BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001085
         (1160 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
            Chicken Gizzard Smooth Muscle Myosin With Regulatory
            Light Chain In The Dephosphorylated State. Only C Alphas
            Provided For Regulatory Light Chain. Only Backbone Atoms
            Provided For S2 Fragment.
 pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
            Chicken Gizzard Smooth Muscle Myosin With Regulatory
            Light Chain In The Dephosphorylated State. Only C Alphas
            Provided For Regulatory Light Chain. Only Backbone Atoms
            Provided For S2 Fragment
          Length = 1184

 Score = 36.6 bits (83), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 79/149 (53%), Gaps = 19/149 (12%)

Query: 555  ESLENELKIKSKDLSDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQI---- 610
            ES+ +EL+++ K    S   + +++  +EG +S+L +Q  E    QA I EL++Q+    
Sbjct: 1038 ESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAEL---QAQIAELKAQLAKKE 1094

Query: 611  ---EALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQAQVYEADLEVVTRAKVEQE 667
               +A    L++++   +++L  I+ELE++I +L+E+LE          E   R K E++
Sbjct: 1095 EELQAALARLEDETSQKNNALKKIRELESHISDLQEDLES---------EKAARNKAEKQ 1145

Query: 668  QRAIQAEETLRKTRLKNANTAERLQEEFR 696
            +R +  E    KT L++       Q+E R
Sbjct: 1146 KRDLSEELEALKTELEDTLDTTATQQELR 1174


>pdb|1SNZ|A Chain A, Crystal Structure Of Apo Human Galactose Mutarotase
 pdb|1SNZ|B Chain B, Crystal Structure Of Apo Human Galactose Mutarotase
 pdb|1SO0|A Chain A, Crystal Structure Of Human Galactose Mutarotase Complexed
            With Galactose
 pdb|1SO0|B Chain B, Crystal Structure Of Human Galactose Mutarotase Complexed
            With Galactose
 pdb|1SO0|C Chain C, Crystal Structure Of Human Galactose Mutarotase Complexed
            With Galactose
 pdb|1SO0|D Chain D, Crystal Structure Of Human Galactose Mutarotase Complexed
            With Galactose
          Length = 344

 Score = 30.8 bits (68), Expect = 5.2,   Method: Composition-based stats.
 Identities = 14/25 (56%), Positives = 18/25 (72%)

Query: 1122 ELKDMQERYSEISLKFAEVEGERQK 1146
            E+KD Q R S++ L FAE+EG  QK
Sbjct: 46   EVKDRQGRASDVVLGFAELEGYLQK 70


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.307    0.124    0.321 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,377,895
Number of Sequences: 62578
Number of extensions: 1037974
Number of successful extensions: 3769
Number of sequences better than 100.0: 135
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 3527
Number of HSP's gapped (non-prelim): 326
length of query: 1160
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1051
effective length of database: 8,152,335
effective search space: 8568104085
effective search space used: 8568104085
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 57 (26.6 bits)