Query 001088
Match_columns 1159
No_of_seqs 382 out of 1563
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 10:26:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001088.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001088hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a03_A T-cell leukemia homeobo 99.4 2E-14 6.9E-19 122.0 0.5 55 3-57 1-55 (56)
2 2vi6_A Homeobox protein nanog; 99.4 6.1E-14 2.1E-18 121.2 2.0 57 2-58 6-62 (62)
3 3a02_A Homeobox protein arista 99.4 4.9E-14 1.7E-18 121.0 1.4 56 3-58 3-58 (60)
4 2cra_A Homeobox protein HOX-B1 99.4 8.6E-14 2.9E-18 123.1 2.4 57 2-58 10-66 (70)
5 1ahd_P Antennapedia protein mu 99.4 5.2E-14 1.8E-18 124.0 0.9 58 2-59 5-62 (68)
6 2hdd_A Protein (engrailed home 99.4 7.5E-14 2.6E-18 120.2 1.6 55 3-57 7-61 (61)
7 2l7z_A Homeobox protein HOX-A1 99.4 1.4E-13 4.8E-18 122.9 3.4 58 2-59 10-67 (73)
8 1ig7_A Homeotic protein MSX-1; 99.4 7.3E-14 2.5E-18 118.9 1.3 55 2-56 3-57 (58)
9 2h1k_A IPF-1, pancreatic and d 99.4 6.6E-14 2.3E-18 121.4 0.7 57 2-58 6-62 (63)
10 1bw5_A ISL-1HD, insulin gene e 99.4 1.4E-13 4.9E-18 120.2 2.6 58 2-59 6-63 (66)
11 2dmt_A Homeobox protein BARH-l 99.4 1.1E-13 3.9E-18 125.4 1.9 57 2-58 20-76 (80)
12 2djn_A Homeobox protein DLX-5; 99.4 1.4E-13 4.9E-18 121.7 2.4 57 2-58 10-66 (70)
13 2da5_A Zinc fingers and homeob 99.4 1.6E-13 5.6E-18 123.1 2.7 58 3-60 11-68 (75)
14 2da2_A Alpha-fetoprotein enhan 99.4 1.4E-13 4.6E-18 121.6 2.0 57 2-58 10-66 (70)
15 1jgg_A Segmentation protein EV 99.4 1E-13 3.5E-18 119.0 1.2 56 2-57 4-59 (60)
16 2dn0_A Zinc fingers and homeob 99.4 1.8E-13 6.1E-18 123.0 2.7 57 3-59 12-68 (76)
17 2ecc_A Homeobox and leucine zi 99.3 1.2E-13 4.2E-18 124.7 1.4 57 2-58 6-62 (76)
18 2dms_A Homeobox protein OTX2; 99.3 2.1E-13 7.4E-18 123.5 2.8 58 2-59 10-67 (80)
19 2dmu_A Homeobox protein goosec 99.3 1.3E-13 4.5E-18 121.8 1.3 57 2-58 10-66 (70)
20 2kt0_A Nanog, homeobox protein 99.3 2E-13 6.7E-18 124.7 2.4 57 2-58 25-81 (84)
21 2da1_A Alpha-fetoprotein enhan 99.3 1.3E-13 4.5E-18 121.7 1.1 57 2-58 10-66 (70)
22 1wh5_A ZF-HD homeobox family p 99.3 2.6E-13 9E-18 123.6 2.6 56 2-57 20-79 (80)
23 1uhs_A HOP, homeodomain only p 99.3 1.7E-13 5.9E-18 121.8 1.1 58 2-59 4-62 (72)
24 2ly9_A Zinc fingers and homeob 99.3 2.5E-13 8.4E-18 121.2 2.1 58 2-59 9-66 (74)
25 1ftt_A TTF-1 HD, thyroid trans 99.3 2.5E-13 8.7E-18 119.5 2.1 58 2-59 5-62 (68)
26 2da3_A Alpha-fetoprotein enhan 99.3 1.6E-13 5.4E-18 124.0 0.8 56 3-58 21-76 (80)
27 2hi3_A Homeodomain-only protei 99.3 1.8E-13 6.3E-18 122.0 1.1 58 2-59 5-63 (73)
28 3rkq_A Homeobox protein NKX-2. 99.3 2.4E-13 8.1E-18 115.2 1.6 54 2-55 5-58 (58)
29 2e1o_A Homeobox protein PRH; D 99.3 1.8E-13 6.2E-18 121.0 0.8 57 2-58 10-66 (70)
30 2ecb_A Zinc fingers and homeob 99.3 4.6E-13 1.6E-17 124.4 3.5 56 3-58 15-70 (89)
31 2dmq_A LIM/homeobox protein LH 99.3 2.2E-13 7.4E-18 123.3 1.1 57 2-58 10-66 (80)
32 2k40_A Homeobox expressed in E 99.3 2.8E-13 9.7E-18 118.7 1.7 58 2-59 4-61 (67)
33 1zq3_P PRD-4, homeotic bicoid 99.3 1.8E-13 6.2E-18 120.5 0.5 57 2-58 5-61 (68)
34 3a01_A Homeodomain-containing 99.3 2E-13 6.9E-18 127.5 0.4 59 2-60 20-78 (93)
35 2cue_A Paired box protein PAX6 99.3 2.7E-13 9.3E-18 123.0 1.2 57 2-58 10-66 (80)
36 1yz8_P Pituitary homeobox 2; D 99.3 1.7E-13 5.7E-18 120.6 -0.5 58 2-59 6-63 (68)
37 1b8i_A Ultrabithorax, protein 99.3 3.9E-13 1.3E-17 122.4 1.7 57 2-58 23-79 (81)
38 1nk2_P Homeobox protein VND; h 99.3 3.4E-13 1.2E-17 121.5 1.2 57 2-58 12-68 (77)
39 1wh7_A ZF-HD homeobox family p 99.3 6E-13 2E-17 121.3 2.8 54 3-57 21-79 (80)
40 1akh_A Protein (mating-type pr 99.3 4E-13 1.4E-17 115.5 1.4 53 3-55 9-61 (61)
41 2dmp_A Zinc fingers and homeob 99.3 7.2E-13 2.5E-17 122.9 3.2 57 3-59 17-73 (89)
42 2r5y_A Homeotic protein sex co 99.3 4.5E-13 1.5E-17 123.6 1.8 57 2-58 31-87 (88)
43 1puf_A HOX-1.7, homeobox prote 99.3 3.6E-13 1.2E-17 121.3 1.1 57 2-58 16-72 (77)
44 2da4_A Hypothetical protein DK 99.3 2E-13 6.8E-18 123.8 -0.7 58 2-59 11-72 (80)
45 2m0c_A Homeobox protein arista 99.3 5E-13 1.7E-17 119.1 1.9 58 2-59 12-69 (75)
46 1k61_A Mating-type protein alp 99.3 5.2E-13 1.8E-17 114.5 1.8 55 3-57 2-59 (60)
47 1fjl_A Paired protein; DNA-bin 99.3 5.6E-13 1.9E-17 121.1 1.1 57 2-58 21-77 (81)
48 1du6_A PBX1, homeobox protein 99.3 9.7E-13 3.3E-17 114.2 2.0 56 2-57 6-64 (64)
49 2cqx_A LAG1 longevity assuranc 99.3 4.7E-13 1.6E-17 119.6 -0.2 57 2-58 11-68 (72)
50 2l9r_A Homeobox protein NKX-3. 99.3 1.2E-12 4E-17 116.3 2.1 54 5-58 10-63 (69)
51 3nar_A ZHX1, zinc fingers and 99.2 1.1E-12 3.9E-17 123.0 2.0 57 2-58 28-84 (96)
52 1b72_A Protein (homeobox prote 99.2 1.1E-12 3.9E-17 123.1 1.1 56 3-58 38-93 (97)
53 1puf_B PRE-B-cell leukemia tra 99.2 1.9E-12 6.4E-17 115.3 1.4 58 2-59 4-64 (73)
54 3nau_A Zinc fingers and homeob 99.2 1.5E-12 5E-17 114.5 0.6 53 5-57 10-62 (66)
55 1le8_B Mating-type protein alp 99.2 2.8E-12 9.6E-17 117.2 2.1 57 2-58 5-64 (83)
56 2e19_A Transcription factor 8; 99.2 3.6E-12 1.2E-16 111.5 2.3 55 4-58 8-62 (64)
57 1x2n_A Homeobox protein pknox1 99.2 3.6E-12 1.2E-16 113.5 1.4 57 2-58 10-69 (73)
58 1b72_B Protein (PBX1); homeodo 99.2 3.6E-12 1.2E-16 117.0 1.2 57 2-58 4-63 (87)
