Query 001089
Match_columns 1159
No_of_seqs 406 out of 2327
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 10:28:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001089.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001089hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l2p_A DNA ligase 3; DNA ligas 100.0 7E-100 2E-104 922.8 56.5 553 4-603 4-578 (579)
2 2hiv_A Thermostable DNA ligase 100.0 3.4E-94 1.2E-98 882.5 55.1 549 4-604 18-608 (621)
3 3gde_A DNA ligase; DNA-binding 100.0 1.8E-93 6E-98 864.6 53.3 528 7-603 4-552 (558)
4 2cfm_A Thermostable DNA ligase 100.0 4.2E-93 1.4E-97 865.4 50.2 532 7-603 1-552 (561)
5 1x9n_A DNA ligase I; 5'-adenyl 100.0 4E-93 1.4E-97 878.9 44.9 554 4-604 53-670 (688)
6 1vs0_A Putative DNA ligase-lik 100.0 4.1E-59 1.4E-63 529.2 25.2 307 218-592 3-309 (310)
7 1a0i_A DNA ligase; DNA replica 100.0 8E-50 2.7E-54 460.8 23.0 304 216-582 3-348 (348)
8 1fvi_A Chlorella virus DNA lig 100.0 5.1E-45 1.8E-49 411.0 22.6 265 223-587 2-297 (297)
9 3ii6_X DNA ligase 4; XRCC4, NH 100.0 5.5E-42 1.9E-46 380.3 21.2 248 652-910 6-263 (263)
10 4htp_A DNA ligase 4; helical d 100.0 4.9E-41 1.7E-45 366.4 20.9 215 1-216 8-238 (240)
11 1z56_C DNA ligase IV; DNA repa 100.0 1.6E-35 5.5E-40 329.1 7.3 246 653-911 2-262 (264)
12 1p16_A GTP--RNA, mRNA capping 100.0 6.5E-33 2.2E-37 324.2 18.3 312 194-602 20-363 (395)
13 1ckm_A MRNA capping enzyme; nu 100.0 1.9E-28 6.4E-33 279.5 19.1 236 242-602 72-313 (330)
14 3vnn_A DNA ligase 4; non-homol 99.9 3.4E-26 1.2E-30 229.4 8.5 127 247-376 1-135 (139)
15 3kyh_C MRNA-capping enzyme sub 99.9 8.2E-23 2.8E-27 238.4 16.9 187 240-458 60-264 (461)
16 3olc_X DNA topoisomerase 2-bin 99.8 7.4E-21 2.5E-25 214.2 13.6 183 654-914 103-288 (298)
17 3rtx_A MRNA-capping enzyme; gu 99.8 2.3E-21 8E-26 220.9 8.0 177 242-456 60-247 (343)
18 1kzy_C Tumor suppressor P53-bi 99.8 5.2E-19 1.8E-23 195.5 14.1 196 650-909 9-250 (259)
19 1l0b_A BRCA1; TANDEM-BRCT, thr 99.8 2.5E-18 8.4E-23 186.6 16.2 199 655-914 3-216 (229)
20 1t15_A Breast cancer type 1 su 99.7 2.8E-17 9.5E-22 176.2 15.9 197 658-912 3-212 (214)
21 2vxb_A DNA repair protein RHP9 99.7 2.7E-17 9.3E-22 179.8 15.4 204 655-904 1-240 (241)
22 3u3z_A Microcephalin; DNA repa 99.7 2.8E-17 9.7E-22 174.7 13.6 181 662-911 14-198 (199)
23 2nte_A BARD-1, BRCA1-associate 99.7 1.3E-16 4.6E-21 170.8 15.8 180 659-906 2-209 (210)
24 2etx_A Mediator of DNA damage 99.7 2.5E-16 8.6E-21 168.7 13.8 194 655-915 8-206 (209)
25 2ebw_A DNA repair protein REV1 99.5 2E-14 6.8E-19 135.0 8.9 88 652-741 8-96 (97)
26 3sqd_A PAX-interacting protein 99.5 3.2E-13 1.1E-17 145.5 14.0 191 656-910 13-218 (219)
27 3al2_A DNA topoisomerase 2-bin 99.5 2E-13 6.8E-18 148.6 12.4 211 658-912 8-230 (235)
28 1wf6_A Similar to S.pombe -RAD 99.4 1.9E-13 6.5E-18 135.7 9.6 93 797-912 35-128 (132)
29 4id3_A DNA repair protein REV1 99.4 4.4E-13 1.5E-17 124.2 8.2 85 653-739 4-90 (92)
30 2vug_A PAB1020; RNA, ligase, A 99.4 7E-12 2.4E-16 145.3 17.2 155 244-445 94-253 (389)
31 2d8m_A DNA-repair protein XRCC 99.3 1.7E-12 6E-17 128.3 8.0 91 653-745 19-110 (129)
32 2ep8_A Pescadillo homolog 1; A 99.3 1.7E-12 5.8E-17 122.2 7.2 81 652-738 8-99 (100)
33 3l46_A Protein ECT2; alternati 99.3 2.3E-12 7.9E-17 123.7 8.2 91 799-914 18-109 (112)
34 3pc6_A DNA repair protein XRCC 99.3 5E-12 1.7E-16 119.6 9.7 93 800-914 5-98 (104)
35 2cou_A ECT2 protein; BRCT doma 99.3 2.9E-12 9.8E-17 123.0 7.9 90 799-913 9-99 (109)
36 3pc6_A DNA repair protein XRCC 99.3 4E-12 1.4E-16 120.3 8.4 88 654-741 5-95 (104)
37 3l3e_A DNA topoisomerase 2-bin 99.3 2.9E-12 1E-16 122.5 6.9 89 651-740 10-102 (107)
38 4id3_A DNA repair protein REV1 99.3 9.8E-12 3.4E-16 115.0 9.0 85 799-910 4-91 (92)
39 3pa6_A Microcephalin; BRCT dom 99.2 1E-11 3.5E-16 118.4 8.5 95 799-914 4-99 (107)
40 2coe_A Deoxynucleotidyltransfe 99.2 2.6E-11 8.9E-16 117.2 10.1 96 798-909 16-112 (120)
41 3l46_A Protein ECT2; alternati 99.2 5.1E-12 1.8E-16 121.3 5.1 85 654-739 19-104 (112)
42 2cou_A ECT2 protein; BRCT doma 99.2 5.3E-12 1.8E-16 121.1 3.9 88 653-741 9-97 (109)
43 3qwu_A DNA ligase; structural 99.2 1.2E-10 4.3E-15 132.0 15.5 151 238-426 66-222 (370)
44 1wf6_A Similar to S.pombe -RAD 99.2 6.9E-11 2.3E-15 117.3 10.5 99 642-742 26-128 (132)
45 3l41_A BRCT-containing protein 99.2 7.4E-11 2.5E-15 127.0 10.5 180 676-908 21-212 (220)
46 2ebw_A DNA repair protein REV1 99.1 4.8E-11 1.7E-15 111.8 7.6 85 799-910 9-95 (97)
47 2jw5_A DNA polymerase lambda; 99.1 7.9E-12 2.7E-16 119.2 2.1 98 798-912 7-105 (106)
48 2d8m_A DNA-repair protein XRCC 99.1 1.9E-10 6.5E-15 113.6 9.9 90 801-915 21-111 (129)
49 3olc_X DNA topoisomerase 2-bin 99.1 2.3E-10 7.8E-15 128.8 10.5 148 678-908 28-187 (298)
50 3l3e_A DNA topoisomerase 2-bin 99.1 1.9E-10 6.4E-15 109.9 8.3 93 799-913 12-105 (107)
51 2ep8_A Pescadillo homolog 1; A 99.0 1.5E-09 5.1E-14 102.2 9.5 80 799-909 9-100 (100)
52 3pa6_A Microcephalin; BRCT dom 98.9 2E-09 6.7E-14 102.7 8.3 85 655-739 6-94 (107)
53 3pc7_A DNA ligase 3; DNA repai 98.9 1.4E-09 4.9E-14 99.2 5.8 74 799-906 13-88 (88)
54 3pc7_A DNA ligase 3; DNA repai 98.8 1.4E-09 4.9E-14 99.2 3.9 73 653-735 13-87 (88)
55 2dun_A POL MU, DNA polymerase 98.8 7E-09 2.4E-13 100.8 8.0 97 800-910 8-106 (133)
56 3ef0_A RNA polymerase II subun 98.7 1.6E-08 5.6E-13 116.7 9.1 86 654-739 280-370 (372)
57 3ef1_A RNA polymerase II subun 98.7 1.3E-08 4.4E-13 119.0 6.9 87 653-739 349-440 (442)
58 3u3z_A Microcephalin; DNA repa 98.6 1.3E-08 4.5E-13 107.9 4.4 79 653-738 116-195 (199)
59 3ef0_A RNA polymerase II subun 98.6 5.3E-08 1.8E-12 112.4 7.8 90 801-910 281-371 (372)
60 2jw5_A DNA polymerase lambda; 98.6 2.2E-08 7.6E-13 95.3 3.3 89 652-740 7-103 (106)
61 1t15_A Breast cancer type 1 su 98.5 1.3E-07 4.3E-12 100.9 7.7 87 653-739 112-209 (214)
62 3ef1_A RNA polymerase II subun 98.5 9.9E-08 3.4E-12 111.5 7.0 90 801-910 351-441 (442)
63 2nte_A BARD-1, BRCA1-associate 98.4 2E-07 6.9E-12 99.4 7.1 82 654-736 102-209 (210)
64 2coe_A Deoxynucleotidyltransfe 98.4 5E-07 1.7E-11 87.3 7.9 91 653-743 17-116 (120)
65 1l0b_A BRCA1; TANDEM-BRCT, thr 98.4 4.1E-07 1.4E-11 98.1 7.8 87 655-742 116-213 (229)
66 3sqd_A PAX-interacting protein 98.4 4.2E-07 1.4E-11 97.7 7.6 90 800-913 11-100 (219)
67 1l7b_A DNA ligase; BRCT, autos 98.3 6.9E-07 2.4E-11 82.7 7.0 76 653-729 4-80 (92)
68 2etx_A Mediator of DNA damage 98.3 8.1E-07 2.8E-11 94.8 7.2 85 801-912 8-92 (209)
69 3ii6_X DNA ligase 4; XRCC4, NH 98.2 2.9E-06 1E-10 93.7 9.2 88 799-911 7-96 (263)
70 2k6g_A Replication factor C su 98.2 3.6E-06 1.2E-10 80.3 8.4 77 654-730 30-108 (109)
71 1z56_C DNA ligase IV; DNA repa 98.2 6.5E-07 2.2E-11 98.9 3.6 87 652-739 156-260 (264)
72 2cok_A Poly [ADP-ribose] polym 98.1 4.5E-06 1.5E-10 80.0 7.3 83 654-737 8-104 (113)
73 2dun_A POL MU, DNA polymerase 98.1 2.3E-06 8E-11 83.2 5.2 92 653-744 7-110 (133)
74 1kzy_C Tumor suppressor P53-bi 98.1 2.3E-06 8E-11 94.3 5.9 101 799-912 12-137 (259)
75 2ebu_A Replication factor C su 98.1 6.4E-06 2.2E-10 78.8 8.0 77 654-730 20-98 (112)
76 2vxb_A DNA repair protein RHP9 98.0 7.3E-06 2.5E-10 89.3 7.8 92 801-913 1-119 (241)
77 1ik9_C DNA ligase IV; DNA END 98.0 2.6E-06 9E-11 64.8 2.7 34 746-779 2-35 (37)
78 3al2_A DNA topoisomerase 2-bin 98.0 1.3E-05 4.3E-10 87.1 8.6 87 803-913 7-96 (235)
79 3l41_A BRCT-containing protein 97.9 9.1E-06 3.1E-10 87.3 6.7 83 804-913 7-89 (220)
80 2hvq_A ORF1, hypothetical 37.6 97.7 0.0003 1E-08 80.0 14.1 107 241-366 25-146 (335)
81 1ta8_A DNA ligase, NAD-depende 97.6 5.6E-05 1.9E-09 85.3 6.8 172 246-444 114-319 (332)
82 2l42_A DNA-binding protein RAP 97.6 3.6E-05 1.2E-09 70.1 4.2 80 653-739 8-93 (106)
83 1s68_A RNA ligase 2; ribonucle 97.6 0.00026 8.9E-09 77.4 11.7 107 241-366 24-145 (249)
84 2l42_A DNA-binding protein RAP 97.4 8.4E-05 2.9E-09 67.8 3.7 88 800-914 9-98 (106)
85 1b04_A Protein (DNA ligase); D 97.4 0.00014 4.9E-09 81.6 6.2 167 245-438 107-304 (318)
86 3t7k_A RTT107, regulator of TY 97.3 0.0025 8.4E-08 68.4 13.6 174 665-901 27-240 (256)
87 4glw_A DNA ligase; inhibitor, 97.1 0.0008 2.7E-08 75.5 8.5 155 243-426 100-281 (305)
88 4glx_A DNA ligase; inhibitor, 96.9 0.0024 8.3E-08 77.4 10.9 225 245-509 108-368 (586)
89 1zau_A DNA ligase; AMP; HET: D 96.8 0.00018 6.3E-09 81.1 0.1 167 245-438 116-319 (328)
90 1xk5_A Snurportin-1; protein-R 96.7 0.0053 1.8E-07 64.4 9.7 180 225-447 5-187 (204)
91 1l7b_A DNA ligase; BRCT, autos 96.7 0.0028 9.5E-08 58.5 6.8 76 799-899 4-80 (92)
92 3uq8_A DNA ligase; adenylated 96.6 0.0085 2.9E-07 67.4 11.8 158 246-428 108-294 (322)
93 3jsl_A DNA ligase; NAD+-depend 96.5 0.0046 1.6E-07 69.4 8.1 174 244-444 104-311 (318)
94 3gjx_B Snurportin-1; transport 96.3 0.0096 3.3E-07 66.7 9.2 179 225-446 106-287 (365)
95 2c5u_A RNA ligase, T4 RNA liga 96.2 0.028 9.4E-07 64.9 13.1 142 245-445 93-246 (375)
96 2k6g_A Replication factor C su 96.2 0.012 4.1E-07 55.9 8.3 78 800-900 30-108 (109)
97 1xdn_A RNA editing ligase MP52 96.2 0.011 3.9E-07 64.2 8.7 119 243-366 31-190 (277)
98 2ebu_A Replication factor C su 95.9 0.02 6.7E-07 54.7 8.1 78 800-900 20-98 (112)
99 2owo_A DNA ligase; protein-DNA 95.9 0.027 9.3E-07 69.3 11.5 221 246-508 109-367 (671)
100 2cok_A Poly [ADP-ribose] polym 95.5 0.033 1.1E-06 53.2 8.0 82 801-907 9-104 (113)
101 3sgi_A DNA ligase; HET: DNA AM 95.5 0.0084 2.9E-07 72.8 4.6 194 246-473 117-350 (615)
102 1dgs_A DNA ligase; AMP complex 95.4 0.0026 8.9E-08 78.1 0.0 79 654-733 585-664 (667)
103 1dgs_A DNA ligase; AMP complex 94.9 0.046 1.6E-06 67.2 8.7 191 246-471 110-336 (667)
104 2owo_A DNA ligase; protein-DNA 94.8 0.0048 1.7E-07 75.8 0.0 75 654-728 595-670 (671)
105 4e6n_A Metallophosphoesterase; 94.6 0.095 3.2E-06 58.9 9.5 179 234-428 67-336 (427)
106 2hiv_A Thermostable DNA ligase 92.0 0.12 4E-06 63.6 5.5 87 122-208 19-120 (621)
107 3huf_A DNA repair and telomere 89.4 0.22 7.4E-06 55.5 3.9 68 657-728 113-186 (325)
108 4gns_A Chitin biosynthesis pro 87.2 0.94 3.2E-05 45.3 6.4 84 657-740 162-253 (290)
109 4gns_A Chitin biosynthesis pro 86.1 1.3 4.4E-05 44.3 6.8 95 802-914 161-257 (290)
110 2cfm_A Thermostable DNA ligase 84.3 0.73 2.5E-05 56.0 5.0 85 125-209 2-100 (561)
111 3gde_A DNA ligase; DNA-binding 84.1 1.1 3.7E-05 54.4 6.4 85 124-208 4-103 (558)
112 3qbz_A DDK kinase regulatory s 80.2 2.3 8E-05 42.4 5.9 60 800-859 56-118 (160)
113 1x9n_A DNA ligase I; 5'-adenyl 79.2 1.5 5E-05 54.5 5.1 87 121-207 53-156 (688)
114 3t7k_A RTT107, regulator of TY 78.7 2 6.8E-05 46.2 5.3 71 833-914 40-122 (256)
115 3oq0_A DBF4, protein DNA52; DD 77.1 4.8 0.00016 39.9 7.0 61 799-859 17-80 (151)
116 3oq4_A DBF4, protein DNA52; DD 70.6 9.4 0.00032 37.1 7.1 56 804-859 6-63 (134)
117 3huf_A DNA repair and telomere 67.8 7.1 0.00024 43.5 6.4 58 830-898 127-186 (325)
118 4htp_A DNA ligase 4; helical d 57.4 12 0.00041 40.2 5.9 87 122-208 12-134 (240)
119 3l2p_A DNA ligase 3; DNA ligas 42.5 60 0.002 39.3 9.3 86 5-113 116-201 (579)
120 3qbz_A DDK kinase regulatory s 36.1 32 0.0011 34.4 4.4 49 655-703 57-117 (160)
121 2ezd_A High mobility group pro 24.0 31 0.0011 23.6 1.3 16 969-984 4-19 (26)
122 2k2w_A Recombination and DNA r 23.8 76 0.0026 30.2 4.5 34 654-690 11-44 (118)
123 2k2w_A Recombination and DNA r 20.1 1.1E+02 0.0038 29.1 4.8 35 799-846 10-44 (118)
No 1
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=100.00 E-value=7.2e-100 Score=922.82 Aligned_cols=553 Identities=25% Similarity=0.415 Sum_probs=451.4
Q ss_pred CCCCcHHHHHHHHHHHHhhCChHHHHHHHHHHHhhcCCC----chHHHHHHHhCCCCCCCccccCCCHHHHHHHHHHHhC
Q 001089 4 TEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDS----VDYFSALRLILPSLDRERGSYGLKESVLANCLIDALG 79 (1159)
Q Consensus 4 ~~~~~F~~l~~lle~i~~~~~~~~K~~~l~~~l~~~~~~----~d~~p~lrLllP~~d~~r~~ygike~~L~k~~~~~lg 79 (1159)
.++|+|++||++|++|++++++++|+++|++||.+|..+ .++||++|+|+|..++ ++|||++++|+|+|++++|
T Consensus 4 ~~d~~F~~f~~l~~~ie~~s~r~~k~~il~~~~~~~~~~~~~~~~~y~~~~~l~P~~~~--~~~gi~ek~l~k~~~~~~g 81 (579)
T 3l2p_A 4 HKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFHGDVYLTVKLLLPGVIK--TVYNLNDKQIVKLFSRIFN 81 (579)
T ss_dssp SGGGBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCC-------CCHHHHHHHHCTTTSC--CCCSCCHHHHHHHHHHHHT
T ss_pred cccCcHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCCcccccchHHHHHHHhCCCccC--cccCCcHHHHHHHHHHHHC
Confidence 457999999999999999999999999999999998543 5899999999999974 6999999999999999999
Q ss_pred CCcChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhcc--CC-CCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Q 001089 80 MSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQ--GM-ISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKT 156 (1159)
Q Consensus 80 l~~~s~~~~~L~~wk~~~~~~~~GD~~~~a~~vl~~r~--~~-~~~~LTi~eVn~~Ld~LA~~~~~~~k~~il~~ll~~~ 156 (1159)
++.+. ..++ | ..||||.+|..++..+. .. .+++|||.+||+.|++||..+|...+..+|..|+.+|
T Consensus 82 ~~~~~--~~~~--~-------~~GD~~~~~~~~~~~~~~~~~~~~~~LTv~~V~~~L~~ia~~~g~~sq~~~l~~l~~~~ 150 (579)
T 3l2p_A 82 CNPDD--MARD--L-------EQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRC 150 (579)
T ss_dssp SCHHH--HHHH--G-------GGSCHHHHHHHHHHSCSSSCCCSSCCCBHHHHHHHHHHHHTCCSHHHHHHHHHHHHTTC
T ss_pred cCHHH--HHHH--H-------HcCCHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHhccCcHHHHHHHHHHHHhC
Confidence 99753 3333 3 35999999888765432 22 3579999999999999999998888888999999999
Q ss_pred CHHHHHHHHHHHHhhhccCCcccccccccCccHHHHhhhcCCHHHHHHHHhhhhc---------cccccCcccCCccccc
Q 001089 157 NAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQ---------RHKRQDIEVGKAVRPQ 227 (1159)
Q Consensus 157 s~~E~k~l~RiIlkdLriGi~e~til~~~hpda~~~~~~~~dL~~V~~~L~~~~~---------~~~~~~i~~g~p~~PM 227 (1159)
|+.|+|||+|||+++||+|+++++|+.+|||+|.++|++++||+.||+.+.+... .+....+.+|.||+||
T Consensus 151 ~~~E~k~l~R~i~~~lriG~~e~~vl~a~~~~a~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~PM 230 (579)
T 3l2p_A 151 TANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTPVQPM 230 (579)
T ss_dssp CSHHHHHHHHHHTTCCSSSCCHHHHHHTTCTTHHHHHHHSCCHHHHHHHHHHHHHSCC--------CCCCCCTTSCCCCC
T ss_pred CHHHHHHHHHHHHhhhhcccchhHHHHHhCHHHHHHHhhcCCHHHHHHHHHhhchhhhcccccccccccccCCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999988764211 1223557889999999
Q ss_pred cccccCChHHHHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEecCCCCcCc-chhhHHHHHHHhc-ccCceeecceEEE
Q 001089 228 LAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGHAMSKIIEQNV-LVDRCILDGEMLV 305 (1159)
Q Consensus 228 LA~~~~~~~~~~~k~~~~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~t~-~~p~l~~~l~~~~-~~~~~ILDGElv~ 305 (1159)
||+++.+++++++++. ..|++|+||||+|+|+|++|+.+++|||||++++. ..+.+.+.+...+ ...+||||||||+
T Consensus 231 LA~~~~~~~~~~~~~~-~~~~~E~K~DG~R~qih~~g~~v~l~SR~g~~~~p~~~~~l~~~l~~~~~~~~~~iLDGElv~ 309 (579)
T 3l2p_A 231 LAEACKSVEYAMKKCP-NGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDYIPQAFPGGHSMILDSEVLL 309 (579)
T ss_dssp EEEECCCHHHHHHHCT-TCEEEEECCCSEEEEEEEETTEEEEECTTSCBCCGGGTTTGGGTHHHHSTTCSEEEEEEEEEE
T ss_pred cCCcCCCHHHHHhhCC-CCeEEEEccCcEEEEEEEECCEEEEECCCCCccChhHHHHHHHHHHHhcCcCCceEEEeEEEE
Confidence 9999999988888875 46999999999999999999999999999999842 2223333333333 2468999999999
Q ss_pred EeCCCCcccccccHHHHHHHhhcCCCCCCCeEEEEEeeeecCCccccCCCHHHHHHHHHHhhccCCCcceeeccCCCCCc
Q 001089 306 WDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNS 385 (1159)
Q Consensus 306 ~d~~~~~~~pFg~lq~i~~~~r~~~~~~~~~~~~vFDiL~lnG~~l~~~pl~eRr~~L~~~i~~~~~~~~i~~p~~~~~~ 385 (1159)
||+.+++++||+.++...+.. ....++||++|||||+||++|++.||.+||++|++++.+.++++.+.
T Consensus 310 ~d~~~g~~~~F~~L~~~~~~~----~~~~~v~~~vFDlL~l~G~~L~~~Pl~eRr~~L~~~~~~~~~~i~~~-------- 377 (579)
T 3l2p_A 310 IDNKTGKPLPFGTLGVHKKAA----FQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFS-------- 377 (579)
T ss_dssp BCTTTCCBCCGGGGSHHHHHH----CSSCCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHCCCBTTTEEEC--------
T ss_pred EeCCCCcccCHHHHHHHhhhh----cccCCeEEEEEEeeccCCCccccCCHHHHHHHHHHHhhcCCCeEEEe--------
Confidence 998778889999887543221 12468999999999999999999999999999999998877665432
Q ss_pred cccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEccccccc---CCcccEEEEEEEeC
Q 001089 386 HVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA---GSDLDVLIIGGYYG 462 (1159)
Q Consensus 386 ~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKiKpey~~~---g~~lDlvVIG~~~G 462 (1159)
....+.+.+++.++|+++++.|+||||+|+++|+|.||+| +|+|+|++|+++ ++++|+||||+++|
T Consensus 378 ---------~~~~~~~~~~~~~~~~~a~~~g~EGlv~K~~ds~Y~~Grr--~WlK~K~~y~~~g~~~~t~D~vViG~~~G 446 (579)
T 3l2p_A 378 ---------EMKRVTKALDLADMITRVIQEGLEGLVLKDVKGTYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFYG 446 (579)
T ss_dssp ---------CEEEECSHHHHHHHHHHHHHTTCCCEEEEESSCCCCTTCE--EEEEECTTTCC---CCEEEEEEEEEEECC
T ss_pred ---------eeEEcCCHHHHHHHHHHHHHhCCCceEEecCcCCCCCCCe--eeEEEechhhccccccccccEEEEEEEeC
Confidence 1233567899999999999999999999999999999988 899999999874 47999999999999
Q ss_pred CCCCCCccceEEEEEecCCCCCCCCceEEEEEEecCCCCHHHHHHHHHhhcccccccCCCCCCCCCcccccCCCCCCCcE
Q 001089 463 SGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDV 542 (1159)
Q Consensus 463 ~Grr~g~~gsfllg~~d~~~~~~~~~~f~~v~kVgtG~sdeel~~l~~~l~~~~~~~~~~~~~pP~~~~~~~~~~~~Pdv 542 (1159)
+|+++|.+|+|+||++++++ +.|+++|+||||||++++++|.+.|.+++... +...+|.|+.+. ....||+
T Consensus 447 ~Gkr~g~~g~lllg~~d~~~-----~~l~~vgkvgtGftd~~l~~l~~~l~~~~~~~--~~~~~~~~~~~~--~~~~pd~ 517 (579)
T 3l2p_A 447 QGSKGGMMSIFLMGCYDPGS-----QKWCTVTKCAGGHDDATLARLQNELDMVKISK--DPSKIPSWLKVN--KIYYPDF 517 (579)
T ss_dssp CTTSCSSCCEEEEEEECTTT-----SSEEEEEEECTTCCHHHHHHTTTSSCCCCCCC-----------------------
T ss_pred CCCCCCceeEEEEEEEeCCC-----CeEEEecCccCCCCHHHHHHHHHHhhcccccc--CCccCCceeecC--CCCCCcE
Confidence 99999999999999998653 37999999999999999999999999987642 112246676653 3568999
Q ss_pred EEeCCcceEEEEEEeeeeeeeccccc-CCceeeCceeeeeecCCCccCcCCHHHHHHHHHcc
Q 001089 543 WIESPEKSIILSITSDIRTIRSEVFS-APYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSS 603 (1159)
Q Consensus 543 wi~~P~~s~Vlev~a~i~~i~s~~~~-~g~tLRFPR~~riR~DK~~~d~~t~~el~~l~~~~ 603 (1159)
|+..|+.++||||+++.. ..|+.|+ +|+|||||||.|||+||+|+||+|++++.+||+.+
T Consensus 518 ~~~~P~~~~V~Ei~~~~i-~~S~~~~~~G~sLRFPR~~riR~DK~~~ea~t~~~l~~l~~~~ 578 (579)
T 3l2p_A 518 IVPDPKKAAVWEITGAEF-SKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLS 578 (579)
T ss_dssp -------CEEEEEEESCE-EECTTSSSTTEEESSCEECCCCSSCCSSSSCBHHHHHHHHHTC
T ss_pred EEecCCCCeEEEEEeeEE-eecCCcccCCEEEECCeEEEEeCCCChHHCCCHHHHHHHHhhc
Confidence 985588889999997643 3677775 79999999999999999999999999999999754
No 2
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=100.00 E-value=3.4e-94 Score=882.48 Aligned_cols=549 Identities=26% Similarity=0.470 Sum_probs=472.3
Q ss_pred CCCCcHHHHHHHHHHHHhhCChHHHHHHHHHHHhhcCCCchHHHHHHHh----CCCCCCCccccCCCHHHHHHHHHHHhC
Q 001089 4 TEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLI----LPSLDRERGSYGLKESVLANCLIDALG 79 (1159)
Q Consensus 4 ~~~~~F~~l~~lle~i~~~~~~~~K~~~l~~~l~~~~~~~d~~p~lrLl----lP~~d~~r~~ygike~~L~k~~~~~lg 79 (1159)
..+|+|+.||++|++|+.++++++|+++|.+||.++ .+++++|+++|+ +|..+. |++|||+++.|++++++++|
T Consensus 18 ~~~~~f~~~~~~~~~l~~t~~r~~k~~~l~~~~~~~-~~~d~~~~~~ll~~~l~P~~~~-~~~~gi~~~~L~k~~~~~~g 95 (621)
T 2hiv_A 18 GSHMEFKVIAEYFDKLEKISSRLQLTALLADLLSKS-DKTIIDKVVYIIQGKLWPDFLG-YPELGIGEKFLIKAISIATN 95 (621)
T ss_dssp ---CBTHHHHHHHHHHHHCCCHHHHHHHHHHHHHTS-CGGGHHHHHHHTTTCSSCGGGC-CCCCCCCHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHhc-CchHHHHHHHHHhCCcCccccc-ccccCCCHHHHHHHHHHHHC
Confidence 567999999999999999999999999999999986 478899999997 465552 44999999999999999999
Q ss_pred CCcChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhccC--C-------CCCCCCHHHHHHHHHHHHhhhh---HHHHHH
Q 001089 80 MSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQG--M-------ISGGLTIKELNDLLDRLASSEN---RAEKIS 147 (1159)
Q Consensus 80 l~~~s~~~~~L~~wk~~~~~~~~GD~~~~a~~vl~~r~~--~-------~~~~LTi~eVn~~Ld~LA~~~~---~~~k~~ 147 (1159)
++++.... .| ...||||++|+.+++++.. . .+++|||.+||+.|++||..++ +++|..
