Query 001085
Match_columns 1160
No_of_seqs 76 out of 78
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 10:16:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001085.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001085hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 98.1 3.4E-06 1.2E-10 106.1 9.5 21 305-325 383-403 (1184)
2 1c1g_A Tropomyosin; contractIl 98.1 0.0096 3.3E-07 59.5 39.5 59 883-941 223-281 (284)
3 1i84_S Smooth muscle myosin he 98.1 2.9E-05 1E-09 97.8 16.0 52 974-1025 1112-1166(1184)
4 1c1g_A Tropomyosin; contractIl 98.0 0.014 4.9E-07 58.2 39.0 22 885-906 260-281 (284)
5 3na7_A HP0958; flagellar bioge 96.7 0.22 7.7E-06 53.0 22.2 171 773-948 16-192 (256)
6 2dfs_A Myosin-5A; myosin-V, in 96.1 0.31 1.1E-05 61.7 22.3 66 841-909 984-1049(1080)
7 3na7_A HP0958; flagellar bioge 95.8 0.61 2.1E-05 49.7 20.0 124 751-910 54-177 (256)
8 3vkg_A Dynein heavy chain, cyt 95.3 1.3 4.3E-05 61.9 24.7 159 610-783 1908-2075(3245)
9 3oja_B Anopheles plasmodium-re 95.1 0.13 4.5E-06 59.3 12.7 77 851-927 505-581 (597)
10 2dfs_A Myosin-5A; myosin-V, in 94.6 0.43 1.5E-05 60.5 16.3 73 575-650 979-1051(1080)
11 3vkg_A Dynein heavy chain, cyt 93.8 7.9 0.00027 54.4 26.8 131 733-874 1928-2061(3245)
12 2v71_A Nuclear distribution pr 93.6 2.8 9.7E-05 43.8 17.4 17 719-735 32-48 (189)
13 2v71_A Nuclear distribution pr 90.8 18 0.0006 37.9 19.7 95 574-668 11-109 (189)
14 3ghg_A Fibrinogen alpha chain; 85.1 8.6 0.0003 45.5 13.8 61 570-630 106-167 (562)
15 3oja_A Leucine-rich immune mol 83.8 11 0.00039 42.6 14.0 34 823-856 452-485 (487)
16 3ol1_A Vimentin; structural ge 80.7 23 0.00079 34.1 12.9 63 792-864 16-78 (119)
17 3u1c_A Tropomyosin alpha-1 cha 79.7 22 0.00075 33.4 12.0 79 716-802 21-99 (101)
18 3u59_A Tropomyosin beta chain; 79.5 19 0.00065 33.7 11.5 80 715-802 20-99 (101)
19 3i00_A HIP-I, huntingtin-inter 78.6 3.1 0.00011 40.6 6.1 52 877-931 9-60 (120)
20 3tnu_B Keratin, type II cytosk 77.4 30 0.001 33.5 12.6 91 552-653 15-106 (129)
21 2fxo_A Myosin heavy chain, car 76.8 57 0.0019 31.6 15.5 51 871-928 71-121 (129)
22 2e7s_A RAB guanine nucleotide 76.5 18 0.00062 36.2 10.8 94 849-942 33-127 (135)
23 2eqb_B RAB guanine nucleotide 75.6 41 0.0014 32.0 12.4 86 846-931 10-96 (97)
24 4gkw_A Spindle assembly abnorm 75.4 71 0.0024 32.0 18.3 24 719-742 61-84 (167)
25 2ocy_A RAB guanine nucleotide 75.1 77 0.0026 32.3 18.5 56 688-746 81-136 (154)
26 1gk4_A Vimentin; intermediate 74.5 15 0.00053 33.3 9.1 59 719-777 2-60 (84)
27 1l8d_A DNA double-strand break 74.1 45 0.0016 30.9 12.5 41 881-921 62-102 (112)
28 1f5n_A Interferon-induced guan 74.1 1.6E+02 0.0053 35.4 23.8 101 706-811 482-582 (592)
29 3tnu_A Keratin, type I cytoske 72.2 25 0.00087 34.1 10.6 59 719-777 53-111 (131)
30 2ocy_A RAB guanine nucleotide 71.8 92 0.0031 31.8 16.8 94 850-943 46-140 (154)
31 2fxo_A Myosin heavy chain, car 70.2 82 0.0028 30.5 15.6 22 883-904 97-118 (129)
32 1ugk_A Synaptotagmin IV, KIAA1 69.8 18 0.00061 33.7 8.8 101 21-128 28-135 (138)
33 3o0z_A RHO-associated protein 69.3 1.1E+02 0.0037 31.6 17.4 96 832-927 32-134 (168)
34 1wfj_A Putative elicitor-respo 69.3 7.9 0.00027 35.9 6.2 113 17-142 11-131 (136)
35 3pyc_A E3 ubiquitin-protein li 68.6 21 0.00071 33.0 8.9 52 87-138 68-130 (132)
36 2v66_B Nuclear distribution pr 67.6 29 0.001 33.6 9.7 78 328-424 3-87 (111)
37 3ghg_A Fibrinogen alpha chain; 66.5 58 0.002 38.8 13.6 77 848-924 109-189 (562)
38 2jee_A YIIU; FTSZ, septum, coi 66.4 22 0.00075 32.9 8.2 59 883-941 20-78 (81)
39 3ol1_A Vimentin; structural ge 65.1 1E+02 0.0035 29.7 14.1 42 744-785 14-55 (119)
40 3b7y_A E3 ubiquitin-protein li 64.6 28 0.00097 32.9 9.1 118 14-140 18-152 (153)
41 3swk_A Vimentin; cytoskeleton, 63.2 47 0.0016 30.5 9.9 36 611-646 45-80 (86)
42 1m1j_B Fibrinogen beta chain; 62.9 71 0.0024 37.5 13.6 63 751-813 122-185 (464)
43 2eqb_B RAB guanine nucleotide 62.1 1.1E+02 0.0038 29.1 14.2 46 689-737 50-95 (97)
44 3s4r_A Vimentin; alpha-helix, 61.3 36 0.0012 31.7 8.9 65 719-783 24-89 (93)
45 3hnw_A Uncharacterized protein 59.9 45 0.0015 33.1 9.8 23 883-905 89-111 (138)
46 2b9c_A Striated-muscle alpha t 59.8 81 0.0028 31.6 11.7 92 892-1019 54-145 (147)
47 1rlw_A Phospholipase A2, CALB 59.6 30 0.001 31.5 8.0 107 21-139 9-123 (126)
48 3hnw_A Uncharacterized protein 58.3 54 0.0019 32.5 10.1 72 866-944 65-136 (138)
49 3o0z_A RHO-associated protein 58.3 1.7E+02 0.006 30.2 19.9 56 728-784 9-64 (168)
50 3u1c_A Tropomyosin alpha-1 cha 58.1 1.2E+02 0.0042 28.4 13.3 61 835-895 31-91 (101)
51 3tnu_B Keratin, type II cytosk 58.0 1.1E+02 0.0037 29.6 11.9 103 746-879 11-113 (129)
52 3fbk_A RGS3, RGP3, regulator o 57.8 28 0.00097 33.2 7.9 52 87-138 95-149 (153)
53 2d8k_A Synaptotagmin VII; exoc 57.3 13 0.00046 34.7 5.4 103 22-131 33-140 (141)
54 3swk_A Vimentin; cytoskeleton, 56.9 53 0.0018 30.2 9.0 59 752-810 2-63 (86)
55 2ep6_A MCTP2 protein; beta san 56.6 35 0.0012 31.6 8.0 104 21-140 19-131 (133)
56 2e7s_A RAB guanine nucleotide 54.8 35 0.0012 34.1 8.0 55 689-746 70-124 (135)
57 3mq7_A Bone marrow stromal ant 54.7 1E+02 0.0035 30.3 10.9 70 667-750 31-103 (121)
58 1x8y_A Lamin A/C; structural p 54.6 21 0.00073 32.6 6.0 57 718-774 3-59 (86)
59 2dmh_A Myoferlin; beta-sandwic 53.3 44 0.0015 31.0 8.2 58 84-141 69-133 (140)
60 2v4h_A NF-kappa-B essential mo 53.2 1.5E+02 0.0052 28.8 11.7 22 838-859 35-56 (110)
61 3tnu_A Keratin, type I cytoske 53.1 96 0.0033 30.1 10.7 103 746-879 13-115 (131)
62 2efr_A General control protein 50.5 2.2E+02 0.0075 29.0 22.3 31 646-676 69-99 (155)
63 3i00_A HIP-I, huntingtin-inter 50.2 1E+02 0.0036 30.1 10.4 50 685-741 14-63 (120)
64 3oja_A Leucine-rich immune mol 48.8 2.5E+02 0.0087 31.7 14.9 11 533-543 340-350 (487)
65 2b3r_A Phosphatidylinositol-4- 48.2 21 0.0007 33.6 5.1 102 21-130 26-134 (134)
66 2a01_A Apolipoprotein A-I; fou 47.9 55 0.0019 34.7 8.8 31 554-584 145-176 (243)
67 1gk4_A Vimentin; intermediate 47.7 1.2E+02 0.004 27.6 9.7 66 573-641 8-73 (84)
68 3s4r_A Vimentin; alpha-helix, 46.5 1.5E+02 0.005 27.6 10.3 67 762-833 24-90 (93)
69 2q12_A DIP13 alpha, DCC-intera 45.7 2.9E+02 0.0098 28.9 27.9 170 572-746 20-213 (265)
70 3m7f_B E3 ubiquitin-protein li 45.3 46 0.0016 32.5 7.2 58 85-142 74-142 (176)
71 3u59_A Tropomyosin beta chain; 45.0 1.9E+02 0.0067 26.8 13.3 61 835-895 31-91 (101)
72 1go4_E MAD1 (mitotic arrest de 44.6 38 0.0013 32.4 6.1 33 475-507 12-44 (100)
73 1ik9_A DNA repair protein XRCC 43.8 2E+02 0.007 30.3 12.2 80 571-656 130-209 (213)
74 1ic2_A Tropomyosin alpha chain 43.5 1.4E+02 0.0047 26.8 9.4 68 750-821 6-73 (81)
75 3pdy_A Plectin; cytoskeleton, 43.1 2.8E+02 0.0095 28.1 15.4 134 463-609 39-174 (210)
76 3mov_A Lamin-B1; LMNB1, B-type 43.1 37 0.0013 31.9 5.8 62 576-640 22-83 (95)
77 3a7p_A Autophagy protein 16; c 42.6 1.7E+02 0.0056 30.0 10.7 65 856-920 69-133 (152)
78 2i1j_A Moesin; FERM, coiled-co 42.3 43 0.0015 39.8 7.7 117 605-743 339-458 (575)
79 3jzy_A Intersectin 2; C2 domai 40.8 55 0.0019 36.9 7.9 53 85-138 448-505 (510)
80 3a7p_A Autophagy protein 16; c 40.8 77 0.0026 32.3 8.0 102 841-944 28-136 (152)
81 2v66_B Nuclear distribution pr 40.6 2.6E+02 0.009 27.1 13.2 48 574-621 4-51 (111)
82 1v27_A Regulating synaptic mem 40.5 1.2E+02 0.0042 27.8 9.0 103 21-131 27-138 (141)
83 2chd_A Rabphilin-3A, exophilin 40.2 57 0.0019 30.4 6.7 100 21-126 35-140 (142)
84 1ic2_A Tropomyosin alpha chain 39.0 1.6E+02 0.0056 26.4 9.2 55 717-775 19-73 (81)
85 2jee_A YIIU; FTSZ, septum, coi 39.0 1.6E+02 0.0056 27.2 9.2 62 707-772 9-77 (81)
86 1deq_A Fibrinogen (alpha chain 38.9 3.6E+02 0.012 31.1 13.8 53 847-899 112-164 (390)
87 3r6n_A Desmoplakin; spectrin r 38.5 5.2E+02 0.018 29.9 21.1 83 566-648 119-225 (450)
88 2w83_C C-JUN-amino-terminal ki 37.2 1.2E+02 0.004 28.0 7.8 70 860-929 7-76 (77)
89 2q13_A DCC-interacting protein 36.8 4.6E+02 0.016 28.8 26.7 109 571-679 19-146 (385)
90 1gmi_A Protein kinase C, epsil 36.5 45 0.0015 31.1 5.3 55 85-142 77-134 (136)
91 2nq3_A Itchy homolog E3 ubiqui 36.3 51 0.0018 32.7 6.0 59 84-142 94-162 (173)
92 3kwu_A MUNC13-1; calcium bindi 35.8 97 0.0033 29.0 7.6 40 96-139 101-145 (148)
93 3mov_A Lamin-B1; LMNB1, B-type 35.6 60 0.0021 30.4 5.9 57 719-775 13-69 (95)
94 1dqv_A Synaptotagmin III; beta 35.5 1.2E+02 0.0042 32.0 9.1 111 21-140 26-148 (296)
95 1x8y_A Lamin A/C; structural p 35.2 1.2E+02 0.004 27.8 7.7 64 577-643 14-77 (86)
96 3csx_A Putative uncharacterize 34.9 51 0.0018 30.5 5.2 64 292-355 14-77 (81)
97 1x79_B RAB GTPase binding effe 34.1 3.4E+02 0.012 26.4 12.0 84 719-816 21-104 (112)
98 1go4_E MAD1 (mitotic arrest de 33.9 1.1E+02 0.0037 29.3 7.3 68 294-361 13-94 (100)
99 3bas_A Myosin heavy chain, str 33.6 1.8E+02 0.0061 26.7 8.7 50 466-515 5-54 (89)
100 2fk9_A Protein kinase C, ETA t 32.8 43 0.0015 33.3 4.8 51 86-139 100-155 (157)
101 1rh8_A Piccolo protein; beta-s 31.5 39 0.0013 31.4 4.1 46 83-129 94-141 (142)
102 1ci6_A Transcription factor AT 31.3 82 0.0028 27.3 5.7 37 481-517 22-58 (63)
103 1a93_B MAX protein, coiled coi 30.9 49 0.0017 26.3 3.7 29 480-508 5-33 (34)
104 3kbt_A Beta-I spectrin, spectr 30.5 4.9E+02 0.017 27.2 24.1 43 566-608 136-179 (326)
105 3m9b_A Proteasome-associated A 29.7 64 0.0022 35.2 5.8 45 313-357 53-97 (251)
106 3s9g_A Protein hexim1; cyclin 29.6 1.5E+02 0.0052 28.4 7.5 29 791-819 60-88 (104)
107 3q8t_A Beclin-1; autophagy, AT 29.6 3.5E+02 0.012 25.2 11.5 47 851-897 7-53 (96)
108 3mq9_A Bone marrow stromal ant 29.2 3.4E+02 0.012 30.5 11.9 80 574-654 374-468 (471)
109 3swf_A CGMP-gated cation chann 29.2 1.5E+02 0.0052 27.0 7.2 49 576-641 3-51 (74)
110 3s9g_A Protein hexim1; cyclin 29.1 1.8E+02 0.0062 27.9 7.9 58 847-904 29-86 (104)
111 2z0u_A WW domain-containing pr 29.0 49 0.0017 32.2 4.4 44 81-124 108-153 (155)
112 1a25_A CALB, protein kinase C 28.8 74 0.0025 30.0 5.5 46 85-132 98-145 (149)
113 2v4h_A NF-kappa-B essential mo 28.4 3.9E+02 0.013 26.1 10.2 18 855-872 62-79 (110)
114 2yy0_A C-MYC-binding protein; 28.4 71 0.0024 27.2 4.6 34 290-323 16-49 (53)
115 2js5_A Uncharacterized protein 28.0 87 0.003 28.4 5.4 61 294-354 4-64 (71)
116 1f5n_A Interferon-induced guan 27.8 8.6E+02 0.029 29.2 27.4 65 766-830 433-504 (592)
117 1m1j_B Fibrinogen beta chain; 27.3 7.7E+02 0.026 29.0 14.5 15 885-899 184-198 (464)
118 3rdl_A Protein kinase C alpha 27.0 83 0.0028 28.8 5.4 49 85-135 83-133 (137)
119 3he5_B Synzip2; heterodimeric 26.2 1.1E+02 0.0036 25.6 5.1 18 972-989 32-49 (52)
120 1wfm_A Synaptotagmin XIII; C2 26.1 1.2E+02 0.004 28.4 6.3 47 80-127 85-133 (138)
121 1l8d_A DNA double-strand break 25.9 3.9E+02 0.013 24.5 9.9 32 478-509 6-37 (112)
122 2r83_A Synaptotagmin-1; C2A-C2 25.7 2.3E+02 0.0078 29.3 9.0 58 81-140 81-146 (284)
123 3f04_A Synaptotagmin-1; C2A, c 24.8 94 0.0032 28.9 5.4 43 82-125 97-141 (143)
124 2enp_A B/K protein; C2 type 1, 24.6 2.1E+02 0.0073 26.7 7.9 46 81-127 95-142 (147)
125 2lf0_A Uncharacterized protein 24.1 91 0.0031 30.7 5.1 35 784-818 31-66 (123)
126 2bwq_A Regulating synaptic mem 24.0 2.3E+02 0.0078 25.6 7.7 87 21-113 24-119 (129)
127 2yy0_A C-MYC-binding protein; 23.7 62 0.0021 27.5 3.5 32 789-820 19-50 (53)
128 3nmd_A CGMP dependent protein 23.6 1.7E+02 0.0059 26.6 6.4 25 836-860 21-45 (72)
129 2p9r_A Alpha-2-M, alpha-2-macr 23.5 1.4E+02 0.0049 26.8 6.2 85 12-112 15-100 (102)
130 3nmd_A CGMP dependent protein 23.4 2E+02 0.0067 26.2 6.7 43 728-774 22-64 (72)
131 2zqm_A Prefoldin beta subunit 23.2 2.3E+02 0.0078 26.1 7.6 80 582-661 1-112 (117)
132 3q8t_A Beclin-1; autophagy, AT 22.7 4.7E+02 0.016 24.4 12.7 22 798-819 6-27 (96)
133 3swy_A Cyclic nucleotide-gated 22.4 1.6E+02 0.0054 24.7 5.5 37 577-620 2-38 (46)
134 3fdw_A Synaptotagmin-like prot 21.7 2.3E+02 0.008 26.5 7.5 46 80-126 87-134 (148)
135 1t2k_D Cyclic-AMP-dependent tr 21.6 1.6E+02 0.0055 25.0 5.7 34 482-515 22-55 (61)
136 1ses_A Seryl-tRNA synthetase; 21.5 2.9E+02 0.0099 31.6 9.5 60 885-944 37-97 (421)
137 2wt7_B Transcription factor MA 21.1 1.1E+02 0.0037 28.8 4.8 65 289-354 17-88 (90)
138 1gd2_E Transcription factor PA 20.7 1.2E+02 0.0041 27.2 4.8 20 794-813 48-67 (70)
139 2no2_A HIP-I, huntingtin-inter 20.7 5.6E+02 0.019 24.4 10.1 92 395-522 10-101 (107)
140 3fx7_A Putative uncharacterize 20.3 3.2E+02 0.011 25.9 7.8 52 874-928 11-62 (94)
141 2nrj_A HBL B protein; enteroto 20.3 7.5E+02 0.025 27.6 12.3 149 844-1020 119-267 (346)
142 1jnm_A Proto-oncogene C-JUN; B 20.1 1.2E+02 0.004 26.0 4.5 35 481-515 21-55 (62)
143 1x79_B RAB GTPase binding effe 20.0 6.1E+02 0.021 24.7 11.9 91 723-817 4-98 (112)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.14 E-value=3.4e-06 Score=106.10 Aligned_cols=21 Identities=10% Similarity=0.297 Sum_probs=12.7
Q ss_pred HHHhhhhhhHHHHHHHHHHHH
Q 001085 305 LARQADLSELELQTLRKQIVK 325 (1160)
Q Consensus 305 L~Rqad~s~lELQtLRKQi~k 325 (1160)
+..-+.+++.+...|.+-|..