59 1x2m_A LAG1 longevity assuranc 99.2 3.7E-12 1.3E-16 111.6 1.0 53 6-58 7-60 (64)
60 1au7_A Protein PIT-1, GHF-1; c 99.2 6.1E-12 2.1E-16 126.6 2.1 57 2-58 90-146 (146)
61 1mnm_C Protein (MAT alpha-2 tr 99.2 6.1E-12 2.1E-16 115.8 1.8 54 3-56 31-87 (87)
62 1e3o_C Octamer-binding transcr 99.2 6.4E-12 2.2E-16 128.1 1.9 57 2-58 104-160 (160)
63 2cuf_A FLJ21616 protein; homeo 99.1 4.3E-12 1.5E-16 118.7 0.4 57 2-58 10-81 (95)
64 2xsd_C POU domain, class 3, tr 99.1 7.8E-12 2.7E-16 128.1 1.7 56 3-58 103-158 (164)
65 1lfb_A Liver transcription fac 99.1 1.4E-11 4.7E-16 116.7 2.0 57 2-58 12-89 (99)
66 1wi3_A DNA-binding protein SAT 99.1 1.3E-11 4.5E-16 108.7 1.6 54 3-56 11-65 (71)
67 3d1n_I POU domain, class 6, tr 99.1 1.7E-11 5.7E-16 123.8 1.6 55 2-56 96-150 (151)
68 2dmn_A Homeobox protein TGIF2L 99.1 2.1E-11 7.2E-16 111.6 1.8 56 3-58 11-69 (83)
69 2d5v_A Hepatocyte nuclear fact 99.0 3.6E-11 1.2E-15 122.7 2.2 57 2-58 100-156 (164)
70 3l1p_A POU domain, class 5, tr 99.0 2.3E-11 8E-16 123.4 0.7 56 2-57 99-154 (155)
71 2da6_A Hepatocyte nuclear fact 99.0 2.8E-11 9.5E-16 114.9 1.1 57 2-58 9-86 (102)
72 3k2a_A Homeobox protein MEIS2; 99.0 3.3E-11 1.1E-15 106.1 1.5 56 3-58 2-60 (67)
73 2da7_A Zinc finger homeobox pr 98.7 2.4E-09 8.1E-14 95.0 1.0 47 8-54 14-60 (71)
74 2lk2_A Homeobox protein TGIF1; 98.6 4.8E-09 1.6E-13 97.5 0.4 55 4-58 10-67 (89)
75 2nzz_A Penetratin conjugated G 97.7 2.9E-06 9.8E-11 66.8 -0.7 19 41-59 1-19 (37)
76 2h8r_A Hepatocyte nuclear fact 92.5 0.078 2.7E-06 56.8 4.1 37 2-38 145-181 (221)
77 1ic8_A Hepatocyte nuclear fact 91.9 0.057 2E-06 56.8 2.1 36 2-37 118-153 (194)
78 2ys9_A Homeobox and leucine zi 61.6 2.7 9.1E-05 37.6 1.2 42 8-49 15-56 (70)
79 3irb_A Uncharacterized protein 36.9 7.3 0.00025 38.9 0.0 32 958-993 39-70 (145)
80 2y9y_B IOC3, ISWI one complex 33.6 96 0.0033 37.4 8.5 58 376-433 53-146 (624)
81 2gnr_A Conserved hypothetical 30.2 11 0.00038 37.8 0.0 26 968-993 45-70 (145)
82 2m0e_A Zinc finger and BTB dom 28.0 26 0.00088 22.9 1.7 22 986-1007 4-25 (29)
83 1rik_A E6APC1 peptide; E6-bind 23.6 26 0.0009 23.1 1.0 17 986-1002 4-20 (29)
84 2apo_B Ribosome biogenesis pro 21.9 30 0.001 30.0 1.2 41 969-1011 5-49 (60)
85 1lko_A Rubrerythrin all-iron(I 21.6 39 0.0013 35.0 2.2 40 954-993 137-180 (191)
86 1ard_A Yeast transcription fac 21.4 25 0.00087 23.1 0.6 15 986-1000 4-18 (29)
87 2m0f_A Zinc finger and BTB dom 21.4 24 0.00082 23.1 0.4 17 986-1002 4-20 (29)
88 1s05_A Cytochrome C-556, C556; 20.9 14 0.00049 35.9 -1.1 15 934-948 72-86 (129)
89 3mhs_C SAGA-associated factor 20.0 35 0.0012 32.4 1.3 26 986-1016 72-97 (99)
No 1
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.41 E-value=2e-14 Score=121.96 Aligned_cols=55 Identities=29% Similarity=0.420 Sum_probs=51.0
Q ss_pred cccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccC
Q 001088 3 VKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGD 57 (1159)
Q Consensus 3 rTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~ 57 (1159)
+|.||..|+..|+..|..++||+...|.+||..+||++.+|++||||||+|+|++
T Consensus 1 ~T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 1 MTSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp ---CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 5899999999999999999999999999999999999999999999999999985
No 2
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.39 E-value=6.1e-14 Score=121.18 Aligned_cols=57 Identities=32% Similarity=0.445 Sum_probs=53.4
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
-||.||..|+..||..|..++||+...+.+||..+||++.+|++||||||+|+|+.+
T Consensus 6 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 6 MRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp --CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 378999999999999999999999999999999999999999999999999999853
No 3
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.39 E-value=4.9e-14 Score=120.97 Aligned_cols=56 Identities=27% Similarity=0.409 Sum_probs=50.7
Q ss_pred cccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 3 VKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 3 rTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
||+||..|+..|+..|..++||+...+..||..+||++.+|++||||||+|+|+..
T Consensus 3 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp --CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 79999999999999999999999999999999999999999999999999999875
No 4
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.38 E-value=8.6e-14 Score=123.10 Aligned_cols=57 Identities=25% Similarity=0.397 Sum_probs=55.2
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
-||+||..|+..||..|..++||+...+..||..+||++.+|++||||||+|+|+..
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 10 KRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp SCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 379999999999999999999999999999999999999999999999999999976
No 5
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.38 E-value=5.2e-14 Score=124.02 Aligned_cols=58 Identities=29% Similarity=0.384 Sum_probs=55.7
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNG 59 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~~ 59 (1159)
-||.||..|+..|+..|..++||+...+..||..+||++.+|++||||||+|+|+...