T Consensus 96 ~~~~~~~~----~~------~~~GDlg~~a~~~~~~~~~~~~~~f~~~~~~~~ltv~~V~~~L~~la~~~g~~s~~~k~~ 165 (621)
T 2hiv_A 96 TDENSVEN----LY------KTIGDLGEVARRLKSKQQSTGILGFLGTTSKESLTVDEVYSTLSKVALTTGEGSRDLKIR 165 (621)
T ss_dssp CCHHHHHH----HH------HHHCCHHHHHHHHHHTC-------------CCCCBHHHHHHHHHHHHHCCSTTHHHHHHH
T ss_pred cCHHHHHH----HH------HhcCCHHHHHHHHHhhccccccccccccCCCCCCcHHHHHHHHHHHHhccCcccHHHHHH
Confidence 99765432 34 3479999999999987652 1 3578999999999999999876 467889
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhhccCCcccccccc----cC------ccHHHHhhhcCCHHHHHHHHhhhh-cccccc
Q 001089 148 VLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHE----FH------PDAEDLFNVTCDLKLVCEKLKDRN-QRHKRQ 216 (1159)
Q Consensus 148 il~~ll~~~s~~E~k~l~RiIlkdLriGi~e~til~~----~h------pda~~~~~~~~dL~~V~~~L~~~~-~~~~~~ 216 (1159)
+|..||.+|++.|++||+|||+++||||+++++|+.+ |+ ++++++|++++||+.||+.|.++. .++...
T Consensus 166 ~l~~ll~~~~~~E~k~l~Rli~~~lRiG~~~~~vl~ala~a~~~~~~~~~~v~~~~~~~~dl~~v~~~l~~~g~~~l~~~ 245 (621)
T 2hiv_A 166 LLAGLLKKADPLEAKFLVRFVEGRLRVGIGDATVLDAMAIAFGGGQSASEIIERAYNLRADLGNIAKIIVEKGIEALKTL 245 (621)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHSSSGGGHHHHHHHHHHSCCHHHHHHHHHHHCGGGGTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHcCCCccCccHHHHHHHHHHHhccccccHHHHHHHHhcCCCHHHHHHHHHhcCccccccC
Confidence 9999999999999999999999999999999999984 33 568889999999999999998743 456778
Q ss_pred CcccCCccccccccccCChHHHHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEecCCCCcCcchhhHHHHHHHhcccCc
Q 001089 217 DIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDR 296 (1159)
Q Consensus 217 ~i~~g~p~~PMLA~~~~~~~~~~~k~~~~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~t~~~p~l~~~l~~~~~~~~ 296 (1159)
.+++|.||+||||+++..++++++++++ +|++|+||||+|||+|++|+.+++|||+|+++|..+|++.+.+...+...+
T Consensus 246 ~~~~~~pv~PmLA~~~~~~~~~l~~~~~-~~~~E~K~DG~R~qi~~~g~~v~l~SR~g~~~t~~fP~l~~~~~~~l~~~~ 324 (621)
T 2hiv_A 246 KPQVGIPIRPMLAERLSNPEEILKKMGG-NAIVDYKYDGERAQIHKKEDKIFIFSRRLENITSQYPDVVDYVSKYIEGKE 324 (621)
T ss_dssp CCCTTSCCCCCEEEECSCHHHHHHHTTT-CEEEEEECSSEEEEEEEETTEEEEECTTCCBCGGGCHHHHHHHHHHBCCSS
T ss_pred CCCCCCCCCCeeCCccCchhHHHhhcCC-cEEEEEEEcceeEEEEEcCCEEEEEcCCCcCcHhhhhhHHHHHHHhCCCcC
Confidence 8999999999999999988888888854 799999999999999999999999999999999999999888765665689
Q ss_pred eeecceEEEEeCCCCcccccccHHHHHHHhhcCC---CCCCCeEEEEEeeeecCCccccCCCHHHHHHHHHHhhccCCCc
Q 001089 297 CILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGL---SSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGR 373 (1159)
Q Consensus 297 ~ILDGElv~~d~~~~~~~pFg~lq~i~~~~r~~~---~~~~~~~~~vFDiL~lnG~~l~~~pl~eRr~~L~~~i~~~~~~ 373 (1159)
||||||||+||+.+++++||+.+|.. ++ +... ....+++|++|||||+||++|++.||.+||++|++++.+. ++
T Consensus 325 ~iLDGElv~~d~~~g~~l~F~~L~~r-~~-~~~~~~~~~~~~v~~~vFDlL~l~G~~l~~~pl~eRr~~L~~~~~~~-~~ 401 (621)
T 2hiv_A 325 FIIEGEIVAIDPESGEMRPFQELMHR-KR-KSDIYEAIKEYPVNVFLFDLMYYEDVDYTTKPLEARRKLLESIVKPN-DY 401 (621)
T ss_dssp EEEEEEEEEBCTTTCCBCCTHHHHHH-HH-CSCHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC-SS
T ss_pred eEEeEEEEEeecCCCCcCCHHHHhhh-cc-ccchhhhcccCceEEEEEeccccCCCccccCCHHHHHHHHHHHhCcC-Cc
Confidence 99999999999777888999888765 21 1111 0135899999999999999999999999999999998764 44
Q ss_pred ceeeccCCCCCccccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecC--CCCCcCCCCCCCeEEEccccccc-CC
Q 001089 374 LETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDL--GSKWEPGDRSGKWLKLKPEYIRA-GS 450 (1159)
Q Consensus 374 ~~i~~p~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~--ds~Y~pGkRs~~WlKiKpey~~~-g~ 450 (1159)
+.+. ..+.+.+.++++++|++++++|+||||+|++ +|+|.||+|+.+|+|+|++|+++ |+
T Consensus 402 i~~~-----------------~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~~~ds~Y~~G~Rs~~WlK~K~~~~~~~~d 464 (621)
T 2hiv_A 402 VKIA-----------------HHIQANNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMAD 464 (621)
T ss_dssp EEEC-----------------CEEEESSHHHHHHHHHHHHHTTCCEEEEECCSTTCCCCTTCEEEEEEEEETTCTTSSCE
T ss_pred EEEe-----------------eeEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCCCccCCCcCCCeEEEechhccCcCc
Confidence 4332 1345778999999999999999999999999 99999999999999999999984 78
Q ss_pred cccEEEEEEEeCCCCCCCccceEEEEEecCCCCCCCCceEEEEEEecCCCCHHHHHHHHHhhcccccccCCCCCCCCCcc
Q 001089 451 DLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFY 530 (1159)
Q Consensus 451 ~lDlvVIG~~~G~Grr~g~~gsfllg~~d~~~~~~~~~~f~~v~kVgtG~sdeel~~l~~~l~~~~~~~~~~~~~pP~~~ 530 (1159)
++|+||||+++|+|+++|.+|+|+|||+++++ +.|++||+||||||++++++|.+.|++++... .||.+.
T Consensus 465 t~D~vViG~~~g~Gkr~g~~g~lllg~~d~~~-----~~l~~vgkvgtGftd~~~~~l~~~l~~~~~~~-----~p~~~~ 534 (621)
T 2hiv_A 465 TVDLVVVGGFYGKGKRGGKISSLLMAAYNPKT-----DSFESVCKVASGFSDEQLDELQKKLMEIKRDV-----KHPRVN 534 (621)
T ss_dssp EEEEEEEEEEECSGGGTTSEEEEEEEEEETTT-----TEEEEEEEECBSCCHHHHHHHHHHHHTTEESS-----CCTTEE
T ss_pred eeEEEEEEEEcCCCCCCCcccceEEEEEeCCC-----CeEEEEeeeCCCCCHHHHHHHHHHHhhhccCC-----CCCCcc
Confidence 99999999999999999999999999998653 38999999999999999999999999998741 244331
Q ss_pred cccCCCCCCCcEEEeCCcceEEEEEEeeeeeeeccccc---------CCceeeCceeeeeecCCCccCcCCHHHHHHHHH
Q 001089 531 QVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFS---------APYSLRFPRIDRVRYDKPWHDCLDVQSFVELVH 601 (1159)
Q Consensus 531 ~~~~~~~~~Pdvwi~~P~~s~Vlev~a~i~~i~s~~~~---------~g~tLRFPR~~riR~DK~~~d~~t~~el~~l~~ 601 (1159)
...+|++||+ |. +|+||+++.. ..|+.|+ .|++||||||.|||+||+|+||+|+++|.+|++
T Consensus 535 -----~~~~~~vwv~-P~--~V~EV~~~~~-t~s~~~~a~~~~~~~~~G~sLRfPrf~r~R~DK~~~ea~t~~~l~~l~~ 605 (621)
T 2hiv_A 535 -----SKMEPDIWVE-PV--YVAEIIGSEI-TISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILEMYN 605 (621)
T ss_dssp -----CSSCCSEEEC-SC--CEEEEEESEE-EEETTCCTTTTTSSTTCEEEEESCEEEEECTTCCGGGSCBHHHHHHHHH
T ss_pred -----cCCCceEEec-Cc--eEEEEEEEEE-EcCcccccccccccCCCCceEEcCEEEEEeCCCChHHCCCHHHHHHHHH
Confidence 2468999998 75 8999997643 3577888 689999999999999999999999999999997
Q ss_pred ccC
Q 001089 602 SSN 604 (1159)
Q Consensus 602 ~~~ 604 (1159)
.+.
T Consensus 606 ~q~ 608 (621)
T 2hiv_A 606 KQP 608 (621)
T ss_dssp HSC
T ss_pred Hhh
Confidence 544
No 3
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.8e-93 Score=864.58 Aligned_cols=528 Identities=24% Similarity=0.418 Sum_probs=457.7
Q ss_pred CcHHHHHHHHHHHHhhCChHHHHHHHHHHHhhcCCCc-hHHHHHHHh----CCCCCCCccccCCCHHHHHHHHHHHhCCC
Q 001089 7 TEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSV-DYFSALRLI----LPSLDRERGSYGLKESVLANCLIDALGMS 81 (1159)
Q Consensus 7 ~~F~~l~~lle~i~~~~~~~~K~~~l~~~l~~~~~~~-d~~p~lrLl----lP~~d~~r~~ygike~~L~k~~~~~lgl~ 81 (1159)
|+|+.||++|++|++++++++|+++|.+||.++. ++ +++++++|+ +|..+ +++|||+++.|++++++++|++
T Consensus 4 m~~~~~a~~~~~i~~t~~r~~k~~~l~~~~~~~~-~~~~~~~~~~l~~g~~~p~~~--~~~~gi~~~~l~~~~~~~~g~~ 80 (558)
T 3gde_A 4 MLFAEFAEFCERLEKISSTLELTARIAAFLQKIE-DERDLYDVVLFITGKVYPPWD--ERELGVGIGLLYEALENVSGVK 80 (558)
T ss_dssp CBHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTCC-SHHHHHHHHHHHTTCSSCTTS--SCCCCCCHHHHHHHHHHHHCCC
T ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC-chhhHHHHHHHHcCCCCcccc--cceeCcChHHHHHHHHHHHCcC
Confidence 8999999999999999999999999999999984 55 899999998 46655 4689999999999999999999
Q ss_pred cChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhccC--CCCCCCCHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHhC
Q 001089 82 KDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQG--MISGGLTIKELNDLLDRLASSEN---RAEKISVLSTLIKKT 156 (1159)
Q Consensus 82 ~~s~~~~~L~~wk~~~~~~~~GD~~~~a~~vl~~r~~--~~~~~LTi~eVn~~Ld~LA~~~~---~~~k~~il~~ll~~~ 156 (1159)
.+.... .| ...||||.+|+.++.++.. ..+++|||.+||+.|++||..++ +.+|..+|..||.+|
T Consensus 81 ~~~~~~----~~------~~~GDlg~~a~~~~~~~~~~~~~~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~l~~~~ 150 (558)
T 3gde_A 81 RSEIES----MI------REYGDLGLVAEQLIKKKKMTTLAFEELTVRKVRETFDEIASLTGEGSMKRKIMLLTGLYGLA 150 (558)
T ss_dssp HHHHHH----HH------HHHSCHHHHHHHHHHHHHHHSCCCCCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHH----HH------HhcCCHHHHHHHHHhhccCCCCCCCCCcHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHhC
Confidence 865443 34 3579999999999876542 23578999999999999998876 477889999999999
Q ss_pred CHHHHHHHHHHHHhhhccCCcccccccc----cC--cc-HHHHhhhcCCHHHHHHHHhh-hhccccccCcccCCcccccc
Q 001089 157 NAQEMKWIIMIILKDLKLGISEKSIFHE----FH--PD-AEDLFNVTCDLKLVCEKLKD-RNQRHKRQDIEVGKAVRPQL 228 (1159)
Q Consensus 157 s~~E~k~l~RiIlkdLriGi~e~til~~----~h--pd-a~~~~~~~~dL~~V~~~L~~-~~~~~~~~~i~~g~p~~PML 228 (1159)
++.|++||+|||+++||||+++++|+.+ || |+ ++++|++++||+.||+.|.+ +..++....+++|.||+|||
T Consensus 151 ~~~E~~~l~rli~~~lRiG~~~~~vl~ala~a~~~~~~~~~~~~~~~~dl~~v~~~l~~~g~~~l~~~~~~~~~p~~PmL 230 (558)
T 3gde_A 151 TPLEARYLTRLILNEMRLGVGEGIMRDAIARAFRADPETVERAYMITNDLGRVAVVAKKEGEEGLRKMKIEIHIPVRMML 230 (558)
T ss_dssp CHHHHHHHHHHHTTCCCSSCCHHHHHHHHHHHTTCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTCCCCTTSCCCCCE
T ss_pred CHHHHHHHHHHHhccccccccHHHHHHHHHHHhCCCHHHHHHHhccCCchHHHHHHHhhcCcccccccCCCCCCCCCCee
Confidence 9999999999999999999999999976 45 43 57899999999999999874 44556678899999999999
Q ss_pred ccccCChHHHHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEecCCCCcCcchhhHHHHHHHhcccCceeecceEEEEeC
Q 001089 229 AMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDT 308 (1159)
Q Consensus 229 A~~~~~~~~~~~k~~~~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~t~~~p~l~~~l~~~~~~~~~ILDGElv~~d~ 308 (1159)
|+++..+++++.++ .+|++|+||||+|||+|++|++|++|||+|+++|..+|++.+.+...+.. +||||||||+|+
T Consensus 231 A~~~~~~~~~~~~~--~~~~~E~K~DG~R~qi~~~g~~v~l~SR~g~d~t~~fPel~~~~~~~l~~-~~iLDGElv~~~- 306 (558)
T 3gde_A 231 AQVAESLESAVREM--RTAAVEWKFDGSRVQVHWDGSRVTIYSRRLENVTNALPDIVEEIKKSVKP-GVILDGEVIAVK- 306 (558)
T ss_dssp EEECSCHHHHHHHS--SSEEEEEECSSEEEEEEECSSCCEEEETTCCBCGGGCHHHHHHHHHHBCS-SEEEEEEEEEEE-
T ss_pred CCcCCChHHHhhhc--cceEEEEeEeeEEEEEEEeCCEEEEEcCCCCcccccchHHHHHHHhhCCC-CeEEEeEEEEcC-
Confidence 99998888888887 47999999999999999999999999999999999999999887655544 499999999994
Q ss_pred CCCcccccccHHHHHHHhhcCC---CCCCCeEEEEEeeeecCCccccCCCHHHHHHHHHHhhccCCCcceeeccCCCCCc
Q 001089 309 SLNRFAEFGSNQEIAKAARDGL---SSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNS 385 (1159)
Q Consensus 309 ~~~~~~pFg~lq~i~~~~r~~~---~~~~~~~~~vFDiL~lnG~~l~~~pl~eRr~~L~~~i~~~~~~~~i~~p~~~~~~ 385 (1159)
.++++||+.++...++.. .. ....+++|++|||||+|| +|++.||.+||++|++++.+ ++++.+.
T Consensus 307 -~g~~~~F~~L~~r~~~~~-~~~~~~~~~pv~~~vFDlL~l~G-~l~~~pl~eRr~~L~~~~~~-~~~i~~~-------- 374 (558)
T 3gde_A 307 -EGKPMPFQHVLRRFRRKH-DVAKMVEKIPLEAHFFDILYHDG-ECIDLPLRERRKLLESAVNE-SEKIKLA-------- 374 (558)
T ss_dssp -TTEEECHHHHHHHHHC---CTHHHHHHSCEEEEEEEEEEESS-BCTTSBHHHHHHHHHHHBCC-CSSEEEC--------
T ss_pred -CCcCCCHHHHHHHhcccc-chhhHhhcCCeEEEEEEEEeeCC-CccCCCHHHHHHHHHHhcCC-CCeEEEe--------
Confidence 367789988776543211 11 013579999999999999 99999999999999999975 4444332
Q ss_pred cccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEcccccccCCcccEEEEEEEeCCCC
Q 001089 386 HVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGR 465 (1159)
Q Consensus 386 ~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKiKpey~~~g~~lDlvVIG~~~G~Gr 465 (1159)
....+.+.+++.++|++++++|+||||+|+++|+|.||+|+.+|+|+||++ +++|+||||+++|+|+
T Consensus 375 ---------~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~~----~t~D~vViG~~~g~Gk 441 (558)
T 3gde_A 375 ---------KQIVTDSVDEVRKMYDEAISAGHEGVMIKLPSSPYIPGKRGKNWLKVKAIM----ETLDLVVVGGEWGEGK 441 (558)
T ss_dssp ---------CEEEESCHHHHHHHHHHHHHTTCCEEEEECTTCBCCTTCEEEEEEEEESSC----CCEEEEEEEEEECCTT
T ss_pred ---------eeEecCCHHHHHHHHHHHHHcCCceeEEecCCCCCCCCCcCCceEEEeccc----ceEEEEEEEEEeCCCC
Confidence 134567899999999999999999999999999999999999999999974 6899999999999999
Q ss_pred CCCccceEEEEEecCCCCCCCCceEEEEEEecCCCCHHHHHHHHHhhcccccccCCCCCCCCCcccccCCCCCCCcEEEe
Q 001089 466 RGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIE 545 (1159)
Q Consensus 466 r~g~~gsfllg~~d~~~~~~~~~~f~~v~kVgtG~sdeel~~l~~~l~~~~~~~~~~~~~pP~~~~~~~~~~~~Pdvwi~ 545 (1159)
++|.+|+|+||++++++ +.|++||+||||||++++++|.+.|++++... ..|++||+
T Consensus 442 r~g~~g~lllg~~d~~~-----g~l~~vgkvgsGftd~~~~~l~~~l~~~~~~~------------------~~~~vwv~ 498 (558)
T 3gde_A 442 RSHWLSSFELACLDPVT-----GKLLKVGRVATGFTEEDLEELTEMFRPLIVSQ------------------QGKKVEFI 498 (558)
T ss_dssp GGGSEEEEEEEEECTTT-----CCEEEEEEECSSCCHHHHHHHHHHHGGGEEEE------------------ETTEEEEC
T ss_pred ccCccceEEEEEeeCCC-----CEEEEEeeeCCCCCHHHHHHHHHHHHhhcccC------------------CCCcEEec
Confidence 99999999999998543 37999999999999999999999999887641 23689998
Q ss_pred CCcceEEEEEEeeeeeeecccccCCceeeCceeeeeecCCCccCcCCHHHHHHHHHcc
Q 001089 546 SPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSS 603 (1159)
Q Consensus 546 ~P~~s~Vlev~a~i~~i~s~~~~~g~tLRFPR~~riR~DK~~~d~~t~~el~~l~~~~ 603 (1159)
|. +|+||+++.. ..|+.|++|++||||||.|||+||+|+||+|++++.+||+.+
T Consensus 499 -P~--lV~EV~~~~~-t~s~~~~~g~~LRfPrf~r~R~DK~~~ea~t~~~l~~l~~~q 552 (558)
T 3gde_A 499 -PK--YVFEVAYQEI-QKSPKYESGYALRFPRFVRLRDDKDVDEADTIERVENLYKLQ 552 (558)
T ss_dssp -SC--CEEEEECSEE-EECSSSTTSEEEESCEEEEECTTCCGGGSCBHHHHHHHHHTT
T ss_pred -Cc--EEEEEEEeee-ecCCccCCCCEEECcEEEEEECCCChHHCCCHHHHHHHHHHh
Confidence 75 8999997543 368899999999999999999999999999999999999744
No 4
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=100.00 E-value=4.2e-93 Score=865.37 Aligned_cols=532 Identities=25% Similarity=0.445 Sum_probs=464.3
Q ss_pred CcHHHHHHHHHHHHhhCChHHHHHHHHHHHhhcCCCchHHHHHHHh----CCCCCCCccccCCCHHHHHHHHHHHhCCCc
Q 001089 7 TEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLI----LPSLDRERGSYGLKESVLANCLIDALGMSK 82 (1159)
Q Consensus 7 ~~F~~l~~lle~i~~~~~~~~K~~~l~~~l~~~~~~~d~~p~lrLl----lP~~d~~r~~ygike~~L~k~~~~~lgl~~ 82 (1159)
|+|+.||++|++|+.++++++|+++|.+||.++ .+++++|+++|+ +|..+ +++|||+++.|++++++++|+++
T Consensus 1 ~~f~~~a~~~~~l~~t~~r~~k~~~l~~~~~~~-~~~d~~~~~~ll~~~l~P~~~--~~~~gi~~~~L~~~~~~~~g~~~ 77 (561)
T 2cfm_A 1 MRYLELAQLYQKLEKTTMKLIKTRLVADFLKKV-PDDHLEFIPYLILGEVFPEWD--ERELGVGEKLLIKAVAMATGIDA 77 (561)
T ss_dssp CBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHS-CGGGTTTHHHHHTTCSSCTTC--CCCCCCCHHHHHHHHHHHHSCCH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-CchHHHHHHHHHhCCCCcccc--ccccCCCHHHHHHHHHHHHCcCH
Confidence 799999999999999999999999999999997 478899999997 56665 46899999999999999999998
Q ss_pred ChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhccCC--CCCCCCHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHhCC
Q 001089 83 DSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGM--ISGGLTIKELNDLLDRLASSEN---RAEKISVLSTLIKKTN 157 (1159)
Q Consensus 83 ~s~~~~~L~~wk~~~~~~~~GD~~~~a~~vl~~r~~~--~~~~LTi~eVn~~Ld~LA~~~~---~~~k~~il~~ll~~~s 157 (1159)
+.... .| ...||||++|+.+++.++.. ..++|||.+||+.|++||..++ +++|..+|..||.+|+
T Consensus 78 ~~~~~----~~------~~~GDlg~~~~~~~~~~~~~~~~~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~ll~~~~ 147 (561)
T 2cfm_A 78 KEIEE----SV------KDTGDLGESIALAVKKKKQKSFFSQPLTIKRVYQTLVKVAETTGEGSQDKKVKYLADLFMDAE 147 (561)
T ss_dssp HHHHH----HH------HHHSCHHHHHHHHHHHHTTTCCCCCCCBHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHH----HH------HhcCCHHHHHHHHhccCcCcCcCCCCCcHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC
Confidence 65432 23 34799999999999877532 2478999999999999999876 4678899999999999
Q ss_pred HHHHHHHHHHHHhhhccCCccccccccc-------CccHHHHhhhcCCHHHHHHHHhhhh-ccccccCcccCCccccccc
Q 001089 158 AQEMKWIIMIILKDLKLGISEKSIFHEF-------HPDAEDLFNVTCDLKLVCEKLKDRN-QRHKRQDIEVGKAVRPQLA 229 (1159)
Q Consensus 158 ~~E~k~l~RiIlkdLriGi~e~til~~~-------hpda~~~~~~~~dL~~V~~~L~~~~-~~~~~~~i~~g~p~~PMLA 229 (1159)
+.|++||+|||+++||||+++++|+.++ |++++++|++++||+.||+.|+++. ..+....+.+|+|++||||
T Consensus 148 ~~e~~~l~rli~~~lriG~~~~~vl~ala~a~~~~~~~v~~~~~~~~~l~~v~~~l~~~g~~~l~~~~~~~~~P~~PmLA 227 (561)
T 2cfm_A 148 PLEAKYLARTILGTMRTGVAEGLLRDAIAMAFHVKVELVERAYMLTSDFGYVAKIAKLEGNEGLAKVQVQLGKPIKPMLA 227 (561)
T ss_dssp HHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCTTSCCCCCEE
T ss_pred HHHHHHHHHHHhccccccccHHHHHHHHHHHhcCCHHHHHHHHccCCCHHHHHHHHHhcccccccccCCCCCCCCCCeeC
Confidence 9999999999999999999999999854 3568899999999999999988643 3455778999999999999
Q ss_pred cccCChHHHHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEecCCCCcCcchhhHHHHHHHhcccCceeecceEEEEeCC
Q 001089 230 MRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTS 309 (1159)
Q Consensus 230 ~~~~~~~~~~~k~~~~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~t~~~p~l~~~l~~~~~~~~~ILDGElv~~d~~ 309 (1159)
+++..++++++++++ +|++|+||||+|||+|+.++.+++|||+|+++|..+|++.+.+...+...++|||||||+|| .
T Consensus 228 ~~~~~~~~~~~~~~~-~~~~E~K~DG~R~~i~~~~g~v~l~SR~g~~~t~~fPel~~~~~~~l~~~~~iLDGElv~~d-~ 305 (561)
T 2cfm_A 228 QQAASIRDALLEMGG-EAEFEIKYDGARVQVHKDGSKIIVYSRRLENVTRAIPEIVEALKEAIIPEKAIVEGELVAIG-E 305 (561)
T ss_dssp EEESCHHHHHHHTTS-CEEEEEECCSEEEEEEEETTEEEEECTTCCBCGGGCHHHHHHHHHHBCSSEEEEEEEEEEBC-T
T ss_pred CcCCChhHHHhhcCC-cEEEEEeEceEEEEEEEECCEEEEEeCCCCCchhhhhhHHHHHHHhCCCcceEeeeEEEEEc-C
Confidence 999888888888753 79999999999999999999999999999999999999998876566668999999999999 5
Q ss_pred CCcccccccHHHHHHHhhcCC---CCCCCeEEEEEeeeecCCccccCCCHHHHHHHHHHhhccCCCcceeeccCCCCCcc
Q 001089 310 LNRFAEFGSNQEIAKAARDGL---SSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSH 386 (1159)
Q Consensus 310 ~~~~~pFg~lq~i~~~~r~~~---~~~~~~~~~vFDiL~lnG~~l~~~pl~eRr~~L~~~i~~~~~~~~i~~p~~~~~~~ 386 (1159)
+++++||+.++...++.. .. ....+++|++|||||+||++|++.||.+||++|++++.+. +++.+.