T Consensus 383 ~~~~a~lLg~~~~~l~~~l~~ 403 (1184)
T 1i84_S 383 AQKVCHLMGINVTDFTRSILT 403 (1184)
T ss_dssp HHHHHHHTTSCHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHhcC
Confidence 445556666666666666653
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.12 E-value=0.0096 Score=59.48 Aligned_cols=59 Identities=12% Similarity=0.216 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhh
Q 001085 883 AAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEKKL 941 (1160)
Q Consensus 883 ~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~ 941 (1160)
..+..+..++..+..++..+...+..-..+...++.++..++..+.+-+..+..+..+|
T Consensus 223 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 281 (284)
T 1c1g_A 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444444455555555555555444444444443
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.07 E-value=2.9e-05 Score=97.80 Aligned_cols=52 Identities=27% Similarity=0.405 Sum_probs=0.0
Q ss_pred HhHHHHHHHhhhhhhhHHHHHhhcch--hhHHH-hhhhhhHHHHHHHHHHhhhcc
Q 001085 974 ANLRERIKLLEGQIKSKEIALEASTN--SFVEK-EKDLKNKIEELECRVEELNQN 1025 (1160)
Q Consensus 974 a~l~~~ik~~e~~ik~~~~a~~~s~~--~~~~k-e~~l~~~i~e~~~~~~e~n~~ 1025 (1160)
+.+..+|+.++.+|...+..++.-.. ..+++ -.+|+..+++|..+++++...
T Consensus 1112 ~~le~~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ieel~~v 1166 (1184)
T 1i84_S 1112 NNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDT 1166 (1184)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34444444444444443333332211 12233 357888888898888887664
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.04 E-value=0.014 Score=58.23 Aligned_cols=22 Identities=5% Similarity=0.022 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhHHHHhhh
Q 001085 885 VELLKSELELLKVQCHNLKQAL 906 (1160)
Q Consensus 885 ~~~l~se~~~l~~q~~~lk~~l 906 (1160)
+..+...+..++.+.+.+...|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~L 281 (284)
T 1c1g_A 260 LYAQKLKYKAISEELDHALNDM 281 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555544444
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.67 E-value=0.22 Score=53.00 Aligned_cols=171 Identities=13% Similarity=0.140 Sum_probs=93.3
Q ss_pred HHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHH--hhhhh
Q 001085 773 INNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQR--ANRER 850 (1160)
Q Consensus 773 l~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~--~~~e~ 850 (1160)
++...+++....+.-...+.++..++..++..+..+..+...+-.++...+. +++..+..+..+...+.. .+.+.
T Consensus 16 lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~---~i~~~~~ri~~~~~~l~~v~~~kE~ 92 (256)
T 3na7_A 16 LDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQ---TLQDTNAKIASIQKKMSEIKSEREL 92 (256)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCSSSSHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHccCCHHHH
Confidence 3333333333333333444444445555555555555444444444333333 444444555555544443 34667
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHH----HHHHHHHHHhhhh
Q 001085 851 DELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEK----EKLRKQAFQLKGD 926 (1160)
Q Consensus 851 ~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~ek----e~l~kqv~~lk~~ 926 (1160)
..|..+|..+++.....-+++..+..--++.+..+..++..+..++.....++..+...-.+. ..+.++...|.+.
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~ 172 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEK 172 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777788888887777777777777777777777777777777777777777776665544333 3333333333333
Q ss_pred hhhhHHHHHHHHHhhhhccccC
Q 001085 927 LKKKEDALNSLEKKLKDSNRRA 948 (1160)
Q Consensus 927 l~kke~~~~~~ek~~~~s~~~~ 948 (1160)
+- .+-+...++-.+..+|-+
T Consensus 173 i~--~~lL~~Yerir~~~~g~a 192 (256)
T 3na7_A 173 TE--PKIYSFYERIRRWAKNTS 192 (256)
T ss_dssp SC--HHHHHHHHHHHHHHGGGS
T ss_pred CC--HHHHHHHHHHHHhCCCce
Confidence 31 244455544444345553
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.11 E-value=0.31 Score=61.72 Aligned_cols=66 Identities=20% Similarity=0.230 Sum_probs=39.1
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhh
Q 001085 841 LLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVED 909 (1160)
Q Consensus 841 ~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~ 909 (1160)
..+.....+.++|...+..+.+|-+...+.+..++ ++-+..+..|..|...|+.|.++|..-+.+.
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555544444443 4555777788888888888888877544444
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.82 E-value=0.61 Score=49.66 Aligned_cols=124 Identities=18% Similarity=0.220 Sum_probs=72.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHH
Q 001085 751 KLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELA 830 (1160)
Q Consensus 751 Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~ 830 (1160)
.+..+..++......++.....+.....++.+.+ ......++..+|..++.++..+..+...++++++.... .++
T Consensus 54 ~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~--~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~---~l~ 128 (256)
T 3na7_A 54 EKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK--SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSE---KQE 128 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 3333444444444455555555555555554444 33446889999999999999888888888887655433 222
Q ss_pred HhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhh
Q 001085 831 QMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDE 910 (1160)
Q Consensus 831 ~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e 910 (1160)
.++ .....+.. .+...+.+-+..+..+..++..|..+-..|...+..+=
T Consensus 129 ~~~--------------~~l~~~~~-----------------~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~~l 177 (256)
T 3na7_A 129 DLK--------------KEMLELEK-----------------LALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKI 177 (256)
T ss_dssp HHH--------------HHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHH--------------HHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 111 11111111 12223345556777777888888888888877776543
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.30 E-value=1.3 Score=61.91 Aligned_cols=159 Identities=20% Similarity=0.268 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 001085 610 IEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQAQVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKNANTAE 689 (1160)
Q Consensus 610 lq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~~Qaq~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~na~~~e 689 (1160)
+.+-..++..+...|..-|..+.+...+|..|.++|..+...++ ++...|+++|.++-.... .|+
T Consensus 1908 l~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~--------------~k~~ea~~~l~~i~~~~~-~ae 1972 (3245)
T 3vkg_A 1908 INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELD--------------VKNEQANQKLKQMVQDQQ-AAE 1972 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH-HHH
Confidence 45555677778888888999999999999999888887664332 222233333333332221 122
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH------HHHHHhHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHh
Q 001085 690 RLQEEFRRLSVQMASSFDANEKVAMKALAEA------SELRMQKRHLEEMINKASEEALSLRDD---YETKLCQLSNQLN 760 (1160)
Q Consensus 690 ~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~------seLr~~~~~LEe~L~~a~~el~~~~~~---~e~Ki~~L~~qL~ 760 (1160)
.-+.++.....++...-.+=.....+|..+. .=+|...+.+|+.|..+.++|...+++ -+.||..|..+.+
T Consensus 1973 ~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~ 2052 (3245)
T 3vkg_A 1973 IKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYA 2052 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222111000011111111111 235666666777777776666655441 1124444444444
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHh
Q 001085 761 VKTDQIEQMLKEINNLSNQLEEQ 783 (1160)
Q Consensus 761 ~~~~~~e~m~~el~~~s~ql~~~ 783 (1160)
..+.+.+.+..+++.....|..+
T Consensus 2053 ~~~~ek~~L~~e~~~~~~kl~rA 2075 (3245)
T 3vkg_A 2053 TLIRETEQIKTESSKVKNKVDRS 2075 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544444444444333
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.09 E-value=0.13 Score=59.29 Aligned_cols=77 Identities=23% Similarity=0.208 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Q 001085 851 DELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDL 927 (1160)
Q Consensus 851 ~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l 927 (1160)
..+..++..++...+....++++.+..-+++...+..++.+++.++.++.+.|..+.+-..|..++++++.+|..++
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566666666666666666666666666666666777777777766666665555555555555544444443
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.57 E-value=0.43 Score=60.51 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHH
Q 001085 575 INELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQAQ 650 (1160)
Q Consensus 575 I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~~Qaq 650 (1160)
...++.+|..|++|++.....+.++..+.+.|++..+.++.+|... -+..-.....|+.|+..|+..+..+++
T Consensus 979 ~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~k---v~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 979 AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQL---VSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555554555555555555555555554444311 111111222455555555555554443
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.78 E-value=7.9 Score=54.38 Aligned_cols=131 Identities=26% Similarity=0.295 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHh---hhHHHHHHHHHHHhhhhhh
Q 001085 733 MINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEED---SGALSLEIQQLKADTEKLM 809 (1160)
Q Consensus 733 ~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~---~~~~~~eiq~l~~~~~~l~ 809 (1160)
.|..|.+++..|+. ++..+.-+|..++++.+.|+.++...+.+.+..++.-++. ...-..+|+..+++.+
T Consensus 1928 KL~et~~~V~~l~~----~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e--- 2000 (3245)
T 3vkg_A 1928 KLRDTEAQVKDLQV----SLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAY--- 2000 (3245)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 45557777777777 7888888888999999999999888877776655432222 2333344444444433
Q ss_pred hhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHH
Q 001085 810 MDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQRI 874 (1160)
Q Consensus 810 ~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~ 874 (1160)
..| .+++..+=+|.+|+.+......+...|.....+..+++.+++.++++-+....|-..+
T Consensus 2001 ---~dL-~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L 2061 (3245)
T 3vkg_A 2001 ---ADL-EKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQI 2061 (3245)
T ss_dssp ---HCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHH-hhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 2244446667788888888888888888888888888888887777666655554444
No 12
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.63 E-value=2.8 Score=43.78 Aligned_cols=17 Identities=29% Similarity=0.394 Sum_probs=7.0
Q ss_pred HHHHHHHhHHHHHHHHH
Q 001085 719 EASELRMQKRHLEEMIN 735 (1160)
Q Consensus 719 E~seLr~~~~~LEe~L~ 735 (1160)
|..+...--+.||+.|.
T Consensus 32 El~EFqesSrELE~ELE 48 (189)
T 2v71_A 32 ELVEFQEGSRELEAELE 48 (189)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 13
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=90.84 E-value=18 Score=37.94 Aligned_cols=95 Identities=18% Similarity=0.196 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHH----HHHHHHHHHHHHHHHHH
Q 001085 574 IINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIK----ELEAYIKNLEEELEKQA 649 (1160)
Q Consensus 574 ~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~----~Le~qv~sl~eel~~Qa 649 (1160)
-|.+.+.....+...+..=..+|-.||.-..+|+.+|.+-...+.++....-.-+.++. .+..++.....+..++.
T Consensus 11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~ 90 (189)
T 2v71_A 11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQV 90 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555677788888888888877766666666554444444443 24455555556666666
Q ss_pred HHHHhhHHHHHHhhHHHHH
Q 001085 650 QVYEADLEVVTRAKVEQEQ 668 (1160)
Q Consensus 650 q~f~~dl~a~~~~k~eqE~ 668 (1160)
-.+..++..+...+...-.
T Consensus 91 ~~Lq~el~~l~~~~~~l~~ 109 (189)
T 2v71_A 91 SVLEDDLSQTRAIKEQLHK 109 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666555544443333
No 14
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=85.05 E-value=8.6 Score=45.50 Aligned_cols=61 Identities=11% Similarity=0.231 Sum_probs=51.5
Q ss_pred hhHHHHH-HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHh
Q 001085 570 DSLAIIN-ELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLAT 630 (1160)
Q Consensus 570 dSl~~I~-~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~ 630 (1160)
+..+-|. +|+.+|..|+.++..|......||+.|+.+-.++|+++-++--|.......|.+
T Consensus 106 NtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr 167 (562)
T 3ghg_A 106 NTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSR 167 (562)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 3445555 899999999999999999999999999999999999999998886655555544
No 15
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.76 E-value=11 Score=42.61 Aligned_cols=34 Identities=12% Similarity=0.075 Sum_probs=21.5
Q ss_pred HhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHH
Q 001085 823 ESLRVELAQMKTTVKEYELLIQRANRERDELEST 856 (1160)
Q Consensus 823 e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~ 856 (1160)
+.++.++..+...+.++.+-+++..+...-|.+.
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (487)
T 3oja_A 452 ARLKKLNGEADLALASANATLQELVVREQNLASQ 485 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHh
Confidence 3344455556666777777788777776655543
No 16
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=80.72 E-value=23 Score=34.11 Aligned_cols=63 Identities=17% Similarity=0.369 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 001085 792 GALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEA 864 (1160)
Q Consensus 792 ~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~ea 864 (1160)
..|..+|..|++.|..+..++..|.-++ .+++..++..|... ......|..++..|..+||.+
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~lel---dn~~~~~edfk~Ky-------E~E~~~r~~~E~di~~lrK~l 78 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVER---DNLAEDIMRLREKL-------QEEMLQREEAENTLQSFRQDV 78 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHhhhcc
Confidence 5677788888888888888888776654 45555555555332 233345667777777777765
No 17
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=79.70 E-value=22 Score=33.43 Aligned_cols=79 Identities=15% Similarity=0.209 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHH
Q 001085 716 ALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALS 795 (1160)
Q Consensus 716 A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~ 795 (1160)
|+..+..+..+.+.++....++.+++.+++. ||+.|.+.|+.-..........|+..-+.. ..-+.-..+|.
T Consensus 21 a~drae~~e~~~k~~e~~~~~~E~Ei~sL~k----k~~~lE~eld~~ee~L~ea~~kLee~ek~~----~~aE~ev~~L~ 92 (101)
T 3u1c_A 21 ALDRAEQAEADKKAAEERSKQLEDDIVQLEK----QLRVTEDSRDQVLEELHKSEDSLLFAEENA----AKAESEVASLN 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 5566778888888899999999999999998 999998888876665554444444333322 22344567888
Q ss_pred HHHHHHH
Q 001085 796 LEIQQLK 802 (1160)
Q Consensus 796 ~eiq~l~ 802 (1160)
..||.|+
T Consensus 93 RriqllE 99 (101)
T 3u1c_A 93 RRIQLVE 99 (101)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 8888875
No 18
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=79.50 E-value=19 Score=33.66 Aligned_cols=80 Identities=16% Similarity=0.296 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHH
Q 001085 715 KALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGAL 794 (1160)
Q Consensus 715 ~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~ 794 (1160)
.|+..+..+..+.+.++....++.+++..++. ||.+|.+.++............|+..-+.. ..-+....+|
T Consensus 20 ~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~k----Kiq~lE~eld~~~e~l~~a~~kLe~~ek~~----~~AE~evasL 91 (101)
T 3u59_A 20 NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQK----KLKGTEDEVEKYSESVKEAQEKLEQAEKKA----TDAEAEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 35566778888889999999999999999998 999999999877776666655555543333 2234556788
Q ss_pred HHHHHHHH
Q 001085 795 SLEIQQLK 802 (1160)
Q Consensus 795 ~~eiq~l~ 802 (1160)
...||.|+
T Consensus 92 nRriqllE 99 (101)
T 3u59_A 92 NRRIQLVE 99 (101)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 88888774
No 19
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=78.64 E-value=3.1 Score=40.61 Aligned_cols=52 Identities=29% Similarity=0.369 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhH
Q 001085 877 IEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKE 931 (1160)
Q Consensus 877 ~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke 931 (1160)
.+|+++..|..|+.||+.||.....+ ..+....-..|+.||.+|+++|.-..
T Consensus 9 ~~d~rD~~Ie~Lkreie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 9 NKDEKDHLIERLYREISGLKAQLENM---KTESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999988777 56788888999999999999997664
No 20
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=77.44 E-value=30 Score=33.45 Aligned_cols=91 Identities=19% Similarity=0.345 Sum_probs=39.3
Q ss_pred hhhhhhHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-hhhhhhHHHh
Q 001085 552 TQVESLENELKIKSKDLSDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQ-SKGYSDSLAT 630 (1160)
Q Consensus 552 ~~iesle~elk~~~~e~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q-~~e~S~~l~~ 630 (1160)
+.++.+...-..|..++..+..-|.++...|.+|+.|++.. ++.-.+|+..| .+.+.+ .....++=..
T Consensus 15 ~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l-------~~~~~~LE~~l----~e~e~~~~~~l~~~q~~ 83 (129)
T 3tnu_B 15 TKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNV-------KKQCANLQNAI----ADAEQRGELALKDARNK 83 (129)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 34444445555566666677777888888888888666544 22222222222 222221 1122233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001085 631 IKELEAYIKNLEEELEKQAQVYE 653 (1160)
Q Consensus 631 i~~Le~qv~sl~eel~~Qaq~f~ 653 (1160)
|..||+++..+..++..|.+.|.
T Consensus 84 i~~lE~eL~~~r~e~~~ql~EYq 106 (129)
T 3tnu_B 84 LAELEEALQKAKQDMARLLREYQ 106 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 55677777777777777766554
No 21
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=76.78 E-value=57 Score=31.64 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=24.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhh
Q 001085 871 VQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLK 928 (1160)
Q Consensus 871 l~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~ 928 (1160)
+.++...+.+=+..|.-|.+.++....+.++|- .+|.+|..++..|+.+|.
T Consensus 71 ~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~-------~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 71 CDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELT-------AKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555444444443 344444444544444443
No 22
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.54 E-value=18 Score=36.16 Aligned_cols=94 Identities=19% Similarity=0.274 Sum_probs=69.8
Q ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhh-hhhhHHHHHHHHHHHHhhhhh
Q 001085 849 ERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQAL-VEDESEKEKLRKQAFQLKGDL 927 (1160)
Q Consensus 849 e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l-~~~e~eke~l~kqv~~lk~~l 927 (1160)
+.+.|.+.++.+..+......+|..-+...-+-|.....+..||+.|-+..=+==|.+ ...-.+..++.+.+.+|+..|
T Consensus 33 ~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql 112 (135)
T 2e7s_A 33 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQL 112 (135)
T ss_dssp HHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777888888889999999999999999999999999998877654333333 344567889999999999999
Q ss_pred hhhHHHHHHHHHhhh
Q 001085 928 KKKEDALNSLEKKLK 942 (1160)
Q Consensus 928 ~kke~~~~~~ek~~~ 942 (1160)
+-++.-+.++..-+.
