Query 001085
Match_columns 1160
No_of_seqs 76 out of 78
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 15:24:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001085.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001085hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10358 NT-C2: N-terminal C2 99.8 1.8E-20 3.9E-25 181.5 10.1 135 11-145 2-140 (143)
2 KOG0161 Myosin class II heavy 99.6 1.8E-08 3.9E-13 131.3 78.5 563 292-902 837-1426(1930)
3 KOG0161 Myosin class II heavy 99.6 4.6E-08 9.9E-13 127.6 78.5 232 681-929 1317-1565(1930)
4 TIGR02169 SMC_prok_A chromosom 99.5 5.2E-07 1.1E-11 112.6 75.1 56 1103-1158 961-1016(1164)
5 KOG4674 Uncharacterized conser 99.5 1.6E-06 3.4E-11 112.4 78.1 564 311-941 458-1097(1822)
6 TIGR00606 rad50 rad50. This fa 99.5 1.2E-06 2.6E-11 113.2 77.4 158 767-937 795-960 (1311)
7 TIGR00606 rad50 rad50. This fa 99.5 4.3E-08 9.3E-13 126.1 63.9 260 653-925 583-864 (1311)
8 KOG4674 Uncharacterized conser 99.4 1.5E-06 3.3E-11 112.5 70.3 630 281-936 685-1462(1822)
9 TIGR02168 SMC_prok_B chromosom 99.4 4.1E-06 9E-11 104.1 72.4 26 1128-1153 993-1018(1179)
10 COG1196 Smc Chromosome segrega 99.3 3.6E-05 7.7E-10 98.8 75.2 211 723-940 672-885 (1163)
11 PRK02224 chromosome segregatio 99.3 3.1E-05 6.7E-10 95.9 67.5 111 482-613 335-445 (880)
12 PRK02224 chromosome segregatio 99.2 1.7E-05 3.6E-10 98.2 62.4 83 794-876 473-558 (880)
13 TIGR02168 SMC_prok_B chromosom 99.2 5.2E-05 1.1E-09 94.6 75.6 16 33-48 23-38 (1179)
14 PRK03918 chromosome segregatio 99.2 4.8E-05 1E-09 93.9 66.0 56 728-784 528-583 (880)
15 TIGR02169 SMC_prok_A chromosom 99.2 6.2E-05 1.3E-09 94.4 70.0 40 574-613 449-488 (1164)
16 PF10174 Cast: RIM-binding pro 99.1 0.00021 4.6E-09 88.5 64.6 352 650-1023 304-716 (775)
17 PRK03918 chromosome segregatio 99.0 0.00047 1E-08 85.3 62.8 31 745-775 454-484 (880)
18 COG1196 Smc Chromosome segrega 98.9 0.0013 2.7E-08 85.1 75.4 201 717-924 673-883 (1163)
19 PF05701 WEMBL: Weak chloropla 98.8 0.0009 1.9E-08 79.9 51.2 427 566-1021 62-513 (522)
20 PF10174 Cast: RIM-binding pro 98.7 0.0025 5.5E-08 79.3 64.4 284 335-660 114-423 (775)
21 KOG4673 Transcription factor T 98.5 0.007 1.5E-07 73.4 60.2 360 555-934 526-955 (961)
22 PF12128 DUF3584: Protein of u 98.5 0.017 3.7E-07 75.3 61.4 33 1100-1132 895-927 (1201)
23 PF01576 Myosin_tail_1: Myosin 98.5 3E-08 6.5E-13 123.0 -0.1 189 825-1020 572-760 (859)
24 PF07888 CALCOCO1: Calcium bin 98.4 0.0025 5.5E-08 76.4 39.6 145 788-935 296-455 (546)
25 PF00038 Filament: Intermediat 98.4 0.0027 5.8E-08 70.1 37.3 276 481-817 3-290 (312)
26 PF12128 DUF3584: Protein of u 98.4 0.027 5.8E-07 73.5 69.0 35 397-431 356-390 (1201)
27 PRK01156 chromosome segregatio 98.4 0.024 5.2E-07 71.3 61.4 59 878-936 669-727 (895)
28 KOG4643 Uncharacterized coiled 98.3 0.037 7.9E-07 69.8 51.0 156 383-610 174-331 (1195)
29 PF07888 CALCOCO1: Calcium bin 98.2 0.013 2.8E-07 70.5 39.6 96 828-934 372-467 (546)
30 KOG0996 Structural maintenance 98.2 0.057 1.2E-06 69.1 61.9 167 775-941 862-1042(1293)
31 PF00038 Filament: Intermediat 98.2 0.0045 9.9E-08 68.3 32.5 125 633-778 166-290 (312)
32 PRK01156 chromosome segregatio 98.2 0.053 1.2E-06 68.3 61.5 30 894-923 633-662 (895)
33 KOG0996 Structural maintenance 98.2 0.021 4.5E-07 72.9 40.7 170 709-913 431-600 (1293)
34 KOG4643 Uncharacterized coiled 98.1 0.064 1.4E-06 67.8 42.7 137 789-925 422-558 (1195)
35 PF05701 WEMBL: Weak chloropla 98.1 0.061 1.3E-06 64.7 45.3 346 577-944 45-419 (522)
36 PF01576 Myosin_tail_1: Myosin 98.1 7.3E-07 1.6E-11 111.0 0.0 25 1105-1129 832-856 (859)
37 KOG0976 Rho/Rac1-interacting s 98.0 0.088 1.9E-06 65.2 42.8 69 577-645 124-192 (1265)
38 PF05557 MAD: Mitotic checkpoi 98.0 4.5E-06 9.7E-11 102.1 3.9 137 884-1020 476-623 (722)
39 KOG0612 Rho-associated, coiled 97.9 0.13 2.8E-06 66.4 39.6 113 789-913 667-786 (1317)
40 KOG0978 E3 ubiquitin ligase in 97.8 0.21 4.5E-06 62.0 62.7 130 293-423 48-190 (698)
41 KOG0977 Nuclear envelope prote 97.8 0.059 1.3E-06 65.1 33.5 118 706-830 258-380 (546)
42 KOG0977 Nuclear envelope prote 97.6 0.15 3.2E-06 61.9 33.1 338 548-938 27-376 (546)
43 KOG4593 Mitotic checkpoint pro 97.5 0.47 1E-05 58.7 54.5 35 1106-1140 599-633 (716)
44 PRK04778 septation ring format 97.5 0.46 1E-05 57.8 41.3 78 565-642 190-269 (569)
45 PF05483 SCP-1: Synaptonemal c 97.5 0.6 1.3E-05 57.7 53.5 243 550-817 238-520 (786)
46 PF09726 Macoilin: Transmembra 97.4 0.06 1.3E-06 66.9 28.0 144 647-809 502-656 (697)
47 PHA02562 46 endonuclease subun 97.4 0.039 8.4E-07 65.4 25.4 136 798-937 215-356 (562)
48 KOG0971 Microtubule-associated 97.3 0.94 2E-05 57.4 38.3 173 751-928 326-507 (1243)
49 PF05557 MAD: Mitotic checkpoi 97.3 0.00038 8.1E-09 85.6 7.3 35 1106-1140 605-639 (722)
50 PRK04863 mukB cell division pr 97.3 1.5 3.3E-05 59.1 67.6 121 476-597 457-599 (1486)
51 PF15070 GOLGA2L5: Putative go 97.3 0.88 1.9E-05 56.3 41.9 272 577-861 26-313 (617)
52 PF05622 HOOK: HOOK protein; 97.2 6.8E-05 1.5E-09 91.9 0.0 78 916-1001 574-652 (713)
53 PRK04863 mukB cell division pr 97.2 2 4.4E-05 57.9 49.0 104 763-866 553-663 (1486)
54 KOG0971 Microtubule-associated 97.1 1.6 3.5E-05 55.5 36.8 166 700-865 304-472 (1243)
55 PHA02562 46 endonuclease subun 97.1 0.16 3.6E-06 60.2 25.5 60 885-944 332-391 (562)
56 PF09730 BicD: Microtubule-ass 97.1 1.6 3.5E-05 54.9 37.2 60 847-906 397-463 (717)
57 KOG0946 ER-Golgi vesicle-tethe 97.0 0.32 7E-06 60.8 27.0 289 702-1026 620-941 (970)
58 PRK11637 AmiB activator; Provi 96.9 0.85 1.8E-05 53.5 29.2 53 850-902 186-238 (428)
59 KOG0995 Centromere-associated 96.9 0.46 1E-05 57.7 27.1 242 677-945 226-473 (581)
60 KOG1029 Endocytic adaptor prot 96.9 1.4 3E-05 55.3 31.1 46 21-83 21-67 (1118)
61 PF05622 HOOK: HOOK protein; 96.9 0.00023 4.9E-09 87.4 0.0 89 331-438 196-284 (713)
62 COG0419 SbcC ATPase involved i 96.9 2.5 5.4E-05 54.2 68.4 39 885-923 690-728 (908)
63 KOG0946 ER-Golgi vesicle-tethe 96.9 0.48 1E-05 59.4 27.2 212 701-940 727-947 (970)
64 PF05667 DUF812: Protein of un 96.9 1.2 2.6E-05 55.0 30.7 199 474-709 327-535 (594)
65 PF04849 HAP1_N: HAP1 N-termin 96.8 0.22 4.8E-06 56.7 22.5 143 572-746 159-304 (306)
66 COG0419 SbcC ATPase involved i 96.8 2.8 6.2E-05 53.7 69.5 55 885-941 656-711 (908)
67 KOG0612 Rho-associated, coiled 96.8 3.3 7.3E-05 54.3 55.4 65 293-357 472-537 (1317)
68 KOG0994 Extracellular matrix g 96.7 3.5 7.6E-05 53.8 46.1 134 549-697 1419-1553(1758)
69 PF05010 TACC: Transforming ac 96.6 1.4 3.1E-05 48.0 25.3 169 611-791 26-202 (207)
70 PF09730 BicD: Microtubule-ass 96.4 4.3 9.3E-05 51.3 35.5 142 610-764 267-412 (717)
71 KOG0933 Structural maintenance 96.4 4.9 0.00011 52.0 57.2 33 24-62 15-47 (1174)
72 KOG0964 Structural maintenance 96.4 5.2 0.00011 51.6 53.9 71 769-842 693-763 (1200)
73 PRK11637 AmiB activator; Provi 96.4 3.2 6.9E-05 48.8 28.8 68 578-645 45-112 (428)
74 KOG4593 Mitotic checkpoint pro 96.3 4.7 0.0001 50.4 57.2 378 517-992 224-621 (716)
75 PRK04778 septation ring format 96.2 4.8 0.0001 49.3 49.8 38 652-689 69-107 (569)
76 KOG4673 Transcription factor T 96.1 6 0.00013 49.5 47.5 79 856-935 705-783 (961)
77 KOG0995 Centromere-associated 96.1 5.5 0.00012 49.0 40.0 29 480-508 226-254 (581)
78 PF05483 SCP-1: Synaptonemal c 96.1 6.1 0.00013 49.4 66.0 76 662-737 524-599 (786)
79 PF09726 Macoilin: Transmembra 96.1 5.2 0.00011 50.5 29.9 48 815-862 610-657 (697)
80 PF06160 EzrA: Septation ring 96.1 5.5 0.00012 48.8 43.7 81 566-646 187-269 (560)
81 KOG0018 Structural maintenance 96.0 8.2 0.00018 50.4 48.6 173 552-725 655-845 (1141)
82 PF06160 EzrA: Septation ring 96.0 5.9 0.00013 48.6 44.0 250 624-911 96-372 (560)
83 PF15619 Lebercilin: Ciliary p 95.9 3 6.6E-05 44.9 23.3 147 773-932 45-192 (194)
84 KOG0933 Structural maintenance 95.7 11 0.00023 49.2 57.7 139 294-441 252-391 (1174)
85 PRK09039 hypothetical protein; 95.7 0.38 8.2E-06 55.4 16.9 69 863-931 117-185 (343)
86 TIGR03185 DNA_S_dndD DNA sulfu 95.5 9.3 0.0002 47.5 38.6 39 825-863 426-464 (650)
87 PF14915 CCDC144C: CCDC144C pr 95.5 6.5 0.00014 45.2 34.9 226 574-824 64-299 (305)
88 PF15070 GOLGA2L5: Putative go 95.2 12 0.00026 46.8 40.7 89 791-903 409-497 (617)
89 KOG0964 Structural maintenance 95.2 15 0.00032 47.8 58.2 225 704-933 657-927 (1200)
90 KOG0978 E3 ubiquitin ligase in 95.1 13 0.00029 46.9 57.9 145 474-649 166-313 (698)
91 PF00261 Tropomyosin: Tropomyo 95.1 6.5 0.00014 43.1 28.4 39 604-642 11-49 (237)
92 PF14662 CCDC155: Coiled-coil 95.0 5.1 0.00011 43.5 21.3 142 690-857 19-167 (193)
93 KOG0994 Extracellular matrix g 94.8 21 0.00045 47.3 45.0 23 675-697 1629-1651(1758)
94 PF15397 DUF4618: Domain of un 94.8 9.3 0.0002 43.2 29.8 207 643-909 23-233 (258)
95 PF09789 DUF2353: Uncharacteri 94.5 12 0.00026 43.5 25.4 131 792-929 82-228 (319)
96 PF09755 DUF2046: Uncharacteri 94.5 12 0.00026 43.4 27.7 52 969-1020 227-278 (310)
97 PF04849 HAP1_N: HAP1 N-termin 94.5 12 0.00026 43.3 23.9 71 848-919 234-305 (306)
98 PF10473 CENP-F_leu_zip: Leuci 94.4 2.6 5.7E-05 43.6 16.7 81 729-817 7-87 (140)
99 PF15619 Lebercilin: Ciliary p 94.3 7.7 0.00017 41.9 20.8 140 791-947 14-154 (194)
100 COG5185 HEC1 Protein involved 94.2 17 0.00038 44.1 25.1 25 713-737 266-290 (622)
101 COG1579 Zn-ribbon protein, pos 94.2 6.9 0.00015 43.7 20.6 68 875-944 83-150 (239)
102 COG4942 Membrane-bound metallo 94.2 17 0.00037 43.7 28.6 85 574-658 39-123 (420)
103 PF09789 DUF2353: Uncharacteri 94.1 14 0.00031 42.8 24.0 202 487-746 14-217 (319)
104 PF14662 CCDC155: Coiled-coil 94.1 7.4 0.00016 42.3 20.0 129 793-942 33-161 (193)
105 COG1340 Uncharacterized archae 94.0 15 0.00032 42.4 28.6 207 718-939 34-249 (294)
106 PF00261 Tropomyosin: Tropomyo 94.0 12 0.00025 41.1 29.0 55 689-747 172-226 (237)
107 KOG0976 Rho/Rac1-interacting s 94.0 26 0.00055 45.0 46.0 27 398-424 104-130 (1265)
108 KOG0962 DNA repair protein RAD 93.9 34 0.00073 46.1 67.3 81 864-944 873-953 (1294)
109 PF10473 CENP-F_leu_zip: Leuci 93.8 6.4 0.00014 40.8 18.3 78 569-646 48-125 (140)
110 KOG0999 Microtubule-associated 93.8 23 0.00049 43.8 56.2 59 711-774 408-467 (772)
111 KOG0999 Microtubule-associated 93.7 23 0.0005 43.8 47.5 119 909-1039 596-723 (772)
112 PF12718 Tropomyosin_1: Tropom 93.7 4 8.7E-05 42.0 16.6 125 716-862 12-136 (143)
113 PRK09039 hypothetical protein; 92.9 6.7 0.00015 45.5 18.7 128 793-944 43-170 (343)
114 KOG0963 Transcription factor/C 92.8 33 0.00071 43.0 32.2 185 574-776 146-343 (629)
115 PF05911 DUF869: Plant protein 92.6 40 0.00087 43.4 31.9 120 726-872 46-165 (769)
116 PF08317 Spc7: Spc7 kinetochor 92.6 24 0.00051 40.6 25.7 138 820-988 156-293 (325)
117 PF10481 CENP-F_N: Cenp-F N-te 92.3 25 0.00055 40.3 22.0 117 793-933 15-131 (307)
118 KOG0250 DNA repair protein RAD 92.2 51 0.0011 43.6 53.7 61 686-746 401-464 (1074)
119 COG5185 HEC1 Protein involved 92.1 36 0.00077 41.6 36.6 99 755-862 492-590 (622)
120 KOG0980 Actin-binding protein 92.0 49 0.0011 43.0 31.9 27 1010-1036 596-622 (980)
121 COG1579 Zn-ribbon protein, pos 91.9 26 0.00055 39.4 21.6 63 570-646 7-69 (239)
122 cd08389 C2A_Synaptotagmin-14_1 91.8 0.32 7E-06 47.5 5.7 95 23-125 24-123 (124)
123 PF06008 Laminin_I: Laminin Do 91.8 24 0.00053 39.1 28.1 121 548-684 20-143 (264)
124 COG4942 Membrane-bound metallo 91.6 38 0.00082 40.9 24.7 91 839-932 152-245 (420)
125 PLN03229 acetyl-coenzyme A car 91.4 11 0.00023 48.0 19.0 106 888-1020 576-683 (762)
126 PF13870 DUF4201: Domain of un 90.7 20 0.00044 37.5 17.8 121 794-921 4-129 (177)
127 PF12718 Tropomyosin_1: Tropom 90.7 21 0.00046 36.8 17.6 97 772-868 18-114 (143)
128 PF08317 Spc7: Spc7 kinetochor 90.5 38 0.00083 39.0 21.2 20 730-749 147-166 (325)
129 KOG1937 Uncharacterized conser 90.4 50 0.0011 40.2 26.0 207 378-647 254-487 (521)
130 PF15066 CAGE1: Cancer-associa 90.1 53 0.0012 40.1 22.8 51 886-936 414-464 (527)
131 TIGR03185 DNA_S_dndD DNA sulfu 90.1 60 0.0013 40.6 36.4 74 571-647 207-280 (650)
132 KOG0018 Structural maintenance 90.0 81 0.0018 41.9 59.4 230 719-956 653-915 (1141)
133 PF05667 DUF812: Protein of un 89.9 63 0.0014 40.6 32.3 59 717-779 425-483 (594)
134 KOG0979 Structural maintenance 89.7 61 0.0013 42.7 23.6 151 714-874 177-330 (1072)
135 TIGR01843 type_I_hlyD type I s 89.7 43 0.00093 38.3 20.8 52 918-970 246-298 (423)
136 PF06705 SF-assemblin: SF-asse 89.1 40 0.00087 37.2 28.8 167 574-746 35-211 (247)
137 TIGR01843 type_I_hlyD type I s 89.1 38 0.00083 38.7 19.9 19 914-932 249-267 (423)
138 PF09787 Golgin_A5: Golgin sub 88.6 69 0.0015 39.2 30.1 89 686-783 337-425 (511)
139 PF07926 TPR_MLP1_2: TPR/MLP1/ 88.6 28 0.00061 35.1 16.3 70 751-820 60-129 (132)
140 PF09755 DUF2046: Uncharacteri 87.2 66 0.0014 37.5 30.9 76 453-528 18-102 (310)
141 smart00787 Spc7 Spc7 kinetocho 87.2 65 0.0014 37.4 21.5 18 968-985 268-285 (312)
142 KOG0980 Actin-binding protein 87.1 1.1E+02 0.0024 40.0 32.0 74 738-811 433-509 (980)
143 PF13851 GAS: Growth-arrest sp 87.1 50 0.0011 35.9 21.8 74 569-642 23-99 (201)
144 cd08682 C2_Rab11-FIP_classI C2 86.9 1.6 3.5E-05 42.3 6.3 92 43-138 27-126 (126)
145 COG1340 Uncharacterized archae 86.5 71 0.0015 37.1 31.9 36 474-509 150-185 (294)
146 TIGR03007 pepcterm_ChnLen poly 86.4 75 0.0016 38.0 20.8 46 548-593 250-295 (498)
147 smart00787 Spc7 Spc7 kinetocho 86.4 71 0.0015 37.1 20.8 138 552-700 140-285 (312)
148 KOG0979 Structural maintenance 86.3 1.3E+02 0.0028 40.0 33.0 92 576-671 625-726 (1072)
149 cd04043 C2_Munc13_fungal C2 do 86.3 5.3 0.00011 38.4 9.4 110 21-142 7-123 (126)
150 KOG1029 Endocytic adaptor prot 86.2 1.2E+02 0.0026 39.4 32.6 36 883-918 556-591 (1118)
151 KOG0249 LAR-interacting protei 86.1 29 0.00064 44.0 17.3 65 700-768 66-130 (916)
152 cd04052 C2B_Tricalbin-like C2 85.9 1.8 3.8E-05 41.4 5.9 55 84-139 53-108 (111)
153 COG4477 EzrA Negative regulato 85.9 1E+02 0.0022 38.4 30.7 275 568-897 99-431 (570)
154 PF15254 CCDC14: Coiled-coil d 84.6 84 0.0018 40.6 20.3 23 721-743 390-412 (861)
155 PLN03229 acetyl-coenzyme A car 84.4 42 0.0009 43.0 17.9 27 738-764 603-629 (762)
156 PF13166 AAA_13: AAA domain 84.0 1.2E+02 0.0027 37.8 25.3 60 885-944 412-471 (712)
157 cd08376 C2B_MCTP_PRT C2 domain 83.8 3.5 7.6E-05 39.0 6.8 53 84-139 60-114 (116)
158 TIGR00634 recN DNA repair prot 83.7 1.2E+02 0.0026 37.4 27.0 28 849-876 347-374 (563)
159 PF07111 HCR: Alpha helical co 83.5 1.5E+02 0.0032 38.2 66.5 323 585-938 282-659 (739)
160 KOG0962 DNA repair protein RAD 83.4 1.9E+02 0.0042 39.5 66.4 236 682-929 784-1040(1294)
161 COG3883 Uncharacterized protei 83.0 94 0.002 35.6 22.1 140 573-731 59-217 (265)
162 PF09787 Golgin_A5: Golgin sub 82.9 1.3E+02 0.0027 37.0 33.6 123 609-766 195-318 (511)
163 PF08614 ATG16: Autophagy prot 82.9 14 0.00031 39.3 11.6 123 571-697 65-187 (194)
164 PF08614 ATG16: Autophagy prot 82.3 5.1 0.00011 42.6 8.0 107 707-817 70-179 (194)
165 KOG1853 LIS1-interacting prote 82.3 1E+02 0.0022 35.4 17.9 68 791-861 86-153 (333)
166 PF10186 Atg14: UV radiation r 82.1 83 0.0018 34.5 17.4 6 963-968 180-185 (302)
167 PF09728 Taxilin: Myosin-like 82.1 1.1E+02 0.0023 35.6 38.3 114 563-704 12-125 (309)
168 PF05266 DUF724: Protein of un 81.8 26 0.00057 37.9 13.1 68 841-908 117-184 (190)
169 KOG0963 Transcription factor/C 80.5 1.7E+02 0.0038 37.0 36.3 85 712-813 250-334 (629)
170 PF10146 zf-C4H2: Zinc finger- 80.2 34 0.00073 38.2 13.6 25 828-852 54-78 (230)
171 KOG1899 LAR transmembrane tyro 79.5 1.9E+02 0.0041 36.9 20.4 61 632-696 170-232 (861)
172 KOG0239 Kinesin (KAR3 subfamil 79.5 1E+02 0.0023 39.3 19.0 41 600-640 113-153 (670)
173 KOG0804 Cytoplasmic Zn-finger 79.4 25 0.00054 42.6 12.9 92 716-811 359-450 (493)
174 COG4372 Uncharacterized protei 79.2 1.6E+02 0.0034 35.7 26.6 22 677-702 125-146 (499)
175 PF04012 PspA_IM30: PspA/IM30 79.0 98 0.0021 33.3 21.8 62 709-774 82-143 (221)
176 KOG4360 Uncharacterized coiled 78.7 41 0.00088 41.5 14.4 103 622-746 198-303 (596)
177 cd08373 C2A_Ferlin C2 domain f 78.7 6.3 0.00014 38.2 6.7 60 84-144 56-120 (127)
178 KOG0993 Rab5 GTPase effector R 78.6 1.7E+02 0.0036 35.7 31.9 80 499-611 103-182 (542)
179 PF10234 Cluap1: Clusterin-ass 78.4 66 0.0014 36.8 15.3 75 568-642 185-259 (267)
180 cd08388 C2A_Synaptotagmin-4-11 78.3 3.8 8.3E-05 40.4 5.2 61 65-125 64-127 (128)
181 cd08391 C2A_C2C_Synaptotagmin_ 78.2 7.4 0.00016 36.8 6.9 52 85-138 68-120 (121)
182 PF04156 IncA: IncA protein; 78.2 56 0.0012 34.2 14.0 29 397-425 162-190 (191)
183 PF10481 CENP-F_N: Cenp-F N-te 78.1 35 0.00076 39.2 12.9 104 751-875 19-122 (307)
184 PF02183 HALZ: Homeobox associ 77.8 5.5 0.00012 34.1 5.2 41 890-930 5-45 (45)
185 PF04012 PspA_IM30: PspA/IM30 77.6 80 0.0017 34.0 15.2 45 770-814 11-55 (221)
186 PF12325 TMF_TATA_bd: TATA ele 77.3 55 0.0012 33.3 12.9 48 855-902 68-115 (120)
187 PRK10698 phage shock protein P 77.1 1.2E+02 0.0027 33.4 23.9 68 709-780 83-150 (222)
188 PF10498 IFT57: Intra-flagella 76.9 40 0.00086 39.8 13.6 135 688-846 193-327 (359)
189 KOG4809 Rab6 GTPase-interactin 76.8 2.1E+02 0.0046 36.0 38.8 131 464-661 314-452 (654)
190 PF09738 DUF2051: Double stran 76.8 45 0.00098 38.6 13.7 131 296-428 101-247 (302)
191 PF10168 Nup88: Nuclear pore c 76.5 1.2E+02 0.0025 39.1 18.4 31 896-926 684-714 (717)
192 PF04156 IncA: IncA protein; 76.3 72 0.0016 33.4 14.2 88 838-925 85-172 (191)
193 PF12795 MscS_porin: Mechanose 76.2 1.3E+02 0.0028 33.1 22.4 196 648-874 25-226 (240)
194 KOG0992 Uncharacterized conser 76.0 2.1E+02 0.0047 35.6 28.0 202 720-923 62-278 (613)
195 PF11559 ADIP: Afadin- and alp 75.7 69 0.0015 32.7 13.5 93 849-941 53-149 (151)
196 PF06818 Fez1: Fez1; InterPro 75.1 93 0.002 34.4 14.8 109 828-936 32-156 (202)
197 PF06548 Kinesin-related: Kine 75.0 2.1E+02 0.0047 35.2 27.4 32 611-642 326-357 (488)
198 cd04033 C2_NEDD4_NEDD4L C2 dom 74.4 11 0.00023 36.6 7.1 56 85-140 67-133 (133)
199 PF07106 TBPIP: Tat binding pr 73.4 40 0.00087 35.1 11.3 89 843-931 74-165 (169)
200 PF10186 Atg14: UV radiation r 72.9 1.5E+02 0.0033 32.5 17.6 23 794-816 25-47 (302)
201 PF10212 TTKRSYEDQ: Predicted 72.5 2.6E+02 0.0056 35.0 19.2 80 568-650 429-508 (518)
202 KOG4360 Uncharacterized coiled 72.5 1.5E+02 0.0033 36.9 16.9 106 754-880 202-307 (596)
203 PF12325 TMF_TATA_bd: TATA ele 72.3 78 0.0017 32.3 12.6 81 848-928 30-113 (120)
204 cd04042 C2A_MCTP_PRT C2 domain 72.1 12 0.00025 36.1 6.6 84 45-139 31-119 (121)
205 KOG0250 DNA repair protein RAD 72.0 3.6E+02 0.0078 36.4 57.9 153 571-748 286-438 (1074)
206 PF00769 ERM: Ezrin/radixin/mo 71.7 1.7E+02 0.0036 32.9 16.2 115 605-741 9-126 (246)
207 TIGR02680 conserved hypothetic 71.4 4.1E+02 0.0088 36.8 29.0 22 574-595 743-764 (1353)
208 TIGR01005 eps_transp_fam exopo 71.3 3E+02 0.0064 35.1 20.3 68 878-945 333-403 (754)
209 PF04111 APG6: Autophagy prote 70.8 45 0.00097 38.5 11.9 72 895-973 97-171 (314)
210 PF08647 BRE1: BRE1 E3 ubiquit 70.7 56 0.0012 31.6 10.8 71 579-649 2-72 (96)
211 cd04014 C2_PKC_epsilon C2 doma 70.4 10 0.00022 37.1 6.0 56 83-141 72-130 (132)
212 PF08647 BRE1: BRE1 E3 ubiquit 70.3 66 0.0014 31.2 11.2 95 550-648 1-95 (96)
213 PF13870 DUF4201: Domain of un 70.2 1.5E+02 0.0032 31.2 19.5 30 716-745 4-33 (177)
214 KOG4807 F-actin binding protei 70.0 2.6E+02 0.0056 34.0 26.1 120 737-866 408-537 (593)
215 TIGR02977 phageshock_pspA phag 70.0 1.7E+02 0.0038 31.9 23.4 64 709-776 83-146 (219)
216 cd04044 C2A_Tricalbin-like C2 70.0 8.6 0.00019 36.5 5.2 75 56-140 45-123 (124)
217 cd04020 C2B_SLP_1-2-3-4 C2 dom 70.0 16 0.00035 37.8 7.5 87 21-113 33-126 (162)
218 PF09738 DUF2051: Double stran 69.8 1.1E+02 0.0023 35.7 14.5 77 856-936 197-301 (302)
219 cd04022 C2A_MCTP_PRT_plant C2 69.4 11 0.00023 36.7 5.8 54 85-139 64-125 (127)
220 PF07798 DUF1640: Protein of u 69.1 89 0.0019 33.1 12.8 101 310-431 54-155 (177)
221 PF14197 Cep57_CLD_2: Centroso 69.0 40 0.00086 31.3 8.9 58 292-356 4-61 (69)
222 cd08521 C2A_SLP C2 domain firs 68.4 12 0.00027 35.6 5.9 83 21-112 20-112 (123)
223 PF14992 TMCO5: TMCO5 family 68.0 93 0.002 35.9 13.4 112 751-862 19-137 (280)
224 cd08393 C2A_SLP-1_2 C2 domain 67.2 19 0.00042 35.3 7.1 80 36-124 42-124 (125)
225 cd08685 C2_RGS-like C2 domain 67.2 7 0.00015 38.2 4.1 83 22-113 19-109 (119)
226 cd08680 C2_Kibra C2 domain fou 67.0 7.2 0.00016 38.8 4.1 70 37-113 41-113 (124)
227 TIGR03017 EpsF chain length de 66.9 2.7E+02 0.0058 32.9 20.0 53 888-944 316-368 (444)
228 COG3883 Uncharacterized protei 66.7 2.5E+02 0.0054 32.4 23.7 56 463-518 39-95 (265)
229 TIGR00634 recN DNA repair prot 66.3 3.3E+02 0.0071 33.8 26.0 109 622-746 266-374 (563)
230 KOG0804 Cytoplasmic Zn-finger 66.3 1.1E+02 0.0024 37.4 14.1 46 879-924 403-448 (493)
231 PF05010 TACC: Transforming ac 66.0 2.2E+02 0.0048 31.6 26.9 31 749-779 174-204 (207)
232 COG2433 Uncharacterized conser 65.8 48 0.001 41.7 11.3 14 883-896 495-508 (652)
233 PF11932 DUF3450: Protein of u 65.7 89 0.0019 34.6 12.5 89 855-943 28-116 (251)
234 TIGR01005 eps_transp_fam exopo 65.5 3.8E+02 0.0082 34.2 21.0 96 677-776 307-402 (754)
235 cd08401 C2A_RasA2_RasA3 C2 dom 65.2 14 0.0003 36.2 5.7 102 22-138 7-120 (121)
236 cd04024 C2A_Synaptotagmin-like 65.0 19 0.00041 34.5 6.4 98 21-127 7-110 (128)
237 TIGR02680 conserved hypothetic 64.7 5.4E+02 0.012 35.7 38.8 26 564-589 221-246 (1353)
238 cd04035 C2A_Rabphilin_Doc2 C2 63.8 20 0.00043 34.5 6.4 32 83-114 82-114 (123)
239 PLN02939 transferase, transfer 63.6 5E+02 0.011 35.0 24.7 142 706-867 252-402 (977)
240 PF10212 TTKRSYEDQ: Predicted 63.2 1.2E+02 0.0027 37.6 14.0 59 726-784 456-514 (518)
241 PF13851 GAS: Growth-arrest sp 63.1 2.3E+02 0.0051 30.9 23.5 145 769-940 28-172 (201)
242 cd04040 C2D_Tricalbin-like C2 61.6 16 0.00035 34.5 5.2 43 85-128 61-105 (115)
243 cd04051 C2_SRC2_like C2 domain 61.5 16 0.00035 35.2 5.3 73 58-134 44-124 (125)
244 KOG0992 Uncharacterized conser 61.5 4.2E+02 0.0091 33.3 29.9 171 576-780 168-338 (613)
245 KOG4687 Uncharacterized coiled 61.0 3.2E+02 0.007 31.9 24.6 105 678-845 152-257 (389)
246 TIGR03007 pepcterm_ChnLen poly 60.9 3.6E+02 0.0079 32.4 20.8 60 834-893 317-379 (498)
247 PRK10884 SH3 domain-containing 60.8 86 0.0019 34.5 11.1 25 723-747 91-115 (206)
248 PF14915 CCDC144C: CCDC144C pr 60.6 3.4E+02 0.0073 31.9 36.1 31 716-746 103-133 (305)
249 PRK11281 hypothetical protein; 60.4 6E+02 0.013 34.7 41.0 58 576-640 124-181 (1113)
250 PF06818 Fez1: Fez1; InterPro 60.3 2.8E+02 0.0061 30.9 16.0 9 878-886 169-177 (202)
251 PF00170 bZIP_1: bZIP transcri 59.8 24 0.00053 31.3 5.7 40 481-520 25-64 (64)
252 PF10498 IFT57: Intra-flagella 59.8 1.5E+02 0.0032 35.2 13.6 90 891-992 267-356 (359)
253 PF15066 CAGE1: Cancer-associa 59.4 4.4E+02 0.0095 32.8 25.8 97 719-819 405-501 (527)
254 PF15035 Rootletin: Ciliary ro 58.8 2.6E+02 0.0055 30.4 14.0 30 875-905 134-163 (182)
255 PF06005 DUF904: Protein of un 57.6 66 0.0014 30.1 8.2 48 476-523 5-52 (72)
256 cd04031 C2A_RIM1alpha C2 domai 57.6 25 0.00054 33.6 5.9 29 82-110 82-112 (125)
257 cd04036 C2_cPLA2 C2 domain pre 57.5 31 0.00068 33.1 6.5 50 86-137 65-115 (119)
258 cd04029 C2A_SLP-4_5 C2 domain 57.5 15 0.00032 36.2 4.3 93 22-124 22-124 (125)
259 PF09728 Taxilin: Myosin-like 57.1 3.7E+02 0.008 31.3 36.8 156 767-932 138-300 (309)
260 cd08375 C2_Intersectin C2 doma 56.8 31 0.00066 34.7 6.5 107 21-137 21-133 (136)
261 PRK12704 phosphodiesterase; Pr 56.7 4.8E+02 0.01 32.5 19.4 27 757-783 96-122 (520)
262 cd08681 C2_fungal_Inn1p-like C 56.6 23 0.00051 33.6 5.4 103 22-138 8-117 (118)
263 cd04026 C2_PKC_alpha_gamma C2 56.4 21 0.00045 34.7 5.2 105 21-135 19-130 (131)
264 cd08387 C2A_Synaptotagmin-8 C2 56.4 14 0.00031 35.6 4.0 45 80-125 77-123 (124)
265 PF04111 APG6: Autophagy prote 56.2 1.1E+02 0.0024 35.4 11.7 87 847-933 42-128 (314)
266 cd04019 C2C_MCTP_PRT_plant C2 56.0 31 0.00068 35.4 6.5 110 22-140 7-132 (150)
267 KOG0239 Kinesin (KAR3 subfamil 55.9 5.7E+02 0.012 33.1 20.9 29 899-928 289-317 (670)
268 cd04015 C2_plant_PLD C2 domain 55.3 28 0.0006 35.9 6.1 43 96-139 110-157 (158)
269 KOG1937 Uncharacterized conser 54.9 5.1E+02 0.011 32.2 33.0 77 567-647 287-363 (521)
270 COG4026 Uncharacterized protei 54.9 66 0.0014 36.2 9.0 86 885-1020 121-208 (290)
271 cd08400 C2_Ras_p21A1 C2 domain 54.1 68 0.0015 31.5 8.3 107 21-140 10-123 (126)
272 cd08382 C2_Smurf-like C2 domai 53.9 18 0.00038 35.3 4.2 70 45-125 31-104 (123)
273 PF06005 DUF904: Protein of un 53.6 71 0.0015 29.9 7.8 52 883-941 18-69 (72)
274 KOG3478 Prefoldin subunit 6, K 53.0 2E+02 0.0044 29.5 11.2 94 480-602 10-112 (120)
275 cd04030 C2C_KIAA1228 C2 domain 52.5 41 0.00088 32.4 6.4 95 22-124 23-126 (127)
276 PF03915 AIP3: Actin interacti 52.1 5.3E+02 0.011 31.6 17.2 159 588-764 152-313 (424)
277 PF15397 DUF4618: Domain of un 52.1 4.3E+02 0.0092 30.5 26.9 52 618-669 44-96 (258)
278 KOG1899 LAR transmembrane tyro 51.5 6.6E+02 0.014 32.5 21.1 78 658-743 129-206 (861)
279 PF12329 TMF_DNA_bd: TATA elem 51.3 92 0.002 29.1 8.2 20 879-898 8-27 (74)
280 KOG0982 Centrosomal protein Nu 51.1 5.7E+02 0.012 31.6 21.8 19 674-692 285-303 (502)
281 PF05529 Bap31: B-cell recepto 51.0 79 0.0017 33.5 8.8 34 893-926 157-190 (192)
282 PRK10361 DNA recombination pro 50.9 5.9E+02 0.013 31.7 22.3 49 1104-1155 377-425 (475)
283 PF08826 DMPK_coil: DMPK coile 50.4 98 0.0021 28.4 7.9 51 818-868 9-59 (61)
284 cd08392 C2A_SLP-3 C2 domain fi 50.3 18 0.00038 36.0 3.7 55 53-112 56-113 (128)
285 TIGR03017 EpsF chain length de 50.3 4.9E+02 0.011 30.7 20.6 19 884-902 343-361 (444)
286 cd04048 C2A_Copine C2 domain f 50.2 34 0.00074 32.9 5.5 98 17-124 2-112 (120)
287 KOG2129 Uncharacterized conser 50.2 5.8E+02 0.013 31.5 19.6 263 254-539 4-329 (552)
288 PF11932 DUF3450: Protein of u 49.9 4E+02 0.0087 29.6 15.5 21 790-810 43-63 (251)
289 KOG0244 Kinesin-like protein [ 49.9 7.9E+02 0.017 33.0 22.2 66 740-805 499-564 (913)
290 KOG3647 Predicted coiled-coil 49.2 4.7E+02 0.01 30.6 14.5 92 780-877 103-194 (338)
291 PF10146 zf-C4H2: Zinc finger- 49.2 3.4E+02 0.0074 30.5 13.5 14 890-903 88-101 (230)
292 smart00502 BBC B-Box C-termina 49.0 2.4E+02 0.0052 26.7 11.9 53 750-802 3-56 (127)
293 PF03999 MAP65_ASE1: Microtubu 47.9 45 0.00098 41.6 7.4 55 788-846 322-376 (619)
294 PRK10884 SH3 domain-containing 47.9 1.2E+02 0.0025 33.5 9.6 19 794-812 137-155 (206)
295 PRK08476 F0F1 ATP synthase sub 47.7 3.3E+02 0.0072 28.0 13.9 41 643-683 34-74 (141)
296 PF01442 Apolipoprotein: Apoli 47.5 3.1E+02 0.0067 27.6 22.7 8 580-587 12-19 (202)
297 smart00338 BRLZ basic region l 46.6 53 0.0011 29.2 5.7 40 481-520 25-64 (65)
298 KOG1853 LIS1-interacting prote 46.3 5.3E+02 0.012 29.9 19.6 29 773-801 96-124 (333)
299 PF00769 ERM: Ezrin/radixin/mo 46.2 4.8E+02 0.01 29.4 15.1 30 906-935 98-127 (246)
300 PF07106 TBPIP: Tat binding pr 45.7 1.1E+02 0.0024 31.9 8.7 63 292-359 78-140 (169)
301 PF15294 Leu_zip: Leucine zipp 45.5 5.5E+02 0.012 29.9 15.5 139 791-942 127-277 (278)
302 COG4717 Uncharacterized conser 45.4 9.1E+02 0.02 32.4 31.7 66 294-359 182-250 (984)
303 PF12761 End3: Actin cytoskele 44.4 79 0.0017 34.8 7.6 62 855-916 128-193 (195)
304 PF03148 Tektin: Tektin family 44.0 6.3E+02 0.014 30.1 37.8 282 638-935 55-369 (384)
305 cd08675 C2B_RasGAP C2 domain s 43.6 41 0.0009 33.7 5.1 68 59-127 45-121 (137)
306 PF09744 Jnk-SapK_ap_N: JNK_SA 43.3 4.4E+02 0.0096 28.2 13.0 68 792-865 39-106 (158)
307 cd04038 C2_ArfGAP C2 domain pr 43.3 40 0.00086 34.6 5.0 98 22-134 9-108 (145)
308 cd08386 C2A_Synaptotagmin-7 C2 43.2 36 0.00077 32.7 4.4 41 83-124 81-123 (125)
309 PF10267 Tmemb_cc2: Predicted 43.1 5.1E+02 0.011 31.5 14.5 52 292-349 211-262 (395)
310 PF04645 DUF603: Protein of un 42.4 61 0.0013 35.1 6.2 52 302-355 107-158 (181)
311 KOG4677 Golgi integral membran 42.4 7.8E+02 0.017 30.7 22.4 248 550-808 195-464 (554)
312 PF07464 ApoLp-III: Apolipopho 42.2 1.3E+02 0.0029 31.9 8.7 94 557-656 50-148 (155)
313 cd04037 C2E_Ferlin C2 domain f 42.1 36 0.00079 33.3 4.4 106 21-135 6-114 (124)
314 smart00239 C2 Protein kinase C 42.0 78 0.0017 27.5 6.0 86 21-115 6-96 (101)
315 cd08678 C2_C21orf25-like C2 do 41.7 75 0.0016 31.0 6.4 57 85-142 59-122 (126)
316 PRK11546 zraP zinc resistance 41.6 1.1E+02 0.0024 32.3 7.8 61 739-810 50-110 (143)
317 PRK15422 septal ring assembly 41.6 1.3E+02 0.0028 29.1 7.5 57 884-940 19-75 (79)
318 PF07058 Myosin_HC-like: Myosi 41.5 3.4E+02 0.0073 32.2 12.2 135 792-945 3-163 (351)
319 PF07926 TPR_MLP1_2: TPR/MLP1/ 41.4 4E+02 0.0086 27.1 18.3 28 719-746 67-94 (132)
320 PRK15422 septal ring assembly 41.4 1.4E+02 0.0031 28.8 7.8 55 478-534 7-68 (79)
321 PRK00409 recombination and DNA 41.4 5.2E+02 0.011 33.8 15.2 22 853-874 575-596 (782)
322 KOG4807 F-actin binding protei 40.8 7.7E+02 0.017 30.3 26.3 126 676-804 414-562 (593)
323 cd04025 C2B_RasA1_RasA4 C2 dom 40.6 65 0.0014 31.0 5.8 92 21-125 6-102 (123)
324 PF15290 Syntaphilin: Golgi-lo 40.2 2.5E+02 0.0055 32.8 10.9 74 552-648 68-143 (305)
325 PF08581 Tup_N: Tup N-terminal 39.3 2.4E+02 0.0052 27.1 9.0 66 691-763 9-77 (79)
326 PF09731 Mitofilin: Mitochondr 38.9 8.5E+02 0.018 30.2 24.9 47 612-658 277-325 (582)
327 cd04047 C2B_Copine C2 domain s 38.8 76 0.0017 29.9 5.8 89 18-112 3-99 (110)
328 COG2433 Uncharacterized conser 38.7 2.7E+02 0.0058 35.5 11.6 30 788-817 414-443 (652)
329 PF06785 UPF0242: Uncharacteri 38.5 7.8E+02 0.017 29.7 17.7 58 836-896 157-214 (401)
330 cd04041 C2A_fungal C2 domain f 38.4 1.2E+02 0.0026 29.0 7.2 86 21-113 7-99 (111)
331 TIGR02449 conserved hypothetic 37.6 1.2E+02 0.0026 28.2 6.5 51 477-527 2-52 (65)
332 cd08690 C2_Freud-1 C2 domain f 37.5 1E+02 0.0022 32.5 6.9 62 81-143 74-140 (155)
333 COG1842 PspA Phage shock prote 37.4 6.4E+02 0.014 28.3 16.1 25 749-773 12-36 (225)
334 PF09602 PhaP_Bmeg: Polyhydrox 37.3 5.8E+02 0.013 27.8 18.2 132 568-707 17-164 (165)
335 PF13514 AAA_27: AAA domain 37.1 1.2E+03 0.026 31.5 69.5 52 294-345 151-205 (1111)
336 TIGR01069 mutS2 MutS2 family p 37.0 5.3E+02 0.011 33.7 14.4 20 854-873 571-590 (771)
337 PF06657 Cep57_MT_bd: Centroso 36.1 1.6E+02 0.0034 28.0 7.3 58 729-786 14-79 (79)
338 PF07798 DUF1640: Protein of u 35.4 5.7E+02 0.012 27.2 16.1 20 709-728 49-68 (177)
339 PF06810 Phage_GP20: Phage min 35.2 3.7E+02 0.008 28.4 10.6 60 622-689 44-103 (155)
340 PRK11820 hypothetical protein; 35.1 7.8E+02 0.017 28.6 15.1 18 838-855 242-259 (288)
341 PF15290 Syntaphilin: Golgi-lo 34.9 3.4E+02 0.0073 31.8 10.8 35 709-743 80-119 (305)
342 KOG4196 bZIP transcription fac 34.5 2.4E+02 0.0052 29.6 8.7 66 286-358 40-118 (135)
343 PLN02939 transferase, transfer 34.5 1.4E+03 0.029 31.2 29.7 116 629-745 128-253 (977)
344 cd08390 C2A_Synaptotagmin-15-1 34.1 71 0.0015 30.5 4.9 43 82-125 78-122 (123)
345 cd04054 C2A_Rasal1_RasA4 C2 do 33.9 87 0.0019 30.5 5.5 52 85-137 61-119 (121)
346 KOG2391 Vacuolar sorting prote 33.8 6.8E+02 0.015 30.2 13.2 61 286-353 218-278 (365)
347 PF09304 Cortex-I_coil: Cortex 33.7 5.4E+02 0.012 26.3 12.5 39 828-866 17-55 (107)
348 PF02403 Seryl_tRNA_N: Seryl-t 33.7 3.8E+02 0.0083 25.8 9.8 31 912-942 68-98 (108)
349 PF00804 Syntaxin: Syntaxin; 33.5 3.8E+02 0.0082 24.6 11.2 91 717-809 6-96 (103)
350 PF10168 Nup88: Nuclear pore c 33.1 1.2E+03 0.027 30.3 21.9 24 719-742 640-663 (717)
351 KOG0982 Centrosomal protein Nu 33.0 1.1E+03 0.023 29.5 23.4 127 690-819 282-426 (502)
352 TIGR03319 YmdA_YtgF conserved 32.8 1.1E+03 0.023 29.6 17.6 28 756-783 89-116 (514)
353 cd08691 C2_NEDL1-like C2 domai 32.6 2E+02 0.0043 29.4 7.9 99 16-126 1-121 (137)
354 TIGR01069 mutS2 MutS2 family p 32.5 6.7E+02 0.015 32.8 14.3 53 294-349 223-275 (771)
355 PF12252 SidE: Dot/Icm substra 32.5 1.5E+03 0.033 31.2 17.7 202 704-944 1003-1212(1439)
356 COG5283 Phage-related tail pro 32.3 1.6E+03 0.034 31.3 27.7 106 601-706 134-253 (1213)
357 COG4372 Uncharacterized protei 32.3 1E+03 0.023 29.2 27.3 164 706-874 63-236 (499)
358 KOG1962 B-cell receptor-associ 32.2 1E+02 0.0022 34.4 6.2 93 297-403 118-210 (216)
359 cd08381 C2B_PI3K_class_II C2 d 32.1 68 0.0015 31.5 4.5 50 64-113 60-111 (122)
360 KOG3647 Predicted coiled-coil 31.9 3E+02 0.0064 32.1 9.7 75 568-642 128-202 (338)
361 KOG1003 Actin filament-coating 31.8 7.8E+02 0.017 27.6 25.3 52 604-655 21-72 (205)
362 PF04949 Transcrip_act: Transc 31.6 6.9E+02 0.015 27.0 14.7 89 769-867 57-145 (159)
363 PF08232 Striatin: Striatin fa 31.5 80 0.0017 32.5 5.0 38 972-1020 26-63 (134)
364 PF04582 Reo_sigmaC: Reovirus 31.2 75 0.0016 37.4 5.2 89 831-919 60-148 (326)
365 KOG2391 Vacuolar sorting prote 31.2 3.5E+02 0.0076 32.4 10.4 76 610-702 230-305 (365)
366 PF07989 Microtub_assoc: Micro 30.9 3.8E+02 0.0082 25.4 8.8 12 575-586 2-13 (75)
367 cd04049 C2_putative_Elicitor-r 30.1 1.1E+02 0.0023 29.6 5.4 102 21-128 7-110 (124)
368 KOG4348 Adaptor protein CMS/SE 30.0 7.6E+02 0.017 30.7 13.0 49 293-341 569-621 (627)
369 PF03999 MAP65_ASE1: Microtubu 29.9 1E+02 0.0023 38.5 6.6 106 882-1014 322-428 (619)
370 PF03962 Mnd1: Mnd1 family; I 29.9 6.7E+02 0.014 27.3 11.7 30 780-809 126-155 (188)
371 cd04009 C2B_Munc13-like C2 dom 29.6 1.9E+02 0.004 28.7 7.1 35 84-118 87-123 (133)
372 TIGR00255 conserved hypothetic 29.5 9.5E+02 0.021 28.0 14.6 18 838-855 245-262 (291)
373 PF08172 CASP_C: CASP C termin 29.5 3.8E+02 0.0082 30.5 10.2 95 714-819 9-130 (248)
374 KOG4603 TBP-1 interacting prot 29.2 4.3E+02 0.0094 29.1 9.9 75 571-645 114-197 (201)
375 KOG2010 Double stranded RNA bi 29.1 2.4E+02 0.0052 33.6 8.6 67 296-362 136-202 (405)
376 PF05769 DUF837: Protein of un 29.0 7.8E+02 0.017 26.8 20.1 38 719-756 71-108 (181)
377 PF12709 Kinetocho_Slk19: Cent 28.9 5.8E+02 0.013 25.2 11.1 37 634-670 2-38 (87)
378 smart00502 BBC B-Box C-termina 28.7 5.1E+02 0.011 24.5 13.8 104 822-944 2-105 (127)
379 PF04508 Pox_A_type_inc: Viral 28.5 68 0.0015 24.5 2.8 21 476-496 2-22 (23)
380 KOG0288 WD40 repeat protein Ti 28.5 1.2E+03 0.026 28.9 17.4 19 610-628 15-33 (459)
381 TIGR01000 bacteriocin_acc bact 28.4 1.1E+03 0.024 28.4 23.6 34 924-958 297-330 (457)
382 PRK00409 recombination and DNA 28.0 1E+03 0.022 31.3 14.8 50 294-346 228-277 (782)
383 PHA01750 hypothetical protein 28.0 1.7E+02 0.0037 27.6 5.9 37 887-930 39-75 (75)
384 PF04065 Not3: Not1 N-terminal 27.8 9.4E+02 0.02 27.3 15.7 58 689-748 4-61 (233)
385 KOG1962 B-cell receptor-associ 27.8 4.1E+02 0.0088 30.0 9.8 26 794-819 184-209 (216)
386 PF05791 Bacillus_HBL: Bacillu 27.7 5.3E+02 0.012 27.7 10.5 70 850-929 112-181 (184)
387 PF11559 ADIP: Afadin- and alp 27.6 6.8E+02 0.015 25.6 16.1 28 719-746 95-122 (151)
388 PF09744 Jnk-SapK_ap_N: JNK_SA 27.5 7.9E+02 0.017 26.3 13.5 88 719-817 51-138 (158)
389 COG1842 PspA Phage shock prote 27.4 9.3E+02 0.02 27.1 22.8 61 709-773 83-143 (225)
390 PF05377 FlaC_arch: Flagella a 27.3 1.8E+02 0.0039 26.5 5.7 39 575-613 2-40 (55)
391 PF05911 DUF869: Plant protein 27.3 1.6E+03 0.034 29.8 52.4 102 311-427 21-126 (769)
392 PF14932 HAUS-augmin3: HAUS au 27.2 9.4E+02 0.02 27.1 13.7 80 573-652 68-151 (256)
393 PF05278 PEARLI-4: Arabidopsis 27.2 1E+03 0.023 27.7 15.2 71 793-866 190-260 (269)
394 KOG0972 Huntingtin interacting 26.9 1.1E+03 0.024 28.1 13.1 76 721-796 230-305 (384)
395 cd04021 C2_E3_ubiquitin_ligase 26.8 1.2E+02 0.0027 29.7 5.2 44 85-128 61-110 (125)
396 PF10205 KLRAQ: Predicted coil 26.7 2.2E+02 0.0047 28.8 6.8 51 887-937 2-52 (102)
397 COG0497 RecN ATPase involved i 26.7 1.4E+03 0.031 29.1 24.2 198 654-879 171-373 (557)
398 cd04045 C2C_Tricalbin-like C2 26.5 1.1E+02 0.0025 29.9 4.9 47 85-132 62-110 (120)
399 PF02403 Seryl_tRNA_N: Seryl-t 26.4 3.1E+02 0.0067 26.5 7.8 58 685-743 42-99 (108)
400 KOG1003 Actin filament-coating 26.3 9.7E+02 0.021 27.0 22.3 65 716-784 2-69 (205)
401 PF09304 Cortex-I_coil: Cortex 26.2 7.2E+02 0.016 25.5 13.6 25 745-769 11-35 (107)
402 PF05082 Rop-like: Rop-like; 26.2 2.5E+02 0.0055 26.3 6.7 62 293-354 2-63 (66)
403 PRK10869 recombination and rep 26.1 1.4E+03 0.03 28.7 26.8 73 622-702 261-333 (553)
404 PF05335 DUF745: Protein of un 26.1 9.1E+02 0.02 26.6 13.9 102 829-930 69-170 (188)
405 PF14916 CCDC92: Coiled-coil d 26.1 80 0.0017 29.0 3.4 37 491-527 5-45 (60)
406 cd08408 C2B_Synaptotagmin-14_1 25.9 1.1E+02 0.0024 30.9 4.8 81 23-109 23-110 (138)
407 KOG3156 Uncharacterized membra 25.8 5.7E+02 0.012 28.9 10.3 109 281-403 73-191 (220)
408 PRK06568 F0F1 ATP synthase sub 25.7 8.4E+02 0.018 26.0 15.1 46 659-707 91-136 (154)
409 KOG4809 Rab6 GTPase-interactin 25.7 1.5E+03 0.033 29.0 30.9 59 585-657 234-292 (654)
410 PRK10869 recombination and rep 25.6 1.4E+03 0.031 28.6 26.4 29 848-876 341-369 (553)
411 PF15175 SPATA24: Spermatogene 25.5 8.7E+02 0.019 26.2 11.2 75 836-910 2-83 (153)
412 cd08405 C2B_Synaptotagmin-7 C2 25.5 2E+02 0.0043 28.4 6.4 30 82-111 80-111 (136)
413 PF02841 GBP_C: Guanylate-bind 25.2 1.1E+03 0.023 27.1 27.1 144 652-808 150-296 (297)
414 PF07139 DUF1387: Protein of u 25.1 1.2E+03 0.026 27.6 13.5 109 595-737 147-268 (302)
415 PF12795 MscS_porin: Mechanose 25.0 9.6E+02 0.021 26.5 21.5 37 878-914 145-181 (240)
416 PRK00106 hypothetical protein; 24.8 1.5E+03 0.033 28.7 22.9 24 1116-1140 450-473 (535)
417 PF12777 MT: Microtubule-bindi 24.7 1.2E+03 0.025 27.4 22.8 49 568-616 3-51 (344)
418 PRK03598 putative efflux pump 24.6 1.1E+03 0.023 26.9 14.0 111 850-970 109-229 (331)
419 PF07851 TMPIT: TMPIT-like pro 24.0 5.1E+02 0.011 30.9 10.2 94 849-948 5-98 (330)
420 cd08404 C2B_Synaptotagmin-4 C2 23.9 1.4E+02 0.003 29.5 5.0 84 21-110 21-110 (136)
421 PF12329 TMF_DNA_bd: TATA elem 23.4 6.3E+02 0.014 23.7 9.1 56 855-918 12-68 (74)
422 TIGR01010 BexC_CtrB_KpsE polys 23.3 1.2E+03 0.026 27.0 14.4 17 574-590 215-231 (362)
423 PRK03947 prefoldin subunit alp 23.3 3.9E+02 0.0084 27.0 8.1 106 788-893 5-139 (140)
424 PF01166 TSC22: TSC-22/dip/bun 23.1 1.3E+02 0.0029 27.6 4.2 28 475-502 14-41 (59)
425 COG3074 Uncharacterized protei 22.9 4.1E+02 0.009 25.5 7.4 52 884-935 19-70 (79)
426 TIGR01000 bacteriocin_acc bact 22.8 1.4E+03 0.03 27.6 22.2 25 911-935 291-315 (457)
427 PF12761 End3: Actin cytoskele 22.7 3.7E+02 0.0081 29.8 8.3 95 687-784 97-194 (195)
428 PRK13729 conjugal transfer pil 22.7 2.1E+02 0.0046 35.3 7.1 45 849-900 77-121 (475)
429 PF03962 Mnd1: Mnd1 family; I 22.5 1E+03 0.022 25.9 12.2 52 766-817 105-156 (188)
430 PF12711 Kinesin-relat_1: Kine 22.5 2.9E+02 0.0063 27.1 6.6 42 785-826 20-67 (86)
431 cd00275 C2_PLC_like C2 domain 22.4 6.4E+02 0.014 24.0 9.1 49 86-139 73-127 (128)
432 PF01920 Prefoldin_2: Prefoldi 22.4 6.5E+02 0.014 23.6 9.4 84 591-678 2-100 (106)
433 PRK06569 F0F1 ATP synthase sub 22.2 1E+03 0.022 25.7 13.6 52 701-752 34-89 (155)
434 PF02994 Transposase_22: L1 tr 22.1 1.5E+02 0.0033 35.0 5.7 58 896-953 143-201 (370)
435 PF14282 FlxA: FlxA-like prote 22.1 4.1E+02 0.0088 26.3 7.7 48 855-902 19-70 (106)
436 PF05529 Bap31: B-cell recepto 22.1 3.7E+02 0.0079 28.6 8.0 32 789-820 154-185 (192)
437 PRK13729 conjugal transfer pil 22.0 3.1E+02 0.0067 34.0 8.2 47 571-617 74-120 (475)
438 PF06632 XRCC4: DNA double-str 21.9 7.8E+02 0.017 29.4 11.2 27 877-903 188-214 (342)
439 PF10211 Ax_dynein_light: Axon 21.9 1E+03 0.023 25.8 13.6 15 792-806 173-187 (189)
440 PF03954 Lectin_N: Hepatic lec 21.7 4.3E+02 0.0094 28.0 8.1 88 574-703 49-136 (138)
441 cd08409 C2B_Synaptotagmin-15 C 21.7 1.5E+02 0.0033 29.7 4.8 84 22-112 22-111 (137)
442 KOG1103 Predicted coiled-coil 21.6 1.5E+03 0.033 27.5 22.3 41 751-791 147-187 (561)
443 cd08385 C2A_Synaptotagmin-1-5- 21.3 1.6E+02 0.0034 28.4 4.7 83 22-113 23-112 (124)
444 PF04949 Transcrip_act: Transc 21.2 5.5E+02 0.012 27.7 8.7 106 408-526 28-135 (159)
445 PF04977 DivIC: Septum formati 21.2 2.8E+02 0.0061 24.8 6.0 53 322-393 18-70 (80)
446 PF05276 SH3BP5: SH3 domain-bi 21.1 1.3E+03 0.027 26.4 24.2 190 549-783 6-224 (239)
447 cd00030 C2 C2 domain. The C2 d 21.1 2E+02 0.0043 24.6 4.9 28 85-112 61-90 (102)
448 PRK10361 DNA recombination pro 21.0 1.7E+03 0.037 27.9 23.1 33 695-727 167-199 (475)
449 PF10234 Cluap1: Clusterin-ass 20.9 1.3E+03 0.029 26.7 13.4 75 596-671 185-260 (267)
450 PF10205 KLRAQ: Predicted coil 20.8 8.9E+02 0.019 24.6 10.1 22 716-737 3-24 (102)
451 PF12953 DUF3842: Domain of un 20.8 51 0.0011 34.3 1.3 34 96-129 76-109 (131)
452 PRK10929 putative mechanosensi 20.8 2.3E+03 0.051 29.5 36.1 337 482-845 58-429 (1109)
453 PF13166 AAA_13: AAA domain 20.8 1.7E+03 0.038 28.0 23.6 8 625-632 256-263 (712)
454 PF05266 DUF724: Protein of un 20.8 1.1E+03 0.025 25.8 14.9 66 871-943 119-184 (190)
455 PF02050 FliJ: Flagellar FliJ 20.7 6.8E+02 0.015 23.2 11.2 89 851-939 1-94 (123)
456 cd08406 C2B_Synaptotagmin-12 C 20.5 1.7E+02 0.0038 29.6 5.0 80 22-109 22-109 (136)
457 PRK06231 F0F1 ATP synthase sub 20.3 1.2E+03 0.025 25.7 13.1 95 702-798 73-175 (205)
458 PF04912 Dynamitin: Dynamitin 20.3 1.5E+03 0.032 27.0 23.8 27 475-501 87-113 (388)
459 PRK10780 periplasmic chaperone 20.3 1E+03 0.022 25.0 13.2 61 594-656 50-110 (165)
460 TIGR03319 YmdA_YtgF conserved 20.3 1.7E+03 0.038 27.8 20.0 36 749-784 75-110 (514)
461 TIGR03545 conserved hypothetic 20.2 1.4E+03 0.03 29.1 13.4 100 571-670 162-267 (555)
No 1
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=99.83 E-value=1.8e-20 Score=181.52 Aligned_cols=135 Identities=24% Similarity=0.320 Sum_probs=124.9
Q ss_pred cccceEEEEEeeeeeccccccccceEEEEeecCCCCccccccccccccCccccCccchhhhhccccCCccccccceeEEE
Q 001085 11 KNKIKAVFKLQFHATQVAQLGENALMISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFI 90 (1160)
Q Consensus 11 K~kiKvvFKLqFhATQVPq~gwDkLfVSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfV 90 (1160)
|++.|+.|.|.+|..+.....|..++|++--++.+++.+.|..+.|.+|.|.|++++..+++|..|.++++|++|+|+|+
T Consensus 2 ~~~~kf~~~l~i~~l~~~p~~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 2 KKAVKFQFDLTIHELENLPSSNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred CceeeEEEEEEEEEeECcCCCCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 56889999999998885444899999999999999999999999999999999999999999999999999999999999
Q ss_pred EecC--CCcccccceeecchhhhhhhc-CcceeeccccCC-CCCceeeEeeeeeccccc
Q 001085 91 VSTG--LSKAGFVGEASIDFADYAEAS-KTSTVSLPLKYS-RSKAVLHVSIQRVQENVD 145 (1160)
Q Consensus 91 VSmG--SSKSgiLGEasINlAdYaea~-kp~tVSLPLK~c-nsGtVLHVtIQ~Lt~k~~ 145 (1160)
|.++ +.+..+||.++||||+||+.. +|.++.+||+.| ..+|+|||+|++..-++.
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~~~ 140 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELRED 140 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECccC
Confidence 9976 666689999999999999996 999999999999 999999999999876554
No 2
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.63 E-value=1.8e-08 Score=131.26 Aligned_cols=563 Identities=24% Similarity=0.299 Sum_probs=292.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHhHHHHhHHHHHHHHHHhhhhhhhHHHHhcccc
Q 001085 292 DIEIEKLKSELVALARQADLSELELQTLRKQIVKESKRAQDLSREVISLKEEKDLLKLDCEKLKTFQKRMDEAKVRNKLH 371 (1160)
Q Consensus 292 e~~iEkLKsE~~sL~Rqad~s~lELQtLRKQi~kEsKrgqdLs~EVs~Lk~ERD~LK~E~EqLKs~~k~~~ea~~~~rl~ 371 (1160)
+..+.+...|+.-+.....+.+.....|++...+..-...+|..+ |..|++.+..=++.+........+
T Consensus 837 ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~---l~~e~~~~~~aee~~~~~~~~k~~-------- 905 (1930)
T KOG0161|consen 837 EEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQ---LQAEKENLAEAEELLERLRAEKQE-------- 905 (1930)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 346777788888888888888877777777777777777778776 777777777766666555443211
Q ss_pred ccCCCchHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhhHHHHHHhhhHHHHHHHHhhhhcccccccCcccchHHhhhhhc
Q 001085 372 FQGGDPWVLLEEIRQELSYEKDLNANLRLQLQKTQESNAELILAVQDLDEMLEQKNREISNHSNKSGSYVNAKELRRNIS 451 (1160)
Q Consensus 372 ~e~~D~~~~leELk~EL~~EKelNaNL~LQLqKTQESN~ELvlaVqDLEEmLEQk~~EIs~Ls~~~~~~~n~~e~~~~l~ 451 (1160)
.-..+.++...+..+.+-|+.|..+..+.+....+|--.+.|+|-++.+-.+|-....+.+.. +.+-+.
T Consensus 906 -----le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~------l~~e~~ 974 (1930)
T KOG0161|consen 906 -----LEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKN------LEEEIN 974 (1930)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Confidence 125678889999999999999999999999888899899999999998877777665554332 222222
Q ss_pred CCCCCchH---hHHHHHHHHhhccC------------hhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Q 001085 452 KSQTDDDE---DQKALEELVKEHRD------------VKETYLLEQKIMDLYSEIEIYRRDKDELETQMEQLALDYEILK 516 (1160)
Q Consensus 452 ~~etddde---~q~~l~~l~ke~~d------------~kE~~~L~~KI~eL~~ele~y~~~~~eLe~k~eqL~~dye~Lk 516 (1160)
.++....- ..+.+++..++..+ .+-...|.+-|++|...++.=++.+.+++.....|.-+...++
T Consensus 975 ~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~ 1054 (1930)
T KOG0161|consen 975 SLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQ 1054 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22221111 11123333332211 1122334444444444444333334444444434433332222
Q ss_pred hhhcchhhhHhHHHHHHHHhhhhcccCCCCCCCCchhhhhhHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001085 517 QENHDISYKLEQSQLQEQLKMQYECSSIGNGSEPETQVESLENELKIKSKDLSDSLAIINELETHIEGLASELKKQSREF 596 (1160)
Q Consensus 517 QEN~dis~KLEqsqlqe~l~~~~ecSs~~~~~~le~~iesle~elk~~~~e~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f 596 (1160)
....+ ++....+++++++ ..+.++-.+..+++........-.-.|++|+++|..|+++++..+.-.
T Consensus 1055 e~~~~--~~~~~~el~~~l~------------kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r 1120 (1930)
T KOG0161|consen 1055 ESIEE--LKKQKEELDNQLK------------KKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASR 1120 (1930)
T ss_pred hHHHH--HHHHHHHHHHHHH------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111 3333444444442 122344445555555555555566678888888888888888877666
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHH
Q 001085 597 SNFQATIKELESQIEALGNELKEQSKGYSDSLATIK-ELEAYIKNLEEELEKQAQVYEADLEVVTRAKVEQEQRAIQAEE 675 (1160)
Q Consensus 597 ~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~-~Le~qv~sl~eel~~Qaq~f~~dl~a~~~~k~eqE~rai~aEe 675 (1160)
.+.......|..++..+..+|..+- +=..+...++ ..+..+..|...|+.....++.-+.+|-.-+-..=....-.=+
T Consensus 1121 ~K~ek~r~dL~~ele~l~~~Lee~~-~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle 1199 (1930)
T KOG0161|consen 1121 AKAERQRRDLSEELEELKEELEEQG-GTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLE 1199 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655555556666655555555551 0011111111 2455566666555555555554444433221111111100001
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhh---hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 001085 676 TLRKTRLKNANTAERLQEEFRRLSVQMASSFD---ANEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKL 752 (1160)
Q Consensus 676 aLrktR~~na~~~e~LqeE~~~LS~qmsSt~e---enE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki 752 (1160)
-|.+..-+=...=..||.|+..|..+|...-. ..|+.....-+.+++|+.--..+...+.+-..+..-++. .+
T Consensus 1200 ~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~----E~ 1275 (1930)
T KOG0161|consen 1200 QLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQN----EN 1275 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hH
Confidence 11111111112223678888888777754433 345555444555566655555555544443333333333 45
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHh
Q 001085 753 CQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQM 832 (1160)
Q Consensus 753 ~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~ 832 (1160)
.+|..++.-....+..++.......-|++.+++.-++.. .+...|-..+..+..+.+.|-++++....-+.+|.
T Consensus 1276 ~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~----r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~-- 1349 (1930)
T KOG0161|consen 1276 EELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEET----REKSALENALRQLEHELDLLREQLEEEQEAKNELE-- 1349 (1930)
T ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 566666666666666666666666666666666555444 22222333333334444455555544444333322
Q ss_pred hhhhHHHHHHHHHhhhhhhhH--------HHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHH
Q 001085 833 KTTVKEYELLIQRANRERDEL--------ESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNL 902 (1160)
Q Consensus 833 k~~~~~~~~~~~~~~~e~~~l--------~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~l 902 (1160)
..+....+.++.+.....+. +...-.+....+...+.+..+....+.-|.+...|+.|++.+..-+...
T Consensus 1350 -r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~ 1426 (1930)
T KOG0161|consen 1350 -RKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERS 1426 (1930)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 22333333333333332222 2222222222333333333444445555555566666655554444333
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.61 E-value=4.6e-08 Score=127.60 Aligned_cols=232 Identities=21% Similarity=0.303 Sum_probs=136.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Q 001085 681 RLKNANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLN 760 (1160)
Q Consensus 681 R~~na~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~ 760 (1160)
+..-+.+.-+++.|+..|-.++..-++....+..++-.-..++-..++++++.+....+++.-.+.....+++++..++.
T Consensus 1317 k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e 1396 (1930)
T KOG0161|consen 1317 KSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIE 1396 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444455577777888888887777777777776666666666667777777776666666666655556666655555
Q ss_pred hhhH-------HHHHHHHHHHHHhHHHHHhh---hhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHH
Q 001085 761 VKTD-------QIEQMLKEINNLSNQLEEQK---KHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELA 830 (1160)
Q Consensus 761 ~~~~-------~~e~m~~el~~~s~ql~~~~---~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~ 830 (1160)
...- ..-++.+++++..-.++.+. ..-+..+..|..-+...+ ...+.+-.++.
T Consensus 1397 ~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k-----------------~~~e~l~~Eld 1459 (1930)
T KOG0161|consen 1397 AANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWK-----------------KKLEKLQAELD 1459 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHH
Confidence 4322 23333444555544443331 111111222222222222 22344445555
Q ss_pred HhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhh
Q 001085 831 QMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDE 910 (1160)
Q Consensus 831 ~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e 910 (1160)
.........++-+++......++...+.-+..+-.+...++..+...+++-+..+-.|+.....+-.++.+|++.|-+-+
T Consensus 1460 ~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE 1539 (1930)
T KOG0161|consen 1460 AAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELE 1539 (1930)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777777777777777777777778888888888888888887777776666666555555555555554443
Q ss_pred -------HHHHHHHHHHHHhhhhhhh
Q 001085 911 -------SEKEKLRKQAFQLKGDLKK 929 (1160)
Q Consensus 911 -------~eke~l~kqv~~lk~~l~k 929 (1160)
..+=.+.=.+.+++.++.+
T Consensus 1540 ~~le~eE~~~lr~~~~~~~~r~e~er 1565 (1930)
T KOG0161|consen 1540 AALEAEEDKKLRLQLELQQLRSEIER 1565 (1930)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3333333344555555433
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.52 E-value=5.2e-07 Score=112.55 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhcccccccccchhhhhHhhhhhhhhc
Q 001085 1103 NDMLIELDSLKEKNQCMESELKDMQERYSEISLKFAEVEGERQKLVMTLRNLKNAK 1158 (1160)
Q Consensus 1103 ~~~~~~~~~lk~~~~~~e~el~em~~ryse~sl~faevegerq~lvm~~rnl~~~~ 1158 (1160)
+.+-.++..+..-|...-.++.+..+||..+.=+++.++..+..|..++..|+..+
T Consensus 961 ~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~ 1016 (1164)
T TIGR02169 961 QRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKK 1016 (1164)
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555557777799999999999999999999999999999998887543
No 5
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.50 E-value=1.6e-06 Score=112.45 Aligned_cols=564 Identities=23% Similarity=0.275 Sum_probs=264.4
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhHHHHHHHhHHHHhHHHHHHHHHHhhhhhhhHHHHhccccccCCCchHHHHHHHHHhhh
Q 001085 311 LSELELQTLRKQIVKESKRAQDLSREVISLKEEKDLLKLDCEKLKTFQKRMDEAKVRNKLHFQGGDPWVLLEEIRQELSY 390 (1160)
Q Consensus 311 ~s~lELQtLRKQi~kEsKrgqdLs~EVs~Lk~ERD~LK~E~EqLKs~~k~~~ea~~~~rl~~e~~D~~~~leELk~EL~~ 390 (1160)
..+.++++|++++-.-++.-.-|...++.|-.+--.|..||+.++.-.+.+.... .+....|...++.+- .+.|
T Consensus 458 ~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~s~----~~~~es~S~~iIse~--Lv~F 531 (1822)
T KOG4674|consen 458 KLEKELESLKKQLNDLERENKLLEQQISDLSRQVNVLLLELDELRKGSKITVSSD----STENESDSEEIISER--LVEF 531 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcc----ccccCccHHHHHHHH--HHHh
Confidence 3344556666666555555555555555555555555556666666555332211 122333555555542 3333
Q ss_pred hhhhhhhHHHHHHHhhhhhHHHHHHhhhHHHHHHHHhhhh-cccccccCcccchHHhhhhhcCCCCCchHhHHHHHHHHh
Q 001085 391 EKDLNANLRLQLQKTQESNAELILAVQDLDEMLEQKNREI-SNHSNKSGSYVNAKELRRNISKSQTDDDEDQKALEELVK 469 (1160)
Q Consensus 391 EKelNaNL~LQLqKTQESN~ELvlaVqDLEEmLEQk~~EI-s~Ls~~~~~~~n~~e~~~~l~~~etddde~q~~l~~l~k 469 (1160)
+ |+. .+|+.|.+|+.+|+.|.+.+|-.-+.. ..+.+...... ++...++..+.
T Consensus 532 -~----nI~----eLqekN~eLL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~----------------~~a~e~i~~L~- 585 (1822)
T KOG4674|consen 532 -S----NIN----ELQEKNVELLNAVRELAEKLEAAEKTQDKTLQNILKETI----------------NEASEKIAELE- 585 (1822)
T ss_pred -c----cHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH----------------HHHHHHHHHHH-
Confidence 3 666 899999999999999999999554432 11111110000 11222222222
Q ss_pred hccChhhHHHHHHHHHHHHHHHHHhhhhhHHHH----------------------HHHHHHHHHHHHHhhhhcchhhhHh
Q 001085 470 EHRDVKETYLLEQKIMDLYSEIEIYRRDKDELE----------------------TQMEQLALDYEILKQENHDISYKLE 527 (1160)
Q Consensus 470 e~~d~kE~~~L~~KI~eL~~ele~y~~~~~eLe----------------------~k~eqL~~dye~LkQEN~dis~KLE 527 (1160)
++.....+.|.-|..+.+.|++-...++ ..+++|+.+|+..+-|.-.+.-+++
T Consensus 586 -----~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~~~~t~~~~~~e~~l~qLe~~le~~~~E~~~~~~~l~ 660 (1822)
T KOG4674|consen 586 -----KELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSALDQTEAPRAKEKRLRQLENELESYKKEKRENLKKLQ 660 (1822)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444555555555555533222222 3334555555544444443332222
Q ss_pred HHHHHHHHhhhhcccCCCCCCCCchhhhhhHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 001085 528 QSQLQEQLKMQYECSSIGNGSEPETQVESLENELKIKSKDLSDSLAIINELETHIEGLASELKKQSREFSNFQATIKELE 607 (1160)
Q Consensus 528 qsqlqe~l~~~~ecSs~~~~~~le~~iesle~elk~~~~e~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~ 607 (1160)
+ +++- ++.+.+. +..+++.+++++-. +.-.+..|..-|..+..|+++=.-.|.+|++++-.-.
T Consensus 661 e-~~~~---l~~ev~~------ir~~l~k~~~~~~f-------A~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~ 723 (1822)
T KOG4674|consen 661 E-DFDS---LQKEVTA------IRSQLEKLKNELNL-------AKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQE 723 (1822)
T ss_pred H-HHHH---HHHHHHH------HHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111 1111111 12223333333222 2224555555555555555554455555555554433
Q ss_pred HH---------------------HHHHHHHHHHH-------hhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001085 608 SQ---------------------IEALGNELKEQ-------SKGYSDSLATIKELEAYIKNLEEELEKQAQVYEADLEVV 659 (1160)
Q Consensus 608 ee---------------------lq~s~~eLK~q-------~~e~S~~l~~i~~Le~qv~sl~eel~~Qaq~f~~dl~a~ 659 (1160)
.. +.++..+=+-. ..+|+.++.....|..-+..|+--.....+ .-
T Consensus 724 q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~-------s~ 796 (1822)
T KOG4674|consen 724 QTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEE-------SE 796 (1822)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence 32 22221111100 233333333333333333333322222221 12
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh---hhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001085 660 TRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQM---ASSFDANEKVAMKALAEASELRMQKRHLEEMINK 736 (1160)
Q Consensus 660 ~~~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~qm---sSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~ 736 (1160)
+.-+..+++++-..+-.|.+.+.+....+..+-+=-..++.++ .+..++=...+..++++++.++-....|+..+..