T Consensus 306 ~g~~~~F~~L~~r~~~~~-~~~~~~~~~~~~~~vFDlL~l~g~~l~~~pl~eRr~~L~~~~~~~-~~i~~~--------- 374 (561)
T 2cfm_A 306 NGRPLPFQYVLRRFRRKH-NIEEMMEKIPLELNLFDVLYVDGQSLIDTKFIDRRRTLEEIIKQN-EKIKVA--------- 374 (561)
T ss_dssp TSSBCCTHHHHHHHHCCS-CHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC-SSEEEC---------
T ss_pred CCcccCHHHHHHHhhccc-chhhhcccCceEEEEEEEEeECCcCcccCCHHHHHHHHHHHhCcC-CcEEEe---------
Confidence 677889988876644211 10 0135799999999999999999999999999999999764 344321
Q ss_pred ccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEcccccccCCcccEEEEEEEeCCCCC
Q 001089 387 VRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRR 466 (1159)
Q Consensus 387 v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKiKpey~~~g~~lDlvVIG~~~G~Grr 466 (1159)
..+.+.+.++++++|++++++|+||||+|+++|+|.||+|+++|+|+|++| +++|++|||+++|+|++
T Consensus 375 --------~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~~----dt~D~vViG~~~g~Gkr 442 (561)
T 2cfm_A 375 --------ENLITKKVEEAEAFYKRALEMGHEGLMAKRLDAVYEPGNRGKKWLKIKPTM----ENLDLVIIGAEWGEGRR 442 (561)
T ss_dssp --------CEEEESCHHHHHHHHHHHHHTTCCEEEEECTTCCCCTTCEEEEEEEECSSC----CCEEEEEEEEEECSGGG
T ss_pred --------eeEEcCCHHHHHHHHHHHHHcCCceeEEeCCCCCCCCCCcCCCeEEEcccC----cceeEEEEEEEeCCCCC
Confidence 134577899999999999999999999999999999999999999999998 68999999999999999
Q ss_pred CCccceEEEEEecCCCCCCCCceEEEEEEecCCCCHHHHHHHHHhhcccccccCCCCCCCCCcccccCCCCCCCcEEEeC
Q 001089 467 GGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIES 546 (1159)
Q Consensus 467 ~g~~gsfllg~~d~~~~~~~~~~f~~v~kVgtG~sdeel~~l~~~l~~~~~~~~~~~~~pP~~~~~~~~~~~~Pdvwi~~ 546 (1159)
+|.+|+|+|||+++++ +.|++||+||||||++++++|.+.+++++.. ...|++||+
T Consensus 443 ~g~~g~lllg~~d~~~-----~~~~~vgkvgsGftd~~~~~l~~~l~~~~~~------------------~~~~~~wv~- 498 (561)
T 2cfm_A 443 AHLFGSFILGAYDPET-----GEFLEVGKVGSGFTDDDLVEFTKMLKPLIIK------------------EEGKRVWLQ- 498 (561)
T ss_dssp TTSEEEEEEEEECTTT-----CCEEEEEEECSSCCHHHHHHHHHHHGGGEEE------------------EETTEEEEC-
T ss_pred CCccceEEEEEEeCCC-----CeEEEEeEeCCCCCHHHHHHHHHHHhhhccc------------------cCCCeEEeC-
Confidence 9999999999998653 3799999999999999999999999987753 135799998
Q ss_pred CcceEEEEEEeeeeeeecccccCCceeeCceeeeeecCCCccCcCCHHHHHHHHHcc
Q 001089 547 PEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSS 603 (1159)
Q Consensus 547 P~~s~Vlev~a~i~~i~s~~~~~g~tLRFPR~~riR~DK~~~d~~t~~el~~l~~~~ 603 (1159)
|. +|+||+++.. ..|+.|++|++||||||.|||+||+|+||+|++++.+|++.+
T Consensus 499 P~--~V~EV~~~~~-t~s~~~~~G~~lRfPrf~r~R~DK~~~ea~t~~~l~~l~~~q 552 (561)
T 2cfm_A 499 PK--VVIEVTYQEI-QKSPKYRSGFALRFPRFVALRDDKGPEDADTIERIAQLYELQ 552 (561)
T ss_dssp SC--CEEEEECSEE-ECCSSSTTSCEEESCEEEEECTTSCGGGSCBHHHHHHHHHHH
T ss_pred Cc--eEEEEEEEEE-EcCCccCCCCEEEccEEEEEeCCCChHHCCCHHHHHHHHHHh
Confidence 75 8999997543 367889999999999999999999999999999999999743
No 5
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=100.00 E-value=4e-93 Score=878.88 Aligned_cols=554 Identities=25% Similarity=0.433 Sum_probs=467.4
Q ss_pred CCCCcHHHHHHHHHHHHhhCChHHHHHHHHHHHhhc--CCCchHHHHHHHhCCCC--CCCccccCCCHHHHHHHHHHHhC
Q 001089 4 TEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTY--CDSVDYFSALRLILPSL--DRERGSYGLKESVLANCLIDALG 79 (1159)
Q Consensus 4 ~~~~~F~~l~~lle~i~~~~~~~~K~~~l~~~l~~~--~~~~d~~p~lrLllP~~--d~~r~~ygike~~L~k~~~~~lg 79 (1159)
..+|+|+.||++|++|++++++++|+++|.+||..+ ..++++.++++|+++.+ ++++.+|||+++.|++++++++|
T Consensus 53 ~~~~~~~~la~~~~~i~~t~~r~~k~~~l~~~~~~~~~~~~~dl~~~v~ll~g~l~P~~~~~elgi~~~~L~k~i~~~~g 132 (688)
T 1x9n_A 53 GQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATG 132 (688)
T ss_dssp TSCCBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTCSSCGGGCCCCCCCHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcCChHHHHHHHHHHcCCCCccccccccCcChHHHHHHHHHHHC
Confidence 357999999999999999999999999999999985 35789999999997765 45567999999999999999999
Q ss_pred CCcChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhccCC-CCCCCCHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHh
Q 001089 80 MSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGM-ISGGLTIKELNDLLDRLASSEN---RAEKISVLSTLIKK 155 (1159)
Q Consensus 80 l~~~s~~~~~L~~wk~~~~~~~~GD~~~~a~~vl~~r~~~-~~~~LTi~eVn~~Ld~LA~~~~---~~~k~~il~~ll~~ 155 (1159)
++.+.... .| ...||||++|+++++++... .+.+|||.+|++.|++||..+| +..|..+|..||.+
T Consensus 133 ~~~~~~~~----~~------~~~GDlg~va~~~~~~~~~~~~~~~lTv~~V~~~L~~ia~~~g~~s~~~k~~~l~~ll~~ 202 (688)
T 1x9n_A 133 RQLESVRA----EA------AEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVA 202 (688)
T ss_dssp CCHHHHHH----HH------HHHTCHHHHTCC--------CCCSCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHH
T ss_pred cCHHHHHH----HH------HhcCCHHHHHHHHHhcccccCCCCCCcHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHh
Confidence 99865443 34 34799999999887654332 3578999999999999999876 45688999999999
Q ss_pred CCHHHHHHHHHHHHhhhccCCccccccccc------Ccc------------------------------HHHHhhhcCCH
Q 001089 156 TNAQEMKWIIMIILKDLKLGISEKSIFHEF------HPD------------------------------AEDLFNVTCDL 199 (1159)
Q Consensus 156 ~s~~E~k~l~RiIlkdLriGi~e~til~~~------hpd------------------------------a~~~~~~~~dL 199 (1159)
|++.|++||+|+|+++||||+++++|+.++ ||. +.++|+.++|+
T Consensus 203 ~~~~E~k~l~Rli~~~lRiG~~~~~vl~ala~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~ 282 (688)
T 1x9n_A 203 CRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDL 282 (688)
T ss_dssp CCSTHHHHHHHHHTTCCCCSCCHHHHHHHHHHHHHHSCTTCCSSCSCSCTTTTSCHHHHHHHHHHHHHHHHHHHHHSCCH
T ss_pred CCHHHHHHHHHHHhcccccCccHHHHHHHHHHHhccCccccccchhhhhhhcccchhhHHHHHHHHHHHHHHHHhhCCCH
Confidence 999999999999999999999999999754 441 13578999999
Q ss_pred HHHHHHHhhh-hccc-cccCcccCCccccccccccCChHHHHHhcCCCcEEEEEecceEEEEEEEe-CCEEEEEecCCCC
Q 001089 200 KLVCEKLKDR-NQRH-KRQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKN-GSEIHYFSRSFLD 276 (1159)
Q Consensus 200 ~~V~~~L~~~-~~~~-~~~~i~~g~p~~PMLA~~~~~~~~~~~k~~~~~~~vE~K~DGeR~qih~~-g~~v~~fSR~g~d 276 (1159)
+.||..|... ...+ ....+++|.||+||||+++..+.++++++.+..|++|+||||+|||+|++ ++.+++|||+|++
T Consensus 283 ~~l~~~l~~~g~~~l~~~~~~~~g~pv~PMLA~~~~~~~~~l~~~~~~~~~~E~K~DG~R~qih~~~~g~v~l~SR~g~d 362 (688)
T 1x9n_A 283 DRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQED 362 (688)
T ss_dssp HHHHHHHHHHHHHHTGGGCCCCTTSCCCCCEEEEESSHHHHHHHTTTSCEEEEEEESSEEEEEEECTTSCEEEECTTSCB
T ss_pred HHHHHHHHhcchhhcccccCcCCCCCccCccCCccCCHHHHHhhcCCCeEEEEEccccEeEEEEEcCCCeEEEEeCCCCc
Confidence 9999987643 2233 35679999999999999999888889999888899999999999999995 5689999999999
Q ss_pred cCcchhhHHHHHHHhc--ccCceeecceEEEEeCCCCcccccccHHHHHHHhhcCCC---CCCCeEEEEEeeeecCCccc
Q 001089 277 HSEYGHAMSKIIEQNV--LVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLS---SDRQLCYFAFDVLYVGDTSV 351 (1159)
Q Consensus 277 ~t~~~p~l~~~l~~~~--~~~~~ILDGElv~~d~~~~~~~pFg~lq~i~~~~r~~~~---~~~~~~~~vFDiL~lnG~~l 351 (1159)
+|..+|++.+.+...+ ...+||||||||+||+.+++++||+.++. +.+.... ...+++|++|||||+||++|
T Consensus 363 ~t~~fPel~~~l~~~~~~~~~~~ILDGElV~~d~~~g~~~~F~~L~~---r~r~~~~~~~~~~~v~~~vFDlL~l~G~~l 439 (688)
T 1x9n_A 363 NTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTT---RKRKEVDASEIQVQVCLYAFDLIYLNGESL 439 (688)
T ss_dssp CTTTCHHHHHTSGGGBCTTCCCEEEEEEEEEECTTTCSBCCHHHHTT---SCSSCCCGGGCCSEEEEEEEEEEEETTEEC
T ss_pred ccccchHHHHHHHHhhccCCCCeEEeEEEEEEeCCCCCcCCHHHHHH---HhhcccchhhcccceEEEEEechhhcCCcc
Confidence 9999999887654433 25699999999999987788999976654 2232221 23579999999999999999
Q ss_pred cCCCHHHHHHHHHHhhccCCCcceeeccCCCCCccccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecC--CCCC
Q 001089 352 IHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDL--GSKW 429 (1159)
Q Consensus 352 ~~~pl~eRr~~L~~~i~~~~~~~~i~~p~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~--ds~Y 429 (1159)
++.||.+||++|++++.+.++++.+. ....+.+.+++.++|++++++|+||||+|++ +|+|
T Consensus 440 ~~~Pl~eRr~~L~~~~~~~~~~i~~~-----------------~~~~~~~~~~~~~~~~~a~~~g~EGlV~K~~~~ds~Y 502 (688)
T 1x9n_A 440 VREPLSRRRQLLRENFVETEGEFVFA-----------------TSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATY 502 (688)
T ss_dssp TTSCHHHHHHHHHHHBCCBTTTEEEC-----------------CEECCCCHHHHHHHHHHHHHTSEEEEEEEESSSSCSS
T ss_pred ccCCHHHHHHHHHHhhccCCCcEEEE-----------------eeEecCCHHHHHHHHHHHHhcCCceeEEeecccCCCC
Confidence 99999999999999998776665432 1344678999999999999999999999999 9999
Q ss_pred cCCCCCCCeEEEccccccc-CCcccEEEEEEEeCCCCCCCccceEEEEEecCCCCCCCCceEEEEEEecCCCCHHHHHHH
Q 001089 430 EPGDRSGKWLKLKPEYIRA-GSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAV 508 (1159)
Q Consensus 430 ~pGkRs~~WlKiKpey~~~-g~~lDlvVIG~~~G~Grr~g~~gsfllg~~d~~~~~~~~~~f~~v~kVgtG~sdeel~~l 508 (1159)
.||+|+.+|+|+|++|+++ ++++|+||||||+|+|+|+|.+|+|+|||+++++ +.|++||+||||||++++++|
T Consensus 503 ~~GkRs~~WlK~K~~y~~~~~dt~D~vVIG~~~g~Gkr~g~~gslllg~~d~~~-----~~l~~vgkvgtGftd~~~~~l 577 (688)
T 1x9n_A 503 EIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDS-----EELQAICKLGTGFSDEELEEH 577 (688)
T ss_dssp CTTTCSEEEEEEEHHHHHSSCEEEEEEEEEEEEBCTTSBTSEEEEEEEEEETTT-----TEEEEEEEECCSCCHHHHHHH
T ss_pred CCCCcCchHheeehhhhccccccccEEEEEEEeCCCCCCCceeeEEEEEEeCCC-----CeEEEEeeeCCCCCHHHHHHH
Confidence 9999999999999999884 6899999999999999999999999999998753 389999999999999999999
Q ss_pred HHhhcccccccCCCCCCCCCcccccCCCCCCCcEEEeCCcceEEEEEEeeeeeeecccccC---------CceeeCceee
Q 001089 509 VTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSA---------PYSLRFPRID 579 (1159)
Q Consensus 509 ~~~l~~~~~~~~~~~~~pP~~~~~~~~~~~~Pdvwi~~P~~s~Vlev~a~i~~i~s~~~~~---------g~tLRFPR~~ 579 (1159)
.+.|+++++. .||.++.+. ....|++||+ |. +|+||++... ..|+.|++ |++||||||.
T Consensus 578 ~~~l~~~~~~------~~~~~~~~~--~~~~p~vwv~-P~--~V~EV~~~e~-t~S~~~~~~~g~~~~~~G~sLRfPrf~ 645 (688)
T 1x9n_A 578 HQSLKALVLP------SPRPYVRID--GAVIPDHWLD-PS--AVWEVKCADL-SLSPIYPAARGLVDSDKGISLRFPRFI 645 (688)
T ss_dssp HHHHHHTEES------SCCTTEECS--SSCCCSEEEC-SC--CEEEEEESEE-EEESSCCTTTTTSCSSCEEEEESCEEE
T ss_pred HHHhhccccC------CCCCccccC--CCCCCcEEeC-Cc--EEEEEEEEee-eccccccccccccccCCCceEECcEEE
Confidence 9999998864 133444443 3578999998 75 7999997443 35788876 8999999999
Q ss_pred eeecCCCccCcCCHHHHHHHHHccC
Q 001089 580 RVRYDKPWHDCLDVQSFVELVHSSN 604 (1159)
Q Consensus 580 riR~DK~~~d~~t~~el~~l~~~~~ 604 (1159)
|||+||+|+||+|+++|.+|++++.
T Consensus 646 riR~DK~~~ea~t~~~l~~l~~~q~ 670 (688)
T 1x9n_A 646 RVREDKQPEQATTSAQVACLYRKQS 670 (688)
T ss_dssp EECTTCCGGGSCBHHHHHHHHHHHC
T ss_pred EEeCCCChHHCCCHHHHHHHHHHhH
Confidence 9999999999999999999997654
No 6
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4.1e-59 Score=529.15 Aligned_cols=307 Identities=23% Similarity=0.343 Sum_probs=245.8
Q ss_pred cccCCccccccccccCChHHHHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEecCCCCcCcchhhHHHHHHHhcccCce
Q 001089 218 IEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRC 297 (1159)
Q Consensus 218 i~~g~p~~PMLA~~~~~~~~~~~k~~~~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~t~~~p~l~~~l~~~~~~~~~ 297 (1159)
.++|.|++||||++.... . +.+.+|++|+||||+|||+|+.++++++|||+|+++|..+|++...+ ..+...++
T Consensus 3 ~~~~~p~~PmLA~~~~~~-~----~~~~~~~~E~K~DG~R~~~~~~~g~v~l~SR~g~~~t~~fPel~~~~-~~l~~~~~ 76 (310)
T 1vs0_A 3 VFEFDNLAPMLATHGTVA-G----LKASQWAFEGXWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALA-EDLADHHV 76 (310)
T ss_dssp -CCGGGCCCCEEEECCCT-T----CCTTTEEEEEECCSEEEEEEEETTEEEEEETTCCBCGGGCGGGHHHH-HHTTTCEE
T ss_pred CCCCCCccCeECCCcCCC-c----cCCCCEEEEEccCcEEEEEEEECCEEEEEcCCCCCchhhchhHHHHH-HhCCCccE
Confidence 468999999999998522 1 24568999999999999999999999999999999999999988764 44555689
Q ss_pred eecceEEEEeCCCCcccccccHHHHHHHhhcCCCCCCCeEEEEEeeeecCCccccCCCHHHHHHHHHHhhccCCCcceee
Q 001089 298 ILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETL 377 (1159)
Q Consensus 298 ILDGElv~~d~~~~~~~pFg~lq~i~~~~r~~~~~~~~~~~~vFDiL~lnG~~l~~~pl~eRr~~L~~~i~~~~~~~~i~ 377 (1159)
|||||||+||.. ++ .+|+.+|. +.+. .+++|++||||++||++|+++||.+|+++|++++.+. ++.+.
T Consensus 77 iLDGElv~~d~~-g~-~~F~~l~~---r~~~-----~~~~~~vFDll~~~g~~l~~~pl~eRr~~L~~~~~~~--~i~~~ 144 (310)
T 1vs0_A 77 VLDGEAVVLDSS-GV-PSFSQMQN---RGRD-----TRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANAT--SLTVP 144 (310)
T ss_dssp EEEEEEECBCTT-SC-BCHHHHHT---CCTT-----SCCEEEEEEEEEETTEECTTSCHHHHHHHHHHHHHHS--CCCCC
T ss_pred EEeeEEEEECCC-CC-cCHHHHHh---hccC-----CcEEEEEEEeEEECCcCcccCCHHHHHHHHHHhccCC--cEEEC
Confidence 999999999874 44 48976653 2221 2599999999999999999999999999999998643 32211
Q ss_pred ccCCCCCccccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEcccccccCCcccEEEE
Q 001089 378 VPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLII 457 (1159)
Q Consensus 378 ~p~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKiKpey~~~g~~lDlvVI 457 (1159)
+ ... .++.++|++++++|+||||+|+++|+|.+|+|+.+|+|+|++| ++|++|+
T Consensus 145 -~----------------~~~----~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~~-----~~D~vv~ 198 (310)
T 1vs0_A 145 -E----------------LLP----GDGAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWN-----TQEVVIG 198 (310)
T ss_dssp -C----------------CCC----SSHHHHHHHHHHTTCCEEEEEETTCCCCTTCEEEEEEEEESSE-----EEEEEEE
T ss_pred -c----------------cCc----hHHHHHHHHHHHcCCceEEEeCCCCCcCCCCcChHHhccchhe-----EEEEEEE
Confidence 0 111 2489999999999999999999999999999999999999997 8999999
Q ss_pred EEEeCCCCCCCccceEEEEEecCCCCCCCCceEEEEEEecCCCCHHHHHHHHHhhcccccccCCCCCCCCCcccccCCCC
Q 001089 458 GGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSK 537 (1159)
Q Consensus 458 G~~~G~Grr~g~~gsfllg~~d~~~~~~~~~~f~~v~kVgtG~sdeel~~l~~~l~~~~~~~~~~~~~pP~~~~~~~~~~ 537 (1159)
|+++|+|+++|.+|+|+||+++++ .|+++|+||||||++++++|.+.|++++.. +|.|....+...
T Consensus 199 G~~~g~G~r~g~~g~lllg~~d~~-------g~~~vgkvgtGftd~~~~~l~~~l~~~~~~-------~~p~~~~~~~~~ 264 (310)
T 1vs0_A 199 GWRAGEGGRSSGVGSLLMGIPGPG-------GLQFAGRVGTGLSERELANLKEMLAPLHTD-------ESPFDVPLPARD 264 (310)
T ss_dssp EEEC--------CCEEEEEEEETT-------EEEEEEEECSSCCHHHHHHHHHHHGGGBCS-------SCSBSSCCCHHH
T ss_pred EEEcCCCCccCccceEEEEEEcCC-------CCEEEEEECCCCCHHHHHHHHHHHHhhccC-------CCCccccCCccc
Confidence 999999999999999999999753 489999999999999999999999998763 222321111134
Q ss_pred CCCcEEEeCCcceEEEEEEeeeeeeecccccCCceeeCceeeeeecCCCccCcCC
Q 001089 538 ERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLD 592 (1159)
Q Consensus 538 ~~Pdvwi~~P~~s~Vlev~a~i~~i~s~~~~~g~tLRFPR~~riR~DK~~~d~~t 592 (1159)
.+|++||+ |+ +|+||+++. ++.+++||||||++||+||+|+||+.
T Consensus 265 ~~~~~wv~-P~--~V~ev~~~~-------~t~~g~lRfP~f~r~R~DK~~~~~~~ 309 (310)
T 1vs0_A 265 AKGITYVK-PA--LVAEVRYSE-------WTPEGRLRQSSWRGLRPDKKPSEVVR 309 (310)
T ss_dssp HTTEEEBC-TT--CEEEEEESC-------BCTTSCBTTCEEEEECTTSCGGGCCC
T ss_pred CCCCEEEc-CC--EEEEEEEEE-------EcCCCeEEceEEEEEeCCCCHHHhCC
Confidence 67899998 76 799998643 34578999999999999999999973
No 7
>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1
Probab=100.00 E-value=8e-50 Score=460.83 Aligned_cols=304 Identities=20% Similarity=0.251 Sum_probs=238.4
Q ss_pred cCcccCCccccccccccCChHHHHHhcCCCcEEEEEecceEEEEEEEe-CCEEEEEecCCCCcCc------chhhHHHHH
Q 001089 216 QDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKN-GSEIHYFSRSFLDHSE------YGHAMSKII 288 (1159)
Q Consensus 216 ~~i~~g~p~~PMLA~~~~~~~~~~~k~~~~~~~vE~K~DGeR~qih~~-g~~v~~fSR~g~d~t~------~~p~l~~~l 288 (1159)
..+++|+||+|||+. +.+++... ..|++|+||||+|||+|+. ++++++|||+|++++. ++|++.+.+
T Consensus 3 ~~~~~~~pv~pmL~~----~~~~l~~~--~~~~~E~K~DG~R~~~~~~~~g~v~l~SR~g~~~~~l~~~~~~~p~~~~~l 76 (348)
T 1a0i_A 3 IKTNPFKAVSFVESA----IKKALDNA--GYLIAEIKYDGVRGNICVDNTANSYWLSRVSKTIPALEHLNGFDVRWKRLL 76 (348)
T ss_dssp TCCCCEEEEECCHHH----HHHHHHHH--SSEEEEECCCSEEEEEEEETTSEEEEECTTSCBCGGGGGGCEECHHHHHHH
T ss_pred eeccCCCcCchhhhc----HHHHHhhc--CcEEEEEeeceeEEEEEEeCCCeEEEEcCCCCCCcchhhhhcccchHHHHH
Confidence 468899999999943 34455544 4799999999999999997 6899999999999886 678888877
Q ss_pred HHh--cccCceeecceEEEEeCCCCcccccccHHHHHHHh------------------hcC-----CCCCCCeEEEEEee
Q 001089 289 EQN--VLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAA------------------RDG-----LSSDRQLCYFAFDV 343 (1159)
Q Consensus 289 ~~~--~~~~~~ILDGElv~~d~~~~~~~pFg~lq~i~~~~------------------r~~-----~~~~~~~~~~vFDi 343 (1159)
... ..+.+||||||||+|+ .||+.+|...++. +.. .....+++|++|||
T Consensus 77 ~~~~~~~~~~~iLDGElv~~~------~~F~~l~~~~~~k~~~~k~v~~~~~~~r~~~~~~~~i~~~~~~~~~~~~vFDl 150 (348)
T 1a0i_A 77 NDDRCFYKDGFMLDGELMVKG------VDFNTGSGLLRTKWTDTKNQEFHEELFVEPIRKKDKVPFKLHTGHLHIKLYAI 150 (348)
T ss_dssp HSTTCCCTTEEEEEEEEEESS------SCTTTHHHHHHCCSCCSSBSSCC--------CCCSCCCCCBCTTTEEEEEEEE
T ss_pred hhhhccCCCCEEEEEEEEEeC------CCHHHHHHHhcccccccccccccccccccccccccccccccccCcEEEEEEee
Confidence 542 3456999999999974 4999888766521 100 01245799999999
Q ss_pred eecC----Cccc---cCCCHHHHHHHHHHhhccCCC-cceeeccCCCCCccccCCCCCccceecCCHHHHHHHHHHHHHc
Q 001089 344 LYVG----DTSV---IHQSLKERHELLQKVVKPSKG-RLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIEN 415 (1159)
Q Consensus 344 L~ln----G~~l---~~~pl~eRr~~L~~~i~~~~~-~~~i~~p~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~ 415 (1159)
||+| |++| +++||.+|+++|++++...++ ++.+. ..+.+.+.+++.++|++++++
T Consensus 151 l~l~~~~~G~~l~~~~~~pl~eRr~~L~~l~~~~~~~~i~~~-----------------~~~~~~~~~~~~~~~~~~~~~ 213 (348)
T 1a0i_A 151 LPLHIVESGEDCDVMTLLMQEHVKNMLPLLQEYFPEIEWQAA-----------------ESYEVYDMVELQQLYEQKRAE 213 (348)
T ss_dssp EEHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCTTSEEEEC-----------------CEEEESSHHHHHHHHHHHHTT
T ss_pred EeeCCCCCCccchhhccCCHHHHHHHHHHHhhhCCCCeEEEe-----------------ccEecCCHHHHHHHHHHHHHc
Confidence 9999 9998 899999999999999875432 22221 134567899999999999999
Q ss_pred CCceEEEecCCCCCcCCCCCCCeEEEcccccccCCcccEEEEEEEeCCCCC--CCccceEEEEEecCCCCCCCCceEEEE
Q 001089 416 RDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRR--GGEVAQFLVALAERPAPDTYPRRFISF 493 (1159)
Q Consensus 416 g~EGlVlK~~ds~Y~pGkRs~~WlKiKpey~~~g~~lDlvVIG~~~G~Grr--~g~~gsfllg~~d~~~~~~~~~~f~~v 493 (1159)
|+||||+|+++|+|++|+|++ |+|+|++| ++|++|||+++|+|++ +|.+|+|+|+. + + +.|.
T Consensus 214 g~EGlv~K~~ds~Y~~Grr~~-wlK~K~~~-----~~D~vViG~~~g~g~r~~~g~~~~~~~~~-~-~------g~~~-- 277 (348)
T 1a0i_A 214 GHEGLIVKDPMCIYKRGKKSG-WWKMKPEN-----EADGIIQGLVWGTKGLANEGKVIGFEVLL-E-S------GRLV-- 277 (348)
T ss_dssp TCCCEEEECTTCEECSEEEEE-EEEESCCE-----EEEEEEEEEECCCTTTSSCSSCCEEEEEC-T-T------SCEE--
T ss_pred CCceEEEeCCCCCCCCCCccC-cEEEeecc-----cEEEEEEEEEeCCCCccCCceEEEEEEEe-C-C------CCEE--
Confidence 999999999999999998875 99999998 8999999999999986 89999999852 2 2 2564
Q ss_pred EEecCCCCHHHHHHHHHhhcccccccCCCCCCCCCcccccCCCCCCCcEEEeCCcceEEEEEEeeeeeeecccccCCcee
Q 001089 494 CRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSL 573 (1159)
Q Consensus 494 ~kVgtG~sdeel~~l~~~l~~~~~~~~~~~~~pP~~~~~~~~~~~~Pdvwi~~P~~s~Vlev~a~i~~i~s~~~~~g~tL 573 (1159)
+|||||++++++|.+.+++++... ..+| + .. ....+|++|++ |..+.|+||++...+ ..| +|
T Consensus 278 --~gtGftd~~~~~l~~~l~~~~~~~----~~~~-~-~~--~~~~~~~~wv~-P~~g~v~eV~~~~~t------~~G-~l 339 (348)
T 1a0i_A 278 --NATNISRALMDEFTETVKEATLSQ----WGFF-S-PY--GIGDNDACTIN-PYDGWACQISYMEET------PDG-SL 339 (348)
T ss_dssp --EEBCCCSHHHHHHHHHHHHHHTTT----SCCC------------CCCCCC-TTTTCEEEEEESEEC------TTS-CE
T ss_pred --EccCCCHHHHHHHHHHHhhhcccc----CCCc-c-cc--cCCCCCcEEEc-CCCcEEEEEEeeeec------CCC-ce
Confidence 369999999999999999887531 1123 2 11 12467899998 888999999874321 135 99
Q ss_pred eCceeeeee
Q 001089 574 RFPRIDRVR 582 (1159)
Q Consensus 574 RFPR~~riR 582 (1159)
|||||+++|
T Consensus 340 RfP~f~~~R 348 (348)
T 1a0i_A 340 RHPSFVMFR 348 (348)
T ss_dssp ESCEEEEEC
T ss_pred ECCeEeEeC
Confidence 999999998
No 8
>1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A*
Probab=100.00 E-value=5.1e-45 Score=411.03 Aligned_cols=265 Identities=17% Similarity=0.235 Sum_probs=201.4
Q ss_pred ccccccccccCChHHHHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEecCCCCcCcchhhHHHHHHHhcccCceeecce
Q 001089 223 AVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGE 302 (1159)
Q Consensus 223 p~~PMLA~~~~~~~~~~~k~~~~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~t~~~p~l~~~l~~~~~~~~~ILDGE 302 (1159)
+|+||||+++..+.+ .+.+|++|+||||+|||+ +| ++|||+|+++|. |.+.+.+...+ ++|||||
T Consensus 2 ~~~PmLA~~~~~~~~-----~~~~~~~E~K~DG~R~~~--~g---~l~SR~g~~~t~--p~l~~~~~~~~---~~iLDGE 66 (297)
T 1fvi_A 2 ITKPLLAATLENIED-----VQFPCLATPKIAGIRSVK--QT---QMLSRTFKPIRN--SVMNRLLTELL---PEGSDGE 66 (297)
T ss_dssp CSSCCBCEECCCGGG-----CCSSEEEEECCCSEEEEE--SS---SEECTTSCBCSC--HHHHHHHHHHS---CTTEEEE
T ss_pred CcCceeCCccCcCcC-----CCCcEEEEeeEeeeeEEe--cC---EEECCCCcccCc--HHHHHHHHhcC---CeeEEEE
Confidence 689999999876521 146799999999999998 43 999999999996 88777765443 8999999
Q ss_pred EEEEeCCCCcccccccHHHHHHHhhcCCCCCCCeEEEEEeeeecCCccccCCCHHHHHHHHHHhhccCCC-----cceee
Q 001089 303 MLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKG-----RLETL 377 (1159)
Q Consensus 303 lv~~d~~~~~~~pFg~lq~i~~~~r~~~~~~~~~~~~vFDiL~lnG~~l~~~pl~eRr~~L~~~i~~~~~-----~~~i~ 377 (1159)
+|++. .+|+.+|...++.. .....+++|+||||||+| ++.||.+|+++|++++.+.+. ++.++
T Consensus 67 lv~~~------~~F~~l~~~~~~~~--~~~~~~~~~~vFDll~l~----~~~pl~eRr~~L~~~~~~~~~~~~~~~i~~~ 134 (297)
T 1fvi_A 67 ISIEG------ATFQDTTSAVMTGH--KMYNAKFSYYWFDYVTDD----PLKKYIDRVEDMKNYITVHPHILEHAQVKII 134 (297)
T ss_dssp EECTT------SCHHHHHHHHHSCC------CCEEEEEEEECSSC----TTSCHHHHHHHHHHHHHHCGGGGGCSSEEEE
T ss_pred EEECC------CCHHHHHHHhccCC--CCCccceEEEEEeccCCC----CCCCHHHHHHHHHHHHhhcCCccccceEEEc
Confidence 99932 36877766544321 113468999999999998 789999999999999875432 33322
Q ss_pred ccCCCCCccccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCC----CeEEEcccccccCCccc
Q 001089 378 VPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSG----KWLKLKPEYIRAGSDLD 453 (1159)
Q Consensus 378 ~p~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~----~WlKiKpey~~~g~~lD 453 (1159)
| ...+.+.+.+++.++|++++++|+||||+|+++|+|++| |+. +|+|+|+++ ++|
T Consensus 135 -~--------------~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G-Rs~~~~g~wlK~K~~~-----~~d 193 (297)
T 1fvi_A 135 -P--------------LIPVEINNITELLQYERDVLSKGFEGVMIRKPDGKYKFG-RSTLKEGILLKMKQFK-----DAE 193 (297)
T ss_dssp -E--------------CCCEEECSHHHHHHHHHHHHHTTCCSEEEECTTCCCCSS-BCCTTTTSSEEECCCE-----EEE
T ss_pred -C--------------cceEecCCHHHHHHHHHHHHHCCCcEEEEECCCCCcCCC-CCCCCCCCeEEECCCC-----CEE
Confidence 0 003445789999999999999999999999999999999 887 999999986 899
Q ss_pred EEEEEEEeC---------------------CCCC-CCccceEEEEEecCCCCCCCCceEEEEEEecCCCCHHHHHHHHHh
Q 001089 454 VLIIGGYYG---------------------SGRR-GGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTK 511 (1159)
Q Consensus 454 lvVIG~~~G---------------------~Grr-~g~~gsfllg~~d~~~~~~~~~~f~~v~kVgtG~sdeel~~l~~~ 511 (1159)
++|||+++| .|++ .|.+|+|+|+.. + .+|+||||||++++++|...