T Consensus 113 ~e~e~ll~~lq~QL~ 127 (135)
T 2e7s_A 113 REKDMLLDTLTLQLK 127 (135)
T ss_dssp THHHHCC--------
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988887766554
No 23
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.62 E-value=41 Score=32.03 Aligned_cols=86 Identities=16% Similarity=0.259 Sum_probs=66.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhh-hhhHHHHHHHHHHHHhh
Q 001085 846 ANRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALV-EDESEKEKLRKQAFQLK 924 (1160)
Q Consensus 846 ~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~-~~e~eke~l~kqv~~lk 924 (1160)
...++..|++.++.+..+......+|..-+...-+-|.....+..||+.|-+..=+==|.|+ ..-.+..++.+++.+|+
T Consensus 10 lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~ 89 (97)
T 2eqb_B 10 LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLT 89 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888888888899999999999999999999999999988776544333333 34567788889999999
Q ss_pred hhhhhhH
Q 001085 925 GDLKKKE 931 (1160)
Q Consensus 925 ~~l~kke 931 (1160)
..|.-|+
T Consensus 90 ~qL~d~d 96 (97)
T 2eqb_B 90 EQLREKD 96 (97)
T ss_dssp HHHHHHH
T ss_pred HHHhhcc
Confidence 8887653
No 24
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=75.36 E-value=71 Score=32.05 Aligned_cols=24 Identities=21% Similarity=0.208 Sum_probs=19.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q 001085 719 EASELRMQKRHLEEMINKASEEAL 742 (1160)
Q Consensus 719 E~seLr~~~~~LEe~L~~a~~el~ 742 (1160)
|+..||+.+..+.-.|++|...|.
T Consensus 61 Ei~~Lrae~~~~QRn~~K~~~~Lk 84 (167)
T 4gkw_A 61 EIGKLRAELGTAQRNLEKADQLLK 84 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 778888888888889998876664
No 25
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.07 E-value=77 Score=32.31 Aligned_cols=56 Identities=20% Similarity=0.323 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 001085 688 AERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRD 746 (1160)
Q Consensus 688 ~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~ 746 (1160)
...+..|+..||..+ |++-=++...|-.+-..+-..|..|++.|..+..-|..++.
T Consensus 81 ~~~ie~ElEeLTasL---FeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ 136 (154)
T 2ocy_A 81 ADKLNKEVEDLTASL---FDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTL 136 (154)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347889999999877 87777777788778777777888888888888766666665
No 26
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=74.48 E-value=15 Score=33.33 Aligned_cols=59 Identities=17% Similarity=0.334 Sum_probs=47.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 001085 719 EASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLS 777 (1160)
Q Consensus 719 E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s 777 (1160)
|+.-|+.+|+.||..|..+......-..++..+|..|..+|......|++.+.+.+..+
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Ll 60 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLL 60 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999998887777777777888888888777777777766655444
No 27
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=74.10 E-value=45 Score=30.88 Aligned_cols=41 Identities=17% Similarity=0.091 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHH
Q 001085 881 KEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAF 921 (1160)
Q Consensus 881 ke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~ 921 (1160)
....+.....++..++.++..|+..+..-+.+.+.|+.++.
T Consensus 62 ~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 62 REELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777888888877777777776666666666665554
No 28
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=74.08 E-value=1.6e+02 Score=35.41 Aligned_cols=101 Identities=18% Similarity=0.211 Sum_probs=54.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhh
Q 001085 706 FDANEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKK 785 (1160)
Q Consensus 706 ~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~ 785 (1160)
..+.|+.....-+.+-..+.++..|+++...-..-+..-+..|+-.|.+|...+ ....+++..+.+...+. .++.
T Consensus 482 l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~km---e~~~~~~~~e~~~~~~~--~~~~ 556 (592)
T 1f5n_A 482 LTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKM---ENDRVQLLKEQERTLAL--KLQE 556 (592)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--HHHH
Confidence 344555544444444445666677777666655555555666666777776643 33444555555533321 1222
Q ss_pred hhhHhhhHHHHHHHHHHHhhhhhhhh
Q 001085 786 HDEEDSGALSLEIQQLKADTEKLMMD 811 (1160)
Q Consensus 786 ~~~~~~~~~~~eiq~l~~~~~~l~~e 811 (1160)
+.+-...-|..++..|..+|..|...
T Consensus 557 ~~~~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 557 QEQLLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22233344666666666666666544
No 29
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.18 E-value=25 Score=34.12 Aligned_cols=59 Identities=17% Similarity=0.096 Sum_probs=42.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 001085 719 EASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLS 777 (1160)
Q Consensus 719 E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s 777 (1160)
|+.-++.++..||..|..+......-..++..+|..|..+|......|++.+.+.+..+
T Consensus 53 el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll 111 (131)
T 3tnu_A 53 ELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILL 111 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888888888888887766666666777777777777777777776666655443
No 30
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=71.78 E-value=92 Score=31.75 Aligned_cols=94 Identities=19% Similarity=0.295 Sum_probs=72.0
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhh-hhhHHHHHHHHHHHHhhhhhh
Q 001085 850 RDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALV-EDESEKEKLRKQAFQLKGDLK 928 (1160)
Q Consensus 850 ~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~-~~e~eke~l~kqv~~lk~~l~ 928 (1160)
+..|....+....+......+|..-+...-+-|.....+..||+.|-+..=+==|.++ ..-.+..++.+.+.+|+..|+
T Consensus 46 ~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~ 125 (154)
T 2ocy_A 46 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLR 125 (154)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566677778888888888888888888888899999999887765433333333 345677889999999999999
Q ss_pred hhHHHHHHHHHhhhh
Q 001085 929 KKEDALNSLEKKLKD 943 (1160)
Q Consensus 929 kke~~~~~~ek~~~~ 943 (1160)
-++.-+.++..-+.+
T Consensus 126 e~~~~l~~lq~ql~~ 140 (154)
T 2ocy_A 126 EKDTLLDTLTLQLKN 140 (154)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998888776654
No 31
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=70.21 E-value=82 Score=30.53 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHh
Q 001085 883 AAVELLKSELELLKVQCHNLKQ 904 (1160)
Q Consensus 883 ~~~~~l~se~~~l~~q~~~lk~ 904 (1160)
.....|..+-..+..+|.+|+.
T Consensus 97 e~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 97 EMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 32
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=69.76 E-value=18 Score=33.74 Aligned_cols=101 Identities=15% Similarity=0.183 Sum_probs=57.3
Q ss_pred eeeeecccccccc----ceEEEEeecCCCCccccccccccccCccccCccchh-hhhccccCCccccccceeEEEEec--
Q 001085 21 QFHATQVAQLGEN----ALMISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYE-TVKFVREPKSGKISERIYNFIVST-- 93 (1160)
Q Consensus 21 qFhATQVPq~gwD----kLfVSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyE-Tvkl~qD~kTkk~~EkiYKfVVSm-- 93 (1160)
-+.|..+|...+. --||.|.-..-|+...||. |..+++ +|+|. +.-| .+.....+.....+|.|--
T Consensus 28 v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~---v~~~t~---nP~wne~f~f-~~v~~~~~~~~~l~i~V~d~d 100 (138)
T 1ugk_A 28 IKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTR---VLRKTL---DPAFDETFTF-YGIPYTQIQELALHFTILSFD 100 (138)
T ss_dssp EEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECC---CCSSCS---SCEEEEEEEE-ECCCSTTGGGCEEEEEEEEEC
T ss_pred EEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecC---cCcCCC---CCcEeeEEEE-cCcCHHHhccCEEEEEEEECC
Confidence 4577777764332 2344433222244333333 333332 44443 2222 1122234455677777752
Q ss_pred CCCcccccceeecchhhhhhhcCcceeeccccCCC
Q 001085 94 GLSKAGFVGEASIDFADYAEASKTSTVSLPLKYSR 128 (1160)
Q Consensus 94 GSSKSgiLGEasINlAdYaea~kp~tVSLPLK~cn 128 (1160)
..++..+||++.|+|+++.........-+||+.-.
T Consensus 101 ~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~ 135 (138)
T 1ugk_A 101 RFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGP 135 (138)
T ss_dssp SSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSSS
T ss_pred CCCCCcEEEEEEEehhHccCCCCcchhhhhhhcCC
Confidence 34567799999999999988777778888888744
No 33
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=69.32 E-value=1.1e+02 Score=31.64 Aligned_cols=96 Identities=13% Similarity=0.198 Sum_probs=57.8
Q ss_pred hhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHH-------hhhhhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001085 832 MKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQRI-------QRIEDEKEAAVELLKSELELLKVQCHNLKQ 904 (1160)
Q Consensus 832 ~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~-------~~~kdeke~~~~~l~se~~~l~~q~~~lk~ 904 (1160)
+||+.-|.-..++....-..+|...++.+...--....|+-.| |....--..+|.-|+.-+.+|..-...+|.
T Consensus 32 lkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~ 111 (168)
T 3o0z_A 32 LRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKH 111 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443333333333333 333334456777788888888888888889
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhh
Q 001085 905 ALVEDESEKEKLRKQAFQLKGDL 927 (1160)
Q Consensus 905 ~l~~~e~eke~l~kqv~~lk~~l 927 (1160)
.++.-+.++-.|...|..|+.+-
T Consensus 112 ~~~k~~~e~r~L~Ekl~~lEKe~ 134 (168)
T 3o0z_A 112 NLEKVEGERKEAQDMLNHSEKEK 134 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998886543
No 34
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=69.29 E-value=7.9 Score=35.90 Aligned_cols=113 Identities=11% Similarity=0.047 Sum_probs=64.3
Q ss_pred EEEE-eeeeecccccccc---ceEEEEeecCCCCcccccccccc-ccCccccCccchhhhhccccCCccccccceeEEEE
Q 001085 17 VFKL-QFHATQVAQLGEN---ALMISVVPLDVGKPTVRLEKAAI-EDGCCRWLNSVYETVKFVREPKSGKISERIYNFIV 91 (1160)
Q Consensus 17 vFKL-qFhATQVPq~gwD---kLfVSiVp~DtGKtTaKteKAaV-rnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVV 91 (1160)
...+ -..|..+|...+. --||.|- .|....|| ++.- .+-+..|...+.=.+. . .....+|.|
T Consensus 11 ~L~v~v~~a~~L~~~d~~g~~dpyv~v~---~~~~~~kT-~~~~~~~~nP~Wne~f~f~v~----~-----~~~~l~~~V 77 (136)
T 1wfj_A 11 TLEVVLVSAKGLEDADFLNNMDPYVQLT---CRTQDQKS-NVAEGMGTTPEWNETFIFTVS----E-----GTTELKAKI 77 (136)
T ss_dssp EEEEEEEEEEECSSCCSSCSSCCCEEEE---SSSCEEEC-CCCTTCCSSCEEEEEEEEEEE----S-----SCCEEEEEE
T ss_pred EEEEEEEeccCCCCcccCCCcCceEEEE---ECCcccee-EeccCCCCCCccCcEEEEEEC----C-----CCCEEEEEE
Confidence 3444 5678888865432 2233332 23334444 3322 3456677654332222 1 345566777
Q ss_pred ec--CCCcccccceeecchhhhhhhcCcceeecccc-CCCCCceeeEeeeeecc
Q 001085 92 ST--GLSKAGFVGEASIDFADYAEASKTSTVSLPLK-YSRSKAVLHVSIQRVQE 142 (1160)
Q Consensus 92 Sm--GSSKSgiLGEasINlAdYaea~kp~tVSLPLK-~cnsGtVLHVtIQ~Lt~ 142 (1160)
-- ..++..+||++.|+|.++.....+....+||. ......-|||.+++...
T Consensus 78 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~~p~ 131 (136)
T 1wfj_A 78 FDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPS 131 (136)
T ss_dssp CCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred EECCCCCCCceEEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEEEeC
Confidence 52 23567899999999999976555556677775 11233467888877643
No 35
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=68.65 E-value=21 Score=33.05 Aligned_cols=52 Identities=23% Similarity=0.227 Sum_probs=35.4
Q ss_pred eEEEEec--CCCc---ccccceeecchhhhhhhcCcceeeccccCCCC------CceeeEeee
Q 001085 87 YNFIVST--GLSK---AGFVGEASIDFADYAEASKTSTVSLPLKYSRS------KAVLHVSIQ 138 (1160)
Q Consensus 87 YKfVVSm--GSSK---SgiLGEasINlAdYaea~kp~tVSLPLK~cns------GtVLHVtIQ 138 (1160)
.+|-|-- ..++ ..+||++.|.+++......+....+||..-+. ..-|||.++
T Consensus 68 l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~ 130 (132)
T 3pyc_A 68 ITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQ 130 (132)
T ss_dssp EEEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEE
T ss_pred EEEEEEECCCCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEE
Confidence 5666652 2223 58999999999998777776667788876421 335677665
No 36
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=67.57 E-value=29 Score=33.64 Aligned_cols=78 Identities=22% Similarity=0.371 Sum_probs=51.4
Q ss_pred hhhhhHHHHHHHhHHHHhHHHHHHHHHHhhhhhhhHHHHhccccccCCCchHHHHHHHHHhhhhhhhhhhHHHHHHHhhh
Q 001085 328 KRAQDLSREVISLKEEKDLLKLDCEKLKTFQKRMDEAKVRNKLHFQGGDPWVLLEEIRQELSYEKDLNANLRLQLQKTQE 407 (1160)
Q Consensus 328 KrgqdLs~EVs~Lk~ERD~LK~E~EqLKs~~k~~~ea~~~~rl~~e~~D~~~~leELk~EL~~EKelNaNL~LQLqKTQE 407 (1160)
|+..||-..+..|..|+|.+|..+.+.+.- +...+--|++||.-....|..|...|.++--
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e-------------------~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq 63 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQ-------------------SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888888888888777665441 1234556677777777777788888877766
Q ss_pred hhHHH-------HHHhhhHHHHHH
Q 001085 408 SNAEL-------ILAVQDLDEMLE 424 (1160)
Q Consensus 408 SN~EL-------vlaVqDLEEmLE 424 (1160)
.|=+| .+.|.|||.++.
T Consensus 64 ~NDDLER~~R~t~~SLeD~E~k~n 87 (111)
T 2v66_B 64 ANDDLERAKRATIVSLEDFEQRLN 87 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHhhHHHHHHHHH
Confidence 55544 445555555443
No 37
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=66.51 E-value=58 Score=38.81 Aligned_cols=77 Identities=18% Similarity=0.228 Sum_probs=36.2
Q ss_pred hhhh-hHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhh---hhhhhHHHHHHHHHHHHh
Q 001085 848 RERD-ELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQA---LVEDESEKEKLRKQAFQL 923 (1160)
Q Consensus 848 ~e~~-~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~---l~~~e~eke~l~kqv~~l 923 (1160)
.|+. +|+..|.-||.++...+.-|..|+..=++--.-|..|...|.+-..-|..==.. ..-|----++++||+.|+
T Consensus 109 nE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 109 NRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQV 188 (562)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHH
Confidence 3444 677777777766666654444444433333333333333333322222210000 011223357788888887
Q ss_pred h
Q 001085 924 K 924 (1160)
Q Consensus 924 k 924 (1160)
-
T Consensus 189 ~ 189 (562)
T 3ghg_A 189 I 189 (562)
T ss_dssp H
T ss_pred h
Confidence 4
No 38
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=66.43 E-value=22 Score=32.89 Aligned_cols=59 Identities=24% Similarity=0.384 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhh
Q 001085 883 AAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEKKL 941 (1160)
Q Consensus 883 ~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~ 941 (1160)
..|..||-|++.||.+...|..-..+-....+-|..++.||+.+..-..+.+.++-.|+
T Consensus 20 dtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566777888888888877777776677778888888899888888888887776664
No 39
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=65.11 E-value=1e+02 Score=29.69 Aligned_cols=42 Identities=24% Similarity=0.362 Sum_probs=33.2
Q ss_pred hhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhh
Q 001085 744 LRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKK 785 (1160)
Q Consensus 744 ~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~ 785 (1160)
+..-|+.-|..|..+|+..+...-++..++++.-..++..+.
T Consensus 14 ~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~ 55 (119)
T 3ol1_A 14 LGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 55 (119)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888888888888888888888888888777776653
No 40
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=64.64 E-value=28 Score=32.87 Aligned_cols=118 Identities=14% Similarity=0.162 Sum_probs=62.0
Q ss_pred ceEEEEE-eeeeecccccccc---ceEEEEeecCCC--CccccccccccccCccccCccchhhhhccccCCcccccccee
Q 001085 14 IKAVFKL-QFHATQVAQLGEN---ALMISVVPLDVG--KPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIY 87 (1160)
Q Consensus 14 iKvvFKL-qFhATQVPq~gwD---kLfVSiVp~DtG--KtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiY 87 (1160)
....+++ -+.|..+|...+. --||.|--...+ +...+.++..-++-+..|...+.=.+. + .+...
T Consensus 18 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~----~-----~~~~l 88 (153)
T 3b7y_A 18 NSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVH----P-----QQHRL 88 (153)
T ss_dssp TCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEEC----T-----TTCEE
T ss_pred CccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEec----C-----CCCEE
Confidence 3344555 6788888864322 224443322222 122223333334445667554322211 1 23455
Q ss_pred EEEEec--CCCcccccceeecchhhhhhhcCc-----ceeeccccCC----CCCceeeEeeeee
Q 001085 88 NFIVST--GLSKAGFVGEASIDFADYAEASKT-----STVSLPLKYS----RSKAVLHVSIQRV 140 (1160)
Q Consensus 88 KfVVSm--GSSKSgiLGEasINlAdYaea~kp-----~tVSLPLK~c----nsGtVLHVtIQ~L 140 (1160)
+|.|-- ..++..+||++.|+|.++...... ....+||... ....-|||+++++
T Consensus 89 ~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~ 152 (153)
T 3b7y_A 89 LFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYL 152 (153)
T ss_dssp EEEEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEEC
T ss_pred EEEEEECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEe
Confidence 676652 335778999999999998876542 1356788543 2335678887763
No 41
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=63.24 E-value=47 Score=30.49 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHH
Q 001085 611 EALGNELKEQSKGYSDSLATIKELEAYIKNLEEELE 646 (1160)
Q Consensus 611 q~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~ 646 (1160)
+...+++---++..-++--+--+||++|.+|.+||.
T Consensus 45 ~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 45 EEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555566666666666689999999998886
No 42
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=62.86 E-value=71 Score=37.46 Aligned_cols=63 Identities=11% Similarity=0.107 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhh-hHHHHHHHHHHHhhhhhhhhhh
Q 001085 751 KLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDS-GALSLEIQQLKADTEKLMMDNK 813 (1160)
Q Consensus 751 Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~-~~~~~eiq~l~~~~~~l~~e~~ 813 (1160)
.|+.|.+.+.-+..++..+...+.....+|+.+..+-.+.+ ..+...|+.|+..++.|...+.
T Consensus 122 ~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~ 185 (464)
T 1m1j_B 122 YVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQ 185 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555556666666666665555544 3566666666666655444333
No 43
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=62.15 E-value=1.1e+02 Score=29.14 Aligned_cols=46 Identities=20% Similarity=0.421 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001085 689 ERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLEEMINKA 737 (1160)
Q Consensus 689 e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a 737 (1160)
..+..|+..||..+ |++-=++...|-.+-..+-..|.+|.+.|...
