332 6788877777765 9999999999987 76 6666
Q ss_pred CcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhhHHhhhcCCCCCCccCCCe---EEEEcc
Q 001083 737 QPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGC---CIYFYH 813 (1160)
Q Consensus 737 ~p~~~l~~s~~t~~~~~~~~D~~gDSy~~~~~~~~L~~ll~~i~~~~~~~~i~~l~~~~~~~~~~~lF~gc---~~yl~~ 813 (1160)
++|.+ .+++.+.+ .+ . ..+..+|.++ +|++..
T Consensus 114 ~dY~L-----------------------~d~~~E~l----~r-~-----------------~~~gkLf~~~~I~ciNls~ 148 (256)
T 3t7k_A 114 FDYEI-----------------------NGINESII----SK-T-----------------KLPTKVFERANIRCINLVN 148 (256)
T ss_dssp STTBC-----------------------TTCCHHHH----HH-T-----------------TSSSCHHHHTTCCEEEEET
T ss_pred hhccC-----------------------CCcchhHH----hh-h-----------------ccccccccCCcceeeeecc
Confidence 65422 12222222 11 0 1246689998 666676
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccC-----C--C--------------ceEEEEecCCCcccchhhhHHH
Q 001083 814 STEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNL-----A--N--------------ATHVVVLSVLGYDVNFNSLTES 872 (1160)
Q Consensus 814 ~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~l-----s--~--------------vTHVVV~~~~~~~~~~~~l~~~ 872 (1160)
.-+.. .+.++.++..|||.=+..+ . + ..+|++.+..++ .+..++.
T Consensus 149 dI~GG-----------~e~issIleahG~~~~~~l~~~~~~~~dl~~n~~~~~~~~~~~~~ILia~K~~q---~k~Fkk~ 214 (256)
T 3t7k_A 149 DIPGG-----------VDTIGSVLKAHGIEKINVLRSKKCTFEDIIPNDVSKQENGGIFKYVLIVTKASQ---VKKFTKL 214 (256)
T ss_dssp TCTTC-----------HHHHHHHHHHTTCCEEEEECTTTCCGGGCCCCC--------CCSEEEECSCHHH---HHHHHHH
T ss_pred CCCCC-----------HHHHHHHHHHcCCceeeecccccccHHHhhhccccccccCCCCCEEEEEccHHH---HHHHHHH
Confidence 54321 3578899999999543322 1 1 347777654322 2222222
Q ss_pred HHHHhhhhccCCccEEeccchHHHHHHcCC
Q 001083 873 FTAREKHLLWNKKLHVVRSQWLEDCLAKEQ 902 (1160)
Q Consensus 873 l~~~~~~~~~~~~~~IVt~~Wl~eci~~~~ 902 (1160)
+. ....+...-+|..+|...||....
T Consensus 215 ~~----~~~~n~~~lvveWdWCVksIF~le 240 (256)
T 3t7k_A 215 IN----DRDKNETILIVEWNWCVESIFHLN 240 (256)
T ss_dssp HH----HHSTTSCEEEECHHHHHHHHHTTS
T ss_pred hh----cccccceEEEEEcHHHHHHHhhee
Confidence 21 112346789999999999998764
No 87
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae}
Probab=97.08 E-value=0.0007 Score=75.91 Aligned_cols=155 Identities=19% Similarity=0.200 Sum_probs=92.1
Q ss_pred CCCcEEEEEecceEEEEEEEeCCE-EEEEeCC----CCCCCcchhhHHHHHHHhc-ccCceeeceeEEEEeCC-------
Q 001083 243 HGKEVVIECKFDGDRIQIHKNGSE-IHYFSRS----FLDHSEYGHAMSKIIEQNV-LVDRCILDGEMLVWDTS------- 309 (1160)
Q Consensus 243 ~~~~~~~E~K~DGeR~qih~~g~~-v~~fSR~----g~d~t~~~~~l~~~l~~~~-~~~~~ILDGElv~~d~~------- 309 (1160)
....|++|+|+||.-+.+.+.+|. ++.+||. |.|+|+....+.. |-..+ ....+.+=||++.-...
T Consensus 100 ~~~~~~~epKiDGlavsL~Y~~G~L~~a~TRGDG~~GeDiT~n~~tI~~-IP~~l~~~~~levRGEv~m~~~~F~~~n~~ 178 (305)
T 4glw_A 100 AHPTYICELKIDGLSISLTYEKGILVAGVTRGDGSIGENITENLKRVKD-IPLTLPEELDITVRGECYMPRASFDQVNQA 178 (305)
T ss_dssp SSCCEEEEEEECSEEEEEEEETTEEEEEEECTTSSEEEECHHHHTTSTT-SCSBCSSCCCEEEEEEEECCHHHHHHHHHH
T ss_pred CCCcEEEEeeecceEEEEEEeCCeEEEEEecCCCcchhhHHHHHhhccC-CcccCCCcccccccceEEeehhhHHHHHHH
Confidence 445799999999999999887775 7899998 7888852211110 00011 13457888998862110
Q ss_pred ---CCcccccccHHHHH-HHhccCCCC---CCccEEEEEEeeeecCCcccccCCHHHHHHHHHHhhccCCCcceeeccCC
Q 001083 310 ---LNRFAEFGSNQEIA-KAARDGLSS---DRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDH 382 (1160)
Q Consensus 310 ---~~~~~pF~~lq~i~-~~~r~~~~~---~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~ 382 (1160)
.| -.+|..-+..+ ...|. .++ ...++.|++|++...+|. ....++.+.|.++-=++..
T Consensus 179 ~~~~g-~~~faNpRNaaAGslrq-~d~~~~~~r~L~f~~y~~~~~~~~----~s~~e~l~~L~~~Gf~~~~--------- 243 (305)
T 4glw_A 179 RQENG-EPEFANPRNAAAGTLRQ-LDTAVVAKRNLATFLYQEASPSTR----DSQEKGLKYLEQLGFVVNP--------- 243 (305)
T ss_dssp HHHTT-CCCCSSHHHHHHHHHSS-SBHHHHHHSCCEEEEEEESSSCSS----SBHHHHHHHHHHHTCCCCC---------
T ss_pred HHhcC-CccchhhhHHHhhhhhc-cCchhhhhhcceEEEeeecccccc----chHHHHHHHHHhCCCccCC---------
Confidence 00 01232222211 11111 111 012389999999876653 3678899999887322111
Q ss_pred CCCccccCCCCCccceecCCHHHHHHHHHHHHHcC----C--ceEEEecC
Q 001083 383 GLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENR----D--EGIVLKDL 426 (1160)
Q Consensus 383 ~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g----~--EGlVlK~~ 426 (1160)
....+.+.+++.++++++.+.+ + .|||+|--
T Consensus 244 -------------~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGiVikvn 280 (305)
T 4glw_A 244 -------------KRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVN 280 (305)
T ss_dssp -------------CCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEEC
T ss_pred -------------ceEEeCCHHHHHHHHHHHHHHhhcCCCCCCeEEEEEe
Confidence 1235678899999988876542 3 39999943
No 88
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=96.88 E-value=0.0026 Score=77.11 Aligned_cols=225 Identities=18% Similarity=0.241 Sum_probs=126.9
Q ss_pred CcEEEEEecceEEEEEEEeCCE-EEEEeCC----CCCCCcchhhHHHHHHHhc----ccCceeeceeEEEEeCC------
Q 001083 245 KEVVIECKFDGDRIQIHKNGSE-IHYFSRS----FLDHSEYGHAMSKIIEQNV----LVDRCILDGEMLVWDTS------ 309 (1160)
Q Consensus 245 ~~~~~E~K~DGeR~qih~~g~~-v~~fSR~----g~d~t~~~~~l~~~l~~~~----~~~~~ILDGElv~~d~~------ 309 (1160)
..|++|+|+||.-+.+.+.+|. ++..||. |+|+|+....+.. +-..+ .+..+.+=||++.-...
T Consensus 108 ~~~~~epKiDGlavsL~Ye~G~Lv~a~TRGDG~~GeDiT~nvrtI~~-IPl~l~~~~~p~~leVRGEv~m~~~~F~~ln~ 186 (586)
T 4glx_A 108 VTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRA-IPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186 (586)
T ss_dssp -CEEEEEEESSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHTTCTT-SCSBCCSSSCCSEEEEEEEEECCHHHHHHHHH
T ss_pred ceEEEEEeecceEEEEEEeCCEEEEEEccCCCcccccHHHHHHhccC-cccccccCCCCceEEEEEEEEEEhhhccccch
Confidence 4689999999999999888776 7899994 7788752211110 00001 13457788999862110
Q ss_pred ----CCcccccccHHHHHH-HhccCCCC---CCccEEEEEEeeeecCCcccccCCHHHHHHHHHHhhccCCCcceeeccC
Q 001083 310 ----LNRFAEFGSNQEIAK-AARDGLSS---DRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPD 381 (1160)
Q Consensus 310 ----~~~~~pF~~lq~i~~-~~r~~~~~---~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~ 381 (1160)
.+ -.+|..-+..+. ..|. .++ ...++.|++|++...+|..+. ....++.+.|.++-=++..
T Consensus 187 ~~~~~g-~~~faNpRNaaAGslrq-ld~~~~a~r~L~f~~y~v~~~~~~~~~-~t~~e~l~~L~~~Gf~v~~-------- 255 (586)
T 4glx_A 187 DARRTG-GKVFANPRNAAAGSLRQ-LDPRITAKRPLTFFCYGVGVLEGGELP-DTHLGRLLQFKKWGLPVSD-------- 255 (586)
T ss_dssp HHHHTT-CCCCSCHHHHHHHHHTC-SCHHHHHTSCCEEEEEEEEEEESSCCC-SBHHHHHHHHHHTTCCCCT--------
T ss_pred hhhhcc-CccchhhHHHHhccccc-cchhhhhccccceeEeeeeeeeccccc-ccHHHHHHHHHHcCCCCcc--------
Confidence 00 012322222111 1111 111 112389999999888775432 4678899999886322211
Q ss_pred CCCCccccCCCCCccceecCCHHHHHHHHHHHHHcC------CceEEEecCCCCCcC--C--CCCCCe---EEEcccccc
Q 001083 382 HGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENR------DEGIVLKDLGSKWEP--G--DRSGKW---LKLKPEYIR 448 (1160)
Q Consensus 382 ~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g------~EGlVlK~~ds~Y~p--G--kRs~~W---lKlKpeY~~ 448 (1160)
....+.+.+++.+++++....+ -.|||+|--+-.+.. | .+++.| +|+.++
T Consensus 256 --------------~~~~~~~~~~~~~~~~~~~~~R~~l~y~iDGiVikvn~~~~~~~lG~ts~~PrwAiA~Kfp~e--- 318 (586)
T 4glx_A 256 --------------RVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARAPRWAVAFKFPAQ--- 318 (586)
T ss_dssp --------------TCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEECCCCC---
T ss_pred --------------ceeeeccHHHHHHHHHHHHHhhhcccccCCceEEEecchhhhhccCCccCCCCeeEEEcccch---
Confidence 1234678899999988876543 379999954433221 2 356677 555543
Q ss_pred CCCcccEEEEEEEeCCCCCCCccceEEEEEecCCCCCCCCceEEEEeeecCCCCHHHHHHHH
Q 001083 449 AGSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVV 510 (1160)
Q Consensus 449 ~g~~lDlvIIG~~~G~Grr~g~~gsfllg~~d~~~~~~~~~~~~s~~kVgtG~sdeel~~l~ 510 (1160)
..--.|.+..|..|| .|.+.-. +..++-.- .+ .+|.++ |..+.++++.+.