T Consensus 194 ~vVig~~~g~~~~~~~~~~~~g~~~r~~~~~G~~~~g~~g~ll~~~~---g---------~~~~vgtGftd~~~~~l~~~ 261 (297)
T 1fvi_A 194 ATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDYD---G---------VVFSIGTGFDADQRRDFWQN 261 (297)
T ss_dssp EEEEEEEESCC-------------------CCCTTCCCEEEEEECST---T---------CCEEECSSCCHHHHHHHHHT
T ss_pred EEEEEEEeCccccccccccccccccccccCCCcccCCcEEEEEEccC---C---------eEEEECCCCCHHHHHHHHhh
Confidence 999999999 9988 889999999863 2 25799999999999998764
Q ss_pred hcccccccCCCCCCCCCcccccCCCCCCCcEEEeCCcceEEEEEEeeeeeeecccccCCceeeCceeeeeecCCCc
Q 001089 512 LKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPW 587 (1159)
Q Consensus 512 l~~~~~~~~~~~~~pP~~~~~~~~~~~~Pdvwi~~P~~s~Vlev~a~i~~i~s~~~~~g~tLRFPR~~riR~DK~~ 587 (1159)
+. | + ...|+||++... +...+||||||.++|+||+|
T Consensus 262 ~~-------------p-~-------------------~g~v~ev~~~~~-------t~~g~lRfP~f~r~R~Dk~~ 297 (297)
T 1fvi_A 262 KE-------------S-Y-------------------IGKMVKFKYFEM-------GSKDCPRFPVFIGIRHEEDR 297 (297)
T ss_dssp HH-------------H-H-------------------TTCEEEEEEECC------------CEEEEEEEEC-----
T ss_pred cC-------------c-c-------------------cCcEEEEEEEEe-------CCCCCccCCeEEEEEcCCCC
Confidence 32 1 1 013677876332 22247999999999999986
No 9
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=100.00 E-value=5.5e-42 Score=380.29 Aligned_cols=248 Identities=25% Similarity=0.439 Sum_probs=202.1
Q ss_pred CCCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhHhcCC--CeeecchHHHHHhc
Q 001089 652 GETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG--DVIHYSWVLDCCSQ 729 (1159)
Q Consensus 652 ~~s~lF~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~~~~~Th~Ia~~~~~~k~~~a~~~~--~VV~p~WV~dCi~~ 729 (1159)
++++||+|+.|||+++....++++|+++|.+|||++++|++. .||+|++++.+.|++++++++ +||+|+||+||+++
T Consensus 6 ~~s~lF~G~~f~V~sg~~~~~k~~L~~lI~~~GG~v~~n~~~-~t~~iIa~~~~~k~~~~~~~g~~~IV~p~Wv~Dci~~ 84 (263)
T 3ii6_X 6 KISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGP-DTYCVIAGSENIRVKNIILSNKHDVVKPAWLLECFKT 84 (263)
T ss_dssp CCCCTTTTCEEEECCCC--CCHHHHHHHHHHTTCEECSSCCT-TEEEEECSSCCHHHHHHHHSCSCCEECHHHHHHHHHH
T ss_pred cCcccCCCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCC-CEEEEEeCCCCHHHHHHHhcCCCCEeehHHHHHHHhc
Confidence 578999999999998888889999999999999999999985 577777788889999998864 99999999999999
Q ss_pred CccCCCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCc------chhHHHhhhcCCC-CCCCc
Q 001089 730 KKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDP------KTIDYYKKKYCPQ-DKWSC 802 (1159)
Q Consensus 730 ~~lLp~~p~~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~~~s~~~------~~i~~l~~~~~~~-~~~~l 802 (1159)
+++||++|+|++++++++++.+++++|+|||||+.++|+++|+++|++|...... ..+++++.+++.+ .++.|
T Consensus 85 ~~llp~~p~~~~~~~~~~~~~~~~~~D~~GDsy~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 164 (263)
T 3ii6_X 85 KSFVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFIDTDLNQLKEVFSGIKNSNEQTPEEMASLIADLEYRYSWDCSPLSM 164 (263)
T ss_dssp TSCCCCCGGGEEECCHHHHHHTTTTBCTTSCBSSSCCCHHHHHHHHHSCCCCCSCCHHHHHHHHHHHHHHHTCTTCGGGT
T ss_pred CCcCCCCHHHHhhCCHHHHHHHHHhccccCCccCCcCCHHHHHHHHHhCcccccCCchhhHHHHHHHHHhhcccCCcchh
Confidence 9999999999999999999999999999999999999999999999999753321 2355666666654 58899
Q ss_pred CCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCCC-ceEEEEeccCCcccchhhHHHHHHHHhhhhcc
Q 001089 803 FHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN-ATHVVVLSVLGYDVNFNSLTESFTAREKHLLW 881 (1159)
Q Consensus 803 F~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~-vTHVIV~~~~~~~~~~~~l~~~l~~~~~~~~~ 881 (1159)
|+||+|||+.+... +.+...+.+..++++++.|+++||++++.+++ ||||||.+..+....++.+++ ..
T Consensus 165 F~~~~vy~~~~~~~-~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~vTHVVv~~~~~r~~~~~~~~~---------~~ 234 (263)
T 3ii6_X 165 FRRHTVYLDSYAVI-NDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRR---------TF 234 (263)
T ss_dssp TTTCEEEECCBSST-TCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCEEEECSCCTTHHHHHHHHH---------TC
T ss_pred hCCeEEEEeccccc-CCcccccchhHHHHHHHHHHccCCEEecCCCCCceEEEECCCCccHHHHHHHHh---------hc
Confidence 99999999987532 12222222335678899999999999999984 999999863321111222221 12
Q ss_pred CCccEEecccHHHHHHHcCCccCCCCCCC
Q 001089 882 NKKLHVVRSQWLEDCLAKEQKSEEYEYSL 910 (1159)
Q Consensus 882 ~~~~~IVs~~WL~~ci~~g~~v~E~~Y~v 910 (1159)
.+.++||+++||++|+++|+++||++|.|
T Consensus 235 ~~~~~iV~~~Wv~dci~~~~~l~E~~Y~i 263 (263)
T 3ii6_X 235 KRKFKILKESWVTDSIDKCELQEENQYLI 263 (263)
T ss_dssp SSCCEEEETHHHHHHHHTTSCCCGGGTBC
T ss_pred CCCCEEeChHHHHHHHHcCCcCCHhhCCC
Confidence 46799999999999999999999999975
No 10
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=100.00 E-value=4.9e-41 Score=366.38 Aligned_cols=215 Identities=41% Similarity=0.651 Sum_probs=191.9
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhCChHHHHHHHHHHHhhcC------------CCchHHHHHHHhCCCCCCCccccCCCHH
Q 001089 1 MTKTEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYC------------DSVDYFSALRLILPSLDRERGSYGLKES 68 (1159)
Q Consensus 1 ~~~~~~~~F~~l~~lle~i~~~~~~~~K~~~l~~~l~~~~------------~~~d~~p~lrLllP~~d~~r~~ygike~ 68 (1159)
|+++++|+|+.||++|++|++++++.+|+++|.+||..|+ .+.++||++||++|+.|++|++|||+++
T Consensus 8 ~~~~~~~~F~~l~~~~e~Ie~ts~rl~k~~il~~f~~~~~~~~~~l~~~~~~~~~dly~~l~ll~P~~d~~r~~ygi~e~ 87 (240)
T 4htp_A 8 QTVASHVPFADLCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDALHKNHKDVTDSFYPAMRLILPQLERERMAYGIKET 87 (240)
T ss_dssp CCGGGTSBHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTTTCSSCCCCSHHHHHHHSGGGCCSSCCCCCCHH
T ss_pred cccccCCcHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccccccCcccCcchHHHHHHHhCccccccccccCCCHH
Confidence 6889999999999999999999999999999999999983 2578999999999999998889999999
Q ss_pred HHHHHHHHHhCCCcChHHHHHHhhhhcCCC-CCCCCCHHHHHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhhh---HHH
Q 001089 69 VLANCLIDALGMSKDSADAVRLINWRKGGA-APNAGNFPMVAAEVLQRRQGMISGGLTIKELNDLLDRLASSEN---RAE 144 (1159)
Q Consensus 69 ~L~k~~~~~lgl~~~s~~~~~L~~wk~~~~-~~~~GD~~~~a~~vl~~r~~~~~~~LTi~eVn~~Ld~LA~~~~---~~~ 144 (1159)
+|+|+|++++|+++++.++.+|.+|++++. +...||||.+|++++++|+.. +++|||.+||+.|++||..+| +..
T Consensus 88 ~L~Kai~~~~g~~~~~~~~~~L~~wk~~~~~~~~~GDlg~va~~~~~~r~~~-~~~LTv~~V~~~L~~IA~~~g~~s~~~ 166 (240)
T 4htp_A 88 MLAKLYIELLNLPRDGKDALKLLNYRTPTGTHGDAGDFAMIAYFVLKPRCLQ-KGSLTIQQVNDLLDSIASNNSAKRKDL 166 (240)
T ss_dssp HHHHHHHHHTTCCTTSHHHHHHHTC----------CCHHHHHHHHHTTSSCC-SCCCBHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHCCCcchHHHHHHHhccccccccccCCCHHHHHHHHHHccCCC-CCCcCHHHHHHHHHHHHHhhCcccHHH
Confidence 999999999999999999999999998754 477899999999999887754 378999999999999999876 455
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhccCCcccccccccCccHHHHhhhcCCHHHHHHHHhhhhcccccc
Q 001089 145 KISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQ 216 (1159)
Q Consensus 145 k~~il~~ll~~~s~~E~k~l~RiIlkdLriGi~e~til~~~hpda~~~~~~~~dL~~V~~~L~~~~~~~~~~ 216 (1159)
|..+|..||.+||+.|+|||+|||+|+||+|+++++|+.+|||+++++|++++||+.||+.|++|..++...
T Consensus 167 k~~~l~~Ll~~~t~~E~k~liRiil~~lriG~~e~~vl~a~h~~~~~a~~~~~dL~~V~~~l~~~~~~L~~~ 238 (240)
T 4htp_A 167 IKKSLLQLITQSSALEQKWLIRMIIKDLKLGVSQQTIFSVFHNDAAELHNVTTDLEKVCRQLHDPSVGLSDI 238 (240)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHTCCCCSSCHHHHHHHHCTTHHHHHHHHCCHHHHHHHTCSTTSCTTC-
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHhcccccCccHhHHHHHhChhHHHHHHhhCCHHHHHHHHhCchhhHhhc
Confidence 678999999999999999999999999999999999999999999999999999999999999887777653
No 11
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-35 Score=329.10 Aligned_cols=246 Identities=18% Similarity=0.290 Sum_probs=169.4
Q ss_pred CCCcccCeEEEEEcCC------CCCChHHHHHHHHHcCCEEEecCCCCc----eEEEEecCCChhhHhHhcCC-Ceeecc
Q 001089 653 ETSIFSDMVFYFVNVP------PAYSLDSLHKMVVENGGTFSMNLNNSV----THCVAADNKGLKYEAAKRRG-DVIHYS 721 (1159)
Q Consensus 653 ~s~lF~G~~F~vv~~~------~~~~k~eLe~lI~~~GG~iv~n~~~~~----Th~Ia~~~~~~k~~~a~~~~-~VV~p~ 721 (1159)
.++||+|+.|||+++. ...++++|+++|++|||++++++.... +|+|+++..+++++.+.+.+ +||+|+
T Consensus 2 ~s~lF~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~~~~~t~~~~~~~iI~~~~t~k~~~~~~~~~~vV~p~ 81 (264)
T 1z56_C 2 ISNIFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISCKTTTECKALIDRGYDILHPN 81 (264)
T ss_dssp -CCCCCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCCSSCCCCCSSCCEEEECSCCGGGGGGTTTTCCCBCSS
T ss_pred ccccCCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeecCCCCccCccceEEEecCCcHHHHHHHhCCCCEEech
Confidence 5789999999997653 245799999999999999988765322 33444677889998887776 999999
Q ss_pred hHHHHHhcCccCCCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhHHHhhhc-CCCCCC
Q 001089 722 WVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKY-CPQDKW 800 (1159)
Q Consensus 722 WV~dCi~~~~lLp~~p~~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~~~s~~~~~i~~l~~~~-~~~~~~ 800 (1159)
||+||+++++++|++|||+++.++.+++.++.++|+|||||+.++++++|+.++++|........ ++..+ ....+.
T Consensus 82 Wv~dci~~~~llp~~~y~~~~~~~~~~~~~~~~~d~~gdsy~~~~~~~~l~~~l~~~~~~~~~~~---~~~~~~~~~~~~ 158 (264)
T 1z56_C 82 WVLDCIAYKRLILIEPNYCFNVSQKMRAVAEKRVDCLGDSFENDISETKLSSLYKSQLSLPPMGE---LEIDSEVRRFPL 158 (264)
T ss_dssp TTHHHHSSCSCCCCCSCBSCCCGGGTHHHHGGGBCSSSCBSSSCCCHHHHHHTTSCCSCCCCCCC---CSSCCSCCCCCC
T ss_pred HHHHHhhcCCCCCCChHHhhcCCHHHHHHHHHhccccCCccccCCCHHHHHHHHHhcccccchhh---hhhhcccccCch
Confidence 99999999999999999999999999999999999999999999999999999998865321111 11111 223578
Q ss_pred CcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCCCceEEEEeccCCc--ccchhhHHHHHHHHhhh
Q 001089 801 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGY--DVNFNSLTESFTAREKH 878 (1159)
Q Consensus 801 ~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~vTHVIV~~~~~~--~~~~~~l~~~l~~~~~~ 878 (1159)
.||+||+|||+++... ..++.+..+|+++||+++++++.+||+||..+++. ......+++++......
T Consensus 159 ~lF~g~~~yl~~~~~~----------~~~~~l~~~i~~~GG~v~~~l~~~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (264)
T 1z56_C 159 FLFSNRIAYVPRRKIS----------TEDDIIEMKIKLFGGKITDQQSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKA 228 (264)
T ss_dssp C------------------------------CHHHHHHHTTSCCCCSSSCSEEECCCSSTTTHHHHSSHHHHTTTTTTTS
T ss_pred hhhCCeEEEEecCCCc----------hhHHHHHHHHHHcCCEEecccCCCEEEEEeCCCccchHHHHHHHHHHHHhhccc
Confidence 8999999999986421 12457888999999999999998777777653321 11123344433211000
Q ss_pred hccCCc-cEEecccHHHHHHHcCCccCCCCCCCC
Q 001089 879 LLWNKK-LHVVRSQWLEDCLAKEQKSEEYEYSLK 911 (1159)
Q Consensus 879 ~~~~~~-~~IVs~~WL~~ci~~g~~v~E~~Y~v~ 911 (1159)
...... ++||+++||++|+++|++++|+.|.+.
T Consensus 229 ~~~~~~~~~iV~~~Wv~dci~~~~ll~e~~Y~~~ 262 (264)
T 1z56_C 229 SDTIPKIARVVAPEWVDHSINENCQVPEEDFPVV 262 (264)
T ss_dssp SSSCCCCCEEECTHHHHHHHTTSCCCSSCCC---
T ss_pred ccccCCCCEEecHHHHHHHHHcCCcCCHHHcCCC
Confidence 000123 699999999999999999999999764
No 12
>1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} SCOP: b.40.4.6 d.142.2.3
Probab=100.00 E-value=6.5e-33 Score=324.18 Aligned_cols=312 Identities=16% Similarity=0.177 Sum_probs=211.7
Q ss_pred hhcCCHHHHHHHHhhhhccccccCcccCCccccccccccCChHHHH-HhcCCCcEEEEEecceEEEEEEE-----eCCEE
Q 001089 194 NVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAW-RKLHGKEVVIECKFDGDRIQIHK-----NGSEI 267 (1159)
Q Consensus 194 ~~~~dL~~V~~~L~~~~~~~~~~~i~~g~p~~PMLA~~~~~~~~~~-~k~~~~~~~vE~K~DGeR~qih~-----~g~~v 267 (1159)
.++..|..+|..|.+.. ...|....|+... ...+ ..+...+|++|+||||+|+|+|+ .|+.+
T Consensus 20 ~~~~~l~~~v~~l~~~~-------~~~FPg~~Pvsl~-----~~~l~~~l~~~~~~ve~K~DG~R~ll~~~~~~~~g~~v 87 (395)
T 1p16_A 20 EETKELRLMVAELLGRR-------NTGFPGSQPVSFE-----RRHLEETLMQKDYFVCEKTDGLRCLLFLINDPDKGEGV 87 (395)
T ss_dssp HHHHHHHHHHHHHHTCS-------CCSCCCEEEEECC-----HHHHHTHHHHSCEEEEEEECSEEEEEEEEEETTTEEEE
T ss_pred HHHHHHHHHHHHHHCCC-------CCCCCCCceeccc-----HHHHHHhhCcCCEEEEECccceEEEEEEeecccCCCEE
Confidence 45567888888776421 1122222333211 1223 34445689999999999999999 56889
Q ss_pred EEEecCCCCcC---cchhhHHHHHHH-hcccCceeecceEEEEeCCCCcccccccHHHHHHHhhcCCCCCCCeEEEEEee
Q 001089 268 HYFSRSFLDHS---EYGHAMSKIIEQ-NVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDV 343 (1159)
Q Consensus 268 ~~fSR~g~d~t---~~~p~l~~~l~~-~~~~~~~ILDGElv~~d~~~~~~~pFg~lq~i~~~~r~~~~~~~~~~~~vFDi 343 (1159)
.++||+|++++ .+||.+.+.... .....++|||||||+++... ...+++|++|||
T Consensus 88 ~L~sR~~~~~~i~~~~FP~~~~~~~~~~~~~~~~vLDGElV~~~~~~---------------------~~~~~~f~~FDl 146 (395)
T 1p16_A 88 FLVTRENDYYFIPNIHFPLSVNETREKPTYHHGTLLDGELVLENRNV---------------------SEPVLRYVIFDA 146 (395)
T ss_dssp EEEETTCCEEECCSCCCCSCTTCCSSSCCCCSSEEEEEEEEEECCSS---------------------SCCEEEEEEEEE
T ss_pred EEEeCCCceEEeccccCCcccccccchhccCCcceeeeEEEEeccCC---------------------CcceeEEEEEEE
Confidence 99999999964 478876543210 11256899999999976310 125789999999
Q ss_pred eecCCccccCCCHHHHHHHHHHhh-ccCCCccee---eccCCCCCccccCCCCCccceecCCHHHHHHHHHH--HHHcCC
Q 001089 344 LYVGDTSVIHQSLKERHELLQKVV-KPSKGRLET---LVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKE--TIENRD 417 (1159)
Q Consensus 344 L~lnG~~l~~~pl~eRr~~L~~~i-~~~~~~~~i---~~p~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~--ai~~g~ 417 (1159)
|++||++|+++||.+|+++|++++ .+....+.. +.......++|+.. .......+.++|+. ++..|.
T Consensus 147 L~~~G~dl~~~pl~eR~~~L~~~i~~~~~~~~~~~~~~~~~~~~pf~v~~~-------~~~~~~~~~~~~~~~~~~~~g~ 219 (395)
T 1p16_A 147 LAIHGKCIIDRPLPKRLGYITENVMKPFDNFKKHNPDIVNSPEFPFKVGFK-------TMLTSYHADDVLSKMDKLFHAS 219 (395)
T ss_dssp EEETTEECTTSCHHHHHHHHHHHTHHHHHHHHHHCHHHHSCTTSCCEEEEC-------CCEEGGGTHHHHTTGGGCSSCE
T ss_pred EEECCeEcccCCHHHHHHHHHHHhhcccHhhhhcCccccccccCceEEEEe-------cchhHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999964 321100000 00000001111110 01123445666665 346899
Q ss_pred ceEEEecCCCCCcCCCCCCCeEEEcccccccCCcccEEEEEEEe--------CCCCCCCcc---ce----EEEEEecCCC
Q 001089 418 EGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYY--------GSGRRGGEV---AQ----FLVALAERPA 482 (1159)
Q Consensus 418 EGlVlK~~ds~Y~pGkRs~~WlKiKpey~~~g~~lDlvVIG~~~--------G~Grr~g~~---gs----fllg~~d~~~ 482 (1159)
||||+|+.+|+|.+|+ +..|+|+|+.|. .++|++|+++++ |+|++ +.+ ++ |.+.++++..
T Consensus 220 EGlI~K~~ds~Y~~Gr-~~~wlKwK~~~~---~TvDfvl~~~~~~~~~~~~~g~G~~-~~~~dy~~~p~~~~l~v~~~~~ 294 (395)
T 1p16_A 220 DGLIYTCAETPYVFGT-DQTLLKWKPAEE---NTVDFQLEFVFNEVQDPDLDERDPT-STYLDYDAKPNLIKLRVWQGSN 294 (395)
T ss_dssp EEEEEEESSSCCCSEE-EEEEEEECCGGG---CCEEEEEEEECEEEECTTSCTTSTT-CEEEECSSCCSEEEEEEECSTT
T ss_pred CeEEEEeCCCCcCCCC-ccceEEEecCCC---eEEEEEEEEEecccccccccccCcc-ccccccccccceeEEEEEeCCc
Confidence 9999999999999995 469999999764 589999998876 78876 555 33 7778886542
Q ss_pred CCCCCceEEEEEEecCCCCHHHHHHHHHhhcccccccCCCCCCCCCcccccCCCCCCCcEEEeCCcceEEEEEEeeeeee
Q 001089 483 PDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTI 562 (1159)
Q Consensus 483 ~~~~~~~f~~v~kVgtG~sdeel~~l~~~l~~~~~~~~~~~~~pP~~~~~~~~~~~~Pdvwi~~P~~s~Vlev~a~i~~i 562 (1159)
.++.|+++ |||++++++|.+.++++ ...|+||..+.
T Consensus 295 ------~~~~f~~~--~ltd~e~~~l~~~~~~~---------------------------------~~~IvEc~~~~--- 330 (395)
T 1p16_A 295 ------VHTDFAKL--DLSDDDWERLKALEQPL---------------------------------QGRIAECRQST--- 330 (395)
T ss_dssp ------CEEEEEEE--CCCHHHHHHHHHSSSCC---------------------------------TTCEEEEEECS---
T ss_pred ------ccceeeEE--EeCHHHHHHhHhhcccC---------------------------------CCEEEEEEeec---
Confidence 46778887 89999999887543211 12478887642
Q ss_pred ecccccCCceeeCceeeeeecCCC-ccCcCCHHHHHHHHHc
Q 001089 563 RSEVFSAPYSLRFPRIDRVRYDKP-WHDCLDVQSFVELVHS 602 (1159)
Q Consensus 563 ~s~~~~~g~tLRFPR~~riR~DK~-~~d~~t~~el~~l~~~ 602 (1159)
+ ..| ||||.|+|+||+ +++..|++++.+++..
T Consensus 331 -~---~~g----~wr~~R~R~DK~~pN~~~t~~~vl~si~~ 363 (395)
T 1p16_A 331 -T---KKG----YWEMLRFRNDKSNGNHISVVEKILVSIKD 363 (395)
T ss_dssp -S---STT----EEEEEEECTTCSSCCBHHHHHHHHHHHHH
T ss_pred -C---CCC----ccEEEEEeCCCCCcChHHHHHHHHHHHHc
Confidence 1 244 999999999999 8888888888887753
No 13
>1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A {Paramecium bursaria chlorella virus 1} SCOP: b.40.4.6 d.142.2.3 PDB: 1ckn_A* 1cko_A* 1ckn_B*
Probab=99.96 E-value=1.9e-28 Score=279.52 Aligned_cols=236 Identities=18% Similarity=0.222 Sum_probs=164.9
Q ss_pred cCCCcEEEEEecceEEEEEEEe---C-CEEEEEecCCCCcCcchhhHHHHHHHhcccCceeecceEEEEeCCCCcccccc
Q 001089 242 LHGKEVVIECKFDGDRIQIHKN---G-SEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFG 317 (1159)
Q Consensus 242 ~~~~~~~vE~K~DGeR~qih~~---g-~~v~~fSR~g~d~t~~~p~l~~~l~~~~~~~~~ILDGElv~~d~~~~~~~pFg 317 (1159)
+...+|++|+||||+|+|+|++ | +.+.+|||+|++++..+|++.. ....++|||||||++...
T Consensus 72 L~~~~y~ve~K~DG~R~ll~~~~~~g~g~v~L~sR~~~~~t~~fp~~~~-----~~~~~~vLDGElv~~~~~-------- 138 (330)
T 1ckm_A 72 LKQNKYVVSEKTDGIRFMMFFTRVFGFKVCTIIDRAMTVYLLPFKNIPR-----VLFQGSIFDGELCVDIVE-------- 138 (330)
T ss_dssp HHHSCEEEEEEECSEEEEEEEEEETTEEEEEEECTTCCEEECCCSCCCT-----TGGGCEEEEEEEEEETTT--------
T ss_pred CCcCCEEEEECcceEEEEEEEEecCCCCEEEEEeCCCCEEeccChhhhh-----ccCCCeeEEEEEEEEcCC--------
Confidence 4445799999999999999998 4 7899999999999987776531 235699999999995320
Q ss_pred cHHHHHHHhhcCCCCCCCeEEEEEeeeecCCccccCCCHHHHHHHHHHhhccCCCcceeeccCCCCCccccCCCCCccce
Q 001089 318 SNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSL 397 (1159)
Q Consensus 318 ~lq~i~~~~r~~~~~~~~~~~~vFDiL~lnG~~l~~~pl~eRr~~L~~~i~~~~~~~~i~~p~~~~~~~v~~~~~~~~~~ 397 (1159)
..++|++||||++||++|++.||.+|+++|++++...... +. ..++|+.. ...
T Consensus 139 ----------------~~~~f~vFDlL~~~G~dl~~~pl~eRr~~L~~~l~~~~~~-----~~--~~~~i~~~----~~~ 191 (330)
T 1ckm_A 139 ----------------KKFAFVLFDAVVVSGVTVSQMDLASRFFAMKRSLKEFKNV-----PE--DPAILRYK----EWI 191 (330)
T ss_dssp ----------------TEEEEEEEEEEEETTEECTTSCHHHHHHHHHHHHTTCCCC-----TT--SSSEEEEC----CCE
T ss_pred ----------------CeEEEEEEeeeeeCCcccccCCHHHHHHHHHHHHhhhccc-----CC--CCeEEEEE----EEE
Confidence 0278999999999999999999999999999998632100 00 00111110 011
Q ss_pred ecCCHHHHHHHHHHHHHc--CCceEEEecCCCCCcCCCCCCCeEEEcccccccCCcccEEEEEEEeCCCCCCCccceEEE
Q 001089 398 VAHNVDEVEKFFKETIEN--RDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLV 475 (1159)
Q Consensus 398 ~~~~~~ei~~~~~~ai~~--g~EGlVlK~~ds~Y~pGkRs~~WlKiKpey~~~g~~lDlvVIG~~~G~Grr~g~~gsfll 475 (1159)
.. +.+++.+-+..++.+ |.||||+|+.+|+|.+| |+.+|+|+||.+. .++|++|++ |.| .+
T Consensus 192 ~~-~~~~~~~~~~~~~~~~yg~EGlI~K~~dspY~~G-r~~~~lKwK~~~~---~tvDfvi~~---g~g---------~~ 254 (330)
T 1ckm_A 192 PL-EHPTIIKDHLKKANAIYHTDGLIIMSVDEPVIYG-RNFNLFKLKPGTH---HTIDFIIMS---EDG---------TI 254 (330)
T ss_dssp ET-TCHHHHHHHHHHHHHHSCEEEEEEEESSSCCCCE-EEEEEEEECSTTC---CCEEEEECS---TTC---------CE
T ss_pred eh-hHHHHHHHHHHHHhccCCCceEEEeeCCCcccCC-CccCeEEEEeCCC---ceEEEEEEc---cCC---------eE
Confidence 12 233333333567778 99999999999999999 5689999999653 489998873 333 23
Q ss_pred EEecCCCCCCCCceEEEEEEecCCCCHHHHHHHHHhhcccccccCCCCCCCCCcccccCCCCCCCcEEEeCCcceEEEEE
Q 001089 476 ALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSI 555 (1159)
Q Consensus 476 g~~d~~~~~~~~~~f~~v~kVgtG~sdeel~~l~~~l~~~~~~~~~~~~~pP~~~~~~~~~~~~Pdvwi~~P~~s~Vlev 555 (1159)
|+++... +.+++|+++. +. + . + ..|+||
T Consensus 255 gl~~~~~-----~~~vp~~~~~---------------k~--------------~---------------~-~--g~IvE~ 282 (330)
T 1ckm_A 255 GIFDPNL-----RKNVPVGKLD---------------GY--------------Y---------------N-K--GSIVEC 282 (330)
T ss_dssp EEEETTT-----TEEEECCCCS---------------SC--------------C---------------C-T--TCEEEE
T ss_pred EEEeCCC-----Cceeeeeeee---------------hh--------------h---------------c-C--CeEEEE
Confidence 5555432 2456665543 00 0 0 2 248888
Q ss_pred EeeeeeeecccccCCceeeCceeeeeecCCCccCcCCHHHHHHHHHc
Q 001089 556 TSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHS 602 (1159)
Q Consensus 556 ~a~i~~i~s~~~~~g~tLRFPR~~riR~DK~~~d~~t~~el~~l~~~ 602 (1159)
..+ +| ||||.|+|+||+ ++++++.+..+..+
T Consensus 283 ~~~----------~G----~wr~~R~R~DK~--~~n~~~t~~~v~~s 313 (330)
T 1ckm_A 283 GFA----------DG----TWKYIQGRSDKN--QANDRLTYEKTLLN 313 (330)
T ss_dssp EEE----------TT----EEEEEEECTTCS--SCCBHHHHHHHHHH
T ss_pred EEE----------CC----ceEEEEEeCCCC--CCCHHHHHHHHHHh
Confidence 653 34 999999999999 56666666666643
No 14
>3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens}
Probab=99.92 E-value=3.4e-26 Score=229.35 Aligned_cols=127 Identities=35% Similarity=0.617 Sum_probs=98.5
Q ss_pred EEEEEecceEEEEEEEeCCEEEEEecCCCCcCcchhhHHH------HHHHhc--ccCceeecceEEEEeCCCCccccccc
Q 001089 247 VVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSK------IIEQNV--LVDRCILDGEMLVWDTSLNRFAEFGS 318 (1159)
Q Consensus 247 ~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~t~~~p~l~~------~l~~~~--~~~~~ILDGElv~~d~~~~~~~pFg~ 318 (1159)
|++|+||||+|||+|++|+++++|||||+++|..+|++.. .+...+ ...+||||||||+||+.++.|.+++.