T Consensus 50 ~~ie~ElEeLTasL---FeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 50 DKLNKEVEDLTASL---FDEANNMVADARKEKYAIEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36788999999877 77666666666666666666666666666543
No 44
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=61.29 E-value=36 Score=31.66 Aligned_cols=65 Identities=22% Similarity=0.263 Sum_probs=42.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHh
Q 001085 719 EASELRMQKRHLEEMINKASEEALS-LRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQ 783 (1160)
Q Consensus 719 E~seLr~~~~~LEe~L~~a~~el~~-~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~ 783 (1160)
=|--|=.+|+.||..+....+.-.. +..-|+.-|..|-.+|+..+...-++..++++.-.++...
T Consensus 24 KVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~ 89 (93)
T 3s4r_A 24 KVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRL 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677888888776655443222 5666777777777777777777777777776655555444
No 45
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=59.94 E-value=45 Score=33.11 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhh
Q 001085 883 AAVELLKSELELLKVQCHNLKQA 905 (1160)
Q Consensus 883 ~~~~~l~se~~~l~~q~~~lk~~ 905 (1160)
.-+..|+.++..++.++.+++..
T Consensus 89 kE~~~lK~el~~~~~k~e~~~~e 111 (138)
T 3hnw_A 89 KEIYDLKHELIAAQIKAESSAKE 111 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 46
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=59.82 E-value=81 Score=31.61 Aligned_cols=92 Identities=24% Similarity=0.389 Sum_probs=63.7
Q ss_pred HHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhccccCccCcCccccccCCCCCCCCCChh
Q 001085 892 LELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEKKLKDSNRRASVSDGTRTTLRNNKSAPVSQGSK 971 (1160)
Q Consensus 892 ~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~~~s~~~~~~~~~t~~~~~n~~~~~~~~~s~ 971 (1160)
+..|-.|..+.|+..-+-+.--+...+.+..+.++|.+-++.....+.+
T Consensus 54 ~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k------------------------------- 102 (147)
T 2b9c_A 54 MEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGK------------------------------- 102 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
Confidence 4556677777777777767777888888999999999888877666554
Q ss_pred HHHhHHHHHHHhhhhhhhHHHHHhhcchhhHHHhhhhhhHHHHHHHHH
Q 001085 972 EIANLRERIKLLEGQIKSKEIALEASTNSFVEKEKDLKNKIEELECRV 1019 (1160)
Q Consensus 972 ~~a~l~~~ik~~e~~ik~~~~a~~~s~~~~~~ke~~l~~~i~e~~~~~ 1019 (1160)
+..|.+-|+.+-..+|+ |+.|..-+-++|-.+..+|.-|..+|
T Consensus 103 -~~eLEeeL~~~~~nlKs----LE~~eekas~rE~~yee~I~~L~~kL 145 (147)
T 2b9c_A 103 -CAELEEELKTVTNNLKS----LEDKVEELLSKNYHLENEVARLKKLV 145 (147)
T ss_dssp -HHHHHHHHHHHHHHHHH----HHHTTTTHHHHHHHHHHHHTTSCCCC
T ss_pred -HHHHHHHHHHHHHHHHh----hHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455556666555665 45555566778877777777665544
No 47
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=59.58 E-value=30 Score=31.46 Aligned_cols=107 Identities=16% Similarity=0.235 Sum_probs=59.9
Q ss_pred eeeeeccccc------cccceEEEEeecCCCCccccccccccccCccccCccch-hhhhccccCCccccccceeEEEEe-
Q 001085 21 QFHATQVAQL------GENALMISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVY-ETVKFVREPKSGKISERIYNFIVS- 92 (1160)
Q Consensus 21 qFhATQVPq~------gwDkLfVSiVp~DtGKtTaKteKAaVrnG~C~W~dpIy-ETvkl~qD~kTkk~~EkiYKfVVS- 92 (1160)
-..|..+|.. |.---||.|--...++...|| .|..++ .+|+| |+..|.-... .....+|.|-
T Consensus 9 v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT---~v~~~t---~nP~wne~f~f~v~~~----~~~~l~i~V~d 78 (126)
T 1rlw_A 9 VLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRT---RHFNND---INPVWNETFEFILDPN----QENVLEITLMD 78 (126)
T ss_dssp EEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEEC---CCCTTC---SSCEEEEEEEEEECTT----SCCEEEEEEEE
T ss_pred EEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEc---cccCCC---CCCcccceEEEEecCC----CCCEEEEEEEE
Confidence 4578888862 333445555443333344443 232222 24444 3433322111 1345666665
Q ss_pred cCCCcccccceeecchhhhhhhcCcceeeccccCCCCCceeeEeeee
Q 001085 93 TGLSKAGFVGEASIDFADYAEASKTSTVSLPLKYSRSKAVLHVSIQR 139 (1160)
Q Consensus 93 mGSSKSgiLGEasINlAdYaea~kp~tVSLPLK~cnsGtVLHVtIQ~ 139 (1160)
-+..+..+||++.|+|.++.. -.+....+||..... ..+||+++.
T Consensus 79 ~d~~~~~~iG~~~i~l~~l~~-~~~~~~~~~L~~~~~-g~i~~~le~ 123 (126)
T 1rlw_A 79 ANYVMDETLGTATFTVSSMKV-GEKKEVPFIFNQVTE-MVLEMSLEV 123 (126)
T ss_dssp CCSSCCEEEEEEEEEGGGSCT-TCEEEEEEEETTTEE-EEEEEEEEC
T ss_pred CCCCCCceeEEEEEEHHHccC-CCcEEEEEEcCCCce-EEEEEEEEe
Confidence 344457899999999999864 556678899987433 355666553
No 48
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=58.35 E-value=54 Score=32.51 Aligned_cols=72 Identities=21% Similarity=0.340 Sum_probs=46.5
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhc
Q 001085 866 SSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKKKEDALNSLEKKLKDS 944 (1160)
Q Consensus 866 ~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~~~s 944 (1160)
....|+..++.- +..|..+++.+.....+|||-|..-..+.+.+.+++..|+.++..-+..+..+|..++++
T Consensus 65 NiadEl~k~~~~-------~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~~ 136 (138)
T 3hnw_A 65 NIADDYFKAKKM-------ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELNDS 136 (138)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566665544 444555666666666667777777777777777777777777766666666666666655
No 49
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=58.32 E-value=1.7e+02 Score=30.18 Aligned_cols=56 Identities=18% Similarity=0.297 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhh
Q 001085 728 RHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQK 784 (1160)
Q Consensus 728 ~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~ 784 (1160)
..||--|..+++.|+.-.+ .-.|+.--...+.....+.|+...+|.++...|+..+
T Consensus 9 ~~LekQL~E~n~kLk~EsE-~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k 64 (168)
T 3o0z_A 9 SQLQKQLEEANDLLRTESD-TAVRLRKSHTEMSKSISQLESLNRELQERNRILENSK 64 (168)
T ss_dssp -CTHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777766544 3346666666777777777777777777777775544
No 50
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=58.08 E-value=1.2e+02 Score=28.36 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001085 835 TVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELL 895 (1160)
Q Consensus 835 ~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l 895 (1160)
.++.++.-......++..|...+..+..+.+.+.+.|...+..-++.+......-+++.+|
T Consensus 31 ~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L 91 (101)
T 3u1c_A 31 DKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555666666666666666666665555544444344444444333344333
No 51
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=57.97 E-value=1.1e+02 Score=29.61 Aligned_cols=103 Identities=19% Similarity=0.277 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhH
Q 001085 746 DDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESL 825 (1160)
Q Consensus 746 ~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~ 825 (1160)
.-|..|+.+|..+...-+..+... ..-+..+...||.|.++|+.+..-+..|-..+
T Consensus 11 ~~y~~K~eel~~~~~~~~~~l~~~------------------k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l------ 66 (129)
T 3tnu_B 11 SWYQTKYEELQQTAGRHGDDLRNT------------------KHEISEMNRMIQRLRAEIDNVKKQCANLQNAI------ 66 (129)
T ss_dssp -----------------------C------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------
Confidence 346677777766654433333211 12245556677777777776665555444332
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhh
Q 001085 826 RVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIED 879 (1160)
Q Consensus 826 ~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kd 879 (1160)
..+. ..++.-+......+..|+..++-++.+.+..+.|...|-..|-
T Consensus 67 ----~e~e---~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl 113 (129)
T 3tnu_B 67 ----ADAE---QRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKL 113 (129)
T ss_dssp ----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 3455667777778888888888888888888877776665553
No 52
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=57.83 E-value=28 Score=33.18 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=39.9
Q ss_pred eEEEEec-CC-Cc-ccccceeecchhhhhhhcCcceeeccccCCCCCceeeEeee
Q 001085 87 YNFIVST-GL-SK-AGFVGEASIDFADYAEASKTSTVSLPLKYSRSKAVLHVSIQ 138 (1160)
Q Consensus 87 YKfVVSm-GS-SK-SgiLGEasINlAdYaea~kp~tVSLPLK~cnsGtVLHVtIQ 138 (1160)
..|-|-- +. ++ ..+||++.|+|.+......+..--+||.....|.-.|++++
T Consensus 95 L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~g~~~~lkv~ 149 (153)
T 3fbk_A 95 LLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLGRTKHLKVA 149 (153)
T ss_dssp EEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTGGGTCCCBCC
T ss_pred EEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChhhcccccceec
Confidence 5666652 22 44 78999999999999877788888999999888888887664
No 53
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.29 E-value=13 Score=34.73 Aligned_cols=103 Identities=18% Similarity=0.167 Sum_probs=55.7
Q ss_pred eeeecccccccc---ceEEEEeecCCCCccccccccccccCccccCccchhhhhccccCCccccccceeEEEEec--CCC
Q 001085 22 FHATQVAQLGEN---ALMISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVST--GLS 96 (1160)
Q Consensus 22 FhATQVPq~gwD---kLfVSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVSm--GSS 96 (1160)
+.|..+|...+. --||.|.-..-++...|| +..-.+-+..|...+ .|.- .....+......|-|-- ..+
T Consensus 33 ~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT-~v~~~t~nP~wne~f----~f~~-~~~~~~~~~~l~i~V~d~d~~~ 106 (141)
T 2d8k_A 33 MKAQELPAKDFSGTSDPFVKIYLLPDKKHKLET-KVKRKNLNPHWNETF----LFEG-FPYEKVVQRILYLQVLDYDRFS 106 (141)
T ss_dssp EEEESCCCCSSSSCCCEEEEEEEESCCSSEEEC-CCCTTCSSCCCCEEE----EECS-CCHHHHTTSEEEEEEEECCSSS
T ss_pred EEeECCCCCCCCCCCCcEEEEEEECCCCccEeC-ceEcCCCCCccccEE----EECc-cCHHHcccCEEEEEEEECCCCC
Confidence 467777764332 234443322223344443 222233355665433 2210 01112234555666652 235
Q ss_pred cccccceeecchhhhhhhcCcceeeccccCCCCCc
Q 001085 97 KAGFVGEASIDFADYAEASKTSTVSLPLKYSRSKA 131 (1160)
Q Consensus 97 KSgiLGEasINlAdYaea~kp~tVSLPLK~cnsGt 131 (1160)
+..+||++.|+|+++... .+...-+||..+..|+
T Consensus 107 ~~~~iG~~~i~l~~l~~~-~~~~~W~~L~~~~~~s 140 (141)
T 2d8k_A 107 RNDPIGEVSIPLNKVDLT-QMQTFWKDLKPSGPSS 140 (141)
T ss_dssp SCEEEEEEEEETTTSCTT-SCEEEEECCEECCCCC
T ss_pred CCcEEEEEEEEhhhhcCC-CCccEEEECcCCCCCC
Confidence 678999999999998764 3677889998876553
No 54
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=56.85 E-value=53 Score=30.16 Aligned_cols=59 Identities=19% Similarity=0.262 Sum_probs=36.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhh-hhhhHhh--hHHHHHHHHHHHhhhhhhh
Q 001085 752 LCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQK-KHDEEDS--GALSLEIQQLKADTEKLMM 810 (1160)
Q Consensus 752 i~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~-~~~~~~~--~~~~~eiq~l~~~~~~l~~ 810 (1160)
|.+|..|++..+...-++..++++....++..+ |++++.. .....+|..|+..+..++.
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l 63 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASL 63 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 456777777777777888888887777776654 4555544 3444444455544444443
No 55
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=56.56 E-value=35 Score=31.56 Aligned_cols=104 Identities=13% Similarity=0.192 Sum_probs=57.9
Q ss_pred eeeeeccccccccc---eEEEEeecCCCCccccccccccccCccccCccchhhhhccccCCccccccceeEEEEec--CC
Q 001085 21 QFHATQVAQLGENA---LMISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVST--GL 95 (1160)
Q Consensus 21 qFhATQVPq~gwDk---LfVSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVSm--GS 95 (1160)
-..|..+|...+.. -||.|- .|....|| +..-.+-+..|...+.=.+. ++ ....+|.|-- ..
T Consensus 19 v~~a~~L~~~d~~g~~dpyv~v~---~~~~~~kT-~~~~~t~nP~wne~f~f~~~---~~------~~~l~i~V~d~d~~ 85 (133)
T 2ep6_A 19 VLKAADLLAADFSGKSDPFCLLE---LGNDRLQT-HTVYKNLNPEWNKVFTFPIK---DI------HDVLEVTVFDEDGD 85 (133)
T ss_dssp EEEEESCCCSSSSSCCCEEEEEE---ETTEEEEC-CCCSSCSSCCCCEEEEEEES---CT------TCEEEEEEEEEETT
T ss_pred EEeeECCCCCCCCCCcCeEEEEE---ECCEEEEe-eeecCCCCCccccEEEEEec---CC------CCEEEEEEEECCCC
Confidence 46788888654332 344333 23333433 22223445566543332221 11 2345666652 33
Q ss_pred CcccccceeecchhhhhhhcCcceeeccccCCC----CCceeeEeeeee
Q 001085 96 SKAGFVGEASIDFADYAEASKTSTVSLPLKYSR----SKAVLHVSIQRV 140 (1160)
Q Consensus 96 SKSgiLGEasINlAdYaea~kp~tVSLPLK~cn----sGtVLHVtIQ~L 140 (1160)
++..+||++.|+|.++... ...-+||..-+ ...-|||.|+.+
T Consensus 86 ~~~~~lG~~~i~l~~l~~~---~~~w~~L~~~~~~~~~~G~i~l~i~~~ 131 (133)
T 2ep6_A 86 KPPDFLGKVAIPLLSIRDG---QPNCYVLKNKDLEQAFKGVIYLEMDLI 131 (133)
T ss_dssp EEEEECCBCEEEGGGCCSS---CCEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred CCCCeeEEEEEEHHHccCC---CceEEEeecCCCCCccceEEEEEEEEE
Confidence 5788999999999998653 24567876432 345678888764
No 56
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.82 E-value=35 Score=34.14 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 001085 689 ERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALSLRD 746 (1160)
Q Consensus 689 e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~~~~ 746 (1160)
..+..|+..||..+ |++-=++...|-.+-..+-..|..|++.|..+..=|..+++
T Consensus 70 ~~ie~ElE~LTasL---FeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~ 124 (135)
T 2e7s_A 70 DKLNKEVEDLTASL---FDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTL 124 (135)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC-----
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888999999877 77766666677666666666677777777766555554444
No 57
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=54.67 E-value=1e+02 Score=30.31 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 001085 667 EQRAIQAEETLRKTR---LKNANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALS 743 (1160)
Q Consensus 667 E~rai~aEeaLrktR---~~na~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~ 743 (1160)
++...+|.+.|+.+. +--..||+.|..-+...-.|. ...+-+|+-....|-..|+++++++..
T Consensus 31 q~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~--------------q~~vqeLqgEI~~Lnq~Lq~a~ae~er 96 (121)
T 3mq7_A 31 QQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG--------------QKKVEELEGEITTLNHKLQDASAEVER 96 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhHH
Q 001085 744 LRDDYET 750 (1160)
Q Consensus 744 ~~~~~e~ 750 (1160)
++.+++.
T Consensus 97 lr~~~~~ 103 (121)
T 3mq7_A 97 LRRENQV 103 (121)
T ss_dssp HHHHHHH
T ss_pred HHhhchh
No 58
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=54.63 E-value=21 Score=32.65 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=31.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 001085 718 AEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEIN 774 (1160)
Q Consensus 718 ~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~ 774 (1160)
.|+..|+.++..||..|..+......-..++..+|..|..+|......|+..+.+.+
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq 59 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQ 59 (86)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888999999999998887666555555666666666666555555555444443
No 59
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.27 E-value=44 Score=30.96 Aligned_cols=58 Identities=14% Similarity=0.247 Sum_probs=37.3
Q ss_pred cceeEEEEec--CCCcccccceeecchhhhhhhcC-cceee-ccccCCCC---CceeeEeeeeec
Q 001085 84 ERIYNFIVST--GLSKAGFVGEASIDFADYAEASK-TSTVS-LPLKYSRS---KAVLHVSIQRVQ 141 (1160)
Q Consensus 84 EkiYKfVVSm--GSSKSgiLGEasINlAdYaea~k-p~tVS-LPLK~cns---GtVLHVtIQ~Lt 141 (1160)
....+|-|-- ..++..+||++.|+|.++..... ...+. +||...+. +..|||.|++.-
T Consensus 69 ~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p 133 (140)
T 2dmh_A 69 SSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDP 133 (140)
T ss_dssp TCEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECC
T ss_pred CCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEEC
Confidence 3556666652 33567899999999999865432 22233 55765432 367799988754
No 60
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=53.25 E-value=1.5e+02 Score=28.81 Aligned_cols=22 Identities=14% Similarity=0.065 Sum_probs=11.3
Q ss_pred HHHHHHHHhhhhhhhHHHHHHH
Q 001085 838 EYELLIQRANRERDELESTIAL 859 (1160)
Q Consensus 838 ~~~~~~~~~~~e~~~l~~~~~~ 859 (1160)
.+|..|.....++++|..+++.
T Consensus 35 ~AEeaL~~Kq~~idelk~ei~q 56 (110)
T 2v4h_A 35 QAEEALVAKQELIDKLKEEAEQ 56 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544
No 61
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=53.12 E-value=96 Score=30.08 Aligned_cols=103 Identities=15% Similarity=0.229 Sum_probs=49.9
Q ss_pred hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhH
Q 001085 746 DDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESL 825 (1160)
Q Consensus 746 ~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~ 825 (1160)
.-|..|+.+|..+...-+..+... ..-+..+...||.|.++|+.+..-+..|-..+
T Consensus 13 ~~y~~K~eel~~~~~~~~~~l~~~------------------k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l------ 68 (131)
T 3tnu_A 13 EWFFTKTEELNREVATNSELVQSG------------------KSEISELRRTMQNLEIELQSQLSMKASLENSL------ 68 (131)
T ss_dssp ----------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH------
Confidence 346677777776654433333221 12245666777788888776665555443332
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhh
Q 001085 826 RVELAQMKTTVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIED 879 (1160)
Q Consensus 826 ~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kd 879 (1160)
..+. ..++.-+......+..|+..++-++.+.+..+.|...|-..|-
T Consensus 69 ----~e~e---~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl 115 (131)
T 3tnu_A 69 ----EETK---GRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKT 115 (131)
T ss_dssp ----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 3455666777777888888888888888888777776665553
No 62
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=50.52 E-value=2.2e+02 Score=28.98 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=20.0
Q ss_pred HHHHHHHHhhHHHHHHhhHHHHHHHHHHHHH
Q 001085 646 EKQAQVYEADLEVVTRAKVEQEQRAIQAEET 676 (1160)
Q Consensus 646 ~~Qaq~f~~dl~a~~~~k~eqE~rai~aEea 676 (1160)
..+...|+..+..++..-.+.+.||.-||-.