T Consensus 797 ~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~e 876 (1822)
T KOG4674|consen 797 MATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSE 876 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233444455555555666666665555543332222222222 2355666777778888888888888888888888
Q ss_pred HHHHHHhhhhhhHH----------------------HHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHH
Q 001085 737 ASEEALSLRDDYET----------------------KLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGAL 794 (1160)
Q Consensus 737 a~~el~~~~~~~e~----------------------Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~ 794 (1160)
-+..|+.+..++.. ++..|..+|.....+|.+.-......+.-|+..+..-++....+
T Consensus 877 L~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ 956 (1822)
T KOG4674|consen 877 LEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLEL 956 (1822)
T ss_pred HHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888775443321 12222223333333333333333333333333333333333444
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHH
Q 001085 795 SLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQRI 874 (1160)
Q Consensus 795 ~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~ 874 (1160)
...|-.+..++--|..+...|-.. ...++.+++ .+++..+.-+-....++..+...+..+.+.+..+..=+..+
T Consensus 957 ea~ie~~~~k~tslE~~ls~L~~~---~~~l~~e~~---~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~ 1030 (1822)
T KOG4674|consen 957 EAKIESLHKKITSLEEELSELEKE---IENLREELE---LSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDL 1030 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHh---ccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443333333332222 233333332 23333333333334444444444444444444444433444
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhh
Q 001085 875 QRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEKKL 941 (1160)
Q Consensus 875 ~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~ 941 (1160)
+.-...-.+-++..++.-+.=-.+|.++-..|..=..+-.++..++.+|+....++.+++...++..
T Consensus 1031 k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w 1097 (1822)
T KOG4674|consen 1031 QNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDW 1097 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccch
Confidence 4333333344444455555555566777777777777777777888888888888888777665554
No 6
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.50 E-value=1.2e-06 Score=113.16 Aligned_cols=158 Identities=13% Similarity=0.184 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhH-----hhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhh---hHH
Q 001085 767 EQMLKEINNLSNQLEEQKKHDEE-----DSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTT---VKE 838 (1160)
Q Consensus 767 e~m~~el~~~s~ql~~~~~~~~~-----~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~---~~~ 838 (1160)
.++..++.....+++.+...-.. -...+..+|+.++.++..+..++..+..+.++.. .++..++.. +..
T Consensus 795 ~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~---~eI~~Lq~ki~el~~ 871 (1311)
T TIGR00606 795 ERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQ---EQIQHLKSKTNELKS 871 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 33355555555555544332221 1245666666666666666666665555443333 233333221 222
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHH
Q 001085 839 YELLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRK 918 (1160)
Q Consensus 839 ~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~k 918 (1160)
...-+...-..+..| ..+.+....++..++.--.+.+.-+.-|..++..+..++++++......+ +.++.
T Consensus 872 ~klkl~~~l~~r~~l-------e~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 941 (1311)
T TIGR00606 872 EKLQIGTNLQRRQQF-------EEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSN---KKAQD 941 (1311)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 222222222233333 33333334444444444445566677777777777777777776554433 56666
Q ss_pred HHHHhhhhhhhhHHHHHHH
Q 001085 919 QAFQLKGDLKKKEDALNSL 937 (1160)
Q Consensus 919 qv~~lk~~l~kke~~~~~~ 937 (1160)
.+..++..+..-......+
T Consensus 942 ~~~~~~~~~~~~~~~~~~i 960 (1311)
T TIGR00606 942 KVNDIKEKVKNIHGYMKDI 960 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666664444433333
No 7
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.49 E-value=4.3e-08 Score=126.09 Aligned_cols=260 Identities=10% Similarity=0.076 Sum_probs=134.7
Q ss_pred HhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh--hhhhhhHHHHHHHHHHHHHHHhHH--
Q 001085 653 EADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQMAS--SFDANEKVAMKALAEASELRMQKR-- 728 (1160)
Q Consensus 653 ~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~qmsS--t~eenE~~~~~A~~E~seLr~~~~-- 728 (1160)
..++..+.......++....++..+.-+|-.-. .+++++......+.. .+++=+.+..++-.+....+.+..
T Consensus 583 ~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~----~~~~eL~~~~~~i~~~~~~~~~~~~L~~~~~~l~~~~~~~~~~ 658 (1311)
T TIGR00606 583 SKEINQTRDRLAKLNKELASLEQNKNHINNELE----SKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAML 658 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443333 333344433333332 445555566666666666665543
Q ss_pred -HHHHHHHHHHHHH--Hh----------h-----hhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHh
Q 001085 729 -HLEEMINKASEEA--LS----------L-----RDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEED 790 (1160)
Q Consensus 729 -~LEe~L~~a~~el--~~----------~-----~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~ 790 (1160)
.+...+.++-+.+ .- + ...+..+|......+.......+..+.+++...+++..++..-+..
T Consensus 659 ~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~ 738 (1311)
T TIGR00606 659 AGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSI 738 (1311)
T ss_pred HHHHHHHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3334444554444 20 1 1233334554444444455556666666666667776666655555
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHH
Q 001085 791 SGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEE 870 (1160)
Q Consensus 791 ~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~e 870 (1160)
..-...++..|+.++..+..+...+..++ +.+...++.++..+...+.++ ..-..++.+..++..+++..+....+
T Consensus 739 ~~l~~~eip~l~~~l~~le~~l~~~~~~l---e~~~~~l~~~~~~~~~~esL~-~~v~~i~r~~~ei~~l~~qie~l~~~ 814 (1311)
T TIGR00606 739 IDLKEKEIPELRNKLQKVNRDIQRLKNDI---EEQETLLGTIMPEEESAKVCL-TDVTIMERFQMELKDVERKIAQQAAK 814 (1311)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666666665555555443 334445666666666666533 33333444445555555554444444
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhh
Q 001085 871 VQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKG 925 (1160)
Q Consensus 871 l~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~ 925 (1160)
+..... ..-+..|+.++..+..++..+..-+..-..+.+.++++|.+|+.
T Consensus 815 l~~~~~-----~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ 864 (1311)
T TIGR00606 815 LQGSDL-----DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKS 864 (1311)
T ss_pred hccccc-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 442222 12445566666666666666666666666666777777766633
No 8
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.43 E-value=1.5e-06 Score=112.54 Aligned_cols=630 Identities=23% Similarity=0.266 Sum_probs=284.0
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHH----------------------------HhhhhhhHHHHHHHHHHHHHhhhhhh
Q 001085 281 TFTRERSQQASDIEIEKLKSELVALA----------------------------RQADLSELELQTLRKQIVKESKRAQD 332 (1160)
Q Consensus 281 ~l~rerl~eAse~~iEkLKsE~~sL~----------------------------Rqad~s~lELQtLRKQi~kEsKrgqd 332 (1160)
+|.++++... ...|+.+|.|+..|. .....++++++.|+++=.--.--..-
T Consensus 685 ~fA~ekle~L-~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~r 763 (1822)
T KOG4674|consen 685 NLAKEKLENL-EKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEER 763 (1822)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555544 347777777777665 23344444555555544333333444
Q ss_pred HHHHHHHhHHHHhHHHHHHHHHHhhhhhhhHHHHhccccccCCCchHHHHHHHHHhhh-----------hhhhhhhHHHH
Q 001085 333 LSREVISLKEEKDLLKLDCEKLKTFQKRMDEAKVRNKLHFQGGDPWVLLEEIRQELSY-----------EKDLNANLRLQ 401 (1160)
Q Consensus 333 Ls~EVs~Lk~ERD~LK~E~EqLKs~~k~~~ea~~~~rl~~e~~D~~~~leELk~EL~~-----------EKelNaNL~LQ 401 (1160)
|..|+..|..|++.|+.-.-.|.++++......+..+. ++-..+++|.++|.. -++++.++..|
T Consensus 764 L~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~-----~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~ 838 (1822)
T KOG4674|consen 764 LSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKD-----KCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQ 838 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 55555555555555555555555555543332222222 222445555555544 34556666666
Q ss_pred HHHhhh-------hhHHHHHHhhhHHHHHHHHhhhhcccccccCcccchHHhhhhhcCC---CCCchHhHHHHHHHHhhc
Q 001085 402 LQKTQE-------SNAELILAVQDLDEMLEQKNREISNHSNKSGSYVNAKELRRNISKS---QTDDDEDQKALEELVKEH 471 (1160)
Q Consensus 402 LqKTQE-------SN~ELvlaVqDLEEmLEQk~~EIs~Ls~~~~~~~n~~e~~~~l~~~---etddde~q~~l~~l~ke~ 471 (1160)
|...|. -+-.++-.|.-+...+.+...++++|...+.+..- +...... -.|.......|.. .
T Consensus 839 l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~----~~~~l~~~~~~~d~~~~~~~Lr~---~- 910 (1822)
T KOG4674|consen 839 LENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKT----QLLNLDSKSSNEDATILEDTLRK---E- 910 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHhhccccchhhhhhhhhHHHHH---H-
Confidence 666665 12222223333333344444444444433332110 0000000 0010000011110 0
Q ss_pred cChhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-------HHHHHHHhhhhcchhhhHh--HHHHHHHHh-hhhcc
Q 001085 472 RDVKETYLLEQKIMDLYSEIEIYRRDKDELETQMEQL-------ALDYEILKQENHDISYKLE--QSQLQEQLK-MQYEC 541 (1160)
Q Consensus 472 ~d~kE~~~L~~KI~eL~~ele~y~~~~~eLe~k~eqL-------~~dye~LkQEN~dis~KLE--qsqlqe~l~-~~~ec 541 (1160)
..++..|+.++.+=+.+|..|.....-+++-+.++ ..+|+.-...+|+=..-|| -+.|+..+. ++.+|
T Consensus 911 --~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~ 988 (1822)
T KOG4674|consen 911 --LEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREEL 988 (1822)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12556667777777777777777766666444443 2333333333332222222 122222110 11123
Q ss_pred cCCCCCCCCc-------hhhhhhHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHH-------HHhh--------------
Q 001085 542 SSIGNGSEPE-------TQVESLENELKIKSKDLSDSLAIINELETHIEGLASEL-------KKQS-------------- 593 (1160)
Q Consensus 542 Ss~~~~~~le-------~~iesle~elk~~~~e~sdSl~~I~~Le~qi~~LE~El-------e~Q~-------------- 593 (1160)
-.. .+..+ .++.++-++++-...-.+.-...+..++.++.....-| +...
T Consensus 989 ~~~--~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ 1066 (1822)
T KOG4674|consen 989 ELS--TKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLR 1066 (1822)
T ss_pred hcc--ccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 12222 45555555555555445555555555554444442211 1111
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHH-----------hhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 001085 594 REFSNFQATIKELESQIEALGNELKEQ-----------SKGYSDSLATIKELEAYIKNLEEELEKQAQVYEADLEVVTRA 662 (1160)
Q Consensus 594 ~~f~~~qst~e~L~eelq~s~~eLK~q-----------~~e~S~~l~~i~~Le~qv~sl~eel~~Qaq~f~~dl~a~~~~ 662 (1160)
..|..++..+..|...+.+..+.|..+ ..+-+.+-+.|..|+.|-+.|+..+..-++....-.-..+..
T Consensus 1067 ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~ 1146 (1822)
T KOG4674|consen 1067 EEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLL 1146 (1822)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccc
Confidence 233344444455554445555544444 334445556666677777777754444332222100001111
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhh------------------------hhhhhHHHHHHHH
Q 001085 663 KVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQMASS------------------------FDANEKVAMKALA 718 (1160)
Q Consensus 663 k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~qmsSt------------------------~eenE~~~~~A~~ 718 (1160)
.-.+=++.+.- ||+.+-=-.....-+..|-.+|..++++. .++.+ -++.-+.
T Consensus 1147 g~sdL~~iv~~---LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~-~i~~~v~ 1222 (1822)
T KOG4674|consen 1147 GLSDLQNIVSF---LRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHK-EILEKVE 1222 (1822)
T ss_pred chHHHHHHHHH---HHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhh-HHHHHHH
Confidence 12222333222 33222222222334555666666555552 22222 2456678
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhh---hHHH
Q 001085 719 EASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDS---GALS 795 (1160)
Q Consensus 719 E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~---~~~~ 795 (1160)
+++.||..|..|.+.+....+.++-|++ +|..|...+.-....+..+.-++......+.-++..-+.+- +++.
T Consensus 1223 ~vNll~EsN~~LRee~~~~~~k~qEl~~----~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~ 1298 (1822)
T KOG4674|consen 1223 EVNLLRESNKVLREENEANLEKIQELRD----KIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLL 1298 (1822)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988888888877777 55555444444444444444444444444433322222111 1111
Q ss_pred HH-HHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHH--------HHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHH-HHHH
Q 001085 796 LE-IQQLKADTEKLMMDNKSLSEEAEQKESLRVEL--------AQMKTTVKEYELLIQRANRERDELESTIALVK-KEAE 865 (1160)
Q Consensus 796 ~e-iq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~--------~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k-~eae 865 (1160)
.. -+.=..++++|..++..|.++++-++++-.++ ++++.-+++.....+..+.+...|....-.+. ..-+
T Consensus 1299 ~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e 1378 (1822)
T KOG4674|consen 1299 EKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSE 1378 (1822)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11112334444444444444444444433333 23334444444445555555444444332221 1111
Q ss_pred hhHH--HHH-------H---HhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh-hHH
Q 001085 866 SSVE--EVQ-------R---IQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKK-KED 932 (1160)
Q Consensus 866 ~~~~--el~-------~---~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~k-ke~ 932 (1160)
.... |+. . +..-|-++...=-.|..|++.|+-+..+..+....-.++-++..++.+..+.+.++ ...
T Consensus 1379 ~~~q~~el~~~~~~~~~~~e~t~rk~e~~~~k~~~~~e~~sl~eeL~e~~q~~~~~~s~~e~i~~e~~~~~k~~~~~~~e 1458 (1822)
T KOG4674|consen 1379 KNAQELELSDKKKAHELMQEDTSRKLEKLKEKLELSEELESLKEELEELQQLQATLQSETEAITKELFEAKKEEEKSTTE 1458 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHhhhhHHH
Confidence 1111 111 1 11112222111111556777777777665556666667777777777777777666 433
Q ss_pred HHHH
Q 001085 933 ALNS 936 (1160)
Q Consensus 933 ~~~~ 936 (1160)
.+..
T Consensus 1459 ~~~~ 1462 (1822)
T KOG4674|consen 1459 RLLE 1462 (1822)
T ss_pred HHHH
Confidence 3333
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.42 E-value=4.1e-06 Score=104.12 Aligned_cols=26 Identities=15% Similarity=0.380 Sum_probs=14.6
Q ss_pred hhhhhhcccccccccchhhhhHhhhh
Q 001085 1128 ERYSEISLKFAEVEGERQKLVMTLRN 1153 (1160)
Q Consensus 1128 ~ryse~sl~faevegerq~lvm~~rn 1153 (1160)
+||..++=++..++..+..|.-+++.
T Consensus 993 er~~~l~~q~~dL~~~~~~L~~~i~~ 1018 (1179)
T TIGR02168 993 EEYEELKERYDFLTAQKEDLTEAKET 1018 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666555555555544443
No 10
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.28 E-value=3.6e-05 Score=98.84 Aligned_cols=211 Identities=26% Similarity=0.359 Sum_probs=118.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhh---hhhHhhhHHHHHHH
Q 001085 723 LRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKK---HDEEDSGALSLEIQ 799 (1160)
Q Consensus 723 Lr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~---~~~~~~~~~~~eiq 799 (1160)
|..+...++..+..+..++..++. ++..+...+...+.++..+...++....++..+.. .-......+..++.
T Consensus 672 l~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 747 (1163)
T COG1196 672 LEEELAELEAQLEKLEEELKSLKN----ELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELE 747 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443 55555555555555555555554444444432211 11222233444444
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhh
Q 001085 800 QLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIED 879 (1160)
Q Consensus 800 ~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kd 879 (1160)
.|..++..+..+...+.+.+..- ...+..++..+.++....+.....+..+...+..++........++.......+
T Consensus 748 ~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1163)
T COG1196 748 ELEEELEELQERLEELEEELESL---EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRE 824 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333222 223344555566666666677777788888888887777777777777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHh
Q 001085 880 EKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEKK 940 (1160)
Q Consensus 880 eke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~ 940 (1160)
--+..|..++-++..+..+++.|+..+..-+.+.+.+..++..++.++..-++.+...+..
T Consensus 825 ~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~ 885 (1163)
T COG1196 825 RLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEE 885 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777777777777777777776666666666655555555544443
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=99.26 E-value=3.1e-05 Score=95.88 Aligned_cols=111 Identities=22% Similarity=0.290 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhHhHHHHHHHHhhhhcccCCCCCCCCchhhhhhHHHH
Q 001085 482 QKIMDLYSEIEIYRRDKDELETQMEQLALDYEILKQENHDISYKLEQSQLQEQLKMQYECSSIGNGSEPETQVESLENEL 561 (1160)
Q Consensus 482 ~KI~eL~~ele~y~~~~~eLe~k~eqL~~dye~LkQEN~dis~KLEqsqlqe~l~~~~ecSs~~~~~~le~~iesle~el 561 (1160)
.++.++....+.+.+....|+....++..++..+..+-.++.++++. .+.++..+++++
T Consensus 335 ~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~---------------------~~~~l~~l~~el 393 (880)
T PRK02224 335 VAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVED---------------------RREEIEELEEEI 393 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHH
Confidence 33344433444444555555555555555554444443333333332 122333444444
Q ss_pred HhhhhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHH
Q 001085 562 KIKSKDLSDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEAL 613 (1160)
Q Consensus 562 k~~~~e~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s 613 (1160)
...-..+.+....+..++..+..++.+++.-...-..+++++..+..-+...
T Consensus 394 ~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 445 (880)
T PRK02224 394 EELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEA 445 (880)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433334444456667777777777666665555555555555544444443
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=99.24 E-value=1.7e-05 Score=98.22 Aligned_cols=83 Identities=14% Similarity=0.182 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHHH---HHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHH
Q 001085 794 LSLEIQQLKADTEKLMMDNKSLSEEAE---QKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEE 870 (1160)
Q Consensus 794 ~~~eiq~l~~~~~~l~~e~~~l~e~~e---~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~e 870 (1160)
+...+..+..++..|..+...+-...+ ........+..++....+.+.++......+.+....+..+.++++....+
T Consensus 473 ~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~ 552 (880)
T PRK02224 473 DRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAE 552 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333332 12222333444444444444444444444444455555555555555444
Q ss_pred HHHHhh
Q 001085 871 VQRIQR 876 (1160)
Q Consensus 871 l~~~~~ 876 (1160)
+.....
T Consensus 553 ~~~~~~ 558 (880)
T PRK02224 553 AEEKRE 558 (880)
T ss_pred HHHHHH
Confidence 444443
No 13
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.22 E-value=5.2e-05 Score=94.59 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=10.8
Q ss_pred cceEEEEeecCCCCcc
Q 001085 33 NALMISVVPLDVGKPT 48 (1160)
Q Consensus 33 DkLfVSiVp~DtGKtT 48 (1160)
+.+++=+=|--+||+|
T Consensus 23 ~~~~~i~G~NGsGKS~ 38 (1179)
T TIGR02168 23 KGITGIVGPNGCGKSN 38 (1179)
T ss_pred CCcEEEECCCCCChhH
Confidence 4456666677788885
No 14
>PRK03918 chromosome segregation protein; Provisional
Probab=99.22 E-value=4.8e-05 Score=93.94 Aligned_cols=56 Identities=29% Similarity=0.408 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhh
Q 001085 728 RHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQK 784 (1160)
Q Consensus 728 ~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~ 784 (1160)
..+...+.....++..+..+++ ++..+..+++.....+..+..+++....+|..+.
T Consensus 528 ~~l~~~~~~l~~~l~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 583 (880)
T PRK03918 528 EKLKEKLIKLKGEIKSLKKELE-KLEELKKKLAELEKKLDELEEELAELLKELEELG 583 (880)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3444455555555555555554 4445555544444444445445555455544443
No 15
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.21 E-value=6.2e-05 Score=94.42 Aligned_cols=40 Identities=25% Similarity=0.406 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHH
Q 001085 574 IINELETHIEGLASELKKQSREFSNFQATIKELESQIEAL 613 (1160)
Q Consensus 574 ~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s 613 (1160)
.+..++.++..++.++.+-......++..+..+..++..+
T Consensus 449 ~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l 488 (1164)
T TIGR02169 449 EIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKL 488 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444333
No 16
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.07 E-value=0.00021 Score=88.48 Aligned_cols=352 Identities=23% Similarity=0.331 Sum_probs=199.1
Q ss_pred HHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhh---hhhhhHHHHHHHHHHHHHHHh
Q 001085 650 QVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQMASS---FDANEKVAMKALAEASELRMQ 726 (1160)
Q Consensus 650 q~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~qmsSt---~eenE~~~~~A~~E~seLr~~ 726 (1160)
.++...+++++....++-++.....+.|+... ..++.||-|+.+|...+-.+ ++-....+.++-.|.+.+...
T Consensus 304 ~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke----~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~E 379 (775)
T PF10174_consen 304 EALQTRLETLEEQDSDMRQHIEVLKESLRAKE----QEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGE 379 (775)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888777777777776433 34567888888888777543 344444556677787777777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHH----------------HHh-------HHHHHh
Q 001085 727 KRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEIN----------------NLS-------NQLEEQ 783 (1160)
Q Consensus 727 ~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~----------------~~s-------~ql~~~ 783 (1160)
...|-+++.....++..++. ||..|..+|.-+..++..+..+|. ... ..|..+
T Consensus 380 i~~l~d~~d~~e~ki~~Lq~----kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~ 455 (775)
T PF10174_consen 380 IEDLRDMLDKKERKINVLQK----KIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQ 455 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888877 777777777666665554444443 222 222211
Q ss_pred ----hhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHH------------------HHHhHHHHHHHhhhhhHHHHH
Q 001085 784 ----KKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAE------------------QKESLRVELAQMKTTVKEYEL 841 (1160)
Q Consensus 784 ----~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e------------------~~e~~~~~~~~~k~~~~~~~~ 841 (1160)
.+..-+.+..+..+++.|++.++.|..+.+...-++. .-+.|...+++.+.-+...+.
T Consensus 456 r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ 535 (775)
T PF10174_consen 456 RERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEK 535 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 1122233466667777777777766655443221110 011233344444444444444
Q ss_pred HHHH------hhhhhhhHHHHHHHHHHHHHhhHHHHHHHhh-------hhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhh
Q 001085 842 LIQR------ANRERDELESTIALVKKEAESSVEEVQRIQR-------IEDEKEAAVELLKSELELLKVQCHNLKQALVE 908 (1160)
Q Consensus 842 ~~~~------~~~e~~~l~~~~~~~k~eae~~~~el~~~~~-------~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~ 908 (1160)
.+.+ .+.++..|+..++..+.++.++..|+.++.. -|+.+|.-|+.|.++++..-.+....+...-.
T Consensus 536 ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek~~~~~~~~~~~~~~ 615 (775)
T PF10174_consen 536 QLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKELEKAQMHLAKQQETVEA 615 (775)
T ss_pred HHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhhhhhh
Confidence 4433 3556677888888887788888777777764 57777888999999976544333332221111
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhccccCccCcCccccccCCCCCCCCCChhHHHhHHHHHHHhhhhhh
Q 001085 909 DESEKEKLRKQAFQLKGDLKKKEDALNSLEKKLKDSNRRASVSDGTRTTLRNNKSAPVSQGSKEIANLRERIKLLEGQIK 988 (1160)
Q Consensus 909 ~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~~~s~~~~~~~~~t~~~~~n~~~~~~~~~s~~~a~l~~~ik~~e~~ik 988 (1160)
.-.+ +..++.+.-|+-.++ +.....-+..+..+.-.. . .-.++++.--+-+..|...++.+-.++.
T Consensus 616 ~k~~-~~~~~~~elleea~R--ee~~~t~e~~l~~s~q~~------~-----~~~~~~~~~e~qleeL~~~l~k~~~Eld 681 (775)
T PF10174_consen 616 TKIE-ENKRKRAELLEEALR--EEVSITEERELAQSQQKL------A-----QQEAQSSHLEKQLEELEAALEKLRQELD 681 (775)
T ss_pred hhhH-HHHHhhhHHHHHHHh--hhhhHHHHHHHhhhhhhh------h-----hhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 1111 334444444333222 222223333333331110 0 0001111222334444444444444444
Q ss_pred hHHHHHhhcchhhHHHhhhhhhHHHHHHHHHHhhh
Q 001085 989 SKEIALEASTNSFVEKEKDLKNKIEELECRVEELN 1023 (1160)
Q Consensus 989 ~~~~a~~~s~~~~~~ke~~l~~~i~e~~~~~~e~n 1023 (1160)
..=.-|+++-.+..+++..|.+=-.|+..-++|+=
T Consensus 682 ~l~~qL~ssq~~L~e~d~~L~~le~Errk~lEE~l 716 (775)
T PF10174_consen 682 QLKAQLESSQQSLMERDQELNALEAERRKQLEEVL 716 (775)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 44445666667778888888888888877777653
No 17
>PRK03918 chromosome segregation protein; Provisional
Probab=98.97 E-value=0.00047 Score=85.34 Aligned_cols=31 Identities=16% Similarity=0.393 Sum_probs=17.4
Q ss_pred hhhhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001085 745 RDDYETKLCQLSNQLNVKTDQIEQMLKEINN 775 (1160)
Q Consensus 745 ~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~ 775 (1160)
...|+..+.+|.+++......+..+..++..
T Consensus 454 ~~~~~~ei~~l~~~~~~l~~~~~~l~~~~~~ 484 (880)
T PRK03918 454 LEEYTAELKRIEKELKEIEEKERKLRKELRE 484 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666555555555544443
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.89 E-value=0.0013 Score=85.07 Aligned_cols=201 Identities=29% Similarity=0.370 Sum_probs=105.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHH---HHhHHHHHhhhhhhHhhhH
Q 001085 717 LAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEIN---NLSNQLEEQKKHDEEDSGA 793 (1160)
Q Consensus 717 ~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~---~~s~ql~~~~~~~~~~~~~ 793 (1160)
..++..++.+...++..+..+...++.+.. .+..+..++.....+++....++. ....++...-+.-+..+..
T Consensus 673 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 748 (1163)
T COG1196 673 EEELAELEAQLEKLEEELKSLKNELRSLED----LLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEE 748 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777776666666666666666554 444444444444444444443333 2222222222333333344
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHH-------HHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHh
Q 001085 794 LSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVEL-------AQMKTTVKEYELLIQRANRERDELESTIALVKKEAES 866 (1160)
Q Consensus 794 ~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~-------~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~ 866 (1160)
+..++..+..++..+..+...+.+.. ..+...+ ......+..++..+.....+...+..++.......+.
T Consensus 749 ~~~~~~~~~~~~~~~~~~l~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (1163)
T COG1196 749 LEEELEELQERLEELEEELESLEEAL---AKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRER 825 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555554443 2222222 2233455555666666666666666666666666666
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhh
Q 001085 867 SVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLK 924 (1160)
Q Consensus 867 ~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk 924 (1160)
...++..+..-.++-+..+..|..++..+.....+++..+.+-..++..+..-+..++
T Consensus 826 ~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~ 883 (1163)
T COG1196 826 LEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELE 883 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666665555555655555555555555555544444444433333333333
No 19
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.83 E-value=0.0009 Score=79.92 Aligned_cols=427 Identities=22% Similarity=0.281 Sum_probs=225.0
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH-----HHHHHHHHHHhhhhhhHHHhHHHHHHHHHH
Q 001085 566 KDLSDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQI-----EALGNELKEQSKGYSDSLATIKELEAYIKN 640 (1160)
Q Consensus 566 ~e~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eel-----q~s~~eLK~q~~e~S~~l~~i~~Le~qv~s 640 (1160)
.||....-+|.+|..+++.-..+-..-.+..--.+..+..++... .....+|..-+..|...+..+......+..
T Consensus 62 ~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~ 141 (522)
T PF05701_consen 62 SELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQELEK 141 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544332221122222222233333332 112333333344444444444433333333
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhh---hhhhhHHHHHHH
Q 001085 641 LEEELEKQAQVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQMASS---FDANEKVAMKAL 717 (1160)
Q Consensus 641 l~eel~~Qaq~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~qmsSt---~eenE~~~~~A~ 717 (1160)
+ ..|++++..++..-..+|..|..+. ..|.-.|+-|..|+.+|=.-+.+. +.+.+.-...++
T Consensus 142 l-----------r~e~~~~~~~k~~A~~~aeea~~~a----~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~ 206 (522)
T PF05701_consen 142 L-----------RQELASALDAKNAALKQAEEAVSAA----EENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIA 206 (522)
T ss_pred H-----------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3333444444444444444443333 467777888888877764444333 233333333333
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhH-HHHH---hhhhh---hHh
Q 001085 718 AEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSN-QLEE---QKKHD---EED 790 (1160)
Q Consensus 718 ~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~-ql~~---~~~~~---~~~ 790 (1160)
.+-.. +...++..|..+..++..|+.++ .-.+.|...|+.....+..+-.+|..... .+.. .++.. ...
T Consensus 207 ~~~~~---~~~~~~~~leeae~~l~~L~~e~-~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~ 282 (522)
T PF05701_consen 207 AEREQ---DAEEWEKELEEAEEELEELKEEL-EAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSS 282 (522)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHH
Confidence 33222 23456666777888888888777 56677777777777777766666665544 2222 11111 112
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHH
Q 001085 791 SGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEE 870 (1160)
Q Consensus 791 ~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~e 870 (1160)
.+....++...+.+|++...|...|.-.+ +.|+.+|+..|..+..+..-..........|+.++..+ ..+
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~v---esL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~-------r~e 352 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASV---ESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKT-------RSE 352 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHH-------HHH
Confidence 46667777777777777777777777654 66777777776665555544444444444444444433 333
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhccc----
Q 001085 871 VQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEKKLKDSNR---- 946 (1160)
Q Consensus 871 l~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~~~s~~---- 946 (1160)
|..++.-..+-...+..|...|..+.......|.-...-..|..+++..+.+.+..+..-+.-+....+-+...+-
T Consensus 353 Lea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~ 432 (522)
T PF05701_consen 353 LEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEAL 432 (522)
T ss_pred HHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333333332334556666777777777777777777777788888888888888877777666655554422210
Q ss_pred ---cC-ccCcCccccccC--CCCCCCCCChhHHHhHHHHHHHhhhhhhhHHHHHhhcchhhHHHhhhhhhHHHHHHHHHH
Q 001085 947 ---RA-SVSDGTRTTLRN--NKSAPVSQGSKEIANLRERIKLLEGQIKSKEIALEASTNSFVEKEKDLKNKIEELECRVE 1020 (1160)
Q Consensus 947 ---~~-~~~~~t~~~~~n--~~~~~~~~~s~~~a~l~~~ik~~e~~ik~~~~a~~~s~~~~~~ke~~l~~~i~e~~~~~~ 1020 (1160)
.+ .+++++...... ..+..|.-.-.|.-.|.-|...-|....-|-.+--+=-..-=.-|.+...|+++....++
T Consensus 433 Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy~~L~~ka~e~ee~a~kkva~A~aqve~ak~se~e~l~kle~~~~e~~ 512 (522)
T PF05701_consen 433 ALAEIKALSESESSSRASDSESSSKVTLSLEEYESLSKKAEEAEELAEKKVAAAMAQVEAAKASEKEILEKLEEAMKEIE 512 (522)
T ss_pred HHHHHHHhhcccccccccccCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 122222111100 022223334567778888888888888777554422211112235556666666665555
Q ss_pred h
Q 001085 1021 E 1021 (1160)
Q Consensus 1021 e 1021 (1160)
+
T Consensus 513 ~ 513 (522)
T PF05701_consen 513 E 513 (522)
T ss_pred H
Confidence 4
No 20
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.74 E-value=0.0025 Score=79.28 Aligned_cols=284 Identities=20% Similarity=0.323 Sum_probs=158.8
Q ss_pred HHHHHhHHHHhHHHHHHHHHHhhhhhhhHHHHhccccccCCCchHHHHHHHHHh---hhhhhhhhhHHHHHHHhhhhhHH
Q 001085 335 REVISLKEEKDLLKLDCEKLKTFQKRMDEAKVRNKLHFQGGDPWVLLEEIRQEL---SYEKDLNANLRLQLQKTQESNAE 411 (1160)
Q Consensus 335 ~EVs~Lk~ERD~LK~E~EqLKs~~k~~~ea~~~~rl~~e~~D~~~~leELk~EL---~~EKelNaNL~LQLqKTQESN~E 411 (1160)
..+..|..|||.+..|++.|+.-...+..... +.+-...-...-++=|...| +..++...--...+..+. +
T Consensus 114 ~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e--~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~----~ 187 (775)
T PF10174_consen 114 EQFERLQAERERLQRELERLRKTLEELQLRIE--TQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIR----E 187 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHH----H
Confidence 46777889999999999999865443211111 11100000111122222222 111111111111222333 4
Q ss_pred HHHHhhhHHHHHHHHhhhhcccccccCcccchHHhhhhhcCCCCCchHhHHHHHHHHhhcc-----------C-hhhHHH
Q 001085 412 LILAVQDLDEMLEQKNREISNHSNKSGSYVNAKELRRNISKSQTDDDEDQKALEELVKEHR-----------D-VKETYL 479 (1160)
Q Consensus 412 LvlaVqDLEEmLEQk~~EIs~Ls~~~~~~~n~~e~~~~l~~~etddde~q~~l~~l~ke~~-----------d-~kE~~~ 479 (1160)
+-..+..|+.+++++.++..-+.. .+...+.. .. ++....++..++...+ + ..|+++
T Consensus 188 ~e~~~~~le~lle~~e~~~~~~r~---------~l~~~~~~-~~-~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~ 256 (775)
T PF10174_consen 188 AEARIMRLESLLERKEKEHMEARE---------QLHRRLQM-ER-DDAETEALQTVIEEKDTKIASLERMLRDLEDEIYR 256 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhH---------HHHHHhhc-CC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567888889888877643311 00000000 00 1111112222221111 0 235555
Q ss_pred HHHHHH-------HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhHhHHHHHHHHhhhhcccCCCCCCCCch
Q 001085 480 LEQKIM-------DLYSEIEIYRRDKDELETQMEQLALDYEILKQENHDISYKLEQSQLQEQLKMQYECSSIGNGSEPET 552 (1160)
Q Consensus 480 L~~KI~-------eL~~ele~y~~~~~eLe~k~eqL~~dye~LkQEN~dis~KLEqsqlqe~l~~~~ecSs~~~~~~le~ 552 (1160)
|+..+. .+.-+++.|+.....+..+|.++..+...-++|...+..+|+--.
T Consensus 257 L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~---------------------- 314 (775)
T PF10174_consen 257 LRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLE---------------------- 314 (775)
T ss_pred HHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 544443 223356666666666666677776666666666555544443111
Q ss_pred hhhhhHHHHHhhhhhchhhHH----HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 001085 553 QVESLENELKIKSKDLSDSLA----IINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSL 628 (1160)
Q Consensus 553 ~iesle~elk~~~~e~sdSl~----~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l 628 (1160)
+--.++..|+.-+.+|+. -...|++.|.+|..+|+.--.-+-+-+..+..+.+++--...+|..-...|--.-
T Consensus 315 ---~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e 391 (775)
T PF10174_consen 315 ---EQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKE 391 (775)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111344555555555665 3556888888888888887777778888888888888777777777777777777
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001085 629 ATIKELEAYIKNLEEELEKQAQVYEADLEVVT 660 (1160)
Q Consensus 629 ~~i~~Le~qv~sl~eel~~Qaq~f~~dl~a~~ 660 (1160)
.-|+.|..+|.+|++.+..+...+....+.+.
T Consensus 392 ~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 392 RKINVLQKKIENLEEQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78888999999999999999988888887777
No 21
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.54 E-value=0.007 Score=73.39 Aligned_cols=360 Identities=24% Similarity=0.267 Sum_probs=202.6
Q ss_pred hhhHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHH--HHhhhhhhHHHhHH
Q 001085 555 ESLENELKIKSKDLSDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELK--EQSKGYSDSLATIK 632 (1160)
Q Consensus 555 esle~elk~~~~e~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK--~q~~e~S~~l~~i~ 632 (1160)
+.+-++++-|-.++++|-+.|..|+.+...++ ++..++-..||+- +.|| ..+.+++..+..|.
T Consensus 526 ~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~q--------------at~d~a~~Dlqk~-nrlkQdear~~~~~lvqqv~ 590 (961)
T KOG4673|consen 526 EKHQAELTRQKDYYSNSRALAAALEAQALAEQ--------------ATNDEARSDLQKE-NRLKQDEARERESMLVQQVE 590 (961)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--------------HhhhhhhhhHHHH-hhhhhhHHHHHHHHHHHHHH
Confidence 34456677777777778888887777766655 5555555556554 4455 44677888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHH--------------HHHHHHHHHHHhhhhhHHHHHHHHH-HH
Q 001085 633 ELEAYIKNLEEELEKQAQVYEADLEVVTRAKVEQEQRA--------------IQAEETLRKTRLKNANTAERLQEEF-RR 697 (1160)
Q Consensus 633 ~Le~qv~sl~eel~~Qaq~f~~dl~a~~~~k~eqE~ra--------------i~aEeaLrktR~~na~~~e~LqeE~-~~ 697 (1160)
+|--.+..-+......++.|-.++..+++--..-|.|+ +|-=++|..|--.-+.+-+++.+-+ .|
T Consensus 591 dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~r 670 (961)
T KOG4673|consen 591 DLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNER 670 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 99999988899999999999999999988887777775 2334556666555555555543322 22
Q ss_pred HH-HHh--hhhhhhhhHHHHHH-----------HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHH-------------
Q 001085 698 LS-VQM--ASSFDANEKVAMKA-----------LAEASELRMQKRHLEEMINKASEEALSLRDDYET------------- 750 (1160)
Q Consensus 698 LS-~qm--sSt~eenE~~~~~A-----------~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~------------- 750 (1160)
|+ .|+ .+.+. .|....+- ---.+=||+.+..|...|.++...+.-.+++|-.
T Consensus 671 L~dSQtllr~~v~-~eqgekqElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~ 749 (961)
T KOG4673|consen 671 LSDSQTLLRINVL-EEQGEKQELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRAN 749 (961)
T ss_pred hhhHHHHHHHHHH-HHhhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 22 011 00000 01000000 0012334444444444444433322222322211
Q ss_pred HHHHHHHHHhh---hhHHHHHHHHHHHHHhHHHHHhhhhhhHhh------hHHHHHHH------HHHHhhhhhhhhhhhh
Q 001085 751 KLCQLSNQLNV---KTDQIEQMLKEINNLSNQLEEQKKHDEEDS------GALSLEIQ------QLKADTEKLMMDNKSL 815 (1160)
Q Consensus 751 Ki~~L~~qL~~---~~~~~e~m~~el~~~s~ql~~~~~~~~~~~------~~~~~eiq------~l~~~~~~l~~e~~~l 815 (1160)
.+.++...+.. ...++..|..++..|.-.++-+-+.+-+.. ...+.... ++.-.+ .-++..+
T Consensus 750 ~le~e~r~~k~~~~q~lq~~ll~ve~~~k~~e~~~~~~~~lers~a~i~Ssp~~s~~~SgSnee~ag~~~---~f~~dd~ 826 (961)
T KOG4673|consen 750 QLEVEIRELKRKHKQELQEVLLHVELIQKDLEREKASRLDLERSTARINSSPVSSQLPSGSNEEIAGQNS---AFENDDF 826 (961)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhCHHHHhhcccccCccCCCCchhhCCCCchHhHhcccc---hhhccch
Confidence 11111111100 111223333333333333322221111110 00000000 000000 0011111
Q ss_pred hHHH--------HHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhh---HHHHH
Q 001085 816 SEEA--------EQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIED---EKEAA 884 (1160)
Q Consensus 816 ~e~~--------e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kd---eke~~ 884 (1160)
+..- -+--.|.. +..--+.++++++++..+.-|+.-|.-+|+.+.+.--..-+||-+|..-.+ ||-.+
T Consensus 827 s~~~s~gqq~~~~~~~hl~~-~~~nttt~eh~eall~QreGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~ 905 (961)
T KOG4673|consen 827 SEKRSMGQQEATMSPYHLKS-ITPNTTTSEHYEALLRQREGELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADR 905 (961)
T ss_pred hhhhcCCCCCcccchhHHhh-hcCCCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1110 00011110 111123578999999999999999999999998887777888888876443 56788
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHH
Q 001085 885 VELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDAL 934 (1160)
Q Consensus 885 ~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~ 934 (1160)
|-.+..+++.|+-.|+-+=+..-+..-|-|.||--+..||.-.|--=|.+
T Consensus 906 ~p~~~~~ledL~qRy~a~LqmyGEk~Ee~EELrlDl~dlK~mYk~QIdeL 955 (961)
T KOG4673|consen 906 VPGIKAELEDLRQRYAAALQMYGEKDEELEELRLDLVDLKEMYKEQIDEL 955 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988777655543
No 22
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.49 E-value=0.017 Score=75.27 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=25.0
Q ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh
Q 001085 1100 CSINDMLIELDSLKEKNQCMESELKDMQERYSE 1132 (1160)
Q Consensus 1100 ~~~~~~~~~~~~lk~~~~~~e~el~em~~ryse 1132 (1160)
..+++++..+..++.+.+.+..+++.--+++..
T Consensus 895 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~f~~ 927 (1201)
T PF12128_consen 895 GSVDERLRDLEDLLQRRKRLREELKKAVERFKG 927 (1201)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888888766666653
No 23
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.46 E-value=3e-08 Score=122.97 Aligned_cols=189 Identities=22% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001085 825 LRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQ 904 (1160)
Q Consensus 825 ~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~ 904 (1160)
+.-.+..+...++++...+......++++...++.+.+.+.....||..++..-+.-+..-..+.+++..+..++++|-.
T Consensus 572 ~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~ 651 (859)
T PF01576_consen 572 AQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTS 651 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344556666777777888888888888888888888888888999999988888888888999999999999999865
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhccccCccCcCccccccCCCCCCCCCChhHHHhHHHHHHHhh
Q 001085 905 ALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEKKLKDSNRRASVSDGTRTTLRNNKSAPVSQGSKEIANLRERIKLLE 984 (1160)
Q Consensus 905 ~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~~~s~~~~~~~~~t~~~~~n~~~~~~~~~s~~~a~l~~~ik~~e 984 (1160)
.-+.=..+|-+|-..|.+|.++|.--...+...+.|.+-.-..+. .-.+.+..-... ....-+.-.+|...||-|-
T Consensus 652 ~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~---~l~~eL~~Eq~~-~~~le~~k~~LE~q~keLq 727 (859)
T PF01576_consen 652 QNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAA---QLAEELRQEQDH-NQHLEKEKKALERQVKELQ 727 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 555555789999999999999999999998888888776644431 111111111111 1111122334555555555
Q ss_pred hhhhhHHHHHhhcchhhHHHhhhhhhHHHHHHHHHH
Q 001085 985 GQIKSKEIALEASTNSFVEKEKDLKNKIEELECRVE 1020 (1160)
Q Consensus 985 ~~ik~~~~a~~~s~~~~~~ke~~l~~~i~e~~~~~~ 1020 (1160)
..|-..|++.-.+....+-+ |..||.+|+.+|+
T Consensus 728 ~rl~e~E~~~~~~~k~~i~k---LE~ri~eLE~~Le 760 (859)
T PF01576_consen 728 ARLEEAEQSALKGGKKQIAK---LEARIRELEEELE 760 (859)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHhhhcccccHHHH---HhHHHHHHHHHHH
Confidence 55555555544443344333 7778888888887
No 24
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.44 E-value=0.0025 Score=76.36 Aligned_cols=145 Identities=22% Similarity=0.240 Sum_probs=79.1
Q ss_pred hHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHH----HHhhhhhhhHHHHHHHHHHH
Q 001085 788 EEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLI----QRANRERDELESTIALVKKE 863 (1160)
Q Consensus 788 ~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~----~~~~~e~~~l~~~~~~~k~e 863 (1160)
.+...+...+...|..++..+..-....+-.+- ..|.+.++++....+....+ ..+..+|..|.-.....+++
T Consensus 296 qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh---~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ 372 (546)
T PF07888_consen 296 QEQLQASQQEAELLRKELSDAVNVRDRTMAELH---QARLEAAQLKLQLADASLELKEGRSQWAQEKQALQHSAEADKDE 372 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 334444455555555555554444433333221 11223333333333332222 23445566666556666667
Q ss_pred HHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhH-----------HHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHH
Q 001085 864 AESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCH-----------NLKQALVEDESEKEKLRKQAFQLKGDLKKKED 932 (1160)
Q Consensus 864 ae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~-----------~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~ 932 (1160)
+++.-.|+..+-..=.|+-.--..|+.+|...++.-. +||.+|---+.|||.|+.---.|...+..-|.
T Consensus 373 ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~ 452 (546)
T PF07888_consen 373 IEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQ 452 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766655555555555577777766554433 78888877788888877766666666555554
Q ss_pred HHH
Q 001085 933 ALN 935 (1160)
Q Consensus 933 ~~~ 935 (1160)
.+.
T Consensus 453 r~~ 455 (546)
T PF07888_consen 453 RLD 455 (546)
T ss_pred HHH
Confidence 444
No 25
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.43 E-value=0.0027 Score=70.08 Aligned_cols=276 Identities=21% Similarity=0.317 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhc----chh--hhHhHHHHHHHHhhhhcccCCCCCCCCchhh
Q 001085 481 EQKIMDLYSEIEIYRRDKDELETQMEQLALDYEILKQENH----DIS--YKLEQSQLQEQLKMQYECSSIGNGSEPETQV 554 (1160)
Q Consensus 481 ~~KI~eL~~ele~y~~~~~eLe~k~eqL~~dye~LkQEN~----dis--~KLEqsqlqe~l~~~~ecSs~~~~~~le~~i 554 (1160)
++-|..|+.-+..|=..+.+|+..+..|...+..+..-.. ++. |.-|-.++..
T Consensus 3 K~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~--------------------- 61 (312)
T PF00038_consen 3 KEELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRR--------------------- 61 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHH---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHH---------------------
Confidence 3567888888888888888888888888766555544311 111 2222222222
Q ss_pred hhhHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHH
Q 001085 555 ESLENELKIKSKDLSDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKEL 634 (1160)
Q Consensus 555 esle~elk~~~~e~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~L 634 (1160)
.|..+-....+|+-+...-......|+...+........+..++..-++...+.-...-+|
T Consensus 62 -------------------~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~l 122 (312)
T PF00038_consen 62 -------------------QIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDL 122 (312)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------hhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHH
Confidence 2222222333333333333333333334344334444444444444455555566666678
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhH-----HHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 001085 635 EAYIKNLEEELEKQAQVYEADLEVVTRAKV-----EQE-QRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQMASSFDA 708 (1160)
Q Consensus 635 e~qv~sl~eel~~Qaq~f~~dl~a~~~~k~-----eqE-~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~qmsSt~ee 708 (1160)
+++|.+|.++|.-.-..+..++..+..... +-. -+......+|+.+|-.+...+.....++..
T Consensus 123 e~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~----------- 191 (312)
T PF00038_consen 123 ENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEE----------- 191 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhh-----------
Confidence 888888888888777777777766554331 111 111122345677776666555555544332
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhh
Q 001085 709 NEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDE 788 (1160)
Q Consensus 709 nE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~ 788 (1160)
.+.. -+.+++.+...-...+..+.+++..++. +|+.|..+|+........+-..|...-.++......-.
T Consensus 192 ---~y~~---k~~~l~~~~~~~~~~~~~~~~E~~~~r~----~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~ 261 (312)
T PF00038_consen 192 ---WYQS---KLEELRQQSEKSSEELESAKEELKELRR----QIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQ 261 (312)
T ss_dssp ---HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hccc---ccccccccccccccccchhHhHHHHHHh----hhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 1111 2233444444444455555555544444 55555555555444444444444444444444444444
Q ss_pred HhhhHHHHHHHHHHHhhhhhhhhhhhhhH
Q 001085 789 EDSGALSLEIQQLKADTEKLMMDNKSLSE 817 (1160)
Q Consensus 789 ~~~~~~~~eiq~l~~~~~~l~~e~~~l~e 817 (1160)
..+..+..+|..++.++.....++..|+.
T Consensus 262 ~~i~~le~el~~l~~~~~~~~~ey~~Ll~ 290 (312)
T PF00038_consen 262 AEIAELEEELAELREEMARQLREYQELLD 290 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666665554
No 26
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.40 E-value=0.027 Score=73.54 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=20.1
Q ss_pred hHHHHHHHhhhhhHHHHHHhhhHHHHHHHHhhhhc
Q 001085 397 NLRLQLQKTQESNAELILAVQDLDEMLEQKNREIS 431 (1160)
Q Consensus 397 NL~LQLqKTQESN~ELvlaVqDLEEmLEQk~~EIs 431 (1160)
.++-+|...++.=..|-..++|++...+.....+.
T Consensus 356 ~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~ 390 (1201)
T PF12128_consen 356 EWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLE 390 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555666667777766665554443
No 27
>PRK01156 chromosome segregation protein; Provisional
Probab=98.36 E-value=0.024 Score=71.30 Aligned_cols=59 Identities=19% Similarity=0.195 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 001085 878 EDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNS 936 (1160)
Q Consensus 878 kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~ 936 (1160)
.+..+..+..+..++..++.++..|+..+..=+.+.+.++.+|..++.++++....+..
T Consensus 669 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~ 727 (895)
T PRK01156 669 LKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLES 727 (895)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34555666667777777777777777777666677777777777777777655555443
No 28
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.28 E-value=0.037 Score=69.83 Aligned_cols=156 Identities=22% Similarity=0.317 Sum_probs=94.7
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHhhhhhHHHHHHhhhHHHHHHHHhhhhcccccccCcccchHHhhhhhcCCCCCchHhHH
Q 001085 383 EIRQELSYEKDLNANLRLQLQKTQESNAELILAVQDLDEMLEQKNREISNHSNKSGSYVNAKELRRNISKSQTDDDEDQK 462 (1160)
Q Consensus 383 ELk~EL~~EKelNaNL~LQLqKTQESN~ELvlaVqDLEEmLEQk~~EIs~Ls~~~~~~~n~~e~~~~l~~~etddde~q~ 462 (1160)
.|.-+|..-+.-+.-|+-+|..-=+-+.+|..-++||++-++..+-||.+.... ++.++ -+..
T Consensus 174 hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~e------a~ra~-----------~yrd 236 (1195)
T KOG4643|consen 174 HLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDE------AHRAD-----------RYRD 236 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhh-----------hhhh
Confidence 456677777777778888887666778888888888888888777776664321 11111 1223
Q ss_pred HHHHHHh--hccChhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhHhHHHHHHHHhhhhc
Q 001085 463 ALEELVK--EHRDVKETYLLEQKIMDLYSEIEIYRRDKDELETQMEQLALDYEILKQENHDISYKLEQSQLQEQLKMQYE 540 (1160)
Q Consensus 463 ~l~~l~k--e~~d~kE~~~L~~KI~eL~~ele~y~~~~~eLe~k~eqL~~dye~LkQEN~dis~KLEqsqlqe~l~~~~e 540 (1160)
+++.+.. +-.| ---+.+|+ +++-|+...++|++-+.-|.-..+-|+ .|||. ++.|++
T Consensus 237 eldalre~aer~d----~~ykerlm----Ds~fykdRveelkedN~vLleekeMLe------------eQLq~-lrarse 295 (1195)
T KOG4643|consen 237 ELDALREQAERPD----TTYKERLM----DSDFYKDRVEELKEDNRVLLEEKEMLE------------EQLQK-LRARSE 295 (1195)
T ss_pred HHHHHHHhhhcCC----Cccchhhh----hhHHHHHHHHHHHhhhHHHHHHHHHHH------------HHHHH-HHhccc
Confidence 3343333 2222 12234555 455566667888777665543344443 34555 567777
Q ss_pred ccCCCCCCCCchhhhhhHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 001085 541 CSSIGNGSEPETQVESLENELKIKSKDLSDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQI 610 (1160)
Q Consensus 541 cSs~~~~~~le~~iesle~elk~~~~e~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eel 610 (1160)
+-+ -.+.|..|+.++..|+.+..+. |+.++.|.+|.
T Consensus 296 ~~t---------------------------leseiiqlkqkl~dm~~erdtd-------r~kteeL~eEn 331 (1195)
T KOG4643|consen 296 GAT---------------------------LESEIIQLKQKLDDMRSERDTD-------RHKTEELHEEN 331 (1195)
T ss_pred cCC---------------------------hHHHHHHHHHHHHHHHHhhhhH-------HHHHHHHHHHH
Confidence 644 3446777788888888665554 77777777773
No 29
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.25 E-value=0.013 Score=70.50 Aligned_cols=96 Identities=23% Similarity=0.280 Sum_probs=54.8
Q ss_pred HHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 001085 828 ELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALV 907 (1160)
Q Consensus 828 ~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~ 907 (1160)
++++++.-+..++-.++...+|+--|...+...++-..-.+.|..+- =-|....++.+|-|=+.|...-.+|++.+
T Consensus 372 ~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~re---l~Elks~lrv~qkEKEql~~EkQeL~~yi- 447 (546)
T PF07888_consen 372 EIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRE---LQELKSSLRVAQKEKEQLQEEKQELLEYI- 447 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34444444455555666666666666666654443332233333222 23456777777777777777777777754
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhHHHH
Q 001085 908 EDESEKEKLRKQAFQLKGDLKKKEDAL 934 (1160)
Q Consensus 908 ~~e~eke~l~kqv~~lk~~l~kke~~~ 934 (1160)
+.|+..+-.+ .+-+.+++++
T Consensus 448 ------~~Le~r~~~~-~~~~~~~~~~ 467 (546)
T PF07888_consen 448 ------ERLEQRLDKV-ADEKWKEAAA 467 (546)
T ss_pred ------HHHHHHHHHh-hhhhhhcccc
Confidence 3455554444 5667777775
No 30
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=0.057 Score=69.14 Aligned_cols=167 Identities=26% Similarity=0.359 Sum_probs=97.1
Q ss_pred HHhHHHHHhhhhhhHhh-hHHH-HHHHHHHHhhhhhhhh-----hhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhh
Q 001085 775 NLSNQLEEQKKHDEEDS-GALS-LEIQQLKADTEKLMMD-----NKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRAN 847 (1160)
Q Consensus 775 ~~s~ql~~~~~~~~~~~-~~~~-~eiq~l~~~~~~l~~e-----~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~ 847 (1160)
.+.++++.+++.-++.. .+.. .+|..|...|..+..+ ...+-+-.++-+.+.+++..+.-.++-..-.+++.+
T Consensus 862 ~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q 941 (1293)
T KOG0996|consen 862 ELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQ 941 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHH
Confidence 34445555555544443 2222 5666666666555433 223333334445566666666666666667777777
Q ss_pred hhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHH-------HHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHH
Q 001085 848 RERDELESTIALVKKEAESSVEEVQRIQRIEDEKEA-------AVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQA 920 (1160)
Q Consensus 848 ~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~-------~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv 920 (1160)
....+|+..+-.+.++++..-+++..++.-..|-+. .+.-+++++..++.+|.++++++.+=..+.=.+.-++
T Consensus 942 ~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K~ 1021 (1293)
T KOG0996|consen 942 KKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIENKL 1021 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 778888888888888888887777777665555443 4455566666666666666665554444222244555
Q ss_pred HHhhhhhhhhHHHHHHHHHhh
Q 001085 921 FQLKGDLKKKEDALNSLEKKL 941 (1160)
Q Consensus 921 ~~lk~~l~kke~~~~~~ek~~ 941 (1160)
....+++..-+-...-+++.+
T Consensus 1022 e~~~~~l~e~~~~~~~~~k~~ 1042 (1293)
T KOG0996|consen 1022 EAINGELNEIESKIKQPEKEL 1042 (1293)
T ss_pred HHHHHHHHHHHhhhhhHHHhh
Confidence 555555555555555555443
No 31
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.20 E-value=0.0045 Score=68.30 Aligned_cols=125 Identities=22% Similarity=0.365 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 001085 633 ELEAYIKNLEEELEKQAQVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQMASSFDANEKV 712 (1160)
Q Consensus 633 ~Le~qv~sl~eel~~Qaq~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~qmsSt~eenE~~ 712 (1160)
+|..-+..+..+....+..+-.|+++....+++.=+.. .-.+..++..+..|+..+..++
T Consensus 166 dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~----------~~~~~~~~~~~~~E~~~~r~~~---------- 225 (312)
T PF00038_consen 166 DLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQ----------SEKSSEELESAKEELKELRRQI---------- 225 (312)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred cchhhhhhHHHHHHHHHhhhhhhhhhhccccccccccc----------ccccccccchhHhHHHHHHhhh----------
Confidence 47777788888888888888888888888877543332 2234555667777777766666
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhH
Q 001085 713 AMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSN 778 (1160)
Q Consensus 713 ~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ 778 (1160)
...-.++..|+..|..||..+......+..-...|...|..|-.+|......|..+..+.++.++
T Consensus 226 -~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~ 290 (312)
T PF00038_consen 226 -QSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLD 290 (312)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 33445888899999999999999999999999999999999999999999999988888776554
No 32
>PRK01156 chromosome segregation protein; Provisional
Probab=98.19 E-value=0.053 Score=68.28 Aligned_cols=30 Identities=10% Similarity=0.024 Sum_probs=12.2
Q ss_pred HHHHHhHHHHhhhhhhhHHHHHHHHHHHHh
Q 001085 894 LLKVQCHNLKQALVEDESEKEKLRKQAFQL 923 (1160)
Q Consensus 894 ~l~~q~~~lk~~l~~~e~eke~l~kqv~~l 923 (1160)
..+..+.+++.-+..-..+.++++.++..+
T Consensus 633 ~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l 662 (895)
T PRK01156 633 NKYNEIQENKILIEKLRGKIDNYKKQIAEI 662 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444333443444444444444433
No 33
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.18 E-value=0.021 Score=72.88 Aligned_cols=170 Identities=17% Similarity=0.232 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhh
Q 001085 709 NEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDE 788 (1160)
Q Consensus 709 nE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~ 788 (1160)
-|++--+|-.+..++-.....|++.+++++.+|.-+++.++.+-.++...+....+.+
T Consensus 431 ~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel---------------------- 488 (1293)
T KOG0996|consen 431 LEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKEL---------------------- 488 (1293)
T ss_pred HHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH----------------------
Confidence 3344444444444444444455555555555555555544444444444443333333
Q ss_pred HhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhH
Q 001085 789 EDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSV 868 (1160)
Q Consensus 789 ~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~ 868 (1160)
..|..++...++++.-...+...|... ++.....++.+|.++......+.....+.+.+...|..+|.|.....
T Consensus 489 ---~~~~~~~n~~~~e~~vaesel~~L~~~---~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~ 562 (1293)
T KOG0996|consen 489 ---MPLLKQVNEARSELDVAESELDILLSR---HETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKE 562 (1293)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 333333333333333333333333332 22223344445555555555555555555556666666665555555
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHH
Q 001085 869 EEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEK 913 (1160)
Q Consensus 869 ~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~ek 913 (1160)
.+|..++ ...++|++.+-.++....++|.+++..-+.-
T Consensus 563 k~l~~~~-------~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~ 600 (1293)
T KOG0996|consen 563 KELPKLR-------KEERNLKSQLNKLRQRVEEAKSSLSSSRSRN 600 (1293)
T ss_pred HhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 5555444 2334555666666666677777666554443
No 34
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.12 E-value=0.064 Score=67.79 Aligned_cols=137 Identities=21% Similarity=0.215 Sum_probs=87.1
Q ss_pred HhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhH
Q 001085 789 EDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSV 868 (1160)
Q Consensus 789 ~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~ 868 (1160)
+.++.+-.+.+.|+..-.+|+.|+..|.+.+......-.+..+.......+.-+......+-++|--.|--+++--..+.
T Consensus 422 eri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~ 501 (1195)
T KOG4643|consen 422 ERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRD 501 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444454444555555554444443333222222222222233333334444455555555666666677778
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhh
Q 001085 869 EEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKG 925 (1160)
Q Consensus 869 ~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~ 925 (1160)
.|++++-..+++-..-+.+....++.+..+|-.|-..++.-|.|...|-+||..|+-
T Consensus 502 ~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 502 LELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888999999999999999999999988876
No 35
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.08 E-value=0.061 Score=64.72 Aligned_cols=346 Identities=22% Similarity=0.300 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHH-----HHHHHHHHHHH
Q 001085 577 ELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKN-----LEEELEKQAQV 651 (1160)
Q Consensus 577 ~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~s-----l~eel~~Qaq~ 651 (1160)
.++.+....|.+--.=..++..-+.+++.|..+|++...+-+......-.+=.++.+++..+.. ...+|+.=-.+
T Consensus 45 ~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q 124 (522)
T PF05701_consen 45 KLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQ 124 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHH
Confidence 3333444444333333344556788899999999888877554433333333344556554444 34555544456
Q ss_pred HHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHH
Q 001085 652 YEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLE 731 (1160)
Q Consensus 652 f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LE 731 (1160)
+..++..|...+.| |.++|.+.+.+++---.=+.+ ...+.+....|.+.+-.--.|+..|..--....
T Consensus 125 ~~~~~~eL~~~k~E-----------L~~lr~e~~~~~~~k~~A~~~-aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~ 192 (522)
T PF05701_consen 125 YASAVAELDSVKQE-----------LEKLRQELASALDAKNAALKQ-AEEAVSAAEENEEKVEELSKEIIALKESLESAK 192 (522)
T ss_pred HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655544 677777777777644444444 344445555566655555556555555554444
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhh
Q 001085 732 EMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMD 811 (1160)
Q Consensus 732 e~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e 811 (1160)
.....|.++...+-.+.......+...|.-..+.++.|..++ ...+.| +......+..+..|++++...+.
T Consensus 193 ~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~-~~~k~L-------e~kL~~a~~~l~~Lq~El~~~~~- 263 (522)
T PF05701_consen 193 LAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEEL-EAAKDL-------ESKLAEASAELESLQAELEAAKE- 263 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-
Confidence 444555555444554555555555555544444444444444 222222 22345556777777777776665
Q ss_pred hhhhhH---HHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHH
Q 001085 812 NKSLSE---EAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELL 888 (1160)
Q Consensus 812 ~~~l~e---~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l 888 (1160)
..+.. .......+...+..++.-+.+....|++.+.+...|...+.+|+.+.++.-.++.+++.-...-...|..|
T Consensus 264 -~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L 342 (522)
T PF05701_consen 264 -SKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSL 342 (522)
T ss_pred -HHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhH
Confidence 22222 23445566677888889999999999999999999999999999999999999999999888888889999
Q ss_pred HHHHHHHHHHhHH--------------HHhhhhhhhHH-------HHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhc
Q 001085 889 KSELELLKVQCHN--------------LKQALVEDESE-------KEKLRKQAFQLKGDLKKKEDALNSLEKKLKDS 944 (1160)
Q Consensus 889 ~se~~~l~~q~~~--------------lk~~l~~~e~e-------ke~l~kqv~~lk~~l~kke~~~~~~ek~~~~s 944 (1160)
..++..++....- |-..|..=-.| .+..+..+..++.++..-...+..++.||...
T Consensus 343 ~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa 419 (522)
T PF05701_consen 343 EAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAA 419 (522)
T ss_pred HHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777766533 33333333233 33445566667777777777777777777655
No 36
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.08 E-value=7.3e-07 Score=110.97 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhh
Q 001085 1105 MLIELDSLKEKNQCMESELKDMQER 1129 (1160)
Q Consensus 1105 ~~~~~~~lk~~~~~~e~el~em~~r 1129 (1160)
+-.+|....+|+..++.+|.-|+.+
T Consensus 832 ~q~elee~~e~~~~~e~~l~~lr~~ 856 (859)
T PF01576_consen 832 LQRELEEAEERAEAAERELNKLRAK 856 (859)
T ss_dssp SSSHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3448888889999999999888754
No 37
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.04 E-value=0.088 Score=65.21 Aligned_cols=69 Identities=17% Similarity=0.300 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHH
Q 001085 577 ELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEEL 645 (1160)
Q Consensus 577 ~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel 645 (1160)
.|++-|.++++.+..-.-+.-++.+.+..|+.+|-+--.++-+-....-+.+--|.+++.|+..+..+.
T Consensus 124 ~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~ 192 (1265)
T KOG0976|consen 124 KLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEA 192 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHH
Confidence 445555666655555555555667777777777666666666666666666666777776666655443
No 38
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.97 E-value=4.5e-06 Score=102.09 Aligned_cols=137 Identities=26% Similarity=0.290 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhccccCcc-CcCccc-cccCC
Q 001085 884 AVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEKKLKDSNRRASV-SDGTRT-TLRNN 961 (1160)
Q Consensus 884 ~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~~~s~~~~~~-~~~t~~-~~~n~ 961 (1160)
....+..++..++.+...-..+++.-..+...|++.+..|..++.+-+..+..++.++.....++.. ...|+- .+++|
T Consensus 476 ~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~N 555 (722)
T PF05557_consen 476 RNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDN 555 (722)
T ss_dssp ------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-
T ss_pred cccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCC
Confidence 4445556666666676666665555555666699999999999999999999999888764433211 112222 23444
Q ss_pred CCCCCCC-ChhHHHhHHHHHHHhhhhhhhHH-------HHHhhcchhhHHHhh-hhhhHHHHHHHHHH
Q 001085 962 KSAPVSQ-GSKEIANLRERIKLLEGQIKSKE-------IALEASTNSFVEKEK-DLKNKIEELECRVE 1020 (1160)
Q Consensus 962 ~~~~~~~-~s~~~a~l~~~ik~~e~~ik~~~-------~a~~~s~~~~~~ke~-~l~~~i~e~~~~~~ 1020 (1160)
..+.+-. -...+..|+.-+..|-.+|+..+ .+.-+++-....+|. +|+..|+.++.|..
T Consensus 556 P~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~ 623 (722)
T PF05557_consen 556 PTSKAEQIKKSTLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQ 623 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 2222221 12334444444444433332222 111122222233332 67778887776655
No 39
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.87 E-value=0.13 Score=66.38 Aligned_cols=113 Identities=23% Similarity=0.240 Sum_probs=73.6
Q ss_pred HhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHh-------hhhhhhHHHHHHHHH
Q 001085 789 EDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRA-------NRERDELESTIALVK 861 (1160)
Q Consensus 789 ~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~-------~~e~~~l~~~~~~~k 861 (1160)
+.-..+..+.+++..+++.+.+|++.+ ++..+ .++|+ +.+.-|... ..-.-+++....+|+
T Consensus 667 ~~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~------e~~~~----e~~~~lseek~ar~k~e~~~~~i~~e~e~L~ 734 (1317)
T KOG0612|consen 667 ALEIKLERKLKMLQNELEQENAEHHRL--RLQDK------EAQMK----EIESKLSEEKSAREKAENLLLEIEAELEYLS 734 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhH------HHHHH----HHHHHhcccccHHHHHHHHHHHHHHHHHHHh
Confidence 444667778888888888888888877 22222 22222 222222211 122234556666777
Q ss_pred HHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHH
Q 001085 862 KEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEK 913 (1160)
Q Consensus 862 ~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~ek 913 (1160)
.-.-.+.+=++.+++.++-....+..|++.|+....+-.-++..|+-.+.+-
T Consensus 735 ~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~ 786 (1317)
T KOG0612|consen 735 NDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEV 786 (1317)
T ss_pred hhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhh
Confidence 6666666778888889999999999999999988888777777776444433
No 40
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.21 Score=62.02 Aligned_cols=130 Identities=22% Similarity=0.258 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHhHHHHhHHHHHHHHHHhhhhhhhHH--HHhccc
Q 001085 293 IEIEKLKSELVALARQADLSELELQTLRKQIVKESKRAQDLSREVISLKEEKDLLKLDCEKLKTFQKRMDEA--KVRNKL 370 (1160)
Q Consensus 293 ~~iEkLKsE~~sL~Rqad~s~lELQtLRKQi~kEsKrgqdLs~EVs~Lk~ERD~LK~E~EqLKs~~k~~~ea--~~~~rl 370 (1160)
.....|..+...|++-++..-..+-++--++......-..-.-++..+...+|.++-+++..+.....++.+ .....+
T Consensus 48 ~~~~~L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~ 127 (698)
T KOG0978|consen 48 VLFDELAEENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHL 127 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 345555555555555555555555555555555444444445556666666777777777655443322111 111122
Q ss_pred cccCCCch-----------HHHHHHHHHhhhhhhhhhhHHHHHHHhhhhhHHHHHHhhhHHHHH
Q 001085 371 HFQGGDPW-----------VLLEEIRQELSYEKDLNANLRLQLQKTQESNAELILAVQDLDEML 423 (1160)
Q Consensus 371 ~~e~~D~~-----------~~leELk~EL~~EKelNaNL~LQLqKTQESN~ELvlaVqDLEEmL 423 (1160)
+. +|++. .-++++++++.=-+.++.++..-|.+.|.-+.+++.-+.++..-|
T Consensus 128 ~t-~~~~~~~~~~~~t~~~t~~~~l~~~iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l 190 (698)
T KOG0978|consen 128 NT-YGNGNGSLSGTITVNSTELEELRDEIEELRELASTRMEELEKLQLYSDEILRQLDRFRVEL 190 (698)
T ss_pred CC-CCCcccccCcccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22221 457888888888888889998888888877777777666655544
No 41
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.78 E-value=0.059 Score=65.12 Aligned_cols=118 Identities=22% Similarity=0.297 Sum_probs=72.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHH
Q 001085 706 FDANEKVAMKALAEASELRMQKRHL-----EEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQL 780 (1160)
Q Consensus 706 ~eenE~~~~~A~~E~seLr~~~~~L-----Ee~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql 780 (1160)
||.+=..+.+.+.-....+.++..- =...+.+.+|+..++. .|.+|..+|.-....--.+...|++.-.|+
T Consensus 258 ye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~----~i~~Lr~klselE~~n~~L~~~I~dL~~ql 333 (546)
T KOG0977|consen 258 YEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRS----RISGLRAKLSELESRNSALEKRIEDLEYQL 333 (546)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHh----cccchhhhhccccccChhHHHHHHHHHhhh
Confidence 4444444444444444444433221 1123446677777776 666666666665555555666666667777
Q ss_pred HHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHH
Q 001085 781 EEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELA 830 (1160)
Q Consensus 781 ~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~ 830 (1160)
..-++.-+...++...+|..++.+...|+.|...|.+ -|-.|..|++
T Consensus 334 ~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD---~ki~Ld~EI~ 380 (546)
T KOG0977|consen 334 DEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLD---TKISLDAEIA 380 (546)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc---hHhHHHhHHH
Confidence 7777777777788888888888888877777776665 3455555543
No 42
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.60 E-value=0.15 Score=61.87 Aligned_cols=338 Identities=20% Similarity=0.241 Sum_probs=204.1
Q ss_pred CCCchhhhhhHHHHHhhhhhchhhHH----HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHH-HHHHHHHHHHHHHHhh
Q 001085 548 SEPETQVESLENELKIKSKDLSDSLA----IINELETHIEGLASELKKQSREFSNFQATIKEL-ESQIEALGNELKEQSK 622 (1160)
Q Consensus 548 ~~le~~iesle~elk~~~~e~sdSl~----~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L-~eelq~s~~eLK~q~~ 622 (1160)
-.+-+++.-..-..|..+.+|.|-|+ .|-.||+|=..|+.++..-...|...-+-+... +.|+-..-.-|....+
T Consensus 27 ~~~as~ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~ 106 (546)
T KOG0977|consen 27 SNAASPIRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETAR 106 (546)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHH
Confidence 44557888888888999999999998 567899999999999998888888665555443 4446666666666667
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001085 623 GYSDSLATIKELEAYIKNLEEELEKQAQVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQM 702 (1160)
Q Consensus 623 e~S~~l~~i~~Le~qv~sl~eel~~Qaq~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~qm 702 (1160)
+-..+..-|.-|+.++..+...+.++.+....+-..+ -.+.-++..++..+ ..+
T Consensus 107 ~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~----~~~~~~l~~leAe~------------------~~~---- 160 (546)
T KOG0977|consen 107 ERAKLEIEITKLREELKELRKKLEKAEKERRGAREKL----DDYLSRLSELEAEI------------------NTL---- 160 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHH----HHHhhhhhhhhhHH------------------HHH----
Confidence 7777777777777777777766666644333322111 11222222211111 110
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh---hhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHH
Q 001085 703 ASSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALS---LRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQ 779 (1160)
Q Consensus 703 sSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~---~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~q 779 (1160)
=.-+..-..|+..|+.+|..|...|+.+..+|.. ++-++..+++.|...|+++...-++-+.++-.+-..
T Consensus 161 -------krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~r 233 (546)
T KOG0977|consen 161 -------KRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARR 233 (546)
T ss_pred -------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 0112223447788999999999999998877765 889999999999999999886666555554432211
Q ss_pred HHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHH
Q 001085 780 LEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIAL 859 (1160)
Q Consensus 780 l~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~ 859 (1160)
.--....+.+.+.|..-|+.++|+-+..+.-+..=.+. -.+..+..++++..- .. .....
T Consensus 234 -d~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~-----~Y~~kI~~i~~~~~~-------~~-------~~~~~ 293 (546)
T KOG0977|consen 234 -DTTADNREYFKNELALAIREIRAQYEAISRQNRKDIES-----WYKRKIQEIRTSAER-------AN-------VEQNY 293 (546)
T ss_pred -cccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHhhhcc-------cc-------chhHH
Confidence 11144555666777777777777776555433221111 111122222221111 11 11222
Q ss_pred HHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHH----hhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 001085 860 VKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLK----QALVEDESEKEKLRKQAFQLKGDLKKKEDALN 935 (1160)
Q Consensus 860 ~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk----~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~ 935 (1160)
++.|.......+..|+.-=.+-|.+-..|-..|+.|+.|.++-+ ..|...+.+..+||.+.-+|-.+|.+-=|...
T Consensus 294 ~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki 373 (546)
T KOG0977|consen 294 AREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKI 373 (546)
T ss_pred HHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHh
Confidence 33333333333333333333444445555555566666555544 35677788899999999999999888777665
Q ss_pred HHH
Q 001085 936 SLE 938 (1160)
Q Consensus 936 ~~e 938 (1160)
++-
T Consensus 374 ~Ld 376 (546)
T KOG0977|consen 374 SLD 376 (546)
T ss_pred HHH
Confidence 554
No 43
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.54 E-value=0.47 Score=58.68 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhhhhhhccccccc
Q 001085 1106 LIELDSLKEKNQCMESELKDMQERYSEISLKFAEV 1140 (1160)
Q Consensus 1106 ~~~~~~lk~~~~~~e~el~em~~ryse~sl~faev 1140 (1160)
..|+..||..+.+||..-.+|.+=|.-=++-|-.|
T Consensus 599 ~~ev~qlk~ev~s~ekr~~rlk~vF~~ki~eFr~a 633 (716)
T KOG4593|consen 599 SKEVAQLKKEVESAEKRNQRLKEVFASKIQEFRDA 633 (716)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34889999999999998888888877766666443
No 44
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.51 E-value=0.46 Score=57.79 Aligned_cols=78 Identities=19% Similarity=0.242 Sum_probs=52.0
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHh--hhhhhHHHhHHHHHHHHHHHH
Q 001085 565 SKDLSDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQS--KGYSDSLATIKELEAYIKNLE 642 (1160)
Q Consensus 565 ~~e~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~--~e~S~~l~~i~~Le~qv~sl~ 642 (1160)
.|++-...-.+..|+.++..|+.-|+..=.-+..++.++-....+|+.--.+++.+. ..+-+.-..|..|..++....
T Consensus 190 ~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~ 269 (569)
T PRK04778 190 SGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENL 269 (569)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHH
Confidence 344445555777788888888888887777777888888777777777777777763 333334555555555555533
No 45
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.45 E-value=0.6 Score=57.75 Aligned_cols=243 Identities=24% Similarity=0.325 Sum_probs=141.4
Q ss_pred CchhhhhhHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHH----------
Q 001085 550 PETQVESLENELKIKSKDLSDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKE---------- 619 (1160)
Q Consensus 550 le~~iesle~elk~~~~e~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~---------- 619 (1160)
-|-+|.-|--.+...-.++.|-...+.+-..+|..|++..+.|--.++..+...++|..+|-.....|.+
T Consensus 238 kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~ 317 (786)
T PF05483_consen 238 KEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEE 317 (786)
T ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444557777778888888888888888888877877777777777665322222221
Q ss_pred ------------------HhhhhhhHHHhH----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHH
Q 001085 620 ------------------QSKGYSDSLATI----KELEAYIKNLEEELEKQAQVYEADLEVVTRAKVEQEQRAIQAEETL 677 (1160)
Q Consensus 620 ------------------q~~e~S~~l~~i----~~Le~qv~sl~eel~~Qaq~f~~dl~a~~~~k~eqE~rai~aEeaL 677 (1160)
+-.+++.+-... .++++-|++|.+=|....|++..-=+.+.....+-..|....|++-
T Consensus 318 ~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmt 397 (786)
T PF05483_consen 318 DLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMT 397 (786)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHH
Confidence 122233322222 2467777777777777776666555555666666777776666664
Q ss_pred HHHHhhhhhHHH--HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHhhhhhhHHHH
Q 001085 678 RKTRLKNANTAE--RLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQK---RHLEEMINKASEEALSLRDDYETKL 752 (1160)
Q Consensus 678 rktR~~na~~~e--~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~---~~LEe~L~~a~~el~~~~~~~e~Ki 752 (1160)
. +.|...++ -|.+.+ .|-+.|-..+ ..+.+.|+.+..+|--+=--.+.+|
T Consensus 398 k---~k~~ke~eleeL~~~L----------------------~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev 452 (786)
T PF05483_consen 398 K---QKNNKEVELEELKKIL----------------------AEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEV 452 (786)
T ss_pred H---HhhhhHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3 33433333 222222 2233322222 3556777777777766555566788
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhh---hHhhhHHHHHHHHHHHhhhhhhhhhhhhhH
Q 001085 753 CQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHD---EEDSGALSLEIQQLKADTEKLMMDNKSLSE 817 (1160)
Q Consensus 753 ~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~---~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e 817 (1160)
+.|..+|..-+..-...+..+...-.+|+.-+-.. ....+.++.+...+--+...+..+...+.+
T Consensus 453 ~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qe 520 (786)
T PF05483_consen 453 HDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQE 520 (786)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 99988888766555555555555555555422111 233466777777776666666655554433
No 46
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.44 E-value=0.06 Score=66.94 Aligned_cols=144 Identities=24% Similarity=0.324 Sum_probs=88.2
Q ss_pred HHHHHHHhhHHHHHHhhHHHHHHHHHH-----------HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 001085 647 KQAQVYEADLEVVTRAKVEQEQRAIQA-----------EETLRKTRLKNANTAERLQEEFRRLSVQMASSFDANEKVAMK 715 (1160)
Q Consensus 647 ~Qaq~f~~dl~a~~~~k~eqE~rai~a-----------EeaLrktR~~na~~~e~LqeE~~~LS~qmsSt~eenE~~~~~ 715 (1160)
.+-+.++.-|.+-.+++.+.|.+|-++ -+++|..|. .|+.|+++|-.++-+ .|-..+.