T Consensus 319 ---~~~T~v~~I~~qVGR-TG~iTPv--A~lePV~l---~G--~tVsra-TLhN~~~I~~~d 368 (586)
T 4glx_A 319 ---EQMTFVRDVEFQVGR-TGAITPV--ARLEPVHV---AG--VLVSNA-TLHNADEIERLG 368 (586)
T ss_dssp ---EEEEEEEEEEEEECT-TSBEEEE--EEEEEEEE---TT--EEEEEE-ECCCHHHHHHHT
T ss_pred ---hheeEeEEEEEecCC-ceEEEEE--EEEeeEEe---CC--EEEEec-ccCCHHHHHhcC
Confidence 455677777777665 4444332 22222100 01 134443 778888877653
No 89
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=96.81 E-value=0.0019 Score=59.51 Aligned_cols=76 Identities=13% Similarity=0.105 Sum_probs=58.6
Q ss_pred CCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhh
Q 001083 800 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREK 878 (1160)
Q Consensus 800 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~ 878 (1160)
+...|.|.+|+|.|.... . ++.+..+|..+||++...++ .++|||+++..+. .++ ++
T Consensus 4 ~~~~l~G~~~v~TG~l~~---~--------R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gs--K~~---kA------ 61 (92)
T 1l7b_A 4 GGEALKGLTFVITGELSR---P--------REEVKALLRRLGAKVTDSVSRKTSYLVVGENPGS--KLE---KA------ 61 (92)
T ss_dssp CCCSSTTCEEECSTTTTS---C--------HHHHHHHHHHTTCEEESCCSSSCCCBEECSSSST--THH---HH------
T ss_pred CCCCcCCcEEEEecCCCC---C--------HHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCCh--HHH---HH------
Confidence 345799999999997531 2 56888999999999999999 5999999976542 222 11
Q ss_pred hhccCCccEEeccchHHHHHHc
Q 001083 879 HLLWNKKLHVVRSQWLEDCLAK 900 (1160)
Q Consensus 879 ~~~~~~~~~IVt~~Wl~eci~~ 900 (1160)
....++||+.+|+.+++..
T Consensus 62 ---~~lgI~Ii~E~~f~~~l~~ 80 (92)
T 1l7b_A 62 ---RALGVPTLTEEELYRLLEA 80 (92)
T ss_dssp ---HCSSSCCEEHHHHHHHHHH
T ss_pred ---HHcCCcEEeHHHHHHHHHh
Confidence 1357899999999999864
No 90
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=96.63 E-value=0.00012 Score=82.43 Aligned_cols=168 Identities=15% Similarity=0.167 Sum_probs=100.5
Q ss_pred CcEEEEEecceEEEEEEEeCCE-EEEEeC----CCCCCCcchhhHHHHHHHhc-------ccCceeeceeEEEEeCC---
Q 001083 245 KEVVIECKFDGDRIQIHKNGSE-IHYFSR----SFLDHSEYGHAMSKIIEQNV-------LVDRCILDGEMLVWDTS--- 309 (1160)
Q Consensus 245 ~~~~~E~K~DGeR~qih~~g~~-v~~fSR----~g~d~t~~~~~l~~~l~~~~-------~~~~~ILDGElv~~d~~--- 309 (1160)
..|++|+|+||..+.+.+.+|. ++..|| .|+|+|.....|... -..+ .+..+.+-||++.-...
T Consensus 116 ~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~I-P~~L~~g~~~~~p~~leVRGEv~m~~~~F~~ 194 (328)
T 1zau_A 116 AHYLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADV-PERLTPGDDYPVPEVLEVRGEVFFRLDDFQA 194 (328)
T ss_dssp SCEEEEEEECSEEEEEECGGGBCCBCBBCTTSSEECBCHHHHHHSSSC-CSBCCCBTTBCCCSCCEEEEEEBCCHHHHHH
T ss_pred cceEEeeecceEEEEEEEECCEEEEEEccCCCcccHHHHHHHHHhcCC-ChhhccCCcCCCCCeEEEEEEEEEEHHHHHH
Confidence 3599999999999999997664 789999 688888632221110 0011 02347899999864210
Q ss_pred -------CCcccccccHHHHH-HHhccCCCCC---CccEEEEEEeeeecCCcccccCCHHHHHHHHHHhhccCCCcceee
Q 001083 310 -------LNRFAEFGSNQEIA-KAARDGLSSD---RQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETL 378 (1160)
Q Consensus 310 -------~~~~~pF~~lq~i~-~~~r~~~~~~---~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~ 378 (1160)
.|. .+|..-+..+ ...|. .++. ..++.|++|+|...++.. -.+..++.+.|..+-=++..
T Consensus 195 lN~~~~~~g~-~~faNPRNaAAGsLrq-ld~~ita~R~L~f~~y~i~~~~~~~--~~t~~e~l~~L~~~Gf~v~~----- 265 (328)
T 1zau_A 195 LNASLVEEGK-APFANPRNSAAGSLRQ-KDPAVTARRRLRMICHGLGHVEGFR--PATLHQAYLALRAWGLPVSE----- 265 (328)
T ss_dssp HHHSCSSTTS-CCCSSHHHHHHHHHTC-SSHHHHHHSCCBCCCCBCCCCSSCC--CSBHHHHHHHHHTTTCCCCC-----
T ss_pred HHHHHHHcCC-ccccChHHHHHHHHHc-cChhhhhcCcceEEEEeccccCCCC--CCCHHHHHHHHHHcCCCCCC-----
Confidence 010 2343222211 11111 1111 123889999996545432 25788999999886432211
Q ss_pred ccCCCCCccccCCCCCccceecCCHHHHHHHHHHHHHc------CCceEEEecCCCCCcC----CCCCCCe
Q 001083 379 VPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIEN------RDEGIVLKDLGSKWEP----GDRSGKW 439 (1160)
Q Consensus 379 ~p~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~------g~EGlVlK~~ds~Y~p----GkRs~~W 439 (1160)
....+.+.+++.++++.+.+. .-.|||+|--+-.|.. ..|.+.|
T Consensus 266 -----------------~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~t~k~PRW 319 (328)
T 1zau_A 266 -----------------HTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRW 319 (328)
T ss_dssp -----------------CCCCBCHHHHHHHHHHHTTTTCSSCSSCEEEEEEEECBHHHHTTSCBCSSSBSS
T ss_pred -----------------ceEEeCCHHHHHHHHHHHHHHHhcCCCCCceEEEEecCHHHHHHhCccCCCCCc
Confidence 122456789999999988655 5589999966554432 2355666
No 91
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=96.61 E-value=0.0036 Score=70.38 Aligned_cols=156 Identities=19% Similarity=0.219 Sum_probs=93.0
Q ss_pred cEEEEEecceEEEEEEEeCCE-EEEEeCC----CCCCCcchhhHHHHHHHhc----ccCceeeceeEEEEeCC-------
Q 001083 246 EVVIECKFDGDRIQIHKNGSE-IHYFSRS----FLDHSEYGHAMSKIIEQNV----LVDRCILDGEMLVWDTS------- 309 (1160)
Q Consensus 246 ~~~~E~K~DGeR~qih~~g~~-v~~fSR~----g~d~t~~~~~l~~~l~~~~----~~~~~ILDGElv~~d~~------- 309 (1160)
.|++|+|+||.-+.+.+.+|. ++..||. |+|+|.....|.. |-..+ .+..+.+=||++.-...
T Consensus 108 ~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IPl~L~~~~~p~~leVRGEv~m~~~~F~~lN~~ 186 (322)
T 3uq8_A 108 TFCCEPKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRN-VPLQLLTDNPPARLEVRGEVFMPHAGFERLNKY 186 (322)
T ss_dssp EEEEEEEESSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHHTCTT-SCSBCSCSSCCSEEEEEEEEECCHHHHHHHHHH
T ss_pred eEEEEEeeceEEEEEEEeCCEEEEEEecCCCccchhHHHHHHHhcC-CCccccCCCCCceEEEEEEEEeeHHHHHHHHHH
Confidence 599999999999999987775 7899994 7788753211110 00011 13457788998863210
Q ss_pred ---CCcccccccHHHHH-HHhccCCCC---CCccEEEEEEeeeecCCcccccCCHHHHHHHHHHhhccCCCcceeeccCC
Q 001083 310 ---LNRFAEFGSNQEIA-KAARDGLSS---DRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDH 382 (1160)
Q Consensus 310 ---~~~~~pF~~lq~i~-~~~r~~~~~---~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~ 382 (1160)
.| -.+|..-+..+ ...| ..++ ...++.|++|.+...+|..+ .....++.+.|..+-=++..
T Consensus 187 ~~~~g-~~~faNPRNaAAGsLR-qld~~ita~R~L~ff~y~~~~~~~~~~-~~t~~e~l~~L~~~Gf~v~~--------- 254 (322)
T 3uq8_A 187 ALEHN-EKTFANPRNAAAGSLR-QLDPNITSKRPLVLNAYGIGIAEGVDL-PTTHYARLQWLKSIGIPVNP--------- 254 (322)
T ss_dssp HHHTT-CCCCSSHHHHHHHHHT-CSCHHHHTTSCCEEEEEEEEEEESCCC-CSBHHHHHHHHHHTTCCCCT---------
T ss_pred HHHhC-CccccchhHHHHHHHh-hcChhhhhcCccEEEEEeccccCCCCC-CCCHHHHHHHHHHcCCCCCC---------
Confidence 00 01232211111 1111 1111 11239999999987665432 35789999999887322211
Q ss_pred CCCccccCCCCCccceecCCHHHHHHHHHHHHHcCC------ceEEEecCC
Q 001083 383 GLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRD------EGIVLKDLG 427 (1160)
Q Consensus 383 ~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~------EGlVlK~~d 427 (1160)
....+.+.+++.++++.+.+.+. .|||+|--+
T Consensus 255 -------------~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~ 292 (322)
T 3uq8_A 255 -------------EIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIND 292 (322)
T ss_dssp -------------TCEEEESHHHHHHHHHHHHHTTTTTSSCEEEEEEEESB
T ss_pred -------------CcEEeCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEecC
Confidence 13456789999999998865443 699998544
No 92
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=96.51 E-value=0.0066 Score=57.73 Aligned_cols=78 Identities=17% Similarity=0.166 Sum_probs=58.2
Q ss_pred CccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCCC-ceEEEEecCCCcccchhhhHHHHHHHhhh
Q 001083 801 WSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN-ATHVVVLSVLGYDVNFNSLTESFTAREKH 879 (1160)
Q Consensus 801 ~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~-vTHVVV~~~~~~~~~~~~l~~~l~~~~~~ 879 (1160)
...|.|.+|+|.|..... .++.+..+|..+||++....+. ++|||++...+. ..+.++.
T Consensus 30 ~~~l~G~~~v~TG~l~~~----------~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~----sK~~kA~------ 89 (109)
T 2k6g_A 30 ENCLEGLIFVITGVLESI----------ERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ----SKSDKAA------ 89 (109)
T ss_dssp TTTTTTCEEEEESBCSSC----------CHHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCH----HHHHHHH------
T ss_pred CCCCCCCEEEEeeeCCCC----------CHHHHHHHHHHcCCEeeCcccCCceEEEECCCCCh----HHHHHHH------
Confidence 346999999999975321 2567889999999999999994 999999875431 1122211
Q ss_pred hccCCccEEeccchHHHHHHcC
Q 001083 880 LLWNKKLHVVRSQWLEDCLAKE 901 (1160)
Q Consensus 880 ~~~~~~~~IVt~~Wl~eci~~~ 901 (1160)
...++||+.+|+.+++..+
T Consensus 90 ---~lgI~Ii~E~~f~~ll~~~ 108 (109)
T 2k6g_A 90 ---ALGTKIIDEDGLLNLIRNL 108 (109)
T ss_dssp ---HHTCEEECHHHHHHHHHHT
T ss_pred ---HcCCeEEeHHHHHHHHHhC
Confidence 2368999999999998764
No 93
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=96.43 E-value=0.004 Score=69.82 Aligned_cols=175 Identities=20% Similarity=0.218 Sum_probs=100.0
Q ss_pred CCcEEEEEecceEEEEEEEeCCE-EEEEeC----CCCCCCcchhhHHHHHHHhc-ccCceeeceeEEEEeC---------
Q 001083 244 GKEVVIECKFDGDRIQIHKNGSE-IHYFSR----SFLDHSEYGHAMSKIIEQNV-LVDRCILDGEMLVWDT--------- 308 (1160)
Q Consensus 244 ~~~~~~E~K~DGeR~qih~~g~~-v~~fSR----~g~d~t~~~~~l~~~l~~~~-~~~~~ILDGElv~~d~--------- 308 (1160)
.-.|++|+|+||.-+.+.+.+|. ++..|| .|+|+|.....|.. |-..+ ....+.+=||++.--.