T Consensus 69 sqrEd~yEeqIk~L~~kLKEAE~RAE~AERs 99 (155)
T 2efr_A 69 SQKEDKYEEEIKVLSDKLKEAETRAEFAERS 99 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777777777777777777666443
No 63
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=50.23 E-value=1e+02 Score=30.05 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001085 685 ANTAERLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEA 741 (1160)
Q Consensus 685 a~~~e~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el 741 (1160)
....+.|+.|+.+|..++ |++.+.|=..+..|+.+...||..|.......
T Consensus 14 D~~Ie~Lkreie~lk~el-------e~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~ 63 (120)
T 3i00_A 14 DHLIERLYREISGLKAQL-------ENMKTESQRVVLQLKGHVSELEADLAEQQHLR 63 (120)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888877766 77777888888888888888887777765443
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=48.77 E-value=2.5e+02 Score=31.66 Aligned_cols=11 Identities=9% Similarity=0.045 Sum_probs=7.2
Q ss_pred HHHhhhhcccC
Q 001085 533 EQLKMQYECSS 543 (1160)
Q Consensus 533 e~l~~~~ecSs 543 (1160)
+.+.+..-|++
T Consensus 340 NLV~L~gyC~s 350 (487)
T 3oja_A 340 EIDALKEQYRT 350 (487)
T ss_dssp HHHHHHHHTCC
T ss_pred chhhHHHHhcC
Confidence 34556778877
No 65
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=48.19 E-value=21 Score=33.57 Aligned_cols=102 Identities=13% Similarity=0.176 Sum_probs=53.9
Q ss_pred eeeeeccccc--cccceE--EEEeecCCCCccccccccccccCccccCccchh-hhhccccCCccccccceeEEEEec--
Q 001085 21 QFHATQVAQL--GENALM--ISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYE-TVKFVREPKSGKISERIYNFIVST-- 93 (1160)
Q Consensus 21 qFhATQVPq~--gwDkLf--VSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyE-Tvkl~qD~kTkk~~EkiYKfVVSm-- 93 (1160)
-.+|..+|.- |..--| |++.|...+....||. |..++| +|+|. +..|. ......+..+...|.|--
T Consensus 26 V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~---v~~~t~---nP~wnE~f~f~-~v~~~~l~~~~L~~~V~d~d 98 (134)
T 2b3r_A 26 VMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTK---ISRKTR---NPTFNEMLVYS-GYSKETLRQRELQLSVLSAE 98 (134)
T ss_dssp EEEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECC---CCCSCS---SCEEEEEEEEE-SCCHHHHTTCEEEEEEEECC
T ss_pred EEEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCC---cCcCCC---CCCCccEEEEC-CcCHHHhCcCEEEEEEEECC
Confidence 4577777741 211223 3556643344444443 333332 44442 33331 011223345667777762
Q ss_pred CCCcccccceeecchhhhhhhcCcceeeccccCCCCC
Q 001085 94 GLSKAGFVGEASIDFADYAEASKTSTVSLPLKYSRSK 130 (1160)
Q Consensus 94 GSSKSgiLGEasINlAdYaea~kp~tVSLPLK~cnsG 130 (1160)
..++..+||++.|+|++... ..+...-+||....+|
T Consensus 99 ~~~~~~~lG~~~i~l~~l~~-~~~~~~W~~L~~~~~g 134 (134)
T 2b3r_A 99 SLRENFFLGGITLPLKDFNL-SKETVKWYQLTAATYL 134 (134)
T ss_dssp SSSCCEEEEEEEEEGGGSCT-TSCEEEEEECBC----
T ss_pred CCCCCcEEEEEEEEhhhccC-CCCcceeEECCCccCC
Confidence 44567899999999999865 3566677888876655
No 66
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=47.94 E-value=55 Score=34.67 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=14.4
Q ss_pred hhhhHHHHHhhhhhchhhHH-HHHHHHHHHHH
Q 001085 554 VESLENELKIKSKDLSDSLA-IINELETHIEG 584 (1160)
Q Consensus 554 iesle~elk~~~~e~sdSl~-~I~~Le~qi~~ 584 (1160)
.+.++..+..+..++...+. .+.++.+++..
T Consensus 145 ~eelr~kl~~~veelk~~l~P~~ee~r~kl~~ 176 (243)
T 2a01_A 145 GEEMRDRARAHVDALRTHLAPYSDELRQRLAA 176 (243)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444555555555444444 44444444433
No 67
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=47.74 E-value=1.2e+02 Score=27.59 Aligned_cols=66 Identities=21% Similarity=0.363 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHH
Q 001085 573 AIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNL 641 (1160)
Q Consensus 573 ~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl 641 (1160)
+....|+..+..+|.....+ ...++..+..|+.+|+....++-+|..+|-+.+..=-.|+..|..-
T Consensus 8 ~~~~sLE~~l~e~e~~~~~~---~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatY 73 (84)
T 1gk4_A 8 GTNESLERQMREMEENFAVE---AANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATY 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34556777777777555544 4578899999999999999999999999976665433676665443
No 68
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=46.51 E-value=1.5e+02 Score=27.63 Aligned_cols=67 Identities=19% Similarity=0.252 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhHHHHHHHhh
Q 001085 762 KTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQKESLRVELAQMK 833 (1160)
Q Consensus 762 ~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~~e~~~~~~~~~k 833 (1160)
|....|+--..|+.+..++... ........|..+|..|+..|..+..++..|--++ ++|..+++.+|
T Consensus 24 KVR~LEqqN~~Le~~i~~l~~~--~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~---dnl~~~~~~~k 90 (93)
T 3s4r_A 24 KVRFLEQQNKILLAELEQLKGQ--GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVER---DNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc--cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 3333444444444444444322 2223446678889999999998888888777655 34666666555
No 69
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=45.65 E-value=2.9e+02 Score=28.93 Aligned_cols=170 Identities=11% Similarity=0.136 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH----------hhhhhhHHHhHHHHHHHHHHH
Q 001085 572 LAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQ----------SKGYSDSLATIKELEAYIKNL 641 (1160)
Q Consensus 572 l~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q----------~~e~S~~l~~i~~Le~qv~sl 641 (1160)
.++|+.+|.++..++.-|++-....+.+-.....+..-..+.-..|..- -..+..+|..+...-..|.+.
T Consensus 20 R~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~~~~~L~~f~~~l~ei~~~ 99 (265)
T 2q12_A 20 RSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSC 99 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCCC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3488899999999887777766555544444444433322222222211 011122333333333333333
Q ss_pred HHH--------HHHHHHHHH-hhHHHHHHhhHHHHHHHHHHHHHHHH---HHhhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 001085 642 EEE--------LEKQAQVYE-ADLEVVTRAKVEQEQRAIQAEETLRK---TRLKNANTAERLQEEFRRLSVQMASSFDAN 709 (1160)
Q Consensus 642 ~ee--------l~~Qaq~f~-~dl~a~~~~k~eqE~rai~aEeaLrk---tR~~na~~~e~LqeE~~~LS~qmsSt~een 709 (1160)
... +....+.|. .|+..+...+...+.....=+.+|.| .+..+...+. |+ .-..++..+-..=
T Consensus 100 ~~~l~~~~~~~~~~PL~~f~~~dlk~~ke~kk~fdk~~~~yd~al~k~~~~~k~k~~e~~-l~----Ea~~~l~~~Rk~f 174 (265)
T 2q12_A 100 HAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKV-KY----EVTEDVYTSRKKQ 174 (265)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHH-HH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhh-HH----HHHHHHHHHHHHH
Confidence 333 334444555 67777777777777777666666766 4444332111 11 1111121122223
Q ss_pred hHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhhhh
Q 001085 710 EKVAMKALAEASELRMQK--RHLEEMINKASEEALSLRD 746 (1160)
Q Consensus 710 E~~~~~A~~E~seLr~~~--~~LEe~L~~a~~el~~~~~ 746 (1160)
+....+-+.-+..++..+ ..|+.++.=+.+.+.--+.
T Consensus 175 ~~~~ldyv~~l~~l~~kk~~e~le~l~~~~~a~~~ff~~ 213 (265)
T 2q12_A 175 HQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKM 213 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555433 4677777666666655443
No 70
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=45.33 E-value=46 Score=32.48 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=34.7
Q ss_pred ceeEEEEec--CCCcccccceeecchhhhhhhcCcce-----eeccccC----CCCCceeeEeeeeecc
Q 001085 85 RIYNFIVST--GLSKAGFVGEASIDFADYAEASKTST-----VSLPLKY----SRSKAVLHVSIQRVQE 142 (1160)
Q Consensus 85 kiYKfVVSm--GSSKSgiLGEasINlAdYaea~kp~t-----VSLPLK~----cnsGtVLHVtIQ~Lt~ 142 (1160)
...+|.|-- ..++..+||++.|+|++......... ..+||.. ......|||.|.++..
T Consensus 74 ~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 74 HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp CEEEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred CEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence 345666652 34467899999999999987543311 3567654 2234678999988754
No 71
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=45.00 E-value=1.9e+02 Score=26.82 Aligned_cols=61 Identities=20% Similarity=0.185 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001085 835 TVKEYELLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELL 895 (1160)
Q Consensus 835 ~~~~~~~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l 895 (1160)
.++.++.-......++..|..+|..+..+.+.+.+.|.....--++.+.....--+++.+|
T Consensus 31 ~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasL 91 (101)
T 3u59_A 31 DKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555566667777777777766666655555544444444444444444444
No 72
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=44.57 E-value=38 Score=32.37 Aligned_cols=33 Identities=30% Similarity=0.355 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001085 475 KETYLLEQKIMDLYSEIEIYRRDKDELETQMEQ 507 (1160)
Q Consensus 475 kE~~~L~~KI~eL~~ele~y~~~~~eLe~k~eq 507 (1160)
.++..|+.+|..|..|-+..++.++.||.++++
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378899999999999999999999999988877
No 73
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=43.75 E-value=2e+02 Score=30.30 Aligned_cols=80 Identities=26% Similarity=0.326 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHH
Q 001085 571 SLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQAQ 650 (1160)
Q Consensus 571 Sl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~~Qaq 650 (1160)
+...+..++.++.+|..+.+.-...|..++++++.++..=...+. .=|.-|+.=+++=..+|..++..|...||
T Consensus 130 ~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~------~L~~KF~~lLNeKK~KIR~lq~~Ll~~~~ 203 (213)
T 1ik9_A 130 ALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALET------DLYKRFILVLNEKKTKIRSLHNKLLNAAQ 203 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444678899999999887777666666666666655554333332 34677788888889999999988888888
Q ss_pred HHHhhH
Q 001085 651 VYEADL 656 (1160)
Q Consensus 651 ~f~~dl 656 (1160)
..+.++
T Consensus 204 ~~~~~~ 209 (213)
T 1ik9_A 204 EREKDI 209 (213)
T ss_dssp HHHHHH
T ss_pred Hhhhhh
Confidence 777765
No 74
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=43.46 E-value=1.4e+02 Score=26.82 Aligned_cols=68 Identities=19% Similarity=0.150 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHHH
Q 001085 750 TKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEIQQLKADTEKLMMDNKSLSEEAEQ 821 (1160)
Q Consensus 750 ~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e~ 821 (1160)
-||+.|-...+.-....++.-..+..+-... ...+..+.++...|+.|+.++++..........+++.
T Consensus 6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~----~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 6 KKMQMLKLDKENALDRAEQAEADKKAAEERS----KQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777777777776666665555444433333 4455667888888888888887666554444444433
No 75
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=43.11 E-value=2.8e+02 Score=28.06 Aligned_cols=134 Identities=17% Similarity=0.146 Sum_probs=70.8
Q ss_pred HHHHHHhhccC-hhhHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHhhhhcchhhhHhHHHHHHHHhhhhc
Q 001085 463 ALEELVKEHRD-VKETYLLEQKIMDLYSEIEIYRRD-KDELETQMEQLALDYEILKQENHDISYKLEQSQLQEQLKMQYE 540 (1160)
Q Consensus 463 ~l~~l~ke~~d-~kE~~~L~~KI~eL~~ele~y~~~-~~eLe~k~eqL~~dye~LkQEN~dis~KLEqsqlqe~l~~~~e 540 (1160)
.+..+++.|.. ..++..-..+|..|...-..+-.. ...+..+..+|..-|..|..--..=.-+|+ .|+.- -.+
T Consensus 39 ~ve~llkkH~~le~ei~~~~~~v~~l~~~a~~l~~~~~~~i~~rl~~l~~~~~~L~~~a~~R~~~L~--~L~~f---~~~ 113 (210)
T 3pdy_A 39 SVEAQLGSHRGLHQSIEEFRAKIERARSDEGQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLE--SLHSF---VAA 113 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH---HHH
Confidence 44455555543 234555555555443221111000 122445556676667666544322224444 33331 123
Q ss_pred ccCCCCCCCCchhhhhhHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 001085 541 CSSIGNGSEPETQVESLENELKIKSKDLSDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQ 609 (1160)
Q Consensus 541 cSs~~~~~~le~~iesle~elk~~~~e~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~ee 609 (1160)
|.. ++.=| -+.+....+.++.+.+..|..|..+-+.++.||+.....+..++...+.|...
T Consensus 114 ~~~------~~~Wl--~eke~~~~s~d~g~~~~~v~~l~~k~~~f~~el~~~~~~v~~l~~~~~~Ll~~ 174 (210)
T 3pdy_A 114 ATK------ELMWL--NEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLRE 174 (210)
T ss_dssp HHH------HHHHH--HHHHHHHHHSCCSTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH------HHHHH--HHHHHHHHccccCCCchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 311 00000 01233334456777878888888888899999988888888888888777654
No 76
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=43.08 E-value=37 Score=31.85 Aligned_cols=62 Identities=18% Similarity=0.259 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHH
Q 001085 576 NELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKN 640 (1160)
Q Consensus 576 ~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~s 640 (1160)
..|+..++.+|.....+ ...++..+..|+.+|+....++.+|..+|-+.+..=-.|+..|..
T Consensus 22 ~~LE~~l~e~E~~~~~e---~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIat 83 (95)
T 3mov_A 22 RACLERIQELEDLLAKE---KDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISA 83 (95)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666544443 336778888888999989999999988887555433356655543
No 77
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=42.63 E-value=1.7e+02 Score=29.95 Aligned_cols=65 Identities=25% Similarity=0.316 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHH
Q 001085 856 TIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQA 920 (1160)
Q Consensus 856 ~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv 920 (1160)
.|..|+++.......+..+..-=.+|...+..|+.|+.+|..|++-+-..+..=+.|...|=...
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555677778888888888888887777766666555555554443
No 78
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=42.29 E-value=43 Score=39.81 Aligned_cols=117 Identities=17% Similarity=0.237 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q 001085 605 ELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEEELEKQAQVYEADLEVVTRAKVEQEQRAIQAEETLRKTRLKN 684 (1160)
Q Consensus 605 ~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~eel~~Qaq~f~~dl~a~~~~k~eqE~rai~aEeaLrktR~~n 684 (1160)
+|+..|...+++.++...+...+-.++..|+.+..- ...+....++++..||++.++.+...
T Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~------------------~~~e~~~l~~~~~~~e~~~~~l~~~~ 400 (575)
T 2i1j_A 339 EYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQ------------------LQAAKEELEQRQNELQAMMQRLEETK 400 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555554455544444433 33344455566666666666666555
Q ss_pred hhHHH---HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 001085 685 ANTAE---RLQEEFRRLSVQMASSFDANEKVAMKALAEASELRMQKRHLEEMINKASEEALS 743 (1160)
Q Consensus 685 a~~~e---~LqeE~~~LS~qmsSt~eenE~~~~~A~~E~seLr~~~~~LEe~L~~a~~el~~ 743 (1160)
..+++ +|..+++.....++-..++.++- ..|+..|+.+.....+.+.+|.++|..
T Consensus 401 ~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~----~~e~~~~~~~~~~a~~~~~~~~~~l~~ 458 (575)
T 2i1j_A 401 NMEAAERQKLEDEIRAKQEEVSRIQQEVELK----DSETRRLQEEVEDARRKQDEAAAALLA 458 (575)
T ss_dssp ---------------------------------------------CHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444 55555555555554444444432 236677777766677777777777655
No 79
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=40.84 E-value=55 Score=36.92 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=37.5
Q ss_pred ceeEEEEec--CCCcccccceeecchhhhhhhc---CcceeeccccCCCCCceeeEeee
Q 001085 85 RIYNFIVST--GLSKAGFVGEASIDFADYAEAS---KTSTVSLPLKYSRSKAVLHVSIQ 138 (1160)
Q Consensus 85 kiYKfVVSm--GSSKSgiLGEasINlAdYaea~---kp~tVSLPLK~cnsGtVLHVtIQ 138 (1160)
....|.|-- ..++..+||+++|++++..... .|...-+||.+..+|.| ||.+.
T Consensus 448 ~~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i-~l~~~ 505 (510)
T 3jzy_A 448 DVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEV-WVRFD 505 (510)
T ss_dssp CEEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEE-EEEEE
T ss_pred CEEEEEEEeCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCCCCCCceE-EEEEE
Confidence 345666652 3356789999999999988633 35777899999888864 55543
No 80
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=40.78 E-value=77 Score=32.31 Aligned_cols=102 Identities=12% Similarity=0.136 Sum_probs=50.2
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhh-------HHH
Q 001085 841 LLIQRANRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDE-------SEK 913 (1160)
Q Consensus 841 ~~~~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e-------~ek 913 (1160)
..+-.+-..|+.+++.|+-+-.+.-++... +-.-+.+++ ...|..|++++..++..+.+|+..|-+.. .|-
T Consensus 28 ~~l~~rL~~Rd~~E~~~~~l~~e~~~~~~~-~~vs~~~~~-~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl 105 (152)
T 3a7p_A 28 DLLIRRLTDRNDKEAHLNELFQDNSGAIGG-NIVSHDDAL-LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAAL 105 (152)
T ss_dssp -----------------------------C-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhccCCCc-ccccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347777888999999998887766544332 011122344 35999999999999999999997766554 345
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHhhhhc
Q 001085 914 EKLRKQAFQLKGDLKKKEDALNSLEKKLKDS 944 (1160)
Q Consensus 914 e~l~kqv~~lk~~l~kke~~~~~~ek~~~~s 944 (1160)
.-|+-|+..+...+.+-+++...+..|+..-
T Consensus 106 ~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~r 136 (152)
T 3a7p_A 106 ISGTIENNVLQQKLSDLKKEHSQLVARWLKK 136 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777788888777776666666444
No 81
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=40.62 E-value=2.6e+02 Score=27.09 Aligned_cols=48 Identities=13% Similarity=0.046 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 001085 574 IINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQS 621 (1160)
Q Consensus 574 ~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~ 621 (1160)
.+..|..++.+|..|.+.=+-.|...+++.++.+..||+-...|+...