T Consensus 502 ~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~-------~lE~E~~~lr~elk~----kee~~~~ 570 (697)
T PF09726_consen 502 RQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRR-------QLESELKKLRRELKQ----KEEQIRE 570 (697)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHH-------HHHHHHHHHHHHHHH----HHHHHHH
Confidence 344457777777777777666666554 234443332 344445554444422 5666677
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHH
Q 001085 716 ALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALS 795 (1160)
Q Consensus 716 A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~ 795 (1160)
+..|+.+||...+.-+......-..|+.|++ |-..|.+.|.--|.-.--|..-|-++..|++-+..+ +..=-
T Consensus 571 ~e~~~~~lr~~~~e~~~~~e~L~~aL~amqd----k~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~----~~~~d 642 (697)
T PF09726_consen 571 LESELQELRKYEKESEKDTEVLMSALSAMQD----KNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQ----LRKKD 642 (697)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 7778888887632222223333344677888 888888888888887777888888887777554432 23334
Q ss_pred HHHHHHHHhhhhhh
Q 001085 796 LEIQQLKADTEKLM 809 (1160)
Q Consensus 796 ~eiq~l~~~~~~l~ 809 (1160)
.||-.||++|..++
T Consensus 643 ~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 643 KEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHH
Confidence 67777888777665
No 47
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.42 E-value=0.039 Score=65.35 Aligned_cols=136 Identities=19% Similarity=0.266 Sum_probs=80.2
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHH--HHHH-H
Q 001085 798 IQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVE--EVQR-I 874 (1160)
Q Consensus 798 iq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~--el~~-~ 874 (1160)
++.++++++.+..+...+..+ .+.++.++..++..+..++..|.....++..+...++.+++.....-. .... -
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~---l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~ 291 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAE---IEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCT 291 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 444555555555444444332 344555666666677777777777777777777777777766555421 0000 1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhh---hhhHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 001085 875 QRIEDEKEAAVELLKSELELLKVQCHNLKQALV---EDESEKEKLRKQAFQLKGDLKKKEDALNSL 937 (1160)
Q Consensus 875 ~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~---~~e~eke~l~kqv~~lk~~l~kke~~~~~~ 937 (1160)
+.+.+. +..+..|...+..|+.|++.+...+. ....+..++...+..++..+....+.+.+.
T Consensus 292 ~~~~~~-~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~ 356 (562)
T PHA02562 292 QQISEG-PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITL 356 (562)
T ss_pred CcCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123344 67777777777777777777777776 444445555666666666666666555543
No 48
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.33 E-value=0.94 Score=57.42 Aligned_cols=173 Identities=25% Similarity=0.356 Sum_probs=97.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhh---hH-HHHHHHhHH
Q 001085 751 KLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSL---SE-EAEQKESLR 826 (1160)
Q Consensus 751 Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l---~e-~~e~~e~~~ 826 (1160)
+..-|.+.+...+.-++.|..+|++.-.+.++. .....++-+-|..+|+..+.+|+.-.-.| +- .---...+.
T Consensus 326 RaesLQ~eve~lkEr~deletdlEILKaEmeek---G~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~ 402 (1243)
T KOG0971|consen 326 RAESLQQEVEALKERVDELETDLEILKAEMEEK---GSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQ 402 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 444455555555555555555555555444433 22222333333333333333333222211 11 111223456
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhh--HHH-HHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 001085 827 VELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESS--VEE-VQRIQRIEDEKEAAVELLKSELELLKVQCHNLK 903 (1160)
Q Consensus 827 ~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~--~~e-l~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk 903 (1160)
.++|..+.-+.|..-.-.+..++.+.++++|+-+|.++.-+ .+| +..+...|=+-|..|..|.-+|+.|.+ ..++-
T Consensus 403 kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEa-lee~~ 481 (1243)
T KOG0971|consen 403 KELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEA-LEEMN 481 (1243)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHH-HHHHH
Confidence 67777777777777777777888889999999999887665 233 345566666778888888877755543 12333
Q ss_pred hhhhhh--hHHHHHHHHHHHHhhhhhh
Q 001085 904 QALVED--ESEKEKLRKQAFQLKGDLK 928 (1160)
Q Consensus 904 ~~l~~~--e~eke~l~kqv~~lk~~l~ 928 (1160)
.-|.+. |.|+ .||+++.+++|..+
T Consensus 482 EQL~Esn~ele~-DLreEld~~~g~~k 507 (1243)
T KOG0971|consen 482 EQLQESNRELEL-DLREELDMAKGARK 507 (1243)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHhhHHH
Confidence 333332 3333 38888888887654
No 49
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.31 E-value=0.00038 Score=85.64 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhhhhhhccccccc
Q 001085 1106 LIELDSLKEKNQCMESELKDMQERYSEISLKFAEV 1140 (1160)
Q Consensus 1106 ~~~~~~lk~~~~~~e~el~em~~ryse~sl~faev 1140 (1160)
-.|+..|+..-...+....+|.+=|..=|.-|-+|
T Consensus 605 ~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~a 639 (722)
T PF05557_consen 605 EKEIAELKAELASAEKRNQRLKEVFKAKSQEFREA 639 (722)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566666666667777777777788777777654
No 50
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.30 E-value=1.5 Score=59.10 Aligned_cols=121 Identities=20% Similarity=0.289 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHH------------HHHHHHH----------HHHhhhhcchhhhHhHHHHHH
Q 001085 476 ETYLLEQKIMDLYSEIEIYRRDKDELETQM------------EQLALDY----------EILKQENHDISYKLEQSQLQE 533 (1160)
Q Consensus 476 E~~~L~~KI~eL~~ele~y~~~~~eLe~k~------------eqL~~dy----------e~LkQEN~dis~KLEqsqlqe 533 (1160)
++..|++++.++...++.|++....+-.-. .++...+ .-+...-.+|--+|++.+-.+
T Consensus 457 qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~q~~~~ 536 (1486)
T PRK04863 457 ELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAE 536 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777766666544333100 1122222 223333334444455444444
Q ss_pred HHhhhhcccCCCCCCCCchhhhhhHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001085 534 QLKMQYECSSIGNGSEPETQVESLENELKIKSKDLSDSLAIINELETHIEGLASELKKQSREFS 597 (1160)
Q Consensus 534 ~l~~~~ecSs~~~~~~le~~iesle~elk~~~~e~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~ 597 (1160)
++--+ =|--.+.+-+-+..++.+-.+.+....++++..+.+.+--+.++...++|..++..+.
T Consensus 537 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~ 599 (1486)
T PRK04863 537 RLLAE-FCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLA 599 (1486)
T ss_pred HHHHH-HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44222 2221122222246777888888888888888888888888888888888888776665
No 51
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.30 E-value=0.88 Score=56.33 Aligned_cols=272 Identities=22% Similarity=0.303 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-hhhhhhHHHhHH-HHHHHHHHHHHHH---HHHHHH
Q 001085 577 ELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQ-SKGYSDSLATIK-ELEAYIKNLEEEL---EKQAQV 651 (1160)
Q Consensus 577 ~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q-~~e~S~~l~~i~-~Le~qv~sl~eel---~~Qaq~ 651 (1160)
.++.+|..|-+++.+-.-+-....+.+.+|+..|+++.+.+... ..+.+..-..+. .|++.+..|.+++ ..|.+.
T Consensus 26 ~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqa 105 (617)
T PF15070_consen 26 QWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQA 105 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666655555566667777777776655555444 222232222222 4666677676444 344444
Q ss_pred HHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHH
Q 001085 652 YEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLE 731 (1160)
Q Consensus 652 f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LE 731 (1160)
...+-..+...+.++++|....|..|+...- -..|..+|..+|.|-.. .+..|+.---+|..|-.-|+
T Consensus 106 qv~~ne~Ls~L~~EqEerL~ELE~~le~~~e--------~~~D~~kLLe~lqsdk~----t~SRAlsQN~eLK~QL~Elq 173 (617)
T PF15070_consen 106 QVENNEQLSRLNQEQEERLAELEEELERLQE--------QQEDRQKLLEQLQSDKA----TASRALSQNRELKEQLAELQ 173 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhhcccch----HHHHHHHhHHHHHHHHHHHH
Confidence 5567788888899999999999888875332 22566677777743322 23445555555555555555
Q ss_pred HHHHHH---HHHHHhhhhhhHHHHH-HHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHH---HHHHHHHHh
Q 001085 732 EMINKA---SEEALSLRDDYETKLC-QLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALS---LEIQQLKAD 804 (1160)
Q Consensus 732 e~L~~a---~~el~~~~~~~e~Ki~-~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~---~eiq~l~~~ 804 (1160)
..+-+. +.+|.+ .-+.+-.+. +|...|.-....+..|...+..|+.++.+++...+.+.+-+. ...|.|-.+
T Consensus 174 ~~Fv~ltne~~elt~-~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e 252 (617)
T PF15070_consen 174 DAFVKLTNENMELTS-ALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASE 252 (617)
T ss_pred HHHHHHHHhhhHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 533333 222222 111111222 344444434444444555555555566666655555443221 112333333
Q ss_pred hhhhhhhhh---hhhHHHHHHHh-HHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHH
Q 001085 805 TEKLMMDNK---SLSEEAEQKES-LRVELAQMKTTVKEYELLIQRANRERDELESTIALVK 861 (1160)
Q Consensus 805 ~~~l~~e~~---~l~e~~e~~e~-~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k 861 (1160)
.+.|-...- -|++++-+.+. -++.++..-+-+.++..-|...+.+-..|...++++-
T Consensus 253 ~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~ 313 (617)
T PF15070_consen 253 KEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMA 313 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Confidence 333332221 22333333221 1222333333444555555555666666666666544
No 52
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.25 E-value=6.8e-05 Score=91.90 Aligned_cols=78 Identities=29% Similarity=0.405 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHhhhhccccC-ccCcCccccccCCCCCCCCCChhHHHhHHHHHHHhhhhhhhHHHHH
Q 001085 916 LRKQAFQLKGDLKKKEDALNSLEKKLKDSNRRA-SVSDGTRTTLRNNKSAPVSQGSKEIANLRERIKLLEGQIKSKEIAL 994 (1160)
Q Consensus 916 l~kqv~~lk~~l~kke~~~~~~ek~~~~s~~~~-~~~~~t~~~~~n~~~~~~~~~s~~~a~l~~~ik~~e~~ik~~~~a~ 994 (1160)
+...|..|+..|.+|+..+.+++.+++..=-++ .|-. | -.++++ | ...|+..|+..+..-+..|+..|..+
T Consensus 574 ~~~ki~~Le~~L~~k~~e~~~~eer~k~~lekak~vi~-~-Ld~k~~---~---~~~e~~~L~~ql~e~~~~i~~lE~~~ 645 (713)
T PF05622_consen 574 LSQKIEELEEALQKKEEEMRAMEERYKKYLEKAKEVIK-T-LDPKQN---P---SSPEIQALKKQLQEKDRRIESLEKEL 645 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHhh-c-cChhcc---C---ChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466788999999999999999987765331111 0000 0 011111 1 45667677777666677777666666
Q ss_pred hhcchhh
Q 001085 995 EASTNSF 1001 (1160)
Q Consensus 995 ~~s~~~~ 1001 (1160)
+.+...+
T Consensus 646 e~~k~~~ 652 (713)
T PF05622_consen 646 EKSKQMR 652 (713)
T ss_dssp -------
T ss_pred hhhhhHH
Confidence 6554333
No 53
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.17 E-value=2 Score=57.95 Aligned_cols=104 Identities=22% Similarity=0.276 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHH
Q 001085 763 TDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELL 842 (1160)
Q Consensus 763 ~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~ 842 (1160)
....+++..+.+.....+...+..-.+....+..+.+.|...|..|..---.|..--+.-+.|+.-....-.+......+
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~~L~eq~g~~~~~~~~v~~~ 632 (1486)
T PRK04863 553 EDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEY 632 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHhhHHHHHHHHHhcchhhcCHHHHHHH
Confidence 56777788888888888888888888888899999999999999988777666665444445554433332222222222
Q ss_pred HH-------HhhhhhhhHHHHHHHHHHHHHh
Q 001085 843 IQ-------RANRERDELESTIALVKKEAES 866 (1160)
Q Consensus 843 ~~-------~~~~e~~~l~~~~~~~k~eae~ 866 (1160)
.| ..+.+++.+...+..+..+.+.
T Consensus 633 mq~~~~~~~~~~~~~~~~~~~~~~L~~~i~~ 663 (1486)
T PRK04863 633 MQQLLERERELTVERDELAARKQALDEEIER 663 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 2455666666666666666654
No 54
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.09 E-value=1.6 Score=55.48 Aligned_cols=166 Identities=20% Similarity=0.252 Sum_probs=106.7
Q ss_pred HHhhhhhhhhhHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 001085 700 VQMASSFDANEKVAMK---ALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNL 776 (1160)
Q Consensus 700 ~qmsSt~eenE~~~~~---A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~ 776 (1160)
..|+-+-|.=|-+|.+ |..=+.-|.+..-.+-|.+..-.-+|..++.+-+.|=-+-.+.-..--+++|+--.+|.++
T Consensus 304 ~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKda 383 (1243)
T KOG0971|consen 304 EEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDA 383 (1243)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHH
Confidence 3455555555666654 2222344444445556666666667777777666652222233333456777777888888
Q ss_pred hHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHH
Q 001085 777 SNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELEST 856 (1160)
Q Consensus 777 s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~ 856 (1160)
.=.|.++.-++...+.-+..+..+++.+++.|..-...|+.++++-|..-.+|..--.+..-+|+.+...+...-+|+.+
T Consensus 384 lVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEek 463 (1243)
T KOG0971|consen 384 LVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEK 463 (1243)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHH
Confidence 88888888888888888888888888888888888888888888888777776533333333455555555555667777
Q ss_pred HHHHHHHHH
Q 001085 857 IALVKKEAE 865 (1160)
Q Consensus 857 ~~~~k~eae 865 (1160)
+-+|..+..
T Consensus 464 VklLeetv~ 472 (1243)
T KOG0971|consen 464 VKLLEETVG 472 (1243)
T ss_pred HHHHHHHHH
Confidence 777665543
No 55
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.08 E-value=0.16 Score=60.19 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhc
Q 001085 885 VELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEKKLKDS 944 (1160)
Q Consensus 885 ~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~~~s 944 (1160)
+..++..+..++......+..+..-..+...++..|..|.......++.+..++.++.+-
T Consensus 332 ~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~ 391 (562)
T PHA02562 332 FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKI 391 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Confidence 444455555666666666666666566666666666666666666666666666665444
No 56
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.07 E-value=1.6 Score=54.93 Aligned_cols=60 Identities=13% Similarity=0.252 Sum_probs=42.8
Q ss_pred hhhhhhHHHHHHHHHH-------HHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 001085 847 NRERDELESTIALVKK-------EAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQAL 906 (1160)
Q Consensus 847 ~~e~~~l~~~~~~~k~-------eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l 906 (1160)
..+...|...+..+.+ .......||..++..-++....++..|.|+-++......|=|-+
T Consensus 397 ~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHV 463 (717)
T PF09730_consen 397 ESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHV 463 (717)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444 44555677888888888889999999999999888888877754
No 57
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.32 Score=60.81 Aligned_cols=289 Identities=26% Similarity=0.296 Sum_probs=132.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHH
Q 001085 702 MASSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLE 781 (1160)
Q Consensus 702 msSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~ 781 (1160)
..--|-++|.+..+|+.=-.+.-.++...++.+ +++..+.- |+.++...++.-+.+..||..++...-.+|+
T Consensus 620 f~kL~kele~~i~k~ls~~~eee~~~~~~~k~~----e~l~~~~~----kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~ 691 (970)
T KOG0946|consen 620 FKKLFKELEGLIAKLLSSKTEEEEQTQLAEKYH----EELDDIQQ----KYKGLIRELDYQIENLKQMEKELQVENEELE 691 (970)
T ss_pred HHHHHHHHHHHHHHHhcCCCccchhhHHHHHHH----HHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 333455566666666654444444443333322 23333333 5566666666666666666666555444443
Q ss_pred HhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHH---HhhhhhhhHHHHHH
Q 001085 782 EQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQ---RANRERDELESTIA 858 (1160)
Q Consensus 782 ~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~---~~~~e~~~l~~~~~ 858 (1160)
.-=...-..+..+..+...||.++.+.+.-+..+.+-++--...-.++... ..|++.+.+ ..+.+++.-...+-
T Consensus 692 ~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~---~~e~k~l~~~q~~l~~~L~k~~~~~e 768 (970)
T KOG0946|consen 692 EEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAA---LSENKKLENDQELLTKELNKKNADIE 768 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 222222222233344444444444444433333333222221111122111 122222221 22222222233333
Q ss_pred HHHHHHHhhH-------------HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhh
Q 001085 859 LVKKEAESSV-------------EEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKG 925 (1160)
Q Consensus 859 ~~k~eae~~~-------------~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~ 925 (1160)
+.|+.+.... +-+.-+.+--.|+.+.+..+++++..++.|...+-+.-+.---..+-+..+---+-+
T Consensus 769 s~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~ 848 (970)
T KOG0946|consen 769 SFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLAN 848 (970)
T ss_pred HHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhh
Confidence 3333332110 001111111233445555566666666666666555555555555555555555555
Q ss_pred hhhhhHHHHHHHHHhhhhccccCccCcCccccccCCCCCCCCCChhHHHhHHHHHHHhhhhhhhH--HHHHhhcchhh--
Q 001085 926 DLKKKEDALNSLEKKLKDSNRRASVSDGTRTTLRNNKSAPVSQGSKEIANLRERIKLLEGQIKSK--EIALEASTNSF-- 1001 (1160)
Q Consensus 926 ~l~kke~~~~~~ek~~~~s~~~~~~~~~t~~~~~n~~~~~~~~~s~~~a~l~~~ik~~e~~ik~~--~~a~~~s~~~~-- 1001 (1160)
++++-+..+.++-.+++ .++..++.+-|+|+.|+.|.-+- -.|+.++-++-
T Consensus 849 e~~~ieq~ls~l~~~~k-------------------------~~~nli~~ltEk~~sl~~qadse~l~ka~~~~k~~nl~ 903 (970)
T KOG0946|consen 849 ELKLIEQKLSNLQEKIK-------------------------FGNNLIKELTEKISSLEAQADSETLSKALKTVKSENLS 903 (970)
T ss_pred HHHHHHHHHHHHHHHhh-------------------------hhhhHHHHHhhhhhhHHHhhcchHHHHHHHHhhcccch
Confidence 55555555444433322 25567788888988888654322 12333332211
Q ss_pred -----HHHhh--------hhhhHHHHHHHHHHhhhccc
Q 001085 1002 -----VEKEK--------DLKNKIEELECRVEELNQNS 1026 (1160)
Q Consensus 1002 -----~~ke~--------~l~~~i~e~~~~~~e~n~~~ 1026 (1160)
+.+|+ |-.++|.-|...++.+|+..
T Consensus 904 lki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q~~ 941 (970)
T KOG0946|consen 904 LKIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQPV 941 (970)
T ss_pred hcccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCCCh
Confidence 12222 45678888888888888864
No 58
>PRK11637 AmiB activator; Provisional
Probab=96.93 E-value=0.85 Score=53.47 Aligned_cols=53 Identities=21% Similarity=0.235 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHH
Q 001085 850 RDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNL 902 (1160)
Q Consensus 850 ~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~l 902 (1160)
+.+|+...+.+...-.....+...|...+.++...+..|.+++.....+...|
T Consensus 186 k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l 238 (428)
T PRK11637 186 KAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSEL 238 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444555555555555444444444444
No 59
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.92 E-value=0.46 Score=57.73 Aligned_cols=242 Identities=28% Similarity=0.280 Sum_probs=126.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHhhhhhhHHHHH
Q 001085 677 LRKTRLKNANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLEEMINKAS---EEALSLRDDYETKLC 753 (1160)
Q Consensus 677 LrktR~~na~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~---~el~~~~~~~e~Ki~ 753 (1160)
|++...--+.+-++|+..-+.|=.++. +.|+. ..-. --||..++.|+--+++.. .++.+-+..+.-+|.
T Consensus 226 l~~~~~~i~~~ie~l~~~n~~l~e~i~----e~ek~--~~~~--eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~ 297 (581)
T KOG0995|consen 226 LEKYFTSIANEIEDLKKTNRELEEMIN----EREKD--PGKE--ESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLE 297 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcC--cchH--HHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 444333345556677766666655552 22211 1111 124444444444444333 334444556677777
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHH-HHhHHHHHHHh
Q 001085 754 QLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQ-KESLRVELAQM 832 (1160)
Q Consensus 754 ~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~-~e~~~~~~~~~ 832 (1160)
+|...+..+..++|.+..+.+..-++++.| ..-.+...-+..|.+.|..++.++..+...|+.++=. +-..+.-.
T Consensus 298 ~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q-~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f--- 373 (581)
T KOG0995|consen 298 MLKSEIEEKEEEIEKLQKENDELKKQIELQ-GISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFF--- 373 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---
Confidence 777777777777777777777777777766 5556666677777777777777777777777765411 11111111
Q ss_pred hhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHH-HHHHHhhhhhHHHHHHHHHHHHHH-HHHHHhHHHHhhhhhhh
Q 001085 833 KTTVKEYELLIQRANRERDELESTIALVKKEAESSVE-EVQRIQRIEDEKEAAVELLKSELE-LLKVQCHNLKQALVEDE 910 (1160)
Q Consensus 833 k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~-el~~~~~~kdeke~~~~~l~se~~-~l~~q~~~lk~~l~~~e 910 (1160)
++.+..+.+-+.-+. .|.+. -|+.+.. +++-. .--.....+++-|. .|+.-|++.+-.+.+.+
T Consensus 374 ----~~le~~~~~~~~l~~----~i~l~--~~~~~~n~~~~pe-----~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~ 438 (581)
T KOG0995|consen 374 ----KELEKKFIDLNSLIR----RIKLG--IAENSKNLERNPE-----RAATNGVDLKSYVKPLLKELLDEISEELHEAE 438 (581)
T ss_pred ----HHHHHHHHHHHHHHH----HHHHH--HHHHhccCCcCCc-----cCccccccchhHhHHHHHHHHHHHHHHHHHHH
Confidence 222222222111111 11111 1111111 00000 00011112222222 34555677777788888
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhcc
Q 001085 911 SEKEKLRKQAFQLKGDLKKKEDALNSLEKKLKDSN 945 (1160)
Q Consensus 911 ~eke~l~kqv~~lk~~l~kke~~~~~~ek~~~~s~ 945 (1160)
.++..|+..+.++...+.-+-+.+-.++-++...+
T Consensus 439 ~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~ 473 (581)
T KOG0995|consen 439 NELETLQEHFSNKASTIEEKIQILGEIELELKKAE 473 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887777777776666666665543
No 60
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=1.4 Score=55.31 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=28.2
Q ss_pred eeeeeccccccccceEEEEeecCCCCccccccccccccCccccCccchhhhhccccC-Cccccc
Q 001085 21 QFHATQVAQLGENALMISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREP-KSGKIS 83 (1160)
Q Consensus 21 qFhATQVPq~gwDkLfVSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~-kTkk~~ 83 (1160)
|||+.+ |..| ||-+|..+--+ .++| -|-||+--||-+-|. +-|+.|
T Consensus 21 qF~~Lk-p~~g-------fitg~qArnff------lqS~---LP~~VLaqIWALsDldkDGrmd 67 (1118)
T KOG1029|consen 21 QFGQLK-PGQG-------FITGDQARNFF------LQSG---LPTPVLAQIWALSDLDKDGRMD 67 (1118)
T ss_pred HHhccC-CCCC-------ccchHhhhhhH------HhcC---CChHHHHHHHHhhhcCccccch
Confidence 777777 5444 44444333222 3443 588999999988886 556654
No 61
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.90 E-value=0.00023 Score=87.44 Aligned_cols=89 Identities=25% Similarity=0.318 Sum_probs=0.0
Q ss_pred hhHHHHHHHhHHHHhHHHHHHHHHHhhhhhhhHHHHhccccccCCCchHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhhH
Q 001085 331 QDLSREVISLKEEKDLLKLDCEKLKTFQKRMDEAKVRNKLHFQGGDPWVLLEEIRQELSYEKDLNANLRLQLQKTQESNA 410 (1160)
Q Consensus 331 qdLs~EVs~Lk~ERD~LK~E~EqLKs~~k~~~ea~~~~rl~~e~~D~~~~leELk~EL~~EKelNaNL~LQLqKTQESN~ 410 (1160)
.+|..+|..|..|++.|..|.+.|+......+. .. .++.. +...-.+.|+.|+..+++-+.
T Consensus 196 ~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~---~~------~~~~~----------~~~~~~~~l~~ql~~L~~el~ 256 (713)
T PF05622_consen 196 HELEKQISDLQEEKESLQSENEELQERLSQLEG---SS------EEPSQ----------HLSVELADLRAQLRRLREELE 256 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCC---CC------CCcch----------HHHHHHHHHHHHHHHHHHHHH
Confidence 478888899999999999998887665443220 00 01100 000112356667777777777
Q ss_pred HHHHHhhhHHHHHHHHhhhhcccccccC
Q 001085 411 ELILAVQDLDEMLEQKNREISNHSNKSG 438 (1160)
Q Consensus 411 ELvlaVqDLEEmLEQk~~EIs~Ls~~~~ 438 (1160)
++--+..|++.-++....+|..|-..+.
T Consensus 257 ~~e~~~~d~~~~~e~le~ei~~L~q~~~ 284 (713)
T PF05622_consen 257 RLEEQRDDLKIELEELEKEIDELRQENE 284 (713)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777777777766655443
No 62
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.89 E-value=2.5 Score=54.23 Aligned_cols=39 Identities=33% Similarity=0.354 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHh
Q 001085 885 VELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQL 923 (1160)
Q Consensus 885 ~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~l 923 (1160)
+..+..++..++.+.+++...+..-+..-+++..++.++
T Consensus 690 ~~~~~~el~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 728 (908)
T COG0419 690 LEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAEL 728 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888887777777333334444444333
No 63
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.48 Score=59.40 Aligned_cols=212 Identities=21% Similarity=0.269 Sum_probs=116.6
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHH---HHHHHHHHhhhhHHHHHHHHHHHHHh
Q 001085 701 QMASSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETK---LCQLSNQLNVKTDQIEQMLKEINNLS 777 (1160)
Q Consensus 701 qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~K---i~~L~~qL~~~~~~~e~m~~el~~~s 777 (1160)
|-+-++..+.+-.-.|+.|...|-.+.-.|.+.|.+-++.+.+++..-+.- ..-+...+.....-+| +..++..++
T Consensus 727 q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~E-l~~~l~e~~ 805 (970)
T KOG0946|consen 727 QGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIE-LLKNLSEES 805 (970)
T ss_pred hHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHH-HHHhhhhhh
Confidence 444567777788888888998888888888888888888888776622210 0011111111111111 222233333
Q ss_pred HHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhh----hhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhH
Q 001085 778 NQLEEQKKHDEEDSGALSLEIQQLKADTEKLM----MDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDEL 853 (1160)
Q Consensus 778 ~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~----~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l 853 (1160)
.++ ..+..+++.++.+++.+. +-...+.....+.-++..++..++.-+.++..-++-++-.+.++
T Consensus 806 ~~l-----------~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~l 874 (970)
T KOG0946|consen 806 TRL-----------QELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKEL 874 (970)
T ss_pred hHH-----------HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 333 334445555555544443 33345555555666777777777777777777778888888888
Q ss_pred HHHHHHHHHHHH--hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhH
Q 001085 854 ESTIALVKKEAE--SSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKE 931 (1160)
Q Consensus 854 ~~~~~~~k~eae--~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke 931 (1160)
-.++.+++.+|. ++-.+|...+. .+|+-++-..+.+..++--.+ ..-.+.+.+||..+++-+
T Consensus 875 tEk~~sl~~qadse~l~ka~~~~k~---------~nl~lki~s~kqeqee~~v~~-------~~~~~~i~alk~~l~dL~ 938 (970)
T KOG0946|consen 875 TEKISSLEAQADSETLSKALKTVKS---------ENLSLKIVSNKQEQEELLVLL-------ADQKEKIQALKEALEDLN 938 (970)
T ss_pred hhhhhhHHHhhcchHHHHHHHHhhc---------ccchhcccchhhhHHHHHHHH-------hhHHHHHHHHHHHHHHhC
Confidence 888888875444 33455544443 334444444444444443222 222333444555444444
Q ss_pred HHHHHHHHh
Q 001085 932 DALNSLEKK 940 (1160)
Q Consensus 932 ~~~~~~ek~ 940 (1160)
.-...+|..
T Consensus 939 q~~eeie~e 947 (970)
T KOG0946|consen 939 QPVEEIEDE 947 (970)
T ss_pred CChhhHHhh
Confidence 444444444
No 64
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.86 E-value=1.2 Score=55.00 Aligned_cols=199 Identities=24% Similarity=0.355 Sum_probs=120.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhHhHHHHHHHHhhhhcccCCCCCCCCchh
Q 001085 474 VKETYLLEQKIMDLYSEIEIYRRDKDELETQMEQLALDYEILKQENHDISYKLEQSQLQEQLKMQYECSSIGNGSEPETQ 553 (1160)
Q Consensus 474 ~kE~~~L~~KI~eL~~ele~y~~~~~eLe~k~eqL~~dye~LkQEN~dis~KLEqsqlqe~l~~~~ecSs~~~~~~le~~ 553 (1160)
..|+..|+..|++|..+|+.+..+...|...+.++....+..+.++.. ++.++++
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~---------le~~~~l---------------- 381 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEE---------LEEELKL---------------- 381 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH----------------
Confidence 357888888888888888888888888887777776555444444222 2222211
Q ss_pred hhhhHHHHHhhhhh-chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHH
Q 001085 554 VESLENELKIKSKD-LSDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIK 632 (1160)
Q Consensus 554 iesle~elk~~~~e-~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~ 632 (1160)
+...-+ +.|.-.+|..|+.-|..-..-|..=...+-..|. .|++++..+......+..+++.-+..|+
T Consensus 382 --------~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~---pL~~e~r~lk~~~~~~~~e~~~~~~~ik 450 (594)
T PF05667_consen 382 --------KKKTVELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRA---PLIEEYRRLKEKASNRESESKQKLQEIK 450 (594)
T ss_pred --------HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 111111 3344445555555444444333333333333333 5677777777777777888888889999
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHHHHHhh
Q 001085 633 ELEAYIKNLEEELEKQAQ---VYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNAN------TAERLQEEFRRLSVQMA 703 (1160)
Q Consensus 633 ~Le~qv~sl~eel~~Qaq---~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~------~~e~LqeE~~~LS~qms 703 (1160)
.+..+++.+..++..+.+ .+..+++.|... +----.--|.-+....+|..+.= ..-.||+|+..|+-++-
T Consensus 451 ~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~-~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 451 ELREEIKEIEEEIRQKEELYKQLVKELEKLPKD-VNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLD 529 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888776 455566555544 11111222334446666665541 22279999999999997
Q ss_pred hhhhhh
Q 001085 704 SSFDAN 709 (1160)
Q Consensus 704 St~een 709 (1160)
-||..-
T Consensus 530 RtF~v~ 535 (594)
T PF05667_consen 530 RTFTVT 535 (594)
T ss_pred hHHHHH
Confidence 777643
No 65
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.83 E-value=0.22 Score=56.74 Aligned_cols=143 Identities=21% Similarity=0.290 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001085 572 LAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQAQV 651 (1160)
Q Consensus 572 l~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~~Qaq~ 651 (1160)
...+..|+.+++.||+|-..=+.++..+.++...++++=|. + -.+|+..+.+...||.+|.++|+.+...
T Consensus 159 ~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqq---------L-v~dcv~QL~~An~qia~LseELa~k~Ee 228 (306)
T PF04849_consen 159 CIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQ---------L-VLDCVKQLSEANQQIASLSEELARKTEE 228 (306)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHH---------H-HHHHHHHhhhcchhHHHHHHHHHHHHHH
Confidence 34789999999999999888777777777776666655333 3 4578999999999999999999988754
Q ss_pred H---HhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHH
Q 001085 652 Y---EADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKR 728 (1160)
Q Consensus 652 f---~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~ 728 (1160)
+ ..++..+...-++.++|. ..++...|.|+ .++..+-+.+-.++. |+.+|+....
T Consensus 229 ~~rQQEEIt~LlsqivdlQ~r~-----------k~~~~EnEeL~-------q~L~~ske~Q~~L~a----EL~elqdkY~ 286 (306)
T PF04849_consen 229 NRRQQEEITSLLSQIVDLQQRC-----------KQLAAENEELQ-------QHLQASKESQRQLQA----ELQELQDKYA 286 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHhhhHHHHH-------HHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 4 345555555555555554 34444445444 555556666777754 6899999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 001085 729 HLEEMINKASEEALSLRD 746 (1160)
Q Consensus 729 ~LEe~L~~a~~el~~~~~ 746 (1160)
-.-+||+.|.++|+.+|.
T Consensus 287 E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 287 ECMAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 999999999999998875
No 66
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.80 E-value=2.8 Score=53.72 Aligned_cols=55 Identities=27% Similarity=0.358 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhH-HHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhh
Q 001085 885 VELLKSELELLKVQCH-NLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEKKL 941 (1160)
Q Consensus 885 ~~~l~se~~~l~~q~~-~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~ 941 (1160)
+..+...++.+..+.. .+.........+. ....+.+++.++......+...-+++
T Consensus 656 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~el~~~~~~l~~~~~~~ 711 (908)
T COG0419 656 LEELEEKVEELEAEIRRELQRIENEEQLEE--KLEELEQLEEELEQLREELEELLKKL 711 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666 3333333333322 22226666666666666655554443
No 67
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.79 E-value=3.3 Score=54.27 Aligned_cols=65 Identities=28% Similarity=0.286 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHhHHHHhHHHHHHHHHHhh
Q 001085 293 IEIEKLKSELVALAR-QADLSELELQTLRKQIVKESKRAQDLSREVISLKEEKDLLKLDCEKLKTF 357 (1160)
Q Consensus 293 ~~iEkLKsE~~sL~R-qad~s~lELQtLRKQi~kEsKrgqdLs~EVs~Lk~ERD~LK~E~EqLKs~ 357 (1160)
.+|++|+.+...|.| +--....+.--.-.++..+-..-++|+++|..++.|-+.+++...++...
T Consensus 472 e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~ 537 (1317)
T KOG0612|consen 472 ETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADS 537 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888886 22223333333334555666666777777777777766665555554433
No 68
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.73 E-value=3.5 Score=53.77 Aligned_cols=134 Identities=18% Similarity=0.184 Sum_probs=72.1
Q ss_pred CCchhhhhhHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 001085 549 EPETQVESLENELKIKSKDLSDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSL 628 (1160)
Q Consensus 549 ~le~~iesle~elk~~~~e~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l 628 (1160)
+..++|-+-.+|.+.-++-+.+-+....+.+..-++..+ .-..-+..+++-+.+|+++..+++.=-..-....
T Consensus 1419 ~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~-------~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp 1491 (1758)
T KOG0994|consen 1419 DADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALE-------QANASRSQMEESNRELRNLIQQVRDFLTQPDADP 1491 (1758)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 334555555555555544444444444444444433331 1225566777778888888888776655556677
Q ss_pred HhHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001085 629 ATIKELEAYIKNLEEEL-EKQAQVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRR 697 (1160)
Q Consensus 629 ~~i~~Le~qv~sl~eel-~~Qaq~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~ 697 (1160)
.+|+++-..|..|+=-+ ..|.+-+-.++ .+-=.+....++-|.+|+-..+ -|++||.+-++
T Consensus 1492 ~si~~vA~~vL~l~lp~tpeqi~~L~~~I-------~e~v~sL~nVd~IL~~T~~di~-ra~~L~s~A~~ 1553 (1758)
T KOG0994|consen 1492 DSIEEVAEEVLALELPLTPEQIQQLTGEI-------QERVASLPNVDAILSRTKGDIA-RAENLQSEAER 1553 (1758)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHH-------HHHHHhcccHHHHHHhhhhhHH-HHHHHHHHHHH
Confidence 88888888887776111 11122222222 1111222334445666654443 46778877766
No 69
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=96.55 E-value=1.4 Score=47.98 Aligned_cols=169 Identities=21% Similarity=0.302 Sum_probs=110.7
Q ss_pred HHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 001085 611 EALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQAQVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAER 690 (1160)
Q Consensus 611 q~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~~Qaq~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e~ 690 (1160)
+.+..........+..+..-|.+++.-|..|-.+...+......++..+...+-..-.-....|.++. -
T Consensus 26 ~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfs-----------d 94 (207)
T PF05010_consen 26 QELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFS-----------D 94 (207)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHH-----------H
Confidence 33334444445666667777777777777777776666666666665555444433332322222222 3
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHH-HHHH-------HhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh
Q 001085 691 LQEEFRRLSVQMASSFDANEKVAMKALAEA-SELR-------MQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVK 762 (1160)
Q Consensus 691 LqeE~~~LS~qmsSt~eenE~~~~~A~~E~-seLr-------~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~ 762 (1160)
|-.=|.+ ..+|...|-.||-...+.+.|. ..++ +=+++-++.|..||++|..++..+..-+..|..+|...
T Consensus 95 l~~ryek-~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~ 173 (207)
T PF05010_consen 95 LHKRYEK-QKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKE 173 (207)
T ss_pred HHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4444555 5677888888998888888662 2232 33478899999999999999999999999999888666
Q ss_pred hHHHHHHHHHHHHHhHHHHHhhhhhhHhh
Q 001085 763 TDQIEQMLKEINNLSNQLEEQKKHDEEDS 791 (1160)
Q Consensus 763 ~~~~e~m~~el~~~s~ql~~~~~~~~~~~ 791 (1160)
.-.+..+-..|+.+.++.+.+-+-=++.|
T Consensus 174 e~~~~SLe~~LeQK~kEn~ELtkICDeLI 202 (207)
T PF05010_consen 174 EMKVQSLEESLEQKTKENEELTKICDELI 202 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666667777777666655444444
No 70
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.45 E-value=4.3 Score=51.30 Aligned_cols=142 Identities=15% Similarity=0.248 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhh
Q 001085 610 IEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQ---AQVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNAN 686 (1160)
Q Consensus 610 lq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~~Q---aq~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~ 686 (1160)
+||+...|..-..+-+..+.++.+++.++..-..++..| .-++.+.+.+|.+.+...+....... ..+.++.
T Consensus 267 iqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~-----~~~~~s~ 341 (717)
T PF09730_consen 267 IQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDS-----EKERDSH 341 (717)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhc-----ccccccc
Confidence 688888888888888999999999999998888777755 66777888888875554444332111 1111111
Q ss_pred H-HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhH
Q 001085 687 T-AERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTD 764 (1160)
Q Consensus 687 ~-~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~ 764 (1160)
. +.-.+-++.- ++--|.-|..|+.||..|+..-+.|.+.+..+......-+..++..++.|..++....+
T Consensus 342 ~d~~~ye~Di~~--------~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek 412 (717)
T PF09730_consen 342 EDGDYYEVDING--------LEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEK 412 (717)
T ss_pred cccchhhhcccc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 0011111111 11145677889999999988888888887777666655666667777777777766555
No 71
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.45 E-value=4.9 Score=51.98 Aligned_cols=33 Identities=21% Similarity=0.124 Sum_probs=21.5
Q ss_pred eeccccccccceEEEEeecCCCCccccccccccccCccc
Q 001085 24 ATQVAQLGENALMISVVPLDVGKPTVRLEKAAIEDGCCR 62 (1160)
Q Consensus 24 ATQVPq~gwDkLfVSiVp~DtGKtTaKteKAaVrnG~C~ 62 (1160)
||.+--.|||..|=-|. +=. =|+|+++.|++|-
T Consensus 15 a~rTvI~~fDp~FNAIT-GlN-----GSGKSNILDsICF 47 (1174)
T KOG0933|consen 15 ATRTVISGFDPQFNAIT-GLN-----GSGKSNILDSICF 47 (1174)
T ss_pred eeeeeccCCCcccchhh-cCC-----CCCchHHHHHHHH
Confidence 34444458999887664 222 3678888888884
No 72
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.39 E-value=5.2 Score=51.64 Aligned_cols=71 Identities=24% Similarity=0.361 Sum_probs=47.1
Q ss_pred HHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHH
Q 001085 769 MLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELL 842 (1160)
Q Consensus 769 m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~ 842 (1160)
++-.++.+.+|+-+.-..-+...++|-.++..|+.++-.++.+...+.+-++++.. +|+.+++++...+..
T Consensus 693 ~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~---~Le~i~~~l~~~~~~ 763 (1200)
T KOG0964|consen 693 EIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGK---ELEEIKTSLHKLESQ 763 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHH---HHHHHHHHHHHHHHH
Confidence 33344455555555555666677888888888888888888888888777766655 566666655544433
No 73
>PRK11637 AmiB activator; Provisional
Probab=96.36 E-value=3.2 Score=48.82 Aligned_cols=68 Identities=12% Similarity=0.268 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHH
Q 001085 578 LETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEEL 645 (1160)
Q Consensus 578 Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel 645 (1160)
++.++..++.+++........++..+..+..++..+..+|..-...+...-..|..++.++..++.+|
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI 112 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASI 112 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444433333334444444444444333
No 74
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.32 E-value=4.7 Score=50.42 Aligned_cols=378 Identities=21% Similarity=0.256 Sum_probs=183.6
Q ss_pred hhhcchhhhHhHH-HHHHHHhhhhcccCCCCCCCCchhhhhhHHHHHhhhhhch---hhHHHHHHHHHHHHHHHHHHHHh
Q 001085 517 QENHDISYKLEQS-QLQEQLKMQYECSSIGNGSEPETQVESLENELKIKSKDLS---DSLAIINELETHIEGLASELKKQ 592 (1160)
Q Consensus 517 QEN~dis~KLEqs-qlqe~l~~~~ecSs~~~~~~le~~iesle~elk~~~~e~s---dSl~~I~~Le~qi~~LE~Ele~Q 592 (1160)
|.|-+..|+|.-+ |++..-++...|-. +++.++..+.....++. ++..++.-|+.+.++|+..+-
T Consensus 224 qq~a~~~~ql~~~~ele~i~~~~~dqlq---------el~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~-- 292 (716)
T KOG4593|consen 224 QQNAELEQQLSLSEELEAINKNMKDQLQ---------ELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLG-- 292 (716)
T ss_pred HHHhhHHHHHHhhhHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH--
Confidence 4455566666555 66665555555544 45555555555555544 677788888888888875442
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHH
Q 001085 593 SREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQAQVYEADLEVVTRAKVEQEQRAIQ 672 (1160)
Q Consensus 593 ~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~~Qaq~f~~dl~a~~~~k~eqE~rai~ 672 (1160)
.|-+++++...|+.+-..+..+|-+... +-..+..+...+..+..+..+..+-+
T Consensus 293 --~~~~l~~~~~~LELeN~~l~tkL~rwE~-~~~~~~~~~~~~~~~~~~~~e~s~~~----------------------- 346 (716)
T KOG4593|consen 293 --RLEKLQSTLLGLELENEDLLTKLQRWER-ADQEMGSLRTPEDLMEKLVNEQSRNA----------------------- 346 (716)
T ss_pred --HHHHHHHHHhhHHHHHHHHHHHHHHHHH-HhhhhhccCCHHHHHHHHHHHHHHHh-----------------------
Confidence 3445666666666555555555443321 11111111111111111111111111
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh---hhh---
Q 001085 673 AEETLRKTRLKNANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALS---LRD--- 746 (1160)
Q Consensus 673 aEeaLrktR~~na~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~---~~~--- 746 (1160)
+| .++..++..--.=.++..... -+..+-++.--.+...+|..+-+|...+++.--.+.. +..
T Consensus 347 ---~l----~~~~~t~~s~~~~~~r~~q~l----ke~~k~~~~ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~ 415 (716)
T KOG4593|consen 347 ---NL----KNKNSTVTSPARGLERARQLL----KEELKQVAGITEEETKLKELHETLARRLQKRALLLTQERDLNRAIL 415 (716)
T ss_pred ---hh----ccccccccCcccchHHHHHHH----HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 222222221000001101110 1122223333345556666666666555554322222 111
Q ss_pred ---hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHH
Q 001085 747 ---DYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKE 823 (1160)
Q Consensus 747 ---~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e 823 (1160)
..+-.|..-..++-....+++.|+...+..+-..++. ..+...+|+.-+..++++.++...|-.++...+
T Consensus 416 ~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s-------~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~ 488 (716)
T KOG4593|consen 416 GSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEAS-------MEELYREITGQKKRLEKLEHELKDLQSQLSSRE 488 (716)
T ss_pred hccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233555556677677888888998888888887776 566777888888888888877776666554443
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 001085 824 SLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLK 903 (1160)
Q Consensus 824 ~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk 903 (1160)
. .+-..-.++.-+...|+...++-.....|=-+++ -......|+-..+.-+ +-.|.
T Consensus 489 q-----------------~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr-----~~~e~~~l~gd~~~~~--~rVl~ 544 (716)
T KOG4593|consen 489 Q-----------------SLLFQREESELLREKIEQYLKELELLEEENDRLR-----AQLERRLLQGDYEENI--TRVLH 544 (716)
T ss_pred H-----------------HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhhhhhc--cceee
Confidence 3 2222222333334445555555555555544444 1122233333322111 11121
Q ss_pred hhhhh-------hhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhccccCccCcCccccccCCCCCCCCCChhHHHhH
Q 001085 904 QALVE-------DESEKEKLRKQAFQLKGDLKKKEDALNSLEKKLKDSNRRASVSDGTRTTLRNNKSAPVSQGSKEIANL 976 (1160)
Q Consensus 904 ~~l~~-------~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~~~s~~~~~~~~~t~~~~~n~~~~~~~~~s~~~a~l 976 (1160)
++... ...--+.|+.-+..||+-|+..++. ..++-||+... .+.+.+|+|+|.|
T Consensus 545 ~~~npt~~~~~~~k~~~e~LqaE~~~lk~~l~~le~~-------------~~~~~d~~i~~------~s~~~~~~ev~ql 605 (716)
T KOG4593|consen 545 MSTNPTSKARQIKKNRLEELQAELERLKERLTALEGD-------------KMQFRDGEIAV------HSLLAFSKEVAQL 605 (716)
T ss_pred ecCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------CCcccchhhHH------hhhhcchHHHHHH
Confidence 21111 1111233444444444433333322 22334444442 2445679999999
Q ss_pred HHHHHHhhhhhhhHHH
Q 001085 977 RERIKLLEGQIKSKEI 992 (1160)
Q Consensus 977 ~~~ik~~e~~ik~~~~ 992 (1160)
+...-..|+-+.-.-+
T Consensus 606 k~ev~s~ekr~~rlk~ 621 (716)
T KOG4593|consen 606 KKEVESAEKRNQRLKE 621 (716)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9998888887755433
No 75
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.19 E-value=4.8 Score=49.29 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=22.9
Q ss_pred HHhhHHH-HHHhhHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 001085 652 YEADLEV-VTRAKVEQEQRAIQAEETLRKTRLKNANTAE 689 (1160)
Q Consensus 652 f~~dl~a-~~~~k~eqE~rai~aEeaLrktR~~na~~~e 689 (1160)
+..+-+. ++..=-+=++.+..||+.+.+.|+..|..+-
T Consensus 69 w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~ 107 (569)
T PRK04778 69 WRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFRKAKHEI 107 (569)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3344444 2233334566777888888888887776554
No 76
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.10 E-value=6 Score=49.50 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 001085 856 TIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALN 935 (1160)
Q Consensus 856 ~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~ 935 (1160)
..+++..|+-....-|..=+.--.+-+.-...+|-|++.|+..|+-|-. +...+-++++-+.|-.-|+.++-+|.-.+.
T Consensus 705 q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~-e~r~~k~~~~q~lq~~ll~ve~~~k~~e~~ 783 (961)
T KOG4673|consen 705 QLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEV-EIRELKRKHKQELQEVLLHVELIQKDLERE 783 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHhhhC
Confidence 3456666655443333333332333344567788899999888887754 345566777888888888888888876654
No 77
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.09 E-value=5.5 Score=48.96 Aligned_cols=29 Identities=28% Similarity=0.411 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001085 480 LEQKIMDLYSEIEIYRRDKDELETQMEQL 508 (1160)
Q Consensus 480 L~~KI~eL~~ele~y~~~~~eLe~k~eqL 508 (1160)
|++-.+.++.+|+..++.+.+|++++.+.
T Consensus 226 l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ 254 (581)
T KOG0995|consen 226 LEKYFTSIANEIEDLKKTNRELEEMINER 254 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555667777777777777766543
No 78
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.08 E-value=6.1 Score=49.45 Aligned_cols=76 Identities=22% Similarity=0.262 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001085 662 AKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLEEMINKA 737 (1160)
Q Consensus 662 ~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a 737 (1160)
....|+.|..+.=+-|-.+-..--+.++-+-++++.-...|-++++..|--++-..-|+.....+-+.|+..+..-
T Consensus 524 ~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~L 599 (786)
T PF05483_consen 524 NSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNL 599 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3456666665444444433333345666788888888888989999988888888888888887777777665544
No 79
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.08 E-value=5.2 Score=50.51 Aligned_cols=48 Identities=25% Similarity=0.284 Sum_probs=33.6
Q ss_pred hhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001085 815 LSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKK 862 (1160)
Q Consensus 815 l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~ 862 (1160)
|+.+.-=|-.|=.-|-..|..++..+..+.....||.+|..+||-+..
T Consensus 610 LsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 610 LSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344433344444455666777788888888899999999999887764
No 80
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.07 E-value=5.5 Score=48.82 Aligned_cols=81 Identities=14% Similarity=0.212 Sum_probs=62.8
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHh--hhhhhHHHhHHHHHHHHHHHHH
Q 001085 566 KDLSDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQS--KGYSDSLATIKELEAYIKNLEE 643 (1160)
Q Consensus 566 ~e~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~--~e~S~~l~~i~~Le~qv~sl~e 643 (1160)
|++-..--.+..++.++..|+.-|+..-.-+..+++++-...++|+.--.+++.+. ..+-+....|+.++.++.....
T Consensus 187 GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~ 266 (560)
T PF06160_consen 187 GDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALA 266 (560)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34444555788899999999999999999999999999999999998888888883 4444567777777777776665
Q ss_pred HHH
Q 001085 644 ELE 646 (1160)
Q Consensus 644 el~ 646 (1160)
.|.
T Consensus 267 ~L~ 269 (560)
T PF06160_consen 267 LLK 269 (560)
T ss_pred HHH
Confidence 553
No 81
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.02 E-value=8.2 Score=50.39 Aligned_cols=173 Identities=20% Similarity=0.264 Sum_probs=120.5
Q ss_pred hhhhhhHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhH
Q 001085 552 TQVESLENELKIKSKDLSDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATI 631 (1160)
Q Consensus 552 ~~iesle~elk~~~~e~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i 631 (1160)
.++-..+..|-.++.++.+...-+...+.+|.+||..+.--..+....+-.+.-+.-|+|..+.++.+-.-+.|++...|
T Consensus 655 ~~L~~~k~rl~eel~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l 734 (1141)
T KOG0018|consen 655 DQLKEKKERLLEELKEIQKRRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKL 734 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHH
Confidence 45555667888888888886667888888888888877777777777777788888889999999998778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH--------HHHHHhhHHHHHHHHHHHHHHHHHHhhhhhH----------HHHHHH
Q 001085 632 KELEAYIKNLEEELEKQAQVYEADL--------EVVTRAKVEQEQRAIQAEETLRKTRLKNANT----------AERLQE 693 (1160)
Q Consensus 632 ~~Le~qv~sl~eel~~Qaq~f~~dl--------~a~~~~k~eqE~rai~aEeaLrktR~~na~~----------~e~Lqe 693 (1160)
...+..+..|++.+++=+.+.=.++ ..-.-....|+.-.-+.|+.=.+++++|.+. |+++++
T Consensus 735 ~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~ 814 (1141)
T KOG0018|consen 735 QNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQKDTQRRVERWER 814 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheecccHHHHHHHHHH
Confidence 8999999999999987665554444 1111111222222224444444555555543 446677
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 001085 694 EFRRLSVQMASSFDANEKVAMKALAEASELRM 725 (1160)
Q Consensus 694 E~~~LS~qmsSt~eenE~~~~~A~~E~seLr~ 725 (1160)
.+..+-.++-+.- .+|..+.+.+.|+.+|-.
T Consensus 815 ~v~~~~~~~~~~~-~~e~~~~k~i~e~~~~e~ 845 (1141)
T KOG0018|consen 815 SVEDLEKEIEGLK-KDEEAAEKIIAEIEELEK 845 (1141)
T ss_pred HHHHHHHhHHhhH-HHHHHHHHHHhhHHHHHH
Confidence 7777666665543 377888888888866655
No 82
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.00 E-value=5.9 Score=48.59 Aligned_cols=250 Identities=16% Similarity=0.295 Sum_probs=130.6
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHH-------HHHHHhhhhhHHHHHHHHHH
Q 001085 624 YSDSLATIKELEAYIKNLEEELEKQAQVYEADLEVVTRAKVEQEQRAIQAEET-------LRKTRLKNANTAERLQEEFR 696 (1160)
Q Consensus 624 ~S~~l~~i~~Le~qv~sl~eel~~Qaq~f~~dl~a~~~~k~eqE~rai~aEea-------LrktR~~na~~~e~LqeE~~ 696 (1160)
|..+-..+..++..+..+++++. .+...|+.+.....++..+.....+. |-..|+..-.+++.|.+.+.
T Consensus 96 f~ka~~~i~~~~~~l~~~e~~i~----~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~ 171 (560)
T PF06160_consen 96 FKKAKQAIKEIEEQLDEIEEDIK----EILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLE 171 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHH
Confidence 33333344444444433333332 34444444444444444444333333 33344556666777777776
Q ss_pred HHHHHhhhhhhhhhHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhH-------
Q 001085 697 RLSVQMASSFDANEKV-----AMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTD------- 764 (1160)
Q Consensus 697 ~LS~qmsSt~eenE~~-----~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~------- 764 (1160)
.|-. .|+.=+.+ +.+|-..+..++.....|+..+..+=.=+..++..+-..|.+|..-..-+..
T Consensus 172 ~ie~----~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~ 247 (560)
T PF06160_consen 172 NIEE----EFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEH 247 (560)
T ss_pred HHHH----HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCC
Confidence 6433 34444444 4567777888888888888888888777777777666666666544333222
Q ss_pred -----HHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHH
Q 001085 765 -----QIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEY 839 (1160)
Q Consensus 765 -----~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~ 839 (1160)
.++++...++...+.|.++ ++...+..++.+..+++.|-+.++..-..+....
T Consensus 248 ~~i~~~i~~i~~~l~~~~~~L~~l-------------~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~--------- 305 (560)
T PF06160_consen 248 LDIEEEIEQIEEQLEEALALLKNL-------------ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVE--------- 305 (560)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 1222222222222222111 2222222223333333333333333333222221
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhH
Q 001085 840 ELLIQRANRERDELESTIALVKKEAESSVEEVQRIQR---IEDEKEAAVELLKSELELLKVQCHNLKQALVEDES 911 (1160)
Q Consensus 840 ~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~---~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~ 911 (1160)
.....+...|.-+++.......|+.+++. +.+......+.+..++..+..+|..+...+.....
T Consensus 306 --------~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~ 372 (560)
T PF06160_consen 306 --------KNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQV 372 (560)
T ss_pred --------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 22344555666666777777777777765 56666667788888888888888877777665543
No 83
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.86 E-value=3 Score=44.93 Aligned_cols=147 Identities=19% Similarity=0.261 Sum_probs=102.3
Q ss_pred HHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHh-hhhhh
Q 001085 773 INNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRA-NRERD 851 (1160)
Q Consensus 773 l~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~-~~e~~ 851 (1160)
-+.+.+.++.....-...+.....||..|+..+.+....+..+..++-.++. ++..++..+....-++.++ -.+|+
T Consensus 45 q~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~---el~k~~~~l~~L~~L~~dknL~eRe 121 (194)
T PF15619_consen 45 QEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDE---ELLKTKDELKHLKKLSEDKNLAERE 121 (194)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHcCCchhHH
Confidence 3345556666666666677888889999999999888888888888766665 7777787888888777754 45699
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhH
Q 001085 852 ELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKE 931 (1160)
Q Consensus 852 ~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke 931 (1160)
+|..+++.+...++..-..+..|.. .|.-.-.+++.|...-+....+-..+...|...|..|..-|+-|+
T Consensus 122 eL~~kL~~~~~~l~~~~~ki~~Lek----------~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 122 ELQRKLSQLEQKLQEKEKKIQELEK----------QLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998888777655444443322 233333455666666666666666667777777777777777665
Q ss_pred H
Q 001085 932 D 932 (1160)
Q Consensus 932 ~ 932 (1160)
-
T Consensus 192 r 192 (194)
T PF15619_consen 192 R 192 (194)
T ss_pred h
Confidence 4
No 84
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.69 E-value=11 Score=49.18 Aligned_cols=139 Identities=22% Similarity=0.277 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhHHHHHHHhHHHHhHHHHHHHHHHhhhhhhhHHHHhccccc
Q 001085 294 EIEKLKSELVALARQADLSELELQTLRKQIVKES-KRAQDLSREVISLKEEKDLLKLDCEKLKTFQKRMDEAKVRNKLHF 372 (1160)
Q Consensus 294 ~iEkLKsE~~sL~Rqad~s~lELQtLRKQi~kEs-KrgqdLs~EVs~Lk~ERD~LK~E~EqLKs~~k~~~ea~~~~rl~~ 372 (1160)
.+++-+.-++.+.......+.|++.|-++|-+=. .|-.++..++.+|-.=-+++..++-+..++.....+ +.+..
T Consensus 252 ~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~--tl~~e-- 327 (1174)
T KOG0933|consen 252 EIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKKE--TLNGE-- 327 (1174)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHhhh--
Confidence 5566666667777777777777777777764422 233444445556666667777777666665554322 22211
Q ss_pred cCCCchHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhhHHHHHHhhhHHHHHHHHhhhhcccccccCccc
Q 001085 373 QGGDPWVLLEEIRQELSYEKDLNANLRLQLQKTQESNAELILAVQDLDEMLEQKNREISNHSNKSGSYV 441 (1160)
Q Consensus 373 e~~D~~~~leELk~EL~~EKelNaNL~LQLqKTQESN~ELvlaVqDLEEmLEQk~~EIs~Ls~~~~~~~ 441 (1160)
- .=+++++..+.=.+..=+-=+..+.++++.+..+.-+.+++..+++.....++.+.....+..
T Consensus 328 -~----~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~ 391 (1174)
T KOG0933|consen 328 -E----EKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNE 391 (1174)
T ss_pred -H----HHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc
Confidence 1 112222222222221112234567789999999999999999999999999999876555433
No 85
>PRK09039 hypothetical protein; Validated
Probab=95.69 E-value=0.38 Score=55.40 Aligned_cols=69 Identities=22% Similarity=0.242 Sum_probs=59.5
Q ss_pred HHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhH
Q 001085 863 EAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKE 931 (1160)
Q Consensus 863 eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke 931 (1160)
.+.....+|...+..=.|.-..|..|+.+|+.||.|...|...|..-+......+.|+..|+.+|...=
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445778888888888889999999999999999999999999999999999999999999887763
No 86
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.54 E-value=9.3 Score=47.47 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=16.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 001085 825 LRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKE 863 (1160)
Q Consensus 825 ~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~e 863 (1160)
+...+..+.+.+.+...-+.....++..+...+..++++
T Consensus 426 l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 464 (650)
T TIGR03185 426 LLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKT 464 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444333
No 87
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.47 E-value=6.5 Score=45.17 Aligned_cols=226 Identities=15% Similarity=0.207 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001085 574 IINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQAQVYE 653 (1160)
Q Consensus 574 ~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~~Qaq~f~ 653 (1160)
-++.|.++-..|-++|++..+.--.+-+.++|.-.-|-+...+..+-...-.+.=.+..--...-..|+..|....-.+-
T Consensus 64 QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lk 143 (305)
T PF14915_consen 64 QLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLK 143 (305)
T ss_pred hHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHH
Confidence 45555556666666666555555555555555555543333332221111111111111111111222233322222222
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHH
Q 001085 654 ADLEVVTRAKVEQEQRAIQAEETLRKTR---LKNANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHL 730 (1160)
Q Consensus 654 ~dl~a~~~~k~eqE~rai~aEeaLrktR---~~na~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~L 730 (1160)
+--+.+.+.=.+-+-+++..+.-|..|| -++++..|.+|+++..- .-|.+.+
T Consensus 144 d~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qt-------------------------q~q~KE~ 198 (305)
T PF14915_consen 144 DNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQT-------------------------QCQIKEI 198 (305)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHH
Confidence 2223333333334444444444444444 36777888888776653 3344566
Q ss_pred HHHHHHHHHHHHhhh---hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHh----hhHHHHHHHHHHH
Q 001085 731 EEMINKASEEALSLR---DDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEED----SGALSLEIQQLKA 803 (1160)
Q Consensus 731 Ee~L~~a~~el~~~~---~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~----~~~~~~eiq~l~~ 803 (1160)
|.|.+...+.+.--. .-.+-+|.+|...=-+...|++-.-.+-+++.+-+-+.+.+=... ..+-..+..+|+.
T Consensus 199 e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEE 278 (305)
T PF14915_consen 199 EHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEE 278 (305)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666655543311 111224444433332233333322222222222222222211111 1444566777888
Q ss_pred hhhhhhhhhhhhhHHHHHHHh
Q 001085 804 DTEKLMMDNKSLSEEAEQKES 824 (1160)
Q Consensus 804 ~~~~l~~e~~~l~e~~e~~e~ 824 (1160)
....|+.+.+.|-+++-+-|+
T Consensus 279 rNKeL~ne~n~LkEr~~qyEk 299 (305)
T PF14915_consen 279 RNKELINECNHLKERLYQYEK 299 (305)
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887665554
No 88
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.22 E-value=12 Score=46.81 Aligned_cols=89 Identities=26% Similarity=0.321 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHH
Q 001085 791 SGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEE 870 (1160)
Q Consensus 791 ~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~e 870 (1160)
..|+..-...|....-+++.++..|.+.++.-|.+-..|.--...|.+|=++.+..-+-
T Consensus 409 h~aLq~amekLq~~f~~~~~e~adl~e~~e~le~~~~ql~~et~ti~eyi~ly~~qr~~--------------------- 467 (617)
T PF15070_consen 409 HQALQEAMEKLQSRFMDLMEEKADLKERVEKLEHRFIQLSGETDTIGEYITLYQSQRAV--------------------- 467 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCccchhhhhccccccccc---------------------
Confidence 35666667788888888999999999887777766555543344556665554432211
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 001085 871 VQRIQRIEDEKEAAVELLKSELELLKVQCHNLK 903 (1160)
Q Consensus 871 l~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk 903 (1160)
++.--.|++..|..|--+-+.+|..+.+|+
T Consensus 468 ---~k~r~~e~~~~i~~l~~~~e~mk~kl~elq 497 (617)
T PF15070_consen 468 ---LKQRHQEKEEYISRLAQDREEMKVKLLELQ 497 (617)
T ss_pred ---cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111124666677777666666666555443
No 89
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.21 E-value=15 Score=47.84 Aligned_cols=225 Identities=22% Similarity=0.269 Sum_probs=126.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh-----------------hhhhHHHHHHHHHHHhhhhHHH
Q 001085 704 SSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALSL-----------------RDDYETKLCQLSNQLNVKTDQI 766 (1160)
Q Consensus 704 St~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~-----------------~~~~e~Ki~~L~~qL~~~~~~~ 766 (1160)
+-|.-.=+--..++.-+.+-|.+-+.|++.|..|.-+|+.+ +..+......|...++..+.++
T Consensus 657 gGy~D~krsrLe~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~ 736 (1200)
T KOG0964|consen 657 GGYEDQKRSRLELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEK 736 (1200)
T ss_pred ccchhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHH
Confidence 33444444455667777777777788888888877777664 2334455666667777777777
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhHhh---hHHHH----HH-H----HHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhh
Q 001085 767 EQMLKEINNLSNQLEEQKKHDEEDS---GALSL----EI-Q----QLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKT 834 (1160)
Q Consensus 767 e~m~~el~~~s~ql~~~~~~~~~~~---~~~~~----ei-q----~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~ 834 (1160)
-++-..+.-+.++|+.++-+..... +.|.. +. . .-...+.+|..+++.|+.+...--.=|.+++-.|+
T Consensus 737 ~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~ 816 (1200)
T KOG0964|consen 737 SRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKT 816 (1200)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666777777776665544333 11111 11 0 01122334444444444444332222333443333
Q ss_pred hhH------------HHHHHHHH-----hhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 001085 835 TVK------------EYELLIQR-----ANRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKV 897 (1160)
Q Consensus 835 ~~~------------~~~~~~~~-----~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~ 897 (1160)
+++ +.++-+.. +-.+.....+++-.+.+..+...-||..+...-|.+.+.+..++-+++.++.
T Consensus 817 ~le~~l~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~ 896 (1200)
T KOG0964|consen 817 ALEANLNTKLYKRVNELEQEIGDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKN 896 (1200)
T ss_pred HHHHHHHHHHHhhhhHHHHHhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 11111111 1112223334445556667777778888888888888999999999999988
Q ss_pred HhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHH
Q 001085 898 QCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDA 933 (1160)
Q Consensus 898 q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~ 933 (1160)
+-.+.+..+--| -+-|++.. .++-|.+|.++
T Consensus 897 lek~~~~~~~~d-Ke~Ek~~~----rk~~Ll~KreE 927 (1200)
T KOG0964|consen 897 LEKEKKDNINFD-KELEKLVR----RKHMLLKKREE 927 (1200)
T ss_pred HHHHHhhhhhhh-HHHHHHHH----HHHHHHHHHHH
Confidence 888887774333 55555543 34455555554
No 90
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=13 Score=46.92 Aligned_cols=145 Identities=18% Similarity=0.254 Sum_probs=83.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcchh-hhHhHHHHHHHHhhhhcccCCCCCCCCch
Q 001085 474 VKETYLLEQKIMDLYSEIEIYRRDKDELETQMEQLALDYEILKQENHDIS-YKLEQSQLQEQLKMQYECSSIGNGSEPET 552 (1160)
Q Consensus 474 ~kE~~~L~~KI~eL~~ele~y~~~~~eLe~k~eqL~~dye~LkQEN~dis-~KLEqsqlqe~l~~~~ecSs~~~~~~le~ 552 (1160)
..|++.|+..+..+..+++.++.+.+.+..+-......|.-+. =|..++ +. .+..++++++-
T Consensus 166 ~~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~-~NE~l~~~~-------------~~~~e~~~~~~--- 228 (698)
T KOG0978|consen 166 MEELEKLQLYSDEILRQLDRFRVELRSLKEKVRSETFELRCLQ-YNEELQRKT-------------MESDEAINSKK--- 228 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-hhhhccccc-------------chhhhhhccch---
Confidence 3478888888888888887777666665544444332222111 111111 11 01122222211
Q ss_pred hhhhhHHHHHhhhhhchhhHH-HHHHHHHHHHHHHHHHHHhhhh-hhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHh
Q 001085 553 QVESLENELKIKSKDLSDSLA-IINELETHIEGLASELKKQSRE-FSNFQATIKELESQIEALGNELKEQSKGYSDSLAT 630 (1160)
Q Consensus 553 ~iesle~elk~~~~e~sdSl~-~I~~Le~qi~~LE~Ele~Q~~~-f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~ 630 (1160)
..-+.+.+. ++++.+ +-+.+-|-.++..+ |....+.+..|+.-|+....-|+.+..++-+.=-.
T Consensus 229 ------------~~~lee~~~~~~~e~~--~l~~~~e~~~~~~~~~~~in~e~~~L~Ssl~e~~~~l~~~~~~~k~t~~~ 294 (698)
T KOG0978|consen 229 ------------VIKLEEKLAQCVKEYE--MLRKEFENNKSQNDLFSSINREMRHLISSLQEHEKLLKEYERELKDTESD 294 (698)
T ss_pred ------------HHHHHHHHHHHHHHHH--HHHHhHHHhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 111223333 333332 22333334444433 88999999999999999999999888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001085 631 IKELEAYIKNLEEELEKQA 649 (1160)
Q Consensus 631 i~~Le~qv~sl~eel~~Qa 649 (1160)
+..|..+..++..-+..++
T Consensus 295 ~~~lr~~~~s~~~~~~~~~ 313 (698)
T KOG0978|consen 295 NLKLRKQHSSAADSLESKS 313 (698)
T ss_pred HHHHHHHHHHHHhhccchh
Confidence 7788888888777666644
No 91
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.10 E-value=6.5 Score=43.06 Aligned_cols=39 Identities=31% Similarity=0.370 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHH
Q 001085 604 KELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLE 642 (1160)
Q Consensus 604 e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~ 642 (1160)
+...+.+..+..+|+.....+..+-..|..|...|..|+
T Consensus 11 d~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE 49 (237)
T PF00261_consen 11 DEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLE 49 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444
No 92
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.04 E-value=5.1 Score=43.52 Aligned_cols=142 Identities=23% Similarity=0.402 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHhhhhhhHHHHHHHHHHHhhhhHHH
Q 001085 690 RLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLEEMINKA---SEEALSLRDDYETKLCQLSNQLNVKTDQI 766 (1160)
Q Consensus 690 ~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a---~~el~~~~~~~e~Ki~~L~~qL~~~~~~~ 766 (1160)
+|+.|...|-..|-.+=+.| .+=..|+..||-+-+.+.-.++.| .++|..|+.
T Consensus 19 ~L~~en~kL~~~ve~~ee~n----a~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~-------------------- 74 (193)
T PF14662_consen 19 KLADENAKLQRSVETAEEGN----AQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKT-------------------- 74 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 45555555555553333333 333456777777777665555555 333333333
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHH----HHHhHHHHHHHhhhhhHHHHHH
Q 001085 767 EQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAE----QKESLRVELAQMKTTVKEYELL 842 (1160)
Q Consensus 767 e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e----~~e~~~~~~~~~k~~~~~~~~~ 842 (1160)
+...|+.....|-.+.++-+.-..-|..+|+.|.-+..+|..+..-+-.+.. .+..|..-+=....-+...++.
T Consensus 75 --~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~ 152 (193)
T PF14662_consen 75 --LAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAI 152 (193)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666665555555555555555555555555444433322 2233333332233333444455
Q ss_pred HHHhhhhhhhHHHHH
Q 001085 843 IQRANRERDELESTI 857 (1160)
Q Consensus 843 ~~~~~~e~~~l~~~~ 857 (1160)
+...+..+.+|..+|
T Consensus 153 l~e~t~~i~eL~~~i 167 (193)
T PF14662_consen 153 LSERTQQIEELKKTI 167 (193)
T ss_pred HHHHHhhHHHHHHHH
Confidence 555555555555443
No 93
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.77 E-value=21 Score=47.27 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=14.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHH
Q 001085 675 ETLRKTRLKNANTAERLQEEFRR 697 (1160)
Q Consensus 675 eaLrktR~~na~~~e~LqeE~~~ 697 (1160)
+.|+.-+..|..+|...++.+..
T Consensus 1629 e~lk~~~~qns~~A~~a~~~a~s 1651 (1758)
T KOG0994|consen 1629 EELKHKAAQNSAEAKQAEKTAGS 1651 (1758)
T ss_pred HHHHHHHHhccHHHHHHHHHHHH
Confidence 34666666777777766666655
No 94
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=94.76 E-value=9.3 Score=43.19 Aligned_cols=207 Identities=23% Similarity=0.286 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 001085 643 EELEKQAQVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASE 722 (1160)
Q Consensus 643 eel~~Qaq~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~se 722 (1160)
.+|.+-.+.-++..+.=.+.=..|-.....|-.+|. ..|....+.++.|+...-. ++-..++.
T Consensus 23 ~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le---~~~~~~l~~ak~eLqe~ee--------------k~e~~l~~ 85 (258)
T PF15397_consen 23 KELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILE---YSNHKQLQQAKAELQEWEE--------------KEESKLSK 85 (258)
T ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHH---ccChHHHHHHHHHHHHHHH--------------HHHhHHHH
Confidence 444444444433333333333445555555544444 5666666777777765322 23447889
Q ss_pred HHHhHHHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHH
Q 001085 723 LRMQKRHLEEMINKASEEALSL----RDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEI 798 (1160)
Q Consensus 723 Lr~~~~~LEe~L~~a~~el~~~----~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~ei 798 (1160)
|+.|...|.+.+++++++++-| -.+|-+|.- ++.....+++++...-+ +++.++.+-.....+.|+..+
T Consensus 86 Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~v----qIa~L~rqlq~lk~~qq---dEldel~e~~~~el~~l~~~~ 158 (258)
T PF15397_consen 86 LQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAV----QIANLVRQLQQLKDSQQ---DELDELNEMRQMELASLSRKI 158 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999874 345555432 22222222232222111 222222333333333444444
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 001085 799 QQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIE 878 (1160)
Q Consensus 799 q~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~k 878 (1160)
|.-+.+|- +.-....-.+. ..++++.. -+-.....|+..-|..-
T Consensus 159 q~k~~~il-------------------~~~~~k~~~~~--~~~l~~~~---------------~~N~~m~kei~~~re~i 202 (258)
T PF15397_consen 159 QEKKEEIL-------------------SSAAEKTQSPM--QPALLQRT---------------LENQVMQKEIVQFREEI 202 (258)
T ss_pred HHHHHHHH-------------------HHHHHHHHhhc--hHHHHHHH---------------HHHHHHHHHHHHHHHHH
Confidence 33333221 11111000000 01111111 12223355666666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHhhhhhh
Q 001085 879 DEKEAAVELLKSELELLKVQCHNLKQALVED 909 (1160)
Q Consensus 879 deke~~~~~l~se~~~l~~q~~~lk~~l~~~ 909 (1160)
++=+..|..|..||+.|+.+--+.+...|.+
T Consensus 203 ~el~e~I~~L~~eV~~L~~~~~~~Re~iF~d 233 (258)
T PF15397_consen 203 DELEEEIPQLRAEVEQLQAQAQDPREVIFAD 233 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHhhHH
Confidence 7778889999999999999887777777665
No 95
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.53 E-value=12 Score=43.46 Aligned_cols=131 Identities=22% Similarity=0.293 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhHHH----------------HHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHH
Q 001085 792 GALSLEIQQLKADTEKLMMDNKSLSEEA----------------EQKESLRVELAQMKTTVKEYELLIQRANRERDELES 855 (1160)
Q Consensus 792 ~~~~~eiq~l~~~~~~l~~e~~~l~e~~----------------e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~ 855 (1160)
..+..++..|+.++..+.-++..|.+++ ..++.+-..||+++.-+.+.+--++...-|..|+..
T Consensus 82 k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ 161 (319)
T PF09789_consen 82 KKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVT 161 (319)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544 346778888888988889998889888889999988
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Q 001085 856 TIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKK 929 (1160)
Q Consensus 856 ~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~k 929 (1160)
+-.-.+.-|...-.||+-+-.-.+-+ + .+|.+|-...-=|+.-|..=+.|++=++.-|...|.-|..
T Consensus 162 ERD~yk~K~~RLN~ELn~~L~g~~~r--i-----vDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 162 ERDAYKCKAHRLNHELNYILNGDENR--I-----VDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCC--c-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888888775433221 1 1667777777777778888888999999999999998883
No 96
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.53 E-value=12 Score=43.35 Aligned_cols=52 Identities=17% Similarity=0.362 Sum_probs=33.4
Q ss_pred ChhHHHhHHHHHHHhhhhhhhHHHHHhhcchhhHHHhhhhhhHHHHHHHHHH
Q 001085 969 GSKEIANLRERIKLLEGQIKSKEIALEASTNSFVEKEKDLKNKIEELECRVE 1020 (1160)
Q Consensus 969 ~s~~~a~l~~~ik~~e~~ik~~~~a~~~s~~~~~~ke~~l~~~i~e~~~~~~ 1020 (1160)
-+..|..||.-+.+|=.|+..-+..-.+...-|+..|+.+.-.=-.|..+|.
T Consensus 227 ~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~ 278 (310)
T PF09755_consen 227 LSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKLQ 278 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666676666666666666666666666778888877655555555543
No 97
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.52 E-value=12 Score=43.31 Aligned_cols=71 Identities=24% Similarity=0.299 Sum_probs=47.2
Q ss_pred hhhhhHHHHHHHHHHHHHhhHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHH
Q 001085 848 RERDELESTIALVKKEAESSVEEVQRIQR-IEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQ 919 (1160)
Q Consensus 848 ~e~~~l~~~~~~~k~eae~~~~el~~~~~-~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kq 919 (1160)
.|+..|.+.|+.+.+.+.....|-..|.. +...| .+=+.|++|+..|+..|.+.-..|.+-+.|--++|++
T Consensus 234 EEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~sk-e~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~~ 305 (306)
T PF04849_consen 234 EEITSLLSQIVDLQQRCKQLAAENEELQQHLQASK-ESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRKR 305 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 45555555565555555555444433333 33333 4456689999999999999999999988888887764
No 98
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.37 E-value=2.6 Score=43.58 Aligned_cols=81 Identities=23% Similarity=0.403 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhh
Q 001085 729 HLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKL 808 (1160)
Q Consensus 729 ~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l 808 (1160)
.+++.|..+.-+-.++++ +|..|.-.|.......+.+..+.+++-..++.++ +.+..+..+.+.|..++..+
T Consensus 7 ~v~~kLK~~~~e~dsle~----~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~----~el~~lt~el~~L~~EL~~l 78 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLED----HVESLERELEMSQENKECLILDAENSKAEIETLE----EELEELTSELNQLELELDTL 78 (140)
T ss_pred HHHHHHHHHHHhHhhHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777 8888888888888888888777777777664433 33455555666666666666
Q ss_pred hhhhhhhhH
Q 001085 809 MMDNKSLSE 817 (1160)
Q Consensus 809 ~~e~~~l~e 817 (1160)
+.++..|..