T Consensus 104 ~~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IP~~L~~~~~levRGEv~m~~~~F~~lN~~~ 182 (318)
T 3jsl_A 104 NVEYMCELKIDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHA-IPLKMKEPLNVEVRGEAYMPRRSFLRLNEEK 182 (318)
T ss_dssp SCCEEEEEEECSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHTTCTT-SCSBCSSCCCEEEEEEEECCHHHHHHHHHHH
T ss_pred CceEEEEEeecceEEEEEEECCEEEEEEeCCCCccchhHHHHHHHhcC-CccccCCCCcEEEEEEEEEcHHHHHHHHHHH
Confidence 34799999999999999887775 689999 47788753211110 00011 1235788899886210
Q ss_pred -CCCcccccccHHHHH-HHhccCCCCC---CccEEEEEEeeeecCCcccccCCHHHHHHHHHHhhccCCCcceeeccCCC
Q 001083 309 -SLNRFAEFGSNQEIA-KAARDGLSSD---RQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHG 383 (1160)
Q Consensus 309 -~~~~~~pF~~lq~i~-~~~r~~~~~~---~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~ 383 (1160)
..+. .+|..-+..+ ...|. .++. ..++.|++|.+...+|.. -....++.+.|.++-=++..
T Consensus 183 ~~~g~-~~faNPRNaAAGsLRq-ld~~ita~R~L~ff~y~~~~~~~~~--~~t~~e~l~~L~~~GF~v~~---------- 248 (318)
T 3jsl_A 183 EKNDE-QLFANPRNAAAGSLRQ-LDSKLTAKRKLSVFIYSVNDFTDFN--ARSQSEALDELDKLGFTTNK---------- 248 (318)
T ss_dssp BTTBC-CCCSSHHHHHHHHHSC-SCHHHHHHSCCEEEEEEESCCTTCC--CSBHHHHHHHHHHHTCCCCT----------
T ss_pred HHhCC-ccccChHHHHHHHHHc-cChhhhhhCcceEEEEecccccCCC--CCCHHHHHHHHHHCCCCcCC----------
Confidence 0010 2343222211 11111 1110 123999999998766533 24788999999887322211
Q ss_pred CCccccCCCCCccceecCCHHHHHHHHHHHHHc------CCceEEEecCCCCCc----CCCCCCCe---EEEccc
Q 001083 384 LNSHVRPQGEPCWSLVAHNVDEVEKFFKETIEN------RDEGIVLKDLGSKWE----PGDRSGKW---LKLKPE 445 (1160)
Q Consensus 384 ~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~------g~EGlVlK~~ds~Y~----pGkRs~~W---lKlKpe 445 (1160)
....+.+.+++.++++.+.+. .-.|||+|--+-.+. ...|.+.| +|+.++
T Consensus 249 ------------~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~t~k~PRWAiAyKfp~~ 311 (318)
T 3jsl_A 249 ------------NRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFTQKSPRWAIAYKFPAE 311 (318)
T ss_dssp ------------TCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBTTEEEEECC--
T ss_pred ------------cceEeCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCHHHHHHhCCCCCCCCceEEECCCCc
Confidence 123567899999999887442 347999995443322 11244556 555553
No 94
>1xdn_A RNA editing ligase MP52; HET: MSE ATP; 1.20A {Trypanosoma brucei} SCOP: d.142.2.4
Probab=96.26 E-value=0.019 Score=62.46 Aligned_cols=120 Identities=21% Similarity=0.234 Sum_probs=71.2
Q ss_pred CCCcEEEEEecceEEEEEEE--eCCE--EEEEeCCCCC-----CCcc---hhhHHHHH---HHhc-------ccCceeec
Q 001083 243 HGKEVVIECKFDGDRIQIHK--NGSE--IHYFSRSFLD-----HSEY---GHAMSKII---EQNV-------LVDRCILD 300 (1160)
Q Consensus 243 ~~~~~~~E~K~DGeR~qih~--~g~~--v~~fSR~g~d-----~t~~---~~~l~~~l---~~~~-------~~~~~ILD 300 (1160)
.+..|.+.+|.||.-.-+.. +++. +++.||++.- +-.+ .+.+...+ .+.+ ....+++=
T Consensus 31 ~~~ewvatEKIHGaNFsii~~~d~~~~~i~~akRs~~l~~~e~FfGy~~i~~~l~~~~~~l~~~l~~~~~~~~~~~v~Vy 110 (277)
T 1xdn_A 31 AAQEWVACEKVHGTNFGIYLINQGDHEVVRFAKRSGIMDPNENFFGYHILIDEFTAQIRILNDLLKQKYGLSRVGRLVLN 110 (277)
T ss_dssp GGSCEEEEEECCSEEEEEEEEEETTEEEEEEEETTEECCTTCCCTTGGGGHHHHHHHHHHHHHHHHHHHTCSCCSEEEEE
T ss_pred CCCcEEEEEeeccccEEEEEecCCCeeEEEEeecccccCcccccccHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEE
Confidence 45689999999999998888 6777 9999999732 2221 12332222 1111 14789999
Q ss_pred eeEEEEeC---CC-----------CcccccccHHHHHHHhccCCCCCC-ccEEEEEEeeeecCC---cccccCCHHHHHH
Q 001083 301 GEMLVWDT---SL-----------NRFAEFGSNQEIAKAARDGLSSDR-QVLCYFAFDVLYVGD---TSVIHQSLKERHE 362 (1160)
Q Consensus 301 GElv~~d~---~~-----------~~~~pF~~lq~i~~~~r~~~~~~~-~~~~~~vFDiL~lng---~sl~~~pl~eRr~ 362 (1160)
||+..|.- .. .+..|+.. + ....+.-.+- +.+.|+||||.+.++ .....++|.+=.+
T Consensus 111 GELfGg~y~hp~v~~~~~~~~~~~~~~~p~~~-~----~IQ~~i~~~Y~p~~~FYaFDI~~~~~~~~~~~~~L~fd~~~~ 185 (277)
T 1xdn_A 111 GELFGAKYKHPLVPKSEKWCTLPNGKKFPIAG-V----QIQREPFPQYSPELHFFAFDIKYSVSGAEEDFVLLGYDEFVE 185 (277)
T ss_dssp EEEEEEECCCTTSCCCCCEEECTTSCEEEGGG-C----CSCCCSSCCCEEEEEEEEEEEEEESSCCGGGEEECCHHHHHH
T ss_pred EEEecCccCCccccccccccccCccccCcccc-c----ccccccccccCCCceEEEEEEEEecCCCccccccCCHHHHHH
Confidence 99999861 10 01112210 0 0111110011 248999999998752 2345688888777
Q ss_pred HHHHh
Q 001083 363 LLQKV 367 (1160)
Q Consensus 363 ~L~~~ 367 (1160)
.+...
T Consensus 186 ~~~~~ 190 (277)
T 1xdn_A 186 FSSKV 190 (277)
T ss_dssp HHHTS
T ss_pred HHHHh
Confidence 77664
No 95
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.26 E-value=0.011 Score=56.34 Aligned_cols=79 Identities=16% Similarity=0.163 Sum_probs=58.7
Q ss_pred CCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhh
Q 001083 800 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREK 878 (1160)
Q Consensus 800 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~ 878 (1160)
....|.|.+|+|.|..... .++.+..+|..+||++....+ .++|||++...+. ..++++.
T Consensus 19 ~~~~l~G~~~v~TG~l~~~----------~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~----sKl~KA~----- 79 (112)
T 2ebu_A 19 AENCLEGLIFVITGVLESI----------ERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ----SKSDKAA----- 79 (112)
T ss_dssp CSSSSTTCEEEECSCCSSS----------CHHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCS----HHHHHHH-----
T ss_pred CCCCcCCCEEEEeeeCCCC----------CHHHHHHHHHHcCCEEeccccCCeeEEEecCCCCh----HHHHHHH-----
Confidence 3457999999999975311 256888999999999999999 4999999875431 1122211
Q ss_pred hhccCCccEEeccchHHHHHHcC
Q 001083 879 HLLWNKKLHVVRSQWLEDCLAKE 901 (1160)
Q Consensus 879 ~~~~~~~~~IVt~~Wl~eci~~~ 901 (1160)
...++||+.+|+.+++..+
T Consensus 80 ----~lgI~IisE~~f~~ll~~~ 98 (112)
T 2ebu_A 80 ----ALGTKIIDEDGLLNLIRTM 98 (112)
T ss_dssp ----HHTCEEEEHHHHHHHHHHS
T ss_pred ----HcCCeEEeHHHHHHHHhhC
Confidence 2368999999999999753
No 96
>2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase, ATP-binding; HET: APC; 2.21A {Bacteriophage T4}
Probab=96.18 E-value=0.028 Score=64.78 Aligned_cols=142 Identities=13% Similarity=0.098 Sum_probs=87.2
Q ss_pred CcEEEEEecceEEEEEEEeCCEEEEEeCCCCCCCc--chhh---------HHHHHHHhcccCceeeceeEEEEeCCCCcc
Q 001083 245 KEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE--YGHA---------MSKIIEQNVLVDRCILDGEMLVWDTSLNRF 313 (1160)
Q Consensus 245 ~~~~~E~K~DGeR~qih~~g~~v~~fSR~g~d~t~--~~~~---------l~~~l~~~~~~~~~ILDGElv~~d~~~~~~ 313 (1160)
.++.+++|+||.=+.+...+|++.+.||++..... .... +.+.+ ..+...++.+-||++. +....+
T Consensus 93 ~pv~V~eK~DGslv~~~~~~G~l~~~SKgs~~~~~a~~~~~~l~~~~~~~l~~~~-~~l~~~~~t~~fE~~~--pen~hV 169 (375)
T 2c5u_A 93 DVDYILTKEDGSLVSTYLDGDEILFKSKGSIKSEQALMANGILMNINHHRLRDRL-KELAEDGFTANFEFVA--PTNRIV 169 (375)
T ss_dssp GEEEEEEECCSEEEEEEEETTEEEEEETTBSSSHHHHHHHHHHHSGGGHHHHHHH-HHHHHTTEEEEEEEEC--TTSCSS
T ss_pred CCEEEEEecCCeEEEEEEECCEEEEEeCCCCCChHHHHHHHHHhhhcchHHHHHH-HHhcCCCCEEEEEEcC--CCCcee
Confidence 57999999999998777889999999999976432 0111 11111 1123577899999987 221222
Q ss_pred cccccHHHHHHHhccCCCCCCccEEEEEEeeeecC-CcccccCCHHHHHHHHHHhhccCCCcceeeccCCCCCccccCCC
Q 001083 314 AEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVG-DTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQG 392 (1160)
Q Consensus 314 ~pF~~lq~i~~~~r~~~~~~~~~~~~~vFDiL~ln-g~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~~~~~v~~~~ 392 (1160)
+++ + . ..+++|||-.-+ |+- +|+.++.++.+ +--+...