T Consensus 5 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 5 GRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp TTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 3799999999999999999999999999999999999999999999999999999874
No 6
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.37 E-value=7.5e-14 Score=120.22 Aligned_cols=55 Identities=25% Similarity=0.392 Sum_probs=53.4
Q ss_pred cccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccC
Q 001088 3 VKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGD 57 (1159)
Q Consensus 3 rTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~ 57 (1159)
||.||+.|+..||..|..++||+...+..||..+||++.+|++||||||+|+|+.
T Consensus 7 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (61)
T 2hdd_A 7 RTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKKS 61 (61)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhccccccC
Confidence 7999999999999999999999999999999999999999999999999999873
No 7
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.37 E-value=1.4e-13 Score=122.86 Aligned_cols=58 Identities=28% Similarity=0.402 Sum_probs=55.8
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNG 59 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~~ 59 (1159)
-||+||..|+..||..|..++||+...+..||..+||++.+|++||||||+|+|+...
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 10 KRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp CCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 3789999999999999999999999999999999999999999999999999999874
No 8
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.37 E-value=7.3e-14 Score=118.90 Aligned_cols=55 Identities=27% Similarity=0.408 Sum_probs=53.3
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeecccccccccc
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKG 56 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR 56 (1159)
-||.||..|+..|+..|..++||+...+..||..+||++.+|++||||||+|+|+
T Consensus 3 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 3 PRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 3799999999999999999999999999999999999999999999999999987
No 9
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.37 E-value=6.6e-14 Score=121.40 Aligned_cols=57 Identities=26% Similarity=0.344 Sum_probs=54.6
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
-||.||..|+..|+..|..++||+...+..||..+||++.+|++||||||+|+|+..
T Consensus 6 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 6 TRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 379999999999999999999999999999999999999999999999999999854
No 10
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.36 E-value=1.4e-13 Score=120.25 Aligned_cols=58 Identities=24% Similarity=0.292 Sum_probs=55.6
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNG 59 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~~ 59 (1159)
-||.||..|+..|+..|..++||+...+..||..+||++.+|++||||||+|+|+...
T Consensus 6 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 6 VRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhh
Confidence 3789999999999999999999999999999999999999999999999999999773
No 11
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.1e-13 Score=125.43 Aligned_cols=57 Identities=30% Similarity=0.394 Sum_probs=55.2
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
-||.||..|+..||..|..++||+...+..||..+||++.||+|||||||+|+|+..
T Consensus 20 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 20 SRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp SCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 378999999999999999999999999999999999999999999999999999976
No 12
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.4e-13 Score=121.70 Aligned_cols=57 Identities=32% Similarity=0.426 Sum_probs=55.2
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
-||.||..|+..|+..|..++||+...+..||..+||++.+|++||||||+|+|+..
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 10 PRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp SSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 379999999999999999999999999999999999999999999999999999976
No 13
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.6e-13 Score=123.13 Aligned_cols=58 Identities=22% Similarity=0.515 Sum_probs=55.6
Q ss_pred cccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCCCC
Q 001088 3 VKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGI 60 (1159)
Q Consensus 3 rTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~~~ 60 (1159)
|++||..|+..||..|..++||+...+..||..+||++.+|++||||||+|+|+....
T Consensus 11 r~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 11 YKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 6889999999999999999999999999999999999999999999999999998743
No 14
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.35 E-value=1.4e-13 Score=121.64 Aligned_cols=57 Identities=26% Similarity=0.535 Sum_probs=55.2
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
-||+||..|+..|+..|..++||+...+..||..+||++.+|++||||||+|+|+..
T Consensus 10 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 10 SRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 378999999999999999999999999999999999999999999999999999976
No 15
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.35 E-value=1e-13 Score=119.02 Aligned_cols=56 Identities=29% Similarity=0.372 Sum_probs=54.0
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGD 57 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~ 57 (1159)
-||.||..|+..|+..|..++||+...+..||..+||++.+|++||||||+|+|++
T Consensus 4 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 4 YRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 37999999999999999999999999999999999999999999999999999885
No 16
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.8e-13 Score=123.01 Aligned_cols=57 Identities=28% Similarity=0.505 Sum_probs=55.4
Q ss_pred cccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCCC
Q 001088 3 VKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNG 59 (1159)
Q Consensus 3 rTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~~ 59 (1159)
||+||..|+..|+..|..++||+...+.+||..+||++.+|++||||||+|+|+...
T Consensus 12 R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 12 KNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 799999999999999999999999999999999999999999999999999999874
No 17
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.35 E-value=1.2e-13 Score=124.74 Aligned_cols=57 Identities=23% Similarity=0.329 Sum_probs=55.2
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
.+++||.+|+..|+..|..++||+..+|.+||..+||++.||+|||||||+|+|+.+
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999977
No 18
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.35 E-value=2.1e-13 Score=123.54 Aligned_cols=58 Identities=22% Similarity=0.387 Sum_probs=55.8
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNG 59 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~~ 59 (1159)
-||+||..|+..|+..|..++||+...+..||..+||++.+|++||||||+|+|+...
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 10 ERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 3799999999999999999999999999999999999999999999999999999873
No 19
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.3e-13 Score=121.82 Aligned_cols=57 Identities=28% Similarity=0.410 Sum_probs=55.1
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
-||+||..|+..|+..|..++||+...+..||..+||++.||++||||||+|+|+..
T Consensus 10 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 10 HRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 378999999999999999999999999999999999999999999999999999976
No 20
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.34 E-value=2e-13 Score=124.68 Aligned_cols=57 Identities=30% Similarity=0.449 Sum_probs=55.2
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
-||.||..|+..|+..|..++||+...+..||..+||++.+|+|||||||+|+|+..
T Consensus 25 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 25 TRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 379999999999999999999999999999999999999999999999999999976
No 21
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.34 E-value=1.3e-13 Score=121.72 Aligned_cols=57 Identities=18% Similarity=0.370 Sum_probs=55.2
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
-||+||..|+..|+..|..++||+...+..||..+||++.+|++||||||+|+|+..
T Consensus 10 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 10 PRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 378999999999999999999999999999999999999999999999999999976
No 22
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.33 E-value=2.6e-13 Score=123.56 Aligned_cols=56 Identities=7% Similarity=0.188 Sum_probs=53.5
Q ss_pred ccccCCHHHHHHHHHhHhh----CCCCCHHHHHHHHHHcCCCCCceeeeccccccccccC
Q 001088 2 EVKRKTPLQAKALLKFYSE----EKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGD 57 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~----~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~ 57 (1159)
-||.||..|+..|+..|.. ++||+...|.+||..+||++.+|+|||||||+|+|+.
T Consensus 20 ~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 20 HRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp CSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSCC
T ss_pred CCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCCC
Confidence 3789999999999999999 9999999999999999999999999999999999863
No 23
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.33 E-value=1.7e-13 Score=121.78 Aligned_cols=58 Identities=22% Similarity=0.282 Sum_probs=55.3
Q ss_pred ccccCCHHHHHHHHHhHhh-CCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCCC
Q 001088 2 EVKRKTPLQAKALLKFYSE-EKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNG 59 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~-~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~~ 59 (1159)
-||+||..|+..|+..|.. ++||+...+..||..+||++.+|++||||||+|+|+...