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~ 51 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIK 51 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999988877777777666666665555555555544443
No 82
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=40.46 E-value=1.2e+02 Score=27.84 Aligned_cols=103 Identities=14% Similarity=0.180 Sum_probs=55.7
Q ss_pred eeeeeccccccccc---eEEEE--eecCCCCccccccccccccCccccCccchhhhhccccCCccccccceeEEEEec--
Q 001085 21 QFHATQVAQLGENA---LMISV--VPLDVGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVST-- 93 (1160)
Q Consensus 21 qFhATQVPq~gwDk---LfVSi--Vp~DtGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVSm-- 93 (1160)
-+.|..+|...+.. -||.| .|...|....|| ++.-.+-+..|... ..|.- .....+.....+|-|--
T Consensus 27 v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT-~~~~~t~nP~wne~----f~f~~-~~~~~~~~~~l~i~V~d~d 100 (141)
T 1v27_A 27 ILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRT-KTVKKTLEPKWNQT----FIYSP-VHRREFRERMLEITLWDQA 100 (141)
T ss_dssp EEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBC-CCCSSCSSCCCCCC----CEECS-CCTTGGGTCEEEEEEEEBC
T ss_pred EEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeC-ccccCCCCCccccE----EEEcc-CCHHHhcCCEEEEEEEECC
Confidence 45677777654332 24433 343323444433 22223334455433 33310 11123345667777752
Q ss_pred CCC--cccccceeecchhhhhhhcCcceeeccccCCCCCc
Q 001085 94 GLS--KAGFVGEASIDFADYAEASKTSTVSLPLKYSRSKA 131 (1160)
Q Consensus 94 GSS--KSgiLGEasINlAdYaea~kp~tVSLPLK~cnsGt 131 (1160)
..+ +..+||++.|+|++.... ....-+||...+.|.
T Consensus 101 ~~~~~~~~~lG~~~i~l~~l~~~--~~~~W~~L~~~~~g~ 138 (141)
T 1v27_A 101 RVREEESEFLGEILIELETALLD--DEPHWYKLQTHDSGP 138 (141)
T ss_dssp SSSSCCBCCCEEEEEEGGGCCCS--SEEEEEECBCCSSCC
T ss_pred CCcCCCCceEEEEEEEccccCCC--CCCceEECcccccCC
Confidence 222 378999999999997643 366778888877763
No 83
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=40.24 E-value=57 Score=30.37 Aligned_cols=100 Identities=11% Similarity=0.208 Sum_probs=53.6
Q ss_pred eeeeecccccccc---ceEEEEeec-CCCCccccccccccccCccccCccchhhhhccccCCccccccceeEEEEec--C
Q 001085 21 QFHATQVAQLGEN---ALMISVVPL-DVGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVST--G 94 (1160)
Q Consensus 21 qFhATQVPq~gwD---kLfVSiVp~-DtGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVSm--G 94 (1160)
-+.|..+|...+. --||.|--. +.++...+.++..-.+-+..|...+ .| .......+.....+|-|-- .
T Consensus 35 v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f----~f-~~~~~~~~~~~~l~i~V~d~d~ 109 (142)
T 2chd_A 35 IIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETL----QY-HGITEEDMQRKTLRISVCDEDK 109 (142)
T ss_dssp EEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEE----EE-ESCCHHHHHHCEEEEEEEEECT
T ss_pred EEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEE----EE-cccCHHHccCCEEEEEEEECCC
Confidence 3577777764322 234433322 2222233333333334445555332 22 1122233445667777752 3
Q ss_pred CCcccccceeecchhhhhhhcCcceeeccccC
Q 001085 95 LSKAGFVGEASIDFADYAEASKTSTVSLPLKY 126 (1160)
Q Consensus 95 SSKSgiLGEasINlAdYaea~kp~tVSLPLK~ 126 (1160)
.++..+||++.|+|++... ..+....+||..
T Consensus 110 ~~~d~~iG~~~i~l~~l~~-~~~~~~~~~L~~ 140 (142)
T 2chd_A 110 FGHNEFIGETRFSLKKLKA-NQRKNFNICLER 140 (142)
T ss_dssp TSCEEEEEEEEEEGGGCCT-TCCEEEEEECBC
T ss_pred CCCCcEEEEEEEEHHHcCC-CCccEEEEeccc
Confidence 3466899999999999876 447777888764
No 84
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=39.03 E-value=1.6e+02 Score=26.36 Aligned_cols=55 Identities=18% Similarity=0.301 Sum_probs=31.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001085 717 LAEASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINN 775 (1160)
Q Consensus 717 ~~E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~ 775 (1160)
...+..+-.+.+..+.....+.+++..++. ||+.|.+.|+............|+.
T Consensus 19 ~~~~~~~e~~l~~~e~~~~~~E~ev~~L~k----Kiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 19 LDRAEQAEADKKAAEERSKQLEDELVALQK----KLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555666666666666666 6666666666555554444444443
No 85
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=39.01 E-value=1.6e+02 Score=27.20 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=32.2
Q ss_pred hhhhHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHH
Q 001085 707 DANEKVAMKALA-------EASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKE 772 (1160)
Q Consensus 707 eenE~~~~~A~~-------E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~e 772 (1160)
+.=|.-+.+|+. |+.+|+..|..|....+.+...-..+.. ....|..+.......+..|+-.
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~----en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELER----ENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 333444455555 6666777766666555554443333333 4555555555555555555443
No 86
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=38.88 E-value=3.6e+02 Score=31.10 Aligned_cols=53 Identities=13% Similarity=0.363 Sum_probs=34.1
Q ss_pred hhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 001085 847 NRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQC 899 (1160)
Q Consensus 847 ~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~ 899 (1160)
...-.+|+..|.-||.-+...+..|..|+..=+.--.-|..|-..|+.-+.-|
T Consensus 112 ~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C 164 (390)
T 1deq_A 112 KQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSC 164 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34456788889999988887777777776654444444555555555444444
No 87
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=38.55 E-value=5.2e+02 Score=29.93 Aligned_cols=83 Identities=24% Similarity=0.339 Sum_probs=48.6
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH-------HHHHHHHHHHH-----------------h
Q 001085 566 KDLSDSLAIINELETHIEGLASELKKQSREFSNFQATIKELESQ-------IEALGNELKEQ-----------------S 621 (1160)
Q Consensus 566 ~e~sdSl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~ee-------lq~s~~eLK~q-----------------~ 621 (1160)
.++++.+..|..+..+-+.|+.||+.....|..+...-+.|..+ ++.-..+|..+ .
T Consensus 119 ~d~gd~l~dv~~l~~khq~l~~EL~~~e~~i~~v~~~G~~Li~~~Hpas~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a 198 (450)
T 3r6n_A 119 YDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKEN 198 (450)
T ss_dssp CCCSTTCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcChhhHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445554555556666777777777766666666666555543 33333333322 3
Q ss_pred hhhhhHHHhHHHHHHHHHHHHHHHHHH
Q 001085 622 KGYSDSLATIKELEAYIKNLEEELEKQ 648 (1160)
Q Consensus 622 ~e~S~~l~~i~~Le~qv~sl~eel~~Q 648 (1160)
..|.-+..-+.++++-|...+.-|.+.
T Consensus 199 ~~~~QF~~Da~EaesWL~eke~~l~s~ 225 (450)
T 3r6n_A 199 AAYFQFFEEAQSTEAYLKGLQDSIRKK 225 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhccc
Confidence 455556666677777777777767655
No 88
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=37.22 E-value=1.2e+02 Score=27.96 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=48.5
Q ss_pred HHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Q 001085 860 VKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLKK 929 (1160)
Q Consensus 860 ~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~k 929 (1160)
+-+|.+....|=..+..-|+.-..+-.-|-..|+.|-.++.-|++-|.-=..-+.+++.+|-.|..+|++
T Consensus 7 mgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 7 MGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577788888888888888888888888888888888888888877777777778888888888777765
No 89
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=36.75 E-value=4.6e+02 Score=28.82 Aligned_cols=109 Identities=13% Similarity=0.179 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh----------hhhhHHHhHHHHHHHHHH
Q 001085 571 SLAIINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSK----------GYSDSLATIKELEAYIKN 640 (1160)
Q Consensus 571 Sl~~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~----------e~S~~l~~i~~Le~qv~s 640 (1160)
..++|+.+|.++..++.-|++-....+.+-.....+..-+++.-..|..... ....+|..+...-..|..
T Consensus 19 FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~v~~~l~~f~~~~~ei~~ 98 (385)
T 2q13_A 19 TRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSS 98 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCC---CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 3458999999999999888887777766665555554333333333333211 112333333333333444
Q ss_pred HHHHHHHHH--------HHHH-hhHHHHHHhhHHHHHHHHHHHHHHHH
Q 001085 641 LEEELEKQA--------QVYE-ADLEVVTRAKVEQEQRAIQAEETLRK 679 (1160)
Q Consensus 641 l~eel~~Qa--------q~f~-~dl~a~~~~k~eqE~rai~aEeaLrk 679 (1160)
.+..|..++ +.|. .|+..+...+...+.....-+.+|.|
T Consensus 99 ~~~~l~~~~~~~~~~PL~~f~~~di~~~ke~kk~fek~~~~yd~al~k 146 (385)
T 2q13_A 99 CHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINR 146 (385)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443333 3333 45666666666666666666666665
No 90
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=36.46 E-value=45 Score=31.10 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=38.0
Q ss_pred ceeEEEEec--CCCcccccceeecchhhhhhhcC-cceeeccccCCCCCceeeEeeeeecc
Q 001085 85 RIYNFIVST--GLSKAGFVGEASIDFADYAEASK-TSTVSLPLKYSRSKAVLHVSIQRVQE 142 (1160)
Q Consensus 85 kiYKfVVSm--GSSKSgiLGEasINlAdYaea~k-p~tVSLPLK~cnsGtVLHVtIQ~Lt~ 142 (1160)
....|.|-= ..++..+||++.|+|+++..... ....-+||+. .| -|||.|.+-++
T Consensus 77 ~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~--~G-~i~l~l~~~~~ 134 (136)
T 1gmi_A 77 RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EG-KVYVIIDLSGS 134 (136)
T ss_dssp CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--SC-EEEEEEEEEEE
T ss_pred CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC--Ce-EEEEEEEEEec
Confidence 455666642 24567799999999999987532 3466678864 34 57999887543
No 91
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=36.35 E-value=51 Score=32.74 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=40.4
Q ss_pred cceeEEEEec--CCCcccccceeecchhhhhhhcC----cceeeccccCCC----CCceeeEeeeeecc
Q 001085 84 ERIYNFIVST--GLSKAGFVGEASIDFADYAEASK----TSTVSLPLKYSR----SKAVLHVSIQRVQE 142 (1160)
Q Consensus 84 EkiYKfVVSm--GSSKSgiLGEasINlAdYaea~k----p~tVSLPLK~cn----sGtVLHVtIQ~Lt~ 142 (1160)
.....|.|-- ..++..+||++.|+|.++..... ...+.+||...+ ...-|+|.+.++.-
T Consensus 94 ~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~ 162 (173)
T 2nq3_A 94 VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL 162 (173)
T ss_dssp TCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred CCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence 4556677752 33467799999999999986432 336688887642 22447898888754
No 92
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=35.81 E-value=97 Score=28.98 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=27.5
Q ss_pred CcccccceeecchhhhhhhcCcceeeccccCC-----CCCceeeEeeee
Q 001085 96 SKAGFVGEASIDFADYAEASKTSTVSLPLKYS-----RSKAVLHVSIQR 139 (1160)
Q Consensus 96 SKSgiLGEasINlAdYaea~kp~tVSLPLK~c-----nsGtVLHVtIQ~ 139 (1160)
++..+||++.|+|.+.. .....-+||..- ..| -|||.|.+
T Consensus 101 ~~~~~lG~~~i~l~~l~---~~~~~w~~L~~~~~~~~~~G-~i~l~l~~ 145 (148)
T 3kwu_A 101 ESDDFLGQTIIEVRTLS---GEMDVWYNLDKRTDKSAVSG-AIRLHISV 145 (148)
T ss_dssp CSSEEEEEEEEEGGGCC---SEEEEEEECBCSSTTCCCCC-EEEEEEEE
T ss_pred CCCccEEEEEEEHHHCc---CCCCEEEEcccCCCCCCCce-EEEEEEEE
Confidence 68899999999999983 334456777632 234 55776654
No 93
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=35.57 E-value=60 Score=30.44 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=37.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001085 719 EASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINN 775 (1160)
Q Consensus 719 E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~ 775 (1160)
.++.|+.+|..||..|..+......-..+|..+|..|..+|......|++.+.+-+.
T Consensus 13 ~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~ 69 (95)
T 3mov_A 13 LYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQ 69 (95)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888999999999877777766667777777777776666666655555443
No 94
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=35.52 E-value=1.2e+02 Score=31.97 Aligned_cols=111 Identities=15% Similarity=0.246 Sum_probs=57.2
Q ss_pred eeeeecccccccc---ceEEEEeecCCCCccccccccccccCccccCccchhh-hhccccCCccccccceeEEEEec--C
Q 001085 21 QFHATQVAQLGEN---ALMISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYET-VKFVREPKSGKISERIYNFIVST--G 94 (1160)
Q Consensus 21 qFhATQVPq~gwD---kLfVSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyET-vkl~qD~kTkk~~EkiYKfVVSm--G 94 (1160)
-+.|..+|...+. --||.|.-..-|+...||. |..++ .+|+|.- ..|. .....+..+..+|.|.- .
T Consensus 26 v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~---v~~~t---~nP~wne~f~f~--v~~~~l~~~~L~~~V~d~d~ 97 (296)
T 1dqv_A 26 ILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTK---VHRKT---LNPIFNETFQFS--VPLAELAQRKLHFSVYDFDR 97 (296)
T ss_dssp EEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECC---CCCSC---SSCEEEEEEEEE--CCGGGGSSCCCEEEEEECCS
T ss_pred EEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCC---ccCCC---CCCcEeeEEEEE--ecHHHhcCCEEEEEEEEcCC
Confidence 4567777754322 2233332222345555443 22222 2454432 2221 12223344566777762 4
Q ss_pred CCcccccceeecc-hhhhhhhcCcceeeccccCC-----CCCceeeEeeeee
Q 001085 95 LSKAGFVGEASID-FADYAEASKTSTVSLPLKYS-----RSKAVLHVSIQRV 140 (1160)
Q Consensus 95 SSKSgiLGEasIN-lAdYaea~kp~tVSLPLK~c-----nsGtVLHVtIQ~L 140 (1160)
.++..+||++.|+ +.+..+...+...-+||... ..| -|+|.+.++
T Consensus 98 ~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G-~i~vsl~y~ 148 (296)
T 1dqv_A 98 FSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLG-ELNFSLCYL 148 (296)
T ss_dssp SSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCC-EEEEEEEEE
T ss_pred CCCCceEEEEEeccccccccCCccceeeeccccccccccccc-eEEEEEEec
Confidence 5678899999996 76766655555556666542 234 456666654
No 95
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=35.25 E-value=1.2e+02 Score=27.80 Aligned_cols=64 Identities=16% Similarity=0.261 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHH
Q 001085 577 ELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNLEE 643 (1160)
Q Consensus 577 ~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl~e 643 (1160)
.|+..+..+|.-...+ ...++.++..|+.+|+....++.+|..+|-+.+..=-.|+..|..-.+
T Consensus 14 ~Le~~l~e~E~~~~~~---l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRk 77 (86)
T 1x8y_A 14 AKEAKLRDLEDSLARE---RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRK 77 (86)
T ss_dssp THHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4566666666544332 446788899999999999999999999996666543367766654433
No 96
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=34.90 E-value=51 Score=30.51 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHhHHHHhHHHHHHHHHH
Q 001085 292 DIEIEKLKSELVALARQADLSELELQTLRKQIVKESKRAQDLSREVISLKEEKDLLKLDCEKLK 355 (1160)
Q Consensus 292 e~~iEkLKsE~~sL~Rqad~s~lELQtLRKQi~kEsKrgqdLs~EVs~Lk~ERD~LK~E~EqLK 355 (1160)
+++++.||.||+-|.+.+-...++|..|.-.+=---.+--+++.+.-..+.+-+.+|.++..+.
T Consensus 14 ~~di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~e 77 (81)
T 3csx_A 14 PEAVADLKKKVRKLNSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNIWE 77 (81)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999888777777777888888888888888888776654
No 97
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=34.13 E-value=3.4e+02 Score=26.44 Aligned_cols=84 Identities=21% Similarity=0.303 Sum_probs=41.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHH
Q 001085 719 EASELRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEI 798 (1160)
Q Consensus 719 E~seLr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~ei 798 (1160)
++..++..+.-||+-++.. +.+|+.+|..|..++.. -|+++.+|...-.|+. ..-.+...-|+...
T Consensus 21 qL~k~~~~r~~Le~~w~~k-------~E~~k~qV~~L~~~~q~----sE~~L~~Lqq~fsq~q---~~vq~qL~~Lt~~R 86 (112)
T 1x79_B 21 QLEKTMKDKQELEDFIKQS-------SEDSSHQISALVLRAQA----SEILLEELQQGLSQAK---RDVQEQMAVLMQSR 86 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3466777888888888877 77888888888876643 3445555544433331 11122223344444
Q ss_pred HHHHHhhhhhhhhhhhhh
Q 001085 799 QQLKADTEKLMMDNKSLS 816 (1160)
Q Consensus 799 q~l~~~~~~l~~e~~~l~ 816 (1160)
..+..++.+|..||+.|.
T Consensus 87 e~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 87 EQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp HHHHTC------------
T ss_pred HHHHHHHHHHHhhccchh
Confidence 444445555555555544
No 98
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=33.85 E-value=1.1e+02 Score=29.34 Aligned_cols=68 Identities=21% Similarity=0.341 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh-------------HHH-HHHHhHHHHhHHHHHHHHHHhhhh
Q 001085 294 EIEKLKSELVALARQADLSELELQTLRKQIVKESKRAQD-------------LSR-EVISLKEEKDLLKLDCEKLKTFQK 359 (1160)
Q Consensus 294 ~iEkLKsE~~sL~Rqad~s~lELQtLRKQi~kEsKrgqd-------------Ls~-EVs~Lk~ERD~LK~E~EqLKs~~k 359 (1160)
.+..|+.++..|++--+.+.-+...|.=++..-.-+|.- .+. -.-..+.+-+.|+.|||.||....