T Consensus 170 l~Y----------------~-~-~~L~L~~i~~n~tg~~---l~~~e~~~~a~-~g~~~V~------------------- 208 (375)
T 2c5u_A 170 LAY----------------Q-E-MKIILLNVRENETGEY---ISYDDIYKDAT-LRPYLVE------------------- 208 (375)
T ss_dssp SCC----------------S-S-CEEEEEEEEETTTCCB---CCHHHHHHCTT-TGGGBCC-------------------
T ss_pred ccC----------------C-C-CCEEEEEEEEcCCCcE---ecHHHHHHHHh-hCCCcCc-------------------
Confidence 222 1 1 459999998755 443 69999876654 2111100
Q ss_pred CCccceecCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEcccc
Q 001083 393 EPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEY 446 (1160)
Q Consensus 393 ~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKlKpeY 446 (1160)
++. .+.+++.+.... ..+.||+|++..++ .++|+|-++
T Consensus 209 --~~~---~~l~ell~~~~~--~~~~EGfVir~~~g---------~~~K~Kt~~ 246 (375)
T 2c5u_A 209 --RYE---IDSPKWIEEAKN--AENIEGYVAVMKDG---------SHFKIKSDW 246 (375)
T ss_dssp --EEE---CSSTHHHHHHHH--CSSCCEEEEEETTS---------CEEEEECHH
T ss_pred --eee---ccHHHHHHHHhh--CCCCceEEEEecCC---------CEEEEecHH
Confidence 011 112333333322 57899999998742 499999953
No 97
>1xk5_A Snurportin-1; protein-RNA-complex, transport protein; HET: TPG; 2.40A {Homo sapiens}
Probab=96.18 E-value=0.016 Score=60.74 Aligned_cols=179 Identities=12% Similarity=0.101 Sum_probs=117.5
Q ss_pred ccccccccCChHHHHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEeCCCCCCC---cchhhHHHHHHHhcccCceeece
Q 001083 225 RPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHS---EYGHAMSKIIEQNVLVDRCILDG 301 (1160)
Q Consensus 225 ~PmLA~~~~~~~~~~~~~~~~~~~~E~K~DGeR~qih~~g~~v~~fSR~g~d~t---~~~~~l~~~l~~~~~~~~~ILDG 301 (1160)
+.||++-+.++++-+. .+|++=+===|-||+|+...|....+||+|.-+. ...|+=... ..-...-+||||
T Consensus 5 ~lmlsEWl~diP~dl~----~~Wl~vp~P~GkRcLvva~~G~T~~~~k~G~~~~~F~S~LPgG~~~--~~~~~~~tILDC 78 (204)
T 1xk5_A 5 QLMLSEWLIDVPSDLG----QEWIVVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRR--NSTAKDYTILDC 78 (204)
T ss_dssp CSEEEEECCSCCTTHH----HHEEEEEEESSEEEEEEEETTEEEEECTTSCEEEEECCSSSSSCSS--SCCTTCCEEEEE
T ss_pred chhhhhhcccCCCccC----CCeEEEECCCCcEEEEEecCCeEEEECCCCcEEEEEcccCCCCCcc--cCCCCCCEEEEE
Confidence 5688887766554332 3688888888999999999999999999998753 223320000 000124689998
Q ss_pred eEEEEeCCCCcccccccHHHHHHHhccCCCCCCccEEEEEEeeeecCCcccccCCHHHHHHHHHHhhccCCCcceeeccC
Q 001083 302 EMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPD 381 (1160)
Q Consensus 302 Elv~~d~~~~~~~pF~~lq~i~~~~r~~~~~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~ 381 (1160)
= |++. . -.|+|.|||..||.++.+-..+-|.-.|++-+.+.++--+.- ..
T Consensus 79 I---~~e~-------------------------~-~tyYVLDvl~W~g~~l~dcetefRffWl~skl~E~~~l~~~s-~~ 128 (204)
T 1xk5_A 79 I---YNEV-------------------------N-QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKT-KL 128 (204)
T ss_dssp E---EEGG-------------------------G-TEEEEEEEEEETTEECTTSCHHHHHHHHHHHTTTSTTTTSCB-TT
T ss_pred E---EecC-------------------------C-cEEEEEEEEEECCceeecCcHHHHHHHHHHHhcccccccccc-cc
Confidence 3 3321 0 249999999999999999999999999999887754211100 00
Q ss_pred CCCCccccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEccccc
Q 001083 382 HGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYI 447 (1160)
Q Consensus 382 ~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKlKpeY~ 447 (1160)
....+... ....+ +.+.+.+++.....--..|+.+=..++.|.+|. ++-+.=+||.-+
T Consensus 129 n~~~f~~l------p~~~c-~~~~l~~~~~~~~~~~~DGlLFyHK~a~Y~~G~-TPLv~WLkp~ml 186 (204)
T 1xk5_A 129 NPFKFVGL------KNFPC-TPESLCDVLSMDFPFEVDGLLFYHKQTHYSPGS-TPLVGWLRPYMV 186 (204)
T ss_dssp BSSEEEEC------CEEEC-SHHHHHHHHTCCCSSCEEEEEEEESSCCCCSEE-EEEEEEECGGGH
T ss_pred CCcceEec------ccccC-CHHHHHHHHccCCCCCcceEEEEeccccccCCC-CChhhhcchhhc
Confidence 00000001 12233 467777777655566789999999999999995 554333577544
No 98
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=95.90 E-value=0.02 Score=64.17 Aligned_cols=179 Identities=13% Similarity=0.111 Sum_probs=115.7
Q ss_pred ccccccccCChHHHHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEeCCCCCCC---cchhhHHHHHHHhcccCceeece
Q 001083 225 RPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHS---EYGHAMSKIIEQNVLVDRCILDG 301 (1160)
Q Consensus 225 ~PmLA~~~~~~~~~~~~~~~~~~~~E~K~DGeR~qih~~g~~v~~fSR~g~d~t---~~~~~l~~~l~~~~~~~~~ILDG 301 (1160)
+.||+.-+-.+++-+ +.+|++=+===|-||+|+...|....|+|+|.-+. ..+|+=...- .. ...-|||||
T Consensus 106 qlMlsEWl~dvP~dL----~~~W~~vpcPvGkRcLVVas~G~T~aysk~G~~l~~F~S~LPGG~~~~-s~-~~~~TILDC 179 (365)
T 3gjx_B 106 QLMLSEWLIDVPSDL----GQEWIVVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRN-ST-AKDYTILDC 179 (365)
T ss_dssp CSEEEEECCSCCTTH----HHHEEEEEEESSEEEEEEEETTEEEEECTTCCEEEEECCSSTTTCC------CCCCEEEEE
T ss_pred hHHHHHhcccCCccc----ccCeeEEeccCCcEEEEEecCceEEEECCCCCEEeeeCCCCCCCCccc-cC-CCCCEEEEE
Confidence 578888766554432 23688777778999999999999999999997643 3334311100 00 245789998
Q ss_pred eEEEEeCCCCcccccccHHHHHHHhccCCCCCCccEEEEEEeeeecCCcccccCCHHHHHHHHHHhhccCCCcceeeccC
Q 001083 302 EMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPD 381 (1160)
Q Consensus 302 Elv~~d~~~~~~~pF~~lq~i~~~~r~~~~~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~ 381 (1160)
= |+.. . -.|+|.|||..+|.++.+-+..-|.-.|.+-+.+.++--+. ...
T Consensus 180 I---y~e~-------------------------~-~tyYVLDVL~W~g~~l~dCeteFRffWl~SKL~E~~~l~e~-s~~ 229 (365)
T 3gjx_B 180 I---YNEV-------------------------N-QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEK-TKL 229 (365)
T ss_dssp E---EETT-------------------------T-TEEEEEEEEEETTEECTTSCHHHHHHHHHHHGGGSTTTTSC-CSS
T ss_pred E---eecC-------------------------C-ceEEEEEEeeeCCcccccCchHHHHHHHHHHhhhccccccc-ccC
Confidence 3 4321 0 25999999999999999999999999999988765321000 000
Q ss_pred CCCCccccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEccccc
Q 001083 382 HGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYI 447 (1160)
Q Consensus 382 ~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKlKpeY~ 447 (1160)
....+... ..+.+ +.+.+..++..-..--..||.+=.-.+.|.+|. ++-+.=+||.-+
T Consensus 230 np~~Fv~l------p~~~C-~~esL~~~ls~~~pfe~DGLLFYHK~ahY~~G~-TPLVgWLkPyMv 287 (365)
T 3gjx_B 230 NPFKFVGL------KNFPC-TPESLCDVLSMDFPFEVDGLLFYHKQTHYSPGS-TPLVGWLRPYMV 287 (365)
T ss_dssp CCSEEEEC------CEEEC-CHHHHHHHTTCCCSSCEEEEEEEETTCCCCSEE-EEEEEEECHHHH
T ss_pred CCCceecc------CCCCc-CHHHHHHHhccCCCCccceEEEEeccccccCCC-Cccceecchhhh
Confidence 00000000 12222 456676666555555688999999999999995 554444566433
No 99
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=95.81 E-value=0.0015 Score=80.19 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=0.0
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhcCC-CeeecchHHHHHhcCcc
Q 001083 655 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKKL 733 (1160)
Q Consensus 655 s~lF~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~~~~~Th~Ia~~~~~~K~~~a~~~~-~VV~p~WV~dCi~~~~l 733 (1160)
...|.|++||+++.... ++++++.+|.++||++....+..++|+|+++..+-|++.|...+ +||+-+|+++++..+.+
T Consensus 585 ~~~l~G~~~v~TG~l~~-~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~gsKl~KA~~lgI~Ii~E~~f~~~l~~~~~ 663 (667)
T 1dgs_A 585 SDLLSGLTFVLTGELSR-PREEVKALLGRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVAVLTEEEFWRFLKEKGA 663 (667)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCEEEEeCCCCC-CHHHHHHHHHHcCCEEcCcccCCeeEEEECCCCChHHHHHHHCCCeEEeHHHHHHHHhcCCC
Confidence 45799999999876655 89999999999999999999887889998887788999998888 99999999999987654
Q ss_pred C
Q 001083 734 L 734 (1160)
Q Consensus 734 L 734 (1160)
.
T Consensus 664 p 664 (667)
T 1dgs_A 664 P 664 (667)
T ss_dssp -
T ss_pred C
Confidence 3
No 100
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=95.70 E-value=0.017 Score=71.15 Aligned_cols=193 Identities=18% Similarity=0.233 Sum_probs=113.7
Q ss_pred cEEEEEecceEEEEEEEeCCE-EEEEeCC----CCCCCcchhhHHHHHHHhcc----cCceeeceeEEEEeCC-------
Q 001083 246 EVVIECKFDGDRIQIHKNGSE-IHYFSRS----FLDHSEYGHAMSKIIEQNVL----VDRCILDGEMLVWDTS------- 309 (1160)
Q Consensus 246 ~~~~E~K~DGeR~qih~~g~~-v~~fSR~----g~d~t~~~~~l~~~l~~~~~----~~~~ILDGElv~~d~~------- 309 (1160)
.|++|+|+||.-+.+.+.+|. ++..||. |+|+|.....+.. +-..+. +..+.+=||++.-...
T Consensus 109 ~~~~e~KiDGlaisL~Ye~G~Lv~a~TRGDG~~GEdvT~n~rtI~~-IP~~l~~~~~p~~levRGEv~m~~~~F~~lN~~ 187 (671)
T 2owo_A 109 TWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRA-IPLKLHGENIPARLEVRGEVFLPQAGFEKINED 187 (671)
T ss_dssp CEEEEEEESSEEEEEEEETTEEEEEECCTTSSEEEBCHHHHHTCTT-SCSBCCSSSCCSEEEEEEEEECCHHHHHHHHHH
T ss_pred eEEEEEecceEEEEEEEeCCEEEEEEecCCCcchhhHHHHHhhhcC-CCccccCCCCCCeEEEEEEEEEEHHHHHHHHHH
Confidence 699999999999999998775 6889994 6777752211111 000111 2337788998763110
Q ss_pred ---CCcccccccHHHHH-HHhccCCCC---CCccEEEEEEeeeecCC-cccccCCHHHHHHHHHHhhccCCCcceeeccC
Q 001083 310 ---LNRFAEFGSNQEIA-KAARDGLSS---DRQVLCYFAFDVLYVGD-TSVIHQSLKERHELLQKVVKPSKGRLETLVPD 381 (1160)
Q Consensus 310 ---~~~~~pF~~lq~i~-~~~r~~~~~---~~~~~~~~vFDiL~lng-~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~ 381 (1160)
.| -.+|..-+..+ ...|. .++ ...++.|++|++...+| .. -....++.+.|..+-=++..