T Consensus 79 ~sEk~~L~k 87 (140)
T PF10473_consen 79 RSEKENLDK 87 (140)
T ss_pred HHHHHHHHH
Confidence 655544444
No 99
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.28 E-value=7.7 Score=41.94 Aligned_cols=140 Identities=25% Similarity=0.319 Sum_probs=95.5
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHH
Q 001085 791 SGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEE 870 (1160)
Q Consensus 791 ~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~e 870 (1160)
|..|..++..|...++.+..||..|-..--.-+ ++ |.+....-++|-.-|+..-.|.....+.
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~----------kA-------L~k~e~~e~~Lpqll~~h~eEvr~Lr~~ 76 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQLQKRQE----------KA-------LQKYEDTEAELPQLLQRHNEEVRVLRER 76 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH-------HHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777766655311111 11 2222222334444455555666666666
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhh-hhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhcccc
Q 001085 871 VQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALV-EDESEKEKLRKQAFQLKGDLKKKEDALNSLEKKLKDSNRR 947 (1160)
Q Consensus 871 l~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~-~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~~~s~~~ 947 (1160)
|-+.+.-..+-+..+.....++..+++++..|+...- .+=.|.++|..++..+...+...+..+..+++++.-+++.
T Consensus 77 LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~ 154 (194)
T PF15619_consen 77 LRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKS 154 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 6666666667777888888888889999888887643 2446799999999999999999999999999998766443
No 100
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.22 E-value=17 Score=44.07 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q 001085 713 AMKALAEASELRMQKRHLEEMINKA 737 (1160)
Q Consensus 713 ~~~A~~E~seLr~~~~~LEe~L~~a 737 (1160)
+..-..+...|..+|.-|+++++.|
T Consensus 266 ~~~i~~~i~~lk~~n~~l~e~i~ea 290 (622)
T COG5185 266 VHIINTDIANLKTQNDNLYEKIQEA 290 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666667777777777666
No 101
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.17 E-value=6.9 Score=43.74 Aligned_cols=68 Identities=29% Similarity=0.426 Sum_probs=56.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhc
Q 001085 875 QRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEKKLKDS 944 (1160)
Q Consensus 875 ~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~~~s 944 (1160)
...+|++ .++.|..|+..++.+-..|-+.|.+=.-+.++|.+++.-|+..+.+-+..+...+.++...
T Consensus 83 ~~v~~~~--e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e 150 (239)
T COG1579 83 SAVKDER--ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEE 150 (239)
T ss_pred hccccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445544 5788999999999999999999999999999999999999999998888888777765443
No 102
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.16 E-value=17 Score=43.68 Aligned_cols=85 Identities=20% Similarity=0.350 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001085 574 IINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQAQVYE 653 (1160)
Q Consensus 574 ~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~~Qaq~f~ 653 (1160)
.++..+.+|+.++.++..+...|.+|++++.+++.++-....+|++-.......-+.|.++...+.-|+.+-..|-..+.
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La 118 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLA 118 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888889998888888888888888888888877776666665555444555555555555555544444443444
Q ss_pred hhHHH
Q 001085 654 ADLEV 658 (1160)
Q Consensus 654 ~dl~a 658 (1160)
.=|.+
T Consensus 119 ~~L~A 123 (420)
T COG4942 119 EQLAA 123 (420)
T ss_pred HHHHH
Confidence 33333
No 103
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.15 E-value=14 Score=42.85 Aligned_cols=202 Identities=24% Similarity=0.319 Sum_probs=110.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhHhHHHHHHHHhhhhcccCCCCCCC-CchhhhhhHHHHHhhh
Q 001085 487 LYSEIEIYRRDKDELETQMEQLALDYEILKQENHDISYKLEQSQLQEQLKMQYECSSIGNGSE-PETQVESLENELKIKS 565 (1160)
Q Consensus 487 L~~ele~y~~~~~eLe~k~eqL~~dye~LkQEN~dis~KLEqsqlqe~l~~~~ecSs~~~~~~-le~~iesle~elk~~~ 565 (1160)
|..+|+.|+.+++....-.+||...|..|+...-++.|. |...++... |....
T Consensus 14 L~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~---------------~~~~~d~~~~~~~~~----------- 67 (319)
T PF09789_consen 14 LSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQE---------------AAGFGDPSIPPEKEN----------- 67 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------------hcccCCccCCcccch-----------
Confidence 478999999999999998999998888887764443321 111111100 00000
Q ss_pred hhchhhHH-HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHH
Q 001085 566 KDLSDSLA-IINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEE 644 (1160)
Q Consensus 566 ~e~sdSl~-~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~ee 644 (1160)
-+++ .+.+...+...|..|.+.=.+.+..+|-.+.-|-+.+......- ....+.....+=+.-|..| +.
T Consensus 68 ----~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~-----~~~~~~~~~~ere~lV~qL-Ek 137 (319)
T PF09789_consen 68 ----KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGD-----EGIGARHFPHEREDLVEQL-EK 137 (319)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhh-----ccccccccchHHHHHHHHH-HH
Confidence 0222 44455555555555544444555555555555544432221111 1111111112222222222 55
Q ss_pred HHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 001085 645 LEKQAQVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELR 724 (1160)
Q Consensus 645 l~~Qaq~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr 724 (1160)
+..|...++-|+.++.-++.|-. .-|=-+..-|.||..|+-. +. ...++ -|..++.|-
T Consensus 138 ~~~q~~qLe~d~qs~lDEkeEl~-----------~ERD~yk~K~~RLN~ELn~----~L---~g~~~----rivDIDaLi 195 (319)
T PF09789_consen 138 LREQIEQLERDLQSLLDEKEELV-----------TERDAYKCKAHRLNHELNY----IL---NGDEN----RIVDIDALI 195 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH----Hh---CCCCC----CcccHHHHH
Confidence 66666667777777766665522 2233344456667666622 22 22222 455899999
Q ss_pred HhHHHHHHHHHHHHHHHHhhhh
Q 001085 725 MQKRHLEEMINKASEEALSLRD 746 (1160)
Q Consensus 725 ~~~~~LEe~L~~a~~el~~~~~ 746 (1160)
+.|+-|-|.|..+.+|..+++.
T Consensus 196 ~ENRyL~erl~q~qeE~~l~k~ 217 (319)
T PF09789_consen 196 MENRYLKERLKQLQEEKELLKQ 217 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988765
No 104
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.12 E-value=7.4 Score=42.31 Aligned_cols=129 Identities=22% Similarity=0.235 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHH
Q 001085 793 ALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQ 872 (1160)
Q Consensus 793 ~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~ 872 (1160)
.+..-+..|.++|..|......+-.-......+..+++.||+.+...+..-...-.+.-.++++.-.+-.+.+...+|-
T Consensus 33 ~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen- 111 (193)
T PF14662_consen 33 TAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEEN- 111 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3334444455555555555455544444555666777878777776665544444444444444333333333333222
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhh
Q 001085 873 RIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEKKLK 942 (1160)
Q Consensus 873 ~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~~ 942 (1160)
+.|+.+.+.++.++.+|- .++..|+.||...+.=+--++..++..-....
T Consensus 112 -------------~kl~~e~~~lk~~~~eL~-------~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~ 161 (193)
T PF14662_consen 112 -------------GKLLAERDGLKKRSKELA-------TEKATLQRQLCEFESLICQRDAILSERTQQIE 161 (193)
T ss_pred -------------hHHHHhhhhHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 445566666666666553 27778888887777766666666655544433
No 105
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=94.02 E-value=15 Score=42.40 Aligned_cols=207 Identities=22% Similarity=0.349 Sum_probs=118.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHh------h
Q 001085 718 AEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEED------S 791 (1160)
Q Consensus 718 ~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~------~ 791 (1160)
.+|+.+|.....|-...+.-.+.+++++.++ .++.+++.--......+-..++...+.+..+.+....+ +
T Consensus 34 ~~~~~~~ekRdeln~kvrE~~e~~~elr~~r----deineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~ 109 (294)
T COG1340 34 KEASELAEKRDELNAKVRELREKAQELREER----DEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSI 109 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCH
Confidence 3555555555444444444444445555532 23333333333333334445555666666666666655 3
Q ss_pred hHHHHHHHHHHHhhhhhhh---hhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhH
Q 001085 792 GALSLEIQQLKADTEKLMM---DNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSV 868 (1160)
Q Consensus 792 ~~~~~eiq~l~~~~~~l~~---e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~ 868 (1160)
.++..+|+.|.-..+...- +-..|-+++.+ |+.+|+..++..+ .+..+.+|..++-.++++|...-
T Consensus 110 ~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~---L~k~le~~~k~~e--------~~~~~~el~aei~~lk~~~~e~~ 178 (294)
T COG1340 110 KSLEREIERLEKKQQTSVLTPEEERELVQKIKE---LRKELEDAKKALE--------ENEKLKELKAEIDELKKKAREIH 178 (294)
T ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH---HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888776654321 11233333433 5556654443332 23445566666677777777777
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 001085 869 EEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEK 939 (1160)
Q Consensus 869 ~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek 939 (1160)
+++..+..--++--.-+-.+-.+...+|.--+.|..-+.+--..-+.+..-+-++.++|..-+..+..+..
T Consensus 179 eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~ 249 (294)
T COG1340 179 EKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRA 249 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776666556666666677778888888888887777666666666666666666666555555544433
No 106
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.96 E-value=12 Score=41.12 Aligned_cols=55 Identities=20% Similarity=0.302 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Q 001085 689 ERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDD 747 (1160)
Q Consensus 689 e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~ 747 (1160)
+.+...++.|..++ .+-|.-+-.|...|..|-.+...||..|.........++.+
T Consensus 172 ~~~e~~i~~L~~~l----keaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~e 226 (237)
T PF00261_consen 172 DEYEEKIRDLEEKL----KEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEE 226 (237)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566665555 44566666777777777777777777777776666666553
No 107
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=93.96 E-value=26 Score=45.00 Aligned_cols=27 Identities=19% Similarity=0.227 Sum_probs=18.2
Q ss_pred HHHHHHHhhhhhHHHHHHhhhHHHHHH
Q 001085 398 LRLQLQKTQESNAELILAVQDLDEMLE 424 (1160)
Q Consensus 398 L~LQLqKTQESN~ELvlaVqDLEEmLE 424 (1160)
+.-|+.-+|.+..+|-.-.|-|-+++-
T Consensus 104 ~~sQiriLQn~c~~lE~ekq~lQ~ti~ 130 (1265)
T KOG0976|consen 104 HESQIRILQNKCLRLEMEKQKLQDTIQ 130 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777778877777776666666554
No 108
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=93.85 E-value=34 Score=46.06 Aligned_cols=81 Identities=25% Similarity=0.269 Sum_probs=52.1
Q ss_pred HHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhh
Q 001085 864 AESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEKKLKD 943 (1160)
Q Consensus 864 ae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~~~ 943 (1160)
++.+++.+.++-.-=.+...-+..+.+++..+.++...++..|-+-..+++.+.++-..-....+++...++.+...|..
T Consensus 873 ~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~ 952 (1294)
T KOG0962|consen 873 IERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQ 952 (1294)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333344455667777888888888888888888888888888888655333344454666666666644
Q ss_pred c
Q 001085 944 S 944 (1160)
Q Consensus 944 s 944 (1160)
.
T Consensus 953 ~ 953 (1294)
T KOG0962|consen 953 I 953 (1294)
T ss_pred H
Confidence 4
No 109
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.84 E-value=6.4 Score=40.84 Aligned_cols=78 Identities=24% Similarity=0.283 Sum_probs=55.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHH
Q 001085 569 SDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELE 646 (1160)
Q Consensus 569 sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~ 646 (1160)
.++...|..|++++..+-.++..-..++..+++.-+.|..++|+.+.....=-...++|...|+.+|....-|.+++.
T Consensus 48 En~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~ 125 (140)
T PF10473_consen 48 ENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESK 125 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 347777888888888888888888888888888888888888888777555555555555555555555444444433
No 110
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.79 E-value=23 Score=43.85 Aligned_cols=59 Identities=22% Similarity=0.275 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHH-HHHHHHHH
Q 001085 711 KVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQI-EQMLKEIN 774 (1160)
Q Consensus 711 ~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~-e~m~~el~ 774 (1160)
.-+.-|+.|+-.|+.|.+.|-..++.+.+ +-+|+.+++.|.++|.+..+.- ..|..++.
T Consensus 408 ~k~~~a~~e~i~lk~ql~~l~~~~n~tde-----~~~~e~evq~l~~kl~llekasla~l~~evq 467 (772)
T KOG0999|consen 408 CKYAVAVDEMIQLKDQLKALYHQLNYTDE-----KVQYEKEVQELVEKLRLLEKASLAELEKEVQ 467 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccch-----hhhHHHHHHHHHHHHHHHHHhhHHHhHHHHH
Confidence 34566888999999999988887666554 5678889999998887654443 44444443
No 111
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.73 E-value=23 Score=43.76 Aligned_cols=119 Identities=27% Similarity=0.343 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhccccCccCcCccccccCCCCCCCCCChhHHHhHHHHHHHhhhhhh
Q 001085 909 DESEKEKLRKQAFQLKGDLKKKEDALNSLEKKLKDSNRRASVSDGTRTTLRNNKSAPVSQGSKEIANLRERIKLLEGQIK 988 (1160)
Q Consensus 909 ~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~~~s~~~~~~~~~t~~~~~n~~~~~~~~~s~~~a~l~~~ik~~e~~ik 988 (1160)
-+-.||.|..|+..||+=|-.|.+.++.+-.-|+.|.--+ .-..|+++++--.--.+-+--|-.||.-+|.|
T Consensus 596 ~dk~~e~l~~~ilklksllstkreqi~tlrtvlkankqta---evaltnlksKYEnEK~mvtetm~KlRnELk~L----- 667 (772)
T KOG0999|consen 596 ADKDKEALMEQILKLKSLLSTKREQITTLRTVLKANKQTA---EVALTNLKSKYENEKAMVTETMDKLRNELKAL----- 667 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHH-----
Confidence 3557899999999999999999999998887777663322 11234444431110011122234455555555
Q ss_pred hHHHHHh--hcchhhHHHhhhhhhHHHHHHHHHH-------hhhcccchhhhhhhhhhcc
Q 001085 989 SKEIALE--ASTNSFVEKEKDLKNKIEELECRVE-------ELNQNSTSLCELSFQKLAT 1039 (1160)
Q Consensus 989 ~~~~a~~--~s~~~~~~ke~~l~~~i~e~~~~~~-------e~n~~~~~~~~~~~q~~~~ 1039 (1160)
||.|-- +--.+|.-+=-++..+++|+...|. -+|+ ..|-.-+||++.
T Consensus 668 -kedaatfsslramf~~R~ee~~tq~de~~~ql~aaedekKtln~---llrmaiqqklal 723 (772)
T KOG0999|consen 668 -KEDAATFSSLRAMFAARCEEYVTQLDELQRQLAAAEDEKKTLNQ---LLRMAIQQKLAL 723 (772)
T ss_pred -HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHH
Confidence 444332 2234565444444444444444432 3444 567777888653
No 112
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=93.70 E-value=4 Score=42.01 Aligned_cols=125 Identities=22% Similarity=0.299 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHH
Q 001085 716 ALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALS 795 (1160)
Q Consensus 716 A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~ 795 (1160)
|..=+..+.++.+.|+...-....+|.+++. |+..|-.+|+.....+......++...+..... .+|.
T Consensus 12 a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~----K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~--------E~l~ 79 (143)
T PF12718_consen 12 AQDRAEELEAKVKQLEQENEQKEQEITSLQK----KNQQLEEELDKLEEQLKEAKEKLEESEKRKSNA--------EQLN 79 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH--------HHHH
Confidence 3344667888889999999999999999988 888888888877777666655555444333221 2888
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001085 796 LEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKK 862 (1160)
Q Consensus 796 ~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~ 862 (1160)
..||.|+.+++..-.......++ |.++....++++--++....+++.++.++..+..
T Consensus 80 rriq~LEeele~ae~~L~e~~ek----------l~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~ 136 (143)
T PF12718_consen 80 RRIQLLEEELEEAEKKLKETTEK----------LREADVKAEHFERKVKALEQERDQWEEKYEELEE 136 (143)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999888655444444443 3333445666677777777777777776666543
No 113
>PRK09039 hypothetical protein; Validated
Probab=92.90 E-value=6.7 Score=45.49 Aligned_cols=128 Identities=23% Similarity=0.215 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHH
Q 001085 793 ALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQ 872 (1160)
Q Consensus 793 ~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~ 872 (1160)
-|+.+|..++.++..|..++..|++-+.-...-..++ ...+.+..+.+.....+|..|++-++
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l---~~~l~~l~~~l~~a~~~r~~Le~~~~-------------- 105 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIAELADLLSLERQGNQDL---QDSVANLRASLSAAEAERSRLQALLA-------------- 105 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHh--------------
Confidence 4677888888888888888777776543333322222 12233333333333334443333332
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhc
Q 001085 873 RIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEKKLKDS 944 (1160)
Q Consensus 873 ~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~~~s 944 (1160)
.+......++..+..+...+.++|...++....-..|+.||..|++.|-.-+.++...|.+.++.
T Consensus 106 -------~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~ 170 (343)
T PRK09039 106 -------ELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRES 170 (343)
T ss_pred -------hhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222334555555666777777777777888888999999999998888888888777775433
No 114
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.85 E-value=33 Score=42.96 Aligned_cols=185 Identities=21% Similarity=0.306 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHH-HHHHHHH
Q 001085 574 IINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEEL-EKQAQVY 652 (1160)
Q Consensus 574 ~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel-~~Qaq~f 652 (1160)
+|.+|+..++.++..++..+..-.++ |=+.+..++..-++.|+.+.. ..=.+++.|+..|.+|+.-+ ..|.+.|
T Consensus 146 ~v~~l~e~l~k~~~~~~~~ie~~a~~--~e~~~~q~~~e~e~~L~~~~~---~~~~q~~~le~ki~~lq~a~~~t~~el~ 220 (629)
T KOG0963|consen 146 TVRNLKERLRKLEQLLEIFIENAANE--TEEKLEQEWAEREAGLKDEEQ---NLQEQLEELEKKISSLQSAIEDTQNELF 220 (629)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 44455555555554444443211111 112222223444444444432 22345667788888886322 2333222
Q ss_pred HhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHhhhhhhhhhHH-----------HHHHHHHH
Q 001085 653 EADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTA-ERLQEEFRRLSVQMASSFDANEKV-----------AMKALAEA 720 (1160)
Q Consensus 653 ~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~-e~LqeE~~~LS~qmsSt~eenE~~-----------~~~A~~E~ 720 (1160)
. ...+.++|--+-.||-.|--+-+..|... .-||+|+..|.-|..+.=...... ...=-.|.
T Consensus 221 ~------~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i 294 (629)
T KOG0963|consen 221 D------LKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEI 294 (629)
T ss_pred H------HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHH
Confidence 2 23334444455566666766667666654 478888888888875432222211 11122233
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 001085 721 SELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNL 776 (1160)
Q Consensus 721 seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~ 776 (1160)
..|=++...+++.+.+ .+..+..-|..|..++..+...++.|.-.|+..
T Consensus 295 ~~L~~di~~~~~S~~~-------e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 295 AQLSNDIERLEASLVE-------EREKHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333343444444433 467777788888888888888888887666654
No 115
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.63 E-value=40 Score=43.43 Aligned_cols=120 Identities=19% Similarity=0.244 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhh
Q 001085 726 QKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADT 805 (1160)
Q Consensus 726 ~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~ 805 (1160)
...+|...|..|=.+||..|++.+-||++... .++.+.+.+-.+|+.+..++ ...+
T Consensus 46 r~~hld~aLkec~~qlr~~ree~eq~i~~~~~---~~s~e~e~~~~~le~~l~e~---------------------~~~l 101 (769)
T PF05911_consen 46 RVSHLDGALKECMRQLRQVREEQEQKIHEAVA---KKSKEWEKIKSELEAKLAEL---------------------SKRL 101 (769)
T ss_pred HhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHH---------------------HHHH
Confidence 34689999999999999999999999988654 46677776666666555444 3355
Q ss_pred hhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHH
Q 001085 806 EKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQ 872 (1160)
Q Consensus 806 ~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~ 872 (1160)
..+.+||..|+.-+..++++-.+|. ..-..+++-+.........++++.++||=|.-....||.
T Consensus 102 ~~~~~e~~~l~~~l~~~~~~i~~l~---~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 102 AESAAENSALSKALQEKEKLIAELS---EEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELE 165 (769)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777788887777888666654 344667777777777888888888888888877777774
No 116
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.56 E-value=24 Score=40.59 Aligned_cols=138 Identities=21% Similarity=0.278 Sum_probs=80.4
Q ss_pred HHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 001085 820 EQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQC 899 (1160)
Q Consensus 820 e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~ 899 (1160)
+..+.|..+.+.+.........++.+.....+.|..+++.++..+... .+.--..+..|+.+|..+..+.
T Consensus 156 ~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~----------~~~D~~eL~~lr~eL~~~~~~i 225 (325)
T PF08317_consen 156 ENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEI----------ESCDQEELEALRQELAEQKEEI 225 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------hhcCHHHHHHHHHHHHHHHHHH
Confidence 344556666666666667777777777777777777777777544321 1111133444555555555555
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhccccCccCcCccccccCCCCCCCCCChhHHHhHHHH
Q 001085 900 HNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEKKLKDSNRRASVSDGTRTTLRNNKSAPVSQGSKEIANLRER 979 (1160)
Q Consensus 900 ~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~~~s~~~~~~~~~t~~~~~n~~~~~~~~~s~~~a~l~~~ 979 (1160)
..+|..|.+=+.+.+.+...|..+.....+-..++...++.+...+| ....|+..|+.+
T Consensus 226 ~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~---------------------~t~~Ev~~Lk~~ 284 (325)
T PF08317_consen 226 EAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRG---------------------WTRSEVKRLKAK 284 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------------------CCHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555444322 246788899999
Q ss_pred HHHhhhhhh
Q 001085 980 IKLLEGQIK 988 (1160)
Q Consensus 980 ik~~e~~ik 988 (1160)
+..||..--
T Consensus 285 ~~~Le~~~g 293 (325)
T PF08317_consen 285 VDALEKLTG 293 (325)
T ss_pred HHHHHHHHC
Confidence 888865543
No 117
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.29 E-value=25 Score=40.28 Aligned_cols=117 Identities=19% Similarity=0.323 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHH
Q 001085 793 ALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQ 872 (1160)
Q Consensus 793 ~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~ 872 (1160)
-.-..||.|+..+++|..|+.-= .--++-.|+.|++..+.-.+-..+++.||.|-....+...
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQr-----------------QfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~ 77 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQR-----------------QFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCE 77 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Confidence 34467899988888887665421 1134567788888888888888889999998888888888
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHH
Q 001085 873 RIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDA 933 (1160)
Q Consensus 873 ~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~ 933 (1160)
+|-..++--.--+..=-+.|--|..|++-.|. -.+.|...+..+|++|++-..+
T Consensus 78 ~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kk-------qie~Leqelkr~KsELErsQ~~ 131 (307)
T PF10481_consen 78 NLEKTRQKLSHDLQVKESQVNFLEGQLNSCKK-------QIEKLEQELKRCKSELERSQQA 131 (307)
T ss_pred HHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 87766665555555555566666666666555 2344555555566666554444
No 118
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=92.19 E-value=51 Score=43.64 Aligned_cols=61 Identities=30% Similarity=0.304 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHhhhh
Q 001085 686 NTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASEL---RMQKRHLEEMINKASEEALSLRD 746 (1160)
Q Consensus 686 ~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seL---r~~~~~LEe~L~~a~~el~~~~~ 746 (1160)
..-+.|+.|+..|..+.++--++.+.+..+|..+=-++ .-....|.-.++.-+.+|+.|++
T Consensus 401 ~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 401 NKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33345555555555555544444444444443322222 23334555555555555555444
No 119
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=92.10 E-value=36 Score=41.60 Aligned_cols=99 Identities=23% Similarity=0.287 Sum_probs=59.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhh
Q 001085 755 LSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKT 834 (1160)
Q Consensus 755 L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~ 834 (1160)
+..-++-++...+-+..+|-.+-...+..+..-+....|+.-|+..|+.++.+|.-.-+.-+-+++|+-- .
T Consensus 492 ~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vq---------s 562 (622)
T COG5185 492 LKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQ---------S 562 (622)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHH---------H
Confidence 3334444555556666677777777777788888888999999999999998776544422222232211 1
Q ss_pred hhHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001085 835 TVKEYELLIQRANRERDELESTIALVKK 862 (1160)
Q Consensus 835 ~~~~~~~~~~~~~~e~~~l~~~~~~~k~ 862 (1160)
..-+.+.+...-+.+|.++.+.++-+-.
T Consensus 563 ~~i~ld~~~~~~n~~r~~i~k~V~~v~~ 590 (622)
T COG5185 563 TEIKLDELKVDLNRKRYKIHKQVIHVID 590 (622)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123444455556666666666554433
No 120
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.03 E-value=49 Score=43.03 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHhhhcccchhhhhhhhh
Q 001085 1010 NKIEELECRVEELNQNSTSLCELSFQK 1036 (1160)
Q Consensus 1010 ~~i~e~~~~~~e~n~~~~~~~~~~~q~ 1036 (1160)
.-|..|.+-|-.+|...-..|+.+|..
T Consensus 596 ~~~q~lq~al~~ld~P~~~~~~~~p~~ 622 (980)
T KOG0980|consen 596 SGIQALQNALYQLDSPLHWRCLTSPDF 622 (980)
T ss_pred HHHHHHHHHHHhcCCCcccCcCCCHHH
Confidence 345666667777776655556555544
No 121
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.85 E-value=26 Score=39.42 Aligned_cols=63 Identities=22% Similarity=0.347 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHH
Q 001085 570 DSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELE 646 (1160)
Q Consensus 570 dSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~ 646 (1160)
.++..|..|-.++.+++.....+ .+.|.+..+++-.-.+.+.+.-..+.+++.||..++.+|.
T Consensus 7 ~~L~~iq~lD~e~~rl~~~~~~~--------------~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~ 69 (239)
T COG1579 7 KSLLAIQKLDLEKDRLEPRIKEI--------------RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQ 69 (239)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888554444 3334444444444445555555555556666665554444
No 122
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=91.85 E-value=0.32 Score=47.47 Aligned_cols=95 Identities=17% Similarity=0.290 Sum_probs=66.0
Q ss_pred eeeccccc---cccceEEEEeecCCCCccccccccccccCccccCccchhhhhccccCCccccccceeEEEEec--CCCc
Q 001085 23 HATQVAQL---GENALMISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVST--GLSK 97 (1160)
Q Consensus 23 hATQVPq~---gwDkLfVSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVSm--GSSK 97 (1160)
+|.++|.. |-+..||-++-...++...|| .|..| .||+|.-+.........++.++...|.|.- +.++
T Consensus 24 ~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kT---kv~~~----~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~ 96 (124)
T cd08389 24 RAQDIPTKDRGGASSWQVHLVLLPSKKQRAKT---KVQRG----PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRK 96 (124)
T ss_pred EecCCCchhcCCCCCcEEEEEEccCCcceeec---ccccC----CCCcccCEEEECCCCHHHhccCEEEEEEEECCCccc
Confidence 45666654 445567665544444544443 45544 499997776666566677888888888873 4567
Q ss_pred ccccceeecchhhhhhhcCcceeecccc
Q 001085 98 AGFVGEASIDFADYAEASKTSTVSLPLK 125 (1160)
Q Consensus 98 SgiLGEasINlAdYaea~kp~tVSLPLK 125 (1160)
..+||+|.|.|+++ ....+.+.-+||+
T Consensus 97 ~~~lG~~~i~L~~l-~~~~~~~~w~~L~ 123 (124)
T cd08389 97 ERLIGEKVVPLSQL-NLEGETTVWLTLE 123 (124)
T ss_pred CceEEEEEEecccc-CCCCCceEEEeCC
Confidence 88999999999999 4466777788875
No 123
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=91.82 E-value=24 Score=39.09 Aligned_cols=121 Identities=18% Similarity=0.342 Sum_probs=66.4
Q ss_pred CCCchhhhhhHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhH
Q 001085 548 SEPETQVESLENELKIKSKDLSDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDS 627 (1160)
Q Consensus 548 ~~le~~iesle~elk~~~~e~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~ 627 (1160)
..+...++.+..+|..-.+.++.....+..++.++..|+.+++ .|.++.......-..-...-...
T Consensus 20 ~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~--------------~L~~k~~~~~~~~~~l~~~t~~t 85 (264)
T PF06008_consen 20 YKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVE--------------NLQEKATKVSRKAQQLNNNTERT 85 (264)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666677766666666677777777777777774333 33333222222222223334445
Q ss_pred HHhHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q 001085 628 LATIKELEAYIKNLE---EELEKQAQVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKN 684 (1160)
Q Consensus 628 l~~i~~Le~qv~sl~---eel~~Qaq~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~n 684 (1160)
+...+.|...|..+. .+|..++.+|....... ....-.+....|+.+|+.+|-.+
T Consensus 86 ~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~--~~~~l~~~l~ea~~mL~emr~r~ 143 (264)
T PF06008_consen 86 LQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQL--PSEDLQRALAEAQRMLEEMRKRD 143 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCC--CHHHHHHHHHHHHHHHHHHHhcc
Confidence 555667777777777 56666666666522222 22333334445666777666543
No 124
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=91.63 E-value=38 Score=40.89 Aligned_cols=91 Identities=21% Similarity=0.260 Sum_probs=65.9
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHH---HHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHH
Q 001085 839 YELLIQRANRERDELESTIALVK---KEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEK 915 (1160)
Q Consensus 839 ~~~~~~~~~~e~~~l~~~~~~~k---~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~ 915 (1160)
+-.+.+.....++.|..+...+. ...+.-..+|..+..--.+....+..++.|-..+..+++ ..|..++...+.
T Consensus 152 ~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~---~~l~~~q~~l~e 228 (420)
T COG4942 152 YGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLN---SELSADQKKLEE 228 (420)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 34455556666677777666555 444555778888887777888888888888877777655 567788888888
Q ss_pred HHHHHHHhhhhhhhhHH
Q 001085 916 LRKQAFQLKGDLKKKED 932 (1160)
Q Consensus 916 l~kqv~~lk~~l~kke~ 932 (1160)
|+.+-..|++++.+-+.
T Consensus 229 L~~~~~~L~~~Ias~e~ 245 (420)
T COG4942 229 LRANESRLKNEIASAEA 245 (420)
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 88888888888877773
No 125
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=91.36 E-value=11 Score=47.95 Aligned_cols=106 Identities=25% Similarity=0.353 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhh-HHHHHHHHHhhhhccccCccCcCccccccCCCCCCC
Q 001085 888 LKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKK-EDALNSLEKKLKDSNRRASVSDGTRTTLRNNKSAPV 966 (1160)
Q Consensus 888 l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kk-e~~~~~~ek~~~~s~~~~~~~~~t~~~~~n~~~~~~ 966 (1160)
+.-+++.+++-.-....+... .=-..|+..|..++.|++++ +.++.++.=+.+ + ... + ..+..
T Consensus 576 ~kek~ea~~aev~~~g~s~~~--~~~~~lkeki~~~~~Ei~~eie~v~~S~gL~~~---~-------~~k---~-e~a~~ 639 (762)
T PLN03229 576 IKEKMEALKAEVASSGASSGD--ELDDDLKEKVEKMKKEIELELAGVLKSMGLEVI---G-------VTK---K-NKDTA 639 (762)
T ss_pred HHHHHHHHHHHHHhcCccccC--CCCHHHHHHHHHHHHHHHHHHHHHHhccCchhh---h-------hhh---h-hhccc
Confidence 445555555544444444444 23456888899998888754 333333321111 0 000 0 01110
Q ss_pred CCChhHHHhHHHHHHHhhhhhhhH-HHHHhhcchhhHHHhhhhhhHHHHHHHHHH
Q 001085 967 SQGSKEIANLRERIKLLEGQIKSK-EIALEASTNSFVEKEKDLKNKIEELECRVE 1020 (1160)
Q Consensus 967 ~~~s~~~a~l~~~ik~~e~~ik~~-~~a~~~s~~~~~~ke~~l~~~i~e~~~~~~ 1020 (1160)
... --..+++||..|+.||+.+ |.|+.+| +|+++||+|.-.+.
T Consensus 640 ~~~--p~~~~k~KIe~L~~eIkkkIe~av~ss---------~LK~k~E~Lk~Eva 683 (762)
T PLN03229 640 EQT--PPPNLQEKIESLNEEINKKIERVIRSS---------DLKSKIELLKLEVA 683 (762)
T ss_pred ccC--CChhhHHHHHHHHHHHHHHHHHHhcch---------hHHHHHHHHHHHHH
Confidence 000 0113468999999999876 6667665 79999999988773
No 126
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=90.73 E-value=20 Score=37.49 Aligned_cols=121 Identities=25% Similarity=0.297 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHH-----HHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhH
Q 001085 794 LSLEIQQLKADTEKLMMDNKSLSEEAEQKESLR-----VELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSV 868 (1160)
Q Consensus 794 ~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~-----~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~ 868 (1160)
...+|..++-.+-.+.+....+..++.+++.+. .|+++++-.+..+..-|..++. ++.-++.-+-..+
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~-------eL~~Lk~~~~~~v 76 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNK-------ELLKLKKKIGKTV 76 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 344556666666666666667777777777764 4556665555444444444433 3334444444555
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHH
Q 001085 869 EEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAF 921 (1160)
Q Consensus 869 ~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~ 921 (1160)
.-|+.+|.--..-...+..++.++.....+...++.-|..-..+..+++++..
T Consensus 77 ~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~ 129 (177)
T PF13870_consen 77 QILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNK 129 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544434444444444444444444444444444444444444444443
No 127
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=90.72 E-value=21 Score=36.85 Aligned_cols=97 Identities=22% Similarity=0.270 Sum_probs=70.1
Q ss_pred HHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhh
Q 001085 772 EINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERD 851 (1160)
Q Consensus 772 el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~ 851 (1160)
.++.+.++++.-....+.-|.+|...++.|+.+++.+..........++..++.....+.+..-|.-.|--|........
T Consensus 18 ~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~ 97 (143)
T PF12718_consen 18 ELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLK 97 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45566667777777778888889999999999999888888888888877777777666666666666666666666666
Q ss_pred hHHHHHHHHHHHHHhhH
Q 001085 852 ELESTIALVKKEAESSV 868 (1160)
Q Consensus 852 ~l~~~~~~~k~eae~~~ 868 (1160)
+...++..+...|+.+-
T Consensus 98 e~~ekl~e~d~~ae~~e 114 (143)
T PF12718_consen 98 ETTEKLREADVKAEHFE 114 (143)
T ss_pred HHHHHHHHHHHHhHHHH
Confidence 66666666655555543
No 128
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.49 E-value=38 Score=38.95 Aligned_cols=20 Identities=30% Similarity=0.425 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhhhhhhH
Q 001085 730 LEEMINKASEEALSLRDDYE 749 (1160)
Q Consensus 730 LEe~L~~a~~el~~~~~~~e 749 (1160)
++.........+..|+.++.
T Consensus 147 l~gl~~~L~~~~~~L~~D~~ 166 (325)
T PF08317_consen 147 LEGLKEGLEENLELLQEDYA 166 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444333
No 129
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.43 E-value=50 Score=40.21 Aligned_cols=207 Identities=21% Similarity=0.247 Sum_probs=113.8
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhhHHHHHHhhhHHHHHHHHhhhhcccccccCcccchHHhhhhhcCCCCCc
Q 001085 378 WVLLEEIRQELSYEKDLNANLRLQLQKTQESNAELILAVQDLDEMLEQKNREISNHSNKSGSYVNAKELRRNISKSQTDD 457 (1160)
Q Consensus 378 ~~~leELk~EL~~EKelNaNL~LQLqKTQESN~ELvlaVqDLEEmLEQk~~EIs~Ls~~~~~~~n~~e~~~~l~~~etdd 457 (1160)
.+.+++++..=..-++.|+-|. +++---..|+.++.|=++-|++.+..+.++...+ .++....
T Consensus 254 ~v~~~ales~~sq~~e~~selE----~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~------~~ltqqw------- 316 (521)
T KOG1937|consen 254 LVEYKALESKRSQFEEQNSELE----KLLKLKERLIEALDDGEAYLAKLMGKLAELNKQM------EELTQQW------- 316 (521)
T ss_pred HHHHHHHHhhhHHHHHHHHHHH----HHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHH------HHHHHHH-------
Confidence 3677777777777777777766 6666778899999999998888877665533211 1111100
Q ss_pred hHhHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHhhhhcchhhhHhHHHHHHHHh
Q 001085 458 DEDQKALEELVKEHRDVKETYLLEQKIMDLYSEIEIYRRDKDELE-TQMEQLALDYEILKQENHDISYKLEQSQLQEQLK 536 (1160)
Q Consensus 458 de~q~~l~~l~ke~~d~kE~~~L~~KI~eL~~ele~y~~~~~eLe-~k~eqL~~dye~LkQEN~dis~KLEqsqlqe~l~ 536 (1160)
.| -.--|.+|---|..++.+-. .+.-+ -+|++|+.|.+.+.+|.. -.+
T Consensus 317 --------------ed--~R~pll~kkl~Lr~~l~~~e--~e~~e~~~IqeleqdL~a~~eei~----------~~e--- 365 (521)
T KOG1937|consen 317 --------------ED--TRQPLLQKKLQLREELKNLE--TEDEEIRRIQELEQDLEAVDEEIE----------SNE--- 365 (521)
T ss_pred --------------HH--HhhhHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHHHHH----------hhH---
Confidence 00 00001111111111111100 11111 344555555555544411 001
Q ss_pred hhhcccCCCCCCCCchhhhhhHHHHHhhhhhchhhHH--HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHH
Q 001085 537 MQYECSSIGNGSEPETQVESLENELKIKSKDLSDSLA--IINELETHIEGLASELKKQSREFSNFQATIKELESQIEALG 614 (1160)
Q Consensus 537 ~~~ecSs~~~~~~le~~iesle~elk~~~~e~sdSl~--~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~ 614 (1160)
-..+.|-++|+..-.+.+.--| .|+++-.-|+.++.++-+...+-..+|.+.+++-+.|+-+=
T Consensus 366 ---------------el~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsf 430 (521)
T KOG1937|consen 366 ---------------ELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSF 430 (521)
T ss_pred ---------------HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 0112334455555555553333 78999999999999999999999999999999888864432
Q ss_pred H---HHHHH------------------hhhhhhHHHhHHH---HHHHHHHHHHHHHH
Q 001085 615 N---ELKEQ------------------SKGYSDSLATIKE---LEAYIKNLEEELEK 647 (1160)
Q Consensus 615 ~---eLK~q------------------~~e~S~~l~~i~~---Le~qv~sl~eel~~ 647 (1160)
+ +|=-+ +..|++.+.+|.. +-.+|..|+.+|..
T Consensus 431 avtdellf~sakhddhvR~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~ 487 (521)
T KOG1937|consen 431 AVTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYV 487 (521)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhH
Confidence 2 11111 4555555555553 56666666655544
No 130
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=90.14 E-value=53 Score=40.10 Aligned_cols=51 Identities=25% Similarity=0.391 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 001085 886 ELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNS 936 (1160)
Q Consensus 886 ~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~ 936 (1160)
..||.|+..+++-|--|...-..+=.+|.+--.|-..+.+-|-+||+++..
T Consensus 414 etLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeever 464 (527)
T PF15066_consen 414 ETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVER 464 (527)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHH
Confidence 467888888888888887777777777777777777787888777777553
No 131
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=90.12 E-value=60 Score=40.62 Aligned_cols=74 Identities=18% Similarity=0.361 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHH
Q 001085 571 SLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEK 647 (1160)
Q Consensus 571 Sl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~~ 647 (1160)
-...+..|+.++..++.+.+...+....++..++.+..+++.+..++...-. +.....+.|+.++..++.++..
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG---~~~~~r~~Le~ei~~le~e~~e 280 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGG---DLFEEREQLERQLKEIEAARKA 280 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666666666666665555555554444322 2222234566666666644443
No 132
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.96 E-value=81 Score=41.92 Aligned_cols=230 Identities=20% Similarity=0.273 Sum_probs=114.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHh---hhHHH
Q 001085 719 EASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEED---SGALS 795 (1160)
Q Consensus 719 E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~---~~~~~ 795 (1160)
++..|+..+..|.+.|.+-.- -+..-.+-++|+++|..-|..+...++++..-|...-.++....-.-.+. +.++.
T Consensus 653 ~~~~L~~~k~rl~eel~ei~~-~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~ 731 (1141)
T KOG0018|consen 653 EVDQLKEKKERLLEELKEIQK-RRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIK 731 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHH
Confidence 556666666555554443322 11122234559999999999988888888877776666664443332221 12334
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHHH------------------HHH---hHHHHHHHhhhhh---------HHHHHHHHH
Q 001085 796 LEIQQLKADTEKLMMDNKSLSEEAE------------------QKE---SLRVELAQMKTTV---------KEYELLIQR 845 (1160)
Q Consensus 796 ~eiq~l~~~~~~l~~e~~~l~e~~e------------------~~e---~~~~~~~~~k~~~---------~~~~~~~~~ 845 (1160)
..++..+..+.+|....+.+-..+= -.+ .=+.+++.-+..+ ..+..-+.+
T Consensus 732 r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~ 811 (1141)
T KOG0018|consen 732 RKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQKDTQRRVER 811 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheecccHHHHHHH
Confidence 4444444444444332222111100 000 0001111111110 122222333
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhh
Q 001085 846 ANRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKG 925 (1160)
Q Consensus 846 ~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~ 925 (1160)
+.+....++..+..+++.-+....++..+..++. |+ ++..+......++.|.-+..--.+.-+|.+++.-++.
T Consensus 812 ~~~~v~~~~~~~~~~~~~e~~~~k~i~e~~~~e~-k~------k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es 884 (1141)
T KOG0018|consen 812 WERSVEDLEKEIEGLKKDEEAAEKIIAEIEELEK-KN------KSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIES 884 (1141)
T ss_pred HHHHHHHHHHhHHhhHHHHHHHHHHHhhHHHHHH-HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 3333344444444444433333333333322211 11 4444555555555666666666667777777777777
Q ss_pred hhhhhHHHHHHHHHhhhhccccCccCcCccc
Q 001085 926 DLKKKEDALNSLEKKLKDSNRRASVSDGTRT 956 (1160)
Q Consensus 926 ~l~kke~~~~~~ek~~~~s~~~~~~~~~t~~ 956 (1160)
.+.+++-+..++-.+-+=.+=..|++.|+-+
T Consensus 885 ~ie~~~~er~~lL~~ckl~~I~vPl~~gs~~ 915 (1141)
T KOG0018|consen 885 KIERKESERHNLLSKCKLEDIEVPLSSGSMD 915 (1141)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccCCCcc
Confidence 7777777777776666666555677777544
No 133
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=89.92 E-value=63 Score=40.59 Aligned_cols=59 Identities=19% Similarity=0.353 Sum_probs=32.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHH
Q 001085 717 LAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQ 779 (1160)
Q Consensus 717 ~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~q 779 (1160)
+.|.-.||.....-+.....--.+++.++. +++++...+..|.+.+.++..+++...+.
T Consensus 425 ~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~----~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 425 IEEYRRLKEKASNRESESKQKLQEIKELRE----EIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 334444554443333333333355555555 66677777777777777776666655544
No 134
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.73 E-value=61 Score=42.73 Aligned_cols=151 Identities=21% Similarity=0.286 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhh---hhHHHHHHHHHHHHHhHHHHHhhhhhhHh
Q 001085 714 MKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNV---KTDQIEQMLKEINNLSNQLEEQKKHDEED 790 (1160)
Q Consensus 714 ~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~---~~~~~e~m~~el~~~s~ql~~~~~~~~~~ 790 (1160)
-++..|.-+||.+-+.||..+....+.|.+|++... ++...++-+-- +..-|+.|-. +..=+ .-++| ...
T Consensus 177 l~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~-~l~kdVE~~rer~~~~~~Ie~l~~----k~~~v-~y~~~-~~e 249 (1072)
T KOG0979|consen 177 LQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEID-KLEKDVERVRERERKKSKIELLEK----KKKWV-EYKKH-DRE 249 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH----hcccc-chHhh-hHH
Confidence 355667777888888888888887777777766444 33333332221 2222332211 01111 11122 222
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHH
Q 001085 791 SGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEE 870 (1160)
Q Consensus 791 ~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~e 870 (1160)
.++....-..+++++.+|..+..-+....+.-++ +-..+-.-+...-..+......+.+...++-...++.+.....
T Consensus 250 y~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~---~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~ 326 (1072)
T KOG0979|consen 250 YNAYKQAKDRAKKELRKLEKEIKPIEDKKEELES---EKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNK 326 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHh---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666666666666555444332222 2222223333333444444444444444444444444444333
Q ss_pred HHHH
Q 001085 871 VQRI 874 (1160)
Q Consensus 871 l~~~ 874 (1160)
+..+
T Consensus 327 le~l 330 (1072)
T KOG0979|consen 327 LESL 330 (1072)
T ss_pred HHHH
Confidence 3333
No 135
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.66 E-value=43 Score=38.31 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=26.3
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHhhhhccccCccCcCccccccC-CCCCCCCCCh
Q 001085 918 KQAFQLKGDLKKKEDALNSLEKKLKDSNRRASVSDGTRTTLRN-NKSAPVSQGS 970 (1160)
Q Consensus 918 kqv~~lk~~l~kke~~~~~~ek~~~~s~~~~~~~~~t~~~~~n-~~~~~~~~~s 970 (1160)
.++.++..++..-+..+..++..+....=++| -||+-+.... ..+..|..|.
T Consensus 246 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP-~dG~V~~~~~~~~G~~v~~g~ 298 (423)
T TIGR01843 246 EELTEAQARLAELRERLNKARDRLQRLIIRSP-VDGTVQSLKVHTVGGVVQPGE 298 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcEEECC-CCcEEEEEEEEccCceecCCC
Confidence 34555556666666666666555554433333 4566654432 3344444443
No 136
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=89.10 E-value=40 Score=37.18 Aligned_cols=167 Identities=20% Similarity=0.322 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHH----hhhhhhhhhhhHHHHHHHH-HHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHH
Q 001085 574 IINELETHIEGLASELKK----QSREFSNFQATIKELESQI-EALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQ 648 (1160)
Q Consensus 574 ~I~~Le~qi~~LE~Ele~----Q~~~f~~~qst~e~L~eel-q~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~~Q 648 (1160)
.+..+...|.+|+..++. -...++.+|+.++.-+..+ .+.++.+-.....++..+ ..|...+..|+..+...
T Consensus 35 r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l---~~L~~ri~~L~~~i~ee 111 (247)
T PF06705_consen 35 RFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQEQLQSRL---DSLNDRIEALEEEIQEE 111 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 444555555555544443 3344556666555555553 222333333333333332 33444555554444444
Q ss_pred HHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 001085 649 AQVYEADLEVVTRAKVEQEQRAIQAEETLRKTR----LKNANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELR 724 (1160)
Q Consensus 649 aq~f~~dl~a~~~~k~eqE~rai~aEeaLrktR----~~na~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr 724 (1160)
-.....+++.+... -........+++..-| -.......+|-+++.+|...+..--..+|..+.....++.++.
T Consensus 112 ~~~r~~~ie~~~~~---l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~ 188 (247)
T PF06705_consen 112 KEERPQDIEELNQE---LVRELNELQEAFENERNEREEREENILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVK 188 (247)
T ss_pred HHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333332211 1111111222222111 1234456688888888888887777778888888888888887
Q ss_pred HhHHHHHHHHHH-HHHHHHhhhh
Q 001085 725 MQKRHLEEMINK-ASEEALSLRD 746 (1160)
Q Consensus 725 ~~~~~LEe~L~~-a~~el~~~~~ 746 (1160)
.....=++.++. +-+||.+++.
T Consensus 189 ~~~~~~~e~f~~~v~~Ei~~lk~ 211 (247)
T PF06705_consen 189 RRREKGDEQFQNFVLEEIAALKN 211 (247)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHH
Confidence 766666666666 7777777766
No 137
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.08 E-value=38 Score=38.72 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=9.2
Q ss_pred HHHHHHHHHhhhhhhhhHH
Q 001085 914 EKLRKQAFQLKGDLKKKED 932 (1160)
Q Consensus 914 e~l~kqv~~lk~~l~kke~ 932 (1160)
..++.++..++..+..-+.
T Consensus 249 ~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 249 TEAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544333
No 138
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=88.57 E-value=69 Score=39.21 Aligned_cols=89 Identities=24% Similarity=0.195 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHH
Q 001085 686 NTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQ 765 (1160)
Q Consensus 686 ~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~ 765 (1160)
.....++.||.++-..+...-..--.-...-+.|...||.+.... + . ..-..+++..+..|...|=.|..+
T Consensus 337 ~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~------~--~-~s~~~elE~rl~~lt~~Li~KQ~~ 407 (511)
T PF09787_consen 337 AELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSAR------A--S-SSSWNELESRLTQLTESLIQKQTQ 407 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH------h--c-cCCcHhHHHHHhhccHHHHHHHHH
Confidence 344466667766666554444444444444456666666554331 1 0 112456778888888888778777
Q ss_pred HHHHHHHHHHHhHHHHHh
Q 001085 766 IEQMLKEINNLSNQLEEQ 783 (1160)
Q Consensus 766 ~e~m~~el~~~s~ql~~~ 783 (1160)
+|.+.-+=....=||+.+
T Consensus 408 lE~l~~ek~al~lqlErl 425 (511)
T PF09787_consen 408 LESLGSEKNALRLQLERL 425 (511)
T ss_pred HHHHHhhhhhccccHHHH
Confidence 777766555555455443
No 139
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=88.55 E-value=28 Score=35.15 Aligned_cols=70 Identities=29% Similarity=0.362 Sum_probs=55.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHH
Q 001085 751 KLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAE 820 (1160)
Q Consensus 751 Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e 820 (1160)
.|..|-.+++.....+..+..+++.....|...+..=++.-..|..+|..++..+..|...|..|..|++
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666677777777777788888887777777777788889999999999999999999988874
No 140
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=87.24 E-value=66 Score=37.54 Aligned_cols=76 Identities=26% Similarity=0.317 Sum_probs=43.3
Q ss_pred CCCCchHhHHHHHHHHhhccChh-hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH--------HHHHHHHHhhhhcchh
Q 001085 453 SQTDDDEDQKALEELVKEHRDVK-ETYLLEQKIMDLYSEIEIYRRDKDELETQMEQ--------LALDYEILKQENHDIS 523 (1160)
Q Consensus 453 ~etddde~q~~l~~l~ke~~d~k-E~~~L~~KI~eL~~ele~y~~~~~eLe~k~eq--------L~~dye~LkQEN~dis 523 (1160)
+...-+.++..+..|..++.--+ |....+.+...|..++...|...-.+-.+-++ |.+.+..|++|..+|.
T Consensus 18 S~~t~~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~ 97 (310)
T PF09755_consen 18 SSATREQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLA 97 (310)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334567777777766554322 56666666666666665555553333322221 5666677777777776
Q ss_pred hhHhH
Q 001085 524 YKLEQ 528 (1160)
Q Consensus 524 ~KLEq 528 (1160)
.++|+
T Consensus 98 ~~~e~ 102 (310)
T PF09755_consen 98 LKYEQ 102 (310)
T ss_pred HHHHH
Confidence 55554
No 141
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=87.20 E-value=65 Score=37.39 Aligned_cols=18 Identities=44% Similarity=0.612 Sum_probs=14.3
Q ss_pred CChhHHHhHHHHHHHhhh
Q 001085 968 QGSKEIANLRERIKLLEG 985 (1160)
Q Consensus 968 ~~s~~~a~l~~~ik~~e~ 985 (1160)
...+|+..|++++..||-
T Consensus 268 ~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 268 FTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 467899999999888854
No 142
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=87.08 E-value=1.1e+02 Score=40.01 Aligned_cols=74 Identities=20% Similarity=0.301 Sum_probs=41.7
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhH---hhhHHHHHHHHHHHhhhhhhhh
Q 001085 738 SEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEE---DSGALSLEIQQLKADTEKLMMD 811 (1160)
Q Consensus 738 ~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~---~~~~~~~eiq~l~~~~~~l~~e 811 (1160)
-.+|++...+--.|..+...|+..-...|.-|..+..++-++|+.+++.... +....+.....|++++..+-.+
T Consensus 433 ~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e 509 (980)
T KOG0980|consen 433 YTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIE 509 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445666666677666666666666666666677666666555 4444444444444444444333
No 143
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=87.07 E-value=50 Score=35.92 Aligned_cols=74 Identities=22% Similarity=0.400 Sum_probs=41.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHH---HHHHHHhhhhhhHHHhHHHHHHHHHHHH
Q 001085 569 SDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALG---NELKEQSKGYSDSLATIKELEAYIKNLE 642 (1160)
Q Consensus 569 sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~---~eLK~q~~e~S~~l~~i~~Le~qv~sl~ 642 (1160)
.+-+..|+.|+.+|+.|..--......+.........|-+-|++++ ++|+++-..|.---..+..+.+.+..++
T Consensus 23 ~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~e 99 (201)
T PF13851_consen 23 LNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELE 99 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467789999999998886555555555555555555555543333 3344444444443334444444444444
No 144
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=86.89 E-value=1.6 Score=42.27 Aligned_cols=92 Identities=20% Similarity=0.225 Sum_probs=55.0
Q ss_pred CCCCccccccccccccCccccCccchhhhhccccCCccccccceeEEEEe-c-CCCcccccceeecchhhhhh-hcCcce
Q 001085 43 DVGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVS-T-GLSKAGFVGEASIDFADYAE-ASKTST 119 (1160)
Q Consensus 43 DtGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVS-m-GSSKSgiLGEasINlAdYae-a~kp~t 119 (1160)
..|+...||. ..-.+-+..|...++=. +.+..++...+....|.|. - ..++..+||.+.|.+++... ...+..
T Consensus 27 ~l~~~~~kT~-v~~~t~nP~Wne~f~F~---v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~ 102 (126)
T cd08682 27 QLGKEKYSTS-VKEKTTSPVWKEECSFE---LPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRT 102 (126)
T ss_pred EECCeeeeee-eecCCCCCEeCceEEEE---ecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCccc
Confidence 3466665533 33334566676653211 2222223344556677664 2 33567899999999999863 345677
Q ss_pred eeccccCCC-----CCceeeEeee
Q 001085 120 VSLPLKYSR-----SKAVLHVSIQ 138 (1160)
Q Consensus 120 VSLPLK~cn-----sGtVLHVtIQ 138 (1160)
.-+||...+ ...=|||+||
T Consensus 103 ~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 103 RWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred EEEECcCCCCCCccccceEEEEeC
Confidence 888997532 3356788887
No 145
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=86.50 E-value=71 Score=37.10 Aligned_cols=36 Identities=22% Similarity=0.424 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001085 474 VKETYLLEQKIMDLYSEIEIYRRDKDELETQMEQLA 509 (1160)
Q Consensus 474 ~kE~~~L~~KI~eL~~ele~y~~~~~eLe~k~eqL~ 509 (1160)
.+-..-...++.+|+.++..++....++-+++.+|.
T Consensus 150 ~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la 185 (294)
T COG1340 150 AKKALEENEKLKELKAEIDELKKKAREIHEKIQELA 185 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455777788888888888888888887776
No 146
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=86.41 E-value=75 Score=38.01 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=33.8
Q ss_pred CCCchhhhhhHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHhh
Q 001085 548 SEPETQVESLENELKIKSKDLSDSLAIINELETHIEGLASELKKQS 593 (1160)
Q Consensus 548 ~~le~~iesle~elk~~~~e~sdSl~~I~~Le~qi~~LE~Ele~Q~ 593 (1160)
..+..++-.++.++..-...+.+.-..|..++.+++.++..+....
T Consensus 250 ~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~ 295 (498)
T TIGR03007 250 SELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEG 295 (498)
T ss_pred CchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhc
Confidence 4455667677777777766677777888899999988887776543
No 147
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=86.41 E-value=71 Score=37.07 Aligned_cols=138 Identities=18% Similarity=0.321 Sum_probs=80.2
Q ss_pred hhhhhhHHHHHhhhhhchhhHH-------HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH-HHHHHHHHHHHHhhh
Q 001085 552 TQVESLENELKIKSKDLSDSLA-------IINELETHIEGLASELKKQSREFSNFQATIKELES-QIEALGNELKEQSKG 623 (1160)
Q Consensus 552 ~~iesle~elk~~~~e~sdSl~-------~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~e-elq~s~~eLK~q~~e 623 (1160)
..++.++..|..+...|.+... .+..+--.+......+......+......++..-. +|-.+.++|+.+..+
T Consensus 140 kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~e 219 (312)
T smart00787 140 KLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQE 219 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3566667677666666444433 33334444444444444443333333333333222 245555555555555
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001085 624 YSDSLATIKELEAYIKNLEEELEKQAQVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRRLSV 700 (1160)
Q Consensus 624 ~S~~l~~i~~Le~qv~sl~eel~~Qaq~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~ 700 (1160)
+......+.+++.++. .+..++++.+..+.+....+..|+--+...|.=....+.+|...|..|..
T Consensus 220 i~~~~~~l~e~~~~l~-----------~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 220 IMIKVKKLEELEEELQ-----------ELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 5554444444444443 45666677777777888888888887888888888888888888877644
No 148
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=86.33 E-value=1.3e+02 Score=39.98 Aligned_cols=92 Identities=20% Similarity=0.210 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHH----------HHH
Q 001085 576 NELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLE----------EEL 645 (1160)
Q Consensus 576 ~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~----------eel 645 (1160)
..|+..+.+.|++...+.......++|.-.|+++.++-..+|....+..+.-...-..++.++.+.. .+|
T Consensus 625 ~~l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~~~~l 704 (1072)
T KOG0979|consen 625 PVLEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIENLVVDL 704 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4688889999999999999999999999999999776666666555444444443344444444433 333
Q ss_pred HHHHHHHHhhHHHHHHhhHHHHHHHH
Q 001085 646 EKQAQVYEADLEVVTRAKVEQEQRAI 671 (1160)
Q Consensus 646 ~~Qaq~f~~dl~a~~~~k~eqE~rai 671 (1160)
. +..+++.+....++.+..+++
T Consensus 705 ~----~qkee~~~~~~~~I~~~~~~~ 726 (1072)
T KOG0979|consen 705 D----RQEEEYAASEAKKILDTEDMR 726 (1072)
T ss_pred H----HHHHHHHHHHHHHHHhHHHHH
Confidence 3 334455555555555555543
No 149
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=86.29 E-value=5.3 Score=38.41 Aligned_cols=110 Identities=14% Similarity=0.103 Sum_probs=61.4
Q ss_pred eeeeeccccccccc---eEEEEeecCCCCccccccccccccCccccCccchhhhhccccCCccccccceeEEEEec--CC
Q 001085 21 QFHATQVAQLGENA---LMISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVST--GL 95 (1160)
Q Consensus 21 qFhATQVPq~gwDk---LfVSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVSm--GS 95 (1160)
-+.|..+|...+.. -||.|.....++.+.||. ..-.+-+..|..++.=.+. . + ......|.|-- ..
T Consensus 7 v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~-~~~~t~~P~Wne~f~f~i~----~--~--~~~~L~i~v~d~d~~ 77 (126)
T cd04043 7 IVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTR-TIYDTLNPRWDEEFELEVP----A--G--EPLWISATVWDRSFV 77 (126)
T ss_pred EEEeECCCCCCCCCCCCceEEEEECCCCeeeeccc-EecCCCCCcccceEEEEcC----C--C--CCCEEEEEEEECCCC
Confidence 46777787654332 356554332223344433 2223445556544432221 1 1 12344555542 33
Q ss_pred Ccccccceeecchhhhhhh--cCcceeeccccCCCCCceeeEeeeeecc
Q 001085 96 SKAGFVGEASIDFADYAEA--SKTSTVSLPLKYSRSKAVLHVSIQRVQE 142 (1160)
Q Consensus 96 SKSgiLGEasINlAdYaea--~kp~tVSLPLK~cnsGtVLHVtIQ~Lt~ 142 (1160)
.+..++|++.|+++++.-. -.+..+.+||.. .|.| |+.|..-+.
T Consensus 78 ~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i-~l~~~~~~~ 123 (126)
T cd04043 78 GKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRL-LLRVSMEGE 123 (126)
T ss_pred CCCceEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeE-EEEEEEeee
Confidence 4788999999999987432 345678999976 4766 887776544
No 150
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.23 E-value=1.2e+02 Score=39.42 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHH
Q 001085 883 AAVELLKSELELLKVQCHNLKQALVEDESEKEKLRK 918 (1160)
Q Consensus 883 ~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~k 918 (1160)
+-+..-..|+.++..|..+||.-+.....-|+.+-+
T Consensus 556 kE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk 591 (1118)
T KOG1029|consen 556 KETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYK 591 (1118)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556677777777777777776666666655
No 151
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=86.07 E-value=29 Score=44.05 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=48.1
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHH
Q 001085 700 VQMASSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQ 768 (1160)
Q Consensus 700 ~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~ 768 (1160)
.-|--..+.-|+-+..|.+|.---|--|.+||+.|..-.++++.+.+ |...|..+|.+-..+..+
T Consensus 66 ~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~ee----kn~slqerLelaE~~l~q 130 (916)
T KOG0249|consen 66 EDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEE----KNRSLQERLELAEPKLQQ 130 (916)
T ss_pred cccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHH----hhhhhhHHHHHhhHhhHh
Confidence 33444556667777777777777777788999999888888887777 888888888776655544
No 152
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=85.95 E-value=1.8 Score=41.37 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=39.8
Q ss_pred cceeEEEEe-cCCCcccccceeecchhhhhhhcCcceeeccccCCCCCceeeEeeee
Q 001085 84 ERIYNFIVS-TGLSKAGFVGEASIDFADYAEASKTSTVSLPLKYSRSKAVLHVSIQR 139 (1160)
Q Consensus 84 EkiYKfVVS-mGSSKSgiLGEasINlAdYaea~kp~tVSLPLK~cnsGtVLHVtIQ~ 139 (1160)
.....|.|- -+..+..+||.+.|+|++......-..--+||.++..|+| |+++|.
T Consensus 53 ~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~~w~~L~~~~~G~i-~~~~~~ 108 (111)
T cd04052 53 KSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQQWFPLSGNGQGRI-RISALW 108 (111)
T ss_pred CCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhccceeEECCCCCCCEE-EEEEEE
Confidence 334455554 3444789999999999999765444567889998766665 998886
No 153
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=85.95 E-value=1e+02 Score=38.43 Aligned_cols=275 Identities=21% Similarity=0.291 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhh--------------------------------hhhhhHHHHHHHHHHHHH
Q 001085 568 LSDSLAIINELETHIEGLASELKKQSREFS--------------------------------NFQATIKELESQIEALGN 615 (1160)
Q Consensus 568 ~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~--------------------------------~~qst~e~L~eelq~s~~ 615 (1160)
|.-+...|...+.++-..|+.++.+..+.. .+=+++..|+.+|.+...
T Consensus 99 F~kA~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~lEk~Le~i~~ 178 (570)
T COG4477 99 FNKAKHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPELEKKLENIEE 178 (570)
T ss_pred hHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q ss_pred HHHHH-----hhhhhhHHHhHHHHHHHHHHHH--------------HHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHH
Q 001085 616 ELKEQ-----SKGYSDSLATIKELEAYIKNLE--------------EELEKQAQVYEADLEVVTRAKVEQEQRAIQAEET 676 (1160)
Q Consensus 616 eLK~q-----~~e~S~~l~~i~~Le~qv~sl~--------------eel~~Qaq~f~~dl~a~~~~k~eqE~rai~aEea 676 (1160)
.|.+= +-+|-++-.-|...+.++.-|. .++=.|.+.+..-...|..+.--.+.-.|.+
T Consensus 179 ~l~qf~~lt~~Gd~ieA~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr~m~~~gY~l~~~~id~--- 255 (570)
T COG4477 179 ELSQFVELTSSGDYIEAREVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLKAGYRDMKEEGYHLEHVNIDS--- 255 (570)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHccCCcccccHHH---
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 001085 677 LRKTRLKNANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLS 756 (1160)
Q Consensus 677 LrktR~~na~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~ 756 (1160)
+|.+|..|. .++......|| |..|+++|.++++ +|+.+=
T Consensus 256 -----------------~~~~L~~~l------------------~~~~~~l~~Le--ld~aeeel~~I~e----~ie~lY 294 (570)
T COG4477 256 -----------------RLERLKEQL------------------VENSELLTQLE--LDEAEEELGLIQE----KIESLY 294 (570)
T ss_pred -----------------HHHHHHHHH------------------HHHHhHHHHhh--hhhHHHHHHHHHH----HHHHHH
Q ss_pred HHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhh
Q 001085 757 NQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTV 836 (1160)
Q Consensus 757 ~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~ 836 (1160)
..+.--..+..-....+....+-|..++. .+..|+.+|+.++.-+..--..+-.-..+..+|..+....
T Consensus 295 d~lE~EveA~~~V~~~~~~l~~~l~k~ke-----------~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~ 363 (570)
T COG4477 295 DLLEREVEAKNVVEENLPILPDYLEKAKE-----------NNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVL 363 (570)
T ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHHH-----------HHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhh-------hhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 001085 837 KEYELLIQRANR-------ERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKV 897 (1160)
Q Consensus 837 ~~~~~~~~~~~~-------e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~ 897 (1160)
.+.-..++..++ ...+++..+..+.++-++..+.|+.+|.-.-+-..-+..+++.+.+++.
T Consensus 364 ~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR 431 (570)
T COG4477 364 DEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKR 431 (570)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 154
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=84.55 E-value=84 Score=40.60 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=14.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHh
Q 001085 721 SELRMQKRHLEEMINKASEEALS 743 (1160)
Q Consensus 721 seLr~~~~~LEe~L~~a~~el~~ 743 (1160)
--||..|++|.-.|.-.|.+||-
T Consensus 390 QplrsENaqLrRrLrilnqqlre 412 (861)
T PF15254_consen 390 QPLRSENAQLRRRLRILNQQLRE 412 (861)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Confidence 44666666666666666666654
No 155
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=84.45 E-value=42 Score=43.03 Aligned_cols=27 Identities=11% Similarity=0.254 Sum_probs=16.4
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhhH
Q 001085 738 SEEALSLRDDYETKLCQLSNQLNVKTD 764 (1160)
Q Consensus 738 ~~el~~~~~~~e~Ki~~L~~qL~~~~~ 764 (1160)
.+++..++.+-+.+|.++.+..+++..
T Consensus 603 keki~~~~~Ei~~eie~v~~S~gL~~~ 629 (762)
T PLN03229 603 KEKVEKMKKEIELELAGVLKSMGLEVI 629 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhh
Confidence 344445566666667777776666555
No 156
>PF13166 AAA_13: AAA domain
Probab=84.02 E-value=1.2e+02 Score=37.76 Aligned_cols=60 Identities=25% Similarity=0.394 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhc
Q 001085 885 VELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEKKLKDS 944 (1160)
Q Consensus 885 ~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~~~s 944 (1160)
+..++.++..+...+..++..+..-..+..++.+++..|+..+..-+.....+-+.|+.-
T Consensus 412 i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 412 IEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 334555666666666777777777777777888888888888776666666666666555
No 157
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=83.78 E-value=3.5 Score=39.05 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=39.3
Q ss_pred cceeEEEEec--CCCcccccceeecchhhhhhhcCcceeeccccCCCCCceeeEeeee
Q 001085 84 ERIYNFIVST--GLSKAGFVGEASIDFADYAEASKTSTVSLPLKYSRSKAVLHVSIQR 139 (1160)
Q Consensus 84 EkiYKfVVSm--GSSKSgiLGEasINlAdYaea~kp~tVSLPLK~cnsGtVLHVtIQ~ 139 (1160)
.....|-|.- ..++..++|.+.|++++... -.+..+.+||..+ .|.+ |+-|.+
T Consensus 60 ~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~-~~~~~~w~~L~~~-~G~~-~~~~~~ 114 (116)
T cd08376 60 SQILEIEVWDKDTGKKDEFIGRCEIDLSALPR-EQTHSLELELEDG-EGSL-LLLLTL 114 (116)
T ss_pred CCEEEEEEEECCCCCCCCeEEEEEEeHHHCCC-CCceEEEEEccCC-CcEE-EEEEEe
Confidence 3455666642 44678999999999999876 5678899999987 5766 665554
No 158
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=83.66 E-value=1.2e+02 Score=37.39 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=19.3
Q ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHhh
Q 001085 849 ERDELESTIALVKKEAESSVEEVQRIQR 876 (1160)
Q Consensus 849 e~~~l~~~~~~~k~eae~~~~el~~~~~ 876 (1160)
.+..|..++..++++....-.+|...|.
T Consensus 347 ~le~L~~el~~l~~~l~~~a~~Ls~~R~ 374 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKAAVALSLIRR 374 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667777777777777777776654
No 159
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=83.49 E-value=1.5e+02 Score=38.19 Aligned_cols=323 Identities=26% Similarity=0.298 Sum_probs=159.8
Q ss_pred HHHHHHHhhh-------hhh-hhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 001085 585 LASELKKQSR-------EFS-NFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQAQVYEADL 656 (1160)
Q Consensus 585 LE~Ele~Q~~-------~f~-~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~~Qaq~f~~dl 656 (1160)
.|+|+-+..+ +|. ++++-+..--++.-.+-=.||-|-.++.+++.. |-.+|.+|++++.++.+.=
T Consensus 282 QEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQLkaQeleh~~~~~q---L~~qVAsLQeev~sq~qEq---- 354 (739)
T PF07111_consen 282 QEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQLKAQELEHRDSVKQ---LRGQVASLQEEVASQQQEQ---- 354 (739)
T ss_pred HHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHH---HHHHHHHHHHHHHHHHHHH----
Confidence 4556655553 133 677777777777777778888888888887665 7889999999988877532
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001085 657 EVVTRAKVEQEQRAIQAEETLRKTRLK-NANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLEEMIN 735 (1160)
Q Consensus 657 ~a~~~~k~eqE~rai~aEeaLrktR~~-na~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~ 735 (1160)
+|.+-.. |.+- ||..+.+..-+ =.....+-|++..++..+.. ......+.+.++ ++.-...|+...-
T Consensus 355 -aiLq~SL-qDK~---AElevERv~sktLQ~ELsrAqea~~~lqqq~~-----~aee~Lk~v~ea--v~S~q~~L~s~ma 422 (739)
T PF07111_consen 355 -AILQHSL-QDKA---AELEVERVGSKTLQAELSRAQEARRRLQQQTA-----SAEEQLKLVSEA--VSSSQQWLESQMA 422 (739)
T ss_pred -HHHHHHH-hHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 1222211 1111 11122211100 00011111222222111110 011111222222 1111112333333
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHH--HHHHHHHhHHHHHhhhhh--hHhhhHHHHHHHHHHHhhhhhhhh
Q 001085 736 KASEEALSLRDDYETKLCQLSNQLNVKTDQIEQM--LKEINNLSNQLEEQKKHD--EEDSGALSLEIQQLKADTEKLMMD 811 (1160)
Q Consensus 736 ~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m--~~el~~~s~ql~~~~~~~--~~~~~~~~~eiq~l~~~~~~l~~e 811 (1160)
++..-+ ..|..|.+-|.+-+..+.-+ ++-...++.++. +.... .--..++..|.++|+.+-..|.++
T Consensus 423 ~ve~a~--------aRL~sL~~RlSyAvrrv~tiqGL~Ark~Alaqlr-qe~~~~~pp~~~dL~~ELqqLReERdRl~ae 493 (739)
T PF07111_consen 423 KVEQAL--------ARLPSLSNRLSYAVRRVHTIQGLMARKLALAQLR-QEQCPPSPPSVTDLSLELQQLREERDRLDAE 493 (739)
T ss_pred HHHHHH--------HHHHHHhHHHHHHhcccchhHHHHHHHHHHHHHH-hccCCCCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 332211 13444555555433333211 111122333332 11111 111247888888888888888777
Q ss_pred hhhhhHHHHHH-----HhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHH-------HHHhhHHHHHHHhhhhh
Q 001085 812 NKSLSEEAEQK-----ESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKK-------EAESSVEEVQRIQRIED 879 (1160)
Q Consensus 812 ~~~l~e~~e~~-----e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~-------eae~~~~el~~~~~~kd 879 (1160)
...-..-+.++ |....++..+-......+..++.....+.++...+..+.+ +|.....||.+.+.
T Consensus 494 LqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~--- 570 (739)
T PF07111_consen 494 LQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQE--- 570 (739)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---
Confidence 55433334333 5666777777777788888888887777777776665543 34444555555543
Q ss_pred HHHHHHHHHHHHHHH-HHHHhHHHHhhhhhhh------------------HHH-----------HHHHHHHHHhhhhhhh
Q 001085 880 EKEAAVELLKSELEL-LKVQCHNLKQALVEDE------------------SEK-----------EKLRKQAFQLKGDLKK 929 (1160)
Q Consensus 880 eke~~~~~l~se~~~-l~~q~~~lk~~l~~~e------------------~ek-----------e~l~kqv~~lk~~l~k 929 (1160)
.-+.++..--+||++ ++-|+.++-..|.+-- -|| +-.+++...|+..|+-
T Consensus 571 ~y~~alqekvsevEsrl~E~L~~~E~rLNeARREHtKaVVsLRQ~qrqa~reKer~~E~~~lq~e~~~~e~~rl~~rlqe 650 (739)
T PF07111_consen 571 VYERALQEKVSEVESRLREQLSEMEKRLNEARREHTKAVVSLRQIQRQAAREKERNQELRRLQEEARKEEGQRLTQRLQE 650 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333333345543 4445555555444311 111 2234556667777777
Q ss_pred hHHHHHHHH
Q 001085 930 KEDALNSLE 938 (1160)
Q Consensus 930 ke~~~~~~e 938 (1160)
.|...|=|.
T Consensus 651 lerdkNl~l 659 (739)
T PF07111_consen 651 LERDKNLML 659 (739)
T ss_pred HHHhhhHHH
Confidence 776666655
No 160
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=83.43 E-value=1.9e+02 Score=39.52 Aligned_cols=236 Identities=22% Similarity=0.276 Sum_probs=107.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHh---hhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 001085 682 LKNANTAERLQEEFRRLSVQM---ASSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQ 758 (1160)
Q Consensus 682 ~~na~~~e~LqeE~~~LS~qm---sSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~q 758 (1160)
.--....+++..|.+...... .+..+.+ .+++.=+.++|..+..+-+.+-+...++..+++.-.-.....++.
T Consensus 784 ~~~~~~~e~~~~d~~~~~k~ie~~~s~l~~~----~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l 859 (1294)
T KOG0962|consen 784 QTDVTVLERFLKDLKLREKEIEELVSELDSS----VDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRL 859 (1294)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhcccc----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344456666665544333 1111211 234555677888887777777777777776665544444444444
Q ss_pred HhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHH
Q 001085 759 LNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKE 838 (1160)
Q Consensus 759 L~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~ 838 (1160)
.++++...+.+. .+......+ .+.++.+.+++.+|..+..++..+......+....+.... +.++++..-.-
T Consensus 860 ~~~~~e~k~~~~-~~~~~l~~~----~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s---~~e~~k~~~~~ 931 (1294)
T KOG0962|consen 860 INLRNELKEEKQ-KIERSLARL----QQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQS---EKEELKNERNT 931 (1294)
T ss_pred HHHHHHHHHHHH-HHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHH---HHHHHHHHhhH
Confidence 444444433222 222222222 2233344455555555555555444444444333322222 33333333222
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHhhHH---------HHHHHhhhhhHHHHHHHHHHHHH---------HHHHHHhH
Q 001085 839 YELLIQRANRERDELESTIALVKKEAESSVE---------EVQRIQRIEDEKEAAVELLKSEL---------ELLKVQCH 900 (1160)
Q Consensus 839 ~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~---------el~~~~~~kdeke~~~~~l~se~---------~~l~~q~~ 900 (1160)
.++..|....++++.++.+--+.+....... .|.-...-.+++...++..+--+ ..=-.++.
T Consensus 932 ~~~~aqk~~~~ine~~s~l~~~~~~~~~~~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~~~ 1011 (1294)
T KOG0962|consen 932 SEKLAQKKRNDINEKVSLLHQIYKLNECFEQYGFDDLRIAQLSESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNLTLR 1011 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5555566656666666555433322221111 11111111122222222211111 11123455
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Q 001085 901 NLKQALVEDESEKEKLRKQAFQLKGDLKK 929 (1160)
Q Consensus 901 ~lk~~l~~~e~eke~l~kqv~~lk~~l~k 929 (1160)
.|+.-+.+.+.|..-+.+|+.+..+..-+
T Consensus 1012 ~l~~q~~e~~re~~~ld~Qi~~~~~~~~~ 1040 (1294)
T KOG0962|consen 1012 NLERKLKELERELSELDKQILEADIKSVK 1040 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 66666677777777777777777755433
No 161
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.01 E-value=94 Score=35.65 Aligned_cols=140 Identities=21% Similarity=0.298 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-------------------hhhhhhHHHhHHH
Q 001085 573 AIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQ-------------------SKGYSDSLATIKE 633 (1160)
Q Consensus 573 ~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q-------------------~~e~S~~l~~i~~ 633 (1160)
..|..+..++..+..++..--.+.+.++..|..|.+.+-.-++-|+.| ++.|||++.+|..