T Consensus 4 ~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 4 GAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence 4789999999999999996 999999999999999999999999999999999999773
No 24
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.33 E-value=2.5e-13 Score=121.22 Aligned_cols=58 Identities=24% Similarity=0.393 Sum_probs=55.8
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNG 59 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~~ 59 (1159)
-||.||..|+..|+..|..++||+...+.+||..+||++.||++||||||+|+|+.+.
T Consensus 9 ~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 9 IRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp TTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 4899999999999999999999999999999999999999999999999999999873
No 25
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.33 E-value=2.5e-13 Score=119.55 Aligned_cols=58 Identities=28% Similarity=0.360 Sum_probs=55.6
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNG 59 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~~ 59 (1159)
-||+||..|+..|+..|..++||+...+..||..+||++.+|++||||||+|+|+...
T Consensus 5 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 5 RRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp SCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 3789999999999999999999999999999999999999999999999999999873
No 26
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.33 E-value=1.6e-13 Score=123.97 Aligned_cols=56 Identities=25% Similarity=0.449 Sum_probs=54.8
Q ss_pred cccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 3 VKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 3 rTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
||+||..|+..|+..|..++||+...+.+||..+||++.+|++||||||+|+|+.+
T Consensus 21 Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 21 RTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 78999999999999999999999999999999999999999999999999999976
No 27
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.33 E-value=1.8e-13 Score=122.01 Aligned_cols=58 Identities=24% Similarity=0.308 Sum_probs=55.1
Q ss_pred ccccCCHHHHHHHHHhHhh-CCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCCC
Q 001088 2 EVKRKTPLQAKALLKFYSE-EKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNG 59 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~-~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~~ 59 (1159)
-||+||..|+..||..|.. ++||+...+..||..+||++.+|++||||||+|+|+...
T Consensus 5 ~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 5 TVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 3789999999999999995 999999999999999999999999999999999999773
No 28
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.32 E-value=2.4e-13 Score=115.23 Aligned_cols=54 Identities=28% Similarity=0.439 Sum_probs=52.2
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccc
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDK 55 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~K 55 (1159)
.||+||..|+..|+..|..++||+...+..||..+||++.||++||||||+|+|
T Consensus 5 ~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 5 PRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 489999999999999999999999999999999999999999999999999976
No 29
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.32 E-value=1.8e-13 Score=121.03 Aligned_cols=57 Identities=30% Similarity=0.407 Sum_probs=55.1
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
-|++||..|+..|+..|..++||+...+..||..+||++.||++||||||+|+|+..
T Consensus 10 ~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 10 GQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 479999999999999999999999999999999999999999999999999999876
No 30
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.32 E-value=4.6e-13 Score=124.44 Aligned_cols=56 Identities=27% Similarity=0.404 Sum_probs=53.9
Q ss_pred cccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 3 VKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 3 rTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
.++||..|+..||..|..++||+...|.+||..+||++.||+|||||||+|+|+..
T Consensus 15 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 15 FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999876
No 31
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=2.2e-13 Score=123.30 Aligned_cols=57 Identities=16% Similarity=0.314 Sum_probs=55.1
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
-||+||..|+..|+..|..++||+...+..||..+||++.+|++||||||+|+|+..
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 10 MRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999999999999999999976
No 32
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.32 E-value=2.8e-13 Score=118.72 Aligned_cols=58 Identities=24% Similarity=0.383 Sum_probs=55.6
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNG 59 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~~ 59 (1159)
-||+||+.|+..|+..|..++||+...+..||..+||++.+|++||||||+|+|+...
T Consensus 4 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 4 PRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 3799999999999999999999999999999999999999999999999999999873
No 33
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.32 E-value=1.8e-13 Score=120.49 Aligned_cols=57 Identities=30% Similarity=0.437 Sum_probs=55.1
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
-||.||..|+..|+..|..++||+...+..||..+||++.+|++||||||+|+|+..
T Consensus 5 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 5 TRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp CSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHh
Confidence 379999999999999999999999999999999999999999999999999999876
No 34
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.31 E-value=2e-13 Score=127.48 Aligned_cols=59 Identities=29% Similarity=0.413 Sum_probs=56.2
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCCCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNGI 60 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~~~ 60 (1159)
-||.||..|+..||..|..++||+...+..||..+||++.+|+|||||||+|+|+....
T Consensus 20 ~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 20 PRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHH
Confidence 37899999999999999999999999999999999999999999999999999998743
No 35
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.31 E-value=2.7e-13 Score=122.96 Aligned_cols=57 Identities=28% Similarity=0.422 Sum_probs=55.2
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
-||+||..|+..||..|..++||+...+..||..+||++.+|+|||||||+|+|+..
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (80)
T 2cue_A 10 NRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 66 (80)
T ss_dssp CCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHh
Confidence 379999999999999999999999999999999999999999999999999999976
No 36
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.30 E-value=1.7e-13 Score=120.61 Aligned_cols=58 Identities=26% Similarity=0.390 Sum_probs=55.6
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNG 59 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~~ 59 (1159)
-||.||..|+..|+..|..++||+...+..||..+||++.+|++||||||+|+|+...
T Consensus 6 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 6 QRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp SCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 3799999999999999999999999999999999999999999999999999999774
No 37
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.30 E-value=3.9e-13 Score=122.41 Aligned_cols=57 Identities=28% Similarity=0.376 Sum_probs=54.6
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
-||.||..|+..||..|..++||+...+.+||..+||++.+|+|||||||+|+|+..
T Consensus 23 ~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 23 GRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 378999999999999999999999999999999999999999999999999999975
No 38
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.30 E-value=3.4e-13 Score=121.51 Aligned_cols=57 Identities=28% Similarity=0.384 Sum_probs=54.8
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
-||+||..|+..||..|..++||+...+..||..+||++.+|+|||||||+|+|+..
T Consensus 12 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~ 68 (77)
T 1nk2_P 12 RRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQ 68 (77)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhh
Confidence 378999999999999999999999999999999999999999999999999999866
No 39
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.30 E-value=6e-13 Score=121.33 Aligned_cols=54 Identities=13% Similarity=0.249 Sum_probs=51.8
Q ss_pred cccCCHHHHHHHHHhHhh-----CCCCCHHHHHHHHHHcCCCCCceeeeccccccccccC
Q 001088 3 VKRKTPLQAKALLKFYSE-----EKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGD 57 (1159)
Q Consensus 3 rTrfT~~Ql~~LE~~Fq~-----~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~ 57 (1159)
||.||..|+..|+ .|.. ++||+...|.+||..+||++.||+|||||||+|+|+.
T Consensus 21 Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 21 RTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp CCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCCC
T ss_pred CccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCCC
Confidence 7899999999999 7999 9999999999999999999999999999999999863
No 40
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.29 E-value=4e-13 Score=115.48 Aligned_cols=53 Identities=30% Similarity=0.414 Sum_probs=48.5
Q ss_pred cccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccc
Q 001088 3 VKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDK 55 (1159)
Q Consensus 3 rTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~K 55 (1159)
||+||..|+..|+..|..++||+...+..||..+||++.||++||||||+|+|
T Consensus 9 Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 9 KSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 78999999999999999999999999999999999999999999999999976
No 41
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=7.2e-13 Score=122.87 Aligned_cols=57 Identities=26% Similarity=0.485 Sum_probs=54.4
Q ss_pred cccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCCC
Q 001088 3 VKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNG 59 (1159)
Q Consensus 3 rTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~~ 59 (1159)
+++||..|+..|+..|..++||+...|.+||..+||++.+|+|||||||+|+|+...
