BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001086
(1159 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q869W0|HBX2_DICDI Homeobox protein 2 OS=Dictyostelium discoideum GN=hbx2 PE=2 SV=1
Length = 942
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 2 EVKRKTPL---QAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58
E KR+T L QA L F+ + YPTK + E LA L ++Y V TWF K R++K
Sbjct: 485 EKKRRTRLKKEQADILKTFFDNDDYPTKDDKETLANRLGMSYCAVTTWFSNK-RQEKKRR 543
Query: 59 GIVIP 63
G V P
Sbjct: 544 GDVAP 548
>sp|Q90XW6|IRX4A_XENLA Iroquois-class homeodomain protein irx-4-A OS=Xenopus laevis
GN=irx4-a PE=2 SV=1
Length = 496
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%)
Query: 5 RKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGIVIP 63
R+T KA L+ + + YPTK E LA +T QV TWF RRR K +N + P
Sbjct: 150 RETTSTLKAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWP 208
>sp|B7ZRT8|IRX4B_XENLA Iroquois-class homeodomain protein irx-4-B OS=Xenopus laevis
GN=irx4-b PE=2 SV=1
Length = 495
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%)
Query: 5 RKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGIVIP 63
R+T KA L+ + + YPTK E LA +T QV TWF RRR K +N + P
Sbjct: 150 RETTSTLKAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWP 208
>sp|Q688D0|IRX4_XENTR Iroquois-class homeodomain protein irx-4 OS=Xenopus tropicalis
GN=irx4 PE=2 SV=1
Length = 496
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%)
Query: 5 RKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGIVIP 63
R+T KA L+ + + YPTK E LA +T QV TWF RRR K +N + P
Sbjct: 150 RETTSTLKAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWP 208
>sp|Q9YGS0|IRX4_CHICK Iroquois-class homeodomain protein IRX-4 OS=Gallus gallus GN=IRX4
PE=2 SV=1
Length = 485
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 31/61 (50%)
Query: 3 VKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGIVI 62
R+T KA L+ + + YPTK E LA +T QV TWF RRR K +N +
Sbjct: 148 ATRETTSTLKAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTW 207
Query: 63 P 63
P
Sbjct: 208 P 208
>sp|Q9QY61|IRX4_MOUSE Iroquois-class homeodomain protein IRX-4 OS=Mus musculus GN=Irx4
PE=2 SV=1
Length = 515
Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 31/61 (50%)
Query: 3 VKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGIVI 62
R+T KA L+ + + YPTK E LA +T QV TWF RRR K +N +
Sbjct: 150 ATRETTSTLKAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTW 209
Query: 63 P 63
P
Sbjct: 210 P 210
>sp|P78413|IRX4_HUMAN Iroquois-class homeodomain protein IRX-4 OS=Homo sapiens GN=IRX4
PE=2 SV=2
Length = 519
Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 31/61 (50%)
Query: 3 VKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGIVI 62
R+T KA L+ + + YPTK E LA +T QV TWF RRR K +N +
Sbjct: 149 ATRETTSTLKAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTW 208
Query: 63 P 63
P
Sbjct: 209 P 209
>sp|Q9FVI6|FWA_ARATH Homeobox-leucine zipper protein HDG6 OS=Arabidopsis thaliana
GN=HDG6 PE=1 SV=2
Length = 686
Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 5 RKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58
R+T Q + L FY E +PT+ + L L++ QV+ WF KR +K +N
Sbjct: 46 RRTAYQTQELENFYMENPHPTEEQRYELGQRLNMGVNQVKNWFQNKRNLEKINN 99
>sp|Q8SUB7|HD1_ENCCU Homeobox protein HD-1 OS=Encephalitozoon cuniculi (strain GB-M1)
GN=HD-1 PE=4 SV=1
Length = 157
Score = 40.8 bits (94), Expect = 0.063, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 1 MEVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNG 59
++ +R +AL + + ++YP+++E LA L+ KQ+ WF KR R KG G
Sbjct: 95 IKSRRFPKFITEALERSFEIDQYPSEAEKARLAKICKLSTKQINNWFTNKRNRTKGHEG 153
>sp|Q708A1|MATA1_KLUDE Mating-type protein A1 OS=Kluyveromyces delphensis GN=MATA1 PE=3
SV=1
Length = 122
Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 14 LLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKG 56