T Consensus 59 ~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvtA 138 (265)
T COG3883 59 NQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRVTA 138 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHHHHHHH
Confidence 355566666666666666666666677788888888887778888887 7889999888886
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 001085 634 LEAYIKNLEEELEKQAQVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQMASSFDANEKVA 713 (1160)
Q Consensus 634 Le~qv~sl~eel~~Qaq~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~qmsSt~eenE~~~ 713 (1160)
+.. |.+--+.|-.+- .+.+.+.-....+|. .+-.+..-|+.|+.-.-.+|-+-..+.+.++
T Consensus 139 i~~-iv~aDk~ile~q--------------k~dk~~Le~kq~~l~----~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~ 199 (265)
T COG3883 139 ISV-IVDADKKILEQQ--------------KEDKKSLEEKQAALE----DKLETLVALQNELETQLNSLNSQKAEKNALI 199 (265)
T ss_pred HHH-HHHHhHHHHHHH--------------HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 532 222222221111 111222222222332 1222333445555544445555555566666
Q ss_pred HHHHHHHHHHHHhHHHHH
Q 001085 714 MKALAEASELRMQKRHLE 731 (1160)
Q Consensus 714 ~~A~~E~seLr~~~~~LE 731 (1160)
+.+-.+-+.+...+..|+
T Consensus 200 ~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 200 AALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 666666666665555555
No 162
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=82.87 E-value=1.3e+02 Score=37.01 Aligned_cols=123 Identities=24% Similarity=0.314 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHH
Q 001085 609 QIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQAQVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTA 688 (1160)
Q Consensus 609 elq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~~Qaq~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~ 688 (1160)
+++.+...++ .-..|...+..+.++..++..+.-.+.. ...+=.++.+||.+. | -..
T Consensus 195 ~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~-----------~~~el~~Yk~kA~~i---L--------q~k 251 (511)
T PF09787_consen 195 ERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGES-----------EEAELQQYKQKAQRI---L--------QSK 251 (511)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHH---h--------cCH
Confidence 3444444444 3345666666666665555555444443 333444566555443 2 233
Q ss_pred HHHHHHHHH-HHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHH
Q 001085 689 ERLQEEFRR-LSVQMASSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQI 766 (1160)
Q Consensus 689 e~LqeE~~~-LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~ 766 (1160)
|++-..++. ... ..|+.+ .+. .|..+|+.+...+.+.++..+.+|..++. -++++..++.......
T Consensus 252 EklI~~LK~~~~~---~~~~~~--~~~---~el~~l~~E~~~~~ee~~~l~~Qi~~l~~----e~~d~e~~~~~~~~~~ 318 (511)
T PF09787_consen 252 EKLIESLKEGCLE---EGFDSS--TNS---IELEELKQERDHLQEEIQLLERQIEQLRA----ELQDLEAQLEGEQESF 318 (511)
T ss_pred HHHHHHHHhcccc---cccccc--cch---hcchhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHH
Confidence 444444444 111 111110 000 57777777777777666666666554444 3344444444333333
No 163
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=82.86 E-value=14 Score=39.31 Aligned_cols=123 Identities=28% Similarity=0.352 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHH
Q 001085 571 SLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQAQ 650 (1160)
Q Consensus 571 Sl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~~Qaq 650 (1160)
+.+.|..++..+..+.+||-.-...-..+...+..++.+++.+..++..........-..+..|+..+..+..+|..+..
T Consensus 65 ~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k 144 (194)
T PF08614_consen 65 SSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNK 144 (194)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888888888877766666677888888888888888888888888888888888899999888877776653
Q ss_pred HHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001085 651 VYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRR 697 (1160)
Q Consensus 651 ~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~ 697 (1160)
..+.=-|.+...+.+ ..-+|+.+++..-+|.--|+|+-+...+
T Consensus 145 ~~e~l~DE~~~L~l~----~~~~e~k~~~l~~En~~Lv~Rwm~~k~~ 187 (194)
T PF08614_consen 145 ANEILQDELQALQLQ----LNMLEEKLRKLEEENRELVERWMQRKAQ 187 (194)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222444444433 3566777888888888888887765554
No 164
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=82.29 E-value=5.1 Score=42.62 Aligned_cols=107 Identities=25% Similarity=0.324 Sum_probs=26.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhh
Q 001085 707 DANEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKH 786 (1160)
Q Consensus 707 eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~ 786 (1160)
.+-+..+.+.-.|..+++..+..+...|..++.+++.++. ++......|+..+..+..+..++...-.++....+.
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~----~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~ 145 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEK----ELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKA 145 (194)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666778888888888888888888888877766 555555555554444444444444333333322222
Q ss_pred hhHh---hhHHHHHHHHHHHhhhhhhhhhhhhhH
Q 001085 787 DEED---SGALSLEIQQLKADTEKLMMDNKSLSE 817 (1160)
Q Consensus 787 ~~~~---~~~~~~eiq~l~~~~~~l~~e~~~l~e 817 (1160)
-+.. +.++..+.-+++..+.+|..||..|-+
T Consensus 146 ~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 146 NEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 133444444555555555555444433
No 165
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=82.27 E-value=1e+02 Score=35.42 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHH
Q 001085 791 SGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVK 861 (1160)
Q Consensus 791 ~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k 861 (1160)
...|..++-.|+.++..+.+-...|.+-+-.-|..-++|+-.| --+..++.+--...+---..+|.|.
T Consensus 86 ~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErak---Rati~sleDfeqrLnqAIErnAfLE 153 (333)
T KOG1853|consen 86 RVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAK---RATIYSLEDFEQRLNQAIERNAFLE 153 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhh---hhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666665444333333333333333334444333 2334444444444444444445444
No 166
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=82.14 E-value=83 Score=34.47 Aligned_cols=6 Identities=17% Similarity=0.540 Sum_probs=3.0
Q ss_pred CCCCCC
Q 001085 963 SAPVSQ 968 (1160)
Q Consensus 963 ~~~~~~ 968 (1160)
+.|+|.
T Consensus 180 ~~~lp~ 185 (302)
T PF10186_consen 180 GLPLPN 185 (302)
T ss_pred CcccCC
Confidence 445553
No 167
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=82.09 E-value=1.1e+02 Score=35.58 Aligned_cols=114 Identities=21% Similarity=0.320 Sum_probs=53.9
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHH
Q 001085 563 IKSKDLSDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLE 642 (1160)
Q Consensus 563 ~~~~e~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~ 642 (1160)
..+..+.++.-.|..|-.....+..++..-.......+.....|..+..+++.++-+- ...-.++.+|=
T Consensus 12 q~l~~l~~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~-----------~~~k~KLE~LC 80 (309)
T PF09728_consen 12 QSLNKLSSPEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKA-----------ILAKSKLESLC 80 (309)
T ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Confidence 3333444445555555555555655555544444455555555555544444444311 12334444555
Q ss_pred HHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001085 643 EELEKQAQVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQMAS 704 (1160)
Q Consensus 643 eel~~Qaq~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~qmsS 704 (1160)
.+|.++-..+.++...+ ...+.+.| .-.++.+|.-+..++.+|..
T Consensus 81 RELQk~Nk~lkeE~~~~--~~eee~kR---------------~el~~kFq~~L~dIq~~~ee 125 (309)
T PF09728_consen 81 RELQKQNKKLKEESKRR--AREEEEKR---------------KELSEKFQATLKDIQAQMEE 125 (309)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHH---------------HHHHHHHHHHHHHHHHHHHh
Confidence 55555554444333111 11111111 12345667777777777743
No 168
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=81.83 E-value=26 Score=37.91 Aligned_cols=68 Identities=24% Similarity=0.270 Sum_probs=50.9
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhh
Q 001085 841 LLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVE 908 (1160)
Q Consensus 841 ~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~ 908 (1160)
..+.....+..++++.|+-+....-........|+..|.+++.-|..|++++..+...+.+.++.+..
T Consensus 117 ~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 117 KKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333355556666666666666666666777788889999999999999999999999999887653
No 169
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=80.55 E-value=1.7e+02 Score=37.05 Aligned_cols=85 Identities=22% Similarity=0.242 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhh
Q 001085 712 VAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDS 791 (1160)
Q Consensus 712 ~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~ 791 (1160)
.+..|-+|+..|| ..|.+||...+.-+.+ -++.+...|+.|-..|.++ +++++..+.---+-.
T Consensus 250 ri~~lE~e~e~L~-------~ql~~~N~~~~~~~~~---~i~~~~~~L~~kd~~i~~L-------~~di~~~~~S~~~e~ 312 (629)
T KOG0963|consen 250 RIVFLEREVEQLR-------EQLAKANSSKKLAKID---DIDALGSVLNQKDSEIAQL-------SNDIERLEASLVEER 312 (629)
T ss_pred HHHHHHHHHHHHH-------HHHHhhhhhhhhccCC---chHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 3444555555444 4566676666554322 2334444444455555554 455555555445555
Q ss_pred hHHHHHHHHHHHhhhhhhhhhh
Q 001085 792 GALSLEIQQLKADTEKLMMDNK 813 (1160)
Q Consensus 792 ~~~~~eiq~l~~~~~~l~~e~~ 813 (1160)
+.+..+|+.|++++.....+..
T Consensus 313 e~~~~qI~~le~~l~~~~~~le 334 (629)
T KOG0963|consen 313 EKHKAQISALEKELKAKISELE 334 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777766654443333
No 170
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=80.25 E-value=34 Score=38.17 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=10.7
Q ss_pred HHHHhhhhhHHHHHHHHHhhhhhhh
Q 001085 828 ELAQMKTTVKEYELLIQRANRERDE 852 (1160)
Q Consensus 828 ~~~~~k~~~~~~~~~~~~~~~e~~~ 852 (1160)
+|.++..-|...|..+.....+++.
T Consensus 54 eLrqI~~DIn~lE~iIkqa~~er~~ 78 (230)
T PF10146_consen 54 ELRQINQDINTLENIIKQAESERNK 78 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 171
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=79.50 E-value=1.9e+02 Score=36.89 Aligned_cols=61 Identities=21% Similarity=0.266 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHH
Q 001085 632 KELEAYIKNLEEELEKQAQVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNA--NTAERLQEEFR 696 (1160)
Q Consensus 632 ~~Le~qv~sl~eel~~Qaq~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na--~~~e~LqeE~~ 696 (1160)
..||+|-..|--++. .+---+.+|.+++.|+|.+...+|.-+..++-.+. +.-|+||-|-+
T Consensus 170 tsLETqKlDLmaevS----eLKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~k 232 (861)
T KOG1899|consen 170 TSLETQKLDLMAEVS----ELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETK 232 (861)
T ss_pred hhHHHHHhHHHHHHH----HhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555554444 23444567777777888887777777776663322 23346665433
No 172
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=79.48 E-value=1e+02 Score=39.28 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHH
Q 001085 600 QATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKN 640 (1160)
Q Consensus 600 qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~s 640 (1160)
+..+..+...+-.+...+++....+......+..+..+...
T Consensus 113 q~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 153 (670)
T KOG0239|consen 113 QSNLSELNMALLESVEELSQAEEDNPSIFVSLLELAQENRG 153 (670)
T ss_pred ccchhhhhhhhhhhhHhhhhhhcccccHHHHHHHHHhhhcc
Confidence 33333444444334444554444444444444444333333
No 173
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=79.40 E-value=25 Score=42.58 Aligned_cols=92 Identities=20% Similarity=0.305 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHH
Q 001085 716 ALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALS 795 (1160)
Q Consensus 716 A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~ 795 (1160)
.+.|+..|--....+|..-+-+...+..++. |++.+.++|..-++.-..|...++.-.+.++.+++...+...+.-
T Consensus 359 ~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~----k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d 434 (493)
T KOG0804|consen 359 LITEADSLKQESSDLEAEKKIVERKLQQLQT----KLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKD 434 (493)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333443455 888999999888888888888888999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhh
Q 001085 796 LEIQQLKADTEKLMMD 811 (1160)
Q Consensus 796 ~eiq~l~~~~~~l~~e 811 (1160)
.+|+-|+..+.+||.-
T Consensus 435 ~~I~dLqEQlrDlmf~ 450 (493)
T KOG0804|consen 435 EKITDLQEQLRDLMFF 450 (493)
T ss_pred HHHHHHHHHHHhHhee
Confidence 9999999999887753
No 174
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=79.18 E-value=1.6e+02 Score=35.72 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=12.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001085 677 LRKTRLKNANTAERLQEEFRRLSVQM 702 (1160)
Q Consensus 677 LrktR~~na~~~e~LqeE~~~LS~qm 702 (1160)
+...|.|++.+ |.|+.+++.|-
T Consensus 125 ~~~a~~n~~kA----qQ~lar~t~Q~ 146 (499)
T COG4372 125 LAAARQNLAKA----QQELARLTKQA 146 (499)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHH
Confidence 44444555433 66777777765
No 175
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=79.04 E-value=98 Score=33.31 Aligned_cols=62 Identities=24% Similarity=0.362 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 001085 709 NEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEIN 774 (1160)
Q Consensus 709 nE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~ 774 (1160)
+|-++..|+.+...+..+...|+..+..+...+..|+. .|..|...|.-.....+.+.....
T Consensus 82 ~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~----~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 82 REDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKE----QLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999988888877777 555555555555555554444444
No 176
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=78.74 E-value=41 Score=41.46 Aligned_cols=103 Identities=20% Similarity=0.295 Sum_probs=68.5
Q ss_pred hhhhhHHHhHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001085 622 KGYSDSLATIKELEAYIKNLEEELEKQAQV---YEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRRL 698 (1160)
Q Consensus 622 ~e~S~~l~~i~~Le~qv~sl~eel~~Qaq~---f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~L 698 (1160)
.-|++|++.+-++-.|+.++.++|.++... +-++.-.++..-+. +..-++-.|+++.--++.||.
T Consensus 198 ~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d-------~qkk~k~~~~Ekeel~~~Lq~----- 265 (596)
T KOG4360|consen 198 QLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVD-------LQKKIKYLRHEKEELDEHLQA----- 265 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHH-----
Confidence 459999999999999999999999876532 22333333333222 222234455666555555552
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 001085 699 SVQMASSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRD 746 (1160)
Q Consensus 699 S~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~ 746 (1160)
+-|+.+.+++ |.-||--+++.+.+|++.|.++|.-++-
T Consensus 266 ------~~da~~ql~a----E~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 266 ------YKDAQRQLTA----ELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred ------HHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3344555543 7788889999999999999999987654
No 177
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=78.68 E-value=6.3 Score=38.21 Aligned_cols=60 Identities=15% Similarity=0.268 Sum_probs=43.1
Q ss_pred cceeEEEEe-c-CCCcccccceeecchhhhhhhcCcceeeccccCC---CCCceeeEeeeeecccc
Q 001085 84 ERIYNFIVS-T-GLSKAGFVGEASIDFADYAEASKTSTVSLPLKYS---RSKAVLHVSIQRVQENV 144 (1160)
Q Consensus 84 EkiYKfVVS-m-GSSKSgiLGEasINlAdYaea~kp~tVSLPLK~c---nsGtVLHVtIQ~Lt~k~ 144 (1160)
.....|.|- . ...+..+||.+.|++++... .....+.+||... ..|+-|||.+++..+..
T Consensus 56 ~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~-~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 56 DESLEIVVKDYEKVGRNRLIGSATVSLQDLVS-EGLLEVTEPLLDSNGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred CCEEEEEEEECCCCCCCceEEEEEEEhhHccc-CCceEEEEeCcCCCCCcccEEEEEEEEEeCCCC
Confidence 344555554 2 34567899999999999886 4667788999643 34679999999876643
No 178
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.59 E-value=1.7e+02 Score=35.70 Aligned_cols=80 Identities=25% Similarity=0.296 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchhhhHhHHHHHHHHhhhhcccCCCCCCCCchhhhhhHHHHHhhhhhchhhHHHHHHH
Q 001085 499 DELETQMEQLALDYEILKQENHDISYKLEQSQLQEQLKMQYECSSIGNGSEPETQVESLENELKIKSKDLSDSLAIINEL 578 (1160)
Q Consensus 499 ~eLe~k~eqL~~dye~LkQEN~dis~KLEqsqlqe~l~~~~ecSs~~~~~~le~~iesle~elk~~~~e~sdSl~~I~~L 578 (1160)
..|++...|+..|++.++.|.-++.-.|...+-+. +|+|++++ .++.
T Consensus 103 ~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~----------------------~Lenem~k-----------a~Ed 149 (542)
T KOG0993|consen 103 QNLEQERTQLQQNEEKLEREVKALMELLSRGQYQL----------------------DLENEMDK-----------AKED 149 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh----------------------hhHHHHHH-----------HHhh
Confidence 34777778888888888888777765555433333 33444433 3455
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 001085 579 ETHIEGLASELKKQSREFSNFQATIKELESQIE 611 (1160)
Q Consensus 579 e~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq 611 (1160)
+.+++.+=--|++++-++++--+.++.++.||+
T Consensus 150 ~eKlrelv~pmekeI~elk~kl~~aE~~i~El~ 182 (542)
T KOG0993|consen 150 EEKLRELVTPMEKEINELKKKLAKAEQRIDELS 182 (542)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 555555555566666666655566666666665
No 179
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=78.43 E-value=66 Score=36.84 Aligned_cols=75 Identities=20% Similarity=0.307 Sum_probs=66.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHH
Q 001085 568 LSDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLE 642 (1160)
Q Consensus 568 ~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~ 642 (1160)
+.+-.+.-.+|+.+|++-..|++-...++..+|+.==..++|+.+++++|+++-..|-..+-.+..||.|+....
T Consensus 185 l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~~ 259 (267)
T PF10234_consen 185 LNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEYN 259 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444455667899999999999999999999999999999999999999999999999999999999999987655
No 180
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=78.33 E-value=3.8 Score=40.40 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=40.8
Q ss_pred ccchhhhhccccCCccccccceeEEEEe--cCCCcccccceeecchhhhh-hhcCcceeecccc
Q 001085 65 NSVYETVKFVREPKSGKISERIYNFIVS--TGLSKAGFVGEASIDFADYA-EASKTSTVSLPLK 125 (1160)
Q Consensus 65 dpIyETvkl~qD~kTkk~~EkiYKfVVS--mGSSKSgiLGEasINlAdYa-ea~kp~tVSLPLK 125 (1160)
+|+|.-..........++.+.-.+|.|. -+.++..+||++.|.|++.- ..-.++++.|||+
T Consensus 64 nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 64 NPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred CCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 6666544333223334445555666664 24668889999999999883 3357899999986
No 181
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=78.21 E-value=7.4 Score=36.76 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=39.0
Q ss_pred ceeEEEEec-CCCcccccceeecchhhhhhhcCcceeeccccCCCCCceeeEeee
Q 001085 85 RIYNFIVST-GLSKAGFVGEASIDFADYAEASKTSTVSLPLKYSRSKAVLHVSIQ 138 (1160)
Q Consensus 85 kiYKfVVSm-GSSKSgiLGEasINlAdYaea~kp~tVSLPLK~cnsGtVLHVtIQ 138 (1160)
...+|.|-- +..+..+||.+.|++++.... .....-+||..+.+|-| |+.+|
T Consensus 68 ~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~-~~~~~w~~L~~~~~G~~-~~~~~ 120 (121)
T cd08391 68 QELEIELFDEDPDKDDFLGRLSIDLGSVEKK-GFIDEWLPLEDVKSGRL-HLKLE 120 (121)
T ss_pred CEEEEEEEecCCCCCCcEEEEEEEHHHhccc-CccceEEECcCCCCceE-EEEEe
Confidence 355555542 233888999999999999864 44678899999988877 88776
No 182
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=78.20 E-value=56 Score=34.23 Aligned_cols=29 Identities=45% Similarity=0.589 Sum_probs=18.5
Q ss_pred hHHHHHHHhhhhhHHHHHHhhhHHHHHHH
Q 001085 397 NLRLQLQKTQESNAELILAVQDLDEMLEQ 425 (1160)
Q Consensus 397 NL~LQLqKTQESN~ELvlaVqDLEEmLEQ 425 (1160)
+++-++..+|+.-..|.-.++++.+++++
T Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 190 (191)
T PF04156_consen 162 ELRSQLERLQENLQQLEEKIQELQELLEQ 190 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666666666666666666666666654
No 183
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=78.08 E-value=35 Score=39.21 Aligned_cols=104 Identities=27% Similarity=0.334 Sum_probs=62.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHH
Q 001085 751 KLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELA 830 (1160)
Q Consensus 751 Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~ 830 (1160)
||++|..||+-.++...|--.-|+..-.-|+-+++--++. +.++..|.-||..|++..+.-+.-|
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~e-----------k~e~s~LkREnq~l~e~c~~lek~r---- 83 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEE-----------KNEYSALKRENQSLMESCENLEKTR---- 83 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----------hhhhhhhhhhhhhHHHHHHHHHHHH----
Confidence 7888888888877777766556665555555544433322 3344455556666666443333222
Q ss_pred HhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHh
Q 001085 831 QMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQRIQ 875 (1160)
Q Consensus 831 ~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~ 875 (1160)
.....-|+-.....+-|+..++..|+..+..-.||.+++
T Consensus 84 ------qKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~K 122 (307)
T PF10481_consen 84 ------QKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCK 122 (307)
T ss_pred ------HHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233345566666777777777777777777666665543
No 184
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=77.83 E-value=5.5 Score=34.07 Aligned_cols=41 Identities=32% Similarity=0.396 Sum_probs=32.0
Q ss_pred HHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 001085 890 SELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKK 930 (1160)
Q Consensus 890 se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kk 930 (1160)
-+-+.||.+|+.||.-...=..|++.|+.+|..|++.+..|
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~~k 45 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQMK 45 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 34567777777777766666778999999999999988654
No 185
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=77.63 E-value=80 Score=33.96 Aligned_cols=45 Identities=18% Similarity=0.298 Sum_probs=20.0
Q ss_pred HHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhh
Q 001085 770 LKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKS 814 (1160)
Q Consensus 770 ~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~ 814 (1160)
.-.++...+.+++-.+.-+..+.++...+..++..+...+.....
T Consensus 11 ~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~ 55 (221)
T PF04012_consen 11 KANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKR 55 (221)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555554444444444444444444444444444333333
No 186
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=77.29 E-value=55 Score=33.31 Aligned_cols=48 Identities=21% Similarity=0.262 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHH
Q 001085 855 STIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNL 902 (1160)
Q Consensus 855 ~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~l 902 (1160)
..+..++.+.+......+.+-.+=-||...+.-|+.+|.-+|.-|...
T Consensus 68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQ 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555556666677888888999999998888877654
No 187
>PRK10698 phage shock protein PspA; Provisional
Probab=77.14 E-value=1.2e+02 Score=33.42 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHH
Q 001085 709 NEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQL 780 (1160)
Q Consensus 709 nE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql 780 (1160)
+|-|+..|+.+--..-.+...|+..+......+..++. .+..|...|.........|..+...+..+.
T Consensus 83 ~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~----~l~~L~~ki~eak~k~~~L~aR~~~A~a~~ 150 (222)
T PRK10698 83 KEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKK----EIGELENKLSETRARQQALMLRHQAASSSR 150 (222)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777766666666666666666666665555555 555555555554444455555555444443
No 188
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=76.85 E-value=40 Score=39.84 Aligned_cols=135 Identities=16% Similarity=0.248 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHH
Q 001085 688 AERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIE 767 (1160)
Q Consensus 688 ~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e 767 (1160)
+.--.-|+.|..-|+-=+..... .+=..=+..+|..+..++..+-.+...|..|..+...-+..+..-=...+.+++
T Consensus 193 ~~eWklEvERV~PqLKv~~~~d~---kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle 269 (359)
T PF10498_consen 193 PAEWKLEVERVLPQLKVTIRADA---KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLE 269 (359)
T ss_pred HHHHHHHHHHHhhhheeeccCCc---chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444566665555511111111 222334556677777777777777777777666544444444333334455666
Q ss_pred HHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHh
Q 001085 768 QMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRA 846 (1160)
Q Consensus 768 ~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~ 846 (1160)
.++.+.....++|...+ .+.+.+-.-+..++.+.+.|++ +|+++|.-+++....+.++
T Consensus 270 ~l~~eYr~~~~~ls~~~-----------~~y~~~s~~V~~~t~~L~~Ise----------eLe~vK~emeerg~~mtD~ 327 (359)
T PF10498_consen 270 PLIQEYRSAQDELSEVQ-----------EKYKQASEGVSERTRELAEISE----------ELEQVKQEMEERGSSMTDG 327 (359)
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHhhHHHHHHHHHHHHHH----------HHHHHHHHHHHhcCCCCCC
Confidence 66666666666554333 3334444444444444445554 4455555555544444433
No 189
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.83 E-value=2.1e+02 Score=35.97 Aligned_cols=131 Identities=22% Similarity=0.294 Sum_probs=75.4
Q ss_pred HHHHHhhccChhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhHhHHHHHHHHh-hhhccc
Q 001085 464 LEELVKEHRDVKETYLLEQKIMDLYSEIEIYRRDKDELETQMEQLALDYEILKQENHDISYKLEQSQLQEQLK-MQYECS 542 (1160)
Q Consensus 464 l~~l~ke~~d~kE~~~L~~KI~eL~~ele~y~~~~~eLe~k~eqL~~dye~LkQEN~dis~KLEqsqlqe~l~-~~~ecS 542 (1160)
.-+.+++..+.+|.++++ +|+.|++++..|.+++.+|..+. ++...++. ++ +|-
T Consensus 314 ~IerLkeqr~rderE~~E--------eIe~~~ke~kdLkEkv~~lq~~l----------------~eke~sl~dlk-eha 368 (654)
T KOG4809|consen 314 IIERLKEQRERDERERLE--------EIESFRKENKDLKEKVNALQAEL----------------TEKESSLIDLK-EHA 368 (654)
T ss_pred HHHHhcchhhhhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHH-HHH
Confidence 334455555555555443 79999999999999999885311 11111111 11 121
Q ss_pred CCCCCCCCchhhhhhHHHHHhhhhhchhhH-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 001085 543 SIGNGSEPETQVESLENELKIKSKDLSDSL-AIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQS 621 (1160)
Q Consensus 543 s~~~~~~le~~iesle~elk~~~~e~sdSl-~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~ 621 (1160)
+ |+ +++.++..+..+|+== +++-.|+.-+....||+.+
T Consensus 369 s---------------------------sLas~glk~ds~Lk~leIa--------------lEqkkEec~kme~qLkkAh 407 (654)
T KOG4809|consen 369 S---------------------------SLASAGLKRDSKLKSLEIA--------------LEQKKEECSKMEAQLKKAH 407 (654)
T ss_pred H---------------------------HHHHHhhhhhhhhhHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 2 33 3777777777777733 3444677777888888885
Q ss_pred hhhhhHH------HhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001085 622 KGYSDSL------ATIKELEAYIKNLEEELEKQAQVYEADLEVVTR 661 (1160)
Q Consensus 622 ~e~S~~l------~~i~~Le~qv~sl~eel~~Qaq~f~~dl~a~~~ 661 (1160)
+..-|+. ..|..|+....- ++++-+++|..+..+=.|+.
T Consensus 408 ~~~ddar~~pe~~d~i~~le~e~~~-y~de~~kaqaevdrlLeilk 452 (654)
T KOG4809|consen 408 NIEDDARMNPEFADQIKQLEKEASY-YRDECGKAQAEVDRLLEILK 452 (654)
T ss_pred HhhHhhhcChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 5443332 234444444332 34555677777777655543
No 190
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=76.81 E-value=45 Score=38.62 Aligned_cols=131 Identities=25% Similarity=0.318 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHhHHHHhHHHHHHHHHHhhhhhhhHHHHhccccccC-
Q 001085 296 EKLKSELVALARQADLSELELQTLRKQIVKESKRAQDLSREVISLKEEKDLLKLDCEKLKTFQKRMDEAKVRNKLHFQG- 374 (1160)
Q Consensus 296 EkLKsE~~sL~Rqad~s~lELQtLRKQi~kEsKrgqdLs~EVs~Lk~ERD~LK~E~EqLKs~~k~~~ea~~~~rl~~e~- 374 (1160)
..|-.|=.+|.=+.|.+.-.|..+-..++.--+--.+..+++--+|..+|.|+.|+..|+......++.-..+.+-+.+
T Consensus 101 aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~ 180 (302)
T PF09738_consen 101 AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVPD 180 (302)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCC
Confidence 3455555566666666666555555554444444445556666666666666666666666655433322222221111
Q ss_pred ---CC------------chHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhhHHHHHHhhhHHHHHHHHhh
Q 001085 375 ---GD------------PWVLLEEIRQELSYEKDLNANLRLQLQKTQESNAELILAVQDLDEMLEQKNR 428 (1160)
Q Consensus 375 ---~D------------~~~~leELk~EL~~EKelNaNL~LQLqKTQESN~ELvlaVqDLEEmLEQk~~ 428 (1160)
|| +-.+-.|--+-|.-- -+..|-+.|+|.=+.+-+|+.-|+.|-..|++.+.
T Consensus 181 ~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~a--G~g~LDvRLkKl~~eke~L~~qv~klk~qLee~~~ 247 (302)
T PF09738_consen 181 ATNGDTSDEPNNVGHPKRALVSQEAAQLLESA--GDGSLDVRLKKLADEKEELLEQVRKLKLQLEERQS 247 (302)
T ss_pred CCCCccccCccccCCCcccccchhhhhhhccc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 112222222333322 25678889999999999999999999999987554
No 191
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=76.53 E-value=1.2e+02 Score=39.13 Aligned_cols=31 Identities=26% Similarity=0.253 Sum_probs=21.3
Q ss_pred HHHhHHHHhhhhhhhHHHHHHHHHHHHhhhh
Q 001085 896 KVQCHNLKQALVEDESEKEKLRKQAFQLKGD 926 (1160)
Q Consensus 896 ~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~ 926 (1160)
..|...++..|.+.-.+...|.++|..++..
T Consensus 684 ~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 684 ESQKRTIKEILKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566667777777777777777777766654
No 192
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=76.35 E-value=72 Score=33.40 Aligned_cols=88 Identities=23% Similarity=0.348 Sum_probs=54.1
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHH
Q 001085 838 EYELLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLR 917 (1160)
Q Consensus 838 ~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~ 917 (1160)
+....++....+.+.+...++-+..+...........+.........+..+...+..+...+.+|...+.+...+-++++
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~ 164 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELR 164 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555566666666666666655555555666666666666777777777777776666666666666666
Q ss_pred HHHHHhhh
Q 001085 918 KQAFQLKG 925 (1160)
Q Consensus 918 kqv~~lk~ 925 (1160)
.++.++..
T Consensus 165 ~~~~~~~~ 172 (191)
T PF04156_consen 165 SQLERLQE 172 (191)
T ss_pred HHHHHHHH
Confidence 66666633
No 193
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=76.20 E-value=1.3e+02 Score=33.14 Aligned_cols=196 Identities=20% Similarity=0.257 Sum_probs=94.2
Q ss_pred HHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhH
Q 001085 648 QAQVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQK 727 (1160)
Q Consensus 648 Qaq~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~ 727 (1160)
++..|..+.+.......++.+.+..| ......+++++..+.......+..-.++....+ -..-
T Consensus 25 ~al~~L~~~~~~~~~~~~~~~~i~~a-----------P~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eL------eq~l 87 (240)
T PF12795_consen 25 QALSFLDEIKKQKKRAAEYQKQIDQA-----------PKEIRELQKELEALKSQDAPSKEILANLSLEEL------EQRL 87 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHhhhccccccccCcccCCHHHH------HHHH
Confidence 34445555555555555555555444 334456777777775543334444444433322 2222
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHh-----hhhhhHhhhHHHHHHHHHH
Q 001085 728 RHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQ-----KKHDEEDSGALSLEIQQLK 802 (1160)
Q Consensus 728 ~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~-----~~~~~~~~~~~~~eiq~l~ 802 (1160)
......|..+...|..... ++.++.+....-...|-.....++....+|... ....+.....+..+...|+
T Consensus 88 ~~~~~~L~~~q~~l~~~~~----~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~ 163 (240)
T PF12795_consen 88 SQEQAQLQELQEQLQQENS----QLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALE 163 (240)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHH
Confidence 2223333333333333333 566666666666666666666666666666655 3333445556666666666
Q ss_pred HhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHH-HHHHhhHHHHHHH
Q 001085 803 ADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVK-KEAESSVEEVQRI 874 (1160)
Q Consensus 803 ~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k-~eae~~~~el~~~ 874 (1160)
+++..+..+-..... +.+|- +.-...+..-++....++.-|...|...+ .++|..+++..++
T Consensus 164 ~~~~~le~el~s~~~--------rq~L~--~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~eae~~~~~a~~~ 226 (240)
T PF12795_consen 164 AQIEMLEQELLSNNN--------RQELL--QLQRDLLKARIQRLQQQLQALQNLLNQKRRQEAEQAVEEAEQL 226 (240)
T ss_pred HHHHHHHHHHHCcHH--------HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666544433322221 22332 22233333444444444444444444433 4444444444433
No 194
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.98 E-value=2.1e+02 Score=35.62 Aligned_cols=202 Identities=18% Similarity=0.152 Sum_probs=98.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHH---HHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhh----
Q 001085 720 ASELRMQKRHLEEMINKASEEALSLRDDYETKLC---QLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSG---- 792 (1160)
Q Consensus 720 ~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~---~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~---- 792 (1160)
.++||.++..+--+|..|-..+..+..+- +++. .+......+..-+--..-|.+.+.+++...+.-+-...-
T Consensus 62 l~~lr~~~~~~~~~l~~vt~~~~ql~kEK-~~~~m~n~~~~e~~~k~~~~kdik~E~ea~~k~l~q~~~d~l~~~~~fle 140 (613)
T KOG0992|consen 62 LCELRSQCNELTTKLSTVTQGLQQLQKEK-TRVDMTNEILLESVRKAQTQKDIKCEEEAKIKNLQQIEIDKLKNLLSFLE 140 (613)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 47889999888889988888888776643 2332 222333333333333334444444444333322222111
Q ss_pred ----HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHH-HHHHHHHHHH--
Q 001085 793 ----ALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELES-TIALVKKEAE-- 865 (1160)
Q Consensus 793 ----~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~-~~~~~k~eae-- 865 (1160)
++..=..+-+-.++-|+.+-..+...--.-+.++.++++.+-++-.++-+++..+....+-+. .+.-+|-+-+
T Consensus 141 ~Ek~d~e~~m~~~~~q~Esls~~le~~~~~~~~~~kl~ie~e~~~h~~qq~e~~l~t~~a~~e~~nrh~~erlk~~~~s~ 220 (613)
T KOG0992|consen 141 QEKVDREGLMRQQTQQIESLSEELERLRPIESVAEKLRIELEQLRHSTQQEENLLTTTLAAVEEENRHLKERLKIVEESR 220 (613)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 111111122223333333333344444455667777777777777777666655543322211 1111111111
Q ss_pred -hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHh
Q 001085 866 -SSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQL 923 (1160)
Q Consensus 866 -~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~l 923 (1160)
.++.+|+.=+. =-+-...-..|--+++.|+.|++..+-|.|..-.+-+++|.++..+
T Consensus 221 ~e~l~kl~~EqQ-lq~~~~ehkllee~~~rl~~~~s~VegS~S~~~l~~ek~r~~lee~ 278 (613)
T KOG0992|consen 221 LESLGKLNSEQQ-LQALIREHKLLEEHLERLHLQLSDVEGSWSGQNLALEKQRSRLEEQ 278 (613)
T ss_pred HHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 11222222211 1111222344555677788888888878777766666666555443
No 195
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=75.73 E-value=69 Score=32.71 Aligned_cols=93 Identities=24% Similarity=0.399 Sum_probs=53.3
Q ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHH----Hhh
Q 001085 849 ERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAF----QLK 924 (1160)
Q Consensus 849 e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~----~lk 924 (1160)
.+..|..++..+..+.+.....+.+++.--.+.+..+..++.....+..++..+...+-...-|-.+++..+. |..
T Consensus 53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~ 132 (151)
T PF11559_consen 53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYE 132 (151)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555666666666666666666665555555555554443 445
Q ss_pred hhhhhhHHHHHHHHHhh
Q 001085 925 GDLKKKEDALNSLEKKL 941 (1160)
Q Consensus 925 ~~l~kke~~~~~~ek~~ 941 (1160)
-|++||+-++..+-.++
T Consensus 133 ~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 133 HELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 67777777777665554
No 196
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=75.05 E-value=93 Score=34.45 Aligned_cols=109 Identities=20% Similarity=0.312 Sum_probs=66.2
Q ss_pred HHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHH---Hh
Q 001085 828 ELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNL---KQ 904 (1160)
Q Consensus 828 ~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~l---k~ 904 (1160)
++-.+|..+.++.+.+.........|...+..---+.+....||.+.++-.+=--.-++.|..|+..||.....+ +.
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~ 111 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKR 111 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchh
Confidence 444556666666666666666666666666554456666667776655433222233677777777777777765 11
Q ss_pred h---hhh----------hhHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 001085 905 A---LVE----------DESEKEKLRKQAFQLKGDLKKKEDALNS 936 (1160)
Q Consensus 905 ~---l~~----------~e~eke~l~kqv~~lk~~l~kke~~~~~ 936 (1160)
. |.. ....-..|+.+|..|+.+|..-......
T Consensus 112 ~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~ 156 (202)
T PF06818_consen 112 QCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREE 156 (202)
T ss_pred hhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHH
Confidence 1 111 1223556889999999999865554443
No 197
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=75.01 E-value=2.1e+02 Score=35.16 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHH
Q 001085 611 EALGNELKEQSKGYSDSLATIKELEAYIKNLE 642 (1160)
Q Consensus 611 q~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~ 642 (1160)
.-+...|++.-.+|.-++.+--+|+.+...|.
T Consensus 326 eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll 357 (488)
T PF06548_consen 326 EELDDALQRAMEGHARMLEQYADLQEKHNDLL 357 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777778777777777776665554
No 198
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=74.41 E-value=11 Score=36.64 Aligned_cols=56 Identities=18% Similarity=0.267 Sum_probs=38.7
Q ss_pred ceeEEEEec--CCCcccccceeecchhhhhhhcCc-----ceeeccccC----CCCCceeeEeeeee
Q 001085 85 RIYNFIVST--GLSKAGFVGEASIDFADYAEASKT-----STVSLPLKY----SRSKAVLHVSIQRV 140 (1160)
Q Consensus 85 kiYKfVVSm--GSSKSgiLGEasINlAdYaea~kp-----~tVSLPLK~----cnsGtVLHVtIQ~L 140 (1160)
+...|.|-- ..++..+||.+.|.+++......+ ....+||.+ ..++..|||++..|
T Consensus 67 ~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 67 HRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 344566552 235678999999999999876543 234667763 45677899998765
No 199
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=73.37 E-value=40 Score=35.08 Aligned_cols=89 Identities=27% Similarity=0.348 Sum_probs=70.4
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHhHHHHhhhhh-hhHHHHHHHHH
Q 001085 843 IQRANRERDELESTIALVKKEAESSVEEVQRIQRIE--DEKEAAVELLKSELELLKVQCHNLKQALVE-DESEKEKLRKQ 919 (1160)
Q Consensus 843 ~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~k--deke~~~~~l~se~~~l~~q~~~lk~~l~~-~e~eke~l~kq 919 (1160)
+..-..++.+|..+++.++.+......||..+.+.. +|-...|..|..++..+......|+..-.. ...|++++.+.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~ 153 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKE 153 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 344456688888888899999999999999988854 667788899999999999999998874332 46678888888
Q ss_pred HHHhhhhhhhhH
Q 001085 920 AFQLKGDLKKKE 931 (1160)
Q Consensus 920 v~~lk~~l~kke 931 (1160)
...+.++.+++.
T Consensus 154 ~~~~~k~w~kRK 165 (169)
T PF07106_consen 154 YKKWRKEWKKRK 165 (169)
T ss_pred HHHHHHHHHHHH
Confidence 888888877764
No 200
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=72.92 E-value=1.5e+02 Score=32.48 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhh
Q 001085 794 LSLEIQQLKADTEKLMMDNKSLS 816 (1160)
Q Consensus 794 ~~~eiq~l~~~~~~l~~e~~~l~ 816 (1160)
+...++.++++.+.|......+.
T Consensus 25 ~~~~l~~~~~~~~~l~~~i~~~l 47 (302)
T PF10186_consen 25 LRSELQQLKEENEELRRRIEEIL 47 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 201
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=72.55 E-value=2.6e+02 Score=34.98 Aligned_cols=80 Identities=19% Similarity=0.342 Sum_probs=61.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHH
Q 001085 568 LSDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEK 647 (1160)
Q Consensus 568 ~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~~ 647 (1160)
++.+-+....+..+|+.|..-++.--..-..+..++.++...+..++.+|-..+.+|-+ +|+.+..++.+|-+.|.+
T Consensus 429 lQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~---QLs~MSEHLasmNeqL~~ 505 (518)
T PF10212_consen 429 LQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEE---QLSMMSEHLASMNEQLAK 505 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHH
Confidence 44555566667777777776666665666677788888888889999999999998865 667788899999999998
Q ss_pred HHH
Q 001085 648 QAQ 650 (1160)
Q Consensus 648 Qaq 650 (1160)
|..
T Consensus 506 Q~e 508 (518)
T PF10212_consen 506 QRE 508 (518)
T ss_pred HHH
Confidence 873
No 202
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=72.47 E-value=1.5e+02 Score=36.88 Aligned_cols=106 Identities=17% Similarity=0.227 Sum_probs=67.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhh
Q 001085 754 QLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMK 833 (1160)
Q Consensus 754 ~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k 833 (1160)
.+..+|+..+.++-.|..+|..|.+++--+.+. +.-|..+|--++.++.-+.+|+..+- .-|..+|
T Consensus 202 ~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee----~skLlsql~d~qkk~k~~~~Ekeel~----------~~Lq~~~ 267 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEELQSKTKELSRQQEE----NSKLLSQLVDLQKKIKYLRHEKEELD----------EHLQAYK 267 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHH----------HHHHHHH
Confidence 446788888888888999999998888554432 23334444444444444444433222 2233333
Q ss_pred hhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhH
Q 001085 834 TTVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIEDE 880 (1160)
Q Consensus 834 ~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kde 880 (1160)
.+- ..-++|-.|++.++|-.+..-..+.+||+.+|+--.=
T Consensus 268 da~-------~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~~p 307 (596)
T KOG4360|consen 268 DAQ-------RQLTAELEELEDKYAECMQMLHEAEEELKCLRSCDAP 307 (596)
T ss_pred hhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 222 2345677899999999998888899999999874433
No 203
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=72.32 E-value=78 Score=32.28 Aligned_cols=81 Identities=28% Similarity=0.343 Sum_probs=54.8
Q ss_pred hhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhh
Q 001085 848 RERDELESTIALVKKEAESSVEEVQRIQRIEDEK---EAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLK 924 (1160)
Q Consensus 848 ~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdek---e~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk 924 (1160)
.|+.-|...++.+..+-....+||-++....|+. ...+..|+.++..|...|+.+=..|-+..-+-+.|+--|..||
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444333 3557788999999999999999999999999999999988888
Q ss_pred hhhh
Q 001085 925 GDLK 928 (1160)
Q Consensus 925 ~~l~ 928 (1160)
.=.+
T Consensus 110 ~myr 113 (120)
T PF12325_consen 110 EMYR 113 (120)
T ss_pred HHHH
Confidence 6554
No 204
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=72.14 E-value=12 Score=36.10 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=52.3
Q ss_pred CCccccccccccccCccccCccchhhhhccccCCccccccceeEEEEe--cCCCcccccceeecchhhhhhhcCcceeec
Q 001085 45 GKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVS--TGLSKAGFVGEASIDFADYAEASKTSTVSL 122 (1160)
Q Consensus 45 GKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVS--mGSSKSgiLGEasINlAdYaea~kp~tVSL 122 (1160)
|+...||. ..-.+-+..|...++=.+ .++ ....+|-|- -..++..++|.+.|++++... -.+..+.+
T Consensus 31 ~~~~~kT~-~~~~t~nP~Wne~f~f~v---~~~------~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~-~~~~~~~~ 99 (121)
T cd04042 31 GKTVYKSK-TIYKNLNPVWDEKFTLPI---EDV------TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLEL-NKPTEVKL 99 (121)
T ss_pred CEEEEEee-eccCCCCCccceeEEEEe---cCC------CCeEEEEEEeCCCCCCCcceEEEEEEHHHcCC-CCCeEEEE
Confidence 44555443 333445666664432221 121 345666665 244578899999999999875 67888999
Q ss_pred cccCCCC---CceeeEeeee
Q 001085 123 PLKYSRS---KAVLHVSIQR 139 (1160)
Q Consensus 123 PLK~cns---GtVLHVtIQ~ 139 (1160)
||.+-+. ...|||.+.+
T Consensus 100 ~L~~~~~~~~~G~l~l~~~~ 119 (121)
T cd04042 100 KLEDPNSDEDLGYISLVVTL 119 (121)
T ss_pred ECCCCCCccCceEEEEEEEE
Confidence 9975443 4567887765
No 205
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=71.97 E-value=3.6e+02 Score=36.41 Aligned_cols=153 Identities=16% Similarity=0.276 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHH
Q 001085 571 SLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQAQ 650 (1160)
Q Consensus 571 Sl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~~Qaq 650 (1160)
..-.|+..+..+..+++.++.+...-...+..+.+.+.+++....+-..|..++-++-..+..+-..+..++.++..-.
T Consensus 286 ~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~- 364 (1074)
T KOG0250|consen 286 QEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIE- 364 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3345555666666666666665544444444444444445544455555555555555555555444444443333221
Q ss_pred HHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHH
Q 001085 651 VYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHL 730 (1160)
Q Consensus 651 ~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~L 730 (1160)
.++..+.......++.+.-+++.+ ++.+.++ .+++|+-...--.||-.++.+...|
T Consensus 365 ---n~i~~~k~~~d~l~k~I~~~~~~~-----~~~~~~~----------------~~e~e~k~~~L~~evek~e~~~~~L 420 (1074)
T KOG0250|consen 365 ---NSIRKLKKEVDRLEKQIADLEKQT-----NNELGSE----------------LEERENKLEQLKKEVEKLEEQINSL 420 (1074)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHH-----Hhhhhhh----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222222222222221 2222222 2334444444444666777788888
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 001085 731 EEMINKASEEALSLRDDY 748 (1160)
Q Consensus 731 Ee~L~~a~~el~~~~~~~ 748 (1160)
.+.++.+..+++....+.
T Consensus 421 ~~e~~~~~~~~~~~~ee~ 438 (1074)
T KOG0250|consen 421 REELNEVKEKAKEEEEEK 438 (1074)
T ss_pred HHHHHHHHHHHHHhHHHH
Confidence 888888888887766643
No 206
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=71.70 E-value=1.7e+02 Score=32.93 Aligned_cols=115 Identities=30% Similarity=0.380 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q 001085 605 ELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQAQVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKN 684 (1160)
Q Consensus 605 ~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~~Qaq~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~n 684 (1160)
.|++.|...+.+.++.......+-.++..|+.+...++++-. ..+.++..|+++..+.+...
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~------------------~Le~k~~eaee~~~rL~~~~ 70 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAE------------------ELEQKRQEAEEEKQRLEEEA 70 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHH
Confidence 455556666677777667666777777777776666653211 22223333333333333333
Q ss_pred hhHHH---HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001085 685 ANTAE---RLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEA 741 (1160)
Q Consensus 685 a~~~e---~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el 741 (1160)
.-+.+ .|..++..+...+....++.+. ...|+..|+.+.....+.+..+...|
T Consensus 71 ~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~----ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 71 EMQEEEKEQLEQELREAEAEIARLEEESER----KEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222 5555555555555444443332 33467777777766667777776666
No 207
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=71.36 E-value=4.1e+02 Score=36.76 Aligned_cols=22 Identities=32% Similarity=0.521 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 001085 574 IINELETHIEGLASELKKQSRE 595 (1160)
Q Consensus 574 ~I~~Le~qi~~LE~Ele~Q~~~ 595 (1160)
.|.+|+..|..|..++......
T Consensus 743 ri~el~~~IaeL~~~i~~l~~~ 764 (1353)
T TIGR02680 743 RIAELDARLAAVDDELAELARE 764 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666555444333
No 208
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=71.29 E-value=3e+02 Score=35.12 Aligned_cols=68 Identities=10% Similarity=0.086 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHH---HHHHHHhhhhhhhhHHHHHHHHHhhhhcc
Q 001085 878 EDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKL---RKQAFQLKGDLKKKEDALNSLEKKLKDSN 945 (1160)
Q Consensus 878 kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l---~kqv~~lk~~l~kke~~~~~~ek~~~~s~ 945 (1160)
..|...++..+..++..++.+...|...+..-+..-..+ ..+..+|+++..-.++....+-.++++..
T Consensus 333 ~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 333 RSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555544444433333222 55677888888888888888888886653
No 209
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=70.84 E-value=45 Score=38.53 Aligned_cols=72 Identities=21% Similarity=0.198 Sum_probs=30.2
Q ss_pred HHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHH--HHHHHHHhhh-hccccCccCcCccccccCCCCCCCCCChh
Q 001085 895 LKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKED--ALNSLEKKLK-DSNRRASVSDGTRTTLRNNKSAPVSQGSK 971 (1160)
Q Consensus 895 l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~--~~~~~ek~~~-~s~~~~~~~~~t~~~~~n~~~~~~~~~s~ 971 (1160)
.-..++.++.-+.+-..|.+-+..|+......|.+-.. .++.+ |. .-+|. =||-+..|=....++|-.-.
T Consensus 97 ~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~n~~---F~I~hdG~----fGTINGlRLGrl~~~~V~W~ 169 (314)
T PF04111_consen 97 YWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNVYNDT---FHIWHDGP----FGTINGLRLGRLPNVPVEWN 169 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TTTTT-----EEEETT----EEEETTEEE--BTTB---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhce---eeEeecCC----eeeECCeeeccCCCCCCChH
Confidence 34445555555555555555555555555555543322 11111 10 01233 25666665555555555555
Q ss_pred HH
Q 001085 972 EI 973 (1160)
Q Consensus 972 ~~ 973 (1160)
||
T Consensus 170 EI 171 (314)
T PF04111_consen 170 EI 171 (314)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 210
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=70.73 E-value=56 Score=31.62 Aligned_cols=71 Identities=18% Similarity=0.259 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHH
Q 001085 579 ETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQA 649 (1160)
Q Consensus 579 e~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~~Qa 649 (1160)
.+++.+++.+++.+..--......+-.+++.+.++..+.-+....|+++......|...++.|...+.++.
T Consensus 2 ~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~ 72 (96)
T PF08647_consen 2 QTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSS 72 (96)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Confidence 45666777777777666667777777777777777788888888888888888888888888876666655
No 211
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=70.41 E-value=10 Score=37.07 Aligned_cols=56 Identities=21% Similarity=0.310 Sum_probs=42.0
Q ss_pred ccceeEEEEecC--CCcccccceeecchhhhhhh-cCcceeeccccCCCCCceeeEeeeeec
Q 001085 83 SERIYNFIVSTG--LSKAGFVGEASIDFADYAEA-SKTSTVSLPLKYSRSKAVLHVSIQRVQ 141 (1160)
Q Consensus 83 ~EkiYKfVVSmG--SSKSgiLGEasINlAdYaea-~kp~tVSLPLK~cnsGtVLHVtIQ~Lt 141 (1160)
+.+...|.|--. ..+..++|.+.|.|+++... ......-+||. ..|.| ||.|++-+
T Consensus 72 ~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l-~l~~~~~~ 130 (132)
T cd04014 72 NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKL-HVKIELKG 130 (132)
T ss_pred CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEE-EEEEEEec
Confidence 456788887532 24568999999999999985 56678899998 34655 99888743
No 212
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=70.34 E-value=66 Score=31.16 Aligned_cols=95 Identities=21% Similarity=0.259 Sum_probs=69.1
Q ss_pred CchhhhhhHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 001085 550 PETQVESLENELKIKSKDLSDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLA 629 (1160)
Q Consensus 550 le~~iesle~elk~~~~e~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~ 629 (1160)
|.+++.+++..-+.+......-..-+..++..+.+|+.|..+.-+.+.....-.++|.-++-++..-+ ...++...
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~----~Ks~~~i~ 76 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQL----SKSSELIE 76 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHhHHHHH
Confidence 34678888888888888887777888999999999999999999999888888888877765444433 33444555
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 001085 630 TIKELEAYIKNLEEELEKQ 648 (1160)
Q Consensus 630 ~i~~Le~qv~sl~eel~~Q 648 (1160)
.+.++|....+...++++|
T Consensus 77 ~L~~~E~~~~~~l~~~Eke 95 (96)
T PF08647_consen 77 QLKETEKEFVRKLKNLEKE 95 (96)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 5555666655555555543
No 213
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=70.24 E-value=1.5e+02 Score=31.21 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 001085 716 ALAEASELRMQKRHLEEMINKASEEALSLR 745 (1160)
Q Consensus 716 A~~E~seLr~~~~~LEe~L~~a~~el~~~~ 745 (1160)
.-.+++.+|..+..|...+.++...|+...
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke 33 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQLRQKE 33 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999988888743
No 214
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=70.01 E-value=2.6e+02 Score=33.97 Aligned_cols=120 Identities=26% Similarity=0.335 Sum_probs=70.3
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhh
Q 001085 737 ASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLS 816 (1160)
Q Consensus 737 a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~ 816 (1160)
+|....-++.||-.-++-+.-.|.+...|.-|--+|.-....+++. +..-...-..|+|.|-+-++.| |+.|.
T Consensus 408 vnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEa----erqaLRqCQrEnQELnaHNQEL---nnRLa 480 (593)
T KOG4807|consen 408 VNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEA----ERQALRQCQRENQELNAHNQEL---NNRLA 480 (593)
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhHHHHHHHHHH---hhHHH
Confidence 4455555788888888888888888777777777776666666533 2222233345566666555544 34555
Q ss_pred HHHHHHHhHHHHHHH----------hhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHh
Q 001085 817 EEAEQKESLRVELAQ----------MKTTVKEYELLIQRANRERDELESTIALVKKEAES 866 (1160)
Q Consensus 817 e~~e~~e~~~~~~~~----------~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~ 866 (1160)
.+|.+ ||+=|.- --++..|.|.+|.-...|+.-|..+|+++|+|..+
T Consensus 481 aEItr---LRtlltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLkDELQt 537 (593)
T KOG4807|consen 481 AEITR---LRTLLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDELQT 537 (593)
T ss_pred HHHHH---HHHHhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 54432 2222210 12355678888877777776666666666655443
No 215
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=70.00 E-value=1.7e+02 Score=31.92 Aligned_cols=64 Identities=17% Similarity=0.208 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 001085 709 NEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNL 776 (1160)
Q Consensus 709 nE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~ 776 (1160)
+|-|+..|+.+.-....+...|+..+......+..++. +|..|..++.........|..+...+
T Consensus 83 ~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~----~l~~L~~ki~~~k~k~~~l~ar~~~A 146 (219)
T TIGR02977 83 REDLARAALIEKQKAQELAEALERELAAVEETLAKLQE----DIAKLQAKLAEARARQKALAIRHQAA 146 (219)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777776666666666666666666555555555 55556555555444444444444433
No 216
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=69.99 E-value=8.6 Score=36.50 Aligned_cols=75 Identities=15% Similarity=0.196 Sum_probs=47.0
Q ss_pred cccCccccCccchhhhhccccCCccccccceeEEEEec--CCCcccccceeecchhhhhhhcCcceeeccccC--CCCCc
Q 001085 56 IEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVST--GLSKAGFVGEASIDFADYAEASKTSTVSLPLKY--SRSKA 131 (1160)
Q Consensus 56 VrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVSm--GSSKSgiLGEasINlAdYaea~kp~tVSLPLK~--cnsGt 131 (1160)
-.+-++.|...++=.+. + ......|-|-. +..+..+||.+.|++++.+.......+..||.. -..|
T Consensus 45 ~~~~~P~Wne~~~~~v~----~-----~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G- 114 (124)
T cd04044 45 KDTSNPVWNETKYILVN----S-----LTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVG- 114 (124)
T ss_pred cCCCCCcceEEEEEEeC----C-----CCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCCccce-
Confidence 34557888877644332 1 12334454442 445778999999999999986554446666542 2344
Q ss_pred eeeEeeeee
Q 001085 132 VLHVSIQRV 140 (1160)
Q Consensus 132 VLHVtIQ~L 140 (1160)
.|||.++++
T Consensus 115 ~i~~~l~~~ 123 (124)
T cd04044 115 ELNYDLRFF 123 (124)
T ss_pred EEEEEEEeC
Confidence 569998874
No 217
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=69.98 E-value=16 Score=37.82 Aligned_cols=87 Identities=14% Similarity=0.167 Sum_probs=51.0
Q ss_pred eeeeeccccccc----cc-eEEEEeecCCCCccccccccccccCccccCccchhhhhccccCCccccccceeEEEEec--
Q 001085 21 QFHATQVAQLGE----NA-LMISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVST-- 93 (1160)
Q Consensus 21 qFhATQVPq~gw----Dk-LfVSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVSm-- 93 (1160)
..+|..+|...+ |. .-|++.|...|....||. ..-++- +|+|.-.-........++.+....|.|.-
T Consensus 33 Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~-vi~~t~-----nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d 106 (162)
T cd04020 33 VKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTP-VVKKSV-----NPVWNHTFVYDGVSPEDLSQACLELTVWDHD 106 (162)
T ss_pred EEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCC-ccCCCC-----CCCCCCEEEEecCCHHHhCCCEEEEEEEeCC
Confidence 467777776431 22 224466777777766653 222233 55554333222222334566777887752
Q ss_pred CCCcccccceeecchhhhhh
Q 001085 94 GLSKAGFVGEASIDFADYAE 113 (1160)
Q Consensus 94 GSSKSgiLGEasINlAdYae 113 (1160)
..++..+||++.|+++++..
T Consensus 107 ~~~~d~~lG~v~i~l~~~~~ 126 (162)
T cd04020 107 KLSSNDFLGGVRLGLGTGKS 126 (162)
T ss_pred CCCCCceEEEEEEeCCcccc
Confidence 34568999999999999764
No 218
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=69.84 E-value=1.1e+02 Score=35.72 Aligned_cols=77 Identities=29% Similarity=0.391 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhHHHH------HHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHh-------hhhh----hhHHHH----
Q 001085 856 TIALVKKEAESSVEEV------QRIQRIEDEKEAAVELLKSELELLKVQCHNLKQ-------ALVE----DESEKE---- 914 (1160)
Q Consensus 856 ~~~~~k~eae~~~~el------~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~-------~l~~----~e~eke---- 914 (1160)
..+++-.++-..+.=. -+|+.+-+|++.+ +.+|..|+.|..+.++ +... +...-|
T Consensus 197 ~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L----~~qv~klk~qLee~~~~~~~~~~~~~~~~l~~~~~~En~d~ 272 (302)
T PF09738_consen 197 KRALVSQEAAQLLESAGDGSLDVRLKKLADEKEEL----LEQVRKLKLQLEERQSEGRRQKSSSENGVLGDDEDLENTDL 272 (302)
T ss_pred cccccchhhhhhhcccCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhccccccccCCCcccccccccccccc
Confidence 4444545554444433 4788888999775 3445555555544322 2211 111112
Q ss_pred ---HH----HHHHHHhhhhhhhhHHHHHH
Q 001085 915 ---KL----RKQAFQLKGDLKKKEDALNS 936 (1160)
Q Consensus 915 ---~l----~kqv~~lk~~l~kke~~~~~ 936 (1160)
.+ -+||..+|=.|.|-|.++++
T Consensus 273 ~~~d~qrdanrqisd~KfKl~KaEQeit~ 301 (302)
T PF09738_consen 273 HFIDLQRDANRQISDYKFKLQKAEQEITT 301 (302)
T ss_pred cHHHhhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 13 48999999999888888764
No 219
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=69.39 E-value=11 Score=36.70 Aligned_cols=54 Identities=13% Similarity=0.202 Sum_probs=36.1
Q ss_pred ceeEEEEe-cCC-C-cccccceeecchhhhhhhcCcceeeccccCC-----CCCceeeEeeee
Q 001085 85 RIYNFIVS-TGL-S-KAGFVGEASIDFADYAEASKTSTVSLPLKYS-----RSKAVLHVSIQR 139 (1160)
Q Consensus 85 kiYKfVVS-mGS-S-KSgiLGEasINlAdYaea~kp~tVSLPLK~c-----nsGtVLHVtIQ~ 139 (1160)
....|.|- -+. + +..+||++.|.++++..-..+...-+||..= .+| -|||+|+.
T Consensus 64 ~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G-~l~l~~~~ 125 (127)
T cd04022 64 LVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRG-EIGLKVYI 125 (127)
T ss_pred CeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccE-EEEEEEEE
Confidence 34555554 333 3 7899999999999998434555667788752 245 77777764
No 220
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=69.08 E-value=89 Score=33.07 Aligned_cols=101 Identities=22% Similarity=0.235 Sum_probs=60.8
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhHHHHHHHhHHHHhHHHHHHHHHHhhhhhhhHHHHhccccccCCCchHHHHHHHHHhh
Q 001085 310 DLSELELQTLRKQIVKESKRAQDLSREVISLKEEKDLLKLDCEKLKTFQKRMDEAKVRNKLHFQGGDPWVLLEEIRQELS 389 (1160)
Q Consensus 310 d~s~lELQtLRKQi~kEsKrgqdLs~EVs~Lk~ERD~LK~E~EqLKs~~k~~~ea~~~~rl~~e~~D~~~~leELk~EL~ 389 (1160)
-....++..||.++.. --..+++.++.+...|+.|++.|+...+. +...+..++|-+++
T Consensus 54 ~~~~a~~~eLr~el~~------~~k~~~~~lr~~~e~L~~eie~l~~~L~~---------------ei~~l~a~~klD~n 112 (177)
T PF07798_consen 54 YLFKAAIAELRSELQN------SRKSEFAELRSENEKLQREIEKLRQELRE---------------EINKLRAEVKLDLN 112 (177)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHH
Confidence 3344455556666553 22346688899999999999999886552 11133446666677
Q ss_pred hhhhhhh-hHHHHHHHhhhhhHHHHHHhhhHHHHHHHHhhhhc
Q 001085 390 YEKDLNA-NLRLQLQKTQESNAELILAVQDLDEMLEQKNREIS 431 (1160)
Q Consensus 390 ~EKelNa-NL~LQLqKTQESN~ELvlaVqDLEEmLEQk~~EIs 431 (1160)
.+|.-+. ..+-+=.|+++=|..+---+.+|-..||.-+.++.
T Consensus 113 ~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~l 155 (177)
T PF07798_consen 113 LEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDTL 155 (177)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6663222 22233345666666666666677777776666554
No 221
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=68.98 E-value=40 Score=31.28 Aligned_cols=58 Identities=29% Similarity=0.421 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHhHHHHhHHHHHHHHHHh
Q 001085 292 DIEIEKLKSELVALARQADLSELELQTLRKQIVKESKRAQDLSREVISLKEEKDLLKLDCEKLKT 356 (1160)
Q Consensus 292 e~~iEkLKsE~~sL~Rqad~s~lELQtLRKQi~kEsKrgqdLs~EVs~Lk~ERD~LK~E~EqLKs 356 (1160)
+..+..|+.-+..+.|+..+...++-+|+++=.-= .+.+..++.|++.||.|++-|+.
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~-------~~~l~~a~~e~~~Lk~E~e~L~~ 61 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSA-------ERQLGDAYEENNKLKEENEALRK 61 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788899999999999999999999888864433 34455555555555555555544
No 222
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=68.37 E-value=12 Score=35.60 Aligned_cols=83 Identities=10% Similarity=0.218 Sum_probs=44.7
Q ss_pred eeeeecccccc-ccc-----eEEEEeecCCCCccccccccccccC--ccccCccchhhhhccccCCccccccceeEEEEe
Q 001085 21 QFHATQVAQLG-ENA-----LMISVVPLDVGKPTVRLEKAAIEDG--CCRWLNSVYETVKFVREPKSGKISERIYNFIVS 92 (1160)
Q Consensus 21 qFhATQVPq~g-wDk-----LfVSiVp~DtGKtTaKteKAaVrnG--~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVS 92 (1160)
-++|.++|... +.. .-|.++|...+....|| .|..+ +..|..++. | +..-..+..+..+|.|.
T Consensus 20 v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT---~v~~~t~~P~wne~f~----f--~i~~~~l~~~~l~i~v~ 90 (123)
T cd08521 20 IKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKT---SVKKNTTNPVFNETLK----Y--HISKSQLETRTLQLSVW 90 (123)
T ss_pred EEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeec---cccCCCCCCcccceEE----E--eCCHHHhCCCEEEEEEE
Confidence 46777777532 222 33445666543333333 23333 444554432 1 11112334566677665
Q ss_pred c--CCCcccccceeecchhhhh
Q 001085 93 T--GLSKAGFVGEASIDFADYA 112 (1160)
Q Consensus 93 m--GSSKSgiLGEasINlAdYa 112 (1160)
- +.++..++|++.|+|+++.
T Consensus 91 d~~~~~~~~~iG~~~i~l~~l~ 112 (123)
T cd08521 91 HHDRFGRNTFLGEVEIPLDSWD 112 (123)
T ss_pred eCCCCcCCceeeEEEEeccccc
Confidence 2 3467889999999999984
No 223
>PF14992 TMCO5: TMCO5 family
Probab=67.96 E-value=93 Score=35.93 Aligned_cols=112 Identities=21% Similarity=0.256 Sum_probs=71.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH------hHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHH-HHH
Q 001085 751 KLCQLSNQLNVKTDQIEQMLKEINNL------SNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAE-QKE 823 (1160)
Q Consensus 751 Ki~~L~~qL~~~~~~~e~m~~el~~~------s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e-~~e 823 (1160)
+-++|...++.+...|+.+..|+..- +++....-...+....++..+..+|+.+.+-+++-...|-.++. +.-
T Consensus 19 ~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~ 98 (280)
T PF14992_consen 19 ANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQET 98 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccC
Confidence 55666777777777777777776532 22222222223333355567777777777777666666655533 333
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001085 824 SLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKK 862 (1160)
Q Consensus 824 ~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~ 862 (1160)
+.+.+-.+++++..+++.-+|.....-..++.+++-+.+
T Consensus 99 ~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~ 137 (280)
T PF14992_consen 99 NVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVED 137 (280)
T ss_pred CCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888888888888888887777777776654
No 224
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=67.22 E-value=19 Score=35.27 Aligned_cols=80 Identities=19% Similarity=0.414 Sum_probs=44.8
Q ss_pred EEEEeecCCCCccccccccccccCccccCccchhhh-hccccCCccccccceeEEEEec--CCCcccccceeecchhhhh
Q 001085 36 MISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYETV-KFVREPKSGKISERIYNFIVST--GLSKAGFVGEASIDFADYA 112 (1160)
Q Consensus 36 fVSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyETv-kl~qD~kTkk~~EkiYKfVVSm--GSSKSgiLGEasINlAdYa 112 (1160)
-|.+.|........|| .|..++ .+|+|.-+ .| +....++..+...|-|.- ..++..+||++.|+|+++-
T Consensus 42 kv~l~p~~~~~~~~kT---~v~~~t---~nP~~nE~f~f--~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~ 113 (125)
T cd08393 42 KTYLLPDKSNRGKRKT---SVKKKT---LNPVFNETLRY--KVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWD 113 (125)
T ss_pred EEEEEcCCCccccccC---ccCcCC---CCCccCceEEE--ECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccc
Confidence 3455676543333333 344444 34555432 12 233345566677777763 3467889999999999985
Q ss_pred hhcCcceeeccc
Q 001085 113 EASKTSTVSLPL 124 (1160)
Q Consensus 113 ea~kp~tVSLPL 124 (1160)
-. .+.+.=.||
T Consensus 114 ~~-~~~~~W~~L 124 (125)
T cd08393 114 WS-NTQPTWYPL 124 (125)
T ss_pred cC-CCCcceEEC
Confidence 43 444444444
No 225
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=67.17 E-value=7 Score=38.25 Aligned_cols=83 Identities=16% Similarity=0.232 Sum_probs=45.9
Q ss_pred eeeeccccc--cccceE--EEEeecCCCCccccccccccccCccccCccchhh-hhccccCCccccccceeEEEEe---c
Q 001085 22 FHATQVAQL--GENALM--ISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYET-VKFVREPKSGKISERIYNFIVS---T 93 (1160)
Q Consensus 22 FhATQVPq~--gwDkLf--VSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyET-vkl~qD~kTkk~~EkiYKfVVS---m 93 (1160)
.+|..+|.. |...-| |.+.|...... .-|+.|..+++ +|+|.- ..| +.....+..+|- |.|. .
T Consensus 19 i~ar~L~~~~~g~~dpYVkv~l~p~~~~~~---~~kT~v~~~t~---~P~~nE~F~f--~v~~~~~~~~l~-v~V~~~~~ 89 (119)
T cd08685 19 LEAKGLRSTNSGTCNSYVKISLSPDKEVRF---RQKTSTVPDSA---NPLFHETFSF--DVNERDYQKRLL-VTVWNKLS 89 (119)
T ss_pred EEEECCCCCCCCCCCeeEEEEEEeCCCCcc---eEeCccccCCC---CCccccEEEE--EcChHHhCCEEE-EEEECCCC
Confidence 355555543 222223 34556443322 22455666665 666643 333 233344555554 6664 2
Q ss_pred CCCcccccceeecchhhhhh
Q 001085 94 GLSKAGFVGEASIDFADYAE 113 (1160)
Q Consensus 94 GSSKSgiLGEasINlAdYae 113 (1160)
++.+..+||++.|.+++++.
T Consensus 90 ~~~~~~~lG~~~i~l~~~~~ 109 (119)
T cd08685 90 KSRDSGLLGCMSFGVKSIVN 109 (119)
T ss_pred CcCCCEEEEEEEecHHHhcc
Confidence 44568999999999999973
No 226
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=66.96 E-value=7.2 Score=38.81 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=48.8
Q ss_pred EEEeecCCC-CccccccccccccCccccCccchhhhhccccCCccccccceeEEEEe--cCCCcccccceeecchhhhhh
Q 001085 37 ISVVPLDVG-KPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVS--TGLSKAGFVGEASIDFADYAE 113 (1160)
Q Consensus 37 VSiVp~DtG-KtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVS--mGSSKSgiLGEasINlAdYae 113 (1160)
|+++|.... +...| +.|..++ .||+|.=+ |.=+....++.++...|-|. .+.++..+||++.|.|+++-.
T Consensus 41 v~Llp~~~~~~~~~k---T~v~~~t---~nPvfnE~-F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~ 113 (124)
T cd08680 41 VALLPCSSSTSCLFR---TKALEDQ---DKPVFNEV-FRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFES 113 (124)
T ss_pred EEEccCCCCCCceEE---cCccCCC---CCCccccE-EEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccC
Confidence 556786643 23333 4466666 57888544 22257777888898888887 456788899999999999844
No 227
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=66.85 E-value=2.7e+02 Score=32.87 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhc
Q 001085 888 LKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEKKLKDS 944 (1160)
Q Consensus 888 l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~~~s 944 (1160)
++..+..|+.+...++..+. .-.....+...|++++.-.++-.+.+-.|+++.
T Consensus 316 ~~~~~~~l~~~l~~~~~~~~----~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~ 368 (444)
T TIGR03017 316 LKQREAELREALENQKAKVL----ELNRQRDEMSVLQRDVENAQRAYDAAMQRYTQT 368 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444332 222224456667777777777777777776554
No 228
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.69 E-value=2.5e+02 Score=32.44 Aligned_cols=56 Identities=25% Similarity=0.420 Sum_probs=42.0
Q ss_pred HHHHHHhhccC-hhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Q 001085 463 ALEELVKEHRD-VKETYLLEQKIMDLYSEIEIYRRDKDELETQMEQLALDYEILKQE 518 (1160)
Q Consensus 463 ~l~~l~ke~~d-~kE~~~L~~KI~eL~~ele~y~~~~~eLe~k~eqL~~dye~LkQE 518 (1160)
.+.++.+..-+ .++++.|-.+|.+++.+++.-+++++.+...|.+|..++..++.-
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~ 95 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKEN 95 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554444 358888888999888888888888888888888888777777543
No 229
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=66.34 E-value=3.3e+02 Score=33.77 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=55.7
Q ss_pred hhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001085 622 KGYSDSLATIKELEAYIKNLEEELEKQAQVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQ 701 (1160)
Q Consensus 622 ~e~S~~l~~i~~Le~qv~sl~eel~~Qaq~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~q 701 (1160)
..|.+....++.....+..+..+|......+.-|.+.+.. -+.|.. .+++..-++..+.+.+...+..+..+
T Consensus 266 ~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~e----le~RL~----~l~~LkrKyg~s~e~l~~~~~~l~~e 337 (563)
T TIGR00634 266 GSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNE----IEERLA----QIKRLKRKYGASVEEVLEYAEKIKEE 337 (563)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH----HHHHHH----HHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3445555566666667777777777777777666655543 233332 23333334445666555555555555
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 001085 702 MASSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRD 746 (1160)
Q Consensus 702 msSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~ 746 (1160)
+..--... .++..|..+...+++.+.++..+|...|.
T Consensus 338 L~~l~~~~--------~~le~L~~el~~l~~~l~~~a~~Ls~~R~ 374 (563)
T TIGR00634 338 LDQLDDSD--------ESLEALEEEVDKLEEELDKAAVALSLIRR 374 (563)
T ss_pred HHHHhCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 42211111 13444555555555555555444444444
No 230
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=66.34 E-value=1.1e+02 Score=37.38 Aligned_cols=46 Identities=20% Similarity=0.109 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhh
Q 001085 879 DEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLK 924 (1160)
Q Consensus 879 deke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk 924 (1160)
++...++.+++.=...|+.+-.-+|..+..-+..+..|+.||--|=
T Consensus 403 E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 403 EENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 4444556666665555555555555566666666777777765443
No 231
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=65.98 E-value=2.2e+02 Score=31.61 Aligned_cols=31 Identities=29% Similarity=0.362 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhHH
Q 001085 749 ETKLCQLSNQLNVKTDQIEQMLKEINNLSNQ 779 (1160)
Q Consensus 749 e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~q 779 (1160)
+.++..|..+|.-+++.++.|..=-++....
T Consensus 174 e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k 204 (207)
T PF05010_consen 174 EMKVQSLEESLEQKTKENEELTKICDELISK 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3488888888888888888877665555443
No 232
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=65.81 E-value=48 Score=41.66 Aligned_cols=14 Identities=36% Similarity=0.413 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 001085 883 AAVELLKSELELLK 896 (1160)
Q Consensus 883 ~~~~~l~se~~~l~ 896 (1160)
.++.-|.-.+..|+
T Consensus 495 ~~ve~L~~~l~~l~ 508 (652)
T COG2433 495 KRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 233
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=65.71 E-value=89 Score=34.58 Aligned_cols=89 Identities=18% Similarity=0.197 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHH
Q 001085 855 STIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDAL 934 (1160)
Q Consensus 855 ~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~ 934 (1160)
......-..+..+...++.+..-+.+-...++.|..|++.|+.+...+...+...+.+...|..|+.++.+-...-..-|
T Consensus 28 ~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m 107 (251)
T PF11932_consen 28 QVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLM 107 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455566666677767777777888899999999999999999999999999999999988887776666666
Q ss_pred HHHHHhhhh
Q 001085 935 NSLEKKLKD 943 (1160)
Q Consensus 935 ~~~ek~~~~ 943 (1160)
..+...|..
T Consensus 108 ~~m~~~L~~ 116 (251)
T PF11932_consen 108 EQMIDELEQ 116 (251)
T ss_pred HHHHHHHHH
Confidence 677777654
No 234
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=65.55 E-value=3.8e+02 Score=34.18 Aligned_cols=96 Identities=17% Similarity=0.194 Sum_probs=54.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 001085 677 LRKTRLKNANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLS 756 (1160)
Q Consensus 677 LrktR~~na~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~ 756 (1160)
|...+-.++-.+-.++..+..|-.++. .+-.+++...-.+....+.+...|+..+.....++..+.. .+..+..|.
T Consensus 307 l~~~y~~~hP~v~~l~~qi~~l~~~i~---~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~-~~~e~~~L~ 382 (754)
T TIGR01005 307 LSTTMLANHPRVVAAKSSLADLDAQIR---SELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGE-QQVDLDALQ 382 (754)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-hHHHHHHHH
Confidence 444556666666666666666555542 1222333333445555555566666666666666555443 344666666
Q ss_pred HHHhhhhHHHHHHHHHHHHH
Q 001085 757 NQLNVKTDQIEQMLKEINNL 776 (1160)
Q Consensus 757 ~qL~~~~~~~e~m~~el~~~ 776 (1160)
.+.+...+..+.++..++..
T Consensus 383 Re~~~~~~~Y~~ll~r~~e~ 402 (754)
T TIGR01005 383 RDAAAKRQLYESYLTNYRQA 402 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665555443
No 235
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=65.22 E-value=14 Score=36.16 Aligned_cols=102 Identities=13% Similarity=0.148 Sum_probs=58.6
Q ss_pred eeeeccccc----cccceEEEEeecCCCCc-cccccccccccCccccCccchhhhhccccCCccccccceeEEEEec--C
Q 001085 22 FHATQVAQL----GENALMISVVPLDVGKP-TVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVST--G 94 (1160)
Q Consensus 22 FhATQVPq~----gwDkLfVSiVp~DtGKt-TaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVSm--G 94 (1160)
|.|-.+|.. |.---||.| ..|+. ++|| .|..+++ +|+|.-.--+. ...+ .+..+|.|.- .
T Consensus 7 ~~a~~L~~~~~~~g~sDpYv~v---~l~~~~~~kT---~v~~kt~---~P~WnE~F~f~-v~~~---~~~l~~~v~d~~~ 73 (121)
T cd08401 7 GEAKNLPPRSGPNKMRDCYCTV---NLDQEEVFRT---KTVEKSL---CPFFGEDFYFE-IPRT---FRHLSFYIYDRDV 73 (121)
T ss_pred EEccCCCCCCCCCCCcCcEEEE---EECCccEEEe---eEEECCC---CCccCCeEEEE-cCCC---CCEEEEEEEECCC
Confidence 566666653 222224444 33433 3333 3444443 67765543222 1111 3577888764 3
Q ss_pred CCcccccceeecchhhhhhhcCcceeeccccCC-----CCCceeeEeee
Q 001085 95 LSKAGFVGEASIDFADYAEASKTSTVSLPLKYS-----RSKAVLHVSIQ 138 (1160)
Q Consensus 95 SSKSgiLGEasINlAdYaea~kp~tVSLPLK~c-----nsGtVLHVtIQ 138 (1160)
.++..++|.+.|+++++.. ..+...-+||+.- .+|.| |+.+.