T Consensus 1 f~~E~K~DG~R~q~~~~g~~v~l~SR~g~d~t~~fPel~~~~~l~~~i~~~~~~~~~~~iLDGEiv~~d~~~~~f~~~~~ 80 (139)
T 3vnn_A 1 FYIETKLDGERMQMHKDGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQTFMQKGT 80 (139)
T ss_dssp CCCCCCCCCEEEEEEEETTEEEEECSSCCBCTTTSCSSTTC--CCSGGGSCCCTTCCEEEEEEEEEEEETTTTEECCC--
T ss_pred CEEEEEECeEEEEEEEECCEEEEEeCCCCCchhhccchhhhcchhHHHHHHHhccCCceEeeeEEEEecCCCCCHHHHHh
Confidence 6899999999999999999999999999999999997653 122222 24789999999999987766666643
Q ss_pred HHHHHHHhhcCCCCCCCeEEEEEeeeecCCccccCCCHHHHHHHHHHhhccCCCccee
Q 001089 319 NQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLET 376 (1159)
Q Consensus 319 lq~i~~~~r~~~~~~~~~~~~vFDiL~lnG~~l~~~pl~eRr~~L~~~i~~~~~~~~i 376 (1159)
...+.+ .......++||++|||||+||++|++.||.+||++|++++.+.++++++
T Consensus 81 ~~~~~~---~~~~~~~~~~~~vFDlL~l~G~~L~~~pl~eRr~~L~~l~~~~~~~~~~ 135 (139)
T 3vnn_A 81 KFDIKR---MVEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPIPGRIEI 135 (139)
T ss_dssp --------------CCEEEEEEEEEEEETTEECSSSCHHHHHHHHHHHCCCBTTBSCB
T ss_pred hhhhhh---hhhccCceEEEEEEEEEeECCcCcccCCHHHHHHHHHHHhhcCCCeEEE
Confidence 211111 0112246899999999999999999999999999999999988877654
No 15
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=8.2e-23 Score=238.45 Aligned_cols=187 Identities=18% Similarity=0.225 Sum_probs=132.5
Q ss_pred HhcCCCcEEEEEecceEEEEEEEe-----C-CEEEEEecCCCCcC---cchhhHHHH----HHHhcccCceeecceEEEE
Q 001089 240 RKLHGKEVVIECKFDGDRIQIHKN-----G-SEIHYFSRSFLDHS---EYGHAMSKI----IEQNVLVDRCILDGEMLVW 306 (1159)
Q Consensus 240 ~k~~~~~~~vE~K~DGeR~qih~~-----g-~~v~~fSR~g~d~t---~~~p~l~~~----l~~~~~~~~~ILDGElv~~ 306 (1159)
..+...+|++++|+||.|+|+++. | +.+.++||++..++ ..||.+.+. +... ...++|||||||++
T Consensus 60 ~~L~~~dY~V~eK~DGiR~Ll~i~~~~~~g~g~v~LidR~~~~~~v~~~~FP~~~~~~~~~~l~~-~~~~TlLDGElV~d 138 (461)
T 3kyh_C 60 EKLLAHDYYVCEKTDGLRVLMFIVINPVTGEQGCFMIDRENNYYLVNGFRFPRLPQKKKEELLET-LQDGTLLDGELVIQ 138 (461)
T ss_dssp HTTSSSCEEEEEEECSEEEEEEEEECTTTCCEEEEEECSSSCEEEECCCCCCCCSSCCSSGGGTC-CCCSEEEEEEEEEE
T ss_pred HHhccCCEEEEEcccceEEEEEEeccccCCCceEEEEeCCCCeEEcccccCCcccccchhhhhhc-cCCCeEEEEEEEec
Confidence 457778999999999999999886 3 68999999999985 357765432 1112 35789999999996
Q ss_pred eCCCCcccccccHHHHHHHhhcCCCCCCCeEEEEEeeeecCCccccCCCHHHHHHHHHHhhcc-CCCcceeeccCC--CC
Q 001089 307 DTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKP-SKGRLETLVPDH--GL 383 (1159)
Q Consensus 307 d~~~~~~~pFg~lq~i~~~~r~~~~~~~~~~~~vFDiL~lnG~~l~~~pl~eRr~~L~~~i~~-~~~~~~i~~p~~--~~ 383 (1159)
... + ....+++|++||||++||++|++.||.+|+++|+++|.. ....+. ..|.. ..
T Consensus 139 ~~~------~--------------~~~~~~~y~~FDlL~~~G~dl~~~pl~eR~~~Le~~I~~P~~~~~~-~~p~~~~~~ 197 (461)
T 3kyh_C 139 TNP------M--------------TKLQELRYLMFDCLAINGRCLTQSPTSSRLAHLGKEFFKPYFDLRA-AYPNRCTTF 197 (461)
T ss_dssp ECT------T--------------TCCEEEEEEEEEEEEETTEECSSSBHHHHHHHHHHTTHHHHHHHHH-HCSTTCSCC
T ss_pred cCC------C--------------CCccceEEEEEEEEeECCcCcccCCHHHHHHHHHHHhcccchhhhh-ccccccccC
Confidence 531 1 012578999999999999999999999999999988732 110000 00000 00
Q ss_pred CccccCCCCCccceecCCHHHHHHHHHH--HHHcCCceEEEecCCCCCcCCCCCCCeEEEcccccccCCcccEEEEE
Q 001089 384 NSHVRPQGEPCWSLVAHNVDEVEKFFKE--TIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIG 458 (1159)
Q Consensus 384 ~~~v~~~~~~~~~~~~~~~~ei~~~~~~--ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKiKpey~~~g~~lDlvVIG 458 (1159)
.+.|+.. ......++..+|+. ++..|.||||+|+.+++|.+|.|+..|+|+||.+. .++|++++=
T Consensus 198 pF~V~~K-------~~~~~~~~~~l~~~~~~l~~~~EGLv~k~~~spY~~Ggr~~~~lKwKp~~~---nTVDF~L~i 264 (461)
T 3kyh_C 198 PFKISMK-------HMDFSYQLVKVAKSLDKLPHLSDGLIFTPVKAPYTAGGKDSLLLKWKPEQE---NTVDFKLIL 264 (461)
T ss_dssp CSEEEEC-------CCEEGGGHHHHHHHHTTCSSCEEEEEEEESSSBCCSSSEEEEEEECCCTTT---CCCEEEEEC
T ss_pred CcEEEec-------cchhhhhHHHHHHhhhhccCCCCeEEEEeCCCCCcCCCcCCCeEEEEcCCC---eeEEEEEEe
Confidence 0011100 00112456666763 37899999999999999999889999999999764 589997653
No 16
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.84 E-value=7.4e-21 Score=214.23 Aligned_cols=183 Identities=23% Similarity=0.352 Sum_probs=145.8
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhHhcCC-CeeecchHHHHHhcCcc
Q 001089 654 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKKL 732 (1159)
Q Consensus 654 s~lF~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~~~~~Th~Ia~~~~~~k~~~a~~~~-~VV~p~WV~dCi~~~~l 732 (1159)
+.+|+|+.||+.+.. ...+.+|.++|..+||+++.+++..+||+|+....+.||..|.+.+ +||+|+||.+|+..++.
T Consensus 103 ~~~l~g~~~~~tG~~-~~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~~t~Ky~~A~~~gi~IV~~~Wl~~c~~~~~~ 181 (298)
T 3olc_X 103 NMVMSDVTISCTSLE-KEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPILLPSWIKTLWEKSQE 181 (298)
T ss_dssp CCTTTTCEEEEESCC-HHHHHHHHHHHHHTTCEECSSCCTTCCEEEESSSCSHHHHHHHHTTCCEECHHHHHHHHHHHHT
T ss_pred ccccCCeEEEeCCCc-HHhHHHHHHHHHHCCCEEecCcCCCeeEEEEeCCCChHHHHHHHCCCeEeeHHHHHHHHHcCCc
Confidence 569999999997554 3478999999999999999999888999999988899999998887 99999999999999988
Q ss_pred CCCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhHHHhhhcCCCCCCCcCCCeEEEEcC
Q 001089 733 LQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYH 812 (1159)
Q Consensus 733 Lp~~p~~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~~~s~~~~~i~~l~~~~~~~~~~~lF~gc~~yl~~ 812 (1159)
+++.++ + |.. . ...+..+|.||+||+.|
T Consensus 182 ~~~~~~-----~---------------~~~-----~---------------------------~~~~~~~f~g~~i~~tG 209 (298)
T 3olc_X 182 KKITRY-----T---------------DIN-----M---------------------------EDFKCPIFLGCIICVTG 209 (298)
T ss_dssp TCCSSG-----G---------------GSC-----G---------------------------GGGBCCTTTTCEEEECS
T ss_pred CCcccc-----c---------------ccc-----c---------------------------ccccccccCCeEEEEeC
Confidence 765431 0 000 0 00134579999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC--CceEEEEeccCCcccchhhHHHHHHHHhhhhccCCccEEecc
Q 001089 813 STEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA--NATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRS 890 (1159)
Q Consensus 813 ~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls--~vTHVIV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~IVs~ 890 (1159)
+.. ..+..+..+|..+||+++..++ .|||||+....+. .+...+ ...++||++
T Consensus 210 ~~~-----------~~r~~l~~li~~~GG~~~~~ls~~~~THLI~~~~~g~--K~~~A~------------~~gi~IV~~ 264 (298)
T 3olc_X 210 LCG-----------LDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPKGQ--KYECAK------------RWNVHCVTT 264 (298)
T ss_dssp CCH-----------HHHHHHHHHHHHTTCEECSSCCTTTCCEEECSSSCSH--HHHHHH------------HTTCEEECH
T ss_pred CCC-----------ccHHHHHHHHHHcCCEEeceecCCCceEEEEeCCCch--HHHHHH------------HCCCeEEeH
Confidence 752 1357899999999999999998 4999999875432 122111 245899999
Q ss_pred cHHHHHHHcCCccCCCCCCCCCCC
Q 001089 891 QWLEDCLAKEQKSEEYEYSLKPTG 914 (1159)
Q Consensus 891 ~WL~~ci~~g~~v~E~~Y~v~~~~ 914 (1159)
+||++|++.|+++||+.|.+....
T Consensus 265 ~Wl~dsi~~g~~lde~~Y~l~~~~ 288 (298)
T 3olc_X 265 QWFFDSIEKGFCQDESIYKTEPRP 288 (298)
T ss_dssp HHHHHHHHHTSCCCGGGSBSCC--
T ss_pred HHHHHHHHCCCCCCchhcCCCCCc
Confidence 999999999999999999987665
No 17
>3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD, lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP GUN; 2.81A {Mus musculus} PDB: 3s24_A
Probab=99.83 E-value=2.3e-21 Score=220.88 Aligned_cols=177 Identities=19% Similarity=0.313 Sum_probs=114.8
Q ss_pred cCCCcEEEEEecceEEEEEEEe-CCEEEEEecCCCCcC---cchhhHHHHHHHhcccCceeecceEEEEeCCCCcccccc
Q 001089 242 LHGKEVVIECKFDGDRIQIHKN-GSEIHYFSRSFLDHS---EYGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFG 317 (1159)
Q Consensus 242 ~~~~~~~vE~K~DGeR~qih~~-g~~v~~fSR~g~d~t---~~~p~l~~~l~~~~~~~~~ILDGElv~~d~~~~~~~pFg 317 (1159)
+...+|++|+||||+|+|+++. ++++.++||+|.+++ ..||.+... .....++|||||||+++.. +
T Consensus 60 L~~~~y~v~~K~DG~R~ll~i~~~~~v~L~sR~~~~~~~~~~~FP~~~~~---~~~~~~tvLDGElV~~~~~-g------ 129 (343)
T 3rtx_A 60 LEQKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDL---RMHLSNTLLDGEMIIDKVN-G------ 129 (343)
T ss_dssp HHHSCEEEEEECCCEEEEEEECSTTCEEEECTTCCEEEETTCCCEETTEE---EEECCSEEEEEEEEEEESS-S------
T ss_pred hccCCEEEEECCCceEEEEEEEcCCEEEEEeCCCCeEEeccccCCcchhh---hccCCCeEEEEEEEEecCC-C------
Confidence 3345899999999999999998 789999999999985 367875442 1245789999999998642 1
Q ss_pred cHHHHHHHhhcCCCCCCCeEEEEEeeeecCCccccCCCHHHHHHHHHHh-hccCC-----CcceeeccCCCCCccccCCC
Q 001089 318 SNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKV-VKPSK-----GRLETLVPDHGLNSHVRPQG 391 (1159)
Q Consensus 318 ~lq~i~~~~r~~~~~~~~~~~~vFDiL~lnG~~l~~~pl~eRr~~L~~~-i~~~~-----~~~~i~~p~~~~~~~v~~~~ 391 (1159)
...+.|++||+|++||+++++.||.+|+++|++. +.+.. +.+ ..+ ..++.|+..
T Consensus 130 ---------------~~~~~~~~FDlL~~~G~dl~~~pl~eR~~~L~~~i~~p~~~~~~~~~~--~~~--~~pf~vr~K- 189 (343)
T 3rtx_A 130 ---------------QAVPRYLIYDIIKFNAQPVGDCDFNIRLQCIEREIISPRHEKMKTGLI--DKT--QEPFSVRPK- 189 (343)
T ss_dssp ---------------SEEEEEEEEEEEEBTTBCGGGSCHHHHHHHHHHHTHHHHHHHHHHSSC--CTT--TSSSEEEEC-
T ss_pred ---------------cEeeEEEEEEEEeECCcCcccCCHHHHHHHHHHHhhhHHHHHhhcccc--ccc--CCCcEEEEE-
Confidence 0246899999999999999999999999999974 43210 000 000 001122211
Q ss_pred CCccceecCCHHHHH-HHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEcccccccCCcccEEE
Q 001089 392 EPCWSLVAHNVDEVE-KFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLI 456 (1159)
Q Consensus 392 ~~~~~~~~~~~~ei~-~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKiKpey~~~g~~lDlvV 456 (1159)
..+.....+++. .-|..++..+.||||++..+ +|.+| |+.+|+|+||.+. .++|+.+
T Consensus 190 ---~~~~~~~~~~ll~~~~~~~l~~~~dGlIf~~~~-~Y~~G-~~~~~lKwKp~~~---~tvDF~l 247 (343)
T 3rtx_A 190 ---QFFDINISRKLLEGNFAKEVSHEMDGLIFQPIG-KYKPG-RCDDILKWKPPSL---NSVDFRL 247 (343)
T ss_dssp ---CCEEGGGHHHHSCC----------CEEEEEESS-CCCCE-EEEEEEEECCSTT---CC-----
T ss_pred ---EeEehhhHHHHHhhhhHhhcCCCCCeEEEEECc-cCcCC-CCcceEEEecCcc---eEEEEEE
Confidence 012222333332 12467889999999999999 99987 7889999999764 4789866
No 18
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=99.78 E-value=5.2e-19 Score=195.49 Aligned_cols=196 Identities=14% Similarity=0.171 Sum_probs=137.1
Q ss_pred ccCCCCcccCeEEEEEcCCC----------------------------CCChHHHHHHHHHcCCEEEecCCCC------c
Q 001089 650 IKGETSIFSDMVFYFVNVPP----------------------------AYSLDSLHKMVVENGGTFSMNLNNS------V 695 (1159)
Q Consensus 650 ~~~~s~lF~G~~F~vv~~~~----------------------------~~~k~eLe~lI~~~GG~iv~n~~~~------~ 695 (1159)
+...+.||.|+.||+..... ...|++|+++|.+|||++++++... +
T Consensus 9 ~p~~~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~~ 88 (259)
T 1kzy_C 9 LPLNKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQ 88 (259)
T ss_dssp CCSSTTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTCE
T ss_pred CCCCCcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCCC
Confidence 44568899999999965432 1468899999999999999887643 5
Q ss_pred eEEEEec-CCChhhHhHhcCC-CeeecchHHHHHhcCccCCCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHH
Q 001089 696 THCVAAD-NKGLKYEAAKRRG-DVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQ 773 (1159)
Q Consensus 696 Th~Ia~~-~~~~k~~~a~~~~-~VV~p~WV~dCi~~~~lLp~~p~~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~~L~~ 773 (1159)
||||+.. ..+.||..+...+ +||+++||.||+++++++|+.+| ++....... ...+
T Consensus 89 t~LIa~~~~rt~K~l~ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y-~l~~g~s~~----------~~~~----------- 146 (259)
T 1kzy_C 89 CLLIADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNY-LLPAGYSLE----------EQRI----------- 146 (259)
T ss_dssp EEEEESSCCCSHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGGS-BCCCEEETT----------TTEE-----------
T ss_pred eEEEcCCCCCcHHHHHHHhcCCCCccHHHHHHHHHcCCcCCHHHc-cCCCCcccc----------cchh-----------
Confidence 8898644 4678988887677 99999999999999999999875 443211000 0000
Q ss_pred HhhccCCCCCcchhHHHhhhcCCCCCCCcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-----
Q 001089 774 LLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA----- 848 (1159)
Q Consensus 774 ll~~~~~s~~~~~i~~l~~~~~~~~~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls----- 848 (1159)
........+|+|+.||+.+... .. ..+.+..+++++||+++..+.
T Consensus 147 --------------------~~~~~~~~LF~G~~I~i~~~~~---~~-------~~~~~~~Il~~~Ga~vv~~~~s~~~~ 196 (259)
T 1kzy_C 147 --------------------LDWQPRENPFQNLKVLLVSDQQ---QN-------FLELWSEILMTGGAASVKQHHSSAHN 196 (259)
T ss_dssp --------------------ECCCCCCCTTTTCEEEEEESCT---TT-------THHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred --------------------hhccccCCCCCCeEEEEecCCC---CC-------HHHHHHHHHHhcCCEEEeccccchhh
Confidence 0011235689999999987642 11 135678899999999887652
Q ss_pred -----CceEEEEeccCCcccchhhHHHHHHHHhhhhccCCccEEecccHHHHHHHcCCccCCCCCC
Q 001089 849 -----NATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYS 909 (1159)
Q Consensus 849 -----~vTHVIV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~IVs~~WL~~ci~~g~~v~E~~Y~ 909 (1159)
+.+||||.+.. . .. . ..+ . .....++||+.+||.+||..|++++++.|+
T Consensus 197 ~d~~~~~~~viv~d~~-~-~~-~-~~~-~-------a~~~~i~iVs~EWv~~sI~~~~ll~~~~hp 250 (259)
T 1kzy_C 197 KDIALGVFDVVVTDPS-C-PA-S-VLK-C-------AEALQLPVVSQEWVIQCLIVGERIGFKQHP 250 (259)
T ss_dssp CCSCGGGCSEEEECTT-C-CH-H-HHH-H-------HHHHTCCEECHHHHHHHHHHTSCCCTTSSG
T ss_pred hhccCCCCeEEEECCC-C-hH-H-HHH-H-------HHhcCCCEecHHHHHHHHHhCCcCCCCcCc
Confidence 35777776432 1 11 1 111 1 012458999999999999999999998773
No 19
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=99.77 E-value=2.5e-18 Score=186.56 Aligned_cols=199 Identities=16% Similarity=0.167 Sum_probs=134.8
Q ss_pred CcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEec------CCChhhHhHhcCC-CeeecchHHHHH
Q 001089 655 SIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAAD------NKGLKYEAAKRRG-DVIHYSWVLDCC 727 (1159)
Q Consensus 655 ~lF~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~~~~~Th~Ia~~------~~~~k~~~a~~~~-~VV~p~WV~dCi 727 (1159)
..+.++.||+.+.. ...+..|++++..+||+++.+++..+||+|+.. ..+.||..++..+ +||+++||.+|+
T Consensus 3 ~~~~~~~i~~sg~~-~~~~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~Wl~~~~ 81 (229)
T 1l0b_A 3 RAERDISMVVSGLT-PKEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVIKSI 81 (229)
T ss_dssp CCCCCCEEEEESCC-HHHHHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEETHHHHHHH
T ss_pred CCCCCeEEEEcCCC-HHHHHHHHHHHHHcCCEEeCCcCCCCCEEEEcCCccccccccHHHHHHHHCCCcEecHHHHHHHH
Confidence 46788999986543 445789999999999999998888899999875 4688999888888 999999999999
Q ss_pred hcCccCCCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhHHHhhhcCCCCCCCcCCCeE
Q 001089 728 SQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCC 807 (1159)
Q Consensus 728 ~~~~lLp~~p~~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~~~s~~~~~i~~l~~~~~~~~~~~lF~gc~ 807 (1159)
++|+++|.++|.+.... +.........+ ... .+..+|.||.
T Consensus 82 ~~~~~~~e~~y~~~~~~-----------------~~~~~~~~~~~---------------~r~-------~~~~lF~g~~ 122 (229)
T 1l0b_A 82 QERKLLSVHEFEVKGDV-----------------VTGSNHQGPRR---------------SRE-------SQEKLFEGLQ 122 (229)
T ss_dssp TTTSCCCSGGGBCCEET-----------------TTCSSSCHHHH---------------HHH-------HC--CCTTCE
T ss_pred HCCCcCChHHeEecccc-----------------ccccccccchh---------------hhh-------hhhhhhcCce
Confidence 99999999876443211 11000000000 000 1236899999
Q ss_pred EEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCCC------ceEEEEeccCC--cccchhhHHHHHHHHhhhh
Q 001089 808 IYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN------ATHVVVLSVLG--YDVNFNSLTESFTAREKHL 879 (1159)
Q Consensus 808 ~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~------vTHVIV~~~~~--~~~~~~~l~~~l~~~~~~~ 879 (1159)
|||++... ... ...|..+|+++||+++..+.. ++|+||..... ....++.+.
T Consensus 123 ~~~~~~~~--~~~--------~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l~---------- 182 (229)
T 1l0b_A 123 IYCCEPFT--NMP--------KDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIG---------- 182 (229)
T ss_dssp EEECSCCS--SSC--------HHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC------------------------
T ss_pred EEEEecCC--CCC--------HHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccchhhhHHHHH----------
Confidence 99987321 112 357789999999999999864 57766644321 011111111
Q ss_pred ccCCccEEecccHHHHHHHcCCccCCCCCCCCCCC
Q 001089 880 LWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTG 914 (1159)
Q Consensus 880 ~~~~~~~IVs~~WL~~ci~~g~~v~E~~Y~v~~~~ 914 (1159)
....++||+++||.+||..+++++++.|.+....
T Consensus 183 -~~~~i~iVs~~WlldsI~~~~~~~~~~Y~l~~~~ 216 (229)
T 1l0b_A 183 -QLCKGRLVMWDWVLDSISVYRCRDLDAYLVQNIT 216 (229)
T ss_dssp ------CEEETHHHHHHHHTTSCCCGGGGBCC---
T ss_pred -HHcCCeEeehhHHHHHHhcCCcCCccceEccccc
Confidence 1346899999999999999999999999877543
No 20
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=99.73 E-value=2.8e-17 Score=176.18 Aligned_cols=197 Identities=19% Similarity=0.210 Sum_probs=135.3
Q ss_pred cCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEec------CCChhhHhHhcCC-CeeecchHHHHHhcC
Q 001089 658 SDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAAD------NKGLKYEAAKRRG-DVIHYSWVLDCCSQK 730 (1159)
Q Consensus 658 ~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~~~~~Th~Ia~~------~~~~k~~~a~~~~-~VV~p~WV~dCi~~~ 730 (1159)
+++.||+.+. ....++.|.++|..+||+++.+++..+||+|+.. ..+.||..++..+ .||+|+||.||+++|
T Consensus 3 ~~~~~~~sg~-~~~~~~~l~~~~~~~G~~~~~~~~~~~THli~~~~~~~~~~rt~k~~~a~~~g~~IV~~~Wl~~~~~~~ 81 (214)
T 1t15_A 3 KRMSMVVSGL-TPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKER 81 (214)
T ss_dssp -CCEEEEESC-CHHHHHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHHHHHHHHTT
T ss_pred CcEEEEECCC-CHHHHHHHHHHHHHhCCEEeCccCCCCcEEEEeCCcccchhhhHHHHHHHhcCCEEeCHHHHHHHHHCC
Confidence 3677787544 3456889999999999999998888899999875 3588998888777 999999999999999
Q ss_pred ccCCCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhHHHhhhcCCCCCCCcCCCeEEEE
Q 001089 731 KLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYF 810 (1159)
Q Consensus 731 ~lLp~~p~~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~~~s~~~~~i~~l~~~~~~~~~~~lF~gc~~yl 810 (1159)
+.+|.++|.+... .+... .....+.. + . .....+|.||.|||
T Consensus 82 ~~~~e~~y~~~~~-----------------~~~~~-~~~~~~~~----------------r--~--~~~~~lF~g~~~~~ 123 (214)
T 1t15_A 82 KMLNEHDFEVRGD-----------------VVNGR-NHQGPKRA----------------R--E--SQDRKIFRGLEICC 123 (214)
T ss_dssp SCCCGGGGBCCEE-----------------TTTBT-TCCHHHHH----------------H--T--CTTSCTTTTCEEEE
T ss_pred CcCChHHeEeecc-----------------ccccc-cccchhhH----------------h--h--cCCCcccCCCEEEE
Confidence 9999887644321 11000 00000000 0 0 01346899999999
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCCC-----ceE-EEEeccCCcccchhhHHHHHHHHhhhhccCCc
Q 001089 811 YHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN-----ATH-VVVLSVLGYDVNFNSLTESFTAREKHLLWNKK 884 (1159)
Q Consensus 811 ~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~-----vTH-VIV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 884 (1159)
++... ... ...|..+|+.+||+++..+.. .+| ||+.++.... +...++ .+.....
T Consensus 124 ~~~~~--~~~--------~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~-~~~~~~--------~~a~~~~ 184 (214)
T 1t15_A 124 YGPFT--NMP--------TDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWT-EDNGFH--------AIGQMCE 184 (214)
T ss_dssp CSCCS--SSC--------HHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCS-SCGGGG--------SSTTTCS
T ss_pred EecCC--CCC--------HHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCccc-chhhHH--------HHHHhcC
Confidence 87321 112 356788999999999998763 224 6555432110 000111 0112356
Q ss_pred cEEecccHHHHHHHcCCccCCCCCCCCC
Q 001089 885 LHVVRSQWLEDCLAKEQKSEEYEYSLKP 912 (1159)
Q Consensus 885 ~~IVs~~WL~~ci~~g~~v~E~~Y~v~~ 912 (1159)
++||+++||.+||..++++|++.|.+..
T Consensus 185 ~~iV~~~Wi~dsi~~~~~l~~~~Y~l~~ 212 (214)
T 1t15_A 185 APVVTREWVLDSVALYQCQELDTYLIPQ 212 (214)
T ss_dssp SCEEEHHHHHHHHHHTSCCCSGGGBCCC
T ss_pred CcEEeccHHHHhHhhcCcCCCcceeecc
Confidence 8999999999999999999999998763
No 21
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=99.72 E-value=2.7e-17 Score=179.79 Aligned_cols=204 Identities=18% Similarity=0.231 Sum_probs=132.3
Q ss_pred CcccCeEEEEEcC--CCCCChHHHHHHHHHcCCEEEec--------CC-C-----------------CceEEEEec-CCC
Q 001089 655 SIFSDMVFYFVNV--PPAYSLDSLHKMVVENGGTFSMN--------LN-N-----------------SVTHCVAAD-NKG 705 (1159)
Q Consensus 655 ~lF~G~~F~vv~~--~~~~~k~eLe~lI~~~GG~iv~n--------~~-~-----------------~~Th~Ia~~-~~~ 705 (1159)
++|+||.|||++. .....+++|+++|.+|||+++.+ +. . ..||+|+.. ..+
T Consensus 1 ~lF~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt 80 (241)
T 2vxb_A 1 LIFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRK 80 (241)
T ss_dssp CTTTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCC
T ss_pred CCCCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCc
Confidence 4899999999876 45678999999999999999886 21 0 137777543 247
Q ss_pred hhhHhHhcCC-CeeecchHHHHHhcCccCCCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCc
Q 001089 706 LKYEAAKRRG-DVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDP 784 (1159)
Q Consensus 706 ~k~~~a~~~~-~VV~p~WV~dCi~~~~lLp~~p~~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~~~s~~~ 784 (1159)
.||..+...+ |||+|+||.||+++++++|+++ |++......... ...-++-..|.... .+
T Consensus 81 ~K~~~ala~gipiV~~~Wi~dc~~~~~~~~~~~-ylL~~~~s~~~~--~~~~~~~~~~~~~~---~l------------- 141 (241)
T 2vxb_A 81 VKYLEALAFNIPCVHPQFIKQCLKMNRVVDFSP-YLLASGYSHRLD--CTLSQRIEPFDTTD---SL------------- 141 (241)
T ss_dssp HHHHHHHHHTCCEECTHHHHHHHHHTSCCCSGG-GBBEEEEETTTT--EEEECCCCCCCTTS---CH-------------
T ss_pred HHHHHHHHcCCCEecHHHHHHHHHcCCcCChhh-ccCCCCcchhcc--chhhccccCCChhh---HH-------------
Confidence 7888887776 9999999999999999999998 566544322110 00000000111000 01
Q ss_pred chhHHHhhhcCCCCCCCcCCCeEEEEcCCCCCCCC---chHHHHHHHHHHHHHHHHhcCCEE--EccCC-CceEEEEecc
Q 001089 785 KTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSP---DWEVLLGLALRRLKLEISFHGGKV--CNNLA-NATHVVVLSV 858 (1159)
Q Consensus 785 ~~i~~l~~~~~~~~~~~lF~gc~~yl~~~~~~~~~---d~~~i~~~~~~~l~~~I~~~GG~v--~~~ls-~vTHVIV~~~ 858 (1159)
++.+. .+..||.|++|||......... +.+ -.+..++.+..+++++||++ +..++ ..+|+|+.+.
T Consensus 142 --~~~~~------~~~~Lf~g~~i~~~~~~~~~~~~~~~~~-~~g~~~~~~~~i~~~~Ga~~~~v~~~~~~~~d~v~~~~ 212 (241)
T 2vxb_A 142 --YDRLL------ARKGPLFGKKILFIIPEAKSWQKKIENT-EQGQKALAHVYHALALGADVEIRPNVAHLECDLILTMD 212 (241)
T ss_dssp --HHHHH------HCCCTTTTCEEEECCCC-------------CHHHHHHHHHHHHHTTCEEECCSCCSSCCCSEEECSS
T ss_pred --HHHHh------hcCcCCCCcEEEEEeCCCcccccccccc-cccchHHHHHHHHHHcCCceecccccccCCccEEEECC
Confidence 11111 2356899999999764210000 000 00112468889999999999 54454 3678888642
Q ss_pred CCcccchhhHHHHHHHHhhhhccCCccEEecccHHHHHHHcCCccC
Q 001089 859 LGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSE 904 (1159)
Q Consensus 859 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~IVs~~WL~~ci~~g~~v~ 904 (1159)
. . . .....++||+++||.+|+..|++++
T Consensus 213 ~--~--~--------------~~~~~~~iV~~eWv~~~i~~g~~l~ 240 (241)
T 2vxb_A 213 G--N--I--------------VDETNCPVVDPEWIVECLISQSDIS 240 (241)
T ss_dssp S--C--C--------------CSSCSSCEECHHHHHHHHHHTSCTT
T ss_pred c--c--c--------------cccCCCCEecHHHHHHHHHhceecC
Confidence 1 1 0 1246799999999999999999886
No 22
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=99.71 E-value=2.8e-17 Score=174.66 Aligned_cols=181 Identities=16% Similarity=0.237 Sum_probs=129.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHcCC-EEEecCCCCceEEEEec-CCChhhHhHhcCC-CeeecchHHHHHhcCccCCCCcc
Q 001089 662 FYFVNVPPAYSLDSLHKMVVENGG-TFSMNLNNSVTHCVAAD-NKGLKYEAAKRRG-DVIHYSWVLDCCSQKKLLQLQPK 738 (1159)
Q Consensus 662 F~vv~~~~~~~k~eLe~lI~~~GG-~iv~n~~~~~Th~Ia~~-~~~~k~~~a~~~~-~VV~p~WV~dCi~~~~lLp~~p~ 738 (1159)
|+. ++.+...+++|.++|..+|| .++.+++..+||+|+.. ..|.||..++..+ .||+++||.+|++.|+.+|.++|
T Consensus 14 ~~~-sgl~~~~~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~~~rT~K~l~ai~~g~~Iv~~~Wv~~~~~~g~~l~e~~y 92 (199)
T 3u3z_A 14 LVM-TSMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWSLELGHWISEEPF 92 (199)
T ss_dssp EEE-ESCCHHHHHHHHHHHHHHCSCEEESSCCTTEEEEEESSCCCBHHHHHHHHTTCEEEETHHHHHHHHHTSCCCSGGG
T ss_pred EEE-cCCCHHHHHHHHHHHHHcCCcEEecCCCCCCeEEEECCCCCCHHHHHHHHCCCcEEeHHHHHHHhhCCCCCChhhc
Confidence 444 34445678899999999998 56688888899999976 3789999988888 99999999999999999999876
Q ss_pred cccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhHHHhhhcCCCCCCCcCCCe-EEEEcCCCCCC
Q 001089 739 YYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGC-CIYFYHSTEPL 817 (1159)
Q Consensus 739 ~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~~~s~~~~~i~~l~~~~~~~~~~~lF~gc-~~yl~~~~~~~ 817 (1159)
.+-....+.. ...+...+ ........||.|| .||+.++..