L K Y +++Y TK E E +A +LT QVR WF KR R+K
Sbjct: 77 LNKVYEQKQYLTKEEREFVAKKCNLTPLQVRVWFANKRIRNKN 119
>sp|Q54ST3|Y2237_DICDI DDT domain-containing protein DDB_G0282237 OS=Dictyostelium
discoideum GN=DDB_G0282237 PE=3 SV=1
Length = 885
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 773 DAKATEVSTDLHPMQSIYLGSDRRYNRYWLFLG-PCNEYDPGHKRVYFESSEDGHWEVID 831
D K + ST L LG DR Y YW + P ++Y E+ E+G WE
Sbjct: 764 DEKLEKYSTRLES-----LGRDRNYRNYWYWYQLPS--------KIYVEN-ENGGWEYYS 809
Query: 832 TEEALRALLSVLDDRGRQEALLIESLEKREAFLCQAM 868
+++ L L+ LD+RG +E L+ +++ + F+ +
Sbjct: 810 SKKELDDLIKYLDNRGIRERKLLFNIKPKYDFIVSQL 846
>sp|O42261|IRX3_XENLA Iroquois-class homeodomain protein irx-3 OS=Xenopus laevis GN=irx3
PE=2 SV=2
Length = 448
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 12 KALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGIV 61
KA L + + YPTK E LA +T QV TWF RRR K +N +
Sbjct: 124 KAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 173
>sp|Q8BG99|PKNX2_MOUSE Homeobox protein PKNOX2 OS=Mus musculus GN=Pknox2 PE=2 SV=1
Length = 474
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 23 YPTKSEMEGLAAALDLTYKQVRTWFIEKRRR---DKGDNGIVIPSSSSKKLKGFH 74
YPT+ E +AA +LT QV WFI RRR D P+ +KK+K H
Sbjct: 315 YPTEDEKRQIAAQTNLTLLQVNNWFINARRRILQPMLDASNPDPAPKAKKIKSQH 369
>sp|Q66IK1|IRX2_XENTR Iroquois-class homeodomain protein irx-2 OS=Xenopus tropicalis
GN=irx2 PE=2 SV=1
Length = 456
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 12 KALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGIV 61
KA L+ + + YPTK E LA +T QV TWF RRR K +N +
Sbjct: 126 KAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 175
>sp|Q96KN3|PKNX2_HUMAN Homeobox protein PKNOX2 OS=Homo sapiens GN=PKNOX2 PE=1 SV=2
Length = 472
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 23 YPTKSEMEGLAAALDLTYKQVRTWFIEKRRR---DKGDNGIVIPSSSSKKLKGFH 74
YPT+ E +AA +LT QV WFI RRR D P+ +KK+K H
Sbjct: 315 YPTEDEKRQIAAQTNLTLLQVNNWFINARRRILQPMLDASNPDPAPKAKKIKSQH 369
>sp|Q6F2E3|IRX1_XENTR Iroquois-class homeodomain protein irx-1 OS=Xenopus tropicalis
GN=irx1 PE=2 SV=1
Length = 467
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 12 KALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGIV 61
KA L + + YPTK E LA +T QV TWF RRR K +N +
Sbjct: 142 KAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKVT 191
>sp|Q2TAQ8|IRX1B_XENLA Iroquois-class homeodomain protein irx-1-B OS=Xenopus laevis
GN=irx1-b PE=2 SV=1
Length = 462
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 12 KALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGIV 61
KA L + + YPTK E LA +T QV TWF RRR K +N +
Sbjct: 137 KAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKVT 186
>sp|Q61321|SIX4_MOUSE Homeobox protein SIX4 OS=Mus musculus GN=Six4 PE=2 SV=1
Length = 775
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 12 KALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDK 55
AL + Y + +YP+ +E LA L+ QV WF +R+RD+
Sbjct: 229 NALKELYKQNRYPSPAEKRHLAKITGLSLTQVSNWFKNRRQRDR 272
>sp|P81067|IRX3_MOUSE Iroquois-class homeodomain protein IRX-3 OS=Mus musculus GN=Irx3
PE=1 SV=2
Length = 507
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 12 KALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGIV 61
KA L + + YPTK E LA +T QV TWF RRR K +N +
Sbjct: 146 KAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 195
>sp|Q708A7|MATA1_CANGA Mating-type-like protein A1 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=MTL1A1
PE=2 SV=2
Length = 130
Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 6 KTPLQAKA---LLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58
+ PL AKA L++ +S+++Y T+ E LA +T QV+ WF +R+R K N
Sbjct: 72 RKPLPAKAKLQLVETFSKKRYLTRCEKHQLAVQCGITTNQVQIWFANRRKRSKDLN 127