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred cccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 467999999999999999999999999999999999999999999999999999874
No 42
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.29 E-value=4.5e-13 Score=123.62 Aligned_cols=57 Identities=28% Similarity=0.388 Sum_probs=54.8
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
-||.||..|+..||..|..++||+...|..||..+||++.+|+|||||||+|+|+..
T Consensus 31 ~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 31 QRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 378999999999999999999999999999999999999999999999999999865
No 43
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.29 E-value=3.6e-13 Score=121.30 Aligned_cols=57 Identities=30% Similarity=0.300 Sum_probs=54.7
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
-||+||..|+..||..|..++||+...+..||..+||++.+|+|||||||+|+|+..
T Consensus 16 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 72 (77)
T 1puf_A 16 KRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 72 (77)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhh
Confidence 378999999999999999999999999999999999999999999999999999865
No 44
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2e-13 Score=123.75 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=55.4
Q ss_pred ccccCCHHHHHHHHHhHhhC----CCCCHHHHHHHHHHcCCCCCceeeeccccccccccCCC
Q 001088 2 EVKRKTPLQAKALLKFYSEE----KYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNG 59 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~----~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~~ 59 (1159)
-||.||..|+..|+..|..+ +||+...+.+||..+||++.+|+|||||||+|+|+...
T Consensus 11 ~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~ 72 (80)
T 2da4_A 11 DRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGI 72 (80)
T ss_dssp SSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccC
Confidence 47899999999999999999 99999999999999999999999999999999999763
No 45
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.29 E-value=5e-13 Score=119.15 Aligned_cols=58 Identities=28% Similarity=0.400 Sum_probs=55.7
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNG 59 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~~ 59 (1159)
.||+||..|+..|+..|..++||+...+..||..+||++.+|++||||||+|+|+...
T Consensus 12 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 12 NRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 4899999999999999999999999999999999999999999999999999999873
No 46
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.29 E-value=5.2e-13 Score=114.52 Aligned_cols=55 Identities=22% Similarity=0.404 Sum_probs=53.4
Q ss_pred cccCCHHHHHHHHHhHhh---CCCCCHHHHHHHHHHcCCCCCceeeeccccccccccC
Q 001088 3 VKRKTPLQAKALLKFYSE---EKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGD 57 (1159)
Q Consensus 3 rTrfT~~Ql~~LE~~Fq~---~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~ 57 (1159)
+++||..|+..|+..|.. ++||+...+..||..+||++.||++||||||+|+|+.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 689999999999999999 9999999999999999999999999999999999985
No 47
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.27 E-value=5.6e-13 Score=121.07 Aligned_cols=57 Identities=23% Similarity=0.381 Sum_probs=54.7
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
-||+||..|+..|+..|..++||+...+..||..+||++.||++||||||+|+|+..
T Consensus 21 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 21 SRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 378999999999999999999999999999999999999999999999999999864
No 48
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.26 E-value=9.7e-13 Score=114.22 Aligned_cols=56 Identities=29% Similarity=0.453 Sum_probs=53.7
Q ss_pred ccccCCHHHHHHHHHhH---hhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccC
Q 001088 2 EVKRKTPLQAKALLKFY---SEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGD 57 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~F---q~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~ 57 (1159)
-|+.||..|+..|+..| ..++||+..++..||..+||++.||++||||||+|+|+.
T Consensus 6 ~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 6 EGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 47899999999999999 999999999999999999999999999999999999874
No 49
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.26 E-value=4.7e-13 Score=119.62 Aligned_cols=57 Identities=26% Similarity=0.548 Sum_probs=54.6
Q ss_pred ccccCCHHHHHHHHHhH-hhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFY-SEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~F-q~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
.+++++..|+..||..| ..++||+...|.+||..+||++.||+|||||||+|+|+..
T Consensus 11 ~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 11 DSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 46789999999999999 9999999999999999999999999999999999999876
No 50
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.25 E-value=1.2e-12 Score=116.31 Aligned_cols=54 Identities=31% Similarity=0.457 Sum_probs=52.3
Q ss_pred cCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 5 RKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 5 rfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
.+|..|+..||..|..++||+...|.+||..+||+++||+|||||||+|+|+..
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 578999999999999999999999999999999999999999999999999987
No 51
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.25 E-value=1.1e-12 Score=122.96 Aligned_cols=57 Identities=26% Similarity=0.434 Sum_probs=55.2
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
.||+||..|+..|+..|..++||+...+.+||..+||++.||++||||||+|+|+.+
T Consensus 28 ~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 28 KICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp CSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 489999999999999999999999999999999999999999999999999999976
No 52
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.23 E-value=1.1e-12 Score=123.08 Aligned_cols=56 Identities=29% Similarity=0.398 Sum_probs=54.5
Q ss_pred cccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 3 VKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 3 rTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
||.||..|+..||..|..++||+...+..||..+||++.||+|||||||+|+|+..
T Consensus 38 Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 38 RTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 89999999999999999999999999999999999999999999999999999865
No 53
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.21 E-value=1.9e-12 Score=115.31 Aligned_cols=58 Identities=28% Similarity=0.441 Sum_probs=55.3
Q ss_pred ccccCCHHHHHHHHHhH---hhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCCC
Q 001088 2 EVKRKTPLQAKALLKFY---SEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDNG 59 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~F---q~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~~ 59 (1159)
-|++||..|+..|+..| ..++||+...+..||..+||++.||++||||||+|+|+...
T Consensus 4 ~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 4 KRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccc
Confidence 37899999999999999 99999999999999999999999999999999999999773
No 54
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.21 E-value=1.5e-12 Score=114.47 Aligned_cols=53 Identities=23% Similarity=0.422 Sum_probs=50.2
Q ss_pred cCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccC
Q 001088 5 RKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGD 57 (1159)
Q Consensus 5 rfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~ 57 (1159)
..|..|+..|+..|..++||+..++.+||..+||+++||++||||||+|+|+.
T Consensus 10 ~~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 10 KKTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp -CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 46889999999999999999999999999999999999999999999999864
No 55
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.20 E-value=2.8e-12 Score=117.24 Aligned_cols=57 Identities=19% Similarity=0.364 Sum_probs=54.7
Q ss_pred ccccCCHHHHHHHHHhHhh---CCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSE---EKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~---~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
-+++||..|+..|+..|.. ++||+...+..||..+||++.||++||||||+|+|+..
T Consensus 5 rr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 5 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 3678999999999999999 99999999999999999999999999999999999976
No 56
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=3.6e-12 Score=111.47 Aligned_cols=55 Identities=16% Similarity=0.314 Sum_probs=51.7
Q ss_pred ccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 4 KRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 4 TrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
..++..|+..||..|..++||+...|.+||..+||++++|+|||||||+|.++.+
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~~ 62 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQ 62 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCSS
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCCC
Confidence 4578999999999999999999999999999999999999999999999988754
No 57
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.18 E-value=3.6e-12 Score=113.50 Aligned_cols=57 Identities=28% Similarity=0.418 Sum_probs=54.4
Q ss_pred ccccCCHHHHHHHHHhHhh---CCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSE---EKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~---~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
-|++||..|+..|+..|.. ++||+..++..||..+||++.||++||||||+|+|+..