T Consensus 74 ~~~~~~iG~~~i~l~~l~~-~~~~~~w~~L~~~~~~~~~~G~i-~l~~~ 120 (121)
T cd08401 74 LRRDSVIGKVAIKKEDLHK-YYGKDTWFPLQPVDADSEVQGKV-HLELR 120 (121)
T ss_pred CCCCceEEEEEEEHHHccC-CCCcEeeEEEEccCCCCcccEEE-EEEEE
Confidence 4566899999999999875 3456678888752 15666 87654
No 236
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=64.95 E-value=19 Score=34.48 Aligned_cols=98 Identities=13% Similarity=0.143 Sum_probs=52.6
Q ss_pred eeeeeccccccc--cceEEEEeecCCCCccccccccccccCccccCccchhhhhccccCCccccccceeEEEEec--CCC
Q 001085 21 QFHATQVAQLGE--NALMISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVST--GLS 96 (1160)
Q Consensus 21 qFhATQVPq~gw--DkLfVSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVSm--GSS 96 (1160)
-+.|..+|...+ ....=-+|-+..|....||.- .-++-+..|...+.=.+ .+ .......|.|-- ..+
T Consensus 7 v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~-~~~t~~P~Wne~f~~~~---~~-----~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 7 VVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQT-IPNTLNPKWNYWCEFPI---FS-----AQNQLLKLILWDKDRFA 77 (128)
T ss_pred EEEeeCCCcccCCCCCCcCCeEEEEECCEEEecce-ecCCcCCccCCcEEEEe---cC-----CCCCEEEEEEEECCCCC
Confidence 466777776444 222211222334666665542 12233444554332111 11 224566777652 334
Q ss_pred cccccceeecchhhhhh--hcCcceeeccccCC
Q 001085 97 KAGFVGEASIDFADYAE--ASKTSTVSLPLKYS 127 (1160)
Q Consensus 97 KSgiLGEasINlAdYae--a~kp~tVSLPLK~c 127 (1160)
+..+||.+.|.|++... ......--+||..+
T Consensus 78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~ 110 (128)
T cd04024 78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKST 110 (128)
T ss_pred CCCcceEEEEEHHHhhcccccCccceeEEccCc
Confidence 77899999999999874 22334556788776
No 237
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=64.68 E-value=5.4e+02 Score=35.65 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=17.7
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHH
Q 001085 564 KSKDLSDSLAIINELETHIEGLASEL 589 (1160)
Q Consensus 564 ~~~e~sdSl~~I~~Le~qi~~LE~El 589 (1160)
++.++++++..+..++.++++++..+
T Consensus 221 ~i~~l~e~~~~~~~~~~~le~l~~~~ 246 (1353)
T TIGR02680 221 ELTDVADALEQLDEYRDELERLEALE 246 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777433
No 238
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=63.82 E-value=20 Score=34.51 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=22.0
Q ss_pred ccceeEEEEe-cCCCcccccceeecchhhhhhh
Q 001085 83 SERIYNFIVS-TGLSKAGFVGEASIDFADYAEA 114 (1160)
Q Consensus 83 ~EkiYKfVVS-mGSSKSgiLGEasINlAdYaea 114 (1160)
.....+|-|. .+..+..++|++.|.+++....
T Consensus 82 ~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 82 QRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPN 114 (123)
T ss_pred CCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCC
Confidence 3345565554 4444788999999999987653
No 239
>PLN02939 transferase, transferring glycosyl groups
Probab=63.64 E-value=5e+02 Score=34.95 Aligned_cols=142 Identities=22% Similarity=0.250 Sum_probs=93.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh---hhhh-hHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHH
Q 001085 706 FDANEKVAMKALAEASELRMQKRHLEEMINKASEEALS---LRDD-YETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLE 781 (1160)
Q Consensus 706 ~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~---~~~~-~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~ 781 (1160)
+-+.+.-...-..|-+-|.+-.+.||..+-.++++.-. ++.+ .=.|+.-|..-|+..+++.++-..-|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 324 (977)
T PLN02939 252 VAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLD------- 324 (977)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 33444445556677778888888899998888877654 2221 223888888888888888887655433
Q ss_pred HhhhhhhHhhhHHHHHHHHHH-----HhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHH
Q 001085 782 EQKKHDEEDSGALSLEIQQLK-----ADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELEST 856 (1160)
Q Consensus 782 ~~~~~~~~~~~~~~~eiq~l~-----~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~ 856 (1160)
...+|...++.|+ |.+.+++.++-.|++| |-. ..-+.+..+..|..+.++--..+..++..+
T Consensus 325 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (977)
T PLN02939 325 --------QNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQ---KLK--LLEERLQASDHEIHSYIQLYQESIKEFQDT 391 (977)
T ss_pred --------cchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHH---HHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1233444444444 4455566665555532 222 222345667788888888888889999999
Q ss_pred HHHHHHHHHhh
Q 001085 857 IALVKKEAESS 867 (1160)
Q Consensus 857 ~~~~k~eae~~ 867 (1160)
+..++.|.++.
T Consensus 392 ~~~~~~~~~~~ 402 (977)
T PLN02939 392 LSKLKEESKKR 402 (977)
T ss_pred HHHHHhhhhcc
Confidence 99999888875
No 240
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=63.18 E-value=1.2e+02 Score=37.58 Aligned_cols=59 Identities=22% Similarity=0.391 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhh
Q 001085 726 QKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQK 784 (1160)
Q Consensus 726 ~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~ 784 (1160)
.+..+++.|..+++.+..|+++-.+--..-..||+.+++++-.|...|....++++.+|
T Consensus 456 ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 456 EKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567888888999999999988888888889999999999999888887777776665
No 241
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=63.07 E-value=2.3e+02 Score=30.91 Aligned_cols=145 Identities=21% Similarity=0.295 Sum_probs=81.8
Q ss_pred HHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhh
Q 001085 769 MLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANR 848 (1160)
Q Consensus 769 m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~ 848 (1160)
+...|.....++.....+.+....+++.++..|..-+.++..+...|..++.+-+.-+..|..+|..+...+.-+.....
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~ 107 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKW 107 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445556666888899999999999998888888888877777666666666555544444444444
Q ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhh
Q 001085 849 ERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLK 928 (1160)
Q Consensus 849 e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~ 928 (1160)
+-.-|...|.-+. .|++..-.....=|..+ .|-..+|+.| |.+.+..|...|+
T Consensus 108 e~evL~qr~~kle-----------------~ErdeL~~kf~~~i~ev-qQk~~~kn~l---------LEkKl~~l~~~lE 160 (201)
T PF13851_consen 108 EHEVLEQRFEKLE-----------------QERDELYRKFESAIQEV-QQKTGLKNLL---------LEKKLQALSEQLE 160 (201)
T ss_pred HHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHH-HHHHHHHHHH---------HHHHHHHHHHHHH
Confidence 4443333333322 22222222222222221 1333444443 4556666777777
Q ss_pred hhHHHHHHHHHh
Q 001085 929 KKEDALNSLEKK 940 (1160)
Q Consensus 929 kke~~~~~~ek~ 940 (1160)
+|+..+..+-..
T Consensus 161 ~keaqL~evl~~ 172 (201)
T PF13851_consen 161 KKEAQLNEVLAA 172 (201)
T ss_pred HHHHHHHHHHHH
Confidence 777776666443
No 242
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=61.55 E-value=16 Score=34.51 Aligned_cols=43 Identities=26% Similarity=0.367 Sum_probs=32.0
Q ss_pred ceeEEEEec--CCCcccccceeecchhhhhhhcCcceeeccccCCC
Q 001085 85 RIYNFIVST--GLSKAGFVGEASIDFADYAEASKTSTVSLPLKYSR 128 (1160)
Q Consensus 85 kiYKfVVSm--GSSKSgiLGEasINlAdYaea~kp~tVSLPLK~cn 128 (1160)
....|-|-. ..++..++|++.|++++... ..+...++||..+.
T Consensus 61 ~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~-~~~~~~~~~L~~~g 105 (115)
T cd04040 61 AVLKVEVYDWDRGGKDDLLGSAYIDLSDLEP-EETTELTLPLDGQG 105 (115)
T ss_pred CEEEEEEEeCCCCCCCCceEEEEEEHHHcCC-CCcEEEEEECcCCC
Confidence 344454442 34577899999999999765 57789999998764
No 243
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=61.50 E-value=16 Score=35.17 Aligned_cols=73 Identities=12% Similarity=0.149 Sum_probs=43.8
Q ss_pred cCccccCccchhhhhccccCCccccccceeEEEEe-cCC-CcccccceeecchhhhhhhcCc----ceeeccccCCC--C
Q 001085 58 DGCCRWLNSVYETVKFVREPKSGKISERIYNFIVS-TGL-SKAGFVGEASIDFADYAEASKT----STVSLPLKYSR--S 129 (1160)
Q Consensus 58 nG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVS-mGS-SKSgiLGEasINlAdYaea~kp----~tVSLPLK~cn--s 129 (1160)
+.+..|...++=.+.- +.-+. .....+|.|- -+. .+..+||++.|.++++...... ...+.||..-+ .
T Consensus 44 ~~~P~Wne~f~f~v~~---~~~~~-~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~ 119 (125)
T cd04051 44 GTNPTWNETLRFPLDE---RLLQQ-GRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKP 119 (125)
T ss_pred CCCCCCCCEEEEEcCh---Hhccc-CccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCc
Confidence 3477888766544321 11011 1334455453 454 5778999999999999986643 36778887532 3
Q ss_pred Cceee
Q 001085 130 KAVLH 134 (1160)
Q Consensus 130 GtVLH 134 (1160)
+.+||
T Consensus 120 ~G~~~ 124 (125)
T cd04051 120 QGVLN 124 (125)
T ss_pred CeEEe
Confidence 44554
No 244
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.50 E-value=4.2e+02 Score=33.30 Aligned_cols=171 Identities=19% Similarity=0.236 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001085 576 NELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQAQVYEAD 655 (1160)
Q Consensus 576 ~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~~Qaq~f~~d 655 (1160)
.-++++++.|--|++ .+++..--++.+++...+++.+...-..+.|+++.. ....+| ..+.+. | -
T Consensus 168 ~~~~~~~~kl~ie~e-------~~~h~~qq~e~~l~t~~a~~e~~nrh~~erlk~~~~--s~~e~l-~kl~~E-q----Q 232 (613)
T KOG0992|consen 168 RPIESVAEKLRIELE-------QLRHSTQQEENLLTTTLAAVEEENRHLKERLKIVEE--SRLESL-GKLNSE-Q----Q 232 (613)
T ss_pred hhHHHHHHHHHHHHH-------HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH--HHHHHH-HhhhHH-H----H
Confidence 344555555554433 456666677777888888887776644455554431 111122 233333 2 1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001085 656 LEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLEEMIN 735 (1160)
Q Consensus 656 l~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~ 735 (1160)
+.+++..+.--++-..|++.-+.-+.--.+-.-..+..+..+|+.+++ .|+-+-|.+..+++...+
T Consensus 233 lq~~~~ehkllee~~~rl~~~~s~VegS~S~~~l~~ek~r~~lee~~~--------------~e~~e~rk~v~k~~~l~q 298 (613)
T KOG0992|consen 233 LQALIREHKLLEEHLERLHLQLSDVEGSWSGQNLALEKQRSRLEEQVA--------------EETTEKRKAVKKRDDLIQ 298 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 788888898889988888877765554444444566667777776662 277777877777776655
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHH
Q 001085 736 KASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQL 780 (1160)
Q Consensus 736 ~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql 780 (1160)
.-.+. ..+.+ |.+++..+=+.+.+-|+++..+|--+.+.-
T Consensus 299 ~~~~~----~~eL~-K~kde~~~n~~~~~lie~lq~el~~al~~c 338 (613)
T KOG0992|consen 299 SRKQV----SFELE-KAKDEIKQNDDKVKLIEELQDELSVALKEC 338 (613)
T ss_pred HHHHH----HHHHH-HHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 43222 23334 666777777778888888877776555443
No 245
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=61.02 E-value=3.2e+02 Score=31.87 Aligned_cols=105 Identities=25% Similarity=0.360 Sum_probs=67.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 001085 678 RKTRLKNANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSN 757 (1160)
Q Consensus 678 rktR~~na~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~ 757 (1160)
|+-|-+.--+-|-|+.-..-|.+-+-+|.++.|-++|. ++.|+-|..-|++
T Consensus 152 rrdeanfic~~EgLkak~a~LafDLkamideKEELimE-----------------------------RDa~kcKa~RLnh 202 (389)
T KOG4687|consen 152 RRDEANFICAHEGLKAKCAGLAFDLKAMIDEKEELIME-----------------------------RDAMKCKAARLNH 202 (389)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHHHhchHHHHHHH-----------------------------HHHHHHHHHHhhh
Confidence 33444444555677777777777777777776666542 6777778888888
Q ss_pred HHhhhhHHHHHHHHHHHHHhHHHHHhhhh-hhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhh
Q 001085 758 QLNVKTDQIEQMLKEINNLSNQLEEQKKH-DEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTV 836 (1160)
Q Consensus 758 qL~~~~~~~e~m~~el~~~s~ql~~~~~~-~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~ 836 (1160)
.|-.- |..-++| ..+.+..+-.|+.-|.+.+. ..-.+++.+|.|+
T Consensus 203 ELfva-----------------Lnadkrhpr~~DiDgll~ENkfLhaklk-----------------iadeElEliK~si 248 (389)
T KOG4687|consen 203 ELFVA-----------------LNADKRHPRAEDIDGLLAENKFLHAKLK-----------------IADEELELIKMSI 248 (389)
T ss_pred HHHHH-----------------HcCCCCCchhhhhHHHHHhhHHHHHHhc-----------------ccHHHHHHHHHHH
Confidence 77331 2233456 66777777778877777663 1223788888888
Q ss_pred HHHHHHHHH
Q 001085 837 KEYELLIQR 845 (1160)
Q Consensus 837 ~~~~~~~~~ 845 (1160)
-.|...+.-
T Consensus 249 aKYKqM~dA 257 (389)
T KOG4687|consen 249 AKYKQMADA 257 (389)
T ss_pred HHHHHHHHH
Confidence 777665543
No 246
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=60.92 E-value=3.6e+02 Score=32.40 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhh---HHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001085 834 TTVKEYELLIQRANRERDELESTIALVKKEAESS---VEEVQRIQRIEDEKEAAVELLKSELE 893 (1160)
Q Consensus 834 ~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~---~~el~~~~~~kdeke~~~~~l~se~~ 893 (1160)
....+.++-+.....+.+.|...++.++.+.... ..++..|.+--+-.+.....|..-++
T Consensus 317 ~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~e 379 (498)
T TIGR03007 317 IELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRE 379 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555566666666666666665543 33444554444444444444444333
No 247
>PRK10884 SH3 domain-containing protein; Provisional
Probab=60.81 E-value=86 Score=34.50 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=13.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhhh
Q 001085 723 LRMQKRHLEEMINKASEEALSLRDD 747 (1160)
Q Consensus 723 Lr~~~~~LEe~L~~a~~el~~~~~~ 747 (1160)
+|.+...|+..|.++..+|..++.+
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4445555565555555555554443
No 248
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=60.61 E-value=3.4e+02 Score=31.95 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 001085 716 ALAEASELRMQKRHLEEMINKASEEALSLRD 746 (1160)
Q Consensus 716 A~~E~seLr~~~~~LEe~L~~a~~el~~~~~ 746 (1160)
|+.+...-..-++-||=.++.+..+--++++
T Consensus 103 Ai~d~dqsq~skrdlelafqr~rdEw~~lqd 133 (305)
T PF14915_consen 103 AIQDHDQSQTSKRDLELAFQRARDEWVRLQD 133 (305)
T ss_pred HHhhHHHHHhhHHHHHHHHHHHhhHHHHHHH
Confidence 3344444444445666666666666555555
No 249
>PRK11281 hypothetical protein; Provisional
Probab=60.40 E-value=6e+02 Score=34.75 Aligned_cols=58 Identities=16% Similarity=0.286 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHH
Q 001085 576 NELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKN 640 (1160)
Q Consensus 576 ~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~s 640 (1160)
..||+.+..++.++.. .|.++..++..+..++....+....-+++..+++++..++.+
T Consensus 124 ~qLEq~L~q~~~~Lq~-------~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 124 RQLESRLAQTLDQLQN-------AQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5577777766654444 467777777777777777777777777777777777776655
No 250
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=60.33 E-value=2.8e+02 Score=30.90 Aligned_cols=9 Identities=33% Similarity=0.667 Sum_probs=4.7
Q ss_pred hhHHHHHHH
Q 001085 878 EDEKEAAVE 886 (1160)
Q Consensus 878 kdeke~~~~ 886 (1160)
.+|||.+|+
T Consensus 169 ~eEKekVi~ 177 (202)
T PF06818_consen 169 QEEKEKVIR 177 (202)
T ss_pred HHHHHHHHH
Confidence 455555554
No 251
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=59.81 E-value=24 Score=31.29 Aligned_cols=40 Identities=35% Similarity=0.530 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhc
Q 001085 481 EQKIMDLYSEIEIYRRDKDELETQMEQLALDYEILKQENH 520 (1160)
Q Consensus 481 ~~KI~eL~~ele~y~~~~~eLe~k~eqL~~dye~LkQEN~ 520 (1160)
++.|.+|...+..+..+++.|...+..|...|..|+.+||
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4456666666666666777777777777777777777775
No 252
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=59.78 E-value=1.5e+02 Score=35.23 Aligned_cols=90 Identities=18% Similarity=0.304 Sum_probs=48.4
Q ss_pred HHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhccccCccCcCccccccCCCCCCCCCCh
Q 001085 891 ELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEKKLKDSNRRASVSDGTRTTLRNNKSAPVSQGS 970 (1160)
Q Consensus 891 e~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~~~s~~~~~~~~~t~~~~~n~~~~~~~~~s 970 (1160)
.++.+..+|...+..|++-...-..+..-|..+-.+|..--+.+..+-.. .+..|. ..|||+ |+-..-
T Consensus 267 qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~e-meerg~-~mtD~s----------Plv~IK 334 (359)
T PF10498_consen 267 QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQE-MEERGS-SMTDGS----------PLVKIK 334 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHhcC-CCCCCC----------HHHHHH
Confidence 55555555666666565555555555555555555555555554444333 223333 345543 333444
Q ss_pred hHHHhHHHHHHHhhhhhhhHHH
Q 001085 971 KEIANLRERIKLLEGQIKSKEI 992 (1160)
Q Consensus 971 ~~~a~l~~~ik~~e~~ik~~~~ 992 (1160)
+-+..||.-|+.|+-+|--.+.
T Consensus 335 qAl~kLk~EI~qMdvrIGVleh 356 (359)
T PF10498_consen 335 QALTKLKQEIKQMDVRIGVLEH 356 (359)
T ss_pred HHHHHHHHHHHHhhhhhheehh
Confidence 5567777777777766654433
No 253
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=59.36 E-value=4.4e+02 Score=32.83 Aligned_cols=97 Identities=23% Similarity=0.245 Sum_probs=69.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHH
Q 001085 719 EASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEI 798 (1160)
Q Consensus 719 E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~ei 798 (1160)
...+-|..|..|.-.|.+..+.-.+|++.|-+-|++-...+. +-=.|-.-|-.|-.+++.++.++++.-.|...-.
T Consensus 405 ~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvs----qclEmdk~LskKeeeverLQ~lkgelEkat~SAL 480 (527)
T PF15066_consen 405 HLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVS----QCLEMDKTLSKKEEEVERLQQLKGELEKATTSAL 480 (527)
T ss_pred HHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHH----HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888999999999999999999999888776544332 2223555566677778888888877777877778
Q ss_pred HHHHHhhhhhhhhhhhhhHHH
Q 001085 799 QQLKADTEKLMMDNKSLSEEA 819 (1160)
Q Consensus 799 q~l~~~~~~l~~e~~~l~e~~ 819 (1160)
+.|+.+-+..-.+--.|.+..
T Consensus 481 dlLkrEKe~~EqefLslqeEf 501 (527)
T PF15066_consen 481 DLLKREKETREQEFLSLQEEF 501 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888887776555555554443
No 254
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=58.82 E-value=2.6e+02 Score=30.41 Aligned_cols=30 Identities=27% Similarity=0.273 Sum_probs=21.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 001085 875 QRIEDEKEAAVELLKSELELLKVQCHNLKQA 905 (1160)
Q Consensus 875 ~~~kdeke~~~~~l~se~~~l~~q~~~lk~~ 905 (1160)
..+..|- ..+-.|=.++-.||.|+.+||..
T Consensus 134 ~y~~~eh-~rll~LWr~v~~lRr~f~elr~~ 163 (182)
T PF15035_consen 134 QYLSSEH-SRLLSLWREVVALRRQFAELRTA 163 (182)
T ss_pred hhhcccc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 33556778999999999999864
No 255
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=57.65 E-value=66 Score=30.15 Aligned_cols=48 Identities=27% Similarity=0.367 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcchh
Q 001085 476 ETYLLEQKIMDLYSEIEIYRRDKDELETQMEQLALDYEILKQENHDIS 523 (1160)
Q Consensus 476 E~~~L~~KI~eL~~ele~y~~~~~eLe~k~eqL~~dye~LkQEN~dis 523 (1160)
..+.|+.||..+-.-|.-.+.++++|+.+..+|....+.|.+||..+.
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 356788999999888888888889999888888888888888877664
No 256
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=57.63 E-value=25 Score=33.60 Aligned_cols=29 Identities=34% Similarity=0.500 Sum_probs=21.4
Q ss_pred cccceeEEEEe--cCCCcccccceeecchhh
Q 001085 82 ISERIYNFIVS--TGLSKAGFVGEASIDFAD 110 (1160)
Q Consensus 82 ~~EkiYKfVVS--mGSSKSgiLGEasINlAd 110 (1160)
+.+....|-|- -+.++..+||++.|.+++
T Consensus 82 l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~ 112 (125)
T cd04031 82 LKERTLEVTVWDYDRDGENDFLGEVVIDLAD 112 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeeEEEEeccc
Confidence 44556666665 244678899999999998
No 257
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=57.49 E-value=31 Score=33.08 Aligned_cols=50 Identities=14% Similarity=0.217 Sum_probs=36.3
Q ss_pred eeEEEEe-cCCCcccccceeecchhhhhhhcCcceeeccccCCCCCceeeEee
Q 001085 86 IYNFIVS-TGLSKAGFVGEASIDFADYAEASKTSTVSLPLKYSRSKAVLHVSI 137 (1160)
Q Consensus 86 iYKfVVS-mGSSKSgiLGEasINlAdYaea~kp~tVSLPLK~cnsGtVLHVtI 137 (1160)
..+|-|- -+..+..++|++.|++++... -.+....+||..-..| -|||.|
T Consensus 65 ~l~v~v~d~d~~~~~~iG~~~~~l~~l~~-g~~~~~~~~L~~~~~g-~l~~~~ 115 (119)
T cd04036 65 VLELTVMDEDYVMDDHLGTVLFDVSKLKL-GEKVRVTFSLNPQGKE-ELEVEF 115 (119)
T ss_pred EEEEEEEECCCCCCcccEEEEEEHHHCCC-CCcEEEEEECCCCCCc-eEEEEE
Confidence 4566554 333378899999999998875 4688999999887656 345544
No 258
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=57.45 E-value=15 Score=36.23 Aligned_cols=93 Identities=14% Similarity=0.214 Sum_probs=52.0
Q ss_pred eeeeccccc----c-ccc-eEEEEeecCCCCccccccccccccC--ccccCccchhhhhccccCCccccccceeEEEEec
Q 001085 22 FHATQVAQL----G-ENA-LMISVVPLDVGKPTVRLEKAAIEDG--CCRWLNSVYETVKFVREPKSGKISERIYNFIVST 93 (1160)
Q Consensus 22 FhATQVPq~----g-wDk-LfVSiVp~DtGKtTaKteKAaVrnG--~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVSm 93 (1160)
.+|-.+|.. | +|- .-|+++|.+......|| .|..+ +..|...+.=.| ...++.+....|-|.-
T Consensus 22 i~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT---~v~~~t~nP~wnE~f~f~i------~~~~l~~~~L~~~V~d 92 (125)
T cd04029 22 KECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKT---SIKRNTTNPVYNETLKYSI------SHSQLETRTLQLSVWH 92 (125)
T ss_pred EEecCCCccCCCCCCCCcEEEEEEEcCCccccceEe---eeeeCCCCCcccceEEEEC------CHHHhCCCEEEEEEEE
Confidence 456666532 1 333 22466777653333344 24444 444665431112 2234556666777762
Q ss_pred --CCCcccccceeecchhhhhhhcCcceeeccc
Q 001085 94 --GLSKAGFVGEASIDFADYAEASKTSTVSLPL 124 (1160)
Q Consensus 94 --GSSKSgiLGEasINlAdYaea~kp~tVSLPL 124 (1160)
+.++..+||++.|.+++|.-. .....-+||
T Consensus 93 ~~~~~~~~~lG~~~i~l~~~~~~-~~~~~w~~l 124 (125)
T cd04029 93 YDRFGRNTFLGEVEIPLDSWNFD-SQHEECLPL 124 (125)
T ss_pred CCCCCCCcEEEEEEEeCCccccc-CCcccEEEC
Confidence 346788999999999998653 445555665
No 259
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=57.12 E-value=3.7e+02 Score=31.30 Aligned_cols=156 Identities=22% Similarity=0.276 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHH-------HHHHhhhhhHHH
Q 001085 767 EQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRV-------ELAQMKTTVKEY 839 (1160)
Q Consensus 767 e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~-------~~~~~k~~~~~~ 839 (1160)
..|...|....+|.+--..|=+.......+|+|.+.|.++........-.++ ...+.. ....+...-.+.
T Consensus 138 ~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k---~~~~~~~~l~~~~~~~~~~~~E~~L 214 (309)
T PF09728_consen 138 EELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEK---AKQEKEILLEEAAQVQTLKETEKEL 214 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555554445555556777788888888887555433222221 111111 111222222222
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHH
Q 001085 840 ELLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQ 919 (1160)
Q Consensus 840 ~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kq 919 (1160)
...|.-....-.++.++++---..-.+.-.|+..|. ..+..|-.|-..++..|..--..|..=-.|+..+.++
T Consensus 215 r~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~-------Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~ 287 (309)
T PF09728_consen 215 REQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMS-------KKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKE 287 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 233333333333333333333333333334444443 3466677888899999999988998888888888888
Q ss_pred HHHhhhhhhhhHH
Q 001085 920 AFQLKGDLKKKED 932 (1160)
Q Consensus 920 v~~lk~~l~kke~ 932 (1160)
+..++..+.+-+.
T Consensus 288 ~~~~~~k~~kLe~ 300 (309)
T PF09728_consen 288 LEKLKKKIEKLEK 300 (309)
T ss_pred HHHHHHHHHHHHH
Confidence 8887776665444
No 260
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=56.78 E-value=31 Score=34.69 Aligned_cols=107 Identities=15% Similarity=0.161 Sum_probs=63.2
Q ss_pred eeeeeccccccccceEEEEeecCCCCccccccccccccCccccCccchhhhhccccCCccccccceeEEEEe--cCCCcc
Q 001085 21 QFHATQVAQLGENALMISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVS--TGLSKA 98 (1160)
Q Consensus 21 qFhATQVPq~gwDkLfVSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVS--mGSSKS 98 (1160)
...|.++|...+....=.+|-+-.|..+.||. ..-.+-+..|...++=. +.++. .....|-|- -..++.
T Consensus 21 Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~-vi~~t~nP~Wne~f~f~---v~~~~-----~~~l~i~V~D~d~~~~d 91 (136)
T cd08375 21 IVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTK-VVSDTLNPKWNSSMQFF---VKDLE-----QDVLCITVFDRDFFSPD 91 (136)
T ss_pred EEEeeCCCCCCCCCCcCcEEEEEECCEeeecc-ccCCCCCCccCceEEEE---ecCcc-----CCEEEEEEEECCCCCCC
Confidence 56688888754444333344444566655543 22234556676544322 22322 234556554 223466
Q ss_pred cccceeecchhhhhh----hcCcceeeccccCCCCCceeeEee
Q 001085 99 GFVGEASIDFADYAE----ASKTSTVSLPLKYSRSKAVLHVSI 137 (1160)
Q Consensus 99 giLGEasINlAdYae----a~kp~tVSLPLK~cnsGtVLHVtI 137 (1160)
.+||.+.|++.++.. .-.|.+--+||++-+.| -+||+|
T Consensus 92 ~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g-~i~l~~ 133 (136)
T cd08375 92 DFLGRTEIRVADILKETKESKGPITKRLLLHEVPTG-EVVVKL 133 (136)
T ss_pred CeeEEEEEEHHHhccccccCCCcEEEEeccccccce-eEEEEE
Confidence 899999999999986 23455567889888888 456655
No 261
>PRK12704 phosphodiesterase; Provisional
Probab=56.67 E-value=4.8e+02 Score=32.51 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=10.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHhHHHHHh
Q 001085 757 NQLNVKTDQIEQMLKEINNLSNQLEEQ 783 (1160)
Q Consensus 757 ~qL~~~~~~~e~m~~el~~~s~ql~~~ 783 (1160)
.+|+.+...++.-..+|+.+.+.|...
T Consensus 96 e~Le~r~e~Lekke~eL~~re~~Le~r 122 (520)
T PRK12704 96 ENLDRKLELLEKREEELEKKEKELEQK 122 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444334444444433333
No 262
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=56.59 E-value=23 Score=33.63 Aligned_cols=103 Identities=10% Similarity=0.121 Sum_probs=55.3
Q ss_pred eeeeccccccccc---eEEEEeecCCCCcccccccccccc-CccccCccchhhhhccccCCccccccceeEEEEe-cCCC
Q 001085 22 FHATQVAQLGENA---LMISVVPLDVGKPTVRLEKAAIED-GCCRWLNSVYETVKFVREPKSGKISERIYNFIVS-TGLS 96 (1160)
Q Consensus 22 FhATQVPq~gwDk---LfVSiVp~DtGKtTaKteKAaVrn-G~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVS-mGSS 96 (1160)
+.|..+|...+-. -||.| ..|....||. ...++ -+..|...+.=.+.. + ......|-|- -...
T Consensus 8 ~~A~~L~~~~~~~~~dpyv~v---~~~~~~~kT~-~~~~~~~nP~Wne~f~f~v~~---~-----~~~~l~i~v~d~~~~ 75 (118)
T cd08681 8 LKARNLPNKRKLDKQDPYCVL---RIGGVTKKTK-TDFRGGQHPEWDEELRFEITE---D-----KKPILKVAVFDDDKR 75 (118)
T ss_pred EEccCCCCCCcCCCCCceEEE---EECCCccccc-cccCCCCCCccCceEEEEecC---C-----CCCEEEEEEEeCCCC
Confidence 4566666543221 22322 2344444433 22233 367787765433332 1 2345555554 3333
Q ss_pred cccccceeecchhhhhhhcCcceeeccccCC--CCCceeeEeee
Q 001085 97 KAGFVGEASIDFADYAEASKTSTVSLPLKYS--RSKAVLHVSIQ 138 (1160)
Q Consensus 97 KSgiLGEasINlAdYaea~kp~tVSLPLK~c--nsGtVLHVtIQ 138 (1160)
...+||++.|+++++... .....-+||... ++| -|||.++
T Consensus 76 ~~~~iG~~~~~l~~~~~~-~~~~~w~~L~~~~~~~G-~i~l~l~ 117 (118)
T cd08681 76 KPDLIGDTEVDLSPALKE-GEFDDWYELTLKGRYAG-EVYLELT 117 (118)
T ss_pred CCcceEEEEEecHHHhhc-CCCCCcEEeccCCcEee-EEEEEEE
Confidence 378999999999998763 345677787653 234 4566554
No 263
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=56.41 E-value=21 Score=34.74 Aligned_cols=105 Identities=12% Similarity=0.151 Sum_probs=59.6
Q ss_pred eeeeeccccccccce---E--EEEeecCCCCccccccccccccCccccCccchhhhhccccCCccccccceeEEEEec--
Q 001085 21 QFHATQVAQLGENAL---M--ISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVST-- 93 (1160)
Q Consensus 21 qFhATQVPq~gwDkL---f--VSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVSm-- 93 (1160)
-+.|-++|..++... | |.+-|....+...||. ..-.+-++.|...++=.+. .+. .+....|.|..
T Consensus 19 i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~-v~~~~~~P~wne~f~~~~~------~~~-~~~~l~v~v~d~~ 90 (131)
T cd04026 19 VREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTK-TIKKTLNPVWNETFTFDLK------PAD-KDRRLSIEVWDWD 90 (131)
T ss_pred EEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecce-eecCCCCCCccceEEEeCC------chh-cCCEEEEEEEECC
Confidence 566778886543332 2 2232222223444433 3223445566554443322 122 23456666652
Q ss_pred CCCcccccceeecchhhhhhhcCcceeeccccCCCCCceeeE
Q 001085 94 GLSKAGFVGEASIDFADYAEASKTSTVSLPLKYSRSKAVLHV 135 (1160)
Q Consensus 94 GSSKSgiLGEasINlAdYaea~kp~tVSLPLK~cnsGtVLHV 135 (1160)
...+..+||.+.|++++.... +..--.||..-.+|.+-.|
T Consensus 91 ~~~~~~~iG~~~~~l~~l~~~--~~~~w~~L~~~~~~~~~~~ 130 (131)
T cd04026 91 RTTRNDFMGSLSFGVSELIKM--PVDGWYKLLNQEEGEYYNV 130 (131)
T ss_pred CCCCcceeEEEEEeHHHhCcC--ccCceEECcCccccccccC
Confidence 234678999999999999864 6677789988888876543
No 264
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=56.39 E-value=14 Score=35.56 Aligned_cols=45 Identities=9% Similarity=0.215 Sum_probs=32.0
Q ss_pred cccccceeEEEEec--CCCcccccceeecchhhhhhhcCcceeecccc
Q 001085 80 GKISERIYNFIVST--GLSKAGFVGEASIDFADYAEASKTSTVSLPLK 125 (1160)
Q Consensus 80 kk~~EkiYKfVVSm--GSSKSgiLGEasINlAdYaea~kp~tVSLPLK 125 (1160)
..+.++...|.|-- ..++..+||++.|.+++..... +.+.-+||+
T Consensus 77 ~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~-~~~~W~~l~ 123 (124)
T cd08387 77 QELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSE-KLDLWRKIQ 123 (124)
T ss_pred HHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCC-CcceEEECc
Confidence 34456667777752 3467889999999999987544 666666665
No 265
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=56.19 E-value=1.1e+02 Score=35.37 Aligned_cols=87 Identities=20% Similarity=0.284 Sum_probs=56.7
Q ss_pred hhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhh
Q 001085 847 NRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGD 926 (1160)
Q Consensus 847 ~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~ 926 (1160)
...+..+..++..+++|-+..++||..+..-.++-+..+..|+.+...+..+-...-+....=..+.-.+......|+..
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q 121 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQ 121 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888888888888888888777777777777777777777666555555555555555555554444444
Q ss_pred hhhhHHH
Q 001085 927 LKKKEDA 933 (1160)
Q Consensus 927 l~kke~~ 933 (1160)
+.--.+.
T Consensus 122 ~~~~~~~ 128 (314)
T PF04111_consen 122 YEYASNQ 128 (314)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4433333
No 266
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=55.95 E-value=31 Score=35.36 Aligned_cols=110 Identities=16% Similarity=0.222 Sum_probs=60.5
Q ss_pred eeeeccccccccceEEEEeecCCCCccccccccccc-cCccccCccchhhhhccccCCccccccceeEEEEe--cCCCcc
Q 001085 22 FHATQVAQLGENALMISVVPLDVGKPTVRLEKAAIE-DGCCRWLNSVYETVKFVREPKSGKISERIYNFIVS--TGLSKA 98 (1160)
Q Consensus 22 FhATQVPq~gwDkLfVSiVp~DtGKtTaKteKAaVr-nG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVS--mGSSKS 98 (1160)
..|-.+|........=.+|-+..|....||. .... +-+..|...+.= .+.++.. + ...|.|- -+.++.
T Consensus 7 i~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk-~~~~~t~nP~WNE~F~f---~v~~~~~----~-~l~v~V~d~~~~~~d 77 (150)
T cd04019 7 IEAQDLVPSDKNRVPEVFVKAQLGNQVLRTR-PSQTRNGNPSWNEELMF---VAAEPFE----D-HLILSVEDRVGPNKD 77 (150)
T ss_pred EEeECCCCCCCCCCCCeEEEEEECCEEeeeE-eccCCCCCCcccCcEEE---EecCccC----C-eEEEEEEEecCCCCC
Confidence 3455565543322222233344455444433 2222 346667654311 1223322 2 3344443 355678
Q ss_pred cccceeecchhhhhhh---cCcceeeccccCC----------CCCceeeEeeeee
Q 001085 99 GFVGEASIDFADYAEA---SKTSTVSLPLKYS----------RSKAVLHVSIQRV 140 (1160)
Q Consensus 99 giLGEasINlAdYaea---~kp~tVSLPLK~c----------nsGtVLHVtIQ~L 140 (1160)
.+||.+.|+|.++... ..+...-+||... .++.-|||.|+.-
T Consensus 78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~ 132 (150)
T cd04019 78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD 132 (150)
T ss_pred CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence 9999999999998643 3455667888865 3447889988874
No 267
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=55.92 E-value=5.7e+02 Score=33.06 Aligned_cols=29 Identities=28% Similarity=0.568 Sum_probs=20.6
Q ss_pred hHHHHhhhhhhhHHHHHHHHHHHHhhhhhh
Q 001085 899 CHNLKQALVEDESEKEKLRKQAFQLKGDLK 928 (1160)
Q Consensus 899 ~~~lk~~l~~~e~eke~l~kqv~~lk~~l~ 928 (1160)
..+|+..+ .++.+.-+|.-+|.+|||-+.
T Consensus 289 ~~~l~~~~-~e~~~r~kL~N~i~eLkGnIR 317 (670)
T KOG0239|consen 289 EENLVEKK-KEKEERRKLHNEILELKGNIR 317 (670)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhhcCce
Confidence 33444445 677888888889999988664
No 268
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=55.34 E-value=28 Score=35.91 Aligned_cols=43 Identities=28% Similarity=0.326 Sum_probs=34.9
Q ss_pred CcccccceeecchhhhhhhcCcceeeccc-----cCCCCCceeeEeeee
Q 001085 96 SKAGFVGEASIDFADYAEASKTSTVSLPL-----KYSRSKAVLHVSIQR 139 (1160)
Q Consensus 96 SKSgiLGEasINlAdYaea~kp~tVSLPL-----K~cnsGtVLHVtIQ~ 139 (1160)
....++|.++|.+++... -.+....+|| +.+..|+-|||.+|.
T Consensus 110 ~~~~~IG~~~i~l~~l~~-g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 110 VGAQLIGRAYIPVEDLLS-GEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred cCCcEEEEEEEEhHHccC-CCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 345799999999999875 5566778888 456688999999986
No 269
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.89 E-value=5.1e+02 Score=32.21 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=41.9
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHH
Q 001085 567 DLSDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELE 646 (1160)
Q Consensus 567 e~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~ 646 (1160)
.+-|+-+.+-.|..+++.+..-|..-.+-.-+-|-+ |..+.-.+..+|+-+-.+=++ +..|++|+..+.+.-+++.
T Consensus 287 ~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~p---ll~kkl~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~ 362 (521)
T KOG1937|consen 287 ALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQP---LLQKKLQLREELKNLETEDEE-IRRIQELEQDLEAVDEEIE 362 (521)
T ss_pred hcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHH
Confidence 366777788888888877776665555444444433 223333334444444444444 5555555555555544444
Q ss_pred H
Q 001085 647 K 647 (1160)
Q Consensus 647 ~ 647 (1160)
+
T Consensus 363 ~ 363 (521)
T KOG1937|consen 363 S 363 (521)
T ss_pred h
Confidence 3
No 270
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=54.88 E-value=66 Score=36.22 Aligned_cols=86 Identities=35% Similarity=0.450 Sum_probs=0.0
Q ss_pred HHHHH--HHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhccccCccCcCccccccCCC
Q 001085 885 VELLK--SELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEKKLKDSNRRASVSDGTRTTLRNNK 962 (1160)
Q Consensus 885 ~~~l~--se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~~~s~~~~~~~~~t~~~~~n~~ 962 (1160)
+.+|+ -++-.+|..|.++|..|-+...||+.|.+....|.+++..-.+.+..++.-
T Consensus 121 LktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E---------------------- 178 (290)
T COG4026 121 LKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVE---------------------- 178 (290)
T ss_pred HHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Q ss_pred CCCCCCChhHHHhHHHHHHHhhhhhhhHHHHHhhcchhhHHHhhhhhhHHHHHHHHHH
Q 001085 963 SAPVSQGSKEIANLRERIKLLEGQIKSKEIALEASTNSFVEKEKDLKNKIEELECRVE 1020 (1160)
Q Consensus 963 ~~~~~~~s~~~a~l~~~ik~~e~~ik~~~~a~~~s~~~~~~ke~~l~~~i~e~~~~~~ 1020 (1160)
.+.|.+..+.|.|.. -+|+.|..||+..++
T Consensus 179 ----------~s~LeE~~~~l~~ev------------------~~L~~r~~ELe~~~E 208 (290)
T COG4026 179 ----------NSRLEEMLKKLPGEV------------------YDLKKRWDELEPGVE 208 (290)
T ss_pred ----------HHHHHHHHHhchhHH------------------HHHHHHHHHhccccc
No 271
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=54.08 E-value=68 Score=31.51 Aligned_cols=107 Identities=11% Similarity=0.152 Sum_probs=61.3
Q ss_pred eeeeeccccccccceEEEEeecCCCCccccccccccccCccccCccchhhhhccccCCccccccceeEEEEec--CCCcc
Q 001085 21 QFHATQVAQLGENALMISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVST--GLSKA 98 (1160)
Q Consensus 21 qFhATQVPq~gwDkLfVSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVSm--GSSKS 98 (1160)
-..|..+|..+.-.-||-|-= + |+..+||. |..| .+|++.-.-... ...+..+ .+.|.|.- ..++.
T Consensus 10 Vi~A~~L~~~~~~DPYv~v~l-~-~~~~~kT~---v~~~----~nP~WnE~f~f~-~~~~~~~--~l~v~v~d~~~~~~d 77 (126)
T cd08400 10 VLEAHKLPVKHVPHPYCVISL-N-EVKVARTK---VREG----PNPVWSEEFVFD-DLPPDVN--SFTISLSNKAKRSKD 77 (126)
T ss_pred EEEeeCCCCCCCCCeeEEEEE-C-CEeEEEee---cCCC----CCCccCCEEEEe-cCCCCcC--EEEEEEEECCCCCCC
Confidence 346677777654444543322 1 22333332 3333 367765433332 2233222 34466653 34678
Q ss_pred cccceeecchhhhhhhcCcceeeccccCCCC-----CceeeEeeeee
Q 001085 99 GFVGEASIDFADYAEASKTSTVSLPLKYSRS-----KAVLHVSIQRV 140 (1160)
Q Consensus 99 giLGEasINlAdYaea~kp~tVSLPLK~cns-----GtVLHVtIQ~L 140 (1160)
.++|++.|.|+++.. ......-+||..... +.-|||.+++.
T Consensus 78 ~~iG~v~i~l~~l~~-~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 78 SEIAEVTVQLSKLQN-GQETDEWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred CeEEEEEEEHhHccC-CCcccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 999999999999876 455667888877532 24578888764
No 272
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=53.91 E-value=18 Score=35.29 Aligned_cols=70 Identities=23% Similarity=0.206 Sum_probs=42.1
Q ss_pred CCccccccccccccCccccCccchhhhhccccCCccccccceeEEEEe-cCCC---cccccceeecchhhhhhhcCccee
Q 001085 45 GKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVS-TGLS---KAGFVGEASIDFADYAEASKTSTV 120 (1160)
Q Consensus 45 GKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVS-mGSS---KSgiLGEasINlAdYaea~kp~tV 120 (1160)
|....||. ..-.+-+..|..+++=.+. + .....|-|. .++. ...+||.+.|++.+......+..-
T Consensus 31 ~~~~~kT~-v~~~t~nP~Wne~f~~~~~----~------~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~ 99 (123)
T cd08382 31 GGQTHSTD-VAKKTLDPKWNEHFDLTVG----P------SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQ 99 (123)
T ss_pred CccceEcc-EEcCCCCCcccceEEEEeC----C------CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccc
Confidence 45556553 2222346777766654442 1 235556554 3322 247999999999999877655455
Q ss_pred ecccc
Q 001085 121 SLPLK 125 (1160)
Q Consensus 121 SLPLK 125 (1160)
.+||+
T Consensus 100 ~~~l~ 104 (123)
T cd08382 100 RLDLR 104 (123)
T ss_pred eeEee
Confidence 66663
No 273
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=53.60 E-value=71 Score=29.93 Aligned_cols=52 Identities=37% Similarity=0.426 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhh
Q 001085 883 AAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEKKL 941 (1160)
Q Consensus 883 ~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~ 941 (1160)
..|..|+-|++.|+.+...|+ .+.+.|+....+|+.+-..=.+-+.++-.|+
T Consensus 18 eti~~Lq~e~eeLke~n~~L~-------~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELK-------EENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666677777777777776 6677777777777766666666666555554
No 274
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=52.97 E-value=2e+02 Score=29.49 Aligned_cols=94 Identities=27% Similarity=0.337 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh-hhcchhhhH--------hHHHHHHHHhhhhcccCCCCCCCC
Q 001085 480 LEQKIMDLYSEIEIYRRDKDELETQMEQLALDYEILKQ-ENHDISYKL--------EQSQLQEQLKMQYECSSIGNGSEP 550 (1160)
Q Consensus 480 L~~KI~eL~~ele~y~~~~~eLe~k~eqL~~dye~LkQ-EN~dis~KL--------Eqsqlqe~l~~~~ecSs~~~~~~l 550 (1160)
+-.|.+.|..+++-|-..+..|+.+..+=.+=.+.|-. +-+.-.||| +..+......-+-+.
T Consensus 10 ~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlef--------- 80 (120)
T KOG3478|consen 10 EANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEF--------- 80 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHH---------
Confidence 34456666667777777888888877652221222211 223334776 222222222111111
Q ss_pred chhhhhhHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 001085 551 ETQVESLENELKIKSKDLSDSLAIINELETHIEGLASELKKQSREFSNFQAT 602 (1160)
Q Consensus 551 e~~iesle~elk~~~~e~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst 602 (1160)
-.+-|+-++++++++++++++|+....++|.+
T Consensus 81 --------------------I~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~ 112 (120)
T KOG3478|consen 81 --------------------ISKEIKRLENQIRDSQEEFEKQREAVIKLQQA 112 (120)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11256777888888888888886665555544
No 275
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=52.49 E-value=41 Score=32.35 Aligned_cols=95 Identities=12% Similarity=0.104 Sum_probs=47.8
Q ss_pred eeeeccccccccc---eE--EEEeecCCCCccccccccccccCccccCccchhhhhccccCCccccccceeEEEEec-C-
Q 001085 22 FHATQVAQLGENA---LM--ISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVST-G- 94 (1160)
Q Consensus 22 FhATQVPq~gwDk---Lf--VSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVSm-G- 94 (1160)
.+|.++|...... -| |.+.|......+.||. ..-.+.+..|...+.=.+ ....+......|-|.- +
T Consensus 23 i~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~-v~~~~~nP~wne~f~f~i------~~~~l~~~~l~i~v~~~~~ 95 (127)
T cd04030 23 HKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTS-VKKDNLNPVFDETFEFPV------SLEELKRRTLDVAVKNSKS 95 (127)
T ss_pred EEEECCCCccCCCCCCceEEEEEEcCCCCCceEecc-cccCCCCCEECeEEEEec------CHHHhcCCEEEEEEEECCc
Confidence 4566777653321 23 3444533223344332 222233444544332222 2233445666766653 2
Q ss_pred --CCcccccceeecchhhhhhhcCcceeeccc
Q 001085 95 --LSKAGFVGEASIDFADYAEASKTSTVSLPL 124 (1160)
Q Consensus 95 --SSKSgiLGEasINlAdYaea~kp~tVSLPL 124 (1160)
.++..+||++.|++++.... ...+.-+||
T Consensus 96 ~~~~~~~~iG~~~i~l~~l~~~-~~~~~W~~L 126 (127)
T cd04030 96 FLSREKKLLGQVLIDLSDLDLS-KGFTQWYDL 126 (127)
T ss_pred ccCCCCceEEEEEEeccccccc-CCccceEEC
Confidence 25789999999999996442 333434443
No 276
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=52.12 E-value=5.3e+02 Score=31.61 Aligned_cols=159 Identities=17% Similarity=0.246 Sum_probs=64.3
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHH--HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHH
Q 001085 588 ELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIK--ELEAYIKNLEEELEKQAQVYEADLEVVTRAKVE 665 (1160)
Q Consensus 588 Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~--~Le~qv~sl~eel~~Qaq~f~~dl~a~~~~k~e 665 (1160)
|+..-+.++.-+|.+-.....++..+...++.+...|..+...+. .=-+.|.+-...|....+.+...++.+... +|
T Consensus 152 Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~-VE 230 (424)
T PF03915_consen 152 EVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDL-VE 230 (424)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 333333445555555555555555566666666554444322222 445667777778888887887777665443 22
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHhh
Q 001085 666 QEQRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELR-MQKRHLEEMINKASEEALSL 744 (1160)
Q Consensus 666 qE~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr-~~~~~LEe~L~~a~~el~~~ 744 (1160)
.=++. -+-|++|- +...++.+.+|+.+++..+..+.+. +..++ .=++..|..|+++.+|=+-+
T Consensus 231 ~LRkD----V~~RgvRp-~~~qle~v~kdi~~a~~~L~~m~~~-----------i~~~kp~WkKiWE~EL~~V~eEQqfL 294 (424)
T PF03915_consen 231 DLRKD----VVQRGVRP-SPKQLETVAKDISRASKELKKMKEY-----------IKTEKPIWKKIWESELQKVCEEQQFL 294 (424)
T ss_dssp HHHHH----HHHH------HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHcCCcC-CHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 12344443 3445677777777777666333221 11111 12478899999999988888
Q ss_pred hhhhHHHHHHHHHHHhhhhH
Q 001085 745 RDDYETKLCQLSNQLNVKTD 764 (1160)
Q Consensus 745 ~~~~e~Ki~~L~~qL~~~~~ 764 (1160)
+.| +--+..|...|..-+.
T Consensus 295 ~~Q-edL~~DL~eDl~k~~e 313 (424)
T PF03915_consen 295 KLQ-EDLLSDLKEDLKKASE 313 (424)
T ss_dssp HHH-HHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHH
Confidence 776 3355566555544444
No 277
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=52.05 E-value=4.3e+02 Score=30.49 Aligned_cols=52 Identities=12% Similarity=0.186 Sum_probs=27.1
Q ss_pred HHHhhhhhhHHHhHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHH
Q 001085 618 KEQSKGYSDSLATIK-ELEAYIKNLEEELEKQAQVYEADLEVVTRAKVEQEQR 669 (1160)
Q Consensus 618 K~q~~e~S~~l~~i~-~Le~qv~sl~eel~~Qaq~f~~dl~a~~~~k~eqE~r 669 (1160)
=.|..-|-.+..+|+ .-..++..+..+|.+=...++.++..|...=..-+.+
T Consensus 44 Lqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~ak 96 (258)
T PF15397_consen 44 LQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAK 96 (258)
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 334455555555555 3445555566666655555666555554443333333
No 278
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=51.52 E-value=6.6e+02 Score=32.51 Aligned_cols=78 Identities=26% Similarity=0.273 Sum_probs=56.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001085 658 VVTRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLEEMINKA 737 (1160)
Q Consensus 658 a~~~~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a 737 (1160)
.++-.-..|.++++-.|..|---|-+=..+-|-||+|+-+.+ +=|.--++-++|||+|......||..-...
T Consensus 129 vLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrt--------sLETqKlDLmaevSeLKLkltalEkeq~e~ 200 (861)
T KOG1899|consen 129 VLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRT--------SLETQKLDLMAEVSELKLKLTALEKEQNET 200 (861)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhh--------hHHHHHhHHHHHHHHhHHHHHHHHHHhhhH
Confidence 444455568888888888888777777778889999987642 246667888999999999888887555444
Q ss_pred HHHHHh
Q 001085 738 SEEALS 743 (1160)
Q Consensus 738 ~~el~~ 743 (1160)
...+|.
T Consensus 201 E~K~R~ 206 (861)
T KOG1899|consen 201 EKKLRL 206 (861)
T ss_pred HHHHHh
Confidence 444443
No 279
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=51.32 E-value=92 Score=29.12 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 001085 879 DEKEAAVELLKSELELLKVQ 898 (1160)
Q Consensus 879 deke~~~~~l~se~~~l~~q 898 (1160)
.||+..|..|+.|-+.|..+
T Consensus 8 ~EKDe~Ia~L~eEGekLSk~ 27 (74)
T PF12329_consen 8 AEKDEQIAQLMEEGEKLSKK 27 (74)
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 35555566666665555443
No 280
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=51.12 E-value=5.7e+02 Score=31.65 Aligned_cols=19 Identities=32% Similarity=0.275 Sum_probs=10.6
Q ss_pred HHHHHHHHhhhhhHHHHHH
Q 001085 674 EETLRKTRLKNANTAERLQ 692 (1160)
Q Consensus 674 EeaLrktR~~na~~~e~Lq 692 (1160)
+++|-|...+.++.+|+||
T Consensus 285 rEil~k~eReasle~Enlq 303 (502)
T KOG0982|consen 285 REILIKKEREASLEKENLQ 303 (502)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555
No 281
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=51.04 E-value=79 Score=33.54 Aligned_cols=34 Identities=32% Similarity=0.392 Sum_probs=21.9
Q ss_pred HHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhh
Q 001085 893 ELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGD 926 (1160)
Q Consensus 893 ~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~ 926 (1160)
..+.....+||.-|..-+.+.+.|++|...|..|
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455555555566777888888888777544
No 282
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=50.88 E-value=5.9e+02 Score=31.74 Aligned_cols=49 Identities=12% Similarity=0.303 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhhhhcccccccccchhhhhHhhhhhh
Q 001085 1104 DMLIELDSLKEKNQCMESELKDMQERYSEISLKFAEVEGERQKLVMTLRNLK 1155 (1160)
Q Consensus 1104 ~~~~~~~~lk~~~~~~e~el~em~~ryse~sl~faevegerq~lvm~~rnl~ 1155 (1160)
+|.+-+..+.+.-..+..-|...+..|....=++.. | |..|+-.++.|+
T Consensus 377 ~Lydkl~~f~~~~~klG~~L~~a~~~y~~A~~~L~~--G-rgnli~~a~~~k 425 (475)
T PRK10361 377 KLYDKMRLFVDDMSAIGQSLDKAQDNYRQAMKKLSS--G-RGNVLAQAEAFR 425 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c-CCchHHHHHHHH
Confidence 344555556666667777777777778776544432 2 445666666666
No 283
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=50.37 E-value=98 Score=28.38 Aligned_cols=51 Identities=31% Similarity=0.422 Sum_probs=43.8
Q ss_pred HHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhH
Q 001085 818 EAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSV 868 (1160)
Q Consensus 818 ~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~ 868 (1160)
+|--|..+..+|.++|.++-.++--|+.......+|..+|..++++.+.+.
T Consensus 9 EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 9 EIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344677888899999999999999999999999999999999998877643
No 284
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=50.35 E-value=18 Score=36.05 Aligned_cols=55 Identities=29% Similarity=0.481 Sum_probs=35.4
Q ss_pred ccccccCccccCccchhhh-hccccCCccccccceeEEEEe-cC-CCcccccceeecchhhhh
Q 001085 53 KAAIEDGCCRWLNSVYETV-KFVREPKSGKISERIYNFIVS-TG-LSKAGFVGEASIDFADYA 112 (1160)
Q Consensus 53 KAaVrnG~C~W~dpIyETv-kl~qD~kTkk~~EkiYKfVVS-mG-SSKSgiLGEasINlAdYa 112 (1160)
|+.|..++| +|+|--+ .| +..-.+++.+...|-|. .| .++.-+||++.|.|+++.
T Consensus 56 kT~v~~~t~---nPvfNE~F~f--~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~ 113 (128)
T cd08392 56 KTAVKKGTV---NPVFNETLKY--VVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWD 113 (128)
T ss_pred ecccccCCC---CCccceEEEE--EcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcc
Confidence 556777776 4555332 33 13334566666666665 44 468889999999999983
No 285
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=50.34 E-value=4.9e+02 Score=30.71 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 001085 884 AVELLKSELELLKVQCHNL 902 (1160)
Q Consensus 884 ~~~~l~se~~~l~~q~~~l 902 (1160)
....|+.+++..+..|+.|
T Consensus 343 ~~~~L~r~~~~~~~~y~~l 361 (444)
T TIGR03017 343 EMSVLQRDVENAQRAYDAA 361 (444)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 286
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=50.21 E-value=34 Score=32.94 Aligned_cols=98 Identities=16% Similarity=0.159 Sum_probs=54.0
Q ss_pred EEEEeeeeeccccccccce-----EEEEeecCCCCc--cccccccccccCccccCccchhhhhccccCCccccccceeEE
Q 001085 17 VFKLQFHATQVAQLGENAL-----MISVVPLDVGKP--TVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNF 89 (1160)
Q Consensus 17 vFKLqFhATQVPq~gwDkL-----fVSiVp~DtGKt--TaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKf 89 (1160)
.+.|+..|.++|...|... -|.+.+...|+. ..||+ ..-.+-+..|...++=.+. .+ . -...+|
T Consensus 2 ~~~~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~-vi~~t~nP~wne~f~f~~~---~~---~--~~~l~~ 72 (120)
T cd04048 2 KVELSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTE-VIKNNLNPDFVTTFTVDYY---FE---E--VQKLRF 72 (120)
T ss_pred EEEEEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEe-EeCCCCCCCceEEEEEEEE---eE---e--eeEEEE
Confidence 3568899999987665442 233434332222 12222 2222334445544432211 11 1 123445
Q ss_pred EEe-cC-----CCcccccceeecchhhhhhhcCcceeeccc
Q 001085 90 IVS-TG-----LSKAGFVGEASIDFADYAEASKTSTVSLPL 124 (1160)
Q Consensus 90 VVS-mG-----SSKSgiLGEasINlAdYaea~kp~tVSLPL 124 (1160)
.|. -. .++..+||++.|++++.+.. ....+.+||
T Consensus 73 ~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~-~~~~~~~~l 112 (120)
T cd04048 73 EVYDVDSKSKDLSDHDFLGEAECTLGEIVSS-PGQKLTLPL 112 (120)
T ss_pred EEEEecCCcCCCCCCcEEEEEEEEHHHHhcC-CCcEEEEEc
Confidence 554 12 56888999999999999863 456677777
No 287
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=50.19 E-value=5.8e+02 Score=31.49 Aligned_cols=263 Identities=21% Similarity=0.177 Sum_probs=0.0
Q ss_pred ccccccccCCCCCCCCCcccCCcccccchhhhhhcccchHHHHHHHHHHHHHHHhhhhhhHHHHHHH-------------
Q 001085 254 HQKSQWEWSAGSDQGISTDDSTNGFQDTFTRERSQQASDIEIEKLKSELVALARQADLSELELQTLR------------- 320 (1160)
Q Consensus 254 hq~S~~dwS~~S~~~~Std~stnss~d~l~rerl~eAse~~iEkLKsE~~sL~Rqad~s~lELQtLR------------- 320 (1160)
+.++..+--++........-|.+++....-++-....+...-+.|-+-|+||..+-.++..||++|+
T Consensus 4 ~~~~~~~~~~~~~~as~~meSscss~ss~~GG~~~p~sP~~~e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l 83 (552)
T KOG2129|consen 4 PKRPTPKNEALHIDASGRMESSCSSHSSHSGGGHEPFSPSPGESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPL 83 (552)
T ss_pred CCCCCCCcccccccccccccCCcccccCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchh
Q ss_pred HHHHHHhhhhhhHHHHHHH--hHHHHhHHHHHHHHH----------------HhhhhhhhHHHHhccccccCCCchHHHH
Q 001085 321 KQIVKESKRAQDLSREVIS--LKEEKDLLKLDCEKL----------------KTFQKRMDEAKVRNKLHFQGGDPWVLLE 382 (1160)
Q Consensus 321 KQi~kEsKrgqdLs~EVs~--Lk~ERD~LK~E~EqL----------------Ks~~k~~~ea~~~~rl~~e~~D~~~~le 382 (1160)
++-..++--..+-..|.++ |-.+.-+|+.|-|-| +..++-..+ .-.+ .++-
T Consensus 84 ~~Asv~IQaraeqeeEfisntLlkkiqal~keketla~~Ye~eee~lTn~Lsrkl~qLr~e---k~~l--------Eq~l 152 (552)
T KOG2129|consen 84 LLASVEIQARAEQEEEFISNTLLKKIQALFKEKETLATVYEVEEEFLTNPLSRKLKQLRHE---KLPL--------EQLL 152 (552)
T ss_pred hhhhhHHhhccchHHHHHHHHHHHHHHHhhccccccchhhhhhhhhccCchhHHHHHHHhh---hccH--------HHHH
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHhhhhh--HHHHHHhhhHHHHHHHHhhhhcccccccCcccchHHhhhhhcCCCCCchHh
Q 001085 383 EIRQELSYEKDLNANLRLQLQKTQESN--AELILAVQDLDEMLEQKNREISNHSNKSGSYVNAKELRRNISKSQTDDDED 460 (1160)
Q Consensus 383 ELk~EL~~EKelNaNL~LQLqKTQESN--~ELvlaVqDLEEmLEQk~~EIs~Ls~~~~~~~n~~e~~~~l~~~etddde~ 460 (1160)
|..+|....|-+|.--.++=+-.-+.| --|.-.-=+||-+|||..--|.+ .+-+.+.+-++|.+-+
T Consensus 153 eqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN------------~LwKrmdkLe~ekr~L 220 (552)
T KOG2129|consen 153 EQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVN------------SLWKRMDKLEQEKRYL 220 (552)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHH------------HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhcc-----------ChhhHHHHHHHHHHHHHHHHHhhhhhHHHH----HHHHHHHHHHHHHhhhhcchhhh
Q 001085 461 QKALEELVKEHR-----------DVKETYLLEQKIMDLYSEIEIYRRDKDELE----TQMEQLALDYEILKQENHDISYK 525 (1160)
Q Consensus 461 q~~l~~l~ke~~-----------d~kE~~~L~~KI~eL~~ele~y~~~~~eLe----~k~eqL~~dye~LkQEN~dis~K 525 (1160)
|++|+.-+-... ..++...+..-|+-|..|++.||.+..--. +++.|+..+--....||..+--|
T Consensus 221 q~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrk 300 (552)
T KOG2129|consen 221 QKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRK 300 (552)
T ss_pred HHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred H---------------hHHHHHHHHhhhh
Q 001085 526 L---------------EQSQLQEQLKMQY 539 (1160)
Q Consensus 526 L---------------Eqsqlqe~l~~~~ 539 (1160)
| |..-.++..+++|
T Consensus 301 L~~e~erRealcr~lsEsesslemdeery 329 (552)
T KOG2129|consen 301 LINELERREALCRMLSESESSLEMDEERY 329 (552)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHH
No 288
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=49.93 E-value=4e+02 Score=29.57 Aligned_cols=21 Identities=24% Similarity=0.110 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHHHHhhhhhhh
Q 001085 790 DSGALSLEIQQLKADTEKLMM 810 (1160)
Q Consensus 790 ~~~~~~~eiq~l~~~~~~l~~ 810 (1160)
.++.|..|.+.|.+++..|..
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~ 63 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLER 63 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544443
No 289
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=49.86 E-value=7.9e+02 Score=32.95 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=41.8
Q ss_pred HHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhh
Q 001085 740 EALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADT 805 (1160)
Q Consensus 740 el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~ 805 (1160)
+.+-++.+|+.++-.|..++.--...+..+..||...-.+-..+..+....+.++..+|..|+..+
T Consensus 499 ~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~qklk~le~q~s~lkk~l 564 (913)
T KOG0244|consen 499 EKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQKLKSLETQISLLKKKL 564 (913)
T ss_pred hhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Confidence 445567888888888888877777777777777765544444455555555555555555554443
No 290
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=49.15 E-value=4.7e+02 Score=30.60 Aligned_cols=92 Identities=18% Similarity=0.224 Sum_probs=63.6
Q ss_pred HHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHH
Q 001085 780 LEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIAL 859 (1160)
Q Consensus 780 l~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~ 859 (1160)
|-...+.-..-+.+...+.|.+++.+.+...+.+.|-.+++.+ +.||+.+.+ -.++|-.-+-.-.+|.+..=.-
T Consensus 103 l~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierr---k~ElEr~rk---Rle~LqsiRP~~MdEyE~~Eee 176 (338)
T KOG3647|consen 103 LLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERR---KAELERTRK---RLEALQSIRPAHMDEYEDCEEE 176 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHH---HHHHHHhcchHHHHHHHHHHHH
Confidence 3344455555668888899999999999999999998888655 347776663 3445545555556667776667
Q ss_pred HHHHHHhhHHHHHHHhhh
Q 001085 860 VKKEAESSVEEVQRIQRI 877 (1160)
Q Consensus 860 ~k~eae~~~~el~~~~~~ 877 (1160)
|+|.-+.++.-++++..+
T Consensus 177 Lqkly~~Y~l~f~nl~yL 194 (338)
T KOG3647|consen 177 LQKLYQRYFLRFHNLDYL 194 (338)
T ss_pred HHHHHHHHHHHHhhHHHH
Confidence 777777777666665543
No 291
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=49.15 E-value=3.4e+02 Score=30.52 Aligned_cols=14 Identities=29% Similarity=0.392 Sum_probs=5.3
Q ss_pred HHHHHHHHHhHHHH
Q 001085 890 SELELLKVQCHNLK 903 (1160)
Q Consensus 890 se~~~l~~q~~~lk 903 (1160)
-|+.-|+.+.|.+.
T Consensus 88 eey~~Lk~~in~~R 101 (230)
T PF10146_consen 88 EEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 292
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=49.03 E-value=2.4e+02 Score=26.69 Aligned_cols=53 Identities=23% Similarity=0.288 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhh-hHHHHHHHHHH
Q 001085 750 TKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDS-GALSLEIQQLK 802 (1160)
Q Consensus 750 ~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~-~~~~~eiq~l~ 802 (1160)
.+|..+...+..+...++..+..++.....+......-...+ ..|..=++.|.
T Consensus 3 ~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~ 56 (127)
T smart00502 3 EALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALN 56 (127)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666666666666666654443333333 44444444443
No 293
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=47.89 E-value=45 Score=41.60 Aligned_cols=55 Identities=31% Similarity=0.313 Sum_probs=24.2
Q ss_pred hHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHh
Q 001085 788 EEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRA 846 (1160)
Q Consensus 788 ~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~ 846 (1160)
++.......||..|+...+ .+..+++.+++-+.+-.+...+..+...-.-+..+|
T Consensus 322 E~lL~~hE~Ei~~Lk~~~~----~~k~Il~~v~k~~~l~~~~~~Le~~~~D~~Rl~~RG 376 (619)
T PF03999_consen 322 EELLELHEEEIERLKEEYE----SRKPILELVEKWESLWEEMEELEESSKDPSRLNNRG 376 (619)
T ss_dssp -------------HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCGG----
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhcccc
Confidence 4455666667776666654 455777878777777777665555555544555444
No 294
>PRK10884 SH3 domain-containing protein; Provisional
Probab=47.89 E-value=1.2e+02 Score=33.51 Aligned_cols=19 Identities=26% Similarity=0.057 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhhhhhhhhh
Q 001085 794 LSLEIQQLKADTEKLMMDN 812 (1160)
Q Consensus 794 ~~~eiq~l~~~~~~l~~e~ 812 (1160)
+..+++.|+.+++.+..++
T Consensus 137 L~~~n~~L~~~l~~~~~~~ 155 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKV 155 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333
No 295
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=47.75 E-value=3.3e+02 Score=27.97 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q 001085 643 EELEKQAQVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLK 683 (1160)
Q Consensus 643 eel~~Qaq~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~ 683 (1160)
.=|....+....+++.....+.+-+....+.++.|+.+|-+
T Consensus 34 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~e 74 (141)
T PRK08476 34 KFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREE 74 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556677777777777777776666777777777655
No 296
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=47.50 E-value=3.1e+02 Score=27.57 Aligned_cols=8 Identities=25% Similarity=0.356 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 001085 580 THIEGLAS 587 (1160)
Q Consensus 580 ~qi~~LE~ 587 (1160)
+++..++.
T Consensus 12 ~~~~~l~~ 19 (202)
T PF01442_consen 12 SRTEELEE 19 (202)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 297
>smart00338 BRLZ basic region leucin zipper.
Probab=46.56 E-value=53 Score=29.22 Aligned_cols=40 Identities=25% Similarity=0.408 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhc
Q 001085 481 EQKIMDLYSEIEIYRRDKDELETQMEQLALDYEILKQENH 520 (1160)
Q Consensus 481 ~~KI~eL~~ele~y~~~~~eLe~k~eqL~~dye~LkQEN~ 520 (1160)
++.|.+|..++..+..++..|..++..|...+..|++++.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577788888888888888888888888888887777653
No 298
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=46.25 E-value=5.3e+02 Score=29.94 Aligned_cols=29 Identities=14% Similarity=0.046 Sum_probs=14.1
Q ss_pred HHHHhHHHHHhhhhhhHhhhHHHHHHHHH
Q 001085 773 INNLSNQLEEQKKHDEEDSGALSLEIQQL 801 (1160)
Q Consensus 773 l~~~s~ql~~~~~~~~~~~~~~~~eiq~l 801 (1160)
|++-..|...++.+--.+|..|.+-++-|
T Consensus 96 Leddlsqt~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 96 LEDDLSQTHAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 34444455555555445555554444444
No 299
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=46.23 E-value=4.8e+02 Score=29.40 Aligned_cols=30 Identities=20% Similarity=0.260 Sum_probs=15.9
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 001085 906 LVEDESEKEKLRKQAFQLKGDLKKKEDALN 935 (1160)
Q Consensus 906 l~~~e~eke~l~kqv~~lk~~l~kke~~~~ 935 (1160)
-..-+.|.+.|+.++...+.++.+....+.
T Consensus 98 ~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~ 127 (246)
T PF00769_consen 98 SERKEEEAEELQEELEEAREDEEEAKEELL 127 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666655555444443
No 300
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=45.67 E-value=1.1e+02 Score=31.90 Aligned_cols=63 Identities=33% Similarity=0.454 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHhHHHHhHHHHHHHHHHhhhh
Q 001085 292 DIEIEKLKSELVALARQADLSELELQTLRKQIVKESKRAQDLSREVISLKEEKDLLKLDCEKLKTFQK 359 (1160)
Q Consensus 292 e~~iEkLKsE~~sL~Rqad~s~lELQtLRKQi~kEsKrgqdLs~EVs~Lk~ERD~LK~E~EqLKs~~k 359 (1160)
+..|..|+.++..|......+..+|..|++.... .+|...|..|+.|+..|...++.|++...
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~-----~el~~~i~~l~~e~~~l~~kL~~l~~~~~ 140 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEPTN-----EELREEIEELEEEIEELEEKLEKLRSGSK 140 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4467788888888877777777777777776655 47888889999888888888888887433
No 301
>PF15294 Leu_zip: Leucine zipper
Probab=45.53 E-value=5.5e+02 Score=29.93 Aligned_cols=139 Identities=27% Similarity=0.327 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhh---------hhhhHHHHHHHHH
Q 001085 791 SGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANR---------ERDELESTIALVK 861 (1160)
Q Consensus 791 ~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~---------e~~~l~~~~~~~k 861 (1160)
+..+..+|..|++++++|+.-...+..++...-. |=..++..+.++.....+... +...|+.++|-+|
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~---Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK 203 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALD---EKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALK 203 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHH
Q ss_pred HHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHH---HHHHHHhhhhhhhhHHHHHHHH
Q 001085 862 KEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKL---RKQAFQLKGDLKKKEDALNSLE 938 (1160)
Q Consensus 862 ~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l---~kqv~~lk~~l~kke~~~~~~e 938 (1160)
.+.++.+ ..++.-...|+..|..-+...-.+..-|+.-+.|-++. ..+...+|.=|-+|-+.+..+-
T Consensus 204 ~e~ek~~----------~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~QiKeLR 273 (278)
T PF15294_consen 204 SELEKAL----------QDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNEQIKELR 273 (278)
T ss_pred HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhccHHHHHHH
Q ss_pred Hhhh
Q 001085 939 KKLK 942 (1160)
Q Consensus 939 k~~~ 942 (1160)
++|.
T Consensus 274 krl~ 277 (278)
T PF15294_consen 274 KRLA 277 (278)
T ss_pred HHhc
No 302
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=45.43 E-value=9.1e+02 Score=32.40 Aligned_cols=66 Identities=23% Similarity=0.242 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH---HHhhhhhhHHHHHHHhHHHHhHHHHHHHHHHhhhh
Q 001085 294 EIEKLKSELVALARQADLSELELQTLRKQIV---KESKRAQDLSREVISLKEEKDLLKLDCEKLKTFQK 359 (1160)
Q Consensus 294 ~iEkLKsE~~sL~Rqad~s~lELQtLRKQi~---kEsKrgqdLs~EVs~Lk~ERD~LK~E~EqLKs~~k 359 (1160)
-|..+..+++.+.-.-+..+.+..++++-+. .++.|...|.-|+...+..-+++...++-...++.
T Consensus 182 ~iNq~l~klkq~~~ei~e~eke~a~yh~lLe~r~~~~~rl~~l~~elr~~~~~i~~~~~~v~l~~~lqE 250 (984)
T COG4717 182 QINQLLEKLKQERNEIDEAEKEYATYHKLLESRRAEHARLAELRSELRADRDHIRALRDAVELWPRLQE 250 (984)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4555555555666666777777788887776 45667778888888888888888888887766655
No 303
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=44.39 E-value=79 Score=34.81 Aligned_cols=62 Identities=21% Similarity=0.362 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhHH----HHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHH
Q 001085 855 STIALVKKEAESSVE----EVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKL 916 (1160)
Q Consensus 855 ~~~~~~k~eae~~~~----el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l 916 (1160)
...+++|.|.|..++ +|..+..-+--...=++.+.-+|.+++.|.+-|...|..-..|-+.|
T Consensus 128 ~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 128 SKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677777766644 33332211111222344455556666666666665555554444444
No 304
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=43.97 E-value=6.3e+02 Score=30.14 Aligned_cols=282 Identities=22% Similarity=0.279 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 001085 638 IKNLEEELEKQAQVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQMASSFDANEKVAMKAL 717 (1160)
Q Consensus 638 v~sl~eel~~Qaq~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~ 717 (1160)
|.....+|......+..+++.|...+. +.|.||..++.--+++.+.|.-==.|....+ .+|.=|.-. .
T Consensus 55 i~~wk~eL~~~l~~~~~Ei~~L~~~K~-------~le~aL~~~~~pl~i~~ecL~~R~~R~~~dl--v~D~ve~eL---~ 122 (384)
T PF03148_consen 55 IRFWKNELERELEELDEEIDLLEEEKR-------RLEKALEALRKPLSIAQECLSLREKRPGIDL--VHDEVEKEL---L 122 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhcCcHHHHHHHHHHHhCCCCccc--CCCcHHHHH---H
Confidence 334445555566567777777765543 3444588888888888888874445544444 455544444 5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhH--HHHHHHHHHHHHhHHHHHh---hhhhhH---
Q 001085 718 AEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTD--QIEQMLKEINNLSNQLEEQ---KKHDEE--- 789 (1160)
Q Consensus 718 ~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~--~~e~m~~el~~~s~ql~~~---~~~~~~--- 789 (1160)
.|+.-++.-...|+..+..|.++|+.++. =-..|..-+..|.. .|+.....|...|..+..- -+....
T Consensus 123 kE~~li~~~~~lL~~~l~~~~eQl~~lr~----ar~~Le~Dl~dK~~A~~ID~~~~~L~~~S~~i~~~~~~~r~~~~~~t 198 (384)
T PF03148_consen 123 KEVELIENIKRLLQRTLEQAEEQLRLLRA----ARYRLEKDLSDKFEALEIDTQCLSLNNNSTNISYKPGSTRIPKNSST 198 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCcccCCcccccccCCC
Confidence 69999999999999999999999999776 34445555555544 3444444454444433111 000000
Q ss_pred --hhhHHHHHH----HHHHHhhhhhhhhhhhhhHH---------HHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHH
Q 001085 790 --DSGALSLEI----QQLKADTEKLMMDNKSLSEE---------AEQKESLRVELAQMKTTVKEYELLIQRANRERDELE 854 (1160)
Q Consensus 790 --~~~~~~~ei----q~l~~~~~~l~~e~~~l~e~---------~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~ 854 (1160)
.-..|+..+ +.....-..|+...+.+..+ ..-...|+.-...++..-.+.+..+.+...++..++
T Consensus 199 p~~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e 278 (384)
T PF03148_consen 199 PESWEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEME 278 (384)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 002222211 11111111222222222111 111233444444455555555555555555555555
Q ss_pred HHHHHHHH----------HHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhh
Q 001085 855 STIALVKK----------EAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLK 924 (1160)
Q Consensus 855 ~~~~~~k~----------eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk 924 (1160)
..|..|++ .|++-++.=..=-...-=++.+--.|..||..|+.-...|+..|.+-+.....|.+....|.
T Consensus 279 ~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le 358 (384)
T PF03148_consen 279 KNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLE 358 (384)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554442 23333322111111223345566677888899999999999999999999999999999999
Q ss_pred hhhhhhHHHHH
Q 001085 925 GDLKKKEDALN 935 (1160)
Q Consensus 925 ~~l~kke~~~~ 935 (1160)
.+|.-|...+.
T Consensus 359 ~di~~K~~sL~ 369 (384)
T PF03148_consen 359 EDIAVKNNSLF 369 (384)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 305
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=43.63 E-value=41 Score=33.75 Aligned_cols=68 Identities=12% Similarity=0.094 Sum_probs=42.8
Q ss_pred CccccCccchhhhhccccCC-------ccccccceeEEEEec--CCCcccccceeecchhhhhhhcCcceeeccccCC
Q 001085 59 GCCRWLNSVYETVKFVREPK-------SGKISERIYNFIVST--GLSKAGFVGEASIDFADYAEASKTSTVSLPLKYS 127 (1160)
Q Consensus 59 G~C~W~dpIyETvkl~qD~k-------Tkk~~EkiYKfVVSm--GSSKSgiLGEasINlAdYaea~kp~tVSLPLK~c 127 (1160)
-+..|...++=.+....+.. ...+.....+|.|-- +..+..++|++.|.+.+... ..+...-+||...