>sp|Q6DCQ1|IRX2_XENLA Iroquois-class homeodomain protein irx-2 OS=Xenopus laevis GN=irx2
PE=2 SV=1
Length = 455
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 12 KALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGIV 61
KA L+ + + YPTK E LA +T QV TWF RRR K +N +
Sbjct: 126 KAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 175
>sp|Q9YGK8|IRX1A_XENLA Iroquois-class homeodomain protein irx-1-A OS=Xenopus laevis
GN=irx1-a PE=2 SV=1
Length = 467
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 12 KALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGIV 61
KA L + + YPTK E LA +T QV TWF RRR K +N +
Sbjct: 142 KAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKVT 191
>sp|Q6NVN3|IRX3_XENTR Iroquois-class homeodomain protein irx-3 OS=Xenopus tropicalis
GN=irx3 PE=2 SV=1
Length = 448
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 12 KALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGIV 61
KA L + + YPTK E LA +T QV TWF RRR K +N +
Sbjct: 124 KAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 173
>sp|Q3LTE0|NANOG_PANTR Homeobox protein NANOG OS=Pan troglodytes GN=NANOG PE=3 SV=1
Length = 305
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 18 YSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGIVIPSSSSKKLKGFHGRN 77
+ +KY + +M+ L+ L+L+YKQV+TWF +R + K + K +N
Sbjct: 114 FQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSK------------RWQKNNWPKN 161
Query: 78 RLGVVSAKIVKKQDSLIHNKHLSLMVCNGTG 108
GV SL + H +V N TG
Sbjct: 162 SNGVTQKASAPTYPSLYSSYHQGCLV-NPTG 191
>sp|Q24248|ARA_DROME Homeobox protein araucan OS=Drosophila melanogaster GN=ara PE=1
SV=2
Length = 717
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%)
Query: 3 VKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58
R++ KA L + + YPTK E LA +T QV TWF RRR K +N
Sbjct: 262 ATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 317
>sp|Q9H9S0|NANOG_HUMAN Homeobox protein NANOG OS=Homo sapiens GN=NANOG PE=1 SV=2
Length = 305
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 18 YSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGIVIPSSSSKKLKGFHGRN 77
+ +KY + +M+ L+ L+L+YKQV+TWF +R + K + K +N
Sbjct: 114 FQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSK------------RWQKNNWPKN 161
Query: 78 RLGVVSAKIVKKQDSLIHNKHLSLMVCNGTG 108
GV SL + H +V N TG
Sbjct: 162 SNGVTQKASAPTYPSLYSSYHQGCLV-NPTG 191
>sp|Q9UIU6|SIX4_HUMAN Homeobox protein SIX4 OS=Homo sapiens GN=SIX4 PE=1 SV=2
Length = 781
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 12 KALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDK 55
AL + Y + +YP+ +E LA L+ QV WF +R+RD+
Sbjct: 236 NALKELYKQNRYPSPAEKRHLAKITGLSLTQVSNWFKNRRQRDR 279
>sp|Q6NSW7|NANP8_HUMAN Putative homeobox protein NANOGP8 OS=Homo sapiens GN=NANOGP8 PE=5
SV=1
Length = 305
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 18 YSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGIVIPSSSSKKLKGFHGRN 77
+ +KY + +M+ L+ L+L+YKQV+TWF +R + K + K +N
Sbjct: 114 FQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSK------------RWQKNNWPKN 161
Query: 78 RLGVVSAKIVKKQDSLIHNKHLSLMVCNGTG 108
GV SL + H +V N TG
Sbjct: 162 SNGVTQKASAPTYPSLYSSYHQGCLV-NPTG 191
>sp|P81068|IRX1_MOUSE Iroquois-class homeodomain protein IRX-1 OS=Mus musculus GN=Irx1
PE=2 SV=4
Length = 480
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 12 KALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGIV 61
KA L + + YPTK E LA +T QV TWF RRR K +N +
Sbjct: 143 KAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKVT 192
>sp|Q90XW5|IRX5_XENLA Iroquois-class homeodomain protein irx-5 OS=Xenopus laevis GN=irx5
PE=2 SV=1
Length = 474
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 12 KALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGIV 61
KA L + + YPTK E LA +T QV TWF RRR K +N +
Sbjct: 125 KAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 174