T Consensus 10 ~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 10 KRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 4789999999999999977 99999999999999999999999999999999999876
No 58
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.17 E-value=3.6e-12 Score=117.02 Aligned_cols=57 Identities=26% Similarity=0.410 Sum_probs=55.0
Q ss_pred ccccCCHHHHHHHHHhH---hhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFY---SEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~F---q~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
-|++||..|+..|+..| ..++||+..++..||..+||++.||++||||||+|+|+..
T Consensus 4 ~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 63 (87)
T 1b72_B 4 KRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (87)
T ss_dssp CCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCG
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcc
Confidence 37899999999999999 9999999999999999999999999999999999999977
No 59
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.17 E-value=3.7e-12 Score=111.59 Aligned_cols=53 Identities=26% Similarity=0.524 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHhH-hhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 6 KTPLQAKALLKFY-SEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 6 fT~~Ql~~LE~~F-q~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
..+.|+..||..| ..++||+...|.+||..+||+++||+|||||||+|+|+..
T Consensus 7 ~~~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~ 60 (64)
T 1x2m_A 7 GTAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSG 60 (64)
T ss_dssp CSSCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSS
T ss_pred CCchHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCC
Confidence 3467899999999 6799999999999999999999999999999999999865
No 60
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.16 E-value=6.1e-12 Score=126.57 Aligned_cols=57 Identities=26% Similarity=0.460 Sum_probs=54.7
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
-||.||..|+..||..|..++||+...|..||..+||++.+|+|||||||+|+||++
T Consensus 90 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~k 146 (146)
T 1au7_A 90 RRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK 146 (146)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSCC
T ss_pred CCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhccC
Confidence 378999999999999999999999999999999999999999999999999999864
No 61
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.16 E-value=6.1e-12 Score=115.82 Aligned_cols=54 Identities=22% Similarity=0.434 Sum_probs=52.3
Q ss_pred cccCCHHHHHHHHHhHhh---CCCCCHHHHHHHHHHcCCCCCceeeecccccccccc
Q 001088 3 VKRKTPLQAKALLKFYSE---EKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKG 56 (1159)
Q Consensus 3 rTrfT~~Ql~~LE~~Fq~---~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR 56 (1159)
|++||..|+..|+..|.. ++||+...+..||..+||++.||++||||||+|+|.
T Consensus 31 r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 31 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp TCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 789999999999999999 999999999999999999999999999999999874
No 62
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.15 E-value=6.4e-12 Score=128.11 Aligned_cols=57 Identities=25% Similarity=0.402 Sum_probs=54.7
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
-||.||..|+..||..|..++||+...|..||..+||++.+|+|||||||+|+||.+
T Consensus 104 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 160 (160)
T 1e3o_C 104 KRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRIN 160 (160)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSCC
T ss_pred CccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhccC
Confidence 389999999999999999999999999999999999999999999999999999863
No 63
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.15 E-value=4.3e-12 Score=118.72 Aligned_cols=57 Identities=21% Similarity=0.366 Sum_probs=55.3
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcC---------------CCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALD---------------LTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~Lg---------------Lse~QVqVWFQNRRaK~KR~~ 58 (1159)
.|+.||+.|+..||..|..++||+...|..||..+| |++.+|++||||||+|+|+..
T Consensus 10 ~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 10 SRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp CSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 488999999999999999999999999999999999 999999999999999999977
No 64
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.13 E-value=7.8e-12 Score=128.12 Aligned_cols=56 Identities=27% Similarity=0.396 Sum_probs=52.3
Q ss_pred cccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 3 VKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 3 rTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
||+||..|+..||..|..++||+...|.+||..+||++.+|+|||||||+|+||..
T Consensus 103 Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 103 RTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp ---CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred ceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 78999999999999999999999999999999999999999999999999999987
No 65
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.11 E-value=1.4e-11 Score=116.68 Aligned_cols=57 Identities=26% Similarity=0.447 Sum_probs=54.2
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHH------------------cC---CCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAA------------------LD---LTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~------------------Lg---Lse~QVqVWFQNRRaK~KR~~ 58 (1159)
.||.||+.|+..||..|..++||+...|.+||.. +| |++.+|++||||||+++|++.
T Consensus 12 ~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k~k~ 89 (99)
T 1lfb_A 12 NRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFRH 89 (99)
T ss_dssp -CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSCCC
T ss_pred CCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHHHhc
Confidence 4899999999999999999999999999999999 88 999999999999999998876
No 66
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.11 E-value=1.3e-11 Score=108.67 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=51.6
Q ss_pred cccCCHHHHHHHHHhHhh-CCCCCHHHHHHHHHHcCCCCCceeeecccccccccc
Q 001088 3 VKRKTPLQAKALLKFYSE-EKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKG 56 (1159)
Q Consensus 3 rTrfT~~Ql~~LE~~Fq~-~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR 56 (1159)
||.||.+|+..|+..|+. ++||+...|..||+.+||++++|+|||||||--.+.
T Consensus 11 RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~ 65 (71)
T 1wi3_A 11 RTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65 (71)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCS
T ss_pred CccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecC
Confidence 899999999999999999 999999999999999999999999999999987654
No 67
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.09 E-value=1.7e-11 Score=123.79 Aligned_cols=55 Identities=27% Similarity=0.477 Sum_probs=53.3
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeecccccccccc
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKG 56 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR 56 (1159)
-||.||..|+..|+..|..++||+...+..||..+||++.||+|||||||+|+||
T Consensus 96 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 96 RRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 3789999999999999999999999999999999999999999999999999987
No 68
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.08 E-value=2.1e-11 Score=111.59 Aligned_cols=56 Identities=27% Similarity=0.418 Sum_probs=53.2
Q ss_pred cccCCHHHHHHHHHhHhh---CCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 3 VKRKTPLQAKALLKFYSE---EKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 3 rTrfT~~Ql~~LE~~Fq~---~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
|++|+..|+..|+..|.. ++||+..+|..||..+||++.||++||||||+|+++..
T Consensus 11 R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 11 KGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 789999999999999987 59999999999999999999999999999999998865
No 69
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.05 E-value=3.6e-11 Score=122.66 Aligned_cols=57 Identities=25% Similarity=0.330 Sum_probs=54.4
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
-||.||..|+..|+..|..++||+...|..||..+||++.||++||||||+|+|+..
T Consensus 100 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 100 PRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 378999999999999999999999999999999999999999999999999999876
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.05 E-value=2.3e-11 Score=123.43 Aligned_cols=56 Identities=20% Similarity=0.336 Sum_probs=53.6
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGD 57 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~ 57 (1159)
.||.||..|+..|+..|..++||+...|..||..+||++.+|+|||||||+|+||.
T Consensus 99 ~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 99 KRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 48999999999999999999999999999999999999999999999999999984
No 71
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=2.8e-11 Score=114.94 Aligned_cols=57 Identities=25% Similarity=0.388 Sum_probs=54.7
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHc---------------------CCCCCceeeeccccccccccCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAAL---------------------DLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~L---------------------gLse~QVqVWFQNRRaK~KR~~ 58 (1159)
.||.|++.|+.+|+..|..++||+...|.+||..+ +|++.+|++||||||+++|+..