T Consensus 188 ~~~~g-~~~faNpRNaaAGsLrq-ld~~~~a~R~L~~~~y~~~~~~~~~~--~~t~~e~l~~L~~~Gf~v~~-------- 255 (671)
T 2owo_A 188 ARRTG-GKVFANPRNAAAGSLRQ-LDPRITAKRPLTFFCYGVGVLEGGEL--PDTHLGRLLQFKKWGLPVSD-------- 255 (671)
T ss_dssp HHHSS-CCCCSCHHHHHHHHHTC-SCHHHHHTSCCEEEEEEEEEEESSCC--CSBHHHHHHHHHHHTCCCCT--------
T ss_pred HHhcC-CCcccChHHHHHHHHHh-cChhhHhcCCCEEEEEECcccCCCCC--CCCHHHHHHHHHHCCCCCCC--------
Confidence 00 01232222111 11111 111 11249999999965554 22 25788999999987433221
Q ss_pred CCCCccccCCCCCccceecCCHHHHHHHHHHHHHc------CCceEEEecCCCCCc----CCCCCCCe---EEEcccccc
Q 001083 382 HGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIEN------RDEGIVLKDLGSKWE----PGDRSGKW---LKLKPEYIR 448 (1160)
Q Consensus 382 ~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~------g~EGlVlK~~ds~Y~----pGkRs~~W---lKlKpeY~~ 448 (1160)
....+.+.+++.++++++.+. .-.|+|+|--+-.+. ...|.+.| +|+.++
T Consensus 256 --------------~~~~~~~~~~v~~~~~~~~~~R~~l~y~iDGvViKv~~~~~q~~LG~t~k~PrWAiA~Kfpae--- 318 (671)
T 2owo_A 256 --------------RVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARAPRWAVAFKFPAQ--- 318 (671)
T ss_dssp --------------TCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEEECCCC---
T ss_pred --------------cceeeCCHHHHHHHHHHHHHHHhcCCCCCccEEEEecCHHHHHHhCcccCCCCceEEEcCCCc---
Confidence 123567899999999988544 348999996543332 12356777 777775
Q ss_pred CCCcccEEEEEEEeCCCCCCCccc
Q 001083 449 AGSDLDVLIIGGYYGSGRRGGEVA 472 (1160)
Q Consensus 449 ~g~~lDlvIIG~~~G~Grr~g~~g 472 (1160)
..--.|.+..|.-|| .|.++
T Consensus 319 ---~~~T~l~~I~~qVGR-TG~iT 338 (671)
T 2owo_A 319 ---EQMTFVRDVEFQVGR-TGAIT 338 (671)
T ss_dssp ---EEEEEEEEEEEEECT-TSBEE
T ss_pred ---eEEEEEEEEEEecCC-Cceee
Confidence 444566676776664 55554
No 101
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=95.66 E-value=0.031 Score=53.39 Aligned_cols=82 Identities=13% Similarity=0.121 Sum_probs=59.3
Q ss_pred ccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCCC-ceEEEEecC---CCcccchhhhHHHHHHHh
Q 001083 802 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN-ATHVVVLSV---LGYDVNFNSLTESFTARE 877 (1160)
Q Consensus 802 ~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~-vTHVVV~~~---~~~~~~~~~l~~~l~~~~ 877 (1160)
..|.|++|.|.|... .. ++.++..|+.+||+++...+. ++|||+... .+ ..++++
T Consensus 9 ~~l~G~~~ViTG~l~---~~--------R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~g-----sKl~kA----- 67 (113)
T 2cok_A 9 KPLSNMKILTLGKLS---RN--------KDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMN-----KKMEEV----- 67 (113)
T ss_dssp CSSSSCEEEECSCCS---SC--------HHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCC-----HHHHHH-----
T ss_pred CCcCCCEEEEEecCC---CC--------HHHHHHHHHHCCCEEcCccccCccEEEECCCCCCCC-----hHHHHH-----
Confidence 469999999999642 11 467889999999999999995 899999732 11 111211
Q ss_pred hhhccCCccEEeccch----------HHHHHHcCCccCCCC
Q 001083 878 KHLLWNKKLHVVRSQW----------LEDCLAKEQKSEEYE 908 (1160)
Q Consensus 878 ~~~~~~~~~~IVt~~W----------l~eci~~~~~v~Ee~ 908 (1160)
....++||+.+| +.+||....++|-..
T Consensus 68 ----~~lgI~IvsE~~l~~~~~~~~~~~~~i~k~~i~~w~~ 104 (113)
T 2cok_A 68 ----KEANIRVVSEDFLQDVSASTKSLQELFLAHILSSWGA 104 (113)
T ss_dssp ----HHTTCCEECTHHHHHHHSCCSCHHHHHHHTBCSSCCC
T ss_pred ----HHCCCcEEeHHHHHHHHhhchhHHHHHHHhcCCCCCC
Confidence 124689999999 667777777776665
No 102
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=95.33 E-value=0.0029 Score=77.83 Aligned_cols=75 Identities=20% Similarity=0.231 Sum_probs=0.0
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhhhcCC-CeeecchHHHHHh
Q 001083 655 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCS 729 (1160)
Q Consensus 655 s~lF~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~~~~~Th~Ia~~~~~~K~~~a~~~~-~VV~p~WV~dCi~ 729 (1160)
...|.|++||+++.....++++++.+|.++||++....+..++|+|+++..+-|++.|...+ +||+-+|+++++.
T Consensus 595 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~gsKl~KA~~lgI~Ii~E~~f~~~l~ 670 (671)
T 2owo_A 595 DSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLLG 670 (671)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CCcccCcEEEEcCCCCCCCHHHHHHHHHHcCCEEeCcccCceeEEEECCCCChHHHHHHHCCCcEEcHHHHHHHhc
Confidence 45799999999877667789999999999999999999887889998887788999998888 9999999998874
No 103
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=95.27 E-value=0.0083 Score=72.83 Aligned_cols=195 Identities=17% Similarity=0.199 Sum_probs=114.9
Q ss_pred cEEEEEecceEEEEEEEeCCE-EEEEeC----CCCCCCcchhhHHHHHHHhcc-------cCceeeceeEEEEeC-----
Q 001083 246 EVVIECKFDGDRIQIHKNGSE-IHYFSR----SFLDHSEYGHAMSKIIEQNVL-------VDRCILDGEMLVWDT----- 308 (1160)
Q Consensus 246 ~~~~E~K~DGeR~qih~~g~~-v~~fSR----~g~d~t~~~~~l~~~l~~~~~-------~~~~ILDGElv~~d~----- 308 (1160)
.|++|+|+||.-+.+.+.+|. ++..|| .|+|+|.....+.. +-..+. +..+.+=||++.--.
T Consensus 117 ~~~~EpKiDGlavsL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IP~~L~~~~~~~~p~~levRGEv~m~~~~F~~l 195 (615)
T 3sgi_A 117 HYLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIAD-VPERLTPGDDYPVPEVLEVRGEVFFRLDDFQAL 195 (615)
T ss_dssp CEEEEEEECSEEEEEEEETTEEEEEECCTTSSSCBCCHHHHHSCSS-SCSSCCCCSSCCCCSEEEEEEEEECCHHHHHHH
T ss_pred eEEEEEEecceEEEEEEECCEEEEEEecCCCcchhhHHHHHHhhcC-cchhhcCCcccCCCCeEEEEEEEEEeHHHHHHH
Confidence 699999999999999988776 689999 57888752211110 000111 335788899886311
Q ss_pred --C---CCcccccccHHHHH-HHhccCCCCC---CccEEEEEEeeeecCCcccccCCHHHHHHHHHHhhccCCCcceeec
Q 001083 309 --S---LNRFAEFGSNQEIA-KAARDGLSSD---RQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLV 379 (1160)
Q Consensus 309 --~---~~~~~pF~~lq~i~-~~~r~~~~~~---~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~ 379 (1160)
. .| -.+|..-+..+ ...|. .++. ..++.|++|.+...+|.. -....++.+.|..+-=++..
T Consensus 196 N~~~~~~g-~~~faNpRNaAAGsLRq-ld~~ita~R~L~~f~y~~~~~~~~~--~~t~~e~l~~L~~~Gf~v~~------ 265 (615)
T 3sgi_A 196 NASLVEEG-KAPFANPRNSAAGSLRQ-KDPAVTARRRLRMICHGLGHVEGFR--PATLHQAYLALRAWGLPVSE------ 265 (615)
T ss_dssp HTTCSSSS-SCCCSSHHHHHHHHHTC-SSTTHHHHSCCEEEEEEEEEEESCC--CSBTTTHHHHHHHTTCCCCC------
T ss_pred HHHHHHcC-CCcCCChHHHHHHHHHc-CChhhHhhCcceEEEEeccccCCCC--CcCHHHHHHHHHHCCCCCCC------
Confidence 0 01 12454322222 11221 1221 124999999998765532 23567888888876322211
Q ss_pred cCCCCCccccCCCCCccceecCCHHHHHHHHHHHHH------cCCceEEEecCCCCCcC----CCCCCCe---EEEcccc
Q 001083 380 PDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIE------NRDEGIVLKDLGSKWEP----GDRSGKW---LKLKPEY 446 (1160)
Q Consensus 380 p~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~------~g~EGlVlK~~ds~Y~p----GkRs~~W---lKlKpeY 446 (1160)
....+.+.+++.++++.+.+ ---.|||+|--+-.+.. ..|.+.| +|+.++
T Consensus 266 ----------------~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~lG~t~k~PRWAiA~Kfpae- 328 (615)
T 3sgi_A 266 ----------------HTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRWAIAYKYPPE- 328 (615)
T ss_dssp ----------------CCCCBSSHHHHHHHHTTTTTSGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEEECCCS-
T ss_pred ----------------CeEeeCCHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCHHHHHHhCCCCCCCCceEEEcCCCc-
Confidence 12346789999999987633 34579999965543322 2356778 788875
Q ss_pred ccCCCcccEEEEEEEeCCCCCCCccceE
Q 001083 447 IRAGSDLDVLIIGGYYGSGRRGGEVAQF 474 (1160)
Q Consensus 447 ~~~g~~lDlvIIG~~~G~Grr~g~~gsf 474 (1160)
..--.|.+..|.-|| .|.++-.
T Consensus 329 -----e~~T~l~~I~~qVGR-TG~iTPv 350 (615)
T 3sgi_A 329 -----EAQTKLLDIRVNVGR-TGRITPF 350 (615)
T ss_dssp -----EEEEECCEECCCBCS-SSCBCCB
T ss_pred -----eeEEEEEEEEEecCC-CceeeEE
Confidence 344455666666664 5555443
No 104
>4e6n_A Metallophosphoesterase; RNA repair, RNA ligase, ligase-activating, protein binding; HET: AMP; 2.39A {Clostridium thermocellum} PDB: 4drf_A* 3ty9_A* 3ty8_A* 3ty5_A*
Probab=95.04 E-value=0.14 Score=57.70 Aligned_cols=183 Identities=15% Similarity=0.176 Sum_probs=108.7
Q ss_pred hHHHHHhc---CCCcEEEEEecceEEEEEEEe--------------CCEEEEEeCCCCCCCcchhhHHHHHHH-------
Q 001083 235 AHAAWRKL---HGKEVVIECKFDGDRIQIHKN--------------GSEIHYFSRSFLDHSEYGHAMSKIIEQ------- 290 (1160)
Q Consensus 235 ~~~~~~~~---~~~~~~~E~K~DGeR~qih~~--------------g~~v~~fSR~g~d~t~~~~~l~~~l~~------- 290 (1160)
+.+++.-+ +=..+.||+|.=|-|+++.+. |..-.+|+|+|..+-.. +.+.+.+..