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666665555555555555555443333331 111 113467888888899999988665
Q ss_pred hh
Q 001085 360 RM 361 (1160)
Q Consensus 360 ~~ 361 (1160)
.+
T Consensus 93 ~l 94 (100)
T 1go4_E 93 AM 94 (100)
T ss_dssp TC
T ss_pred HH
Confidence 44
No 99
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=33.63 E-value=1.8e+02 Score=26.69 Aligned_cols=50 Identities=22% Similarity=0.139 Sum_probs=31.7
Q ss_pred HHHhhccChhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 001085 466 ELVKEHRDVKETYLLEQKIMDLYSEIEIYRRDKDELETQMEQLALDYEIL 515 (1160)
Q Consensus 466 ~l~ke~~d~kE~~~L~~KI~eL~~ele~y~~~~~eLe~k~eqL~~dye~L 515 (1160)
++++....++|...+..++..|...++.-...+.+|+.++.+|...+..|
T Consensus 5 PLL~~~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L 54 (89)
T 3bas_A 5 PLLSIARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDL 54 (89)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554445567777888888777777766677888888877776544444
No 100
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=32.77 E-value=43 Score=33.28 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=36.8
Q ss_pred eeEEEEec--CCCcccccceeecchhhhhhhc---CcceeeccccCCCCCceeeEeeee
Q 001085 86 IYNFIVST--GLSKAGFVGEASIDFADYAEAS---KTSTVSLPLKYSRSKAVLHVSIQR 139 (1160)
Q Consensus 86 iYKfVVSm--GSSKSgiLGEasINlAdYaea~---kp~tVSLPLK~cnsGtVLHVtIQ~ 139 (1160)
...|.|-= ..++..+||.++|+|.++.... .+...-+||.. +.-|||.|+.
T Consensus 100 ~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~---~G~i~l~l~~ 155 (157)
T 2fk9_A 100 HLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP---EGKVFVVITL 155 (157)
T ss_dssp EEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS---SCEEEEEEEE
T ss_pred EEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC---CcEEEEEEEE
Confidence 34455542 3356779999999999998762 56677899964 4567998875
No 101
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=31.46 E-value=39 Score=31.40 Aligned_cols=46 Identities=22% Similarity=0.305 Sum_probs=32.9
Q ss_pred ccceeEEEEec--CCCcccccceeecchhhhhhhcCcceeeccccCCCC
Q 001085 83 SERIYNFIVST--GLSKAGFVGEASIDFADYAEASKTSTVSLPLKYSRS 129 (1160)
Q Consensus 83 ~EkiYKfVVSm--GSSKSgiLGEasINlAdYaea~kp~tVSLPLK~cns 129 (1160)
.....+|-|-- ..++..+||++.|+|++... ..+...-+||.....
T Consensus 94 ~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~-~~~~~~W~~L~~~~~ 141 (142)
T 1rh8_A 94 MKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSH-LDNTPRWYPLKEQTE 141 (142)
T ss_dssp TTCEEEEEEEEECSSSCEEEEEEEEEETTSCGG-GTTCCEEEECBCCCC
T ss_pred cCCEEEEEEEECCCCCCCceEEEEEEecccccc-CCCCCeEEECCccCC
Confidence 44566666652 34577899999999998765 356677888887654
No 102
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=31.30 E-value=82 Score=27.31 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q 001085 481 EQKIMDLYSEIEIYRRDKDELETQMEQLALDYEILKQ 517 (1160)
Q Consensus 481 ~~KI~eL~~ele~y~~~~~eLe~k~eqL~~dye~LkQ 517 (1160)
++++.+|..+.+.+..++.+|+.++..|...+.-|++
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777888888888877766655544
No 103
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=30.92 E-value=49 Score=26.27 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001085 480 LEQKIMDLYSEIEIYRRDKDELETQMEQL 508 (1160)
Q Consensus 480 L~~KI~eL~~ele~y~~~~~eLe~k~eqL 508 (1160)
++.|+.....+|++.++++--|++++..|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 67888989999999999999999988765
No 104
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=30.46 E-value=4.9e+02 Score=27.20 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=23.8
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHH-hhhhhhhhhhhHHHHHH
Q 001085 566 KDLSDSLAIINELETHIEGLASELKK-QSREFSNFQATIKELES 608 (1160)
Q Consensus 566 ~e~sdSl~~I~~Le~qi~~LE~Ele~-Q~~~f~~~qst~e~L~e 608 (1160)
.++.+++..|..+..+.+.++.++.. ....+..+......|+.
T Consensus 136 ~~~g~d~~~v~~l~~~~~~f~~el~~~~~~~v~~l~~~~~~L~~ 179 (326)
T 3kbt_A 136 PEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLID 179 (326)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 44556666777777777777666654 33334444444444433
No 105
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=29.75 E-value=64 Score=35.18 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHHhHHHHhHHHHHHHHHHhh
Q 001085 313 ELELQTLRKQIVKESKRAQDLSREVISLKEEKDLLKLDCEKLKTF 357 (1160)
Q Consensus 313 ~lELQtLRKQi~kEsKrgqdLs~EVs~Lk~ERD~LK~E~EqLKs~ 357 (1160)
+-.+..|++++..-..+-.-|..++..++.|-..||.|+++|++-
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 334667888887777777778999999999999999999999864
No 106
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=29.62 E-value=1.5e+02 Score=28.41 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhHHH
Q 001085 791 SGALSLEIQQLKADTEKLMMDNKSLSEEA 819 (1160)
Q Consensus 791 ~~~~~~eiq~l~~~~~~l~~e~~~l~e~~ 819 (1160)
...+...|+.|.++++.|+.||..|..+.
T Consensus 60 ~~~~~~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 60 SKRLDARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677777777777777777766653
No 107
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=29.62 E-value=3.5e+02 Score=25.22 Aligned_cols=47 Identities=17% Similarity=0.295 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 001085 851 DELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKV 897 (1160)
Q Consensus 851 ~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~ 897 (1160)
..|...+.-++.+-...+.||..+-.-+..-+..|..++.+...|..
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 34444444555555555555555555555555555555555544443
No 108
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=29.23 E-value=3.4e+02 Score=30.47 Aligned_cols=80 Identities=16% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH---------------hhhhhhHHHhHHHHHHHH
Q 001085 574 IINELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQ---------------SKGYSDSLATIKELEAYI 638 (1160)
Q Consensus 574 ~I~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q---------------~~e~S~~l~~i~~Le~qv 638 (1160)
.+..++.+|..+=.+...+. +-.+-++.+..-..+.|+.-..+..| .++-|-..+.|++||++|
T Consensus 374 al~~~~~~i~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (471)
T 3mq9_A 374 ALKDAQTRITAARDGLRAVM-EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEI 452 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHH-HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHh
Q 001085 639 KNLEEELEKQAQVYEA 654 (1160)
Q Consensus 639 ~sl~eel~~Qaq~f~~ 654 (1160)
..|..+|..+.-....
T Consensus 453 ~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 453 TTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
No 109
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=29.17 E-value=1.5e+02 Score=27.03 Aligned_cols=49 Identities=20% Similarity=0.422 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHH
Q 001085 576 NELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQSKGYSDSLATIKELEAYIKNL 641 (1160)
Q Consensus 576 ~~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q~~e~S~~l~~i~~Le~qv~sl 641 (1160)
+.+|.+|.+||.-|+ .+|+-+--|..++..++.+||++ |..||.++...
T Consensus 3 ~dlEEKv~~LE~sld-------~LQTrfARLLaEy~ssQ~KLKqR----------it~LE~~~~~~ 51 (74)
T 3swf_A 3 MGLEEKVTRMESSVD-------LLQTRFARILAEYESMQQKLKQR----------LTKVEKFLKPL 51 (74)
T ss_dssp -CHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhccc
Confidence 457778888884444 46777778888888899999876 34566666553
No 110
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=29.11 E-value=1.8e+02 Score=27.93 Aligned_cols=58 Identities=22% Similarity=0.232 Sum_probs=47.9
Q ss_pred hhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001085 847 NRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQ 904 (1160)
Q Consensus 847 ~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~ 904 (1160)
++-..+|..++-.|.+..+...+|-++++.....-...|..|..||+.|+.....|+.
T Consensus 29 ~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 29 NMSKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777778888888888899999998888889999999999999998877753
No 111
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=28.96 E-value=49 Score=32.24 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=28.5
Q ss_pred ccccceeEEEEec--CCCcccccceeecchhhhhhhcCcceeeccc
Q 001085 81 KISERIYNFIVST--GLSKAGFVGEASIDFADYAEASKTSTVSLPL 124 (1160)
Q Consensus 81 k~~EkiYKfVVSm--GSSKSgiLGEasINlAdYaea~kp~tVSLPL 124 (1160)
.+..+..+|-|-- ..++..+||++.|+|+++.....+.+-=.||
T Consensus 108 ~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L 153 (155)
T 2z0u_A 108 ALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNL 153 (155)
T ss_dssp HHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEE
T ss_pred HhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEc
Confidence 4456667777762 3467889999999999985333333333333
No 112
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=28.78 E-value=74 Score=29.98 Aligned_cols=46 Identities=15% Similarity=0.121 Sum_probs=32.9
Q ss_pred ceeEEEEec--CCCcccccceeecchhhhhhhcCcceeeccccCCCCCce
Q 001085 85 RIYNFIVST--GLSKAGFVGEASIDFADYAEASKTSTVSLPLKYSRSKAV 132 (1160)
Q Consensus 85 kiYKfVVSm--GSSKSgiLGEasINlAdYaea~kp~tVSLPLK~cnsGtV 132 (1160)
...+|.|-- ..++..+||++.|+|++.... +..--+||....+|.+
T Consensus 98 ~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~--~~~~W~~L~~~~~g~~ 145 (149)
T 1a25_A 98 RRLSVEIWDWDLTSRNDFMGSLSFGISELQKA--GVDGWFKLLSQEEGEY 145 (149)
T ss_dssp CEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC--CEEEEEECBCHHHHTT
T ss_pred CEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC--ccCCeEEccCCCCCcc
Confidence 345666652 335678999999999999764 5666788887766654
No 113
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=28.43 E-value=3.9e+02 Score=26.05 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhhHHHHH
Q 001085 855 STIALVKKEAESSVEEVQ 872 (1160)
Q Consensus 855 ~~~~~~k~eae~~~~el~ 872 (1160)
.+|..|+.+++-+.....
T Consensus 62 E~I~vLkaQv~IY~~DF~ 79 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQ 79 (110)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 456666666666655443
No 114
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=28.36 E-value=71 Score=27.16 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=23.6
Q ss_pred cchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 001085 290 ASDIEIEKLKSELVALARQADLSELELQTLRKQI 323 (1160)
Q Consensus 290 Ase~~iEkLKsE~~sL~Rqad~s~lELQtLRKQi 323 (1160)
+...+++.||.|...|+.....+..+++.|+.++
T Consensus 16 p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456899999888777776666666666665544
No 115
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=28.02 E-value=87 Score=28.40 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHhHHHHhHHHHHHHHH
Q 001085 294 EIEKLKSELVALARQADLSELELQTLRKQIVKESKRAQDLSREVISLKEEKDLLKLDCEKL 354 (1160)
Q Consensus 294 ~iEkLKsE~~sL~Rqad~s~lELQtLRKQi~kEsKrgqdLs~EVs~Lk~ERD~LK~E~EqL 354 (1160)
+++.||.||+-|.+.|-...++|..|.-.+=.--.+--+++.+.-..+.+-+.+|.++-.|
T Consensus 4 di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~ 64 (71)
T 2js5_A 4 GAEELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTASL 64 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999998887766666666777888888888888888776554
No 116
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=27.81 E-value=8.6e+02 Score=29.16 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhHHHHHhhh---hhhHhhhHHHHHHHHHHHhh----hhhhhhhhhhhHHHHHHHhHHHHHH
Q 001085 766 IEQMLKEINNLSNQLEEQKK---HDEEDSGALSLEIQQLKADT----EKLMMDNKSLSEEAEQKESLRVELA 830 (1160)
Q Consensus 766 ~e~m~~el~~~s~ql~~~~~---~~~~~~~~~~~eiq~l~~~~----~~l~~e~~~l~e~~e~~e~~~~~~~ 830 (1160)
....+.+++....+.....+ ..+++...|.......+.-| ..|+.....+-++-..++.++.+.+
T Consensus 433 ~~~~~~~~~~~~~~Y~~~~~kg~~~~~vl~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~ 504 (592)
T 1f5n_A 433 YRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAK 504 (592)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544332 23345566655555544444 4455444444444444444444333
No 117
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=27.31 E-value=7.7e+02 Score=28.99 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHh
Q 001085 885 VELLKSELELLKVQC 899 (1160)
Q Consensus 885 ~~~l~se~~~l~~q~ 899 (1160)
|..|...+..+...|
T Consensus 184 i~~l~~~~~~~~~~~ 198 (464)
T 1m1j_B 184 IQKLENAIATQTDYC 198 (464)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 455555555555544
No 118
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=26.98 E-value=83 Score=28.82 Aligned_cols=49 Identities=12% Similarity=0.155 Sum_probs=33.9
Q ss_pred ceeEEEEec--CCCcccccceeecchhhhhhhcCcceeeccccCCCCCceeeE
Q 001085 85 RIYNFIVST--GLSKAGFVGEASIDFADYAEASKTSTVSLPLKYSRSKAVLHV 135 (1160)
Q Consensus 85 kiYKfVVSm--GSSKSgiLGEasINlAdYaea~kp~tVSLPLK~cnsGtVLHV 135 (1160)
+..+|-|-- ..++..+||++.|+|++.... +..--+||.....|-.-||
T Consensus 83 ~~l~i~v~d~d~~~~~~~iG~~~i~l~~l~~~--~~~~W~~L~~~~~g~~~~~ 133 (137)
T 3rdl_A 83 RRLSVEIWDWDRTTRNDFMGSLSFGVSELMKM--PASGWYKLLNQEEGEYYNV 133 (137)
T ss_dssp CEEEEEEEECCSSSCCEEEEEEEEEHHHHHHS--CEEEEEECBCHHHHTTCCC
T ss_pred CEEEEEEEECCCCCCCceEEEEEEeHHHhccC--ccCceEECcCccccccccC
Confidence 345666642 344678999999999999764 4666778877666655444
No 119
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=26.22 E-value=1.1e+02 Score=25.57 Aligned_cols=18 Identities=50% Similarity=0.654 Sum_probs=13.5
Q ss_pred HHHhHHHHHHHhhhhhhh
Q 001085 972 EIANLRERIKLLEGQIKS 989 (1160)
Q Consensus 972 ~~a~l~~~ik~~e~~ik~ 989 (1160)
-+|+||+.|-.||...-+
T Consensus 32 iianlrdeiarlenevas 49 (52)
T 3he5_B 32 IIANLRDEIARLENEVAS 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 378899999998876544
No 120
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=26.11 E-value=1.2e+02 Score=28.45 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=32.7
Q ss_pred cccccceeEEEEec--CCCcccccceeecchhhhhhhcCcceeeccccCC
Q 001085 80 GKISERIYNFIVST--GLSKAGFVGEASIDFADYAEASKTSTVSLPLKYS 127 (1160)
Q Consensus 80 kk~~EkiYKfVVSm--GSSKSgiLGEasINlAdYaea~kp~tVSLPLK~c 127 (1160)
..+..+...|.|-- ..++..+||++.|+|+++.- ..+...=.||...
T Consensus 85 ~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~-~~~~~~W~~L~~~ 133 (138)
T 1wfm_A 85 EELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSV-PLGAAQWGELKTS 133 (138)
T ss_dssp TSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSS-CTTCCEEEECCCC
T ss_pred HHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccC-cccccceeeCcCC
Confidence 34556677777762 34678899999999999742 3455566777664
No 121
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=25.92 E-value=3.9e+02 Score=24.54 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001085 478 YLLEQKIMDLYSEIEIYRRDKDELETQMEQLA 509 (1160)
Q Consensus 478 ~~L~~KI~eL~~ele~y~~~~~eLe~k~eqL~ 509 (1160)
..+..++.++..+|...+.....++.++.++.
T Consensus 6 ~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~ 37 (112)
T 1l8d_A 6 EELETKKTTIEEERNEITQRIGELKNKIGDLK 37 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444445555555554
No 122
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=25.72 E-value=2.3e+02 Score=29.28 Aligned_cols=58 Identities=14% Similarity=0.163 Sum_probs=38.9
Q ss_pred ccccceeEEEEec--CCCcccccceeecchhhhhhhcCcceeeccccCC------CCCceeeEeeeee
Q 001085 81 KISERIYNFIVST--GLSKAGFVGEASIDFADYAEASKTSTVSLPLKYS------RSKAVLHVSIQRV 140 (1160)
Q Consensus 81 k~~EkiYKfVVSm--GSSKSgiLGEasINlAdYaea~kp~tVSLPLK~c------nsGtVLHVtIQ~L 140 (1160)
.+.....+|.|.- ..++..+||++.|+|++... ..+...-+||... ..| -+++.+.+.
T Consensus 81 ~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~-~~~~~~w~~L~~~~~~~~~~~G-~i~l~l~~~ 146 (284)
T 2r83_A 81 ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF-GHVTEEWRDLQSAEKEEQEKLG-DICFSLRYV 146 (284)
T ss_dssp GCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCC-SSCEEEEEECBCCSSCCCCCCC-EEEEEEEEE
T ss_pred HhCcCEEEEEEEECCCCCCCceeEEEEEcchhccc-CCcceeEEEeeccccccccccc-cEEEEEEec
Confidence 3445667777762 34578899999999999865 3455666788643 234 467776664
No 123
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=24.82 E-value=94 Score=28.92 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=29.7
Q ss_pred cccceeEEEEec--CCCcccccceeecchhhhhhhcCcceeecccc
Q 001085 82 ISERIYNFIVST--GLSKAGFVGEASIDFADYAEASKTSTVSLPLK 125 (1160)
Q Consensus 82 ~~EkiYKfVVSm--GSSKSgiLGEasINlAdYaea~kp~tVSLPLK 125 (1160)
+.....+|.|-- ..++..+||++.|+|+++.. ..+...-+||.
T Consensus 97 l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~-~~~~~~W~~L~ 141 (143)
T 3f04_A 97 LGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF-GHVTEEWRDLQ 141 (143)
T ss_dssp HTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCT-TSCEEEEEECB
T ss_pred cCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccC-CCCcceEEECc
Confidence 334667777763 33477899999999999865 34555666665
No 124
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.65 E-value=2.1e+02 Score=26.66 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=30.7
Q ss_pred ccccceeEEEEec--CCCcccccceeecchhhhhhhcCcceeeccccCC
Q 001085 81 KISERIYNFIVST--GLSKAGFVGEASIDFADYAEASKTSTVSLPLKYS 127 (1160)
Q Consensus 81 k~~EkiYKfVVSm--GSSKSgiLGEasINlAdYaea~kp~tVSLPLK~c 127 (1160)
.+..+..+|-|-- ..++..+||++.|+|++.... .+...-.||...