T Consensus 9 ~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr~~ 86 (102)
T 2da6_A 9 NRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAFRQ 86 (102)
T ss_dssp CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHHhh
Confidence 58999999999999999999999999999999999 7999999999999999999876
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.04 E-value=3.3e-11 Score=106.11 Aligned_cols=56 Identities=25% Similarity=0.353 Sum_probs=50.9
Q ss_pred cccCCHHHHHHHHHhHh---hCCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 3 VKRKTPLQAKALLKFYS---EEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 3 rTrfT~~Ql~~LE~~Fq---~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
..+||..|+.+|+..|. .++||+...+.+||..+||++.||++||||||+|+|+..
T Consensus 2 ~g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 60 (67)
T 3k2a_A 2 SGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPM 60 (67)
T ss_dssp ----CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHH
Confidence 35799999999999999 999999999999999999999999999999999999876
No 73
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=2.4e-09 Score=94.97 Aligned_cols=47 Identities=19% Similarity=0.389 Sum_probs=44.6
Q ss_pred HHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeecccccccc
Q 001088 8 PLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRD 54 (1159)
Q Consensus 8 ~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~ 54 (1159)
.+|+..|+..|..+++|+..++..||..+||+.++|+|||||||++.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 57899999999999999999999999999999999999999999853
No 74
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=98.62 E-value=4.8e-09 Score=97.46 Aligned_cols=55 Identities=29% Similarity=0.383 Sum_probs=51.4
Q ss_pred ccCCHHHHHHHHHhHhh---CCCCCHHHHHHHHHHcCCCCCceeeeccccccccccCC
Q 001088 4 KRKTPLQAKALLKFYSE---EKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDKGDN 58 (1159)
Q Consensus 4 TrfT~~Ql~~LE~~Fq~---~~YPs~~~R~eLA~~LgLse~QVqVWFQNRRaK~KR~~ 58 (1159)
..|+..+..+|+..|.. ++||+..+|.+||..+||++.||++||||+|+|.++..
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence 35889999999999987 99999999999999999999999999999999998765
No 75
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=97.75 E-value=2.9e-06 Score=66.75 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=17.4
Q ss_pred CceeeeccccccccccCCC
Q 001088 41 KQVRTWFIEKRRRDKGDNG 59 (1159)
Q Consensus 41 ~QVqVWFQNRRaK~KR~~~ 59 (1159)
+||+|||||||+|||+...
T Consensus 1 rQVkIWFQNRRaK~Kk~~~ 19 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVF 19 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHH
T ss_pred CCceeccHHHHHHHHHHhH
Confidence 5899999999999999883
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=92.50 E-value=0.078 Score=56.80 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=34.7
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcCC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALDL 38 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgL 38 (1159)
.|+.|++.|+..|+..|..++||+...|++||..+|.
T Consensus 145 ~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~ 181 (221)
T 2h8r_A 145 NRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNR 181 (221)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCh
Confidence 5889999999999999999999999999999999873
No 77
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=91.89 E-value=0.057 Score=56.82 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=34.4
Q ss_pred ccccCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHcC
Q 001088 2 EVKRKTPLQAKALLKFYSEEKYPTKSEMEGLAAALD 37 (1159)
Q Consensus 2 erTrfT~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~Lg 37 (1159)
.||.|++.|+..|+..|..++||+...|.+||..+|
T Consensus 118 ~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~ 153 (194)
T 1ic8_A 118 NRFKWGPASQQILFQAYERQKNPSKEERETLVEECN 153 (194)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC
Confidence 488999999999999999999999999999999997
No 78
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.58 E-value=2.7 Score=37.55 Aligned_cols=42 Identities=21% Similarity=0.453 Sum_probs=37.9
Q ss_pred HHHHHHHHHhHhhCCCCCHHHHHHHHHHcCCCCCceeeeccc
Q 001088 8 PLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIE 49 (1159)
Q Consensus 8 ~~Ql~~LE~~Fq~~~YPs~~~R~eLA~~LgLse~QVqVWFQN 49 (1159)
+.-.+.|+.+|...+......-..|+.+.+|+..||+-||-.
T Consensus 15 p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 15 PPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 344578999999999999999999999999999999999954
No 79
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=36.95 E-value=7.3 Score=38.91 Aligned_cols=32 Identities=19% Similarity=0.560 Sum_probs=26.5
Q ss_pred hhhcCCcchhhhhhhhccccccccCCCCcccccccc
Q 001088 958 AVKHGKRSYLDALARCERCHDLYWRDEKHCKICHTT 993 (1159)
Q Consensus 958 a~K~gkk~~~~~l~~C~~C~~~y~~~~~hC~~CH~t 993 (1159)
|.+-|| =+..+|..|...||+-...|+.|+..
T Consensus 39 ~l~~gr----L~~~rC~~CG~~~~PPr~~Cp~C~s~ 70 (145)
T 3irb_A 39 GLKQNK----IIGSKCSKCGRIFVPARSYCEHCFVK 70 (145)
T ss_dssp HHHTTC----CEEEECTTTCCEEESCCSEETTTTEE
T ss_pred HHHcCe----EEEEEeCCCCcEEcCchhhCcCCCCC
Confidence 455564 45788999999999999999999864
No 80
>2y9y_B IOC3, ISWI one complex protein 3; transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_B
Probab=33.56 E-value=96 Score=37.42 Aligned_cols=58 Identities=12% Similarity=0.281 Sum_probs=46.8
Q ss_pred HHHhHHHHHHHHhhcccc--ccccCCCHHHHHHHhccCC----------------------------------cchHHHH
Q 001088 376 TVKKLFKVFHFLCTYAGI--VDICSFTLDEFAQAFHDKD----------------------------------SMLLGKI 419 (1159)
Q Consensus 376 ~V~~LL~Vw~FL~~F~~v--L~L~pFTlDDFv~Al~d~d----------------------------------s~LL~EI 419 (1159)
.-+++.-|-.|++-|+.+ -.|+.|+|.||..+|..+. +-.+.-+
T Consensus 53 YA~DIifImsFinKF~~vf~~~l~nlgpQDfE~GL~L~p~~~~~~~~~~~~g~~~~~~~lY~d~~~~k~~~~~qD~MnlL 132 (624)
T 2y9y_B 53 YAGDIIKLMAFINKFSSFFHSDLQNLSFQDFEVGLDLYPGDPNGSAAGIVKGPEDTSLLLYPDFMAIKDIVYCQDKMNLL 132 (624)
T ss_dssp THHHHHHHHHHHHHTTTTSCTTTTTCCHHHHHHHHTCCSSCSSSSCSSEECSSSCCCEECHHHHSCSHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHhhccCcccCcChHhhhccccCCCCccccccccccccccccchhhhcccccccccccchHHHHHH
Confidence 358899999999999999 5789999999999997221 1356778
Q ss_pred HHHHHHHHHhhhhh
Q 001088 420 HVALLKLLLSDVEM 433 (1159)
Q Consensus 420 H~aLLk~ii~d~Ed 433 (1159)
.|+||++++....+
T Consensus 133 f~~LL~LvLN~~~~ 146 (624)
T 2y9y_B 133 FLSLLDLTFTENFD 146 (624)
T ss_dssp HHHHHHHHTTTCSC
T ss_pred HHHHHHHHcCcccc
Confidence 89999999976444
No 81
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=30.19 E-value=11 Score=37.75 Aligned_cols=26 Identities=15% Similarity=0.557 Sum_probs=23.4
Q ss_pred hhhhhhccccccccCCCCcccccccc
Q 001088 968 DALARCERCHDLYWRDEKHCKICHTT 993 (1159)
Q Consensus 968 ~~l~~C~~C~~~y~~~~~hC~~CH~t 993 (1159)
=+..+|..|...||+-...|+.|+.+
T Consensus 45 L~~~rC~~CG~~~fPPr~~Cp~C~s~ 70 (145)
T 2gnr_A 45 IIGSKCSKCGRIFVPARSYCEHCFVK 70 (145)
T ss_dssp CEEEECTTTCCEEESCCSEETTTTEE
T ss_pred EEEEEECCCCcEEeCCCCCCCCCCCC
Confidence 45678999999999999999999976
No 82
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.04 E-value=26 Score=22.88 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=14.9
Q ss_pred cccccccccccCcchhhHhhhh
Q 001088 986 HCKICHTTFELDFDLEERYAVH 1007 (1159)
Q Consensus 986 hC~~CH~tf~~~~~~e~~~~~h 1007 (1159)
-|..|.++|....+|...-..|
T Consensus 4 ~C~~C~~~f~~~~~l~~H~~~h 25 (29)
T 2m0e_A 4 KCPHCDKKFNQVGNLKAHLKIH 25 (29)
T ss_dssp CCSSCCCCCCTTTHHHHHHHHH
T ss_pred cCCCCCcccCCHHHHHHHHHHh
Confidence 5899999998876663333333
No 83
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=23.55 E-value=26 Score=23.10 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=13.0
Q ss_pred cccccccccccCcchhh
Q 001088 986 HCKICHTTFELDFDLEE 1002 (1159)
Q Consensus 986 hC~~CH~tf~~~~~~e~ 1002 (1159)
.|..|.+.|....+|..