T Consensus 45 ~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~-~~~~~~W~~L~~~ 121 (137)
T cd08675 45 NNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQ-AGSHQAWYFLQPR 121 (137)
T ss_pred CCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccC-CCcccceEecCCc
Confidence 35566665554444332211 123355667777763 33588999999999999874 4566777788774
No 306
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=43.27 E-value=4.4e+02 Score=28.16 Aligned_cols=68 Identities=25% Similarity=0.328 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 001085 792 GALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAE 865 (1160)
Q Consensus 792 ~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae 865 (1160)
.+|...++..+.+++.|..++..|--+.+.+-.+|...+ .+...+=..+..++.+|...++.+..+..
T Consensus 39 e~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e------~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r 106 (158)
T PF09744_consen 39 ESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAE------EELLELEDQWRQERKDLQSQVEQLEEENR 106 (158)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555544443333322222221 12222223444445555555555544443
No 307
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=43.26 E-value=40 Score=34.61 Aligned_cols=98 Identities=21% Similarity=0.215 Sum_probs=57.6
Q ss_pred eeeeccccccccceEEEEeecCCCCccccccccccccCccccCccchhhhhccccCCccccccceeEEEEe--cCCCccc
Q 001085 22 FHATQVAQLGENALMISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVS--TGLSKAG 99 (1160)
Q Consensus 22 FhATQVPq~gwDkLfVSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVS--mGSSKSg 99 (1160)
..|..+|.... .-.=.+|.+..|..+.||. ..-++-++.|..++.=.+ .++ ....+|-|. -..++-.
T Consensus 9 i~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~-vvk~t~nP~WnE~f~f~i---~~~------~~~l~~~V~D~d~~~~dd 77 (145)
T cd04038 9 VRGTNLAVRDF-TSSDPYVVLTLGNQKVKTR-VIKKNLNPVWNEELTLSV---PNP------MAPLKLEVFDKDTFSKDD 77 (145)
T ss_pred EeeECCCCCCC-CCcCcEEEEEECCEEEEee-eEcCCCCCeecccEEEEe---cCC------CCEEEEEEEECCCCCCCC
Confidence 45666664322 1111133344576666654 344556777776543222 233 345677675 2356678
Q ss_pred ccceeecchhhhhhhcCcceeeccccCCCCCceee
Q 001085 100 FVGEASIDFADYAEASKTSTVSLPLKYSRSKAVLH 134 (1160)
Q Consensus 100 iLGEasINlAdYaea~kp~tVSLPLK~cnsGtVLH 134 (1160)
++|.|.|++.+++++.+.. +|..-..||++-
T Consensus 78 ~iG~a~i~l~~l~~~~~~~----~~~~~~~~~~~~ 108 (145)
T cd04038 78 SMGEAEIDLEPLVEAAKLD----HLRDTPGGTQIK 108 (145)
T ss_pred EEEEEEEEHHHhhhhhhhh----ccccCCCCEEEE
Confidence 9999999999999987653 255556687555
No 308
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=43.20 E-value=36 Score=32.74 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=26.6
Q ss_pred ccceeEEEEe--cCCCcccccceeecchhhhhhhcCcceeeccc
Q 001085 83 SERIYNFIVS--TGLSKAGFVGEASIDFADYAEASKTSTVSLPL 124 (1160)
Q Consensus 83 ~EkiYKfVVS--mGSSKSgiLGEasINlAdYaea~kp~tVSLPL 124 (1160)
..+..+|-|- -..++..+||++.|.++++.. ..+.+.=.+|
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~-~~~~~~W~~l 123 (125)
T cd08386 81 QQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDL-TEEQTFWKDL 123 (125)
T ss_pred CCCEEEEEEEeCCCCcCCcEeeEEEEecccccC-CCCcceEEec
Confidence 4455666664 234577899999999998764 4444443444
No 309
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=43.09 E-value=5.1e+02 Score=31.47 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHhHHHHhHHHH
Q 001085 292 DIEIEKLKSELVALARQADLSELELQTLRKQIVKESKRAQDLSREVISLKEEKDLLKL 349 (1160)
Q Consensus 292 e~~iEkLKsE~~sL~Rqad~s~lELQtLRKQi~kEsKrgqdLs~EVs~Lk~ERD~LK~ 349 (1160)
...+..++.|+..+......+..+++.|+-++..+.. -=..+|.+||.....
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~------~~~~~LqEEr~R~er 262 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQ------FILEALQEERYRYER 262 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhHHHHHH
Confidence 3467777888888887777778888888777655442 333456666655443
No 310
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=42.42 E-value=61 Score=35.12 Aligned_cols=52 Identities=31% Similarity=0.445 Sum_probs=38.9
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHhHHHHhHHHHHHHHHH
Q 001085 302 LVALARQADLSELELQTLRKQIVKESKRAQDLSREVISLKEEKDLLKLDCEKLK 355 (1160)
Q Consensus 302 ~~sL~Rqad~s~lELQtLRKQi~kEsKrgqdLs~EVs~Lk~ERD~LK~E~EqLK 355 (1160)
+++....+..++.++..|+++|.+..++ ++..++.+|+.|-|.++.|||-.+
T Consensus 107 L~s~~~ei~~L~~kI~~L~~~in~~~k~--~~n~~i~slk~EL~d~iKe~e~~e 158 (181)
T PF04645_consen 107 LKSIKKEIEILRLKISSLQKEINKNKKK--DLNEEIESLKSELNDLIKEREIRE 158 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhh--hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444456777888889999999887775 456677888888888888888653
No 311
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=42.38 E-value=7.8e+02 Score=30.74 Aligned_cols=248 Identities=13% Similarity=0.059 Sum_probs=0.0
Q ss_pred CchhhhhhHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 001085 550 PETQVESLENELKIKSKDLSDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLA 629 (1160)
Q Consensus 550 le~~iesle~elk~~~~e~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~ 629 (1160)
++.-+|++|.- +-+-++.-....++..+.+-. ++-+..-.-|..-+.+++.++++.-+.+.=....|++..+
T Consensus 195 l~~Rve~le~~-----Sal~~lq~~L~la~~~~~~~~---e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kK 266 (554)
T KOG4677|consen 195 LKGRVESLERF-----SALRSLQDKLQLAEEAVSMHD---ENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKK 266 (554)
T ss_pred HHhhhHHHHHH-----HHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHH---HHHHHHHHHHHHhhhhh
Q 001085 630 TIKELEAYIKNLEEELEKQAQVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAE---RLQEEFRRLSVQMASSF 706 (1160)
Q Consensus 630 ~i~~Le~qv~sl~eel~~Qaq~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e---~LqeE~~~LS~qmsSt~ 706 (1160)
.|-++..++....=.-.++. ..+.+-=.+....-..+-...-.-+-++|.+...+++ .+|.-+-.|-.+|--+=
T Consensus 267 e~de~k~~~~l~~~l~~kee---L~~s~~~e~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~E 343 (554)
T KOG4677|consen 267 EIDEQKLLLDLFRFLDRKEE---LALSHYREHLIIQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIE 343 (554)
T ss_pred HHHHHHHHHHHHHHhhhHHH---HHHHHHHHhhccCCCCcchhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--------------hhhhhHHHHHHHHHHH-----hhhhHHHH
Q 001085 707 DANEKVAMKALAEASELRMQKRHLEEMINKASEEALS--------------LRDDYETKLCQLSNQL-----NVKTDQIE 767 (1160)
Q Consensus 707 eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~--------------~~~~~e~Ki~~L~~qL-----~~~~~~~e 767 (1160)
.-.=.+...+-.+.-.++-+++..-.|.+..+..+.- .+.++-.||.+-.+.| +++.++..
T Consensus 344 Aq~r~l~s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~~r~~~ 423 (554)
T KOG4677|consen 344 AQDRHLESAGQTQIFRKHPRKASILNMPLVLTLFYECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLKLRAWN 423 (554)
T ss_pred HHHHhHHHHhHHHHHHhhhHhhhhhhchHHHHHHHHHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhh
Q 001085 768 QMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKL 808 (1160)
Q Consensus 768 ~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l 808 (1160)
--+.++++.++||-+...++.....++....+.|-+.++.|
T Consensus 424 ~s~~~l~~~~~qLt~tl~qkq~~le~v~~~~~~ln~~lerL 464 (554)
T KOG4677|consen 424 DSVDALFTTKNQLTYTLKQKQIGLERVVEILHKLNAPLERL 464 (554)
T ss_pred hhHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
No 312
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=42.20 E-value=1.3e+02 Score=31.87 Aligned_cols=94 Identities=24% Similarity=0.378 Sum_probs=54.8
Q ss_pred hHHHHHhhhhhchhhHH----HHHHHHHHHHHHHHHHHHhhhhhh-hhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhH
Q 001085 557 LENELKIKSKDLSDSLA----IINELETHIEGLASELKKQSREFS-NFQATIKELESQIEALGNELKEQSKGYSDSLATI 631 (1160)
Q Consensus 557 le~elk~~~~e~sdSl~----~I~~Le~qi~~LE~Ele~Q~~~f~-~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i 631 (1160)
+..+++.+..++...+. .|.+--..+..-.-|+++++..+. +||+.+.+|..|.|++-.+|+....+- -
T Consensus 50 l~eeik~~n~~~~e~l~~~~~kl~et~~~L~k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~~~~~~------~ 123 (155)
T PF07464_consen 50 LQEEIKDANPEAEEALKQLKTKLEETAEKLRKANPEVEKQANELQEKLQSAVQSLVQESQKLAKEVSENSEGA------N 123 (155)
T ss_dssp HHHHHTT-SSTHHHHHHHHHHHHHHHHHGGGG-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS---SS-------
T ss_pred HHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------h
Confidence 34445555555444444 333333333333477888888888 899999999999999999888774321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Q 001085 632 KELEAYIKNLEEELEKQAQVYEADL 656 (1160)
Q Consensus 632 ~~Le~qv~sl~eel~~Qaq~f~~dl 656 (1160)
..|...++.+.....+.++.+..-|
T Consensus 124 e~l~~~~K~~~D~~~k~~~~~~~~l 148 (155)
T PF07464_consen 124 EKLQPAIKQAYDDAVKAAQKVQKQL 148 (155)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2455666666666655555544444
No 313
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=42.14 E-value=36 Score=33.32 Aligned_cols=106 Identities=18% Similarity=0.153 Sum_probs=56.2
Q ss_pred eeeeeccccccccceEEEEeecCCCCcccccccccc-ccCccccCccchhhhhccccCCccccccceeEEEEe-c-CCCc
Q 001085 21 QFHATQVAQLGENALMISVVPLDVGKPTVRLEKAAI-EDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVS-T-GLSK 97 (1160)
Q Consensus 21 qFhATQVPq~gwDkLfVSiVp~DtGKtTaKteKAaV-rnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVS-m-GSSK 97 (1160)
-..|..+|...+....=.+|-+-.|....++....| .+-+..|..+++=.+. .+ ......|-|- - ..++
T Consensus 6 Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~---~~-----~~~~L~~~V~d~d~~~~ 77 (124)
T cd04037 6 VVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEAT---LP-----GNSILKISVMDYDLLGS 77 (124)
T ss_pred EEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEec---CC-----CCCEEEEEEEECCCCCC
Confidence 456777776543332211222222332222211223 3455666554433221 12 1345555554 1 3346
Q ss_pred ccccceeecchhhhhhhcCcceeeccccCCCCCceeeE
Q 001085 98 AGFVGEASIDFADYAEASKTSTVSLPLKYSRSKAVLHV 135 (1160)
Q Consensus 98 SgiLGEasINlAdYaea~kp~tVSLPLK~cnsGtVLHV 135 (1160)
..++|.+.|++++..-.......-+|-..|..| +||+
T Consensus 78 dd~iG~~~i~l~~~~~~~~~~~~~~~~~~~~~~-~~~~ 114 (124)
T cd04037 78 DDLIGETVIDLEDRFFSKHRATCGLPPTYEESG-PNQW 114 (124)
T ss_pred CceeEEEEEeecccccchHHHhccCCCcccccC-ceec
Confidence 789999999999987666666777888888444 4454
No 314
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=42.00 E-value=78 Score=27.53 Aligned_cols=86 Identities=13% Similarity=0.094 Sum_probs=47.0
Q ss_pred eeeeeccccccc---cceEEEEeecCCCCccccccccccccCccccCccchhhhhccccCCccccccceeEEEEecCCC-
Q 001085 21 QFHATQVAQLGE---NALMISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVSTGLS- 96 (1160)
Q Consensus 21 qFhATQVPq~gw---DkLfVSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVSmGSS- 96 (1160)
-+.|..++...+ ...||.+-....|..+++|. ..=.+++..|...+.-.+.. +. ....+|.|....+
T Consensus 6 i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~-~~~~~~~P~w~e~~~~~~~~---~~-----~~~l~i~v~~~~~~ 76 (101)
T smart00239 6 IISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTK-VVKNTLNPVWNETFEFEVPP---PE-----LAELEIEVYDKDRF 76 (101)
T ss_pred EEEeeCCCCCCCCCCCCceEEEEEeCCccceEeee-EecCCCCCcccceEEEEecC---cc-----cCEEEEEEEecCCc
Confidence 345556666543 44555554443331233332 22223367777654433321 11 4556777765444
Q ss_pred -cccccceeecchhhhhhhc
Q 001085 97 -KAGFVGEASIDFADYAEAS 115 (1160)
Q Consensus 97 -KSgiLGEasINlAdYaea~ 115 (1160)
+...+|.+.|.++++....
T Consensus 77 ~~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 77 GRDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred cCCceeEEEEEEHHHcccCc
Confidence 4789999999999887654
No 315
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=41.70 E-value=75 Score=30.96 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=40.4
Q ss_pred ceeEEEEe--cCCCcccccceeecchhhhhhhcCcceeeccccCCC-----CCceeeEeeeeecc
Q 001085 85 RIYNFIVS--TGLSKAGFVGEASIDFADYAEASKTSTVSLPLKYSR-----SKAVLHVSIQRVQE 142 (1160)
Q Consensus 85 kiYKfVVS--mGSSKSgiLGEasINlAdYaea~kp~tVSLPLK~cn-----sGtVLHVtIQ~Lt~ 142 (1160)
+...|.|. -+.++..+||.+.|++.+...... ....+||.... ...-|||.++...+
T Consensus 59 ~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 59 KELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPS-GRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred CEEEEEEEECCCCCCCceEEEEEEeHHHhccCCc-eeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 44567775 244578999999999999886433 35679998552 34567888888655
No 316
>PRK11546 zraP zinc resistance protein; Provisional
Probab=41.64 E-value=1.1e+02 Score=32.28 Aligned_cols=61 Identities=18% Similarity=0.262 Sum_probs=44.8
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhh
Q 001085 739 EEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMM 810 (1160)
Q Consensus 739 ~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~ 810 (1160)
+.++.|.++|-.+...|-.+|-.|..++.. |-....-+.+.+.++..||+.|..++..++.
T Consensus 50 a~~q~I~~~f~~~t~~LRqqL~aKr~ELnA-----------Ll~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 50 AAWQKIHNDFYAQTSALRQQLVSKRYEYNA-----------LLTANPPDSSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888888888666555443 3455677888999999999999998875443
No 317
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=41.62 E-value=1.3e+02 Score=29.10 Aligned_cols=57 Identities=25% Similarity=0.383 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHh
Q 001085 884 AVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEKK 940 (1160)
Q Consensus 884 ~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~ 940 (1160)
.|..||-||+.||.+...|..-.-.--.-++.|..+.-||+.+..-=.+-+.++--|
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466677777777777776665444444456667777777777766555555555444
No 318
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=41.53 E-value=3.4e+02 Score=32.16 Aligned_cols=135 Identities=29% Similarity=0.350 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHH-----------------HHHhhhhhhhHH
Q 001085 792 GALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELL-----------------IQRANRERDELE 854 (1160)
Q Consensus 792 ~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~-----------------~~~~~~e~~~l~ 854 (1160)
+++..++|.|+..|+=-..||..|-.-.-||.- |.+++-.+|.|.|.. ++..+.|+.-|+
T Consensus 3 dd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~---EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLe 79 (351)
T PF07058_consen 3 DDVQNQNQELMKQIEICQEENKILDKMHRQKVL---EVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLE 79 (351)
T ss_pred hhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777776555555555554444443 555665666665543 344445555566
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhhHHHHH---------HHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhh
Q 001085 855 STIALVKKEAESSVEEVQRIQRIEDEKEAA---------VELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKG 925 (1160)
Q Consensus 855 ~~~~~~k~eae~~~~el~~~~~~kdeke~~---------~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~ 925 (1160)
.++|-+|--|-....-+-+ .-||+-+.+ -+.||.|+..||+-.- .+ |.-.|--.|||.
T Consensus 80 RELARaKV~aNRVA~vvAN--EWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLA-----ia------ERtAkaEaQLke 146 (351)
T PF07058_consen 80 RELARAKVSANRVATVVAN--EWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLA-----IA------ERTAKAEAQLKE 146 (351)
T ss_pred HHHHHhhhhhhhhhhhhcc--cccccCCccccHHHHHHHHHHHHHHHHHHHHHHH-----HH------HHHHHHHHHHHH
Confidence 6666665444333222211 356665443 3557777777765322 11 223334455555
Q ss_pred hhhhhHHHHHHHHHhhhhcc
Q 001085 926 DLKKKEDALNSLEKKLKDSN 945 (1160)
Q Consensus 926 ~l~kke~~~~~~ek~~~~s~ 945 (1160)
.|+-+ +..+|..|+..+
T Consensus 147 K~klR---LK~LEe~Lk~~~ 163 (351)
T PF07058_consen 147 KLKLR---LKVLEEGLKGSS 163 (351)
T ss_pred HHHHH---HHHHHhhccCCC
Confidence 55544 334455555443
No 319
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=41.42 E-value=4e+02 Score=27.07 Aligned_cols=28 Identities=21% Similarity=0.177 Sum_probs=13.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 001085 719 EASELRMQKRHLEEMINKASEEALSLRD 746 (1160)
Q Consensus 719 E~seLr~~~~~LEe~L~~a~~el~~~~~ 746 (1160)
++..++.+...|......|...|...+.
T Consensus 67 e~~~~~~~~~~l~~~~~~a~~~l~~~e~ 94 (132)
T PF07926_consen 67 ELQELQQEINELKAEAESAKAELEESEA 94 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555444444333
No 320
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=41.40 E-value=1.4e+02 Score=28.84 Aligned_cols=55 Identities=27% Similarity=0.380 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-------HHHhhhhcchhhhHhHHHHHHH
Q 001085 478 YLLEQKIMDLYSEIEIYRRDKDELETQMEQLALDY-------EILKQENHDISYKLEQSQLQEQ 534 (1160)
Q Consensus 478 ~~L~~KI~eL~~ele~y~~~~~eLe~k~eqL~~dy-------e~LkQEN~dis~KLEqsqlqe~ 534 (1160)
+-|+.||+..-.-|.-.+-+.++|+++..+|.... +.|.+||..+ |=|+..-|++
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qL--k~E~~~Wqer 68 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHL--KEQQNGWQER 68 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHH
Confidence 45667777665555555556666666655554443 3366665544 2344444443
No 321
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=41.38 E-value=5.2e+02 Score=33.80 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHH
Q 001085 853 LESTIALVKKEAESSVEEVQRI 874 (1160)
Q Consensus 853 l~~~~~~~k~eae~~~~el~~~ 874 (1160)
....+..++++|+..+.+|..+
T Consensus 575 a~~~l~~a~~~~~~~i~~lk~~ 596 (782)
T PRK00409 575 AQQAIKEAKKEADEIIKELRQL 596 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566667777777776654
No 322
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=40.83 E-value=7.7e+02 Score=30.26 Aligned_cols=126 Identities=25% Similarity=0.287 Sum_probs=76.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHhhhhh-
Q 001085 676 TLRKTRLKNANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQK-------RHLEEMINKASEEALSLRDD- 747 (1160)
Q Consensus 676 aLrktR~~na~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~-------~~LEe~L~~a~~el~~~~~~- 747 (1160)
+||+ .+-..++-+|+|+.-||.|-+.+|=+|=.++..+.+|---||-=- ++=.|.-+...++|..++-=
T Consensus 414 aLRr---QyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtll 490 (593)
T KOG4807|consen 414 ALRR---QYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLL 490 (593)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4554 444567889999999999999999999999998888877776422 22222223333343332210
Q ss_pred ------------hHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhh---hhhHhhhHHHHHHHHHHHh
Q 001085 748 ------------YETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKK---HDEEDSGALSLEIQQLKAD 804 (1160)
Q Consensus 748 ------------~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~---~~~~~~~~~~~eiq~l~~~ 804 (1160)
...--.+|.--|.+|...|+-+.+|+....++|....+ +--....|+-.|.-+.|+.
T Consensus 491 tgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKak 562 (593)
T KOG4807|consen 491 TGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKAK 562 (593)
T ss_pred ccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHh
Confidence 00012234555666777777777777777777766543 3333445555555555543
No 323
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=40.60 E-value=65 Score=31.03 Aligned_cols=92 Identities=16% Similarity=0.157 Sum_probs=47.7
Q ss_pred eeeeeccccccccc---eEEEEeecCCCCccccccccccccCccccCccchhhhhccccCCccccccceeEEEEec--CC
Q 001085 21 QFHATQVAQLGENA---LMISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVST--GL 95 (1160)
Q Consensus 21 qFhATQVPq~gwDk---LfVSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVSm--GS 95 (1160)
-+.|-.+|...+.. -||.|- .|....||. ..-.+.++.|...+.=.+. ++. .....|.|-- ..
T Consensus 6 vi~a~~L~~~d~~~~~DPyv~v~---~~~~~~kT~-v~~~t~nP~Wne~f~f~~~---~~~-----~~~l~~~v~d~~~~ 73 (123)
T cd04025 6 VLEARDLAPKDRNGTSDPFVRVF---YNGQTLETS-VVKKSCYPRWNEVFEFELM---EGA-----DSPLSVEVWDWDLV 73 (123)
T ss_pred EEEeeCCCCCCCCCCcCceEEEE---ECCEEEece-eecCCCCCccCcEEEEEcC---CCC-----CCEEEEEEEECCCC
Confidence 35566676554432 234332 344444442 2233555666554432222 111 3456666652 23
Q ss_pred CcccccceeecchhhhhhhcCcceeecccc
Q 001085 96 SKAGFVGEASIDFADYAEASKTSTVSLPLK 125 (1160)
Q Consensus 96 SKSgiLGEasINlAdYaea~kp~tVSLPLK 125 (1160)
++..++|.+.|++++..... +...-++|.
T Consensus 74 ~~~~~iG~~~~~l~~l~~~~-~~~~w~~L~ 102 (123)
T cd04025 74 SKNDFLGKVVFSIQTLQQAK-QEEGWFRLL 102 (123)
T ss_pred CCCcEeEEEEEEHHHcccCC-CCCCEEECC
Confidence 45689999999999986532 223334444
No 324
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=40.24 E-value=2.5e+02 Score=32.76 Aligned_cols=74 Identities=24% Similarity=0.340 Sum_probs=54.7
Q ss_pred hhhhhhHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH--HHHHHHHHHHHhhhhhhHHH
Q 001085 552 TQVESLENELKIKSKDLSDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQ--IEALGNELKEQSKGYSDSLA 629 (1160)
Q Consensus 552 ~~iesle~elk~~~~e~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~ee--lq~s~~eLK~q~~e~S~~l~ 629 (1160)
+-|--|++.||.....++|.-+-|.+|++|..||++.|= +|| -...|-+||..+++
T Consensus 68 V~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWI----------------EEECHRVEAQLALKEARkE------ 125 (305)
T PF15290_consen 68 VCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWI----------------EEECHRVEAQLALKEARKE------ 125 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHH------
Confidence 556678889999888899999999999999999997772 233 35666788887764
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 001085 630 TIKELEAYIKNLEEELEKQ 648 (1160)
Q Consensus 630 ~i~~Le~qv~sl~eel~~Q 648 (1160)
|+-|.-=|..|.-.|..+
T Consensus 126 -IkQLkQvieTmrssL~ek 143 (305)
T PF15290_consen 126 -IKQLKQVIETMRSSLAEK 143 (305)
T ss_pred -HHHHHHHHHHHHhhhchh
Confidence 556666666666555444
No 325
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=39.35 E-value=2.4e+02 Score=27.07 Aligned_cols=66 Identities=24% Similarity=0.398 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhhh---hhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 001085 691 LQEEFRRLSVQMAS---SFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKT 763 (1160)
Q Consensus 691 LqeE~~~LS~qmsS---t~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~ 763 (1160)
+..||..++.++.+ --++=|.-+...+.|...+|-..-.||....+. +.+|+..|..|..+|+.+.
T Consensus 9 ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~km-------K~~YEeEI~rLr~eLe~r~ 77 (79)
T PF08581_consen 9 IRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKM-------KQQYEEEIARLRRELEQRG 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhC
Confidence 34455555553322 234445556777888888888888888887776 8899999999988887543
No 326
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=38.93 E-value=8.5e+02 Score=30.19 Aligned_cols=47 Identities=32% Similarity=0.358 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhh-hhhHHHhHH-HHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001085 612 ALGNELKEQSKG-YSDSLATIK-ELEAYIKNLEEELEKQAQVYEADLEV 658 (1160)
Q Consensus 612 ~s~~eLK~q~~e-~S~~l~~i~-~Le~qv~sl~eel~~Qaq~f~~dl~a 658 (1160)
.....|+.|..+ |+..-..+. .|+.++..+.+++..+...+...+..
T Consensus 277 ~l~~~L~~q~~e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~~~~~l~~ 325 (582)
T PF09731_consen 277 ELERALEEQREELLSKLREELEQELEEKRAELEEELREEFEREREELEE 325 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666655 444333333 34544444444444444444444433
No 327
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=38.80 E-value=76 Score=29.87 Aligned_cols=89 Identities=18% Similarity=0.150 Sum_probs=44.7
Q ss_pred EEEeeeeeccccccccc-----eEEEEeecC-CCCccccccccccccCccccCccchhhhhccccCCccccccceeEEEE
Q 001085 18 FKLQFHATQVAQLGENA-----LMISVVPLD-VGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIV 91 (1160)
Q Consensus 18 FKLqFhATQVPq~gwDk-----LfVSiVp~D-tGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVV 91 (1160)
-.+++.|..+|...+.. ..|++.+.+ ......||. ..-.+-+..|. +++=++ .+...+.. .....|-|
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~-vi~~t~nP~Wn-~f~~~~---~~l~~~~~-~~~l~~~V 76 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTE-VIKNTLNPVWK-PFTIPL---QKLCNGDY-DRPIKIEV 76 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeee-EeccCCCCceE-EEEEEH---HHhcCCCc-CCEEEEEE
Confidence 35688999998764432 223333333 222233332 22223344555 322111 11111111 23455555
Q ss_pred e--cCCCcccccceeecchhhhh
Q 001085 92 S--TGLSKAGFVGEASIDFADYA 112 (1160)
Q Consensus 92 S--mGSSKSgiLGEasINlAdYa 112 (1160)
- -..++..++|.+++.+++..
T Consensus 77 ~d~d~~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 77 YDYDSSGKHDLIGEFETTLDELL 99 (110)
T ss_pred EEeCCCCCCcEEEEEEEEHHHHh
Confidence 3 24457799999999999988
No 328
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=38.69 E-value=2.7e+02 Score=35.53 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=17.9
Q ss_pred hHhhhHHHHHHHHHHHhhhhhhhhhhhhhH
Q 001085 788 EEDSGALSLEIQQLKADTEKLMMDNKSLSE 817 (1160)
Q Consensus 788 ~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e 817 (1160)
...+...-.+|..+...++.|..+|..|.-
T Consensus 414 ~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~ 443 (652)
T COG2433 414 RREITVYEKRIKKLEETVERLEEENSELKR 443 (652)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466666666666666666665555444
No 329
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=38.53 E-value=7.8e+02 Score=29.67 Aligned_cols=58 Identities=24% Similarity=0.189 Sum_probs=26.7
Q ss_pred hHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 001085 836 VKEYELLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLK 896 (1160)
Q Consensus 836 ~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~ 896 (1160)
+.|.+.--|..++|.+|--.-.+-|-.|-.-...|=+. .=|-+-+.|+.|.+-|..|-
T Consensus 157 ~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~---ml~kRQ~yI~~LEsKVqDLm 214 (401)
T PF06785_consen 157 CGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHS---MLDKRQAYIGKLESKVQDLM 214 (401)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchh---hhHHHHHHHHHHHHHHHHHH
Confidence 34444444444454444333333333333333333222 33556677777776665543
No 330
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=38.40 E-value=1.2e+02 Score=28.95 Aligned_cols=86 Identities=13% Similarity=0.171 Sum_probs=45.4
Q ss_pred eeeeecccccccc----ceEEEEeecCCCCccccccccccccCccccCccchhhhhccccCCcccc-ccceeEEEEec--
Q 001085 21 QFHATQVAQLGEN----ALMISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKI-SERIYNFIVST-- 93 (1160)
Q Consensus 21 qFhATQVPq~gwD----kLfVSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~-~EkiYKfVVSm-- 93 (1160)
-.+|.++|...+. --||-|.=...|+.+.||. ..-.+-+..|..+++ |.- ..... .....+|.|--
T Consensus 7 v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~-v~~~t~nP~Wne~f~----f~~--~~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 7 IHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTR-IIRKDLNPVWEETWF----VLV--TPDEVKAGERLSCRLWDSD 79 (111)
T ss_pred EEEeeCCCcccCCCCCCCccEEEEEccCCCccEeee-eECCCCCCccceeEE----EEe--CchhccCCCEEEEEEEeCC
Confidence 4567788764332 1233332223466666543 222233445555443 211 11111 23456776652
Q ss_pred CCCcccccceeecchhhhhh
Q 001085 94 GLSKAGFVGEASIDFADYAE 113 (1160)
Q Consensus 94 GSSKSgiLGEasINlAdYae 113 (1160)
..++..+||++.|.+++.+.
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~ 99 (111)
T cd04041 80 RFTADDRLGRVEIDLKELIE 99 (111)
T ss_pred CCCCCCcceEEEEEHHHHhc
Confidence 34567899999999999984
No 331
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=37.57 E-value=1.2e+02 Score=28.23 Aligned_cols=51 Identities=18% Similarity=0.189 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhHh
Q 001085 477 TYLLEQKIMDLYSEIEIYRRDKDELETQMEQLALDYEILKQENHDISYKLE 527 (1160)
Q Consensus 477 ~~~L~~KI~eL~~ele~y~~~~~eLe~k~eqL~~dye~LkQEN~dis~KLE 527 (1160)
+..|.+||+.|-.-.+..+.+|.-|..+..++.-+-..|.+-|.--+.|+|
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvE 52 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVE 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888777767667777777777777776666666666665555555
No 332
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=37.46 E-value=1e+02 Score=32.47 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=46.2
Q ss_pred ccccceeEEEEe-cCC--CcccccceeecchhhhhhhcCcceeeccccC--CCCCceeeEeeeeeccc
Q 001085 81 KISERIYNFIVS-TGL--SKAGFVGEASIDFADYAEASKTSTVSLPLKY--SRSKAVLHVSIQRVQEN 143 (1160)
Q Consensus 81 k~~EkiYKfVVS-mGS--SKSgiLGEasINlAdYaea~kp~tVSLPLK~--cnsGtVLHVtIQ~Lt~k 143 (1160)
.+..+-.+|-|- -|. .+-.++|+|.|+|+.+..... ..-++||.. -..|.=|||.|..-.|-
T Consensus 74 ~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~-~~~~~~L~~~~k~~Gg~l~v~ir~r~p~ 140 (155)
T cd08690 74 VFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCE-IHESVDLMDGRKATGGKLEVKVRLREPL 140 (155)
T ss_pred hccCCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCc-ceEEEEhhhCCCCcCCEEEEEEEecCCC
Confidence 344666778775 443 578999999999999877553 555888773 34899999999886664
No 333
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=37.41 E-value=6.4e+02 Score=28.34 Aligned_cols=25 Identities=12% Similarity=0.343 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Q 001085 749 ETKLCQLSNQLNVKTDQIEQMLKEI 773 (1160)
Q Consensus 749 e~Ki~~L~~qL~~~~~~~e~m~~el 773 (1160)
...++.+.+.+....+.++|.+.+.
T Consensus 12 ~a~~~~~~dk~EDp~~~l~Q~ird~ 36 (225)
T COG1842 12 KANINELLDKAEDPEKMLEQAIRDM 36 (225)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3355555555555555555544333
No 334
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=37.31 E-value=5.8e+02 Score=27.80 Aligned_cols=132 Identities=17% Similarity=0.239 Sum_probs=71.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh-hhhhHHHhH-----HHHHHHHHHH
Q 001085 568 LSDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSK-GYSDSLATI-----KELEAYIKNL 641 (1160)
Q Consensus 568 ~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~-e~S~~l~~i-----~~Le~qv~sl 641 (1160)
++.|++++...-.+|+.+=.+.-+|-++| +-.+.++|++....++++.. =|.+-++.+ +++...|..+
T Consensus 17 ~~~sls~~~~~~kqve~~~l~~lkqqqd~------itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~ 90 (165)
T PF09602_consen 17 WSQSLSLFASFMKQVEQQTLKKLKQQQDW------ITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEW 90 (165)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888888887776666666666 45555555555555554421 122223333 3344444444
Q ss_pred H---HHHHHHHHHHHhhH-----HHHHHhhHHHHHHHHHHHH--HHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 001085 642 E---EELEKQAQVYEADL-----EVVTRAKVEQEQRAIQAEE--TLRKTRLKNANTAERLQEEFRRLSVQMASSFD 707 (1160)
Q Consensus 642 ~---eel~~Qaq~f~~dl-----~a~~~~k~eqE~rai~aEe--aLrktR~~na~~~e~LqeE~~~LS~qmsSt~e 707 (1160)
. +|+..+.+.+.-+. +.+++.+...++-...+=+ .++|.-|.+++ +-.-+.++..-..++-+|+
T Consensus 91 t~k~~El~~~i~el~~~~~Ks~~~~l~q~~~~~eEtv~~~ieqqk~~r~e~qk~~--~~yv~~~k~~q~~~~~~fe 164 (165)
T PF09602_consen 91 TDKLNELSAKIQELLLSPSKSSFSLLSQISKQYEETVKQLIEQQKLTREEWQKVL--DAYVEQAKSSQKELAKKFE 164 (165)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence 3 34444444443332 6677777777776665433 34444444443 3344555555555555554
No 335
>PF13514 AAA_27: AAA domain
Probab=37.09 E-value=1.2e+03 Score=31.48 Aligned_cols=52 Identities=27% Similarity=0.367 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhhhhhh---HHHHHHHHHHHHHhhhhhhHHHHHHHhHHHHh
Q 001085 294 EIEKLKSELVALARQADLSE---LELQTLRKQIVKESKRAQDLSREVISLKEEKD 345 (1160)
Q Consensus 294 ~iEkLKsE~~sL~Rqad~s~---lELQtLRKQi~kEsKrgqdLs~EVs~Lk~ERD 345 (1160)
.|..+..++..+++..+... -+-+.+++++..-..+-++|..++..++.+++
T Consensus 151 ~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~ 205 (1111)
T PF13514_consen 151 EINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELR 205 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554433332 23344444444433333444444444443333
No 336
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=37.02 E-value=5.3e+02 Score=33.69 Aligned_cols=20 Identities=30% Similarity=0.508 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhhHHHHHH
Q 001085 854 ESTIALVKKEAESSVEEVQR 873 (1160)
Q Consensus 854 ~~~~~~~k~eae~~~~el~~ 873 (1160)
...+..++++++..+.+|..
T Consensus 571 ~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 571 QEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444555666665555543
No 337
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=36.07 E-value=1.6e+02 Score=28.05 Aligned_cols=58 Identities=14% Similarity=0.217 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHH---HHHHHHHHhh-----hhHHHHHHHHHHHHHhHHHHHhhhh
Q 001085 729 HLEEMINKASEEALSLRDDYETK---LCQLSNQLNV-----KTDQIEQMLKEINNLSNQLEEQKKH 786 (1160)
Q Consensus 729 ~LEe~L~~a~~el~~~~~~~e~K---i~~L~~qL~~-----~~~~~e~m~~el~~~s~ql~~~~~~ 786 (1160)
.|.+-|.....|+.+|+.+|..- ++.+....+. ....++.++..++.|.+|+..+.+|
T Consensus 14 ~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L~dv 79 (79)
T PF06657_consen 14 ALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKLYDV 79 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45666777777777777766633 3333222221 3456777888888888888776653
No 338
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=35.39 E-value=5.7e+02 Score=27.16 Aligned_cols=20 Identities=25% Similarity=0.134 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHHHHhHH
Q 001085 709 NEKVAMKALAEASELRMQKR 728 (1160)
Q Consensus 709 nE~~~~~A~~E~seLr~~~~ 728 (1160)
-|+....--+..++||.+..
T Consensus 49 ~e~~~~~~~a~~~eLr~el~ 68 (177)
T PF07798_consen 49 LENQEYLFKAAIAELRSELQ 68 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555555443
No 339
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=35.18 E-value=3.7e+02 Score=28.40 Aligned_cols=60 Identities=22% Similarity=0.323 Sum_probs=36.7
Q ss_pred hhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 001085 622 KGYSDSLATIKELEAYIKNLEEELEKQAQVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAE 689 (1160)
Q Consensus 622 ~e~S~~l~~i~~Le~qv~sl~eel~~Qaq~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e 689 (1160)
..|.....-+.+|..+|..|+.+.......+..++..+.- -...+.||..+-..|.-+|-
T Consensus 44 ~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~--------~~ai~~al~~akakn~~av~ 103 (155)
T PF06810_consen 44 KDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKK--------DSAIKSALKGAKAKNPKAVK 103 (155)
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHcCCCCHHHHH
Confidence 3344445667788888888888888777777777744332 22233366665555544443
No 340
>PRK11820 hypothetical protein; Provisional
Probab=35.15 E-value=7.8e+02 Score=28.62 Aligned_cols=18 Identities=39% Similarity=0.617 Sum_probs=11.5
Q ss_pred HHHHHHHHhhhhhhhHHH
Q 001085 838 EYELLIQRANRERDELES 855 (1160)
Q Consensus 838 ~~~~~~~~~~~e~~~l~~ 855 (1160)
..+-++|.-++|.|-+-+
T Consensus 242 kLDFL~QEm~RE~NTigS 259 (288)
T PRK11820 242 KLDFLMQELNREANTLGS 259 (288)
T ss_pred chhHHHHHHhHHHHHHHH
Confidence 456677777777774433
No 341
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=34.91 E-value=3.4e+02 Score=31.77 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHh
Q 001085 709 NEKVAMKALAEASELRMQK-----RHLEEMINKASEEALS 743 (1160)
Q Consensus 709 nE~~~~~A~~E~seLr~~~-----~~LEe~L~~a~~el~~ 743 (1160)
.|+-..+--.|+.+||.|. .=+||.-|.|.++|.+
T Consensus 80 s~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLAL 119 (305)
T PF15290_consen 80 SENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLAL 119 (305)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445777776665 4567888888777776
No 342
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=34.51 E-value=2.4e+02 Score=29.64 Aligned_cols=66 Identities=27% Similarity=0.261 Sum_probs=47.3
Q ss_pred hhcccchHHHHHHHHHHHHHHH-------------hhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHhHHHHhHHHHHHH
Q 001085 286 RSQQASDIEIEKLKSELVALAR-------------QADLSELELQTLRKQIVKESKRAQDLSREVISLKEEKDLLKLDCE 352 (1160)
Q Consensus 286 rl~eAse~~iEkLKsE~~sL~R-------------qad~s~lELQtLRKQi~kEsKrgqdLs~EVs~Lk~ERD~LK~E~E 352 (1160)
.|.+-+-++|-.||.-=..|.. |.+.++.+--.|..|+ ..|..|++.++-|+|+||.-|+
T Consensus 40 ~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv-------~~L~~e~s~~~~E~da~k~k~e 112 (135)
T KOG4196|consen 40 HLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQV-------EKLKEENSRLRRELDAYKSKYE 112 (135)
T ss_pred HhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666788888888877772 3333333333444444 3588999999999999999999
Q ss_pred HHHhhh
Q 001085 353 KLKTFQ 358 (1160)
Q Consensus 353 qLKs~~ 358 (1160)
.|-.|-
T Consensus 113 ~l~~~~ 118 (135)
T KOG4196|consen 113 ALQNSA 118 (135)
T ss_pred HHHhhh
Confidence 998864
No 343
>PLN02939 transferase, transferring glycosyl groups
Probab=34.48 E-value=1.4e+03 Score=31.23 Aligned_cols=116 Identities=22% Similarity=0.236 Sum_probs=60.8
Q ss_pred HhHHHHHHHHHHHHHHHH--HHHHH-HHhhHHHHHHhhHHHHHHHHHHHHHHHHH--Hhhh----hhHHHHHHHHHHHHH
Q 001085 629 ATIKELEAYIKNLEEELE--KQAQV-YEADLEVVTRAKVEQEQRAIQAEETLRKT--RLKN----ANTAERLQEEFRRLS 699 (1160)
Q Consensus 629 ~~i~~Le~qv~sl~eel~--~Qaq~-f~~dl~a~~~~k~eqE~rai~aEeaLrkt--R~~n----a~~~e~LqeE~~~LS 699 (1160)
..+++|-.-|.+.++++- .||.- -.+|++.+..+|..-..+.+-.|--|-.| |.+. ..-++.|.+.+..|.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (977)
T PLN02939 128 FQLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLR 207 (977)
T ss_pred ccHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHh
Confidence 344455555555555432 23321 23566777777666666655554444442 2222 223446777777777
Q ss_pred HHhhhhhhhhhHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 001085 700 VQMASSFDANEKVAMK-ALAEASELRMQKRHLEEMINKASEEALSLR 745 (1160)
Q Consensus 700 ~qmsSt~eenE~~~~~-A~~E~seLr~~~~~LEe~L~~a~~el~~~~ 745 (1160)
..|+.+-.. |....- -..|.+-||..|..|-+-++--..+|-...
T Consensus 208 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (977)
T PLN02939 208 NELLIRGAT-EGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVA 253 (977)
T ss_pred hhhhccccc-cccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 666544322 111111 234677777777777766666666665543
No 344
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=34.15 E-value=71 Score=30.52 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=28.9
Q ss_pred cccceeEEEEec--CCCcccccceeecchhhhhhhcCcceeecccc
Q 001085 82 ISERIYNFIVST--GLSKAGFVGEASIDFADYAEASKTSTVSLPLK 125 (1160)
Q Consensus 82 ~~EkiYKfVVSm--GSSKSgiLGEasINlAdYaea~kp~tVSLPLK 125 (1160)
...+..+|.|-. +.++..++|+|.|.|++... .....+-+||.
T Consensus 78 l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~-~~~~~~w~~L~ 122 (123)
T cd08390 78 LQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDL-VKGGVVWRDLE 122 (123)
T ss_pred hcccEEEEEEEECCcCCCCcEEEEEEEeccceec-CCCceEEEeCC
Confidence 344566666663 44577999999999998766 33445666664
No 345
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=33.86 E-value=87 Score=30.46 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=36.6
Q ss_pred ceeEEEEec--CCCcccccceeecchhhhhhhcCcceeeccccCCC-----CCceeeEee
Q 001085 85 RIYNFIVST--GLSKAGFVGEASIDFADYAEASKTSTVSLPLKYSR-----SKAVLHVSI 137 (1160)
Q Consensus 85 kiYKfVVSm--GSSKSgiLGEasINlAdYaea~kp~tVSLPLK~cn-----sGtVLHVtI 137 (1160)
++..|.|-- ..++..++|.+.|.++.......+...-+||+.-. +|.| ||.+
T Consensus 61 ~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i-~l~~ 119 (121)
T cd04054 61 HTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEI-HLEL 119 (121)
T ss_pred CEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEE-EEEE
Confidence 567777753 23567899999999888875444566788887633 6777 6543
No 346
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.80 E-value=6.8e+02 Score=30.16 Aligned_cols=61 Identities=23% Similarity=0.343 Sum_probs=39.2
Q ss_pred hhcccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHhHHHHhHHHHHHHH
Q 001085 286 RSQQASDIEIEKLKSELVALARQADLSELELQTLRKQIVKESKRAQDLSREVISLKEEKDLLKLDCEK 353 (1160)
Q Consensus 286 rl~eAse~~iEkLKsE~~sL~Rqad~s~lELQtLRKQi~kEsKrgqdLs~EVs~Lk~ERD~LK~E~Eq 353 (1160)
.+..+.+..++.+-+|..+|.|..+.+.-..+.|+-.. +.|+.++.++..=+|-|+.-.+.
T Consensus 218 klR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~-------etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 218 KLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMK-------ETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHH-------HHHHHHHHHHHhhhHHHHHHHHH
Confidence 34445677899999999999998887776666554332 34555555555555555554444
No 347
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=33.71 E-value=5.4e+02 Score=26.33 Aligned_cols=39 Identities=13% Similarity=0.305 Sum_probs=20.0
Q ss_pred HHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHh
Q 001085 828 ELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAES 866 (1160)
Q Consensus 828 ~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~ 866 (1160)
.|..+..+++-+.++......+++.|......|+.+...
T Consensus 17 ~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s 55 (107)
T PF09304_consen 17 RLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNAS 55 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333333333333333333466677777776666655443
No 348
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=33.70 E-value=3.8e+02 Score=25.81 Aligned_cols=31 Identities=32% Similarity=0.578 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHhhh
Q 001085 912 EKEKLRKQAFQLKGDLKKKEDALNSLEKKLK 942 (1160)
Q Consensus 912 eke~l~kqv~~lk~~l~kke~~~~~~ek~~~ 942 (1160)
+.+.|..++..++.+++..+..+..++..+.
T Consensus 68 ~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 68 DAEELKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566666655555555555543
No 349
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=33.54 E-value=3.8e+02 Score=24.56 Aligned_cols=91 Identities=22% Similarity=0.325 Sum_probs=48.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHH
Q 001085 717 LAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSL 796 (1160)
Q Consensus 717 ~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~ 796 (1160)
+.+|.+++.....+...+.....--..+-.-.-.- .++..+|+..+..|-++...+....+.+..... ..+....-+.
T Consensus 6 ~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d-~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~-~~~~~~~~~~ 83 (103)
T PF00804_consen 6 FDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQD-SELKRELDELTDEIKQLFQKIKKRLKQLSKDNE-DSEGEEPSSN 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCTT--SH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcccCCCcH
Confidence 34666777776666666665533322210000000 456677777777777777777777777766643 3333344444
Q ss_pred HHHHHHHhhhhhh
Q 001085 797 EIQQLKADTEKLM 809 (1160)
Q Consensus 797 eiq~l~~~~~~l~ 809 (1160)
+..+++.....|+
T Consensus 84 ~~ri~~nq~~~L~ 96 (103)
T PF00804_consen 84 EVRIRKNQVQALS 96 (103)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544444
No 350
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=33.07 E-value=1.2e+03 Score=30.35 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=11.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q 001085 719 EASELRMQKRHLEEMINKASEEAL 742 (1160)
Q Consensus 719 E~seLr~~~~~LEe~L~~a~~el~ 742 (1160)
|+..++.+...|...+.+++..++
T Consensus 640 EL~~~~~~l~~l~~si~~lk~k~~ 663 (717)
T PF10168_consen 640 ELERMKDQLQDLKASIEQLKKKLD 663 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555544443
No 351
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=32.99 E-value=1.1e+03 Score=29.51 Aligned_cols=127 Identities=21% Similarity=0.244 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHH-HHHHHHH-------hHHHHHHHHHHHHHHHHhhhhhhH------HHHHHH
Q 001085 690 RLQEEFRRLSVQMASSFDANEKVAMKALA-EASELRM-------QKRHLEEMINKASEEALSLRDDYE------TKLCQL 755 (1160)
Q Consensus 690 ~LqeE~~~LS~qmsSt~eenE~~~~~A~~-E~seLr~-------~~~~LEe~L~~a~~el~~~~~~~e------~Ki~~L 755 (1160)
+-++|+--.-...++.--+|..+..+++. |+.+||. +-.+|.+-.|.....|..++.+-. +.+.+.
T Consensus 282 rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~ 361 (502)
T KOG0982|consen 282 RRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDI 361 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445566666677777766654 4555554 445677777777777766554322 122222
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhh----hHHHHHHHHHHHhhhhhhhhhhhhhHHH
Q 001085 756 SNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDS----GALSLEIQQLKADTEKLMMDNKSLSEEA 819 (1160)
Q Consensus 756 ~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~----~~~~~eiq~l~~~~~~l~~e~~~l~e~~ 819 (1160)
.-+..--..+++.+ +++..++|+.++++.-.+- +--+.-.-.|..+.++|+.+|-.|++|.
T Consensus 362 Lrrfq~ekeatqEL---ieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~eqn 426 (502)
T KOG0982|consen 362 LRRFQEEKEATQEL---IEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPNRILSEQN 426 (502)
T ss_pred HHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccccchhhhhh
Confidence 22222222222222 3455667777776665554 2223344457777777887777777764
No 352
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=32.84 E-value=1.1e+03 Score=29.57 Aligned_cols=28 Identities=11% Similarity=0.328 Sum_probs=11.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhHHHHHh
Q 001085 756 SNQLNVKTDQIEQMLKEINNLSNQLEEQ 783 (1160)
Q Consensus 756 ~~qL~~~~~~~e~m~~el~~~s~ql~~~ 783 (1160)
..+|+.+...++.-..+|+.+.++|...
T Consensus 89 ee~Lekr~e~Lekre~~Le~ke~~L~~r 116 (514)
T TIGR03319 89 EETLDRKMESLDKKEENLEKKEKELSNK 116 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444333
No 353
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=32.59 E-value=2e+02 Score=29.44 Aligned_cols=99 Identities=17% Similarity=0.170 Sum_probs=53.5
Q ss_pred EEEEE-eeeeeccccccc----cc-eEEEEeecCCC--------CccccccccccccCcccc-CccchhhhhccccCCcc
Q 001085 16 AVFKL-QFHATQVAQLGE----NA-LMISVVPLDVG--------KPTVRLEKAAIEDGCCRW-LNSVYETVKFVREPKSG 80 (1160)
Q Consensus 16 vvFKL-qFhATQVPq~gw----Dk-LfVSiVp~DtG--------KtTaKteKAaVrnG~C~W-~dpIyETvkl~qD~kTk 80 (1160)
.||-+ .+.|..+|. +| |- ..|++.|.+.- .... .++..-.+-+..| ...+.=.+ +
T Consensus 1 ~~~~~~~~~A~~L~~-~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~-kT~v~~~tlnP~W~nE~f~f~v-----~--- 70 (137)
T cd08691 1 LSFSLSGLQARNLKK-GMFFNPDPYVKISIQPGKRHIFPALPHHGQEC-RTSIVENTINPVWHREQFVFVG-----L--- 70 (137)
T ss_pred CEEEEEEEEeCCCCC-ccCCCCCceEEEEEECCCccccccccccccee-eeeeEcCCCCCceEceEEEEEc-----C---
Confidence 37888 889998884 44 22 44555554432 1122 2222233335556 33322222 1
Q ss_pred ccccceeEEEEecC--CCc---ccccceeecchhhhhhhc--CcceeeccccC
Q 001085 81 KISERIYNFIVSTG--LSK---AGFVGEASIDFADYAEAS--KTSTVSLPLKY 126 (1160)
Q Consensus 81 k~~EkiYKfVVSmG--SSK---SgiLGEasINlAdYaea~--kp~tVSLPLK~ 126 (1160)
...+..|-|.-- .++ ..+||.+.|++++++.-. ....++.||.+
T Consensus 71 --~~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k 121 (137)
T cd08691 71 --PTDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGR 121 (137)
T ss_pred --CCCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCc
Confidence 123566666532 233 379999999999998653 23555667654
No 354
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=32.54 E-value=6.7e+02 Score=32.78 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHhHHHHhHHHH
Q 001085 294 EIEKLKSELVALARQADLSELELQTLRKQIVKESKRAQDLSREVISLKEEKDLLKL 349 (1160)
Q Consensus 294 ~iEkLKsE~~sL~Rqad~s~lELQtLRKQi~kEsKrgqdLs~EVs~Lk~ERD~LK~ 349 (1160)
.+-+|..++..|..... .+...+-+.++.......+.-.++...-.+-|.+..
T Consensus 223 ~~~~ln~~l~~l~~~~~---~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a 275 (771)
T TIGR01069 223 AIVKLNNKLAQLKNEEE---CEIEKILRTLSEKVQEYLLELKFLFKEFDFLDSLQA 275 (771)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777766665443 344555566666666666666666666666665543
No 355
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=32.45 E-value=1.5e+03 Score=31.23 Aligned_cols=202 Identities=21% Similarity=0.263 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHh
Q 001085 704 SSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQ 783 (1160)
Q Consensus 704 St~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~ 783 (1160)
|.|..-|-...++--.+-..--.|+..=+.|-+| ++ ++..+.|---++.|+.-.-+-+..
T Consensus 1003 SaFNs~EA~~AK~QMDaIKqmIekKv~L~~L~qC-------qd-------------ALeKqnIa~AL~ALn~IPSdKEms 1062 (1439)
T PF12252_consen 1003 SAFNSEEARQAKAQMDAIKQMIEKKVVLQALTQC-------QD-------------ALEKQNIAGALQALNNIPSDKEMS 1062 (1439)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH-------------HHHhhhHHHHHHHHhcCCchhhhh
Q ss_pred hhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 001085 784 KKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKE 863 (1160)
Q Consensus 784 ~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~e 863 (1160)
+ ....|..+||..+.+++-|..-...=--.-+.|.. .-+++||..-++.+.+|+..--.--..
T Consensus 1063 ~-----Is~eLReQIq~~KQ~LesLQRAV~TPVvtd~eKvr------------~rYe~LI~~iTKrIt~LEk~k~~~l~~ 1125 (1439)
T PF12252_consen 1063 K-----ISSELREQIQSVKQDLESLQRAVVTPVVTDAEKVR------------VRYETLITDITKRITDLEKAKLDNLDS 1125 (1439)
T ss_pred h-----hhHHHHHHHHHHHHHHHHHHHhhcccccccHHHHH------------HHHHHHHHHHHHHHHHHhccccccHHH
Q ss_pred HHhhHHHHHHHhh----hhhHHHHHHHHHH----HHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 001085 864 AESSVEEVQRIQR----IEDEKEAAVELLK----SELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALN 935 (1160)
Q Consensus 864 ae~~~~el~~~~~----~kdeke~~~~~l~----se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~ 935 (1160)
.++.+.-|++|+. |.+||-.|-.--. |+|+.|..|...+...|. .+=-...-|||.-|..++=|.--.+-
T Consensus 1126 ikK~ia~lnnlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL~--dAyl~eitKqIsaLe~e~PKnltdvK 1203 (1439)
T PF12252_consen 1126 IKKAIANLNNLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIHTKLY--DAYLVEITKQISALEKEKPKNLTDVK 1203 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHhhCCCchhhHH
Q ss_pred HHHHhhhhc
Q 001085 936 SLEKKLKDS 944 (1160)
Q Consensus 936 ~~ek~~~~s 944 (1160)
++..++.+.
T Consensus 1204 ~missf~d~ 1212 (1439)
T PF12252_consen 1204 SMISSFNDR 1212 (1439)
T ss_pred HHHHHHHhh
No 356
>COG5283 Phage-related tail protein [Function unknown]
Probab=32.31 E-value=1.6e+03 Score=31.30 Aligned_cols=106 Identities=21% Similarity=0.245 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHH----
Q 001085 601 ATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQAQVYEADLEVVTRAKVEQEQRAIQAEET---- 676 (1160)
Q Consensus 601 st~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~~Qaq~f~~dl~a~~~~k~eqE~rai~aEea---- 676 (1160)
..+.-++.=.+.....+.+-...|..+-..+..|..++-.-.+.+++|-.+---=-++++.--.++.+|.+++.-+
T Consensus 134 ~~is~t~k~maaQ~~l~eqt~n~~g~a~~~~~gl~esf~~q~~aln~q~~~t~k~~~~~~~~l~e~qq~~~q~~~a~~~~ 213 (1213)
T COG5283 134 YAISTLNKSMAAQARLLEQTGNKFGTADAKVVGLRESFGRQTEALNKQLERTKKVADALTYVLDEAQQKLSQALSARLER 213 (1213)
T ss_pred HHHHhhhhhhHHHHHHHHHhhhHHHHHHHhhhhHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3343343333333444444466677777777777777777777777776443211233334445677777777777
Q ss_pred HHHHHhhhhhHHHHHH----------HHHHHHHHHhhhhh
Q 001085 677 LRKTRLKNANTAERLQ----------EEFRRLSVQMASSF 706 (1160)
Q Consensus 677 LrktR~~na~~~e~Lq----------eE~~~LS~qmsSt~ 706 (1160)
|..+|..-..+...|= -.++.++.-.+++|
T Consensus 214 L~~s~~q~~~s~~qlsk~~e~~~~~aG~~~~~~a~~~~s~ 253 (1213)
T COG5283 214 LQESRTQMSQSSGQLGKRLETDKAGAGALGLLGAALAGSF 253 (1213)
T ss_pred HHHHHHHHHHhhhhhccccccchhhhhhHHHHHHhhhcch
Confidence 6666666666666555 55667777777777
No 357
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=32.26 E-value=1e+03 Score=29.25 Aligned_cols=164 Identities=17% Similarity=0.204 Sum_probs=82.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHH----H
Q 001085 706 FDANEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQL----E 781 (1160)
Q Consensus 706 ~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql----~ 781 (1160)
|-.|+++ ++.+.+++.+|.|.+.+...|..|.++.+.+..+.+.--.+|.. -....+..-.++..+-..+ .
T Consensus 63 f~~~~~l-r~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~----~r~e~~~v~~~~~~a~~n~~kAqQ 137 (499)
T COG4372 63 FLLNRNL-RSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQK----ARQEREAVRQELAAARQNLAKAQQ 137 (499)
T ss_pred HHhhhhH-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554 56788999999999999999999999998877765543333322 1122222222222111111 1
Q ss_pred Hhh------hhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHH
Q 001085 782 EQK------KHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELES 855 (1160)
Q Consensus 782 ~~~------~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~ 855 (1160)
.+. ..--....-++.+.+.|.++...|-.+...|---++|-..-+.+|-.--+-|+.-+--+++...-...+..
T Consensus 138 ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ 217 (499)
T COG4372 138 ELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTE 217 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11111224455555555555555555555544323332222223322222244444445555555555555
Q ss_pred HHHHHHHHHHhhHHHHHHH
Q 001085 856 TIALVKKEAESSVEEVQRI 874 (1160)
Q Consensus 856 ~~~~~k~eae~~~~el~~~ 874 (1160)
+++..-..+.....+++..
T Consensus 218 ela~r~aa~Qq~~q~i~qr 236 (499)
T COG4372 218 ELARRAAAAQQTAQAIQQR 236 (499)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555443
No 358
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=32.17 E-value=1e+02 Score=34.45 Aligned_cols=93 Identities=23% Similarity=0.213 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHhHHHHhHHHHHHHHHHhhhhhhhHHHHhccccccCCC
Q 001085 297 KLKSELVALARQADLSELELQTLRKQIVKESKRAQDLSREVISLKEEKDLLKLDCEKLKTFQKRMDEAKVRNKLHFQGGD 376 (1160)
Q Consensus 297 kLKsE~~sL~Rqad~s~lELQtLRKQi~kEsKrgqdLs~EVs~Lk~ERD~LK~E~EqLKs~~k~~~ea~~~~rl~~e~~D 376 (1160)
.+=.++..|+.+ +..+-+.+.|+++..+.++ |..|..+++++-..|++|.+....-.+.... +...
T Consensus 118 ~ll~~l~~l~~~-~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~---------~~~a 183 (216)
T KOG1962|consen 118 TLLRELATLRAN-EKAMKENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQK---------KVDA 183 (216)
T ss_pred HHHHHHHHHHhh-HHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHH---------HHHH
Confidence 333445555544 5566677788888887777 8888888888888888888877665553111 1112
Q ss_pred chHHHHHHHHHhhhhhhhhhhHHHHHH
Q 001085 377 PWVLLEEIRQELSYEKDLNANLRLQLQ 403 (1160)
Q Consensus 377 ~~~~leELk~EL~~EKelNaNL~LQLq 403 (1160)
..-+.+++.+|.+=-.+-+.+|+-|++
T Consensus 184 l~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 184 LKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 345667777777777777777776654
No 359
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=32.07 E-value=68 Score=31.47 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=30.6
Q ss_pred CccchhhhhccccCCccccccceeEEEEe--cCCCcccccceeecchhhhhh
Q 001085 64 LNSVYETVKFVREPKSGKISERIYNFIVS--TGLSKAGFVGEASIDFADYAE 113 (1160)
Q Consensus 64 ~dpIyETvkl~qD~kTkk~~EkiYKfVVS--mGSSKSgiLGEasINlAdYae 113 (1160)
.+|+|--+=-..-......+....+|.|- -..++..+||++.|+|+++..
T Consensus 60 ~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~ 111 (122)
T cd08381 60 RNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDL 111 (122)
T ss_pred CCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEecccccc
Confidence 56666443211111122345566777665 244578999999999999774
No 360
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=31.89 E-value=3e+02 Score=32.10 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=60.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHH
Q 001085 568 LSDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLE 642 (1160)
Q Consensus 568 ~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~ 642 (1160)
+.+--+--.+|..+|++-.-|+|.-..+|..+|+.-=-.+.|+..-+.+|+++-..|..-+--+.-|+.|+....
T Consensus 128 Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~qldd~~ 202 (338)
T KOG3647|consen 128 LNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFHNLDYLKSQLDDRT 202 (338)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 444555667899999999999999999999999999999999999999999998888777766666666654443
No 361
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=31.77 E-value=7.8e+02 Score=27.65 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001085 604 KELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQAQVYEAD 655 (1160)
Q Consensus 604 e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~~Qaq~f~~d 655 (1160)
+.-.+.+-.+..+|+...+..-++...++.|++....+++.+..+...+.+-
T Consensus 21 e~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEA 72 (205)
T KOG1003|consen 21 DRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEA 72 (205)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3334556666667777777777777777777777777777777666555443
No 362
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=31.63 E-value=6.9e+02 Score=26.99 Aligned_cols=89 Identities=19% Similarity=0.273 Sum_probs=52.5
Q ss_pred HHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhh
Q 001085 769 MLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANR 848 (1160)
Q Consensus 769 m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~ 848 (1160)
++-.++...++|..+...-+...+-..+++-+++..|.....+...|..--.+|+. |+ +++-......+.
T Consensus 57 ~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEk---Ey-------kealea~nEknk 126 (159)
T PF04949_consen 57 QLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEK---EY-------KEALEAFNEKNK 126 (159)
T ss_pred HHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HH-------HHHHHHHHHHHH
Confidence 44444445555555555555566778888888988888888887777765555554 21 222222334455
Q ss_pred hhhhHHHHHHHHHHHHHhh
Q 001085 849 ERDELESTIALVKKEAESS 867 (1160)
Q Consensus 849 e~~~l~~~~~~~k~eae~~ 867 (1160)
+.+-|+.++-.|--+.|..
T Consensus 127 eK~~Lv~~L~eLv~eSE~~ 145 (159)
T PF04949_consen 127 EKAQLVTRLMELVSESERL 145 (159)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666666665555555543
No 363
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=31.50 E-value=80 Score=32.46 Aligned_cols=38 Identities=39% Similarity=0.586 Sum_probs=32.3
Q ss_pred HHHhHHHHHHHhhhhhhhHHHHHhhcchhhHHHhhhhhhHHHHHHHHHH
Q 001085 972 EIANLRERIKLLEGQIKSKEIALEASTNSFVEKEKDLKNKIEELECRVE 1020 (1160)
Q Consensus 972 ~~a~l~~~ik~~e~~ik~~~~a~~~s~~~~~~ke~~l~~~i~e~~~~~~ 1020 (1160)
|-|.|+-||-.|||+.+.-+..- +||..+|.-||-.|.
T Consensus 26 ERaEmkarIa~LEGE~r~~e~l~-----------~dL~rrIkMLE~aLk 63 (134)
T PF08232_consen 26 ERAEMKARIAFLEGERRGQENLK-----------KDLKRRIKMLEYALK 63 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 56889999999999999876554 589999999998776
No 364
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=31.16 E-value=75 Score=37.38 Aligned_cols=89 Identities=15% Similarity=0.237 Sum_probs=22.3
Q ss_pred HhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhh
Q 001085 831 QMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDE 910 (1160)
Q Consensus 831 ~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e 910 (1160)
.|...+......+...+.+++.|..+|+.+..-.-..-..+..|...=..-+..|..||+.+..+..-..|||-+.+..-
T Consensus 60 dLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~a 139 (326)
T PF04582_consen 60 DLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQA 139 (326)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhc
Confidence 33444455555666677777888888888877777777777778887788888899999999999999999998887655
Q ss_pred HHHHHHHHH
Q 001085 911 SEKEKLRKQ 919 (1160)
Q Consensus 911 ~eke~l~kq 919 (1160)
+-.-.|.+.
T Consensus 140 L~ItdLe~R 148 (326)
T PF04582_consen 140 LNITDLESR 148 (326)
T ss_dssp HHHHHHHHH
T ss_pred chHhhHHHH
Confidence 443333333
No 365
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.15 E-value=3.5e+02 Score=32.38 Aligned_cols=76 Identities=20% Similarity=0.212 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 001085 610 IEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQAQVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAE 689 (1160)
Q Consensus 610 lq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~~Qaq~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e 689 (1160)
+++.++.||+.+.+ |+.-..++.-+.+.|+.|.+.+..++|.+++-..| ||-|+.--.++.+.
T Consensus 230 ~~aeq~slkRt~Ee-------L~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e----------al~~~~n~~~~~~D 292 (365)
T KOG2391|consen 230 LQAEQESLKRTEEE-------LNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE----------ALEKAENLEALDID 292 (365)
T ss_pred HHHHHHHHHhhHHH-------HHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----------HHhhhccCcCCCch
Confidence 36777777776553 34445566667777888888888888888765544 34444333333333
Q ss_pred HHHHHHHHHHHHh
Q 001085 690 RLQEEFRRLSVQM 702 (1160)
Q Consensus 690 ~LqeE~~~LS~qm 702 (1160)
.--..-.-|+.||
T Consensus 293 ~~~~~~~~l~kq~ 305 (365)
T KOG2391|consen 293 EAIECTAPLYKQI 305 (365)
T ss_pred hhhhccchHHHHH
Confidence 4344445566777
No 366
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=30.91 E-value=3.8e+02 Score=25.40 Aligned_cols=12 Identities=33% Similarity=0.529 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q 001085 575 INELETHIEGLA 586 (1160)
Q Consensus 575 I~~Le~qi~~LE 586 (1160)
+++.+.+|.+|.
T Consensus 2 lrEqe~~i~~L~ 13 (75)
T PF07989_consen 2 LREQEEQIDKLK 13 (75)
T ss_pred HHHHHHHHHHHH
Confidence 345555555555
No 367
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=30.06 E-value=1.1e+02 Score=29.61 Aligned_cols=102 Identities=15% Similarity=0.112 Sum_probs=52.5
Q ss_pred eeeeeccccccccceEEEEeecCCCCccccccccccccCccccCccchhhhhccccCCccccccceeEEEEe-c-CCCcc
Q 001085 21 QFHATQVAQLGENALMISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVS-T-GLSKA 98 (1160)
Q Consensus 21 qFhATQVPq~gwDkLfVSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVS-m-GSSKS 98 (1160)
-+.|..+|...+..-+=.+|-+.+|....+|.-..-++-++.|...+.=.+ .++. +. ......|.|- - ...+.
T Consensus 7 V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v---~~~~-~~-~~~~l~v~V~d~~~~~~d 81 (124)
T cd04049 7 LISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTV---EYPG-WG-GDTKLILRIMDKDNFSDD 81 (124)
T ss_pred EEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEe---cCcc-cC-CCCEEEEEEEECccCCCC
Confidence 466777776544322111222223444444432111234677776544222 2222 11 2334456554 2 33467
Q ss_pred cccceeecchhhhhhhcCcceeeccccCCC
Q 001085 99 GFVGEASIDFADYAEASKTSTVSLPLKYSR 128 (1160)
Q Consensus 99 giLGEasINlAdYaea~kp~tVSLPLK~cn 128 (1160)
.+||.+.|.+++++.. .....-+||+.+.
T Consensus 82 ~~iG~~~i~l~~l~~~-~~~~~~~~l~p~~ 110 (124)
T cd04049 82 DFIGEATIHLKGLFEE-GVEPGTAELVPAK 110 (124)
T ss_pred CeEEEEEEEhHHhhhC-CCCcCceEeeccc
Confidence 8999999999999862 3345566666654
No 368
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=30.00 E-value=7.6e+02 Score=30.72 Aligned_cols=49 Identities=24% Similarity=0.367 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHhhhhhhHHHHHHHhH
Q 001085 293 IEIEKLKSELVALARQA----DLSELELQTLRKQIVKESKRAQDLSREVISLK 341 (1160)
Q Consensus 293 ~~iEkLKsE~~sL~Rqa----d~s~lELQtLRKQi~kEsKrgqdLs~EVs~Lk 341 (1160)
.++++||+.+--|-.-. +.-+-||..||+.+-.|-+-...|.|||..|+
T Consensus 569 ~s~delr~qi~el~~ive~lk~~~~kel~kl~~dleeek~mr~~lemei~~lk 621 (627)
T KOG4348|consen 569 NSLDELRAQIIELLCIVEALKKDHGKELEKLRKDLEEEKTMRSNLEMEIEKLK 621 (627)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHH
Confidence 57888888877766543 23345777777777777776677777666554
No 369
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=29.94 E-value=1e+02 Score=38.54 Aligned_cols=106 Identities=25% Similarity=0.325 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhccccCccCcCccccccCC
Q 001085 882 EAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEKKLKDSNRRASVSDGTRTTLRNN 961 (1160)
Q Consensus 882 e~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~~~s~~~~~~~~~t~~~~~n~ 961 (1160)
|.++...-.||..|+..|..-|..| .+=...+.-=..+..+|.+-+|.|.=. +
T Consensus 322 E~lL~~hE~Ei~~Lk~~~~~~k~Il---------------~~v~k~~~l~~~~~~Le~~~~D~~Rl~------------~ 374 (619)
T PF03999_consen 322 EELLELHEEEIERLKEEYESRKPIL---------------ELVEKWESLWEEMEELEESSKDPSRLN------------N 374 (619)
T ss_dssp -------------HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH-CCGG--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHhcChhhhc------------c
Confidence 6778888888888888877655443 222222222223334444545553221 1
Q ss_pred CCCCCCCChhHHHhHHHHHHHhhhhhhhHHHHHhhc-chhhHHHhhhhhhHHHH
Q 001085 962 KSAPVSQGSKEIANLRERIKLLEGQIKSKEIALEAS-TNSFVEKEKDLKNKIEE 1014 (1160)
Q Consensus 962 ~~~~~~~~s~~~a~l~~~ik~~e~~ik~~~~a~~~s-~~~~~~ke~~l~~~i~e 1014 (1160)
.++..-..-|.-..+.-++=.+|.+|+.+=.+.|.- ...|+=.-.++...|++
T Consensus 375 RGg~LLkEEk~rk~i~k~lPkle~~L~~~l~~wE~e~g~pFlv~G~~~le~l~e 428 (619)
T PF03999_consen 375 RGGHLLKEEKERKRIQKKLPKLEEELKKKLEEWEEEHGKPFLVDGERYLEYLEE 428 (619)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--EETTEEHHHHHH-
T ss_pred cccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEcCccHHHHHHH
Confidence 111111222333334444556788888877777654 34566666666666663
No 370
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=29.87 E-value=6.7e+02 Score=27.26 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=12.3
Q ss_pred HHHhhhhhhHhhhHHHHHHHHHHHhhhhhh
Q 001085 780 LEEQKKHDEEDSGALSLEIQQLKADTEKLM 809 (1160)
Q Consensus 780 l~~~~~~~~~~~~~~~~eiq~l~~~~~~l~ 809 (1160)
|....+.+.+.+..+..+++.++..+...+
T Consensus 126 l~~~~~~Dp~~i~~~~~~~~~~~~~anrwT 155 (188)
T PF03962_consen 126 LEKYSENDPEKIEKLKEEIKIAKEAANRWT 155 (188)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444443333
No 371
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=29.58 E-value=1.9e+02 Score=28.66 Aligned_cols=35 Identities=29% Similarity=0.343 Sum_probs=24.3
Q ss_pred cceeEEEEe--cCCCcccccceeecchhhhhhhcCcc
Q 001085 84 ERIYNFIVS--TGLSKAGFVGEASIDFADYAEASKTS 118 (1160)
Q Consensus 84 EkiYKfVVS--mGSSKSgiLGEasINlAdYaea~kp~ 118 (1160)
.+..+|.|- -..++..++|++.|.+++..+--+.+
T Consensus 87 ~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~ 123 (133)
T cd04009 87 GALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGVEDTS 123 (133)
T ss_pred CCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcccccc
Confidence 445566554 23456889999999999988655444
No 372
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=29.53 E-value=9.5e+02 Score=27.95 Aligned_cols=18 Identities=33% Similarity=0.617 Sum_probs=11.7
Q ss_pred HHHHHHHHhhhhhhhHHH
Q 001085 838 EYELLIQRANRERDELES 855 (1160)
Q Consensus 838 ~~~~~~~~~~~e~~~l~~ 855 (1160)
..+-++|.-++|.|-+-+
T Consensus 245 kLDFL~QEmnRE~NTigS 262 (291)
T TIGR00255 245 KLDFMMQELNRESNTLAS 262 (291)
T ss_pred chhHHHHHHhHHHHHHHH
Confidence 456677777777774444
No 373
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=29.50 E-value=3.8e+02 Score=30.47 Aligned_cols=95 Identities=21% Similarity=0.171 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhh---------HHHHH------------------HHHHHHhhhhHHH
Q 001085 714 MKALAEASELRMQKRHLEEMINKASEEALSLRDDY---------ETKLC------------------QLSNQLNVKTDQI 766 (1160)
Q Consensus 714 ~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~---------e~Ki~------------------~L~~qL~~~~~~~ 766 (1160)
..+-.++.+.+.-+.+||.-|.+++.....-.... ...+. +=..-|..-|.|.
T Consensus 9 ~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siLpIVtsQR 88 (248)
T PF08172_consen 9 SELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSILPIVTSQR 88 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHHHHHHHHH
Confidence 34455778889999999999999986633311100 00000 1122344455666
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHH
Q 001085 767 EQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEA 819 (1160)
Q Consensus 767 e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~ 819 (1160)
++.-.+... -|+.......+|+.|++++++|..+|-.|-|++
T Consensus 89 DRFR~Rn~E-----------LE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 89 DRFRQRNAE-----------LEEELRKQQQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655444333 233345667788889999999999999998875
No 374
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=29.23 E-value=4.3e+02 Score=29.08 Aligned_cols=75 Identities=19% Similarity=0.286 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhH--------HHHHHHHHHHHHHHHHHhhhhhhHHHhHHH-HHHHHHHH
Q 001085 571 SLAIINELETHIEGLASELKKQSREFSNFQATI--------KELESQIEALGNELKEQSKGYSDSLATIKE-LEAYIKNL 641 (1160)
Q Consensus 571 Sl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~--------e~L~eelq~s~~eLK~q~~e~S~~l~~i~~-Le~qv~sl 641 (1160)
|.-++-+++-.|..|..|..--.-..++|++-. +....+.|+.-.+-+++..-|-+.+.+|.+ +-..++.|
T Consensus 114 s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~krmf~ei~d~~~e~~pk~ksel 193 (201)
T KOG4603|consen 114 SALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKRMFREIIDKLLEGLPKKKSEL 193 (201)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHH
Confidence 334566666666666655555555555555433 233344677778888888888888888774 66777777
Q ss_pred HHHH
Q 001085 642 EEEL 645 (1160)
Q Consensus 642 ~eel 645 (1160)
.++|
T Consensus 194 ~eel 197 (201)
T KOG4603|consen 194 YEEL 197 (201)
T ss_pred HHHh
Confidence 7766
No 375
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=29.09 E-value=2.4e+02 Score=33.56 Aligned_cols=67 Identities=22% Similarity=0.225 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHhHHHHhHHHHHHHHHHhhhhhhh
Q 001085 296 EKLKSELVALARQADLSELELQTLRKQIVKESKRAQDLSREVISLKEEKDLLKLDCEKLKTFQKRMD 362 (1160)
Q Consensus 296 EkLKsE~~sL~Rqad~s~lELQtLRKQi~kEsKrgqdLs~EVs~Lk~ERD~LK~E~EqLKs~~k~~~ 362 (1160)
..|-.|-..|.=++|.+.-+|.-+--|++.=++.-.++..||-.+|-=||.|.--.++||--.++.+
T Consensus 136 aQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRd 202 (405)
T KOG2010|consen 136 AQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRD 202 (405)
T ss_pred HhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667778999999999999999999999999999999999999999999999997766533
No 376
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=29.05 E-value=7.8e+02 Score=26.79 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=26.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 001085 719 EASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLS 756 (1160)
Q Consensus 719 E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~ 756 (1160)
+...|...|+.|-..|..-..-|.+|-.-|+--+.+|.
T Consensus 71 qi~~Lq~EN~eL~~~leEhq~alelIM~KyReq~~~l~ 108 (181)
T PF05769_consen 71 QIRQLQQENRELRQSLEEHQSALELIMSKYREQMSQLM 108 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777777777777777776666553
No 377
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=28.92 E-value=5.8e+02 Score=25.23 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHH
Q 001085 634 LEAYIKNLEEELEKQAQVYEADLEVVTRAKVEQEQRA 670 (1160)
Q Consensus 634 Le~qv~sl~eel~~Qaq~f~~dl~a~~~~k~eqE~ra 670 (1160)
|+.++.....+.....+.+..||++.-+.|=|+.=.+
T Consensus 2 l~~~~~~~~~ev~~~ve~vA~eLh~~YssKHE~KV~~ 38 (87)
T PF12709_consen 2 LKKKLEESQKEVEKAVEKVARELHALYSSKHETKVKA 38 (87)
T ss_pred HHhHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5677888889999999999999999999999988544
No 378
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=28.72 E-value=5.1e+02 Score=24.49 Aligned_cols=104 Identities=21% Similarity=0.257 Sum_probs=54.8
Q ss_pred HHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHH
Q 001085 822 KESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHN 901 (1160)
Q Consensus 822 ~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~ 901 (1160)
++.|..-+..++..+.+.+..+.....-...+.....-++.........|..+ +.+.+..++..|..+-..