T Consensus 68 P~eAF~yyr~~GV~~VVCEeKHMGSRAVv~vcRd~~~A~~rFGv~~g~~G~~yTRTGR~FF~d-~~l~~~ll~rlr~a~~ 146 (427)
T 4e6n_A 68 PIEAFEYFRTRGVGKVVCEQKHMGSRAVVIVCKDSQVAEKRFGVLDGTAGICYTRTGRHFFDD-MQLEAELIDRVRKVLD 146 (427)
T ss_dssp HHHHHHHHHTTTCCEEEEEECCCSEEEEEEEESSHHHHHHHHCCCSSCSEEEECTTSCBSCSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCceEEeccccCCcceEEEEEcCHHHHHHhcCCCCCCcceeEecCCccccCC-chhHHHHHHHHHHHHH
Confidence 44555443 225799999999999977652 22457999999988642 333322211
Q ss_pred ------hcccCceeeceeEEEEeCCCC-----cccccccH---------HHHHHHhc--------------cCCC-----
Q 001083 291 ------NVLVDRCILDGEMLVWDTSLN-----RFAEFGSN---------QEIAKAAR--------------DGLS----- 331 (1160)
Q Consensus 291 ------~~~~~~~ILDGElv~~d~~~~-----~~~pF~~l---------q~i~~~~r--------------~~~~----- 331 (1160)
.+..+=+.||||++-|+-+-. .+.|-|.. ..+..+.. .+++
T Consensus 147 ~aglw~~l~tdWl~LD~ELmPWSaKA~~Lir~QYA~VgaA~~a~l~~a~~~L~~A~~~~~~~~~~~~~~~~rg~dv~~Ll 226 (427)
T 4e6n_A 147 KSGFWGDFNTDWVCLDCELMPWSAKAQKLLEEQYSAVGISGRVVLDEAVKLLKQASLNKTVSFDVSRQTSGKNADINELL 226 (427)
T ss_dssp HHTHHHHTTCSEEEEEEEEECTHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTC-----------CEECCHHHHH
T ss_pred hcchHHHhCCcEEEeecccCCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccccccccccCCCHHHHH
Confidence 122455799999999974211 12211110 00000000 0000
Q ss_pred -----------------------C-CCccEEEEEEeeeecCCcccccCCHHHHHHHHHHhhccCCCcceeeccCCCCCcc
Q 001083 332 -----------------------S-DRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSH 387 (1160)
Q Consensus 332 -----------------------~-~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~~~~~ 387 (1160)
. ....+.+.-|-||-..|....+.|..--.+.+..+....++- +.+....-+.
T Consensus 227 ~r~~~r~~~~~~y~~AYr~YcWpv~gl~~~rlAPF~iLA~eg~~~~~~~H~WHm~~~~rl~~~d~~l---~~~T~~~~VD 303 (427)
T 4e6n_A 227 QRFTERSEMMQKYVEAYRKYCWPVNSIDDLKLAPFHILATEGKVHSDKNHIWHMDTIAKYCTQDDSL---IMATNHILVD 303 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCSSGGGCEEEEEEEEEETTEECTTSCHHHHHHHHHHHHSTTCTT---BCCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcCceeecchhhhhcccccccCCChHHHHHHHHHHHhcCccc---eeccccEEee
Confidence 0 011289999999999999999999998888888887655432 2211100000
Q ss_pred ccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecCCCCC
Q 001083 388 VRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKW 430 (1160)
Q Consensus 388 v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y 430 (1160)
.....+.++...++.+.-..|.||+|+|..+..=
T Consensus 304 ---------l~d~~s~~~a~~WW~~lT~~GgEGMVVKP~~~~~ 337 (427)
T 4e6n_A 304 ---------VTDAESVDKGIKWWEDLTASGGEGMVVKPYDFIV 337 (427)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHTTCCEEEEEESSSSC
T ss_pred ---------CCCHHHHHHHHHHHHHHhcCCCceeEecchhhhc
Confidence 0011345566778888889999999999875443
No 105
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=94.79 E-value=0.042 Score=67.54 Aligned_cols=192 Identities=17% Similarity=0.191 Sum_probs=112.2
Q ss_pred cEEEEEecceEEEEEEEeCCEEEEEeC----CCCCCCcchhhHHHHHHHhcc--cCceeeceeEEEEeCCCCc-------
Q 001083 246 EVVIECKFDGDRIQIHKNGSEIHYFSR----SFLDHSEYGHAMSKIIEQNVL--VDRCILDGEMLVWDTSLNR------- 312 (1160)
Q Consensus 246 ~~~~E~K~DGeR~qih~~g~~v~~fSR----~g~d~t~~~~~l~~~l~~~~~--~~~~ILDGElv~~d~~~~~------- 312 (1160)
.|++|+|+||.-+ +.+.+|. +..|| .|+|+|.....+... -..+. +..+.+=||++.-...-.+
T Consensus 110 ~~~~e~KiDGlai-L~Ye~G~-~a~TRGDG~~GedvT~n~rtI~~i-P~~l~~~p~~levRGEv~m~~~~F~~lN~~~~~ 186 (667)
T 1dgs_A 110 LYTVEHKVDGLSV-LYYEEGV-WSTGSGDGEVGEEVTQNLLTIPTI-PRRLKGVPDRLEVRGEVYMPIEAFLRLNEELEE 186 (667)
T ss_dssp EEEEEECCSCEEE-EEEETTE-EEEEECSSSEEEBCTGGGTSSTTS-CSBCSSCCSEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred eEEEEEccceeEE-EEEcCCC-EEEeeCCCcchhhHHHHHhhhcCC-CcccCCCCCeEEEEEEEEEEHHHHHHHHHHHHh
Confidence 4999999999999 9888888 99999 478888643222110 00111 3347888998763110000
Q ss_pred --ccccccHHHHH-HHhccCCCCC---CccE--EEEEEeeee-cCCcccccCCHHHHHHHHHHhhccCCCcceeeccCCC
Q 001083 313 --FAEFGSNQEIA-KAARDGLSSD---RQVL--CYFAFDVLY-VGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHG 383 (1160)
Q Consensus 313 --~~pF~~lq~i~-~~~r~~~~~~---~~~~--~~~vFDiL~-lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~ 383 (1160)
-.+|..-+..+ ...|. .++. ..++ .|++|++++ .++.. -....++.+.|..+-=++..
T Consensus 187 ~g~~~faNpRNaaAGsLrq-ld~~~~a~r~L~~~~~~y~~~~~~~~~~--~~t~~e~l~~L~~~Gf~v~~---------- 253 (667)
T 1dgs_A 187 RGEKVFKNPRNAAAGSLRQ-KDPRVTAKRGLRATFYALGLGLGLEESG--LKSQYELLLWLKEKGFPVEH---------- 253 (667)
T ss_dssp HTCCCCSSHHHHHHHHHSC-SSHHHHHHSCCEEECCCBCTTTTTTSCC--CCBHHHHHHHHHHTTCCCCS----------
T ss_pred cCCCcccChHHHHHHHHHh-cChhhhhhCCCCCEEEEEEeeccCCCCC--CCCHHHHHHHHHHCCCCCCc----------
Confidence 01232211111 11111 1111 1237 999999852 23321 25788999999887322211
Q ss_pred CCccccCCCCCccceecCCHHHHHHHHHHHHHc------CCceEEEecCCCCCc----CCCCCCCe---EEEccccccCC
Q 001083 384 LNSHVRPQGEPCWSLVAHNVDEVEKFFKETIEN------RDEGIVLKDLGSKWE----PGDRSGKW---LKLKPEYIRAG 450 (1160)
Q Consensus 384 ~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~------g~EGlVlK~~ds~Y~----pGkRs~~W---lKlKpeY~~~g 450 (1160)
....+.+.+++.++++++-+. .-.|+|+|--+-.+. .-.|.+.| +|+.++
T Consensus 254 ------------~~~~~~~~~~v~~~~~~~~~~R~~l~y~iDGvViKv~~~~~q~~LG~t~k~PrWAiA~Kfpae----- 316 (667)
T 1dgs_A 254 ------------CYEKALGAEGVEEVYRRGLAQRHALPFEADGVVLKLDDLTLWGELGYTARAPRFALAYKFPAE----- 316 (667)
T ss_dssp ------------CEEEEEHHHHHHHHHHHHHHTTTTSSSCCCEEEEEESBTHHHHHSCBCSSCBSSEEEEECCCC-----
T ss_pred ------------cceEeCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEecCHHHHHHhCcccCCCCceEEecCCCc-----
Confidence 123466789999999988654 458999996554432 12356778 777775
Q ss_pred CcccEEEEEEEeCCCCCCCccc
Q 001083 451 SDLDVLIIGGYYGSGRRGGEVA 472 (1160)
Q Consensus 451 ~~lDlvIIG~~~G~Grr~g~~g 472 (1160)
..--.|.+..|.-|| .|.++
T Consensus 317 -~~~T~l~~I~~qVGR-TG~iT 336 (667)
T 1dgs_A 317 -EKETRLLDVVFQVGR-TGRVT 336 (667)
T ss_dssp -CEEEEEEEEEEEECT-TSBEE
T ss_pred -eEEEEEEEEEEecCC-Cceee
Confidence 445566777776664 55554
No 106
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=92.43 E-value=0.11 Score=63.83 Aligned_cols=87 Identities=25% Similarity=0.440 Sum_probs=74.7
Q ss_pred CCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhh--------ccCCcccccccccCc------
Q 001083 122 GGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDL--------KLGISEKSIFHEFHP------ 187 (1160)
Q Consensus 122 ~~LTi~eVn~~Ld~LA~~~~~~~k~~il~~ll~~~t~~E~k~l~RiIlkdL--------riGi~e~til~~~hp------ 187 (1160)
.++...++-++|++|+..+++.+|..+|..+|..+++.+.-|.++++++.| ++|++++++.+++..
T Consensus 19 ~~~~f~~~~~~~~~l~~t~~r~~k~~~l~~~~~~~~~~d~~~~~~ll~~~l~P~~~~~~~~gi~~~~L~k~~~~~~g~~~ 98 (621)
T 2hiv_A 19 SHMEFKVIAEYFDKLEKISSRLQLTALLADLLSKSDKTIIDKVVYIIQGKLWPDFLGYPELGIGEKFLIKAISIATNTDE 98 (621)
T ss_dssp --CBTHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSCGGGHHHHHHHTTTCSSCGGGCCCCCCCCHHHHHHHHHHHHTCCH
T ss_pred CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCchHHHHHHHHHhCCcCcccccccccCCCHHHHHHHHHHHHCcCH
Confidence 467888999999999999999999999999999999999999999998875 789999998876532
Q ss_pred -cHHHHHhhhCCHHHHHHHHhh
Q 001083 188 -DAEDLFNVTCDLKLVCEKLKD 208 (1160)
Q Consensus 188 -da~~~~~~~~DL~~V~~~L~~ 208 (1160)
...+.|..+.||+.++..+..