T Consensus 4 ~C~~C~k~f~~~~~l~~ 20 (29)
T 1rik_A 4 ACPECPKRFMRSDHLTL 20 (29)
T ss_dssp ECSSSSCEESCSHHHHH
T ss_pred cCCCCCchhCCHHHHHH
Confidence 58999999988755533
No 84
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=21.86 E-value=30 Score=30.04 Aligned_cols=41 Identities=20% Similarity=0.488 Sum_probs=30.1
Q ss_pred hhhhhccccccccCCCCccccccccccc----CcchhhHhhhhhhhh
Q 001088 969 ALARCERCHDLYWRDEKHCKICHTTFEL----DFDLEERYAVHAATC 1011 (1159)
Q Consensus 969 ~l~~C~~C~~~y~~~~~hC~~CH~tf~~----~~~~e~~~~~h~~~c 1011 (1159)
.+..|..|.--.+ ...|+.|+....+ .|+.+.+|+.|-...
T Consensus 5 ~mr~C~~CgvYTL--k~~CP~CG~~T~~~hParfSp~Dky~~yR~~~ 49 (60)
T 2apo_B 5 RMKKCPKCGLYTL--KEICPKCGEKTVIPKPPKFSLEDRWGKYRRML 49 (60)
T ss_dssp CCEECTTTCCEES--SSBCSSSCSBCBCCCCCCCCTTCTTHHHHHHH
T ss_pred hceeCCCCCCEec--cccCcCCCCcCCCCCCCCCCCCcchHHHHHHH
Confidence 4678999955555 6779999988754 567788888776543
No 85
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=21.58 E-value=39 Score=35.02 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=29.3
Q ss_pred hhhhhhhcCC--cchhhhhhhhccccccccCCC--Ccccccccc
Q 001088 954 LNLNAVKHGK--RSYLDALARCERCHDLYWRDE--KHCKICHTT 993 (1159)
Q Consensus 954 ~~l~a~K~gk--k~~~~~l~~C~~C~~~y~~~~--~hC~~CH~t 993 (1159)
..|..++-|+ ++-.....+|..|.-+|=-++ ..||.|+..
T Consensus 137 ~~l~~l~~~~~~~~~~~~~~~C~~CG~~~~g~~~p~~CP~C~~~ 180 (191)
T 1lko_A 137 DFARNIKEGRVFLREQATKWRCRNCGYVHEGTGAPELCPACAHP 180 (191)
T ss_dssp HHHHHHHHTCSSEEEEEEEEEETTTCCEEEEEECCSBCTTTCCB
T ss_pred HHHHhhhcccccccCCCceEEECCCCCEeeCCCCCCCCCCCcCC
Confidence 4788888887 334455899999999984211 289999975
No 86
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=21.39 E-value=25 Score=23.09 Aligned_cols=15 Identities=27% Similarity=0.702 Sum_probs=11.9
Q ss_pred cccccccccccCcch
Q 001088 986 HCKICHTTFELDFDL 1000 (1159)
Q Consensus 986 hC~~CH~tf~~~~~~ 1000 (1159)
.|..|.++|....+|
T Consensus 4 ~C~~C~~~f~~~~~l 18 (29)
T 1ard_A 4 VCEVCTRAFARQEHL 18 (29)
T ss_dssp BCTTTCCBCSSHHHH
T ss_pred ECCCCCcccCCHHHH
Confidence 599999999875444
No 87
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.35 E-value=24 Score=23.13 Aligned_cols=17 Identities=24% Similarity=0.608 Sum_probs=12.5
Q ss_pred cccccccccccCcchhh
Q 001088 986 HCKICHTTFELDFDLEE 1002 (1159)
Q Consensus 986 hC~~CH~tf~~~~~~e~ 1002 (1159)
-|..|.++|....+|..
T Consensus 4 ~C~~C~k~f~~~~~l~~ 20 (29)
T 2m0f_A 4 KCRECGKQFTTSGNLKR 20 (29)
T ss_dssp ECTTTSCEESCHHHHHH
T ss_pred cCCCCCCccCChhHHHH
Confidence 48899999987655533
No 88
>1s05_A Cytochrome C-556, C556; THis is A model obtained by -restrained modeling and minimization., electron transport; HET: HEM; NMR {Rhodopseudomonas palustris} SCOP: a.24.3.2
Probab=20.86 E-value=14 Score=35.95 Aligned_cols=15 Identities=27% Similarity=0.685 Sum_probs=10.6
Q ss_pred HHHHHHhhhhHHHHH
Q 001088 934 QHRMWSRLQEFDAWI 948 (1159)
Q Consensus 934 ~~~~~~r~~~f~kw~ 948 (1159)
+-.+|..-.+|.+-+
T Consensus 72 ~p~IW~~~~~F~~~~ 86 (129)
T 1s05_A 72 SPKIWAERAKFDTEI 86 (129)
T ss_dssp CTHHHHTHHHHHHHH
T ss_pred cHHHHhCHHHHHHHH
Confidence 446788888887764
No 89
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=20.03 E-value=35 Score=32.36 Aligned_cols=26 Identities=31% Similarity=0.719 Sum_probs=21.8
Q ss_pred cccccccccccCcchhhHhhhhhhhhcCCCC
Q 001088 986 HCKICHTTFELDFDLEERYAVHAATCRGKGD 1016 (1159)
Q Consensus 986 hC~~CH~tf~~~~~~e~~~~~h~~~c~~k~~ 1016 (1159)
+|+.|++.... .+|+-|...|-+..+
T Consensus 72 ~C~nC~R~vaa-----~RFApHLeKCmg~GR 97 (99)
T 3mhs_C 72 HCENCGRDVSA-----NRLAAHLQRCLSRGA 97 (99)
T ss_dssp ECTTTCCEEEG-----GGHHHHHHHHSCC--
T ss_pred ECCCCCCCchh-----hhhHHHHHHHHccCC
Confidence 79999999986 699999999988764
Done!