T Consensus 93 ~~~~~~~~~~-------------------~~rl~r~~------------------~~~~~~~~LF~g~~~~~v~~~~~-- 133 (199)
T 3u3z_A 93 ELSHHFPAAP-------------------LCRSECHL------------------SAGPYRGTLFADQPVMFVSPASS-- 133 (199)
T ss_dssp BCTTTCTHHH-------------------HHHHHHHH------------------CSSSCCCCTTTTSCCEEECTTCS--
T ss_pred cccCCccccc-------------------cchhhhhh------------------hcccccchhhCCCeEEEECCCCC--
Confidence 3332111000 00111100 0001234799999 577776543
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCEEEccCCCceEEEEeccCCcccchhhHHHHHHHHhhhhccCCccEEecccHHHHHH
Q 001089 818 SPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCL 897 (1159)
Q Consensus 818 ~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~vTHVIV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~IVs~~WL~~ci 897 (1159)
.. .+.|..+|+.+||+++..+..++++|... . . + ......+|+++||.+||
T Consensus 134 -~~--------~~~L~~lI~~~GG~v~~~~~~~~iiI~~~-~--~---~--------------~~~~~~~V~p~Wi~DsI 184 (199)
T 3u3z_A 134 -PP--------VAKLCELVHLCGGRVSQVPRQASIVIGPY-S--G---K--------------KKATVKYLSEKWVLDSI 184 (199)
T ss_dssp -SC--------HHHHHHHHHHTTCCBCSSGGGCSEEESCC-C--S---C--------------CCTTCEEECHHHHHHHH
T ss_pred -CC--------HHHHHHHHHHcCCEEeccCCCCEEEEeCC-c--h---h--------------ccCCCcEEChhHHHHHH
Confidence 12 35789999999999999997776655321 1 0 0 12456899999999999
Q ss_pred HcCCccCCCCCCCC
Q 001089 898 AKEQKSEEYEYSLK 911 (1159)
Q Consensus 898 ~~g~~v~E~~Y~v~ 911 (1159)
.+++++|.++|.+.
T Consensus 185 ~~~~llp~~~Y~~~ 198 (199)
T 3u3z_A 185 TQHKVCAPENYLLS 198 (199)
T ss_dssp HHTSCCCGGGGBCC
T ss_pred HcCCcCChHhccCC
Confidence 99999999999875
No 23
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=99.70 E-value=1.3e-16 Score=170.84 Aligned_cols=180 Identities=17% Similarity=0.203 Sum_probs=129.1
Q ss_pred CeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEec---CCChhhHhHhcCC-CeeecchHHHHHhcCccCC
Q 001089 659 DMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAAD---NKGLKYEAAKRRG-DVIHYSWVLDCCSQKKLLQ 734 (1159)
Q Consensus 659 G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~~~~~Th~Ia~~---~~~~k~~~a~~~~-~VV~p~WV~dCi~~~~lLp 734 (1159)
++.||+. +.....+..|.+++..+||+++.+++..+||+|+.. ..+.||..+...+ .||+++||.+|+++|+.+|
T Consensus 2 ~~vi~~s-g~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlV~~~~~~~rt~K~l~a~~~g~~IV~~~Wl~~c~~~~~~~~ 80 (210)
T 2nte_A 2 PLVLIGS-GLSSEQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRRKVCEQ 80 (210)
T ss_dssp CCEEEES-SCCHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESSSSCCCSHHHHHHHHTTCEEEETHHHHHHHHHTSCCC
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHHcCCEEeCCCCCCCeEEEEcCCCcchHHHHHHHHhcCCEEecHHHHHHHHHcCCcCC
Confidence 5677764 444456889999999999999999888899999976 5788988887777 9999999999999999999
Q ss_pred CCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhHHHhhhcCCCCCCCcCCCeEEEEcCCC
Q 001089 735 LQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHST 814 (1159)
Q Consensus 735 ~~p~~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~~~s~~~~~i~~l~~~~~~~~~~~lF~gc~~yl~~~~ 814 (1159)
.++|.+-. .+ .+.-+.. .+ ....+|.||.|||.+..
T Consensus 81 e~~y~~~~-~~-------------------------~~~r~~~--------------~~----~~~~lF~g~~~~l~~~~ 116 (210)
T 2nte_A 81 EEKYEIPE-GP-------------------------RRSRLNR--------------EQ----LLPKLFDGCYFYLWGTF 116 (210)
T ss_dssp GGGTBCTT-HH-------------------------HHHHHHH--------------HT----TCCCTTTTCEEEECSCC
T ss_pred hhhccCCC-CC-------------------------hhhhhcc--------------cc----ccccccCceEEEEeccC
Confidence 88753321 00 0000000 00 12468999999999732
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhcCCEEEccC------------------------CCceEEEEeccCCcccchhhHHH
Q 001089 815 EPLSPDWEVLLGLALRRLKLEISFHGGKVCNNL------------------------ANATHVVVLSVLGYDVNFNSLTE 870 (1159)
Q Consensus 815 ~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~l------------------------s~vTHVIV~~~~~~~~~~~~l~~ 870 (1159)
. ... .+.|..+|+.+||+++... ..|||.||..+... .....
T Consensus 117 ~--~~~--------~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~~~-~~~~~--- 182 (210)
T 2nte_A 117 K--HHP--------KDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDLCN-YHPER--- 182 (210)
T ss_dssp S--SSC--------HHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSCSS-CCCSC---
T ss_pred C--CCC--------HHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEeccccc-cCHHH---
Confidence 1 112 4678999999999998621 13789988764311 00000
Q ss_pred HHHHHhhhhccCCccEEecccHHHHHHHcCCccCCC
Q 001089 871 SFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEY 906 (1159)
Q Consensus 871 ~l~~~~~~~~~~~~~~IVs~~WL~~ci~~g~~v~E~ 906 (1159)
....++++|+++||.+||..++++|.+
T Consensus 183 ---------~~~~~v~~V~~~Wl~dcI~~~~llp~~ 209 (210)
T 2nte_A 183 ---------VRQGKVWKAPSSWFIDCVMSFELLPLD 209 (210)
T ss_dssp ---------SEETTEEEEEHHHHHHHHHHTSCCCSC
T ss_pred ---------HhccCcccccHHHHHHHHHhCeeccCC
Confidence 013567899999999999999999865
No 24
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=99.67 E-value=2.5e-16 Score=168.72 Aligned_cols=194 Identities=18% Similarity=0.269 Sum_probs=133.1
Q ss_pred CcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecC-CChhhHhHhcCC-CeeecchHHHHHhcCcc
Q 001089 655 SIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADN-KGLKYEAAKRRG-DVIHYSWVLDCCSQKKL 732 (1159)
Q Consensus 655 ~lF~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~~~~~Th~Ia~~~-~~~k~~~a~~~~-~VV~p~WV~dCi~~~~l 732 (1159)
....++.||+.+.. .++++++|..+||.++.+++. +||+|+... .|.||..++..+ +||+|+||.+|++++++
T Consensus 8 ~~~~~~~v~~sG~~----~~~~~~~i~~lGg~~~~~~~~-~THlI~~~~~rt~K~l~a~~~g~~IV~~~Wl~~~~~~~~~ 82 (209)
T 2etx_A 8 QESTAPKVLFTGVV----DARGERAVLALGGSLAGSAAE-ASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGFF 82 (209)
T ss_dssp ----CCEEEECSSC----CHHHHHHHHHTTCEECSSTTT-CSEEECSSCCCSHHHHHHHHHTCCEECTHHHHHHHHHTSC
T ss_pred ccCCCcEEEEeCCC----cHHHHHHHHHCCCEEeCCCCC-ceEEEECCCCCCHHHHHHHhcCCccccHHHHHHHHHcCCC
Confidence 34556677764332 256799999999999999874 999997643 688998888887 99999999999999999
Q ss_pred CCCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhHHHhhhcCCCCCCCcCCCeEEEEcC
Q 001089 733 LQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYH 812 (1159)
Q Consensus 733 Lp~~p~~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~~~s~~~~~i~~l~~~~~~~~~~~lF~gc~~yl~~ 812 (1159)
+|.++| ++. .+..... ||- + +...+.+. + ...+|.|+.||+..
T Consensus 83 l~e~~y-~~~-~~~~~~~-------~~~------~---l~~~~~~a------------~-------~~~lF~g~~~~~~~ 125 (209)
T 2etx_A 83 LPPDEY-VVT-DPEQEKN-------FGF------S---LQDALSRA------------R-------ERRLLEGYEIYVTP 125 (209)
T ss_dssp CCSGGG-BCC-CHHHHHH-------TTC------C---HHHHHHHH------------H-------HSCTTTTCEEEECT
T ss_pred CChhhc-ccc-Chhhhhh-------cCC------C---HHHHHhhh------------h-------hCCCcCCcEEEEeC
Confidence 999874 442 2211111 111 1 12111110 0 12689999999997
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCCC---ceEEEEeccCCcccchhhHHHHHHHHhhhhccCCccEEec
Q 001089 813 STEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN---ATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVR 889 (1159)
Q Consensus 813 ~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~---vTHVIV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~IVs 889 (1159)
+.. +. .+.|..+|+.+||++...+.. -+|||+.... +...++... ...++||+
T Consensus 126 ~~~---~~--------~~~l~~li~~~GG~v~~~~~~~~~~~~ivI~~~~----d~~~~~~~~---------~~~i~vvs 181 (209)
T 2etx_A 126 GVQ---PP--------PPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQ----DFPHCSIPL---------RVGLPLLS 181 (209)
T ss_dssp TCS---SC--------HHHHHHHHHHTTCEECSSCCCSCCTTEEEECCGG----GGGGCHHHH---------HHTCCEEC
T ss_pred CCC---CC--------HHHHHHHHHHCCCEEECCCCCCCCCceEEEECcc----cHHHHHHHH---------HCCCeEEc
Confidence 642 12 357789999999999998864 3788885432 222222211 13578999
Q ss_pred ccHHHHHHHcCCccCCCCCCCCCCCC
Q 001089 890 SQWLEDCLAKEQKSEEYEYSLKPTGM 915 (1159)
Q Consensus 890 ~~WL~~ci~~g~~v~E~~Y~v~~~~~ 915 (1159)
.+||.+||..+++ +++.|.+.++.+
T Consensus 182 ~eWi~~sI~~q~l-d~e~y~l~~~~~ 206 (209)
T 2etx_A 182 PEFLLTGVLKQEA-KPEAFVLSPLEM 206 (209)
T ss_dssp THHHHHHHHHTCC-CGGGGBCCTTC-
T ss_pred HHHHHHHHHhccc-ChHHheecCCCc
Confidence 9999999998764 999999987763
No 25
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.52 E-value=2e-14 Score=134.95 Aligned_cols=88 Identities=24% Similarity=0.416 Sum_probs=74.8
Q ss_pred CCCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCC-CCceEEEEecCCChhhHhHhcCCCeeecchHHHHHhcC
Q 001089 652 GETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLN-NSVTHCVAADNKGLKYEAAKRRGDVIHYSWVLDCCSQK 730 (1159)
Q Consensus 652 ~~s~lF~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~~-~~~Th~Ia~~~~~~k~~~a~~~~~VV~p~WV~dCi~~~ 730 (1159)
..+.+|+|+.||+ ++....++++|+++|.+|||+++.+.+ ..+||+|+....+.|++.+. ..+||+|+||+||+++|
T Consensus 8 ~~~~lF~g~~~~i-sg~~~~~~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~~~-~~~iV~p~Wl~dci~~~ 85 (97)
T 2ebw_A 8 TSSTIFSGVAIYV-NGYTDPSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAG 85 (97)
T ss_dssp CCCCTTTTCEEEE-CSSCSSCHHHHHHHHHHTTCEECSSCCSSSCCEEECSCCCTTHHHHTS-SSCCBCTHHHHHHHHHT
T ss_pred CCCCCCCCeEEEE-eCCCcccHHHHHHHHHHcCCEEeeecCCCCCEEEEecCCChHHHHHhc-CCCEeChHHHHHHHHcC
Confidence 4578999999996 555566799999999999999987665 47999998777678888775 44999999999999999
Q ss_pred ccCCCCccccc
Q 001089 731 KLLQLQPKYYL 741 (1159)
Q Consensus 731 ~lLp~~p~~~l 741 (1159)
+++|++||+++
T Consensus 86 ~~l~~~~Y~l~ 96 (97)
T 2ebw_A 86 RLLSYIPYQLY 96 (97)
T ss_dssp SCCCSGGGBSC
T ss_pred CccCchHcEec
Confidence 99999998654
No 26
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=99.46 E-value=3.2e-13 Score=145.46 Aligned_cols=191 Identities=16% Similarity=0.223 Sum_probs=129.2
Q ss_pred cccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecC-CChhhHhHhcCC-CeeecchHHHHHhcCccC
Q 001089 656 IFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADN-KGLKYEAAKRRG-DVIHYSWVLDCCSQKKLL 733 (1159)
Q Consensus 656 lF~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~~~~~Th~Ia~~~-~~~k~~~a~~~~-~VV~p~WV~dCi~~~~lL 733 (1159)
...|+.||+.+ .....++++.++|..+||+++.+. ..+||+|+... .+.||..+...+ +||+|+||.+|+++|+.+
T Consensus 13 ~~~~~~i~~SG-~~~~~~~~l~~~i~~lGg~v~~~~-~~~THLI~~~~~rT~K~l~A~~~g~~IVs~~Wl~~c~~~~~~l 90 (219)
T 3sqd_A 13 PELTPFVLFTG-FEPVQVQQYIKKLYILGGEVAESA-QKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQKFI 90 (219)
T ss_dssp GGGCCEEEECS-CCHHHHHHHHHHHHHTTCEECSSG-GGCSEEECSSCCCCHHHHHHTTTCSEEECHHHHHHHHHHTSCC
T ss_pred CCCCeEEEEeC-CChHHHHHHHHHHHHCCCEEeCCC-CCceEEEECCCCCCHHHHHHHHcCCCEecHHHHHHHHHcCCCC
Confidence 46778888764 434456789999999999998876 57999998653 578999998888 999999999999999999
Q ss_pred CCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhHHHhhhcCCCCCCCcCCCeEEEEcCC
Q 001089 734 QLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHS 813 (1159)
Q Consensus 734 p~~p~~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~~~s~~~~~i~~l~~~~~~~~~~~lF~gc~~yl~~~ 813 (1159)
|.++| .+...+ . + ..||-+ +...+.+ - ....||.|+.||+.+.
T Consensus 91 ~e~~y-~l~d~~-~-e------~~~~~~---------l~~~l~r------------a-------~~~~LF~G~~f~it~~ 133 (219)
T 3sqd_A 91 DEQNY-ILRDAE-A-E------VLFSFS---------LEESLKR------------A-------HVSPLFKAKYFYITPG 133 (219)
T ss_dssp CSGGG-BCCCHH-H-H------HHTTCC---------HHHHHHH------------H-------HHSCTTTTEEEEECTT
T ss_pred ChHhc-cCCCch-h-h------hhcCCC---------hHHHhhh------------h-------ccccccCCcEEEEeCC
Confidence 98875 332211 0 0 011111 1111100 0 0235899999999985
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCCC-------------ceEEEEeccCCcccchhhHHHHHHHHhhhhc
Q 001089 814 TEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN-------------ATHVVVLSVLGYDVNFNSLTESFTAREKHLL 880 (1159)
Q Consensus 814 ~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~-------------vTHVIV~~~~~~~~~~~~l~~~l~~~~~~~~ 880 (1159)
.. .. .+.+..+|+.+||++...+.. ...||+.... +....+...
T Consensus 134 ~~---~~--------~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~~~~~~ivis~~~----d~~~~~~~~-------- 190 (219)
T 3sqd_A 134 IC---PS--------LSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISCEN----DLHLCREYF-------- 190 (219)
T ss_dssp CS---SC--------HHHHHHHHHHTTCEEESSCCCHHHHHHHHHCTTSCEEEEEECGG----GGGGGHHHH--------
T ss_pred CC---CC--------HHHHHHHHHHCCCEEECCCCchHHhhhhhcccCCCCEEEEeccc----HHHHHHHHH--------
Confidence 42 22 357899999999999998752 2345554322 223223222
Q ss_pred cCCccEEecccHHHHHHHcCCccCCCCCCC
Q 001089 881 WNKKLHVVRSQWLEDCLAKEQKSEEYEYSL 910 (1159)
Q Consensus 881 ~~~~~~IVs~~WL~~ci~~g~~v~E~~Y~v 910 (1159)
...+.|++.+||..||-.+. ++-+.|.+
T Consensus 191 -~~~~~v~s~E~il~~Il~q~-ld~~~~~~ 218 (219)
T 3sqd_A 191 -ARGIDVHNAEFVLTGVLTQT-LDYESYKF 218 (219)
T ss_dssp -HTTCCCEETHHHHHHHHHTC-CCTTTSBC
T ss_pred -HCCCcEEeHHHHHHHHHhee-ecchhccc
Confidence 13568999999999999755 46666654
No 27
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=99.46 E-value=2e-13 Score=148.60 Aligned_cols=211 Identities=15% Similarity=0.143 Sum_probs=134.3
Q ss_pred cCeEEEEEcCCCCCChHHHHHHHHHcCCEEEe--cCCCCceEEEEecC-CChhhHhHhcCC-CeeecchHHHHHhcCccC
Q 001089 658 SDMVFYFVNVPPAYSLDSLHKMVVENGGTFSM--NLNNSVTHCVAADN-KGLKYEAAKRRG-DVIHYSWVLDCCSQKKLL 733 (1159)
Q Consensus 658 ~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~--n~~~~~Th~Ia~~~-~~~k~~~a~~~~-~VV~p~WV~dCi~~~~lL 733 (1159)
+++.|++.+ .....+.++.++|.++||+++. +++..+||+|+... .|.||-.++..| .||+++||.+|+++|+.+
T Consensus 8 ~~~~~~~Sg-~~~~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~RT~K~l~aia~G~wIvs~~wl~~s~~~g~~l 86 (235)
T 3al2_A 8 KQYIFQLSS-LNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRTAGHFV 86 (235)
T ss_dssp CCCEEEEES-CCHHHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCCCSHHHHHHHHTTCEEECTHHHHHHHHHTSCC
T ss_pred CCEEEEEcC-CCHHHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCCCCHHHHHHHHcCCcCccHHHHHHHHHcCCCC
Confidence 566788754 3345678899999999999986 35668999998765 589998888888 999999999999999999
Q ss_pred CCCcccccccChhhhhhhhhcccccCCCcccCCChh--HHHHHhhccCCCCCcchhHHHhhhcCCCCCCCcCCCeEEEEc
Q 001089 734 QLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLA--DIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFY 811 (1159)
Q Consensus 734 p~~p~~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~--~L~~ll~~~~~s~~~~~i~~l~~~~~~~~~~~lF~gc~~yl~ 811 (1159)
|.++|.+.. .. .... . ..++.. .+.....+- . ..+...-.......+|.|+.|||+
T Consensus 87 ~E~~ye~~~-~~-~~d~----~--------~~~~~~~~~l~~a~~r~-------R-~~l~~~~~~g~~~~lF~g~~v~l~ 144 (235)
T 3al2_A 87 QEEDYEWGS-SS-ILDV----L--------TGINVQQRRLALAAMRW-------R-KKIQQRQESGIVEGAFSGWKVILH 144 (235)
T ss_dssp CSGGGBTTS-HH-HHTT----C--------TTSCHHHHHHHHHHHHH-------H-HHHHHHHTTTCCSSTTTTCEEEEE
T ss_pred ChhceeecC-cc-hhcc----c--------cCCChhhhHHHHHHHHH-------H-HHHHhcccccccCCCCCCcEEEEe
Confidence 988753321 10 0000 0 001111 111100000 0 000000000001368999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-----CceEEEEeccCCcccch-hhHHHHHHHHhhhhccCCcc
Q 001089 812 HSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-----NATHVVVLSVLGYDVNF-NSLTESFTAREKHLLWNKKL 885 (1159)
Q Consensus 812 ~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-----~vTHVIV~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~ 885 (1159)
... ...+.++++|+++||+|..... +.||++|....-...+. ..++. + ....+
T Consensus 145 ~~~------------~~~~~l~~ii~agGg~vl~~~~~~~~~~~t~~~vd~~~~~~~~~~~~~~~-~--------~~~~i 203 (235)
T 3al2_A 145 VDQ------------SREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAE-A--------AAQNV 203 (235)
T ss_dssp CCH------------HHHHHHHHHHHHTTCEECSSCCGGGGGGCSEEEECC--------CCCHHH-H--------HHTTC
T ss_pred cCC------------CcHHHHHHHHHcCCcEEecCCCCCccccCceEEEecccCCccchhHHHHH-H--------HHcCC
Confidence 731 1246789999999999987643 37999886321000000 01111 1 12348
Q ss_pred EEecccHHHHHHHcCCccCCCCCCCCC
Q 001089 886 HVVRSQWLEDCLAKEQKSEEYEYSLKP 912 (1159)
Q Consensus 886 ~IVs~~WL~~ci~~g~~v~E~~Y~v~~ 912 (1159)
.||+.+||.+|+-.+...+.+.|.++.
T Consensus 204 ~~v~~ewlld~i~~~~~~~~~~y~l~~ 230 (235)
T 3al2_A 204 YCLRTEYIADYLMQESPPHVENYCLPE 230 (235)
T ss_dssp EEEETHHHHHHHHCSSCCCHHHHBCGG
T ss_pred cEEcHHHHHHHHhcCCCCChhheEccc
Confidence 999999999999999999999997764
No 28
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.44 E-value=1.9e-13 Score=135.73 Aligned_cols=93 Identities=28% Similarity=0.389 Sum_probs=73.0
Q ss_pred CCCCCcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEeccCCcccchhhHHHHHHHH
Q 001089 797 QDKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAR 875 (1159)
Q Consensus 797 ~~~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVIV~~~~~~~~~~~~l~~~l~~~ 875 (1159)
..+..+|+||+|||+++.. ...+.|..+|+.+||++++.++ .|||||+.... . .+++.+..
T Consensus 35 ~~~~~lF~g~~i~i~G~~~-----------~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~~---~---~~~~~~~~- 96 (132)
T 1wf6_A 35 QAPEDLLDGCRIYLCGFSG-----------RKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYD---D---ELKQFWNK- 96 (132)
T ss_dssp CCCTTTTTTCEEEEESCCS-----------HHHHHHHHHHHHTTCEEESSCCSSCCEEEESSCC---S---HHHHHHHH-
T ss_pred cccccccCCEEEEEECCCh-----------HHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCch---H---HHHHHHHh-
Confidence 4567899999999999752 2357899999999999999997 69999997532 1 22222211
Q ss_pred hhhhccCCccEEecccHHHHHHHcCCccCCCCCCCCC
Q 001089 876 EKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKP 912 (1159)
Q Consensus 876 ~~~~~~~~~~~IVs~~WL~~ci~~g~~v~E~~Y~v~~ 912 (1159)
....++||+++||++|+++++++||+.|.+..
T Consensus 97 -----~~~~~~iV~~~Wv~dsi~~~~ll~e~~Y~~~~ 128 (132)
T 1wf6_A 97 -----SAHRPHVVGAKWLLECFSKGYMLSEEPYIHSG 128 (132)
T ss_dssp -----SCCCCCEEEHHHHHHHHHHSSCCCSGGGBCCC
T ss_pred -----hCCCCeEechHHHHHHHHcCCcCCHhhccCCC
Confidence 13568999999999999999999999997654
No 29
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=4.4e-13 Score=124.15 Aligned_cols=85 Identities=28% Similarity=0.376 Sum_probs=69.2
Q ss_pred CCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCC--CCceEEEEecCCChhhHhHhcCCCeeecchHHHHHhcC
Q 001089 653 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLN--NSVTHCVAADNKGLKYEAAKRRGDVIHYSWVLDCCSQK 730 (1159)
Q Consensus 653 ~s~lF~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~~--~~~Th~Ia~~~~~~k~~~a~~~~~VV~p~WV~dCi~~~ 730 (1159)
.+.+|+|+.|||.+ ....++.+|+++|..|||+++.+++ ..+||+|+....+.|+..+ ...+||+|+||+||++++
T Consensus 4 ~~~~f~g~~~~i~g-~~~~~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~~K~~~~-~~~~iV~~~Wi~dci~~~ 81 (92)
T 4id3_A 4 SSKIFKNCVIYING-YTKPGRLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPLKKRIEF-ANYKVVSPDWIVDSVKEA 81 (92)
T ss_dssp --CTTTTCEEEECS-CCSSCHHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCHHHHHHT-TTSCEECTHHHHHHHHHT
T ss_pred cccccCCEEEEEeC-CCCcCHHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCHHHHHHc-CCCCEEcccHHHHHHHcC
Confidence 46899999999854 3345799999999999999999887 6899999877666564433 223999999999999999
Q ss_pred ccCCCCccc
Q 001089 731 KLLQLQPKY 739 (1159)
Q Consensus 731 ~lLp~~p~~ 739 (1159)
+++|+++|.
T Consensus 82 ~~l~e~~Y~ 90 (92)
T 4id3_A 82 RLLPWQNYS 90 (92)
T ss_dssp SCCCGGGGB
T ss_pred CcCChhhcc
Confidence 999999863
No 30
>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5}
Probab=99.36 E-value=7e-12 Score=145.27 Aligned_cols=155 Identities=18% Similarity=0.221 Sum_probs=110.2
Q ss_pred CCcEEEEEecceEEEEEEEeCCEEEEEecCCCC--cCc-chhh-HHHHHHHhcccCceeecceEEEEeCCCCcccccccH
Q 001089 244 GKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLD--HSE-YGHA-MSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSN 319 (1159)
Q Consensus 244 ~~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d--~t~-~~p~-l~~~l~~~~~~~~~ILDGElv~~d~~~~~~~pFg~l 319 (1159)
...|++|+|+||.|+++|+.+|.++++||++.. +|. .+|. +...+... ...++||||++.++. +|...
T Consensus 94 ~~~~vvEeKlDG~~v~l~y~~G~v~a~TRg~g~e~iT~n~i~~wip~~L~~~--~~~l~L~GEvv~~~~------~f~~~ 165 (389)
T 2vug_A 94 RGEFYVEEKVDGYNVRVVMYKGKMLGITRGGFICPFTTERIPDFVPQEFFKD--NPNLILVGEMAGPES------PYLVE 165 (389)
T ss_dssp SCEEEEEEECCSEEEEEEEETTEEEEEETTSCBCHHHHHHGGGTSCTHHHHH--CTTEEEEEEEESSSC------SSCSC
T ss_pred CCeEEEEEeecCcEEEEEEECCEEEEEeCCCCCCCCchhhhhHhHHHHHhcC--CCcEEEEEEEEecCC------hHHHh
Confidence 357999999999999999999999999999988 543 3344 22222211 567999999987642 44211
Q ss_pred HHHHHHhhcCCC-CCCCeEEEEEeeeecCCccccCCCHHHHHHHHHHhhccCCCcceeeccCCCCCccccCCCCCcccee
Q 001089 320 QEIAKAARDGLS-SDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLV 398 (1159)
Q Consensus 320 q~i~~~~r~~~~-~~~~~~~~vFDiL~lnG~~l~~~pl~eRr~~L~~~i~~~~~~~~i~~p~~~~~~~v~~~~~~~~~~~ 398 (1159)
+.. ...++.|++|||++.++... .|+.+|+++|+++--+....+. ...
T Consensus 166 ---------n~~np~r~l~F~vFDV~~~~~g~~--~s~~er~~~L~~lG~~~vp~~~--------------------~~~ 214 (389)
T 2vug_A 166 ---------GPPYVKEDIQFFLFDVQEIKTGRS--LPVEERLKIAEEYGINHVEVFG--------------------KYT 214 (389)
T ss_dssp ---------CCTTCCSSCEEEEEEEEETTTCCB--CCHHHHHHHHHHHTCCBCCEEE--------------------EEE
T ss_pred ---------cccCcccCCEEEEEEeeccCCCCc--CCHHHHHHHHHHcCCCCCCeEE--------------------EEc
Confidence 111 25689999999998863332 7899999999987332211110 112
Q ss_pred cCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEcccc
Q 001089 399 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEY 445 (1159)
Q Consensus 399 ~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKiKpey 445 (1159)
..+.+++.++++.+...+.||||+|..+ +. .|+|++..+
T Consensus 215 ~~~~eel~~~i~~~~~~~~EGvViK~~d-------~~-~~lkyt~~~ 253 (389)
T 2vug_A 215 KDDVDELYQLIERLSKEGREGIIMKSPD-------MK-KIVKYVTPY 253 (389)
T ss_dssp GGGHHHHHHHHHHHHHTTCCEEEEECTT-------SC-CEEEEECHH
T ss_pred CCCHHHHHHHHHHhcCCCCCeEEEEECC-------hh-hhcCceecC
Confidence 2367899999999999999999999876 33 688887765
No 31
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.7e-12 Score=128.26 Aligned_cols=91 Identities=20% Similarity=0.289 Sum_probs=79.5
Q ss_pred CCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhHhcCC-CeeecchHHHHHhcCc
Q 001089 653 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKK 731 (1159)
Q Consensus 653 ~s~lF~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~~~~~Th~Ia~~~~~~k~~~a~~~~-~VV~p~WV~dCi~~~~ 731 (1159)
.+.+|.|+.|||.+.. ..++.+|+++|..|||++..+++..+||+|+....+.||..|..++ +||+++||.||+++++
T Consensus 19 ~~~~f~g~~i~itG~~-~~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~~K~~~A~~~gi~IV~~~Wl~d~~~~~~ 97 (129)
T 2d8m_A 19 LGKILQGVVVVLSGFQ-NPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCHRMRR 97 (129)
T ss_dssp HTTTSTTEEEEEESCC-TTHHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSCHHHHHHHHHTCEEEETHHHHHHHHTTS
T ss_pred ccccCCCeEEEEeCCC-cHHHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCChHHHHHHHCCCcEecHHHHHHHHHhCC
Confidence 4568999999986544 6689999999999999999999888999999988899999998877 9999999999999999
Q ss_pred cCCCCcccccccCh
Q 001089 732 LLQLQPKYYLHLSD 745 (1159)
Q Consensus 732 lLp~~p~~~l~~s~ 745 (1159)
++|+.+| .+...+
T Consensus 98 ~l~e~~Y-~l~~~~ 110 (129)
T 2d8m_A 98 RLPSQRY-LMAGPG 110 (129)
T ss_dssp CCCGGGG-BCSSSS
T ss_pred cCChHhc-ccCCCC
Confidence 9999975 444433
No 32
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.7e-12 Score=122.24 Aligned_cols=81 Identities=19% Similarity=0.366 Sum_probs=64.0
Q ss_pred CCCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecC-----------CCCceEEEEecCCChhhHhHhcCCCeeec
Q 001089 652 GETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNL-----------NNSVTHCVAADNKGLKYEAAKRRGDVIHY 720 (1159)
Q Consensus 652 ~~s~lF~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~-----------~~~~Th~Ia~~~~~~k~~~a~~~~~VV~p 720 (1159)
+.++||+|+.|||.. ..+++.|+.+|+.|||+++++. ...+||+|+ ++.+.+... ...++|+|
T Consensus 8 ~~~~LF~g~~F~i~~---e~p~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~-drp~~~~~~--~~r~~VqP 81 (100)
T 2ep8_A 8 KHKKLFEGLKFFLNR---EVPREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIV-DRPGQQTSV--IGRCYVQP 81 (100)
T ss_dssp CSCCTTSSCEEECCS---SSCHHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEEC-SCTTTSCCB--TTBEEECT
T ss_pred chHHHcCCcEEEEec---CCCHHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEe-cccchhhhc--CCCeEEcc
Confidence 457899999999854 3579999999999999999873 346899986 443432111 11299999
Q ss_pred chHHHHHhcCccCCCCcc
Q 001089 721 SWVLDCCSQKKLLQLQPK 738 (1159)
Q Consensus 721 ~WV~dCi~~~~lLp~~p~ 738 (1159)
+||+||++++++||+++|
T Consensus 82 qWV~Dcin~~~lLp~~~Y 99 (100)
T 2ep8_A 82 QWVFDSVNARLLLPVAEY 99 (100)
T ss_dssp HHHHHHHHHTSCCCTTTC
T ss_pred hHHHHHHhcCCcCChhhc
Confidence 999999999999999985
No 33
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.32 E-value=2.3e-12 Score=123.71 Aligned_cols=91 Identities=20% Similarity=0.264 Sum_probs=73.1
Q ss_pred CCCcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEeccCCcccchhhHHHHHHHHhh
Q 001089 799 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREK 877 (1159)
Q Consensus 799 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVIV~~~~~~~~~~~~l~~~l~~~~~ 877 (1159)
+..+|.||+|||.||.. .++..|+..|..+||++...++ .|||+|+....+. .+..