>sp|P54269|CAUP_DROME Homeobox protein caupolican OS=Drosophila melanogaster GN=caup PE=2
SV=2
Length = 693
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%)
Query: 3 VKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58
R++ KA L + + YPTK E LA +T QV TWF RRR K +N
Sbjct: 233 ATRESTATLKAWLSEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 288
>sp|Q4LDQ3|IRX5_XENTR Iroquois-class homeodomain protein irx-5 OS=Xenopus tropicalis
GN=irx5 PE=2 SV=1
Length = 482
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 12 KALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGIV 61
KA L + + YPTK E LA +T QV TWF RRR K +N +
Sbjct: 125 KAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 174
>sp|P78415|IRX3_HUMAN Iroquois-class homeodomain protein IRX-3 OS=Homo sapiens GN=IRX3
PE=2 SV=3
Length = 501
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 12 KALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGIV 61
KA L + + YPTK E LA +T QV TWF RRR K +N +
Sbjct: 143 KAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 192
>sp|P78412|IRX6_HUMAN Iroquois-class homeodomain protein IRX-6 OS=Homo sapiens GN=IRX6
PE=2 SV=3
Length = 446
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 29/59 (49%)
Query: 3 VKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGIV 61
R+T KA L + + YPTK E LA +T QV TWF RRR K +N +
Sbjct: 153 ATRETTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 211
>sp|P78414|IRX1_HUMAN Iroquois-class homeodomain protein IRX-1 OS=Homo sapiens GN=IRX1
PE=1 SV=3
Length = 480
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 12 KALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGIV 61
KA L + + YPTK E LA +T QV TWF RRR K +N +
Sbjct: 143 KAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKVT 192
>sp|Q8N5B7|CERS5_HUMAN Ceramide synthase 5 OS=Homo sapiens GN=CERS5 PE=2 SV=1
Length = 392
Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 8 PLQAK--ALLK--FYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDK 55
P QA+ A+L+ F S KYP K +EGL+ LD ++++ WF +R +DK
Sbjct: 83 PYQAQPNAILEKVFISITKYPDKKRLEGLSKQLDWNVRKIQCWFRHRRNQDK 134
>sp|Q5TM84|NANOG_MACFA Homeobox protein NANOG OS=Macaca fascicularis GN=NANOG PE=2 SV=1
Length = 305
Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 18 YSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGIVIPSSSSKKLKGFHGRN 77
+ +KY + +M+ L+ L+L+YKQV+TWF +R + K + K +N
Sbjct: 114 FQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSK------------RWQKNNWPKN 161
Query: 78 RLGVVSAKIVKKQDSLIHNKHLSLMVCNGTG 108
GV SL + H +V N TG
Sbjct: 162 SNGVTQKASAPTYPSLYSSCHQGCLV-NPTG 191
>sp|Q5R6L1|PKNX2_PONAB Homeobox protein PKNOX2 OS=Pongo abelii GN=PKNOX2 PE=2 SV=1
Length = 472
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 23 YPTKSEMEGLAAALDLTYKQVRTWFIEKRRR---DKGDNGIVIPSSSSKKLKGFH 74
YPT+ E +AA +LT QV WF+ RRR D P+ +KK+K H
Sbjct: 315 YPTEDEKRQIAAQTNLTLLQVNNWFVNARRRILQPMLDASNPDPAPKAKKIKSQH 369
>sp|Q27350|SO_DROME Protein sine oculis OS=Drosophila melanogaster GN=so PE=2 SV=1
Length = 416
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 14 LLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKG 56
L +YS YP+ E LA A LT QV WF +R+RD+
Sbjct: 233 LRDWYSHNPYPSPREKRDLAEATGLTTTQVSNWFKNRRQRDRA 275
>sp|P43688|NKX26_MOUSE Homeobox protein Nkx-2.6 OS=Mus musculus GN=Nkx2-6 PE=2 SV=2
Length = 289
Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 10 QAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDK 55
Q AL + + +++Y T E E LA+AL LT QV+ WF +R + K
Sbjct: 134 QVLALERRFKQQRYLTAPEREHLASALQLTSTQVKIWFQNRRYKSK 179
>sp|Q62232|SIX2_MOUSE Homeobox protein SIX2 OS=Mus musculus GN=Six2 PE=1 SV=2
Length = 296
Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 14 LLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKG 56