T Consensus 95 ~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~~w~~L~~~ 142 (147)
T 2enp_A 95 EAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLV-KGGHWWKALIPS 142 (147)
T ss_dssp HHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTT-TCCCEEECCBCC
T ss_pred HhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCC-CCccEEEEeecC
Confidence 3445567777762 345677999999999988543 344556677653
No 125
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=24.05 E-value=91 Score=30.74 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=27.2
Q ss_pred hhhhhHhhhHHHHHHHHHHHhhhhhhhhhh-hhhHH
Q 001085 784 KKHDEEDSGALSLEIQQLKADTEKLMMDNK-SLSEE 818 (1160)
Q Consensus 784 ~~~~~~~~~~~~~eiq~l~~~~~~l~~e~~-~l~e~ 818 (1160)
.+-+.+.+..|..||..|.++|+.|..-.. .|+.+
T Consensus 31 ~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~~lske 66 (123)
T 2lf0_A 31 LVEAADKYAELEKEKATLEAEIARLREVHSQKLSKE 66 (123)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 455667789999999999999999887655 45554
No 126
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=24.02 E-value=2.3e+02 Score=25.64 Aligned_cols=87 Identities=15% Similarity=0.200 Sum_probs=42.8
Q ss_pred eeeeecccccccc---ceE--EEEeecCCCCccccccccccccCccccCccchhhhhccccCCccccccceeEEEEec--
Q 001085 21 QFHATQVAQLGEN---ALM--ISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFIVST-- 93 (1160)
Q Consensus 21 qFhATQVPq~gwD---kLf--VSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfVVSm-- 93 (1160)
-+.|..+|..... --| |++.|...|....||. +.-.+-+..|.. +..|.- ...........+|-|--
T Consensus 24 v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~-v~~~t~nP~wne----~f~f~~-~~~~~~~~~~l~~~V~d~d 97 (129)
T 2bwq_A 24 ILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTK-TVKKTLEPKWNQ----TFIYSP-VHRREFRERMLEITLWDQA 97 (129)
T ss_dssp EEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECC-CCSSBSSCEEEE----EEEECS-CCGGGGGGCEEEEEEEEC-
T ss_pred EEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecc-cccCCCCCcccc----EEEEcc-CCHHHhcCCeEEEEEEECC
Confidence 4567777764322 223 3455543344443332 222333344443 333320 11123345566777752
Q ss_pred CCC--cccccceeecchhhhhh
Q 001085 94 GLS--KAGFVGEASIDFADYAE 113 (1160)
Q Consensus 94 GSS--KSgiLGEasINlAdYae 113 (1160)
..+ +..+||++.|+|++...
T Consensus 98 ~~~~~~~~~lG~~~i~l~~l~~ 119 (129)
T 2bwq_A 98 RVREEESEFLGEILIELETALL 119 (129)
T ss_dssp ------CEEEEEEEEEGGGCCC
T ss_pred cCcCcCCceeEEEEEEccccCC
Confidence 222 37899999999998654
No 127
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.73 E-value=62 Score=27.50 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=22.9
Q ss_pred HhhhHHHHHHHHHHHhhhhhhhhhhhhhHHHH
Q 001085 789 EDSGALSLEIQQLKADTEKLMMDNKSLSEEAE 820 (1160)
Q Consensus 789 ~~~~~~~~eiq~l~~~~~~l~~e~~~l~e~~e 820 (1160)
....++..|++.|+++++.|+.++..|..+++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45577888888888888877777666665544
No 128
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=23.56 E-value=1.7e+02 Score=26.56 Aligned_cols=25 Identities=12% Similarity=0.223 Sum_probs=12.5
Q ss_pred hHHHHHHHHHhhhhhhhHHHHHHHH
Q 001085 836 VKEYELLIQRANRERDELESTIALV 860 (1160)
Q Consensus 836 ~~~~~~~~~~~~~e~~~l~~~~~~~ 860 (1160)
+.+.+..|+....++......|..+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eL 45 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDEL 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554444444433
No 129
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=23.54 E-value=1.4e+02 Score=26.78 Aligned_cols=85 Identities=14% Similarity=0.190 Sum_probs=53.8
Q ss_pred ccceEEEEEeee-eeccccccccceEEEEeecCCCCccccccccccccCccccCccchhhhhccccCCccccccceeEEE
Q 001085 12 NKIKAVFKLQFH-ATQVAQLGENALMISVVPLDVGKPTVRLEKAAIEDGCCRWLNSVYETVKFVREPKSGKISERIYNFI 90 (1160)
Q Consensus 12 ~kiKvvFKLqFh-ATQVPq~gwDkLfVSiVp~DtGKtTaKteKAaVrnG~C~W~dpIyETvkl~qD~kTkk~~EkiYKfV 90 (1160)
.+..|-||.-.. +.--|. .-..+.|.|+ .-.|+.+.+.......+|.+... ..|..++.+|. |++.
T Consensus 15 PGetV~~~~~~~~~~~~p~-~~~~~~v~l~-dp~g~~v~~~~~~~~~~G~~~~~------f~Lp~~~~~G~-----y~i~ 81 (102)
T 2p9r_A 15 PGQTVKFRVVSMDENFHPL-NELIPLVYIQ-DPKGNRIAQWQSFQLEGGLKQFS------FPLSSEPFQGS-----YKVV 81 (102)
T ss_dssp TTCEEEEEEEEECGGGCBC-CCEEEEEEEE-CTTSCEEEEEEEEECBTTEEEEE------EECCSSCCCEE-----EEEE
T ss_pred CCCEEEEEEEEECCCCcCC-CCCceEEEEE-CCCCCEEEEEEeecCCCCEEEEE------EECCCCCCCee-----EEEE
Confidence 366777776322 222343 2223456665 44678877766666678887654 34566677887 7899
Q ss_pred EecCCCcccccceeecchhhhh
Q 001085 91 VSTGLSKAGFVGEASIDFADYA 112 (1160)
Q Consensus 91 VSmGSSKSgiLGEasINlAdYa 112 (1160)
|.+|. |..+..++...+|+
T Consensus 82 ~~~~~---~~~~~~~F~Veeyv 100 (102)
T 2p9r_A 82 VQKKS---GGRTEHPFTVEEFV 100 (102)
T ss_dssp EECTT---SCEEEEEEEECCCS
T ss_pred EEECC---CCeEEEEEEEEEEc
Confidence 98875 33678888888875
No 130
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=23.39 E-value=2e+02 Score=26.21 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 001085 728 RHLEEMINKASEEALSLRDDYETKLCQLSNQLNVKTDQIEQMLKEIN 774 (1160)
Q Consensus 728 ~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~~~~~~e~m~~el~ 774 (1160)
..|+..|++..++|+.-.. .|.+|..+|+.+...|..+-.+|+
T Consensus 22 ~eLq~~L~~K~eELr~kd~----~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDA----LIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888777776555 677777777777776666555554
No 131
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=23.24 E-value=2.3e+02 Score=26.09 Aligned_cols=80 Identities=19% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-------------------------hhhhhhHHHhHHH---
Q 001085 582 IEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQ-------------------------SKGYSDSLATIKE--- 633 (1160)
Q Consensus 582 i~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q-------------------------~~e~S~~l~~i~~--- 633 (1160)
|..+..++......|..++..+..+..+++.....++.- .....++...|+.
T Consensus 1 m~~~~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e 80 (117)
T 2zqm_A 1 MQNIPPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIE 80 (117)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHH
Q ss_pred -HHHHHHHHH---HHHHHHHHHHHhhHHHHHH
Q 001085 634 -LEAYIKNLE---EELEKQAQVYEADLEVVTR 661 (1160)
Q Consensus 634 -Le~qv~sl~---eel~~Qaq~f~~dl~a~~~ 661 (1160)
++..|..|+ +.+.++...+...+.+++.
T Consensus 81 ~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 81 TLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 132
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=22.74 E-value=4.7e+02 Score=24.36 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=11.3
Q ss_pred HHHHHHhhhhhhhhhhhhhHHH
Q 001085 798 IQQLKADTEKLMMDNKSLSEEA 819 (1160)
Q Consensus 798 iq~l~~~~~~l~~e~~~l~e~~ 819 (1160)
+..|.+++.+|..+-..|..++
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL 27 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQEL 27 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555543
No 133
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=22.38 E-value=1.6e+02 Score=24.70 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 001085 577 ELETHIEGLASELKKQSREFSNFQATIKELESQIEALGNELKEQ 620 (1160)
Q Consensus 577 ~Le~qi~~LE~Ele~Q~~~f~~~qst~e~L~eelq~s~~eLK~q 620 (1160)
++|.+|.+||.-|+ .+|+-+--|..|+..++.+||++
T Consensus 2 dlEekv~~Le~~ld-------~LqTr~ArLlae~~ssq~KlKqR 38 (46)
T 3swy_A 2 ALEEKVEQLGSSLD-------TLQTRFARLLAEYNATQMKMKQR 38 (46)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777774444 45677777888888888999887
No 134
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=21.72 E-value=2.3e+02 Score=26.49 Aligned_cols=46 Identities=26% Similarity=0.413 Sum_probs=31.9
Q ss_pred cccccceeEEEEec--CCCcccccceeecchhhhhhhcCcceeeccccC
Q 001085 80 GKISERIYNFIVST--GLSKAGFVGEASIDFADYAEASKTSTVSLPLKY 126 (1160)
Q Consensus 80 kk~~EkiYKfVVSm--GSSKSgiLGEasINlAdYaea~kp~tVSLPLK~ 126 (1160)
..+..+..+|-|-- ..++..+||++.|+|+++... .+..--+||..
T Consensus 87 ~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~~W~~L~~ 134 (148)
T 3fdw_A 87 SLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLD-KKLDHCLPLHG 134 (148)
T ss_dssp TTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHH-CCSEEEEECBC
T ss_pred hHhCceEEEEEEEECCCCcCCcEEEEEEEEccccccc-CCccceEECcC
Confidence 34455667777752 334678999999999998653 45566777765
No 135
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=21.60 E-value=1.6e+02 Score=25.04 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 001085 482 QKIMDLYSEIEIYRRDKDELETQMEQLALDYEIL 515 (1160)
Q Consensus 482 ~KI~eL~~ele~y~~~~~eLe~k~eqL~~dye~L 515 (1160)
+.+.+|..+.+.+..++..|...+..|...+..|
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555566665555554443333
No 136
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=21.45 E-value=2.9e+02 Score=31.63 Aligned_cols=60 Identities=25% Similarity=0.318 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhh-hhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhc
Q 001085 885 VELLKSELELLKVQCHNLKQALVE-DESEKEKLRKQAFQLKGDLKKKEDALNSLEKKLKDS 944 (1160)
Q Consensus 885 ~~~l~se~~~l~~q~~~lk~~l~~-~e~eke~l~kqv~~lk~~l~kke~~~~~~ek~~~~s 944 (1160)
-+.++.+++.|+++.+.+-..+-. ...+.+.|+.++.+|+.+++.-+..+..++.++.+-
T Consensus 37 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 37 VQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666555542 223456788888889999988888888888888654
No 137
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=21.10 E-value=1.1e+02 Score=28.79 Aligned_cols=65 Identities=23% Similarity=0.280 Sum_probs=31.4
Q ss_pred ccchHHHHHHHHHHHHHHH-------hhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHhHHHHhHHHHHHHHH
Q 001085 289 QASDIEIEKLKSELVALAR-------QADLSELELQTLRKQIVKESKRAQDLSREVISLKEEKDLLKLDCEKL 354 (1160)
Q Consensus 289 eAse~~iEkLKsE~~sL~R-------qad~s~lELQtLRKQi~kEsKrgqdLs~EVs~Lk~ERD~LK~E~EqL 354 (1160)
+-+.+.|..||.-=..|.. ....+ .+...|-.+....-..-..|..|.+.+..|+|.+|+.|+.|
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~-~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRV-QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677777766555552 11111 11122222222222333455666666666666666666654
No 138
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.70 E-value=1.2e+02 Score=27.16 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhhhhhhhhh
Q 001085 794 LSLEIQQLKADTEKLMMDNK 813 (1160)
Q Consensus 794 ~~~eiq~l~~~~~~l~~e~~ 813 (1160)
+..+++.|+..|..|..|+.
T Consensus 48 l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 48 TTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554443
No 139
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=20.65 E-value=5.6e+02 Score=24.42 Aligned_cols=92 Identities=15% Similarity=0.257 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhhhhhHHHHHHhhhHHHHHHHHhhhhcccccccCcccchHHhhhhhcCCCCCchHhHHHHHHHHhhccCh
Q 001085 395 NANLRLQLQKTQESNAELILAVQDLDEMLEQKNREISNHSNKSGSYVNAKELRRNISKSQTDDDEDQKALEELVKEHRDV 474 (1160)
Q Consensus 395 NaNL~LQLqKTQESN~ELvlaVqDLEEmLEQk~~EIs~Ls~~~~~~~n~~e~~~~l~~~etddde~q~~l~~l~ke~~d~ 474 (1160)
||...-||..++.++.|+.....+|+.-+++-+.++.. +-....
T Consensus 10 ~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~------------------------------------k~~eq~ 53 (107)
T 2no2_A 10 NAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQR------------------------------------KTQEQL 53 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------HHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------HHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcch
Q 001085 475 KETYLLEQKIMDLYSEIEIYRRDKDELETQMEQLALDYEILKQENHDI 522 (1160)
Q Consensus 475 kE~~~L~~KI~eL~~ele~y~~~~~eLe~k~eqL~~dye~LkQEN~di 522 (1160)
..++.|++-|..=+.++..++...+.+..-..+|.-.+..+..|...+
T Consensus 54 ~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 54 EVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 140
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=20.32 E-value=3.2e+02 Score=25.88 Aligned_cols=52 Identities=23% Similarity=0.346 Sum_probs=33.3
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHhhhhhh
Q 001085 874 IQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQLKGDLK 928 (1160)
Q Consensus 874 ~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~lk~~l~ 928 (1160)
+++.-.+=+.-...|+.++..|..++++|+ + =.+.+..+---....|..-|+
T Consensus 11 lr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~-s--WqDqkr~kFee~fe~l~s~l~ 62 (94)
T 3fx7_A 11 VREFVGHLERFKELLREEVNSLSNHFHNLE-S--WRDARRDKFSEVLDNLKSTFN 62 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-S--CCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc-h--HhhHHHHHHHHHHHHHHHHHH
Confidence 344444555667889999999999999996 4 444555554444444444433
No 141
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=20.32 E-value=7.5e+02 Score=27.58 Aligned_cols=149 Identities=13% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHh
Q 001085 844 QRANRERDELESTIALVKKEAESSVEEVQRIQRIEDEKEAAVELLKSELELLKVQCHNLKQALVEDESEKEKLRKQAFQL 923 (1160)
Q Consensus 844 ~~~~~e~~~l~~~~~~~k~eae~~~~el~~~~~~kdeke~~~~~l~se~~~l~~q~~~lk~~l~~~e~eke~l~kqv~~l 923 (1160)
.....-+..|...+......++..+++|...+. .|......|+.-.+.|...|..+....+.|+++|.++
T Consensus 119 ~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~----------~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l 188 (346)
T 2nrj_A 119 ETLKEGITDLRGEIQQNQKYAQQLIEELTKLRD----------SIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEV 188 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHH
Q ss_pred hhhhhhhHHHHHHHHHhhhhccccCccCcCccccccCCCCCCCCCChhHHHhHHHHHHHhhhhhhhHHHHHhhcchhhHH
Q 001085 924 KGDLKKKEDALNSLEKKLKDSNRRASVSDGTRTTLRNNKSAPVSQGSKEIANLRERIKLLEGQIKSKEIALEASTNSFVE 1003 (1160)
Q Consensus 924 k~~l~kke~~~~~~ek~~~~s~~~~~~~~~t~~~~~n~~~~~~~~~s~~~a~l~~~ik~~e~~ik~~~~a~~~s~~~~~~ 1003 (1160)
..+++ .-.++. .|....--|+-.-.-=.-++-+.--.++++.+.++|+.|..+|+.+.+..-.-+..+
T Consensus 189 ~~~I~-~~~~~i---------~~~~~~~~g~~i~~~i~Ggi~a~~a~k~~~~~~~ei~~l~~~i~~~~~l~~~l~~~~-- 256 (346)
T 2nrj_A 189 LGSVN-YYKQLE---------SDGFNVMKGAILGLPIIGGIIVGVARDNLGKLEPLLAELRQTVDYKVTLNRVVGVAY-- 256 (346)
T ss_dssp TGGGC-GGGCCC-----------CCGGGTSCEEEEEETTTEEEEEEGGGHHHHHHHHHHHHSCCCHHHHHHHHHHHHH--
T ss_pred HHHHH-HHHHHH---------hccccccccceehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred HhhhhhhHHHHHHHHHH
Q 001085 1004 KEKDLKNKIEELECRVE 1020 (1160)
Q Consensus 1004 ke~~l~~~i~e~~~~~~ 1020 (1160)
+.+..+-..+.
T Consensus 257 ------~~~~~l~~~I~ 267 (346)
T 2nrj_A 257 ------SNINEMHKALD 267 (346)
T ss_dssp ------HHHHHHHHHHH
T ss_pred ------HHHHHHHHHHH
No 142
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=20.11 E-value=1.2e+02 Score=26.03 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 001085 481 EQKIMDLYSEIEIYRRDKDELETQMEQLALDYEIL 515 (1160)
Q Consensus 481 ~~KI~eL~~ele~y~~~~~eLe~k~eqL~~dye~L 515 (1160)
++.|.+|..+.+.+..++..|...+..|...+..|
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666655443333
No 143
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=20.01 E-value=6.1e+02 Score=24.66 Aligned_cols=91 Identities=16% Similarity=0.197 Sum_probs=46.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhh----hhHHHHHHHHHHHHHhHHHHHhhhhhhHhhhHHHHHH
Q 001085 723 LRMQKRHLEEMINKASEEALSLRDDYETKLCQLSNQLNV----KTDQIEQMLKEINNLSNQLEEQKKHDEEDSGALSLEI 798 (1160)
Q Consensus 723 Lr~~~~~LEe~L~~a~~el~~~~~~~e~Ki~~L~~qL~~----~~~~~e~m~~el~~~s~ql~~~~~~~~~~~~~~~~ei 798 (1160)
.|.|-.+|..++.-++++|..+.++.. +|...++. -..++.-+...++..-..|..++..=....++...+.
T Consensus 4 t~~~~~~lq~~~~ql~~qL~k~~~~r~----~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL 79 (112)
T 1x79_B 4 TRDQVKKLQLMLRQANDQLEKTMKDKQ----ELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQM 79 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566665555555555444222 22223333 3334444444555555566666666666667777777
Q ss_pred HHHHHhhhhhhhhhhhhhH
Q 001085 799 QQLKADTEKLMMDNKSLSE 817 (1160)
Q Consensus 799 q~l~~~~~~l~~e~~~l~e 817 (1160)
+.|...-+.+..+...|-.
T Consensus 80 ~~Lt~~Re~V~~eL~rLQ~ 98 (112)
T 1x79_B 80 AVLMQSREQVSEELVRLQK 98 (112)
T ss_dssp HHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7776666666655555544
Done!