T Consensus 18 ~~p~F~g~~Ic~sGf~~-----------~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~~--K~~~---------- 74 (112)
T 3l46_A 18 GVPPFQDCILSFLGFSD-----------EEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVK--DLPF---------- 74 (112)
T ss_dssp CCCTTTTCEECEESCCH-----------HHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTBS--SCSS----------
T ss_pred CCCccCCeEEEEeCCCH-----------HHHHHHHHHHHHcCCEECcccCCCceEEEecCCchh--hHHH----------
Confidence 45689999999999862 2467899999999999999998 6999999875422 1211
Q ss_pred hhccCCccEEecccHHHHHHHcCCccCCCCCCCCCCC
Q 001089 878 HLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTG 914 (1159)
Q Consensus 878 ~~~~~~~~~IVs~~WL~~ci~~g~~v~E~~Y~v~~~~ 914 (1159)
...+.++||+++||++||+.|.+++|..|.+..+.
T Consensus 75 --A~~~~i~IVs~eWl~dsi~~g~~ldE~~Y~~~~~~ 109 (112)
T 3l46_A 75 --EPSKKLYVVKQEWFWGSIQMDARAGETMYLYEKAN 109 (112)
T ss_dssp --CCCSSCEEEEHHHHHHHHHHTSCCCGGGSBCCC--
T ss_pred --HHHCCeeEecHHHHHHHHHcCCccChhhceeccCC
Confidence 12478999999999999999999999999996653
No 34
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.31 E-value=5e-12 Score=119.63 Aligned_cols=93 Identities=20% Similarity=0.342 Sum_probs=74.0
Q ss_pred CCcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEeccCCcccchhhHHHHHHHHhhh
Q 001089 800 WSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKH 878 (1159)
Q Consensus 800 ~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVIV~~~~~~~~~~~~l~~~l~~~~~~ 878 (1159)
..||+||+|||++..+ .. .+..+.++|.++||++.+.++ +|||||+..+.+. +++.++
T Consensus 5 pd~F~g~~f~l~~~~p--~~--------~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~~d~--~~~~a~--------- 63 (104)
T 3pc6_A 5 PDFFEGKHFFLYGEFP--GD--------ERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDP--NFEEAL--------- 63 (104)
T ss_dssp CCTTTTCEEEEESCCS--TT--------HHHHHHHHHHHTTCEECSSCCTTCCEEEESSCCCH--HHHHHH---------
T ss_pred chhhCCeEEEEcCCCc--HH--------HHHHHHHHHHHcCCEEEcccCCCceEEEeCCCCCh--hHHHHh---------
Confidence 3689999999999763 12 256889999999999999887 5999999876422 222111
Q ss_pred hccCCccEEecccHHHHHHHcCCccCCCCCCCCCCC
Q 001089 879 LLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTG 914 (1159)
Q Consensus 879 ~~~~~~~~IVs~~WL~~ci~~g~~v~E~~Y~v~~~~ 914 (1159)
..+..+.+|+++||++|++++++||+++|.+.+..
T Consensus 64 -~~~p~~~~V~P~WI~~Ci~~~klvp~~~y~~~~~~ 98 (104)
T 3pc6_A 64 -MENPSLAFVRPRWIYSCNEKQKLLPHQLYGVVPQA 98 (104)
T ss_dssp -TTCTTCEEECHHHHHHHHHHTSCCCGGGGBCCCCG
T ss_pred -hhCCCCeEEccHHHHHHHhcCccCCcccceecchh
Confidence 12467899999999999999999999999988765
No 35
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.30 E-value=2.9e-12 Score=122.98 Aligned_cols=90 Identities=19% Similarity=0.262 Sum_probs=72.1
Q ss_pred CCCcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEeccCCcccchhhHHHHHHHHhh
Q 001089 799 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREK 877 (1159)
Q Consensus 799 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVIV~~~~~~~~~~~~l~~~l~~~~~ 877 (1159)
+..+|.||+||+.++.. .++..|...|+.+||+++..++ +|||||+...... .+. .
T Consensus 9 ~~~~F~g~~i~~sg~~~-----------~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~~~--K~~---~------- 65 (109)
T 2cou_A 9 KVPPFQDCILSFLGFSD-----------EEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTVK--DLP---F------- 65 (109)
T ss_dssp CCCTTTTCBEEEESSCH-----------HHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTTCS--SCS---S-------
T ss_pred cCCcCCCeEEEecCCCH-----------HHHHHHHHHHHHcCCEEecccCCCccEEEEeCCccH--HHH---H-------
Confidence 45689999999999752 1356888999999999999887 6999999864321 121 1
Q ss_pred hhccCCccEEecccHHHHHHHcCCccCCCCCCCCCC
Q 001089 878 HLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPT 913 (1159)
Q Consensus 878 ~~~~~~~~~IVs~~WL~~ci~~g~~v~E~~Y~v~~~ 913 (1159)
.....++||+++||++|++.|++++|+.|.+...
T Consensus 66 --a~~~~i~IV~~~Wl~dsi~~g~~ldE~~Y~~~~~ 99 (109)
T 2cou_A 66 --EPSKKLFVVKQEWFWGSIQMDARAGETMYLYEKA 99 (109)
T ss_dssp --CCCTTSEEECHHHHHHHHHTTSCCCGGGTBCCCC
T ss_pred --HHHCCCeEecHHHHHHHHHcCCcCChhccCCCCC
Confidence 1246789999999999999999999999988763
No 36
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.29 E-value=4e-12 Score=120.28 Aligned_cols=88 Identities=19% Similarity=0.312 Sum_probs=74.7
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhHhcCC---CeeecchHHHHHhcC
Q 001089 654 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG---DVIHYSWVLDCCSQK 730 (1159)
Q Consensus 654 s~lF~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~~~~~Th~Ia~~~~~~k~~~a~~~~---~VV~p~WV~dCi~~~ 730 (1159)
-++|+|+.||+.+..+..++..|+++|..+||++....+.++||+|+....+.++..+.... .+|+|+||++|++++
T Consensus 5 pd~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~~d~~~~~a~~~~p~~~~V~P~WI~~Ci~~~ 84 (104)
T 3pc6_A 5 PDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEALMENPSLAFVRPRWIYSCNEKQ 84 (104)
T ss_dssp CCTTTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSSCCTTCCEEEESSCCCHHHHHHHTTCTTCEEECHHHHHHHHHHT
T ss_pred chhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEcccCCCceEEEeCCCCChhHHHHhhhCCCCeEEccHHHHHHHhcC
Confidence 46999999998765545678999999999999988877778999999877777887776543 899999999999999
Q ss_pred ccCCCCccccc
Q 001089 731 KLLQLQPKYYL 741 (1159)
Q Consensus 731 ~lLp~~p~~~l 741 (1159)
+++|+++|-+.
T Consensus 85 klvp~~~y~~~ 95 (104)
T 3pc6_A 85 KLLPHQLYGVV 95 (104)
T ss_dssp SCCCGGGGBCC
T ss_pred ccCCcccceec
Confidence 99999986443
No 37
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.28 E-value=2.9e-12 Score=122.47 Aligned_cols=89 Identities=18% Similarity=0.354 Sum_probs=74.8
Q ss_pred cCCCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEE---ecCCChhhHhHhcCC-CeeecchHHHH
Q 001089 651 KGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVA---ADNKGLKYEAAKRRG-DVIHYSWVLDC 726 (1159)
Q Consensus 651 ~~~s~lF~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~~~~~Th~Ia---~~~~~~k~~~a~~~~-~VV~p~WV~dC 726 (1159)
...+.+|.|+.|||.+.. ..++.+|+++|.++||++...++..+||+|+ ....+.||+.+...+ +||+++||.||
T Consensus 10 ~~~~~~l~g~~i~isg~~-~~~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~~Wl~~c 88 (107)
T 3l3e_A 10 EEAPKPLHKVVVCVSKKL-SKKQSELNGIAASLGADYRRSFDETVTHFIYQGRPNDTNREYKSVKERGVHIVSEHWLLDC 88 (107)
T ss_dssp ----CTTTTCEEEECGGG-GGGHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTCCCHHHHHHHHTTCEEECHHHHHHH
T ss_pred ccccCCCCCeEEEEeCCC-hHhHHHHHHHHHHcCCEEeccccCCceEEEecCCCCCCCHHHHHHHHCCCeEecHHHHHHH
Confidence 345789999999986544 3689999999999999999999888999998 344578999998887 99999999999
Q ss_pred HhcCccCCCCcccc
Q 001089 727 CSQKKLLQLQPKYY 740 (1159)
Q Consensus 727 i~~~~lLp~~p~~~ 740 (1159)
+++++.+|..+|.+
T Consensus 89 ~~~~~~l~e~~Y~~ 102 (107)
T 3l3e_A 89 AQECKHLPESLYPH 102 (107)
T ss_dssp HHHTSCCCGGGCCT
T ss_pred HHhCCCCchhhCCC
Confidence 99999999887643
No 38
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.26 E-value=9.8e-12 Score=115.03 Aligned_cols=85 Identities=27% Similarity=0.393 Sum_probs=67.0
Q ss_pred CCCcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC---CceEEEEeccCCcccchhhHHHHHHHH
Q 001089 799 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA---NATHVVVLSVLGYDVNFNSLTESFTAR 875 (1159)
Q Consensus 799 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls---~vTHVIV~~~~~~~~~~~~l~~~l~~~ 875 (1159)
+..+|+||+|||.++.. ++ ...++.+|..+||+++..++ +|||||+....+ ..+.
T Consensus 4 ~~~~f~g~~~~i~g~~~---~~--------~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~-----~K~~------ 61 (92)
T 4id3_A 4 SSKIFKNCVIYINGYTK---PG--------RLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPL-----KKRI------ 61 (92)
T ss_dssp --CTTTTCEEEECSCCS---SC--------HHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCH-----HHHH------
T ss_pred cccccCCEEEEEeCCCC---cC--------HHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCH-----HHHH------
Confidence 45689999999999753 12 35788999999999999996 599999976431 1111
Q ss_pred hhhhccCCccEEecccHHHHHHHcCCccCCCCCCC
Q 001089 876 EKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSL 910 (1159)
Q Consensus 876 ~~~~~~~~~~~IVs~~WL~~ci~~g~~v~E~~Y~v 910 (1159)
....++||+++||.+|+++++++||++|.+
T Consensus 62 -----~~~~~~iV~~~Wi~dci~~~~~l~e~~Y~l 91 (92)
T 4id3_A 62 -----EFANYKVVSPDWIVDSVKEARLLPWQNYSL 91 (92)
T ss_dssp -----HTTTSCEECTHHHHHHHHHTSCCCGGGGBC
T ss_pred -----HcCCCCEEcccHHHHHHHcCCcCChhhccc
Confidence 124689999999999999999999999986
No 39
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=99.25 E-value=1e-11 Score=118.44 Aligned_cols=95 Identities=13% Similarity=0.216 Sum_probs=72.3
Q ss_pred CCCcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEeccCCcccchhhHHHHHHHHhh
Q 001089 799 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREK 877 (1159)
Q Consensus 799 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVIV~~~~~~~~~~~~l~~~l~~~~~ 877 (1159)
..++|+||++|++.+.....++ ..+.+...++.+||++++.++ ++||||+.+..+. .+ +...
T Consensus 4 ~~p~f~g~vvyvd~~~~~g~~~-------~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~~~--~~---~~A~----- 66 (107)
T 3pa6_A 4 AAPILKDVVAYVEVWSSNGTEN-------YSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGYQS--TW---DKAQ----- 66 (107)
T ss_dssp CCCTTTTCEEEEEEBCTTSCCB-------CHHHHHHHHHHTTCEECSSCCTTCCEEEEESCCHH--HH---HHHH-----
T ss_pred cccccCCEEEEEeccCCCChhh-------HHHHHHHHHHHcCCEEecccCCCccEEEEeCCCCh--HH---HHHh-----
Confidence 3568999999999876322112 135788899999999999998 6999999864321 12 2211
Q ss_pred hhccCCccEEecccHHHHHHHcCCccCCCCCCCCCCC
Q 001089 878 HLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTG 914 (1159)
Q Consensus 878 ~~~~~~~~~IVs~~WL~~ci~~g~~v~E~~Y~v~~~~ 914 (1159)
...++||+++||++|++++++++|+.|++..+.
T Consensus 67 ----~~~i~iV~~~Wv~~C~~~~~~vdE~~Y~i~~~~ 99 (107)
T 3pa6_A 67 ----KRGVKLVSVLWVEKCRTAGAHIDESLFPAANMN 99 (107)
T ss_dssp ----HHTCEEECHHHHHHHHHHTSCCCGGGSBCCCTT
T ss_pred ----cCCCEEECHHHHHHHHHhCccCChhcccCCCCc
Confidence 135799999999999999999999999986664
No 40
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=2.6e-11 Score=117.19 Aligned_cols=96 Identities=16% Similarity=0.163 Sum_probs=73.7
Q ss_pred CCCCcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEeccCCcccchhhHHHHHHHHh
Q 001089 798 DKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTARE 876 (1159)
Q Consensus 798 ~~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVIV~~~~~~~~~~~~l~~~l~~~~ 876 (1159)
.+..+|+||++||..+.. ...+++.+.++++++||+|++.++ +|||||+.+. +..++.+++..
T Consensus 16 ~p~~~F~g~~iy~v~~~~---------g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve~~-----~~~e~~~~l~~-- 79 (120)
T 2coe_A 16 PQDIKFQDLVVFILEKKM---------GTTRRALLMELARRKGFRVENELSDSVTHIVAENN-----SGSDVLEWLQA-- 79 (120)
T ss_dssp SSCCSCTTCEEEEECTTT---------CHHHHHHHHHHHHHHTCEECSSCCTTCCEEEESSC-----CHHHHHHHHHH--
T ss_pred CcccccCCeEEEEeeccc---------chHHHHHHHHHHHHcCCEEeeccCCCcCEEEecCC-----CHHHHHHHHhc--
Confidence 467899999999987652 235688999999999999999998 5999999632 23445555521
Q ss_pred hhhccCCccEEecccHHHHHHHcCCccCCCCCC
Q 001089 877 KHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYS 909 (1159)
Q Consensus 877 ~~~~~~~~~~IVs~~WL~~ci~~g~~v~E~~Y~ 909 (1159)
.++.....++||+..||++||++|++|+|+.|.
T Consensus 80 ~~l~~~~~~~lv~i~Wl~esmk~g~lv~ee~~~ 112 (120)
T 2coe_A 80 QKVQVSSQPELLDVSWLIECIGAGKPVEMTGKH 112 (120)
T ss_dssp CCCCCSSCCEEEEHHHHHHHHHTTSCCCCSSSS
T ss_pred cccccccccEEeecHHHHHHHHcCCccCcccce
Confidence 111223468999999999999999999997664
No 41
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.22 E-value=5.1e-12 Score=121.29 Aligned_cols=85 Identities=14% Similarity=0.158 Sum_probs=75.3
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhHhcCC-CeeecchHHHHHhcCcc
Q 001089 654 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKKL 732 (1159)
Q Consensus 654 s~lF~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~~~~~Th~Ia~~~~~~k~~~a~~~~-~VV~p~WV~dCi~~~~l 732 (1159)
..+|.|+.||+.+ .....+.+|+++|.+|||+|...++..+||+|+....+.||+.+.+++ +||+++||.|||+.|..
T Consensus 19 ~p~F~g~~Ic~sG-f~~~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~~K~~~A~~~~i~IVs~eWl~dsi~~g~~ 97 (112)
T 3l46_A 19 VPPFQDCILSFLG-FSDEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVKDLPFEPSKKLYVVKQEWFWGSIQMDAR 97 (112)
T ss_dssp CCTTTTCEECEES-CCHHHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTBSSCSSCCCSSCEEEEHHHHHHHHHHTSC
T ss_pred CCccCCeEEEEeC-CCHHHHHHHHHHHHHcCCEECcccCCCceEEEecCCchhhHHHHHHCCeeEecHHHHHHHHHcCCc
Confidence 4699999999965 445679999999999999999988888999999887777898888887 99999999999999999
Q ss_pred CCCCccc
Q 001089 733 LQLQPKY 739 (1159)
Q Consensus 733 Lp~~p~~ 739 (1159)
++...|.
T Consensus 98 ldE~~Y~ 104 (112)
T 3l46_A 98 AGETMYL 104 (112)
T ss_dssp CCGGGSB
T ss_pred cChhhce
Confidence 9977653
No 42
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.20 E-value=5.3e-12 Score=121.11 Aligned_cols=88 Identities=15% Similarity=0.192 Sum_probs=76.9
Q ss_pred CCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhHhcCC-CeeecchHHHHHhcCc
Q 001089 653 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKK 731 (1159)
Q Consensus 653 ~s~lF~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~~~~~Th~Ia~~~~~~k~~~a~~~~-~VV~p~WV~dCi~~~~ 731 (1159)
...+|+|+.+|+.+ .....+.+|.++|..|||++....+..+||+|+....+.||+.+.+++ +||+++||.||+++|+
T Consensus 9 ~~~~F~g~~i~~sg-~~~~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~~~K~~~a~~~~i~IV~~~Wl~dsi~~g~ 87 (109)
T 2cou_A 9 KVPPFQDCILSFLG-FSDEEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTVKDLPFEPSKKLFVVKQEWFWGSIQMDA 87 (109)
T ss_dssp CCCTTTTCBEEEES-SCHHHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTTCSSCSSCCCTTSEEECHHHHHHHHHTTS
T ss_pred cCCcCCCeEEEecC-CCHHHHHHHHHHHHHcCCEEecccCCCccEEEEeCCccHHHHHHHHCCCeEecHHHHHHHHHcCC
Confidence 35699999999865 445678999999999999999888888999999887777888888887 9999999999999999
Q ss_pred cCCCCccccc
Q 001089 732 LLQLQPKYYL 741 (1159)
Q Consensus 732 lLp~~p~~~l 741 (1159)
.++..+|.+-
T Consensus 88 ~ldE~~Y~~~ 97 (109)
T 2cou_A 88 RAGETMYLYE 97 (109)
T ss_dssp CCCGGGTBCC
T ss_pred cCChhccCCC
Confidence 9998876443
No 43
>3qwu_A DNA ligase; structural genomics, PSI-2, midwest center for structural GE MCSG; HET: DNA ADN; 2.35A {Aquifex aeolicus}
Probab=99.20 E-value=1.2e-10 Score=131.97 Aligned_cols=151 Identities=21% Similarity=0.218 Sum_probs=103.0
Q ss_pred HHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEecCCCCc---CcchhhHHH-HHHHhcccCceeecceEEEEeCCCCcc
Q 001089 238 AWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDH---SEYGHAMSK-IIEQNVLVDRCILDGEMLVWDTSLNRF 313 (1159)
Q Consensus 238 ~~~k~~~~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~---t~~~p~l~~-~l~~~~~~~~~ILDGElv~~d~~~~~~ 313 (1159)
.++.....+|++|+|+||.++-+.+.+|++..+||+|... |..++.+.. .+...+ ++++|||||++-+ +
T Consensus 66 ~i~~~f~~~~~veEKLDG~NVRi~~~dG~ilA~TRgG~icP~tT~r~~~~~~~~f~~~~--P~l~LdGEl~g~~---n-- 138 (370)
T 3qwu_A 66 GLREQFEAPFWVEEKVDGYNTRIFKYGDNYYALSRGGFICPFTTDRLPDLIDLRILDEN--PDLVICAEVAGPE---N-- 138 (370)
T ss_dssp HHHHHCSSCEEEEEECSSEEEEEEEETTEEEEECTTSCBCHHHHHHHHHHCCCHHHHHC--TTEEEEEEEECTT---C--
T ss_pred hhhhcCCCcEEEEEeeCCeEEEEEEECCEEEEEcCCCcccCcchhhhhhhcCchhhhcC--CCeEEEEEEEcCC---C--
Confidence 3444334689999999999998877777899999999875 333333322 232333 6899999998732 1
Q ss_pred cccccHHHHHHHhhcCCCCCCCeEEEEEeeeecCCccccCCCHHHHHHHHHHhhccCCCcceeeccCCCCCccccCCCCC
Q 001089 314 AEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEP 393 (1159)
Q Consensus 314 ~pFg~lq~i~~~~r~~~~~~~~~~~~vFDiL~lnG~~l~~~pl~eRr~~L~~~i~~~~~~~~i~~p~~~~~~~v~~~~~~ 393 (1159)
||.. ........++.|+||||...+ ...-+|+.+|+++|+++-.+.. .++
T Consensus 139 -py~~--------~s~~y~~~~i~F~VFDV~d~~--~~~~L~~~eR~~ll~~~~lp~V---~ii---------------- 188 (370)
T 3qwu_A 139 -PYIE--------ESPPYVKEDVQLFVFDFMKKN--EQGFLSQEEKMELIEKYNLPHV---EIL---------------- 188 (370)
T ss_dssp -SSCS--------CCCTTCCSSCEEEEEEEEETT--CCSCCCHHHHHHHHHHHTCCBC---CEE----------------
T ss_pred -Cccc--------cCCcccccCceEEEEeCcccc--CCCcCCHHHHHHHHHHCCCCCc---cEE----------------
Confidence 3320 000012357899999999854 2345799999999998754422 111
Q ss_pred ccceecC--CHHHHHHHHHHHHHcCCceEEEecCC
Q 001089 394 CWSLVAH--NVDEVEKFFKETIENRDEGIVLKDLG 426 (1159)
Q Consensus 394 ~~~~~~~--~~~ei~~~~~~ai~~g~EGlVlK~~d 426 (1159)
.+.... +.+++.+++++..+.|.||||+|+++
T Consensus 189 -~~~~~~~~~~~~l~~~l~~l~~~g~EGVVlK~~~ 222 (370)
T 3qwu_A 189 -GRFTASEEGIKKIKEILKRFNEEGREGVVFKEDS 222 (370)
T ss_dssp -EEECSSHHHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred -EEeCCCCCCHHHHHHHHHHHHhCCCcEEEEecCc
Confidence 022334 57789999999999999999999975
No 44
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.17 E-value=6.9e-11 Score=117.28 Aligned_cols=99 Identities=22% Similarity=0.358 Sum_probs=75.9
Q ss_pred cccCccccccCCCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhHhc---CC-Ce
Q 001089 642 FLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKR---RG-DV 717 (1159)
Q Consensus 642 ~~~~~~s~~~~~s~lF~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~~~~~Th~Ia~~~~~~k~~~a~~---~~-~V 717 (1159)
+...|+.-......+|+|+.|||. +.....++.|+++|..|||+++..++..+||+|+.+. ..+++.+.. .. .|
T Consensus 26 ~~~~d~~~~~~~~~lF~g~~i~i~-G~~~~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~-~~~~~~~~~~~~~~~~i 103 (132)
T 1wf6_A 26 LENLDVSAFQAPEDLLDGCRIYLC-GFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDY-DDELKQFWNKSAHRPHV 103 (132)
T ss_dssp STTCCGGGCCCCTTTTTTCEEEEE-SCCSHHHHHHHHHHHHTTCEEESSCCSSCCEEEESSC-CSHHHHHHHHSCCCCCE
T ss_pred hhhcCcccccccccccCCEEEEEE-CCChHHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCc-hHHHHHHHHhhCCCCeE
Confidence 344454444556789999999987 4445678899999999999999888888999998753 334443321 23 99
Q ss_pred eecchHHHHHhcCccCCCCcccccc
Q 001089 718 IHYSWVLDCCSQKKLLQLQPKYYLH 742 (1159)
Q Consensus 718 V~p~WV~dCi~~~~lLp~~p~~~l~ 742 (1159)
|+|+||.||+++|+++|.++|...+
T Consensus 104 V~~~Wv~dsi~~~~ll~e~~Y~~~~ 128 (132)
T 1wf6_A 104 VGAKWLLECFSKGYMLSEEPYIHSG 128 (132)
T ss_dssp EEHHHHHHHHHHSSCCCSGGGBCCC
T ss_pred echHHHHHHHHcCCcCCHhhccCCC
Confidence 9999999999999999999875443
No 45
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=99.15 E-value=7.4e-11 Score=126.96 Aligned_cols=180 Identities=13% Similarity=0.199 Sum_probs=114.1
Q ss_pred HHHHHHHcCCEEEecCCCCceEEEEecC-CChhhHhHhcCC-CeeecchHHHHHhcCccCCCCcccccccChhhhhhhhh
Q 001089 676 LHKMVVENGGTFSMNLNNSVTHCVAADN-KGLKYEAAKRRG-DVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQE 753 (1159)
Q Consensus 676 Le~lI~~~GG~iv~n~~~~~Th~Ia~~~-~~~k~~~a~~~~-~VV~p~WV~dCi~~~~lLp~~p~~~l~~s~~t~~~~~~ 753 (1159)
+.++|..+||.++.+.. .+||+|+... .|.||..++..+ +||+|+||.+|++.|+.++.++| .+.... ....
T Consensus 21 ~~~~i~~lGg~v~~~~~-~~THlV~~~~~RT~K~l~Aia~g~~IVs~~Wl~~~~~~~~~l~e~~y-~l~d~~-~e~~--- 94 (220)
T 3l41_A 21 SIDNLKKLDMSITSNPS-KCTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLKTHEIVDEEPY-LLNDPE-KELE--- 94 (220)
T ss_dssp CCGGGGGGTEEECSCTT-TCSEEECSSCCCBHHHHHHGGGCCEEECHHHHHHHHHHTSCCCSGGG-BCCCHH-HHHH---
T ss_pred CcchHhhcceeeccCch-hhhhhhhhhHhhhcceeecCCCCCeEEEhHHHHhhhhhhhccccCcc-ccCCcH-HHhh---
Confidence 38899999999998876 5999998654 688999888888 99999999999999999998875 332211 0000
Q ss_pred cccccCCCcccCCChhHHHHHhhccCCCCCcchhHHHhhhcCCCCCCCcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHH
Q 001089 754 EVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLK 833 (1159)
Q Consensus 754 ~~D~~GDSy~~~~~~~~L~~ll~~~~~s~~~~~i~~l~~~~~~~~~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~ 833 (1159)
|| | + +...+.+ -+. ....||+|+.|||..... ..+. .+.|.
T Consensus 95 ----~~--~----~---l~~~~~r------------ar~-----~~~~LF~G~~f~it~~~~-~~p~--------~~~l~ 135 (220)
T 3l41_A 95 ----LG--C----T---LESALKR------------ARA-----QGPSLLEDYVVYLTSKTV-APEN--------VPAVI 135 (220)
T ss_dssp ----HT--S----C---HHHHHHH------------HHH-----HCSCTTTTSEEEEETTSS-CGGG--------HHHHH
T ss_pred ----cc--c----c---HHHHHHH------------HHh-----cCchhhhheeEEEecccc-CCCC--------CceEE
Confidence 11 0 0 1111110 000 124789999999987530 0112 35789
Q ss_pred HHHHhcCCEEEccCC--C--------ceEEEEeccCCcccchhhHHHHHHHHhhhhccCCccEEecccHHHHHHHcCCcc
Q 001089 834 LEISFHGGKVCNNLA--N--------ATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKS 903 (1159)
Q Consensus 834 ~~I~~~GG~v~~~ls--~--------vTHVIV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~IVs~~WL~~ci~~g~~v 903 (1159)
.+|+.+||++....+ . -..||+.... +.... ..+.... .....++||+.+||..||-.+.+-
T Consensus 136 ~iI~~~GG~v~~~p~~~~~~~~~~~~~~~~vis~~~----d~~~~-~~f~~~~---~~~~~~~i~~~e~ll~~il~q~l~ 207 (220)
T 3l41_A 136 SIVKSNGGVCSTLNVYNKRLARHLEDGNVVLITCNE----DSHIW-TNFLDNA---SQNKTIFLQNYDWLIKTVLRQEID 207 (220)
T ss_dssp HHHHHTTCEEEEECSCCHHHHHHHHHCCEEEEECGG----GHHHH-TTTHHHH---TTCTTEEEEEHHHHHHHHHHTCCC
T ss_pred EEEecCCcEechhhHHHHHHHHhcccCCEEEEEeCC----cchHH-HHhhccc---cccceEEEechhHHHHHHHHHHcC
Confidence 999999999998211 0 1244444322 22111 1121111 124578899999999999887655
Q ss_pred CCCCC
Q 001089 904 EEYEY 908 (1159)
Q Consensus 904 ~E~~Y 908 (1159)
=++.+
T Consensus 208 ~~~~~ 212 (220)
T 3l41_A 208 VNDRI 212 (220)
T ss_dssp TTCCB
T ss_pred cchHH
Confidence 44444
No 46
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.15 E-value=4.8e-11 Score=111.77 Aligned_cols=85 Identities=22% Similarity=0.428 Sum_probs=67.3
Q ss_pred CCCcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC--CceEEEEeccCCcccchhhHHHHHHHHh
Q 001089 799 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA--NATHVVVLSVLGYDVNFNSLTESFTARE 876 (1159)
Q Consensus 799 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls--~vTHVIV~~~~~~~~~~~~l~~~l~~~~ 876 (1159)
+..+|+||+||+.++.. .+ ...|..+|..+||++...++ .|||||+..... ..++.