L ++Y+ YP+ E LA A LT QV WF +R+RD+
Sbjct: 139 LREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 181
>sp|Q9ER75|IRX6_MOUSE Iroquois-class homeodomain protein IRX-6 OS=Mus musculus GN=Irx6
PE=2 SV=2
Length = 438
Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 12 KALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGIV 61
KA L + + YPTK E LA +T QV TWF RRR K +N +
Sbjct: 159 KAWLHEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 208
>sp|Q9NPC8|SIX2_HUMAN Homeobox protein SIX2 OS=Homo sapiens GN=SIX2 PE=2 SV=1
Length = 291
Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 14 LLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKG 56
L ++Y+ YP+ E LA A LT QV WF +R+RD+
Sbjct: 139 LREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 181
>sp|P94421|YCLQ_BACSU Uncharacterized ABC transporter solute-binding protein YclQ
OS=Bacillus subtilis (strain 168) GN=yclQ PE=1 SV=1
Length = 317
Score = 38.1 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 558 LLISSTLSSDITLFEKIASSTYRLRINTSKEADDFESDAEDIGSVDDNSDD-DDTCSNRD 616
++IS+ S F KIA + Y L ++T+K + F+SDAE IG + D D D +N D
Sbjct: 119 IIISARQSESYKEFSKIAPTIY-LGVDTAKYMESFKSDAETIGKIFDKEDKVKDELANID 177
Query: 617 DS 618
S
Sbjct: 178 HS 179
>sp|Q5TM83|NANOG_MUSMM Homeobox protein NANOG OS=Mus musculus molossinus GN=Nanog PE=2
SV=1
Length = 305
Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 13 ALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDK 55
AL + ++KY + +M+ L++ L+L+YKQV+TWF +R + K
Sbjct: 110 ALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCK 152
>sp|Q8N7R0|NANG2_HUMAN Putative homeobox protein NANOG2 OS=Homo sapiens GN=NANOGP1 PE=5
SV=1
Length = 232
Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 18 YSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDK 55
+ +KY + +M+ L+ L+L+YKQV+TWF +R + K
Sbjct: 57 FQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSK 94
>sp|Q62231|SIX1_MOUSE Homeobox protein SIX1 OS=Mus musculus GN=Six1 PE=1 SV=2
Length = 284
Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 14 LLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKG 56
L ++Y+ YP+ E LA A LT QV WF +R+RD+
Sbjct: 139 LREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 181
>sp|Q80Z64|NANOG_MOUSE Homeobox protein NANOG OS=Mus musculus GN=Nanog PE=1 SV=1
Length = 305
Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 13 ALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDK 55
AL + ++KY + +M+ L++ L+L+YKQV+TWF +R + K
Sbjct: 110 ALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCK 152
>sp|P81066|IRX2_MOUSE Iroquois-class homeodomain protein IRX-2 OS=Mus musculus GN=Irx2
PE=2 SV=2
Length = 474
Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 25/47 (53%)
Query: 12 KALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58
KA L + + YPTK E LA +T QV TWF RRR K +N
Sbjct: 131 KAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 177
>sp|Q15475|SIX1_HUMAN Homeobox protein SIX1 OS=Homo sapiens GN=SIX1 PE=1 SV=1
Length = 284
Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 14 LLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKG 56
L ++Y+ YP+ E LA A LT QV WF +R+RD+
Sbjct: 139 LREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 181
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 434,175,919
Number of Sequences: 539616
Number of extensions: 18712505
Number of successful extensions: 66815
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 113
Number of HSP's that attempted gapping in prelim test: 65617
Number of HSP's gapped (non-prelim): 986
length of query: 1159
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1030
effective length of database: 121,958,995
effective search space: 125617764850
effective search space used: 125617764850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)