T Consensus 2 k~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~--L~~~e~~ll~~l~~~~~~------- 72 (127)
T smart00502 2 REALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNA--LNKRKKQLLEDLEEQKEN------- 72 (127)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-------
Confidence 44455555555555555555555555555555555555555544444444332 444444444444332221
Q ss_pred HHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhc
Q 001085 902 LKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEKKLKDS 944 (1160)
Q Consensus 902 lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~~~s 944 (1160)
-...|..|+.+|...+.+-..+...++..+...
T Consensus 73 ----------~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~~ 105 (127)
T smart00502 73 ----------KLKVLEQQLESLTQKQEKLSHAINFTEEALNSG 105 (127)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 123456666666666666667777777666543
No 379
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=28.52 E-value=68 Score=24.54 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 001085 476 ETYLLEQKIMDLYSEIEIYRR 496 (1160)
Q Consensus 476 E~~~L~~KI~eL~~ele~y~~ 496 (1160)
|+..|+.+|.||..+|..+++
T Consensus 2 E~~rlr~rI~dLer~L~~C~~ 22 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECRR 22 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHhc
Confidence 678899999999999987764
No 380
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=28.49 E-value=1.2e+03 Score=28.85 Aligned_cols=19 Identities=26% Similarity=0.197 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhhhhhhHH
Q 001085 610 IEALGNELKEQSKGYSDSL 628 (1160)
Q Consensus 610 lq~s~~eLK~q~~e~S~~l 628 (1160)
+..+..+|-++.+.+|.-.
T Consensus 15 ~~~~~~~laq~~k~~s~~~ 33 (459)
T KOG0288|consen 15 LIDLNTELAQCEKAQSRLS 33 (459)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 381
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=28.39 E-value=1.1e+03 Score=28.38 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=14.0
Q ss_pred hhhhhhhHHHHHHHHHhhhhccccCccCcCccccc
Q 001085 924 KGDLKKKEDALNSLEKKLKDSNRRASVSDGTRTTL 958 (1160)
Q Consensus 924 k~~l~kke~~~~~~ek~~~~s~~~~~~~~~t~~~~ 958 (1160)
+.++..-+..+...+..+....=++ --||+-+..
T Consensus 297 ~~~l~~~~~~l~~a~~~l~~~~I~A-P~dG~V~~~ 330 (457)
T TIGR01000 297 NQKLLELESKIKSLKEDSQKGVIKA-PEDGVLHLN 330 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhCCEEEC-CCCeEEEec
Confidence 3333333333333333333333333 356666633
No 382
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=28.03 E-value=1e+03 Score=31.26 Aligned_cols=50 Identities=16% Similarity=0.317 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHhHHHHhH
Q 001085 294 EIEKLKSELVALARQADLSELELQTLRKQIVKESKRAQDLSREVISLKEEKDL 346 (1160)
Q Consensus 294 ~iEkLKsE~~sL~Rqad~s~lELQtLRKQi~kEsKrgqdLs~EVs~Lk~ERD~ 346 (1160)
.+.+|..++..+...... +...+-++++.......+--..+...-.+-|.
T Consensus 228 ~~~~ln~~l~~l~~~~~~---~~~~il~~l~~~i~~~~~~l~~~~~~l~~lD~ 277 (782)
T PRK00409 228 SVVELNNEIRELRNKEEQ---EIERILKELSAKVAKNLDFLKFLNKIFDELDF 277 (782)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666555544322 22233334444444333333334444433333
No 383
>PHA01750 hypothetical protein
Probab=28.00 E-value=1.7e+02 Score=27.58 Aligned_cols=37 Identities=35% Similarity=0.536 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 001085 887 LLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKK 930 (1160)
Q Consensus 887 ~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kk 930 (1160)
-.++|+..|+.|..++|. -.+|+..||..+|..+.|+
T Consensus 39 IV~~ELdNL~~ei~~~ki-------kqDnl~~qv~eik~k~dk~ 75 (75)
T PHA01750 39 IVNSELDNLKTEIEELKI-------KQDELSRQVEEIKRKLDKK 75 (75)
T ss_pred HHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHhhccC
Confidence 357888888888888883 3456888998888776553
No 384
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.82 E-value=9.4e+02 Score=27.34 Aligned_cols=58 Identities=22% Similarity=0.288 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Q 001085 689 ERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDY 748 (1160)
Q Consensus 689 e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~ 748 (1160)
-.||.|+-++-..|.--++.=+-++-+... +.--.|+.+||.-|.+-=-.|+-+|+|-
T Consensus 4 RKLQ~Eid~~lKkv~EG~~~F~~i~~K~~~--~~n~~QKEK~E~DLKkEIKKLQR~RdQI 61 (233)
T PF04065_consen 4 RKLQQEIDRTLKKVQEGVEEFDEIYEKVES--ATNQNQKEKLEADLKKEIKKLQRLRDQI 61 (233)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999998888886655555555555544 4555677888888877777777666643
No 385
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=27.76 E-value=4.1e+02 Score=29.96 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHH
Q 001085 794 LSLEIQQLKADTEKLMMDNKSLSEEA 819 (1160)
Q Consensus 794 ~~~eiq~l~~~~~~l~~e~~~l~e~~ 819 (1160)
+.++.+.+..+..+|..|+..|-+++
T Consensus 184 l~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 184 LKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444433
No 386
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=27.68 E-value=5.3e+02 Score=27.69 Aligned_cols=70 Identities=20% Similarity=0.348 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Q 001085 850 RDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKK 929 (1160)
Q Consensus 850 ~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~k 929 (1160)
+..|..++.-....|...+.+|..++. .|......|+.--+.+...|..+....+.|++++..+++.+++
T Consensus 112 i~~L~~~i~~~q~~~~~~i~~L~~f~~----------~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~~ 181 (184)
T PF05791_consen 112 IEDLQDQIQKNQDKVQALINELNDFKD----------KLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIKK 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHh
Confidence 344556666677777777777776653 4566677777778888999999999999999999999988865
No 387
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=27.64 E-value=6.8e+02 Score=25.63 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=12.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 001085 719 EASELRMQKRHLEEMINKASEEALSLRD 746 (1160)
Q Consensus 719 E~seLr~~~~~LEe~L~~a~~el~~~~~ 746 (1160)
....|..+.+.++..+....++++-++.
T Consensus 95 ~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 95 KERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443
No 388
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=27.51 E-value=7.9e+02 Score=26.34 Aligned_cols=88 Identities=25% Similarity=0.323 Sum_probs=37.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHH
Q 001085 719 EASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEI 798 (1160)
Q Consensus 719 E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~ei 798 (1160)
|+..|+.++..|+-.... -...+.+++.++.++.+++.--++.....+. +|+..+++-......++.++
T Consensus 51 e~~~L~~d~e~L~~q~~~----ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~-------~Le~e~r~L~~~~~~~~~q~ 119 (158)
T PF09744_consen 51 ELELLREDNEQLETQYER----EKELRKQAEEELLELEDQWRQERKDLQSQVE-------QLEEENRQLELKLKNLSDQS 119 (158)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhhhhc
Confidence 555666666555544432 1223444555555554444444333333333 33333333333333333333
Q ss_pred HHHHHhhhhhhhhhhhhhH
Q 001085 799 QQLKADTEKLMMDNKSLSE 817 (1160)
Q Consensus 799 q~l~~~~~~l~~e~~~l~e 817 (1160)
..|...-..|+.+.+.+.+
T Consensus 120 ~rlee~e~~l~~e~~~l~e 138 (158)
T PF09744_consen 120 SRLEEREAELKKEYNRLHE 138 (158)
T ss_pred cccchhHHHHHHHHHHHHH
Confidence 4444444444444444444
No 389
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=27.36 E-value=9.3e+02 Score=27.11 Aligned_cols=61 Identities=25% Similarity=0.316 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHH
Q 001085 709 NEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEI 773 (1160)
Q Consensus 709 nE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el 773 (1160)
||.++..|+.+.-.|-.+...++..+..+.+.+.-|+. .|..|...+.-....++.+....
T Consensus 83 ~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~----~~~~Le~Ki~e~~~~~~~l~ar~ 143 (225)
T COG1842 83 NEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKK----QLAALEQKIAELRAKKEALKARK 143 (225)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888888777777777777777777666655555 55555555555444444444333
No 390
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=27.27 E-value=1.8e+02 Score=26.45 Aligned_cols=39 Identities=21% Similarity=0.470 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHH
Q 001085 575 INELETHIEGLASELKKQSREFSNFQATIKELESQIEAL 613 (1160)
Q Consensus 575 I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s 613 (1160)
|.+||+++-+++..+.+.......++.+++.+++.++.+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888777777666666666666666665443
No 391
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=27.25 E-value=1.6e+03 Score=29.79 Aligned_cols=102 Identities=20% Similarity=0.279 Sum_probs=53.2
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhHHHHHHHhHHHHhHHHHHHHHHHhhhhhh----hHHHHhccccccCCCchHHHHHHHH
Q 001085 311 LSELELQTLRKQIVKESKRAQDLSREVISLKEEKDLLKLDCEKLKTFQKRM----DEAKVRNKLHFQGGDPWVLLEEIRQ 386 (1160)
Q Consensus 311 ~s~lELQtLRKQi~kEsKrgqdLs~EVs~Lk~ERD~LK~E~EqLKs~~k~~----~ea~~~~rl~~e~~D~~~~leELk~ 386 (1160)
+-+.|.-.|++|+-.-...+-.+.--|+-|- .+||.=+.||+..+... .++-.... ..|.-+.-+|+.
T Consensus 21 kae~e~~~lk~~l~~~~~~~~~~e~r~~hld---~aLkec~~qlr~~ree~eq~i~~~~~~~s-----~e~e~~~~~le~ 92 (769)
T PF05911_consen 21 KAEAEAASLKQQLEAATQQKLALEDRVSHLD---GALKECMRQLRQVREEQEQKIHEAVAKKS-----KEWEKIKSELEA 92 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhh---HHHHHHHHHHHHhhHHHHHHHHHHHHHHh-----HHHHHHHHHHHH
Confidence 3445555666666555555555555555554 46777778899887742 22111110 011122223332
Q ss_pred HhhhhhhhhhhHHHHHHHhhhhhHHHHHHhhhHHHHHHHHh
Q 001085 387 ELSYEKDLNANLRLQLQKTQESNAELILAVQDLDEMLEQKN 427 (1160)
Q Consensus 387 EL~~EKelNaNL~LQLqKTQESN~ELvlaVqDLEEmLEQk~ 427 (1160)
-|. .+.-+|.++--.|.=|.-+|++-+.||...+
T Consensus 93 ~l~-------e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~ 126 (769)
T PF05911_consen 93 KLA-------ELSKRLAESAAENSALSKALQEKEKLIAELS 126 (769)
T ss_pred HHH-------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 221 2334555666666667777777666665444
No 392
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=27.24 E-value=9.4e+02 Score=27.14 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHH----hHHHHHHHHHHHHHHHHHH
Q 001085 573 AIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLA----TIKELEAYIKNLEEELEKQ 648 (1160)
Q Consensus 573 ~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~----~i~~Le~qv~sl~eel~~Q 648 (1160)
..|..|+.+++.|.+..+.+.+...+++.+..++-.++-.++..+.+....+..... ....+-.++..+...+.+.
T Consensus 68 ~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~l 147 (256)
T PF14932_consen 68 EDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVSKL 147 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888877777777777788877777777765555554444333333222 2223555555555555555
Q ss_pred HHHH
Q 001085 649 AQVY 652 (1160)
Q Consensus 649 aq~f 652 (1160)
+.-|
T Consensus 148 ~~~~ 151 (256)
T PF14932_consen 148 ASEL 151 (256)
T ss_pred HHHH
Confidence 5433
No 393
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=27.22 E-value=1e+03 Score=27.68 Aligned_cols=71 Identities=24% Similarity=0.250 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHh
Q 001085 793 ALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAES 866 (1160)
Q Consensus 793 ~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~ 866 (1160)
....+.+..+++++....|-..+.++..+++. ++..++..+.+.-.-|.+..+++..|..++..++--+++
T Consensus 190 ~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Ek---e~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 190 TREEEKEEKDRKLELKKEELEELEEELKQKEK---EVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555 666677778888888888888888888888888755443
No 394
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=26.85 E-value=1.1e+03 Score=28.09 Aligned_cols=76 Identities=11% Similarity=0.236 Sum_probs=38.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHH
Q 001085 721 SELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSL 796 (1160)
Q Consensus 721 seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~ 796 (1160)
+.|..-..-+|+.+-+|...|.-|-.+.---+.-....=...+.+...|+++...+++++..++..-..-....+.
T Consensus 230 ~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~ 305 (384)
T KOG0972|consen 230 EQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSS 305 (384)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 3444444455555555555555544433323332222222334555667777777777776665544433333333
No 395
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=26.85 E-value=1.2e+02 Score=29.72 Aligned_cols=44 Identities=25% Similarity=0.366 Sum_probs=29.9
Q ss_pred ceeEEEEec--CCCcccccceeecchhhhhhhc----CcceeeccccCCC
Q 001085 85 RIYNFIVST--GLSKAGFVGEASIDFADYAEAS----KTSTVSLPLKYSR 128 (1160)
Q Consensus 85 kiYKfVVSm--GSSKSgiLGEasINlAdYaea~----kp~tVSLPLK~cn 128 (1160)
....|-|.- +.++..++|.+.|++++..... .-..+++||..-+
T Consensus 61 ~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~ 110 (125)
T cd04021 61 STLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN 110 (125)
T ss_pred CEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC
Confidence 345665552 4446789999999999988632 2244688887655
No 396
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=26.71 E-value=2.2e+02 Score=28.76 Aligned_cols=51 Identities=29% Similarity=0.404 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 001085 887 LLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSL 937 (1160)
Q Consensus 887 ~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ 937 (1160)
.|-.|--.||+|+.-||....+++.--..|+.++-.-...|.|-+.++.++
T Consensus 2 kla~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL 52 (102)
T PF10205_consen 2 KLAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSL 52 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999999999998877777777666666666666666555
No 397
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=26.66 E-value=1.4e+03 Score=29.10 Aligned_cols=198 Identities=24% Similarity=0.295 Sum_probs=113.8
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH-hH--H
Q 001085 654 ADLEVVTRAKVEQEQRAIQAEETLRKTRLKNAN--TAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRM-QK--R 728 (1160)
Q Consensus 654 ~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~--~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~-~~--~ 728 (1160)
.++..+.....+..+|+...++.+..+--=|-- +-+.|+.|.++|+-. |++ .+++..|.++=. +. .
T Consensus 171 ~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLsn~--------ekl-~~~~~~a~~~L~ge~~~~ 241 (557)
T COG0497 171 RELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLSNS--------EKL-AEAIQNALELLSGEDDTV 241 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhH--------HHH-HHHHHHHHHHHhCCCCch
Confidence 344444444555555555555555544433333 334788888887643 222 333344444332 11 1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhh
Q 001085 729 HLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKL 808 (1160)
Q Consensus 729 ~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l 808 (1160)
-.-..|..|...|..+. +|..++.++.+.|+--.-+++....+|...++.+ ..+....+....-+..|+.=..|-
T Consensus 242 ~~~~~l~~a~~~l~~~~-~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~l----e~Dp~~L~~ve~Rl~~L~~l~RKY 316 (557)
T COG0497 242 SALSLLGRALEALEDLS-EYDGKLSELAELLEEALYELEEASEELRAYLDEL----EFDPNRLEEVEERLFALKSLARKY 316 (557)
T ss_pred hHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 23344555555554433 3555888888888877777777777777777777 444444555555555554443333
Q ss_pred hhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhh
Q 001085 809 MMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIED 879 (1160)
Q Consensus 809 ~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kd 879 (1160)
... +.+-++.-+.+..+|+.+..+.. ....|+..+..++.+....-..|...|+--.
T Consensus 317 ~~~---~~~l~~~~~~~~~el~~L~~~~~-----------~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A 373 (557)
T COG0497 317 GVT---IEDLLEYLDKIKEELAQLDNSEE-----------SLEALEKEVKKLKAELLEAAEALSAIRKKAA 373 (557)
T ss_pred CCC---HHHHHHHHHHHHHHHHHhhhhhh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 44444556667777775554333 3456777788888888888888888887443
No 398
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=26.46 E-value=1.1e+02 Score=29.87 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=30.2
Q ss_pred ceeEEEEec--CCCcccccceeecchhhhhhhcCcceeeccccCCCCCce
Q 001085 85 RIYNFIVST--GLSKAGFVGEASIDFADYAEASKTSTVSLPLKYSRSKAV 132 (1160)
Q Consensus 85 kiYKfVVSm--GSSKSgiLGEasINlAdYaea~kp~tVSLPLK~cnsGtV 132 (1160)
....|-|.. ..++..++|++.|.+++.+.. ....==+|+...++-|+
T Consensus 62 ~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~ 110 (120)
T cd04045 62 QKITLEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDEEERLK 110 (120)
T ss_pred CEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCCcceee
Confidence 355666653 344667999999999999987 22333455665544443
No 399
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=26.41 E-value=3.1e+02 Score=26.47 Aligned_cols=58 Identities=28% Similarity=0.278 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 001085 685 ANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALS 743 (1160)
Q Consensus 685 a~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~ 743 (1160)
-..++.|+.+-..+|.++....... .-+-....|+..+..+...+|+.+..+.+++..
T Consensus 42 ~~~~e~lr~~rN~~sk~I~~~~~~~-~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 42 QQELEELRAERNELSKEIGKLKKAG-EDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHTT-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888887666654 222344556666777777777777766665544
No 400
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=26.26 E-value=9.7e+02 Score=26.96 Aligned_cols=65 Identities=22% Similarity=0.225 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh---HHHHHHHHHHHHHhHHHHHhh
Q 001085 716 ALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKT---DQIEQMLKEINNLSNQLEEQK 784 (1160)
Q Consensus 716 A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~---~~~e~m~~el~~~s~ql~~~~ 784 (1160)
|-++|.-|+.....|++-|..+.+.+.-.+. |+.++...-+-+. +-|+.-.+.++.+++.++.+-
T Consensus 2 ae~~va~lnrri~~leeele~aqErl~~a~~----KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qL 69 (205)
T KOG1003|consen 2 AEADVAALNRRIQLLEEELDRAQERLATALQ----KLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQL 69 (205)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4456666777777788888888777776666 7777665555333 333444555555555555443
No 401
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=26.25 E-value=7.2e+02 Score=25.45 Aligned_cols=25 Identities=12% Similarity=0.348 Sum_probs=10.6
Q ss_pred hhhhHHHHHHHHHHHhhhhHHHHHH
Q 001085 745 RDDYETKLCQLSNQLNVKTDQIEQM 769 (1160)
Q Consensus 745 ~~~~e~Ki~~L~~qL~~~~~~~e~m 769 (1160)
+.+...++-.|...|..-+-.++++
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL 35 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGEL 35 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4444445555555554444444444
No 402
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=26.23 E-value=2.5e+02 Score=26.34 Aligned_cols=62 Identities=21% Similarity=0.317 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHhHHHHhHHHHHHHHH
Q 001085 293 IEIEKLKSELVALARQADLSELELQTLRKQIVKESKRAQDLSREVISLKEEKDLLKLDCEKL 354 (1160)
Q Consensus 293 ~~iEkLKsE~~sL~Rqad~s~lELQtLRKQi~kEsKrgqdLs~EVs~Lk~ERD~LK~E~EqL 354 (1160)
++++.||.+|+-|.+.+-...++|..|.-.+=.--.+--+++...-..+.+-+.+|.++..+
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHDLaEdLP~~w~~i~~vA~~ty~a~~~l~~ak~~L~~~ 63 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHDLAEDLPTNWEEIPEVAQKTYDAYAELDEAKAELKAA 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999998876655555555666777777777777777765543
No 403
>PRK10869 recombination and repair protein; Provisional
Probab=26.11 E-value=1.4e+03 Score=28.72 Aligned_cols=73 Identities=21% Similarity=0.199 Sum_probs=41.3
Q ss_pred hhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001085 622 KGYSDSLATIKELEAYIKNLEEELEKQAQVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQ 701 (1160)
Q Consensus 622 ~e~S~~l~~i~~Le~qv~sl~eel~~Qaq~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~q 701 (1160)
..|++....+..+-..+..+..+|......++-|.+.+. +-++|. ..|++...+|..+.+-+-.-...+-.+
T Consensus 261 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~----~ie~Rl----~~l~~L~rKyg~~~~~~~~~~~~l~~e 332 (553)
T PRK10869 261 SKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLA----ELEQRL----SKQISLARKHHVSPEELPQHHQQLLEE 332 (553)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHH----HHHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 455666666666667777777777766666655654433 223343 235555566666666555444444333
Q ss_pred h
Q 001085 702 M 702 (1160)
Q Consensus 702 m 702 (1160)
+
T Consensus 333 L 333 (553)
T PRK10869 333 Q 333 (553)
T ss_pred H
Confidence 3
No 404
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=26.10 E-value=9.1e+02 Score=26.60 Aligned_cols=102 Identities=15% Similarity=0.211 Sum_probs=61.6
Q ss_pred HHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhh
Q 001085 829 LAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVE 908 (1160)
Q Consensus 829 ~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~ 908 (1160)
++++...+.|.+..++........-..-+.....-+......++.|+.+=+.=..-+.....=.........+=.+.|..
T Consensus 69 veqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLea 148 (188)
T PF05335_consen 69 VEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEA 148 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677888888888888777777778888888888888888887644333333333333333333333343334444
Q ss_pred hhHHHHHHHHHHHHhhhhhhhh
Q 001085 909 DESEKEKLRKQAFQLKGDLKKK 930 (1160)
Q Consensus 909 ~e~eke~l~kqv~~lk~~l~kk 930 (1160)
-..--+.|.+|+...+.|+.+-
T Consensus 149 Ak~Rve~L~~QL~~Ar~D~~~t 170 (188)
T PF05335_consen 149 AKRRVEELQRQLQAARADYEKT 170 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455666666666666543
No 405
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=26.08 E-value=80 Score=29.00 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=28.1
Q ss_pred HHHhhhhhHHHHHHH----HHHHHHHHHHhhhhcchhhhHh
Q 001085 491 IEIYRRDKDELETQM----EQLALDYEILKQENHDISYKLE 527 (1160)
Q Consensus 491 le~y~~~~~eLe~k~----eqL~~dye~LkQEN~dis~KLE 527 (1160)
+....+...+|..+- ..|-.+++-|+++|.|+.|+|-
T Consensus 5 v~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~~kL~ 45 (60)
T PF14916_consen 5 VQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKDLTFKLI 45 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeee
Confidence 444445677887555 4478889999999999999984
No 406
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=25.89 E-value=1.1e+02 Score=30.92 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=48.1
Q ss_pred eeecccccc---ccceEEE--EeecCCCCccccccccccccCccccCccchhhhhccccCCccccccceeEEEEec--CC
Q 001085 23 HATQVAQLG---ENALMIS--VVPLDVGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVST--GL 95 (1160)
Q Consensus 23 hATQVPq~g---wDkLfVS--iVp~DtGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVSm--GS 95 (1160)
+|..+|... --..||. +.|.+ |+... .-|+.|..|+| +|+|--+=... ....++.++...|.|.- +.
T Consensus 23 karnL~~~~~~~~~dpyVkv~llp~~-~~~~~-~~kT~v~~~t~---nPvfnEtF~f~-i~~~~l~~~~L~~~V~~~~~~ 96 (138)
T cd08408 23 KGSNFKNLAMNKAPDTYVKLTLLNSD-GQEIS-KSKTSIRRGQP---DPEFKETFVFQ-VALFQLSEVTLMFSVYNKRKM 96 (138)
T ss_pred EecCCCccccCCCCCeeEEEEEEeCC-Cccee-eccceeecCCC---CCcEeeeEEEE-CCHHHhCccEEEEEEEECCCC
Confidence 455666542 2233444 45544 33221 23556777774 78875433222 44556788888888873 56
Q ss_pred Ccccccceeecchh
Q 001085 96 SKAGFVGEASIDFA 109 (1160)
Q Consensus 96 SKSgiLGEasINlA 109 (1160)
++..+||+++|.+.
T Consensus 97 ~~~~~iG~v~l~~~ 110 (138)
T cd08408 97 KRKEMIGWFSLGLN 110 (138)
T ss_pred CCCcEEEEEEECCc
Confidence 88999999877654
No 407
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=25.77 E-value=5.7e+02 Score=28.94 Aligned_cols=109 Identities=23% Similarity=0.321 Sum_probs=0.0
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHhHHHHhHHHHHHHHHHhh-hh
Q 001085 281 TFTRERSQQASDIEIEKLKSELVALARQADLSELELQTLRKQIVKESKRAQDLSREVISLKEEKDLLKLDCEKLKTF-QK 359 (1160)
Q Consensus 281 ~l~rerl~eAse~~iEkLKsE~~sL~Rqad~s~lELQtLRKQi~kEsKrgqdLs~EVs~Lk~ERD~LK~E~EqLKs~-~k 359 (1160)
++.++.+...++..+-+-+.+..+-+..++. -.+|+++. .-..-|...++.|-+.||-|+|++|++ +.
T Consensus 73 ~v~ndsl~~vsk~~vtkaqq~~v~~QQ~~~f-----~kiRsel~------S~e~sEF~~lr~e~EklkndlEk~ks~lr~ 141 (220)
T KOG3156|consen 73 TVLNDSLETVSKELVTKAQQEKVSYQQKVDF-----AKIRSELV------SIERSEFANLRAENEKLKNDLEKLKSSLRH 141 (220)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHhccccccCCC---------chHHHHHHHHHhhhhhhhhhhHHHHHH
Q 001085 360 RMDEAKVRNKLHFQGGD---------PWVLLEEIRQELSYEKDLNANLRLQLQ 403 (1160)
Q Consensus 360 ~~~ea~~~~rl~~e~~D---------~~~~leELk~EL~~EKelNaNL~LQLq 403 (1160)
.+.-+.+..|+.+.-+- +...+.|+--.+.=|= +||+.|+.
T Consensus 142 ei~~~~a~~rLdLNLEkgr~~d~~~~~~l~~~e~s~kId~Ev---~~lk~qi~ 191 (220)
T KOG3156|consen 142 EISKTTAEFRLDLNLEKGRIKDESSSHDLQIKEISTKIDQEV---TNLKTQIE 191 (220)
T ss_pred HHHhcchhceeecchhhccccchhhhcchhHhHHHHHHHHHH---HHHHHHHH
No 408
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=25.72 E-value=8.4e+02 Score=26.03 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=32.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 001085 659 VTRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQMASSFD 707 (1160)
Q Consensus 659 ~~~~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~qmsSt~e 707 (1160)
+..++.+-+++.-.| -+.+.-+..-+...|+.++..||++++|+|=
T Consensus 91 ~~eA~~ea~r~~~~A---~~~Ie~Ek~~Al~elr~eva~Lav~iAsk~~ 136 (154)
T PRK06568 91 TKEIEEFLEHKKSDA---IQLIQNQKSTASKELQDEFCDEVIKLVSEYF 136 (154)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443333 5566677777888999999999999998874
No 409
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.69 E-value=1.5e+03 Score=29.03 Aligned_cols=59 Identities=22% Similarity=0.146 Sum_probs=34.6
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001085 585 LASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQAQVYEADLE 657 (1160)
Q Consensus 585 LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~~Qaq~f~~dl~ 657 (1160)
+-.|+.+++.+..=+++|+.+++--+.+. .-||.+=...|+.|.+.|..|-++-.+.-.
T Consensus 234 ~~ae~~~~~~e~~llr~t~~~~e~riEtq--------------kqtl~ardesIkkLlEmLq~kgmg~~~~~~ 292 (654)
T KOG4809|consen 234 RLAELLTTKEEQFLLRSTDPSGEQRIETQ--------------KQTLDARDESIKKLLEMLQRKGMGRSNQPR 292 (654)
T ss_pred HHHHhhhHHHHHHHHHhcCchHHHHHHHH--------------HhhhhhHHHHHHHHHHHHHHhhcccccchh
Confidence 44566666666666777777666444222 224445556677777777776665554443
No 410
>PRK10869 recombination and repair protein; Provisional
Probab=25.60 E-value=1.4e+03 Score=28.64 Aligned_cols=29 Identities=7% Similarity=0.210 Sum_probs=18.8
Q ss_pred hhhhhHHHHHHHHHHHHHhhHHHHHHHhh
Q 001085 848 RERDELESTIALVKKEAESSVEEVQRIQR 876 (1160)
Q Consensus 848 ~e~~~l~~~~~~~k~eae~~~~el~~~~~ 876 (1160)
..+.+|...+..++++....-..|+..|.
T Consensus 341 ~~l~~Le~e~~~l~~~l~~~A~~LS~~R~ 369 (553)
T PRK10869 341 DDLETLALAVEKHHQQALETAQKLHQSRQ 369 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777777777777776664
No 411
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=25.53 E-value=8.7e+02 Score=26.20 Aligned_cols=75 Identities=25% Similarity=0.244 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhh---HHHHHHH----hhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhh
Q 001085 836 VKEYELLIQRANRERDELESTIALVKKEAESS---VEEVQRI----QRIEDEKEAAVELLKSELELLKVQCHNLKQALVE 908 (1160)
Q Consensus 836 ~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~---~~el~~~----~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~ 908 (1160)
.+|++++-...-.|+.+-.+|-++|-+|.|+. +-|++-| ..-|..=|.+++.+++-+-.=-.+++.|+.--++
T Consensus 2 keE~~~~~~~l~~Ek~eHaKTK~lLake~EKLqfAlgeieiL~kQl~rek~afe~a~~~vk~k~~~Es~k~dqL~~KC~~ 81 (153)
T PF15175_consen 2 KEEFEAVEKKLEEEKAEHAKTKALLAKESEKLQFALGEIEILSKQLEREKLAFEKALGSVKSKVLQESSKKDQLITKCNE 81 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777788899999999999999987 5666543 3456666888888888887666777777766655
Q ss_pred hh
Q 001085 909 DE 910 (1160)
Q Consensus 909 ~e 910 (1160)
-+
T Consensus 82 ~~ 83 (153)
T PF15175_consen 82 IE 83 (153)
T ss_pred HH
Confidence 44
No 412
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=25.45 E-value=2e+02 Score=28.39 Aligned_cols=30 Identities=17% Similarity=0.285 Sum_probs=20.6
Q ss_pred cccceeEEEEe--cCCCcccccceeecchhhh
Q 001085 82 ISERIYNFIVS--TGLSKAGFVGEASIDFADY 111 (1160)
Q Consensus 82 ~~EkiYKfVVS--mGSSKSgiLGEasINlAdY 111 (1160)
+.+....|-|- -..++..+||++.|.+++.
T Consensus 80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred hCCCEEEEEEEECCCCCCCcEeEEEEECCccC
Confidence 34555666554 2345678999999998875
No 413
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=25.24 E-value=1.1e+03 Score=27.06 Aligned_cols=144 Identities=21% Similarity=0.293 Sum_probs=69.9
Q ss_pred HHhhHHHHHHhhHHHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHH
Q 001085 652 YEADLEVVTRAKVEQEQR---AIQAEETLRKTRLKNANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKR 728 (1160)
Q Consensus 652 f~~dl~a~~~~k~eqE~r---ai~aEeaLrktR~~na~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~ 728 (1160)
|..-+..+.....++... =++|++.|..---.+......+ .+......+.|+-....-.....++.+..
T Consensus 150 ~~~~~~~~~~~~~~Y~~~p~Kg~ka~evL~~fl~~~~~~~~~i--------lq~d~~L~~~ek~~~~~~~k~e~~e~e~~ 221 (297)
T PF02841_consen 150 YQLFLKELDELEKEYEQEPGKGVKAEEVLQEFLQSKESMENSI--------LQADQQLTEKEKEIEEEQAKAEAAEKEKE 221 (297)
T ss_dssp HHHHHHHHHHHHHHHHHSS---TTHHHHHHHHHHHCHHHHHHH--------HHH-TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444443 3457777765432222111111 23333444445544444444445566666
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhh
Q 001085 729 HLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKL 808 (1160)
Q Consensus 729 ~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l 808 (1160)
.+++....-...+......|+..+..|..++..... ++..+.+.... ..++.+.+-....|..++..|..+|..|
T Consensus 222 ~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~---~~~~e~e~~l~--~k~~eq~~~l~e~~~~~~~~l~~ei~~L 296 (297)
T PF02841_consen 222 KLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEERE---QLLQEQERLLE--QKLQEQEELLKEGFQEEAEKLQKEIQDL 296 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH--HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 777766666666666677777777777776654433 23333332211 1112222223456777777777777655
No 414
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=25.08 E-value=1.2e+03 Score=27.64 Aligned_cols=109 Identities=20% Similarity=0.272 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHH----hhhhhhHHHhHH--HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHH-HH
Q 001085 595 EFSNFQATIKELESQIEALGNELKEQ----SKGYSDSLATIK--ELEAYIKNLEEELEKQAQVYEADLEVVTRAKVE-QE 667 (1160)
Q Consensus 595 ~f~~~qst~e~L~eelq~s~~eLK~q----~~e~S~~l~~i~--~Le~qv~sl~eel~~Qaq~f~~dl~a~~~~k~e-qE 667 (1160)
.++++-..|+.....||-...-|-+= ..+.-.+++.|+ |-+-+.+-|..|.. |..++|-|-.+-++ ..
T Consensus 147 ~~KKlg~nIEKSvKDLqRctvSL~RYr~~lkee~d~S~k~ik~~F~~l~~cL~dREva-----Ll~EmdkVK~EAmeiL~ 221 (302)
T PF07139_consen 147 SNKKLGPNIEKSVKDLQRCTVSLTRYRVVLKEEMDSSIKKIKQTFAELQSCLMDREVA-----LLAEMDKVKAEAMEILD 221 (302)
T ss_pred cccccCccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhH------HHHHHHHHHH
Q 001085 668 QRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQK------RHLEEMINKA 737 (1160)
Q Consensus 668 ~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~------~~LEe~L~~a 737 (1160)
.|--+| +|++||+..++.|-++ .+.|||++. ++..|.|-.|
T Consensus 222 aRqkkA-------------------eeLkrltd~A~~MsE~----------Ql~ELRadIK~fvs~rk~de~lg~~ 268 (302)
T PF07139_consen 222 ARQKKA-------------------EELKRLTDRASQMSEE----------QLAELRADIKHFVSERKYDEELGRA 268 (302)
T ss_pred HHHHHH-------------------HHHHHHHHHHhhcCHH----------HHHHHHHHHHHHhhhhhhHHHHhHh
No 415
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=25.01 E-value=9.6e+02 Score=26.49 Aligned_cols=37 Identities=32% Similarity=0.378 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHH
Q 001085 878 EDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKE 914 (1160)
Q Consensus 878 kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke 914 (1160)
..--++....|+.|+..|..+...|...|.....--+
T Consensus 145 ~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~ 181 (240)
T PF12795_consen 145 SPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQE 181 (240)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHH
Confidence 4556777888888888888888888777765544333
No 416
>PRK00106 hypothetical protein; Provisional
Probab=24.78 E-value=1.5e+03 Score=28.69 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHhhhhhhccccccc
Q 001085 1116 NQCMESELKDMQERYSEISLKFAEV 1140 (1160)
Q Consensus 1116 ~~~~e~el~em~~ryse~sl~faev 1140 (1160)
..++++=++.|.+ --+|...|.-|
T Consensus 450 ~~s~~~~i~rl~~-lE~ia~~~~gV 473 (535)
T PRK00106 450 NESMENYIKRLRD-LEEIANSFDGV 473 (535)
T ss_pred cCCHHHHHHHHHH-HHHHHhcCCcH
Confidence 3344444444432 23445555544
No 417
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=24.67 E-value=1.2e+03 Score=27.37 Aligned_cols=49 Identities=29% Similarity=0.403 Sum_probs=37.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHH
Q 001085 568 LSDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNE 616 (1160)
Q Consensus 568 ~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~e 616 (1160)
|.+-+..+.+-..+|..|+.+|..+.-....-+...+.+.+++..-.++
T Consensus 3 l~~GL~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~ 51 (344)
T PF12777_consen 3 LENGLDKLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEE 51 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788888888999999888888877777777777777776443333
No 418
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=24.55 E-value=1.1e+03 Score=26.92 Aligned_cols=111 Identities=14% Similarity=0.124 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHhhhhhH----------HHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHH
Q 001085 850 RDELESTIALVKKEAESSVEEVQRIQRIEDE----------KEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQ 919 (1160)
Q Consensus 850 ~~~l~~~~~~~k~eae~~~~el~~~~~~kde----------ke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kq 919 (1160)
+..+...+..++.+.+.+..++.+.+.+.+. ....+...+..+...+.++..++..... .+...++.+
T Consensus 109 i~~~~~~l~~ak~~l~~a~~~~~r~~~L~~~g~vs~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~ 186 (331)
T PRK03598 109 IAQARAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQATLKSAQDKLSQYREGNRP--QDIAQAKAS 186 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH--HHHHHHHHH
Confidence 3444455556666666666666666654332 2233334444444455555444443332 233444455
Q ss_pred HHHhhhhhhhhHHHHHHHHHhhhhccccCccCcCccccccCCCCCCCCCCh
Q 001085 920 AFQLKGDLKKKEDALNSLEKKLKDSNRRASVSDGTRTTLRNNKSAPVSQGS 970 (1160)
Q Consensus 920 v~~lk~~l~kke~~~~~~ek~~~~s~~~~~~~~~t~~~~~n~~~~~~~~~s 970 (1160)
+..++..+++ ....+.+..=+ +--||.-.+..=..+..|..|.
T Consensus 187 l~~~~~~l~~-------a~~~l~~~~I~-AP~dG~V~~~~~~~G~~V~~G~ 229 (331)
T PRK03598 187 LAQAQAALAQ-------AELNLQDTELI-APSDGTILTRAVEPGTMLNAGS 229 (331)
T ss_pred HHHHHHHHHH-------HHHHHhcCEEE-CCCCeEEEeccCCCCCCcCCCC
Confidence 5555554444 33333222222 2345555544333444444443
No 419
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=23.96 E-value=5.1e+02 Score=30.87 Aligned_cols=94 Identities=20% Similarity=0.276 Sum_probs=55.6
Q ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhh
Q 001085 849 ERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLK 928 (1160)
Q Consensus 849 e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~ 928 (1160)
|.++|++.+..+.+-...+.+-+..+..+-+.--..|..-.-.+..|+.-...++.+.+. .-...+.+|+.+++
T Consensus 5 EW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~------e~~~~i~~L~~~Ik 78 (330)
T PF07851_consen 5 EWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSA------EERELIEKLEEDIK 78 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCh------hHHHHHHHHHHHHH
Confidence 455666666666666655555554444444444333333333333333333333333332 34566788899999
Q ss_pred hhHHHHHHHHHhhhhccccC
Q 001085 929 KKEDALNSLEKKLKDSNRRA 948 (1160)
Q Consensus 929 kke~~~~~~ek~~~~s~~~~ 948 (1160)
.+...+..+|.-+...||.-
T Consensus 79 ~r~~~l~DmEa~LPkkNGly 98 (330)
T PF07851_consen 79 ERRCQLFDMEAFLPKKNGLY 98 (330)
T ss_pred HHHhhHHHHHhhCCCCCCcc
Confidence 99999999998886668875
No 420
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=23.94 E-value=1.4e+02 Score=29.51 Aligned_cols=84 Identities=14% Similarity=0.217 Sum_probs=43.9
Q ss_pred eeeeeccccccccc---eEEEEeecCCCCccccccccccccCccccCccchhhh-hccccCCccccccceeEEEEe--cC
Q 001085 21 QFHATQVAQLGENA---LMISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYETV-KFVREPKSGKISERIYNFIVS--TG 94 (1160)
Q Consensus 21 qFhATQVPq~gwDk---LfVSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyETv-kl~qD~kTkk~~EkiYKfVVS--mG 94 (1160)
...|.++|...+.. -||.|.=...|+. ....|+.|..++| +|+|.-+ .| +.....+....+.|-|. -.
T Consensus 21 vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~-~~~~kT~v~k~t~---nP~w~e~F~f--~v~~~~~~~~~l~~~v~d~d~ 94 (136)
T cd08404 21 VLKARHLPKMDVSGLADPYVKVNLYYGKKR-ISKKKTHVKKCTL---NPVFNESFVF--DIPSEELEDISVEFLVLDSDR 94 (136)
T ss_pred EEEeeCCCccccCCCCCeEEEEEEEcCCce-eeeEcCccccCCC---CCccCceEEE--ECCHHHhCCCEEEEEEEECCC
Confidence 46677777654332 2343322111322 2223444555543 5655332 12 22333445666777554 24
Q ss_pred CCcccccceeecchhh
Q 001085 95 LSKAGFVGEASIDFAD 110 (1160)
Q Consensus 95 SSKSgiLGEasINlAd 110 (1160)
.++..++|++.|++..
T Consensus 95 ~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 95 VTKNEVIGRLVLGPKA 110 (136)
T ss_pred CCCCccEEEEEECCcC
Confidence 5678899999998876
No 421
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=23.37 E-value=6.3e+02 Score=23.75 Aligned_cols=56 Identities=29% Similarity=0.366 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhh-HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHH
Q 001085 855 STIALVKKEAESS-VEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRK 918 (1160)
Q Consensus 855 ~~~~~~k~eae~~-~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~k 918 (1160)
..|+.|+.|.++. ..|+. -...|..|...+..+-.+..+|+.-+..-+.+.+.|+.
T Consensus 12 e~Ia~L~eEGekLSk~el~--------~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELK--------LNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777665 33333 34667777777777777777777666655555555544
No 422
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=23.27 E-value=1.2e+03 Score=27.04 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001085 574 IINELETHIEGLASELK 590 (1160)
Q Consensus 574 ~I~~Le~qi~~LE~Ele 590 (1160)
.|..|+.++..++.++.
T Consensus 215 ~i~~L~~~l~~~~~~l~ 231 (362)
T TIGR01010 215 LISTLEGELIRVQAQLA 231 (362)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 423
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=23.27 E-value=3.9e+02 Score=27.02 Aligned_cols=106 Identities=18% Similarity=0.242 Sum_probs=0.0
Q ss_pred hHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHH-----------------------
Q 001085 788 EEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQ----------------------- 844 (1160)
Q Consensus 788 ~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~----------------------- 844 (1160)
+.....+..+++.|+.+++.|......|...+..-......|+.++......++++.
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~ 84 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGA 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCC
Q ss_pred ------HhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001085 845 ------RANRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELE 893 (1160)
Q Consensus 845 ------~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~ 893 (1160)
....-+..|.+.+..+.+..+.....|..++.--+.....+..|+-+.+
T Consensus 85 g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~ 139 (140)
T PRK03947 85 GYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEAA 139 (140)
T ss_pred CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 424
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=23.09 E-value=1.3e+02 Score=27.58 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 001085 475 KETYLLEQKIMDLYSEIEIYRRDKDELE 502 (1160)
Q Consensus 475 kE~~~L~~KI~eL~~ele~y~~~~~eLe 502 (1160)
.|++.|+.+|.+|...+..+..++..|.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888866665544444444443
No 425
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.94 E-value=4.1e+02 Score=25.46 Aligned_cols=52 Identities=27% Similarity=0.398 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 001085 884 AVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALN 935 (1160)
Q Consensus 884 ~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~ 935 (1160)
.|..||-||+.||...+-|.+-.+.-.--.|.|...-.|||.+-.-=.+.+.
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777766666555555555666777777777665443333333
No 426
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=22.82 E-value=1.4e+03 Score=27.59 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHH
Q 001085 911 SEKEKLRKQAFQLKGDLKKKEDALN 935 (1160)
Q Consensus 911 ~eke~l~kqv~~lk~~l~kke~~~~ 935 (1160)
.+...++.++..++..|..-++.+.
T Consensus 291 ~~l~~~~~~l~~~~~~l~~a~~~l~ 315 (457)
T TIGR01000 291 QEITDLNQKLLELESKIKSLKEDSQ 315 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555555543
No 427
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=22.74 E-value=3.7e+02 Score=29.82 Aligned_cols=95 Identities=16% Similarity=0.270 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHhhhh
Q 001085 687 TAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALSLR---DDYETKLCQLSNQLNVKT 763 (1160)
Q Consensus 687 ~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~---~~~e~Ki~~L~~qL~~~~ 763 (1160)
+..+|.+|+..|-..|+..-.+.+.- .-..-+...+.++.+|.+|.==..+|+.+. -.....+..+.+-|+.-.
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~---~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie 173 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESR---RSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIE 173 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHH
Confidence 34478888888777774332222211 111223456666777777776666666653 223345666666677666
Q ss_pred HHHHHHHHHHHHHhHHHHHhh
Q 001085 764 DQIEQMLKEINNLSNQLEEQK 784 (1160)
Q Consensus 764 ~~~e~m~~el~~~s~ql~~~~ 784 (1160)
.|++.+-.=|..+..+|+.++
T Consensus 174 ~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 174 EQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 777666666666666665543
No 428
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=22.70 E-value=2.1e+02 Score=35.33 Aligned_cols=45 Identities=11% Similarity=0.256 Sum_probs=27.3
Q ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhH
Q 001085 849 ERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCH 900 (1160)
Q Consensus 849 e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~ 900 (1160)
...+|+++|+.++. |+..|.....+-+..|..|.+|+..|+.|..
T Consensus 77 kasELEKqLaaLrq-------Elq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 77 TAAQMQKQYEEIRR-------ELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHH-------HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44566677766643 3334444444556777777777777777763
No 429
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=22.55 E-value=1e+03 Score=25.90 Aligned_cols=52 Identities=25% Similarity=0.310 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhH
Q 001085 766 IEQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSE 817 (1160)
Q Consensus 766 ~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e 817 (1160)
...++.+++....++..++..-+.....=-..|+.++.++..+....+.+.+
T Consensus 105 R~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwTD 156 (188)
T PF03962_consen 105 REELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWTD 156 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444333333332233444444444444433333333
No 430
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=22.52 E-value=2.9e+02 Score=27.07 Aligned_cols=42 Identities=36% Similarity=0.427 Sum_probs=27.7
Q ss_pred hhhhHhhhHHHHHHHHHHHhhh------hhhhhhhhhhHHHHHHHhHH
Q 001085 785 KHDEEDSGALSLEIQQLKADTE------KLMMDNKSLSEEAEQKESLR 826 (1160)
Q Consensus 785 ~~~~~~~~~~~~eiq~l~~~~~------~l~~e~~~l~e~~e~~e~~~ 826 (1160)
.+..+...++..||+.|++.++ +..+||..|.+++..=.++-
T Consensus 20 ~~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 20 SYLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555888999999988665 45667777777655444433
No 431
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=22.43 E-value=6.4e+02 Score=24.03 Aligned_cols=49 Identities=22% Similarity=0.315 Sum_probs=33.3
Q ss_pred eeEEEEec--CCCcccccceeecchhhhhhhcCcceeeccccCC----CCCceeeEeeee
Q 001085 86 IYNFIVST--GLSKAGFVGEASIDFADYAEASKTSTVSLPLKYS----RSKAVLHVSIQR 139 (1160)
Q Consensus 86 iYKfVVSm--GSSKSgiLGEasINlAdYaea~kp~tVSLPLK~c----nsGtVLHVtIQ~ 139 (1160)
...|-|.. +. +..++|.+.+.+.+.. +....+||+.- -.+.-|+|+|+.
T Consensus 73 ~l~~~V~d~~~~-~~~~iG~~~~~l~~l~----~g~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 73 FLRFVVYDEDSG-DDDFLGQACLPLDSLR----QGYRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred EEEEEEEeCCCC-CCcEeEEEEEEhHHhc----CceEEEEecCCCCCCCcceeEEEEEEE
Confidence 34666663 33 8899999999998864 34566788642 346677777753
No 432
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=22.42 E-value=6.5e+02 Score=23.62 Aligned_cols=84 Identities=19% Similarity=0.316 Sum_probs=0.0
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHH---------------HHHHHHHHHHHHHHHHhh
Q 001085 591 KQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAY---------------IKNLEEELEKQAQVYEAD 655 (1160)
Q Consensus 591 ~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~q---------------v~sl~eel~~Qaq~f~~d 655 (1160)
.+...|..++.++..+...++. |+.+..++..++..|..+... +..+...|..+...+..+
T Consensus 2 e~~~~~~~l~~~l~~~~~q~~~----l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~ 77 (106)
T PF01920_consen 2 ELQNKFQELNQQLQQLEQQIQQ----LERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKE 77 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Q 001085 656 LEVVTRAKVEQEQRAIQAEETLR 678 (1160)
Q Consensus 656 l~a~~~~k~eqE~rai~aEeaLr 678 (1160)
++.+......-+.+....+..|+
T Consensus 78 i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 78 IKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 433
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=22.18 E-value=1e+03 Score=25.65 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=38.3
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHhhhhhhHHHH
Q 001085 701 QMASSFDANEKVAMKALAEASELRMQK----RHLEEMINKASEEALSLRDDYETKL 752 (1160)
Q Consensus 701 qmsSt~eenE~~~~~A~~E~seLr~~~----~~LEe~L~~a~~el~~~~~~~e~Ki 752 (1160)
-+...+++|...+...+.+|...+.+- +..|+.|.+|+.+.+.++.+-..++
T Consensus 34 pI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~ 89 (155)
T PRK06569 34 KAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSL 89 (155)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888888888888888877764 5667888888888888777644444
No 434
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=22.11 E-value=1.5e+02 Score=35.05 Aligned_cols=58 Identities=26% Similarity=0.431 Sum_probs=30.2
Q ss_pred HHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhccccC-ccCcC
Q 001085 896 KVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEKKLKDSNRRA-SVSDG 953 (1160)
Q Consensus 896 ~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~~~s~~~~-~~~~~ 953 (1160)
....+++...++.=|-.-+.+...+..+...+++-++-+..+|.+.+-+|-|+ +|..|
T Consensus 143 ~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNiRIiGiPEg 201 (370)
T PF02994_consen 143 NSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNIRIIGIPEG 201 (370)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCceeEEecCCC
Confidence 33444444444443444444444455555555556666777888887787776 44444
No 435
>PF14282 FlxA: FlxA-like protein
Probab=22.07 E-value=4.1e+02 Score=26.35 Aligned_cols=48 Identities=23% Similarity=0.423 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHHhHHH
Q 001085 855 STIALVKKEAESSVEEVQRIQRI----EDEKEAAVELLKSELELLKVQCHNL 902 (1160)
Q Consensus 855 ~~~~~~k~eae~~~~el~~~~~~----kdeke~~~~~l~se~~~l~~q~~~l 902 (1160)
..|+.|++......++|..+..- .++|...+..|+.+|..|.+|.-.|
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQL 70 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555552 2356666666666666666665433
No 436
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.06 E-value=3.7e+02 Score=28.64 Aligned_cols=32 Identities=34% Similarity=0.452 Sum_probs=19.1
Q ss_pred HhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHH
Q 001085 789 EDSGALSLEIQQLKADTEKLMMDNKSLSEEAE 820 (1160)
Q Consensus 789 ~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e 820 (1160)
+.......||+.|+.++++...+...|.+|++
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777765555555555443
No 437
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=22.02 E-value=3.1e+02 Score=34.03 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 001085 571 SLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNEL 617 (1160)
Q Consensus 571 Sl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eL 617 (1160)
.-.++.+||.+++.|+.|++.=...-..+++.++.|+.++..++..+
T Consensus 74 qQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 74 MQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33466677777777776666333333455666666666655555554
No 438
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=21.94 E-value=7.8e+02 Score=29.40 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 001085 877 IEDEKEAAVELLKSELELLKVQCHNLK 903 (1160)
Q Consensus 877 ~kdeke~~~~~l~se~~~l~~q~~~lk 903 (1160)
+=+||-.-|+.||-.|..++..-...+
T Consensus 188 vLNeKK~KIR~lq~~L~~~~~~~~~~~ 214 (342)
T PF06632_consen 188 VLNEKKAKIRELQRLLASAKEEEKSPK 214 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhhccccchh
Confidence 346777777777777777665444443
No 439
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=21.91 E-value=1e+03 Score=25.80 Aligned_cols=15 Identities=47% Similarity=0.377 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHhhh
Q 001085 792 GALSLEIQQLKADTE 806 (1160)
Q Consensus 792 ~~~~~eiq~l~~~~~ 806 (1160)
..+..+++.|++.++
T Consensus 173 ~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 173 DFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHh
Confidence 345555555555554
No 440
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=21.66 E-value=4.3e+02 Score=27.99 Aligned_cols=88 Identities=30% Similarity=0.447 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001085 574 IINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQAQVYE 653 (1160)
Q Consensus 574 ~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~~Qaq~f~ 653 (1160)
.|-.+=+|-..|+.|+.+=+..|.||-+... .|+|++.- .-..+..+|.+|+..+++|.|.+-
T Consensus 49 ~IcVigsQ~~qlq~dl~tLretfsNFssst~---aEvqaL~S--------------~G~sl~~kVtSLea~lEkqqQeLk 111 (138)
T PF03954_consen 49 VICVIGSQNSQLQRDLRTLRETFSNFSSSTL---AEVQALSS--------------QGGSLQDKVTSLEAKLEKQQQELK 111 (138)
T ss_pred HHHhhcCccHHHHHHHHHHHHHHhcccHHHH---HHHHHHHh--------------ccccHHhHcccHHHHHHHHHHHHh
Confidence 3444445566777777766666666644322 22222221 111377788888888888888887
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Q 001085 654 ADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFRRLSVQMA 703 (1160)
Q Consensus 654 ~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~~~LS~qms 703 (1160)
+|-..|. | -+.++=.|++.||.||+
T Consensus 112 AdhS~ll----------------l---------hvk~~~~DLr~LsCQma 136 (138)
T PF03954_consen 112 ADHSTLL----------------L---------HVKQFPKDLRSLSCQMA 136 (138)
T ss_pred hhHHHHH----------------H---------HHHHHHHHHhhhhhhhh
Confidence 7764432 1 24456678888899885
No 441
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=21.65 E-value=1.5e+02 Score=29.69 Aligned_cols=84 Identities=19% Similarity=0.304 Sum_probs=50.1
Q ss_pred eeeeccccc--cccceEEEEe--ecCCCCccccccccccccCccccCccchhhhhccccCCccccccceeEEEEe--cCC
Q 001085 22 FHATQVAQL--GENALMISVV--PLDVGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVS--TGL 95 (1160)
Q Consensus 22 FhATQVPq~--gwDkLfVSiV--p~DtGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVS--mGS 95 (1160)
.+|..+|.. |--..||.+. |.+ .+ .++-|+.|..++ .||+|.-. |.=+.....++++-..|.|. .+.
T Consensus 22 ~~a~nL~~~~~~~~d~yVkv~l~~~~-~~--~~~~kT~v~~~~---~nP~fnE~-F~f~i~~~~l~~~~L~~~V~~~~~~ 94 (137)
T cd08409 22 LRARGLRQLDHAHTSVYVKVSLMIHN-KV--VKTKKTEVVDGA---ASPSFNES-FSFKVTSRQLDTASLSLSVMQSGGV 94 (137)
T ss_pred EEecCCCcccCCCCCeEEEEEEEECC-EE--eeeeecccEeCC---CCCcccce-EEEECCHHHhCccEEEEEEEeCCCC
Confidence 456666654 2234466553 532 22 223355566665 57777543 22244456677777888886 356
Q ss_pred Ccccccceeecchhhhh
Q 001085 96 SKAGFVGEASIDFADYA 112 (1160)
Q Consensus 96 SKSgiLGEasINlAdYa 112 (1160)
++..+||++.|....|.
T Consensus 95 ~~~~~lG~v~ig~~~~~ 111 (137)
T cd08409 95 RKSKLLGRVVLGPFMYA 111 (137)
T ss_pred CCcceEEEEEECCcccC
Confidence 78999999999865553
No 442
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=21.62 E-value=1.5e+03 Score=27.54 Aligned_cols=41 Identities=29% Similarity=0.324 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhh
Q 001085 751 KLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDS 791 (1160)
Q Consensus 751 Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~ 791 (1160)
--++|.+||.+-..+....-.+-+..+.||++-++.-+...
T Consensus 147 EReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis 187 (561)
T KOG1103|consen 147 EREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQIS 187 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777666555544445555666665554444333
No 443
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=21.29 E-value=1.6e+02 Score=28.41 Aligned_cols=83 Identities=14% Similarity=0.273 Sum_probs=43.6
Q ss_pred eeeeccccccccc-----eEEEEeecCCCCccccccccccccCccccCccchhhhhccccCCccccccceeEEEEec--C
Q 001085 22 FHATQVAQLGENA-----LMISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVST--G 94 (1160)
Q Consensus 22 FhATQVPq~gwDk-----LfVSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVSm--G 94 (1160)
.+|..+|...+.. ..|.+.|.. +... |+.|..++ .+|+|.-.-.+. .....+..+..+|-|-- +
T Consensus 23 ~~a~~L~~~d~~~~~dpyv~v~l~~~~--~~~~---kT~v~~~t---~nP~wne~f~f~-i~~~~l~~~~l~~~V~d~d~ 93 (124)
T cd08385 23 IQAADLPAMDMGGTSDPYVKVYLLPDK--KKKF---ETKVHRKT---LNPVFNETFTFK-VPYSELGNKTLVFSVYDFDR 93 (124)
T ss_pred EEeeCCCCccCCCCCCCEEEEEEEcCC--CCce---ecccCcCC---CCCceeeeEEEe-CCHHHhCCCEEEEEEEeCCC
Confidence 5666777543332 224445533 1222 33344444 266664422222 11123344566776652 4
Q ss_pred CCcccccceeecchhhhhh
Q 001085 95 LSKAGFVGEASIDFADYAE 113 (1160)
Q Consensus 95 SSKSgiLGEasINlAdYae 113 (1160)
.++..+||+|.|++++...
T Consensus 94 ~~~~~~lG~~~i~l~~~~~ 112 (124)
T cd08385 94 FSKHDLIGEVRVPLLTVDL 112 (124)
T ss_pred CCCCceeEEEEEecCcccC
Confidence 4577899999999998644
No 444
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=21.20 E-value=5.5e+02 Score=27.73 Aligned_cols=106 Identities=14% Similarity=0.219 Sum_probs=57.6
Q ss_pred hhHHHHHHhhhHHHHHHHHhhhhcccccccCcccchHHhhhhhcCCCCCchHhHHHHHHHHhhccC--hhhHHHHHHHHH
Q 001085 408 SNAELILAVQDLDEMLEQKNREISNHSNKSGSYVNAKELRRNISKSQTDDDEDQKALEELVKEHRD--VKETYLLEQKIM 485 (1160)
Q Consensus 408 SN~ELvlaVqDLEEmLEQk~~EIs~Ls~~~~~~~n~~e~~~~l~~~etddde~q~~l~~l~ke~~d--~kE~~~L~~KI~ 485 (1160)
+-.--+++++-=|++||.+++++-+- +. ..+.+-+.....+.. +-+.+....| -+|++++|.||+
T Consensus 28 ~s~sals~f~AkEeeIErkKmeVrek---Vq---------~~LgrveEetkrLa~-ireeLE~l~dP~RkEv~~vRkkID 94 (159)
T PF04949_consen 28 MSRSALSAFRAKEEEIERKKMEVREK---VQ---------AQLGRVEEETKRLAE-IREELEVLADPMRKEVEMVRKKID 94 (159)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHH---HH---------HHHhHHHHHHHHHHH-HHHHHHhhccchHHHHHHHHHHHH
Confidence 33445788899999999999988651 10 011111111101110 1112222333 469999999999
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhH
Q 001085 486 DLYSEIEIYRRDKDELETQMEQLALDYEILKQENHDISYKL 526 (1160)
Q Consensus 486 eL~~ele~y~~~~~eLe~k~eqL~~dye~LkQEN~dis~KL 526 (1160)
-.+.+|.-...-...=+..+.+...-|....+|-..|..+|
T Consensus 95 ~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L 135 (159)
T PF04949_consen 95 SVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRL 135 (159)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988875544444444444443334555555555554443
No 445
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.18 E-value=2.8e+02 Score=24.80 Aligned_cols=53 Identities=28% Similarity=0.401 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhHHHHHHHhHHHHhHHHHHHHHHHhhhhhhhHHHHhccccccCCCchHHHHHHHHHhhhhhh
Q 001085 322 QIVKESKRAQDLSREVISLKEEKDLLKLDCEKLKTFQKRMDEAKVRNKLHFQGGDPWVLLEEIRQELSYEKD 393 (1160)
Q Consensus 322 Qi~kEsKrgqdLs~EVs~Lk~ERD~LK~E~EqLKs~~k~~~ea~~~~rl~~e~~D~~~~leELk~EL~~EKe 393 (1160)
.+..--..-++|..++..++.|.+.|+.+++.|+. |+..+-+.-|+.++|-+.
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~-------------------~~~~ie~~AR~~lgm~~~ 70 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLKN-------------------DPDYIEKVAREKLGMVKP 70 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------------CHHHHHHHHHHHcCCcCC
No 446
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=21.12 E-value=1.3e+03 Score=26.44 Aligned_cols=190 Identities=13% Similarity=0.288 Sum_probs=0.0
Q ss_pred CCchhhhhhHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhh----hhhhhHHHHHHHH--------------
Q 001085 549 EPETQVESLENELKIKSKDLSDSLAIINELETHIEGLASELKKQSREFS----NFQATIKELESQI-------------- 610 (1160)
Q Consensus 549 ~le~~iesle~elk~~~~e~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~----~~qst~e~L~eel-------------- 610 (1160)
||.+++ -|-..+.-=+.|-+||-+|+.-...|. .+...+..|-.+|
T Consensus 6 dprVq~----------------eLe~LN~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYyea~ 69 (239)
T PF05276_consen 6 DPRVQE----------------ELEKLNQATDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYEAR 69 (239)
T ss_pred ccHHHH----------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Q ss_pred ---HHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHH-HHHHhhH-----HHHHHhhHHHHHHHH--HHHHHHHH
Q 001085 611 ---EALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQA-QVYEADL-----EVVTRAKVEQEQRAI--QAEETLRK 679 (1160)
Q Consensus 611 ---q~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~~Qa-q~f~~dl-----~a~~~~k~eqE~rai--~aEeaLrk 679 (1160)
..++.+..+....|--+......-...|.-++..|.... ..|.... +++..-+.-..+|.. ..|...-+
T Consensus 70 ~~a~~aq~e~q~Aa~~yerA~~~h~aAKe~v~laEq~l~~~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~ 149 (239)
T PF05276_consen 70 RKAKEAQQEAQKAALQYERANSMHAAAKEMVALAEQSLMSDSNWTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRAR 149 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 001085 680 TRLKNANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQL 759 (1160)
Q Consensus 680 tR~~na~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL 759 (1160)
..-.....+..|++++++ +|.=+-=--..+......|... +. +|..|..++
T Consensus 150 ~~~~ae~~v~~Lek~lkr------------------~I~KSrPYfe~K~~~~~~l~~~-------k~----~v~~Le~~v 200 (239)
T PF05276_consen 150 IYNEAEQRVQQLEKKLKR------------------AIKKSRPYFELKAKFNQQLEEQ-------KE----KVEELEAKV 200 (239)
T ss_pred HHHHHHHHHHHHHHHHHH------------------HHHhhhHHHHHHHHHHHHHHHH-------HH----HHHHHHHHH
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHh
Q 001085 760 NVKTDQIEQMLKEINNLSNQLEEQ 783 (1160)
Q Consensus 760 ~~~~~~~e~m~~el~~~s~ql~~~ 783 (1160)
......----+..|+.-|++++..
T Consensus 201 ~~aK~~Y~~ALrnLE~ISeeIH~~ 224 (239)
T PF05276_consen 201 KQAKSRYSEALRNLEQISEEIHEQ 224 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 447
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=21.06 E-value=2e+02 Score=24.59 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=21.1
Q ss_pred ceeEEEEecCCCc--ccccceeecchhhhh
Q 001085 85 RIYNFIVSTGLSK--AGFVGEASIDFADYA 112 (1160)
Q Consensus 85 kiYKfVVSmGSSK--SgiLGEasINlAdYa 112 (1160)
.-.+|.|-...+. -.++|.+.+++.+..
T Consensus 61 ~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 61 DTLTVEVWDKDRFSKDDFLGEVEIPLSELL 90 (102)
T ss_pred CEEEEEEEecCCCCCCceeEEEEEeHHHhh
Confidence 3456777665554 589999999999988
No 448
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=21.03 E-value=1.7e+03 Score=27.93 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=23.4
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhH
Q 001085 695 FRRLSVQMASSFDANEKVAMKALAEASELRMQK 727 (1160)
Q Consensus 695 ~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~ 727 (1160)
...|..|+-+..+-|.++..+|..=+.-|+-++
T Consensus 167 ~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~ 199 (475)
T PRK10361 167 RHTLAHEIRNLQQLNAQMAQEAINLTRALKGDN 199 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344555555566678888888888888888765
No 449
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=20.91 E-value=1.3e+03 Score=26.71 Aligned_cols=75 Identities=24% Similarity=0.342 Sum_probs=51.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHH
Q 001085 596 FSNFQATIKELESQIEALGNELKEQSKGYSDSLATIK-ELEAYIKNLEEELEKQAQVYEADLEVVTRAKVEQEQRAI 671 (1160)
Q Consensus 596 f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~-~Le~qv~sl~eel~~Qaq~f~~dl~a~~~~k~eqE~rai 671 (1160)
..++.++-.+|+.++.+-..+|.+..+++. +|..|. ..-..+..|++||.++-+.|..=+.-+.....+.+.+..
T Consensus 185 l~~l~~de~~Le~KIekkk~ELER~qKRL~-sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~~~ 260 (267)
T PF10234_consen 185 LNNLASDEANLEAKIEKKKQELERNQKRLQ-SLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEYNR 260 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345566677777777777888887777654 344444 466677888888888888888777666666655555543
No 450
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=20.83 E-value=8.9e+02 Score=24.58 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q 001085 716 ALAEASELRMQKRHLEEMINKA 737 (1160)
Q Consensus 716 A~~E~seLr~~~~~LEe~L~~a 737 (1160)
-+.|-+.||+|+..|-..+-+-
T Consensus 3 la~eYsKLraQ~~vLKKaVieE 24 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEE 24 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3568889999997766555433
No 451
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=20.82 E-value=51 Score=34.28 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=31.1
Q ss_pred CcccccceeecchhhhhhhcCcceeeccccCCCC
Q 001085 96 SKAGFVGEASIDFADYAEASKTSTVSLPLKYSRS 129 (1160)
Q Consensus 96 SKSgiLGEasINlAdYaea~kp~tVSLPLK~cns 129 (1160)
.-.+++||+|--+|.-+......-|=|||..|+.
T Consensus 76 ~a~smlGEiTp~mA~AI~~S~A~KiLiPl~~~~~ 109 (131)
T PF12953_consen 76 IANSMLGEITPAMAEAIAQSPAKKILIPLNRCNI 109 (131)
T ss_pred ccCcccccccHHHHHHHhcCCCCEEEEeecCCCC
Confidence 3568999999999999999999999999999974
No 452
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=20.80 E-value=2.3e+03 Score=29.49 Aligned_cols=337 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhHhHHHHHHHHhhhhcccCCCCCCCCchhhhhhHHHH
Q 001085 482 QKIMDLYSEIEIYRRDKDELETQMEQLALDYEILKQENHDISYKLEQSQLQEQLKMQYECSSIGNGSEPETQVESLENEL 561 (1160)
Q Consensus 482 ~KI~eL~~ele~y~~~~~eLe~k~eqL~~dye~LkQEN~dis~KLEqsqlqe~l~~~~ecSs~~~~~~le~~iesle~el 561 (1160)
.++++.....+.|++..+..-.+..++....+.++++......++=..+|+.++...+.--+ .++.--+..
T Consensus 58 ~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~---------~~q~~l~~~ 128 (1109)
T PRK10929 58 EERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLL---------EKSRQAQQE 128 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHH---------HHHHHHHHH
Q ss_pred HhhhhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhh-----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHH
Q 001085 562 KIKSKDLSDSLAIINELETHIEGLASELKKQSREFS-----NFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEA 636 (1160)
Q Consensus 562 k~~~~e~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~-----~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~ 636 (1160)
-.+..+.++++.+.-.-.+..++.=.+.+.+....+ --.+..-.|.-|......++.....+....-....-+..
T Consensus 129 ~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~ 208 (1109)
T PRK10929 129 QDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLSANNRQELARL 208 (1109)
T ss_pred hhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH---HHHHHHhhhhhhhhhHHH
Q 001085 637 YIKNLEEELEKQAQVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAERLQEEF---RRLSVQMASSFDANEKVA 713 (1160)
Q Consensus 637 qv~sl~eel~~Qaq~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e~LqeE~---~~LS~qmsSt~eenE~~~ 713 (1160)
|..-+...+....+....=-+++...+.++-+.+++. ..+...+.+.....+++++ +.||..+
T Consensus 209 q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~---~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L----------- 274 (1109)
T PRK10929 209 RSELAKKRSQQLDAYLQALRNQLNSQRQREAERALES---TELLAEQSGDLPKSIVAQFKINRELSQAL----------- 274 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHhhccCChHHHHHHHHHHHHHHHH-----------
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhh----------------------HHHHHHHHHHHhhhhHHHHHHHH
Q 001085 714 MKALAEASELRMQKRHLEEMINKASEEALSLRDDY----------------------ETKLCQLSNQLNVKTDQIEQMLK 771 (1160)
Q Consensus 714 ~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~----------------------e~Ki~~L~~qL~~~~~~~e~m~~ 771 (1160)
.++-...+.+..++...+.-+..+...++.+++|- ..++++|.++++.-.-+.=++.+
T Consensus 275 ~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~~L~~Q~~~LP~~~~~~~l~~~IAdlRl~~f~~~q 354 (1109)
T PRK10929 275 NQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGEALRAQVARLPEMPKPQQLDTEMAQLRVQRLRYED 354 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHhhhhhhHhhhHHHHHHH-----HHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHH
Q 001085 772 EINNLSNQLEEQKKHDEEDSGALSLEIQ-----QLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQR 845 (1160)
Q Consensus 772 el~~~s~ql~~~~~~~~~~~~~~~~eiq-----~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~ 845 (1160)
.++...+ ..+........+..+-. .|+..-+=|..-+..+.-++..--+|..-..|+...+.+....+++
T Consensus 355 ~~~~l~~----i~~~~~~~~~~~t~~~~~~l~~ll~~rr~LL~~L~~~~~~~l~~l~~L~~~q~QL~~~~~~l~~~L~~ 429 (1109)
T PRK10929 355 LLNKQPQ----LRQIRQADGQPLTAEQNRILDAQLRTQRELLNSLLSGGDTLILELTKLKVANSQLEDALKEVNEATHR 429 (1109)
T ss_pred HHHHhhh----hHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 453
>PF13166 AAA_13: AAA domain
Probab=20.76 E-value=1.7e+03 Score=27.97 Aligned_cols=8 Identities=0% Similarity=-0.201 Sum_probs=4.0
Q ss_pred hhHHHhHH
Q 001085 625 SDSLATIK 632 (1160)
Q Consensus 625 S~~l~~i~ 632 (1160)
..|.-.-+
T Consensus 256 ~~CpfC~q 263 (712)
T PF13166_consen 256 DTCPFCQQ 263 (712)
T ss_pred CcCCCCCC
Confidence 44555544
No 454
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=20.76 E-value=1.1e+03 Score=25.77 Aligned_cols=66 Identities=17% Similarity=0.245 Sum_probs=43.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhh
Q 001085 871 VQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEKKLKD 943 (1160)
Q Consensus 871 l~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~~~ 943 (1160)
+..-...+++.|..|..|...|..|+.+..-++--.-..+ +.|.+|+.+...-.+.+.++|-++.+
T Consensus 119 ~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~-------~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 119 IEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKD-------KEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333556677888999999999988888777765444444 55666666666666666666655543
No 455
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=20.74 E-value=6.8e+02 Score=23.18 Aligned_cols=89 Identities=21% Similarity=0.322 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHH-----HHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhh
Q 001085 851 DELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLK-----SELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKG 925 (1160)
Q Consensus 851 ~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~-----se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~ 925 (1160)
+.....++.+..+.......|..+....++-...+.... .++.....-..-|......-..+-+.++++|...+.
T Consensus 1 d~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~ 80 (123)
T PF02050_consen 1 DQAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQARE 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhHHHHHHHHH
Q 001085 926 DLKKKEDALNSLEK 939 (1160)
Q Consensus 926 ~l~kke~~~~~~ek 939 (1160)
.|....-....+++
T Consensus 81 ~l~~a~~~~k~~e~ 94 (123)
T PF02050_consen 81 ELQEARRERKKLEK 94 (123)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
No 456
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=20.48 E-value=1.7e+02 Score=29.64 Aligned_cols=80 Identities=15% Similarity=0.176 Sum_probs=49.4
Q ss_pred eeeecccccc---ccceEE--EEeecCCCCccccccccccccCccccCccch-hhhhccccCCccccccceeEEEEec--
Q 001085 22 FHATQVAQLG---ENALMI--SVVPLDVGKPTVRLEKAAIEDGCCRWLNSVY-ETVKFVREPKSGKISERIYNFIVST-- 93 (1160)
Q Consensus 22 FhATQVPq~g---wDkLfV--SiVp~DtGKtTaKteKAaVrnG~C~W~dpIy-ETvkl~qD~kTkk~~EkiYKfVVSm-- 93 (1160)
.+|.++|... -.--|| .+.|. |+...| .|+.|..++ .||+| |+..| +.....+++....|.|--
T Consensus 22 i~A~nL~~~~~~g~~DpyVkv~l~~~--~~~~~k-~kT~v~k~t---~nP~~nE~f~F--~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 22 VKARNLVWDNGKTTADPFVKVYLLQD--GRKISK-KKTSVKRDD---TNPIFNEAMIF--SVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred EEeeCCCCccCCCCCCeEEEEEEEeC--Cccccc-cCCccccCC---CCCeeceeEEE--ECCHHHhCCcEEEEEEEeCC
Confidence 4566666532 223343 44553 443322 356666666 67887 44455 355556888889998884
Q ss_pred CCCcccccceeecchh
Q 001085 94 GLSKAGFVGEASIDFA 109 (1160)
Q Consensus 94 GSSKSgiLGEasINlA 109 (1160)
+.++..+||++.|-..
T Consensus 94 ~~~~~~~iG~v~lg~~ 109 (136)
T cd08406 94 EDGKTPNVGHVIIGPA 109 (136)
T ss_pred CCCCCCeeEEEEECCC
Confidence 5789999999998543
No 457
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=20.34 E-value=1.2e+03 Score=25.70 Aligned_cols=95 Identities=16% Similarity=0.201 Sum_probs=0.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 001085 702 MASSFDANEKVAMKALAEASELRMQK----RHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLS 777 (1160)
Q Consensus 702 msSt~eenE~~~~~A~~E~seLr~~~----~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s 777 (1160)
+..++++|...+.+.+.++.+.|.+- ...++.|.+|..+...+.++.+.........+ ..+...+.-..++.+.
T Consensus 73 i~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i--~~~A~~eae~ii~~A~ 150 (205)
T PRK06231 73 TQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKSEL--EKEANRQANLIIFQAR 150 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhh----hHhhhHHHHHH
Q 001085 778 NQLEEQKKHD----EEDSGALSLEI 798 (1160)
Q Consensus 778 ~ql~~~~~~~----~~~~~~~~~ei 798 (1160)
.+++..++.- ...+.+++.++
T Consensus 151 ~~Ie~Ek~~a~~~Lk~ei~~lAv~i 175 (205)
T PRK06231 151 QEIEKERRELKEQLQKESVELAMLA 175 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 458
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=20.33 E-value=1.5e+03 Score=26.96 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 001085 475 KETYLLEQKIMDLYSEIEIYRRDKDEL 501 (1160)
Q Consensus 475 kE~~~L~~KI~eL~~ele~y~~~~~eL 501 (1160)
.+.+.+.+|+..|-.|++.++.+....
T Consensus 87 ~e~Es~~~kl~RL~~Ev~EL~eEl~~~ 113 (388)
T PF04912_consen 87 SEKESPEQKLQRLRREVEELKEELEKR 113 (388)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888888887666655544
No 459
>PRK10780 periplasmic chaperone; Provisional
Probab=20.32 E-value=1e+03 Score=24.98 Aligned_cols=61 Identities=20% Similarity=0.311 Sum_probs=43.4
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 001085 594 REFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQAQVYEADL 656 (1160)
Q Consensus 594 ~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~~Qaq~f~~dl 656 (1160)
..|+..+.+++.+..+||+...+|++...-.|+.- ....+..+..+..++..+++.|..|+
T Consensus 50 ~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~--~~~~~~el~~~~~~~q~~~~~~qq~~ 110 (165)
T PRK10780 50 NEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSD--RTKLEKDVMAQRQTFSQKAQAFEQDR 110 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777888888888889888888888765555544 33455556666677777777777665
No 460
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=20.30 E-value=1.7e+03 Score=27.79 Aligned_cols=36 Identities=14% Similarity=0.398 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhh
Q 001085 749 ETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQK 784 (1160)
Q Consensus 749 e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~ 784 (1160)
+.++....+.|+.+...++.-...|+.+.++|....
T Consensus 75 e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke 110 (514)
T TIGR03319 75 RNELQRLERRLLQREETLDRKMESLDKKEENLEKKE 110 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666655555666555554433
No 461
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.22 E-value=1.4e+03 Score=29.08 Aligned_cols=100 Identities=15% Similarity=0.268 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh------hhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHH
Q 001085 571 SLAIINELETHIEGLASELKKQSR------EFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEE 644 (1160)
Q Consensus 571 Sl~~I~~Le~qi~~LE~Ele~Q~~------~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~ee 644 (1160)
....+.+++..++..+..|++-.. .+...+..++.|...=-+.-.++.+...++......++....++.++..+
T Consensus 162 T~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~ 241 (555)
T TIGR03545 162 TVETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKND 241 (555)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666777777766665443 33455555555555322334455555666666666777777788888888
Q ss_pred HHHHHHHHHhhHHHHHHhhHHHHHHH
Q 001085 645 LEKQAQVYEADLEVVTRAKVEQEQRA 670 (1160)
Q Consensus 645 l~~Qaq~f~~dl~a~~~~k~eqE~ra 670 (1160)
|...-..+..++.+|.++..+-=.|.
T Consensus 242 l~~~~~~~~~~~~~lk~ap~~D~~~L 267 (555)
T TIGR03545 242 LQNDKKQLKADLAELKKAPQNDLKRL 267 (555)
T ss_pred HHHhHHHHHHHHHHHHhccHhHHHHH
Confidence 88877778888888777776554444
Done!