T Consensus 99 ~~~~~~~~~~GDlg~~a~~~~~ 120 (621)
T 2hiv_A 99 NSVENLYKTIGDLGEVARRLKS 120 (621)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHh
Confidence 345678899999999998874
No 107
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.05 E-value=0.58 Score=46.71 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=57.8
Q ss_pred ccCeEEEEEcCC--CCCChHHHHHHHHHcCCEEEecC-CCCceEEEEecCCC----hhhHhhhcCC-CeeecchHHHHHh
Q 001083 658 FSDMVFYFVNVP--PAYSLDSLHKMVVENGGTFSMNL-NNSVTHCVAADNKG----LKYEAAKRRG-DVIHYSWVLDCCS 729 (1160)
Q Consensus 658 F~G~~F~vv~~~--~~~~k~eL~klI~~~GG~~v~n~-~~~~Th~Ia~~~~~----~K~~~a~~~~-~VV~p~WV~dCi~ 729 (1160)
.+|...|+-..+ ...+--++.+.+..-|++-.+.- .-.+||.|+.+-.+ ...-.++..+ |||+|+||..|--
T Consensus 162 msgitvclgpldplkeisdlqisqclshigarplqrhvaidtthfvcndldneesneelirakhnnipivrpewvracev 241 (290)
T 4gns_A 162 MSGITVCLGPLDPLKEISDLQISQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELIRAKHNNIPIVRPEWVRACEV 241 (290)
T ss_dssp CTTCCEEECCCCGGGTCCHHHHHHHHHHTTCCCCBSSCCTTCCEEECSCCTTCTTCHHHHHHHHTTCCEECTHHHHHHHH
T ss_pred ccCceEEecCCChhhhhhhccHHHHHHHhCCchhhheeeeecceeeecCCCcccchHHHHhhhccCCCccCHHHHHHHhh
Confidence 456777863322 23455677888888888876643 23479999876432 2333444455 9999999999999
Q ss_pred cCccCCCCcccc
Q 001083 730 QKKLLQLQPKYY 741 (1160)
Q Consensus 730 ~~~lLp~~p~~~ 741 (1160)
.++++-.+-+|+
T Consensus 242 ekrivgvrgfyl 253 (290)
T 4gns_A 242 EKRIVGVRGFYL 253 (290)
T ss_dssp TTSCCCSGGGBT
T ss_pred hheeeeeeeEEE
Confidence 999998886554
No 108
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=88.73 E-value=0.26 Score=54.87 Aligned_cols=68 Identities=16% Similarity=0.115 Sum_probs=48.3
Q ss_pred ccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecC-CCCceEEEEecCCChh----h-HhhhcCCCeeecchHHHHHh
Q 001083 658 FSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNL-NNSVTHCVAADNKGLK----Y-EAAKRRGDVIHYSWVLDCCS 729 (1160)
Q Consensus 658 F~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n~-~~~~Th~Ia~~~~~~K----~-~~a~~~~~VV~p~WV~dCi~ 729 (1160)
+..++||+ +. ...+.+|.+.+.+.||+++ ++ ...+||+|.....+.| . .+++...+||+++|+..+.+
T Consensus 113 W~P~Vl~~-Ss--ke~~~~L~~~L~~LGik~v-~~~~detTHlVm~krnT~KvTvK~L~ALI~gkPIV~~~Fl~al~~ 186 (325)
T 3huf_A 113 WRSMCIQF-DN--PEMLSQWASNLNLLGIPTG-LRDSDATTHFVMNRQAGSSITVGTMYAFLKKTVIIDDSYLQYLST 186 (325)
T ss_dssp ECCCCEEE-SC--HHHHHHHHHHHHTTTCCEE-SSCCTTCCEEECCCCCSSCCCHHHHHHHHTTCEEECHHHHHHHTT
T ss_pred EeeeEEEe-cC--HHHHHHHHHHHHHcCCEEE-EccCCCEEEEEEeccccccchHHHHHHHHCCCcEecHHHHHHHHH
Confidence 45556676 21 1235679999999999999 77 5679999985444443 3 44555459999999999764
No 109
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Probab=85.69 E-value=0.93 Score=54.94 Aligned_cols=85 Identities=18% Similarity=0.358 Sum_probs=70.8
Q ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCHH-HHHHHHHHHhhhhc-------cCCcccccccccC------c-c
Q 001083 124 LTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQ-EMKWIIMIILKDLK-------LGISEKSIFHEFH------P-D 188 (1160)
Q Consensus 124 LTi~eVn~~Ld~LA~~~~~~~k~~il~~ll~~~t~~-E~k~l~RiIlkdLr-------iGi~e~til~~~h------p-d 188 (1160)
+...++-+++++|+..+++.+|..+|..+|...+|. +.-++++++++.+. +|++++++.+++. + .
T Consensus 4 m~~~~~a~~~~~i~~t~~r~~k~~~l~~~~~~~~~~~~~~~~~~l~~g~~~p~~~~~~~gi~~~~l~~~~~~~~g~~~~~ 83 (558)
T 3gde_A 4 MLFAEFAEFCERLEKISSTLELTARIAAFLQKIEDERDLYDVVLFITGKVYPPWDERELGVGIGLLYEALENVSGVKRSE 83 (558)
T ss_dssp CBHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTCSSCTTSSCCCCCCHHHHHHHHHHHHCCCHHH
T ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCchhhHHHHHHHHcCCCCcccccceeCcChHHHHHHHHHHHCcCHHH
Confidence 567888899999999999999999999999999988 88999999987663 6999998876542 1 2
Q ss_pred HHHHHhhhCCHHHHHHHHhh
Q 001083 189 AEDLFNVTCDLKLVCEKLKD 208 (1160)
Q Consensus 189 a~~~~~~~~DL~~V~~~L~~ 208 (1160)
..+.|+...||+.++..+..
T Consensus 84 ~~~~~~~~GDlg~~a~~~~~ 103 (558)
T 3gde_A 84 IESMIREYGDLGLVAEQLIK 103 (558)
T ss_dssp HHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHh
Confidence 45678899999999988764
No 110
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=85.45 E-value=0.68 Score=56.22 Aligned_cols=85 Identities=21% Similarity=0.310 Sum_probs=71.6
Q ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhc-------cCCcccccccccCc-------cHH
Q 001083 125 TIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLK-------LGISEKSIFHEFHP-------DAE 190 (1160)
Q Consensus 125 Ti~eVn~~Ld~LA~~~~~~~k~~il~~ll~~~t~~E~k~l~RiIlkdLr-------iGi~e~til~~~hp-------da~ 190 (1160)
...++-+++++|+..+++.+|..+|..+|..+++.+..|.++++++.|- +|++++++.+++.. ...
T Consensus 2 ~f~~~a~~~~~l~~t~~r~~k~~~l~~~~~~~~~~d~~~~~~ll~~~l~P~~~~~~~gi~~~~L~~~~~~~~g~~~~~~~ 81 (561)
T 2cfm_A 2 RYLELAQLYQKLEKTTMKLIKTRLVADFLKKVPDDHLEFIPYLILGEVFPEWDERELGVGEKLLIKAVAMATGIDAKEIE 81 (561)
T ss_dssp BHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHSCGGGTTTHHHHHTTCSSCTTCCCCCCCCHHHHHHHHHHHHSCCHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCchHHHHHHHHHhCCCCccccccccCCCHHHHHHHHHHHHCcCHHHHH
Confidence 4567788899999999999999999999999999999999999987663 69999998876532 245
Q ss_pred HHHhhhCCHHHHHHHHhhh
Q 001083 191 DLFNVTCDLKLVCEKLKDR 209 (1160)
Q Consensus 191 ~~~~~~~DL~~V~~~L~~~ 209 (1160)
+.|....||+.++..+...
T Consensus 82 ~~~~~~GDlg~~~~~~~~~ 100 (561)
T 2cfm_A 82 ESVKDTGDLGESIALAVKK 100 (561)
T ss_dssp HHHHHHSCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHhcc
Confidence 6788999999999988754
No 111
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.08 E-value=1.5 Score=43.82 Aligned_cols=96 Identities=18% Similarity=0.310 Sum_probs=62.8
Q ss_pred ccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEc-cCC-CceEEEEecCCCcccchhhhHHHHHHHhhh
Q 001083 802 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCN-NLA-NATHVVVLSVLGYDVNFNSLTESFTAREKH 879 (1160)
Q Consensus 802 ~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~-~ls-~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~ 879 (1160)
.=.+|.++|+-...+ . ..|+++ .++.++.--|+.-.. ... +.||.|+.+-++...+-+-+|. +|
T Consensus 160 tdmsgitvclgpldp-l----keisdl---qisqclshigarplqrhvaidtthfvcndldneesneelira------kh 225 (290)
T 4gns_A 160 TDMSGITVCLGPLDP-L----KEISDL---QISQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELIRA------KH 225 (290)
T ss_dssp TCCTTCCEEECCCCG-G----GTCCHH---HHHHHHHHTTCCCCBSSCCTTCCEEECSCCTTCTTCHHHHHH------HH
T ss_pred ccccCceEEecCCCh-h----hhhhhc---cHHHHHHHhCCchhhheeeeecceeeecCCCcccchHHHHhh------hc
Confidence 347788999876543 1 123333 455667767765433 344 6999999865433222222232 12
Q ss_pred hccCCccEEeccchHHHHHHcCCccCCCCCCCCCCC
Q 001083 880 LLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTG 915 (1160)
Q Consensus 880 ~~~~~~~~IVt~~Wl~eci~~~~~v~Ee~Y~v~~~~ 915 (1160)
..+.||.++|+..|--+.++|....|.+....
T Consensus 226 ----nnipivrpewvracevekrivgvrgfyldadq 257 (290)
T 4gns_A 226 ----NNIPIVRPEWVRACEVEKRIVGVRGFYLDADQ 257 (290)
T ss_dssp ----TTCCEECTHHHHHHHHTTSCCCSGGGBTTSCG
T ss_pred ----cCCCccCHHHHHHHhhhheeeeeeeEEEcccH
Confidence 36789999999999999999999998876654
No 112
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=83.13 E-value=1.6 Score=43.50 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=40.5
Q ss_pred CccCC-CeEEEEccCCCCCCChhHHH-HHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCC
Q 001083 801 WSCFH-GCCIYFYHSTEPLSPDWEVL-LGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVL 860 (1160)
Q Consensus 801 ~~lF~-gc~~yl~~~~~~~~~d~~~i-~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~ 860 (1160)
..+|. +++|||.............. ..-...+|++.+...|+++..-++ +|||||..-+.
T Consensus 56 Rkifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R~i 118 (160)
T 3qbz_A 56 KKIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSV 118 (160)
T ss_dssp HHHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESSCS
T ss_pred HHhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecCcC
Confidence 45797 89999998653211111110 111234577888999999999999 59999997654
No 113
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=82.81 E-value=1.4 Score=47.37 Aligned_cols=69 Identities=13% Similarity=0.273 Sum_probs=48.3
Q ss_pred HHHHhcCCEEEccCC---CceEEEEecCCCcccchhhhHHHHHHHhhhhccCCcc-EEeccchHHHHHHc---CC-----
Q 001083 835 LEISFHGGKVCNNLA---NATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKL-HVVRSQWLEDCLAK---EQ----- 902 (1160)
Q Consensus 835 ~~I~~~GG~v~~~ls---~vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~IVt~~Wl~eci~~---~~----- 902 (1160)
+.++..|=+++++++ .|+|||.|... +. ...-.+| ..... +||+++||.+|++. +.
T Consensus 41 ~~Lr~LGI~Iv~d~~~~~~~n~LiAPkil-RT---~KFL~sL--------a~~P~~~il~p~FI~~~Lk~ih~~~~~~~~ 108 (256)
T 3t7k_A 41 EILNQLGIKIFDNIKETDKLNCIFAPKIL-RT---EKFLKSL--------SFEPLKFALKPEFIIDLLKQIHSKKDKLSQ 108 (256)
T ss_dssp HHHHHTTEEECSSCCGGGCCCEEECSSCC-CB---HHHHHHT--------TSTTCCEEECTHHHHHHHHHHC-------C
T ss_pred HHHHHcCeEEEecCcccCCCCEEEcCchh-hH---HHHHHHh--------ccCccceEeCHHHHHHHHHHhhcCCccccc
Confidence 578899999999995 59999998654 21 1111222 11222 69999999999988 77
Q ss_pred -ccCCCCCCCCCCC
Q 001083 903 -KSEEYEYSLKPTG 915 (1160)
Q Consensus 903 -~v~Ee~Y~v~~~~ 915 (1160)
.++.++|.++...
T Consensus 109 ~~l~~~dY~L~d~~ 122 (256)
T 3t7k_A 109 ININLFDYEINGIN 122 (256)
T ss_dssp CCCCSSTTBCTTCC
T ss_pred ccCChhhccCCCcc
Confidence 8889999876554
No 114
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=81.39 E-value=1.3 Score=55.06 Aligned_cols=87 Identities=14% Similarity=0.281 Sum_probs=72.2
Q ss_pred CCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh---CCHHHHHHHHHHHhhhh-------ccCCcccccccccCc---
Q 001083 121 SGGLTIKELNDLLDRLASSENRAEKISVLSTLIKK---TNAQEMKWIIMIILKDL-------KLGISEKSIFHEFHP--- 187 (1160)
Q Consensus 121 ~~~LTi~eVn~~Ld~LA~~~~~~~k~~il~~ll~~---~t~~E~k~l~RiIlkdL-------riGi~e~til~~~hp--- 187 (1160)
.+++...++-+++++|+..+++.+|..+|..+|.. ++|.++-|.+.++++.| .+||+++++.+++..
T Consensus 53 ~~~~~~~~la~~~~~i~~t~~r~~k~~~l~~~~~~~~~~~~~dl~~~v~ll~g~l~P~~~~~elgi~~~~L~k~i~~~~g 132 (688)
T 1x9n_A 53 GQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATG 132 (688)
T ss_dssp TSCCBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTCSSCGGGCCCCCCCHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcCChHHHHHHHHHHcCCCCccccccccCcChHHHHHHHHHHHC
Confidence 35788999999999999999999999999999998 79999999999999775 479999998875522
Q ss_pred ----cHHHHHhhhCCHHHHHHHHh
Q 001083 188 ----DAEDLFNVTCDLKLVCEKLK 207 (1160)
Q Consensus 188 ----da~~~~~~~~DL~~V~~~L~ 207 (1160)
...+.|....||+.||..+.
T Consensus 133 ~~~~~~~~~~~~~GDlg~va~~~~ 156 (688)
T 1x9n_A 133 RQLESVRAEAAEKGDVGLVAENSR 156 (688)
T ss_dssp CCHHHHHHHHHHHTCHHHHTCC--
T ss_pred cCHHHHHHHHHhcCCHHHHHHHHH
Confidence 24567888999999987554
No 115
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=77.47 E-value=4.8 Score=39.87 Aligned_cols=61 Identities=15% Similarity=0.091 Sum_probs=40.1
Q ss_pred CCccC-CCeEEEEccCCCCCCCh-hHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCC
Q 001083 800 KWSCF-HGCCIYFYHSTEPLSPD-WEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVL 860 (1160)
Q Consensus 800 ~~~lF-~gc~~yl~~~~~~~~~d-~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~ 860 (1160)
+..|. ++-+|||+.-....... ...-.....++|++.|...||+|.+-++ +|||||...+.
T Consensus 17 WrkIM~r~s~iYFdt~~~~~~~~~~~~~l~k~~~llkk~f~~LGa~I~~FFd~~VTiIITrR~~ 80 (151)
T 3oq0_A 17 RGSHMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSV 80 (151)
T ss_dssp ----CCCCCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEESSCCTTCCEEEESSCG
T ss_pred HHHHhccCCEEEEeCCCcchhhHHHHHHHHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCCcC
Confidence 45577 89999999753211111 1111234567888999999999999998 59999997543
No 116
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=74.42 E-value=4.1 Score=45.32 Aligned_cols=60 Identities=13% Similarity=0.169 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCEEEccCCC-ceEEEEecCCCcccchhhhHHHHHHHhhhhccCCccEEeccchHHHHHHc
Q 001083 831 RRLKLEISFHGGKVCNNLAN-ATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAK 900 (1160)
Q Consensus 831 ~~l~~~I~~~GG~v~~~ls~-vTHVVV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~IVt~~Wl~eci~~ 900 (1160)
..|+..+..+||++++...+ |||||+..-.......+-|..-+ ...+||+++||.+....
T Consensus 127 ~~L~~~L~~LGik~v~~~~detTHlVm~krnT~KvTvK~L~ALI----------~gkPIV~~~Fl~al~~~ 187 (325)
T 3huf_A 127 SQWASNLNLLGIPTGLRDSDATTHFVMNRQAGSSITVGTMYAFL----------KKTVIIDDSYLQYLSTV 187 (325)
T ss_dssp HHHHHHHHTTTCCEESSCCTTCCEEECCCCCSSCCCHHHHHHHH----------TTCEEECHHHHHHHTTC
T ss_pred HHHHHHHHHcCCEEEEccCCCEEEEEEeccccccchHHHHHHHH----------CCCcEecHHHHHHHHHh
Confidence 35888999999999944244 99999964221222223333211 24599999999997643
No 117
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=74.24 E-value=7.1 Score=37.92 Aligned_cols=56 Identities=14% Similarity=0.092 Sum_probs=38.6
Q ss_pred CCeEEEEccCCCCCCCh-hHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCC
Q 001083 805 HGCCIYFYHSTEPLSPD-WEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVL 860 (1160)
Q Consensus 805 ~gc~~yl~~~~~~~~~d-~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVVV~~~~ 860 (1160)
+...|||++-....... ...-.+-..++|++.+...||+|.+-++ +|||||...+.
T Consensus 6 r~s~iyfd~~~~~~~~~~~~~k~~k~~~llk~~f~~LGa~I~~FFd~~VTiiITrR~~ 63 (134)
T 3oq4_A 6 RDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSV 63 (134)
T ss_dssp TTCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESSCG
T ss_pred ccceEEecCCchHHHHHHHHHhhHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCCcC
Confidence 45689999864311011 1111234568899999999999999998 59999997543
No 118
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=59.46 E-value=10 Score=40.65 Aligned_cols=87 Identities=21% Similarity=0.294 Sum_probs=64.3
Q ss_pred CCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-------------CHHHHHHHHHHHhhhhc-----cCCccccccc
Q 001083 122 GGLTIKELNDLLDRLASSENRAEKISVLSTLIKKT-------------NAQEMKWIIMIILKDLK-----LGISEKSIFH 183 (1160)
Q Consensus 122 ~~LTi~eVn~~Ld~LA~~~~~~~k~~il~~ll~~~-------------t~~E~k~l~RiIlkdLr-----iGi~e~til~ 183 (1160)
.++.-.++-++|++|+..+++.+|..+|..+|... .+...-.++|+|+=+.. .|++++++.+
T Consensus 12 ~~~~F~~l~~~~e~Ie~ts~rl~k~~il~~f~~~~~~~~~~l~~~~~~~~~dly~~l~ll~P~~d~~r~~ygi~e~~L~K 91 (240)
T 4htp_A 12 SHVPFADLCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDALHKNHKDVTDSFYPAMRLILPQLERERMAYGIKETMLAK 91 (240)
T ss_dssp GTSBHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTTTCSSCCCCSHHHHHHHSGGGCCSSCCCCCCHHHHHH
T ss_pred cCCcHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccccccCcccCcchHHHHHHHhCccccccccccCCCHHHHHH
Confidence 46778889999999999999999999999999873 35567888898887652 8999999887
Q ss_pred cc----C--c---cHHH---------HHhhhCCHHHHHHHHhh
Q 001083 184 EF----H--P---DAED---------LFNVTCDLKLVCEKLKD 208 (1160)
Q Consensus 184 ~~----h--p---da~~---------~~~~~~DL~~V~~~L~~ 208 (1160)
++ + + ++.. .|.-..||+.||..+..
T Consensus 92 ai~~~~g~~~~~~~~~~L~~wk~~~~~~~~~GDlg~va~~~~~ 134 (240)
T 4htp_A 92 LYIELLNLPRDGKDALKLLNYRTPTGTHGDAGDFAMIAYFVLK 134 (240)
T ss_dssp HHHHHTTCCTTSHHHHHHHTC----------CCHHHHHHHHHT
T ss_pred HHHHHHCCCcchHHHHHHHhccccccccccCCCHHHHHHHHHH
Confidence 54 2 1 2222 34456799999988753
No 119
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=42.33 E-value=53 Score=39.80 Aligned_cols=86 Identities=14% Similarity=0.151 Sum_probs=66.0
Q ss_pred CCCcHHHHHHHHHHHHhhCChHHHHHHHHHHHhhcCCCchHhhhHhhcCCCCCcCcccCCCCHHHHHHHHHHHhCCCcCh
Q 001083 5 EETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDS 84 (1160)
Q Consensus 5 ~~~~F~~l~~l~e~i~~~~~~~~K~~~l~~~l~~~~~~~d~~p~lrLllP~~d~er~~ygike~~L~k~~~~~~gl~~~s 84 (1160)
.++.-.++-+.|++|...++...+..+|..++... .+.+.-.++|+|+-++. .|++++++..+++.
T Consensus 116 ~~LTv~~V~~~L~~ia~~~g~~sq~~~l~~l~~~~-~~~E~k~l~R~i~~~lr-----iG~~e~~vl~a~~~-------- 181 (579)
T 3l2p_A 116 SLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRC-TANDLKCIIRLIKHDLK-----MNSGAKHVLDALDP-------- 181 (579)
T ss_dssp CCCBHHHHHHHHHHHHTCCSHHHHHHHHHHHHTTC-CSHHHHHHHHHHTTCCS-----SSCCHHHHHHTTCT--------
T ss_pred CCccHHHHHHHHHHHHhccCcHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhhh-----cccchhHHHHHhCH--------
Confidence 46788999999999999998887788899988765 57889999999998873 59999888776642
Q ss_pred HHHHHHhhhhcCCCCCCCCCHHHHHHHHh
Q 001083 85 ADAVRLINWRKGGAAPNAGNFPMVAAEVL 113 (1160)
Q Consensus 85 ~~~~~L~~wk~~~~~~~~GD~~~~a~~vl 113 (1160)
++.++.+ .++||+.++..++
T Consensus 182 -~a~~~~~--------~~~~l~~v~~~~~ 201 (579)
T 3l2p_A 182 -NAYEAFK--------ASRNLQDVVERVL 201 (579)
T ss_dssp -THHHHHH--------HSCCHHHHHHHHH
T ss_pred -HHHHHHh--------hcCCHHHHHHHHH
Confidence 2323322 2568888776654
No 120
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=36.16 E-value=32 Score=34.36 Aligned_cols=49 Identities=16% Similarity=0.252 Sum_probs=35.7
Q ss_pred Cccc-CeEEEEEcCCCC-CC---hHH-------HHHHHHHcCCEEEecCCCCceEEEEecC
Q 001083 656 SIFS-DMVFYFVNVPPA-YS---LDS-------LHKMVVENGGTFSMNLNNSVTHCVAADN 704 (1160)
Q Consensus 656 ~lF~-G~~F~vv~~~~~-~~---k~e-------L~klI~~~GG~~v~n~~~~~Th~Ia~~~ 704 (1160)
.+|. ++.||+-+.++. .+ +.+ |.+-+...|+++++-++..+||+|..-+
T Consensus 57 kifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R~ 117 (160)
T 3qbz_A 57 KIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRS 117 (160)
T ss_dssp HHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESSC
T ss_pred HhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecCc
Confidence 6887 899999765532 22 222 3356679999999999989999997544
No 121
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=25.60 E-value=67 Score=30.52 Aligned_cols=34 Identities=35% Similarity=0.546 Sum_probs=27.4
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEec
Q 001083 655 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMN 691 (1160)
Q Consensus 655 s~lF~G~~F~vv~~~~~~~k~eL~klI~~~GG~~v~n 691 (1160)
..||+|.+|++++-. ....|..+|...||...-.
T Consensus 11 ~~LF~GKtFvFLn~K---Q~kkl~~aV~~~GG~~~l~ 44 (118)
T 2k2w_A 11 KSIFKDKVFLFLNAK---QYKKLSPAVLFGGGKTDLL 44 (118)
T ss_dssp SCSSTTCEEEESCSS---THHHHHHHHHHTTCEEECC
T ss_pred HhhccCCEEEEeCHH---HHHHHHHHHHhcCceEEec
Confidence 469999999998754 3567889999999998643
No 122
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=24.44 E-value=30 Score=23.62 Aligned_cols=16 Identities=50% Similarity=0.775 Sum_probs=12.4
Q ss_pred cccccCCCCCCCcccc
Q 001083 970 GKRKRGRPAGGSAKKR 985 (1160)
Q Consensus 970 ~~~~~~~~~~~~~~~~ 985 (1160)
.+|-||||.|+-+|..
T Consensus 4 pKrpRgRpkGSKNk~~ 19 (26)
T 2ezd_A 4 PKRPRGRPKGSKNKGA 19 (26)
T ss_dssp CCCCSSCCTTCCCCSC
T ss_pred CcCCCCCcCcccccCc
Confidence 3678999999877654
No 123
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=20.09 E-value=1.1e+02 Score=29.06 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=29.4
Q ss_pred CCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccC
Q 001083 800 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNL 848 (1160)
Q Consensus 800 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~l 848 (1160)
...||+|-+|.|..-. ++.+|...|.++||.+...-
T Consensus 10 ~~~LF~GKtFvFLn~K-------------Q~kkl~~aV~~~GG~~~l~~ 45 (118)
T 2k2w_A 10 RKSIFKDKVFLFLNAK-------------QYKKLSPAVLFGGGKTDLLM 45 (118)
T ss_dssp CSCSSTTCEEEESCSS-------------THHHHHHHHHHTTCEEECCS
T ss_pred HHhhccCCEEEEeCHH-------------HHHHHHHHHHhcCceEEecc
Confidence 3569999999999743 26789999999999998763
Done!