T Consensus 9 ~~~lF~g~~~~isg~~~---~~--------~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~~-----~k~~~------ 66 (97)
T 2ebw_A 9 SSTIFSGVAIYVNGYTD---PS--------AEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPN-----AKIKE------ 66 (97)
T ss_dssp CCCTTTTCEEEECSSCS---SC--------HHHHHHHHHHTTCEECSSCCSSSCCEEECSCCCT-----THHHH------
T ss_pred CCCCCCCeEEEEeCCCc---cc--------HHHHHHHHHHcCCEEeeecCCCCCEEEEecCCCh-----HHHHH------
Confidence 45799999999999753 12 45789999999999988775 599999976431 11111
Q ss_pred hhhccCCccEEecccHHHHHHHcCCccCCCCCCC
Q 001089 877 KHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSL 910 (1159)
Q Consensus 877 ~~~~~~~~~~IVs~~WL~~ci~~g~~v~E~~Y~v 910 (1159)
...++||+++||.+|+++|+++|+++|.+
T Consensus 67 -----~~~~~iV~p~Wl~dci~~~~~l~~~~Y~l 95 (97)
T 2ebw_A 67 -----LKGEKVIRPEWIVESIKAGRLLSYIPYQL 95 (97)
T ss_dssp -----TSSSCCBCTHHHHHHHHHTSCCCSGGGBS
T ss_pred -----hcCCCEeChHHHHHHHHcCCccCchHcEe
Confidence 12679999999999999999999999976
No 47
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=99.14 E-value=7.9e-12 Score=119.16 Aligned_cols=98 Identities=16% Similarity=0.253 Sum_probs=72.1
Q ss_pred CCCCcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEeccCCcccchhhHHHHHHHHh
Q 001089 798 DKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTARE 876 (1159)
Q Consensus 798 ~~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVIV~~~~~~~~~~~~l~~~l~~~~ 876 (1159)
.+..+|+||+|||..... ... +++.....++.+||++++.++ +||||||.+.. +++++.+++..
T Consensus 7 ~~~~~F~g~~v~~~p~~~--~~~-------r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~----s~~~~l~~l~~-- 71 (106)
T 2jw5_A 7 EAEEWLSSLRAHVVRTGI--GRA-------RAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGM----DYERALRLLRL-- 71 (106)
T ss_dssp CGGGCGGGSCCCBCTTTC--CSS-------STTHHHHHHHHTTCCCCSTTCTTCCEEEECSSS----CHHHHHHHTTC--
T ss_pred cCcCEeCCeEEEEEecCC--chH-------HHHHHHHHHHHcCCEEeeccCCCccEEEEcCCC----CHHHHHHHHhh--
Confidence 467899999999975432 111 235667788999999999997 69999997432 34444444421
Q ss_pred hhhccCCccEEecccHHHHHHHcCCccCCCCCCCCC
Q 001089 877 KHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKP 912 (1159)
Q Consensus 877 ~~~~~~~~~~IVs~~WL~~ci~~g~~v~E~~Y~v~~ 912 (1159)
......++||+++|+++||+++++|+|+.|.+..
T Consensus 72 --~~l~~~~~iV~~~Wv~dci~~~~llde~~y~~~~ 105 (106)
T 2jw5_A 72 --PQLPPGAQLVKSAWLSLCLQERRLVDVAGFSIFI 105 (106)
T ss_dssp --SSCCSSCEEEEHHHHHHHHHTCSCCCGGGTBCSC
T ss_pred --cccCCCcEEecCchHHHHHhcCcccCcccccccC
Confidence 0112467999999999999999999999998764
No 48
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=1.9e-10 Score=113.63 Aligned_cols=90 Identities=16% Similarity=0.280 Sum_probs=72.0
Q ss_pred CcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEeccCCcccchhhHHHHHHHHhhhh
Q 001089 801 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKHL 879 (1159)
Q Consensus 801 ~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVIV~~~~~~~~~~~~l~~~l~~~~~~~ 879 (1159)
.+|.||+|||.++.. . .+..+..+|..+||+++..++ +|||||+....+ ..+. +..
T Consensus 21 ~~f~g~~i~itG~~~---~--------~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~--~K~~---~A~------- 77 (129)
T 2d8m_A 21 KILQGVVVVLSGFQN---P--------FRSELRDKALELGAKYRPDWTRDSTHLICAFANT--PKYS---QVL------- 77 (129)
T ss_dssp TTSTTEEEEEESCCT---T--------HHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSC--HHHH---HHH-------
T ss_pred ccCCCeEEEEeCCCc---H--------HHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCC--hHHH---HHH-------
Confidence 479999999999752 1 256889999999999999998 699999986432 1222 211
Q ss_pred ccCCccEEecccHHHHHHHcCCccCCCCCCCCCCCC
Q 001089 880 LWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTGM 915 (1159)
Q Consensus 880 ~~~~~~~IVs~~WL~~ci~~g~~v~E~~Y~v~~~~~ 915 (1159)
...++||+++||.+|++.+++++|+.|.+..+..
T Consensus 78 --~~gi~IV~~~Wl~d~~~~~~~l~e~~Y~l~~~~~ 111 (129)
T 2d8m_A 78 --GLGGRIVRKEWVLDCHRMRRRLPSQRYLMAGPGS 111 (129)
T ss_dssp --HHTCEEEETHHHHHHHHTTSCCCGGGGBCSSSSC
T ss_pred --HCCCcEecHHHHHHHHHhCCcCChHhcccCCCCc
Confidence 1468999999999999999999999999887764
No 49
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.08 E-value=2.3e-10 Score=128.80 Aligned_cols=148 Identities=14% Similarity=0.231 Sum_probs=109.4
Q ss_pred HHHHHcCCE-EEec--------CC-CCceEEEEecCCChhhHhHhcCC-CeeecchHHHHHhcCccCCCCcccccccChh
Q 001089 678 KMVVENGGT-FSMN--------LN-NSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKKLLQLQPKYYLHLSDS 746 (1159)
Q Consensus 678 ~lI~~~GG~-iv~n--------~~-~~~Th~Ia~~~~~~k~~~a~~~~-~VV~p~WV~dCi~~~~lLp~~p~~~l~~s~~ 746 (1159)
+.|+++++. +++- .. +..+..|+.+..+..|..+...+ +||.|+||.+|++.++.+|..++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~~~F~g~~f~~l~~~~~~iv~p~~v~~c~~~~~~lp~~~~P~y----- 102 (298)
T 3olc_X 28 ESIKEFQSEEYLQIITEEEALKIKENDRSLYICDPFSGVVFDHLKKLGCRIVGPQVVIFCMHHQRCVPRAEHPVY----- 102 (298)
T ss_dssp HHHHHHSCGGGEEEEEHHHHTTCCSCCSCEEECSSSCSHHHHHHHHHTCEEECHHHHHHHHHTTCCCCCCSSCBC-----
T ss_pred HHHHHhcCCcccEEecHHHHhhCCCCCCeEEEecCCCCHHHHHHHHCCCCEECHHHHHHHHHhCCcCCCCCCccc-----
Confidence 356777777 3331 11 12356666777888899988877 99999999999999999987653111
Q ss_pred hhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhHHHhhhcCCCCCCCcCCCeEEEEcCCCCCCCCchHHHHH
Q 001089 747 SKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVLLG 826 (1159)
Q Consensus 747 t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~~~s~~~~~i~~l~~~~~~~~~~~lF~gc~~yl~~~~~~~~~d~~~i~~ 826 (1159)
..+|.|++|++.++.+ +
T Consensus 103 -----------------------------------------------------~~~l~g~~~~~tG~~~----~------ 119 (298)
T 3olc_X 103 -----------------------------------------------------NMVMSDVTISCTSLEK----E------ 119 (298)
T ss_dssp -----------------------------------------------------CCTTTTCEEEEESCCH----H------
T ss_pred -----------------------------------------------------ccccCCeEEEeCCCcH----H------
Confidence 2369999999999752 1
Q ss_pred HHHHHHHHHHHhcCCEEEccCC-CceEEEEeccCCcccchhhHHHHHHHHhhhhccCCccEEecccHHHHHHHcCCccCC
Q 001089 827 LALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEE 905 (1159)
Q Consensus 827 ~~~~~l~~~I~~~GG~v~~~ls-~vTHVIV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~IVs~~WL~~ci~~g~~v~E 905 (1159)
.+..+...|..+||+++.+++ ++||||+....+ ..+ +... ...+.||+++||.+|+..++.++.
T Consensus 120 -~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~~t--~Ky---~~A~---------~~gi~IV~~~Wl~~c~~~~~~~~~ 184 (298)
T 3olc_X 120 -KREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGS--KKY---LVAA---------NLKKPILLPSWIKTLWEKSQEKKI 184 (298)
T ss_dssp -HHHHHHHHHHHTTCEECSSCCTTCCEEEESSSCS--HHH---HHHH---------HTTCCEECHHHHHHHHHHHHTTCC
T ss_pred -hHHHHHHHHHHCCCEEecCcCCCeeEEEEeCCCC--hHH---HHHH---------HCCCeEeeHHHHHHHHHcCCcCCc
Confidence 367889999999999999998 699999986432 122 2211 145799999999999999988765
Q ss_pred CCC
Q 001089 906 YEY 908 (1159)
Q Consensus 906 ~~Y 908 (1159)
..|
T Consensus 185 ~~~ 187 (298)
T 3olc_X 185 TRY 187 (298)
T ss_dssp SSG
T ss_pred ccc
Confidence 443
No 50
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.08 E-value=1.9e-10 Score=109.90 Aligned_cols=93 Identities=14% Similarity=0.155 Sum_probs=69.6
Q ss_pred CCCcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEeccCCcccchhhHHHHHHHHhh
Q 001089 799 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREK 877 (1159)
Q Consensus 799 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVIV~~~~~~~~~~~~l~~~l~~~~~ 877 (1159)
...+|.||+|||.++.+ . .+..++.+|..+||+++..++ +|||||+....+. .-..+++..
T Consensus 12 ~~~~l~g~~i~isg~~~---~--------~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~--~~~K~~~A~----- 73 (107)
T 3l3e_A 12 APKPLHKVVVCVSKKLS---K--------KQSELNGIAASLGADYRRSFDETVTHFIYQGRPND--TNREYKSVK----- 73 (107)
T ss_dssp --CTTTTCEEEECGGGG---G--------GHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTC--CCHHHHHHH-----
T ss_pred ccCCCCCeEEEEeCCCh---H--------hHHHHHHHHHHcCCEEeccccCCceEEEecCCCCC--CCHHHHHHH-----
Confidence 34689999999999753 1 246788999999999999998 6999999532111 111222211
Q ss_pred hhccCCccEEecccHHHHHHHcCCccCCCCCCCCCC
Q 001089 878 HLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPT 913 (1159)
Q Consensus 878 ~~~~~~~~~IVs~~WL~~ci~~g~~v~E~~Y~v~~~ 913 (1159)
...++||+++||.+|++.++++||++|++...
T Consensus 74 ----~~gi~IV~~~Wl~~c~~~~~~l~e~~Y~~~~~ 105 (107)
T 3l3e_A 74 ----ERGVHIVSEHWLLDCAQECKHLPESLYPHTYN 105 (107)
T ss_dssp ----HTTCEEECHHHHHHHHHHTSCCCGGGCCTTCC
T ss_pred ----HCCCeEecHHHHHHHHHhCCCCchhhCCCCCC
Confidence 24689999999999999999999999987654
No 51
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=1.5e-09 Score=102.19 Aligned_cols=80 Identities=20% Similarity=0.171 Sum_probs=62.5
Q ss_pred CCCcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEcc-----------CC-CceEEEEeccCCcccchh
Q 001089 799 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNN-----------LA-NATHVVVLSVLGYDVNFN 866 (1159)
Q Consensus 799 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~-----------ls-~vTHVIV~~~~~~~~~~~ 866 (1159)
...||+||+|||+...+ ++.|..+|+.+||+++.+ .+ .+||+|++.+. ..
T Consensus 9 ~~~LF~g~~F~i~~e~p-------------~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~-----~~ 70 (100)
T 2ep8_A 9 HKKLFEGLKFFLNREVP-------------REALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPG-----QQ 70 (100)
T ss_dssp SCCTTSSCEEECCSSSC-------------HHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTT-----TS
T ss_pred hHHHcCCcEEEEecCCC-------------HHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccc-----hh
Confidence 46799999999987542 457788999999999976 23 59999997532 11
Q ss_pred hHHHHHHHHhhhhccCCccEEecccHHHHHHHcCCccCCCCCC
Q 001089 867 SLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYS 909 (1159)
Q Consensus 867 ~l~~~l~~~~~~~~~~~~~~IVs~~WL~~ci~~g~~v~E~~Y~ 909 (1159)
+ .....++|.+.||.+|+.+++++|+++|.
T Consensus 71 ---~----------~~~~r~~VqPqWV~Dcin~~~lLp~~~Y~ 100 (100)
T 2ep8_A 71 ---T----------SVIGRCYVQPQWVFDSVNARLLLPVAEYF 100 (100)
T ss_dssp ---C----------CBTTBEEECTHHHHHHHHHTSCCCTTTCC
T ss_pred ---h----------hcCCCeEEcchHHHHHHhcCCcCChhhcC
Confidence 0 01334899999999999999999999994
No 52
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=98.92 E-value=2e-09 Score=102.67 Aligned_cols=85 Identities=21% Similarity=0.343 Sum_probs=71.9
Q ss_pred CcccCeEEEEEcC-CCC--CChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhHhcCC-CeeecchHHHHHhcC
Q 001089 655 SIFSDMVFYFVNV-PPA--YSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQK 730 (1159)
Q Consensus 655 ~lF~G~~F~vv~~-~~~--~~k~eLe~lI~~~GG~iv~n~~~~~Th~Ia~~~~~~k~~~a~~~~-~VV~p~WV~dCi~~~ 730 (1159)
.+|+|+.+||... ... ...+.+..++..+||+++..++..+||+|+.+..+.+++.+.+++ +||+|+||.+|++++
T Consensus 6 p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~~~~~~~A~~~~i~iV~~~Wv~~C~~~~ 85 (107)
T 3pa6_A 6 PILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGYQSTWDKAQKRGVKLVSVLWVEKCRTAG 85 (107)
T ss_dssp CTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCTTCCEEEEESCCHHHHHHHHHHTCEEECHHHHHHHHHHT
T ss_pred cccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCCCccEEEEeCCCChHHHHHhcCCCEEECHHHHHHHHHhC
Confidence 5999999998432 112 345789999999999999999989999999887777888888877 999999999999999
Q ss_pred ccCCCCccc
Q 001089 731 KLLQLQPKY 739 (1159)
Q Consensus 731 ~lLp~~p~~ 739 (1159)
+.++.++|.
T Consensus 86 ~~vdE~~Y~ 94 (107)
T 3pa6_A 86 AHIDESLFP 94 (107)
T ss_dssp SCCCGGGSB
T ss_pred ccCChhccc
Confidence 999988753
No 53
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=98.88 E-value=1.4e-09 Score=99.20 Aligned_cols=74 Identities=24% Similarity=0.370 Sum_probs=58.8
Q ss_pred CCCcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC--CceEEEEeccCCcccchhhHHHHHHHHh
Q 001089 799 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA--NATHVVVLSVLGYDVNFNSLTESFTARE 876 (1159)
Q Consensus 799 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls--~vTHVIV~~~~~~~~~~~~l~~~l~~~~ 876 (1159)
...||.||+|||+...+ + ...|.++|.+|||+++.+.+ ++||||+....
T Consensus 13 LpdiFsg~~~~l~~~v~----~--------~~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~~~----------------- 63 (88)
T 3pc7_A 13 LLDIFTGVRLYLPPSTP----D--------FSRLRRYFVAFDGDLVQEFDMTSATHVLGSRDK----------------- 63 (88)
T ss_dssp CCCCSTTCEECCCTTST----T--------HHHHHHHHHHTTCEECCGGGGGGCSEEESCCTT-----------------
T ss_pred CChhhcCeEEEccCCcC----c--------hhhheeeeeecCCEEecccCCCcCeEEecCCCc-----------------
Confidence 34799999999988542 2 24788999999999988655 59999964310
Q ss_pred hhhccCCccEEecccHHHHHHHcCCccCCC
Q 001089 877 KHLLWNKKLHVVRSQWLEDCLAKEQKSEEY 906 (1159)
Q Consensus 877 ~~~~~~~~~~IVs~~WL~~ci~~g~~v~E~ 906 (1159)
+...++|+++||++||+.+++||+.
T Consensus 64 -----~~~~~~V~p~WI~dcI~k~~Ll~~~ 88 (88)
T 3pc7_A 64 -----NPAAQQVSPEWIWACIRKRRLVAPS 88 (88)
T ss_dssp -----CTTSEEECHHHHHHHHHHTSCCSCC
T ss_pred -----CCCCcEEchHHHHHHHhCCcccCCC
Confidence 2456899999999999999999863
No 54
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=98.83 E-value=1.4e-09 Score=99.20 Aligned_cols=73 Identities=19% Similarity=0.456 Sum_probs=57.8
Q ss_pred CCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCC-CceEEEEecCCChhhHhHhcCC-CeeecchHHHHHhcC
Q 001089 653 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNN-SVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQK 730 (1159)
Q Consensus 653 ~s~lF~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~~~-~~Th~Ia~~~~~~k~~~a~~~~-~VV~p~WV~dCi~~~ 730 (1159)
--++|+|+.|+|-+..+ ....|++.|.++||.++.+.+. .+||+|+... ...+ .+|+|+||+|||++|
T Consensus 13 LpdiFsg~~~~l~~~v~--~~~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~~--------~~~~~~~V~p~WI~dcI~k~ 82 (88)
T 3pc7_A 13 LLDIFTGVRLYLPPSTP--DFSRLRRYFVAFDGDLVQEFDMTSATHVLGSRD--------KNPAAQQVSPEWIWACIRKR 82 (88)
T ss_dssp CCCCSTTCEECCCTTST--THHHHHHHHHHTTCEECCGGGGGGCSEEESCCT--------TCTTSEEECHHHHHHHHHHT
T ss_pred CChhhcCeEEEccCCcC--chhhheeeeeecCCEEecccCCCcCeEEecCCC--------cCCCCcEEchHHHHHHHhCC
Confidence 35799999999854432 2369999999999999887663 6899995432 1223 899999999999999
Q ss_pred ccCCC
Q 001089 731 KLLQL 735 (1159)
Q Consensus 731 ~lLp~ 735 (1159)
++||.
T Consensus 83 ~Ll~~ 87 (88)
T 3pc7_A 83 RLVAP 87 (88)
T ss_dssp SCCSC
T ss_pred cccCC
Confidence 99985
No 55
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=98.80 E-value=7e-09 Score=100.77 Aligned_cols=97 Identities=18% Similarity=0.089 Sum_probs=74.1
Q ss_pred CCcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEeccCCcccchhhHHHHHHHHhhh
Q 001089 800 WSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKH 878 (1159)
Q Consensus 800 ~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVIV~~~~~~~~~~~~l~~~l~~~~~~ 878 (1159)
...|.+|++||.... +...+++.|.++++..|+++.+.++ +|||||+.+. +..++.+||.....+
T Consensus 8 ~~~F~~v~iyive~k---------mG~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~-----s~~~~~~~L~~~~~~ 73 (133)
T 2dun_A 8 STRFPGVAIYLVEPR---------MGRSRRAFLTGLARSKGFRVLDACSSEATHVVMEET-----SAEEAVSWQERRMAA 73 (133)
T ss_dssp SCSEEEEEEEECHHH---------HCSHHHHHHHHHHHHHTEEECSSCCTTCCEEEESSC-----CHHHHHHHHHHHHHH
T ss_pred ccccCccEEEEecCC---------cCHHHHHHHHHHHHhcCCEeccccCCCceEEEecCC-----CHHHHHHHHHHhhcc
Confidence 457999999999854 2224678999999999999999998 5999999542 345666677322222
Q ss_pred hc-cCCccEEecccHHHHHHHcCCccCCCCCCC
Q 001089 879 LL-WNKKLHVVRSQWLEDCLAKEQKSEEYEYSL 910 (1159)
Q Consensus 879 ~~-~~~~~~IVs~~WL~~ci~~g~~v~E~~Y~v 910 (1159)
+. ....+++|...|+.+|+++|+.|+++.|.+
T Consensus 74 l~~~~~~~~lLdisWltecm~~g~pV~~e~~~~ 106 (133)
T 2dun_A 74 APPGCTPPALLDISWLTESLGAGQPVPVECRHR 106 (133)
T ss_dssp SCTTCCCCEEEEHHHHHHHHHHTSCCCCCTTTS
T ss_pred cCcCCCCcEEeccHHHHHHHhcCCcCCcccceE
Confidence 21 224589999999999999999999977653
No 56
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=98.72 E-value=1.6e-08 Score=116.65 Aligned_cols=86 Identities=20% Similarity=0.261 Sum_probs=76.1
Q ss_pred CCcccCeEEEEEcCCC---CCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhHhcC-C-CeeecchHHHHHh
Q 001089 654 TSIFSDMVFYFVNVPP---AYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRR-G-DVIHYSWVLDCCS 728 (1159)
Q Consensus 654 s~lF~G~~F~vv~~~~---~~~k~eLe~lI~~~GG~iv~n~~~~~Th~Ia~~~~~~k~~~a~~~-~-~VV~p~WV~dCi~ 728 (1159)
+.+|.|+.||+.+..+ ...+.++.++|..+||+++.+++..+||+|++...+.|++.|.+. + +||+|+||.+|+.
T Consensus 280 ~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~~t~K~~~A~~~~~I~IV~~~Wl~~c~~ 359 (372)
T 3ef0_A 280 QKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTESLS 359 (372)
T ss_dssp TTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSSCCSEEEECSCCCHHHHHHHHSSSCCEEEHHHHHHHHH
T ss_pred hhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCCCceEEEEcCCCchHHHHHHhcCCCEEEcHHHHHHHHH
Confidence 4799999999976542 345689999999999999999998899999998889999999888 4 9999999999999
Q ss_pred cCccCCCCccc
Q 001089 729 QKKLLQLQPKY 739 (1159)
Q Consensus 729 ~~~lLp~~p~~ 739 (1159)
+++.+|.++|-
T Consensus 360 ~~~~vdE~~Y~ 370 (372)
T 3ef0_A 360 QWKRLPESDYL 370 (372)
T ss_dssp TTSCCCGGGGB
T ss_pred hCCcCChhhce
Confidence 99999988763
No 57
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=98.69 E-value=1.3e-08 Score=118.98 Aligned_cols=87 Identities=21% Similarity=0.286 Sum_probs=76.9
Q ss_pred CCCcccCeEEEEEcCCC---CCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhHhcCC--CeeecchHHHHH
Q 001089 653 ETSIFSDMVFYFVNVPP---AYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG--DVIHYSWVLDCC 727 (1159)
Q Consensus 653 ~s~lF~G~~F~vv~~~~---~~~k~eLe~lI~~~GG~iv~n~~~~~Th~Ia~~~~~~k~~~a~~~~--~VV~p~WV~dCi 727 (1159)
.+.+|.|+.||+.+..+ ..++.+|..+|..+||+++.+++..+||+|++...+.||+.|.+++ +||+|+||.+|+
T Consensus 349 k~~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~~~~t~K~~~A~~~g~IkIVs~~WL~dcl 428 (442)
T 3ef1_A 349 KQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTESL 428 (442)
T ss_dssp HHTTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSSSCCSEEEECSCCCHHHHHHHHHSSSEEEEHHHHHHHH
T ss_pred hhcccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCCCCCceEEEeCCCCCHHHHHHHhcCCCEEEeHHHHHHHH
Confidence 46799999999976432 3467899999999999999999989999999998999999998874 899999999999
Q ss_pred hcCccCCCCccc
Q 001089 728 SQKKLLQLQPKY 739 (1159)
Q Consensus 728 ~~~~lLp~~p~~ 739 (1159)
.+++.+|..+|-
T Consensus 429 ~~~krldE~~Yl 440 (442)
T 3ef1_A 429 SQWKRLPESDYL 440 (442)
T ss_dssp HHTSCCCGGGTB
T ss_pred HcCCcCChhccc
Confidence 999999988763
No 58
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=98.63 E-value=1.3e-08 Score=107.87 Aligned_cols=79 Identities=23% Similarity=0.333 Sum_probs=60.8
Q ss_pred CCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhHhcCC-CeeecchHHHHHhcCc
Q 001089 653 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKK 731 (1159)
Q Consensus 653 ~s~lF~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~~~~~Th~Ia~~~~~~k~~~a~~~~-~VV~p~WV~dCi~~~~ 731 (1159)
...||+|+.|++++.....++++|+.+|..+||+++.++. .++ +|++.... ....+ +||+|+||+|||++++
T Consensus 116 ~~~LF~g~~~~~v~~~~~~~~~~L~~lI~~~GG~v~~~~~-~~~-iiI~~~~~-----~~~~~~~~V~p~Wi~DsI~~~~ 188 (199)
T 3u3z_A 116 RGTLFADQPVMFVSPASSPPVAKLCELVHLCGGRVSQVPR-QAS-IVIGPYSG-----KKKATVKYLSEKWVLDSITQHK 188 (199)
T ss_dssp CCCTTTTSCCEEECTTCSSCHHHHHHHHHHTTCCBCSSGG-GCS-EEESCCCS-----CCCTTCEEECHHHHHHHHHHTS
T ss_pred cchhhCCCeEEEECCCCCCCHHHHHHHHHHcCCEEeccCC-CCE-EEEeCCch-----hccCCCcEEChhHHHHHHHcCC
Confidence 3579999965445555567899999999999999999885 344 44444222 23344 9999999999999999
Q ss_pred cCCCCcc
Q 001089 732 LLQLQPK 738 (1159)
Q Consensus 732 lLp~~p~ 738 (1159)
++|+++|
T Consensus 189 llp~~~Y 195 (199)
T 3u3z_A 189 VCAPENY 195 (199)
T ss_dssp CCCGGGG
T ss_pred cCChHhc
Confidence 9999975
No 59
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=98.58 E-value=5.3e-08 Score=112.40 Aligned_cols=90 Identities=17% Similarity=0.264 Sum_probs=68.8
Q ss_pred CcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEeccCCcccchhhHHHHHHHHhhhh
Q 001089 801 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKHL 879 (1159)
Q Consensus 801 ~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVIV~~~~~~~~~~~~l~~~l~~~~~~~ 879 (1159)
.+|.||+|+|+|+.+..... +...+...+..+||+++..++ +|||||+....+. .++.+.
T Consensus 281 ~~L~G~~ivfSG~~~~~~~~-------~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~~t~-----K~~~A~------- 341 (372)
T 3ef0_A 281 KVLKGCRLLFSGVIPLGVDV-------LSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTE-----KVKKAV------- 341 (372)
T ss_dssp TTSTTCEEEEESSSCTTSCT-------TTSHHHHHHHHTTCEEESSSSSCCSEEEECSCCCH-----HHHHHH-------
T ss_pred hhcCCcEEEEecccCCCcch-------hHHHHHHHHHHcCCEEeCcCCCCceEEEEcCCCch-----HHHHHH-------
Confidence 57999999999986421110 124678899999999999998 6999999864321 122211
Q ss_pred ccCCccEEecccHHHHHHHcCCccCCCCCCC
Q 001089 880 LWNKKLHVVRSQWLEDCLAKEQKSEEYEYSL 910 (1159)
Q Consensus 880 ~~~~~~~IVs~~WL~~ci~~g~~v~E~~Y~v 910 (1159)
..+.++||+++||++|++.+++++|+.|++
T Consensus 342 -~~~~I~IV~~~Wl~~c~~~~~~vdE~~Y~l 371 (372)
T 3ef0_A 342 -SMGNIKVVKLNWLTESLSQWKRLPESDYLL 371 (372)
T ss_dssp -HSSSCCEEEHHHHHHHHHTTSCCCGGGGBC
T ss_pred -hcCCCEEEcHHHHHHHHHhCCcCChhhcee
Confidence 124689999999999999999999999986
No 60
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=98.56 E-value=2.2e-08 Score=95.30 Aligned_cols=89 Identities=15% Similarity=0.267 Sum_probs=64.9
Q ss_pred CCCCcccCeEEEEEcCCCCCC-hHHHHHHHHHcCCEEEecCCCCceEEEEecCCChh--hHhHhc-----CCCeeecchH
Q 001089 652 GETSIFSDMVFYFVNVPPAYS-LDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLK--YEAAKR-----RGDVIHYSWV 723 (1159)
Q Consensus 652 ~~s~lF~G~~F~vv~~~~~~~-k~eLe~lI~~~GG~iv~n~~~~~Th~Ia~~~~~~k--~~~a~~-----~~~VV~p~WV 723 (1159)
....+|+|+.||++....... ++-..+++.++||+++..+++++||+|+.+..+.+ .+.+.. ...||+++||
T Consensus 7 ~~~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~s~~~~l~~l~~~~l~~~~~iV~~~Wv 86 (106)
T 2jw5_A 7 EAEEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRLPQLPPGAQLVKSAWL 86 (106)
T ss_dssp CGGGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCSTTCTTCCEEEECSSSCHHHHHHHTTCSSCCSSCEEEEHHHH
T ss_pred cCcCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeeccCCCccEEEEcCCCCHHHHHHHHhhcccCCCcEEecCchH
Confidence 356799999999875443333 34455689999999999988889999986433222 111111 1279999999
Q ss_pred HHHHhcCccCCCCcccc
Q 001089 724 LDCCSQKKLLQLQPKYY 740 (1159)
Q Consensus 724 ~dCi~~~~lLp~~p~~~ 740 (1159)
.||++.+++++.++|++
T Consensus 87 ~dci~~~~llde~~y~~ 103 (106)
T 2jw5_A 87 SLCLQERRLVDVAGFSI 103 (106)
T ss_dssp HHHHHTCSCCCGGGTBC
T ss_pred HHHHhcCcccCcccccc
Confidence 99999999999988754
No 61
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=98.50 E-value=1.3e-07 Score=100.88 Aligned_cols=87 Identities=20% Similarity=0.235 Sum_probs=64.4
Q ss_pred CCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCC----ceE-EEEecCCC----hhhHhH-hcCC-Ceeecc
Q 001089 653 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNS----VTH-CVAADNKG----LKYEAA-KRRG-DVIHYS 721 (1159)
Q Consensus 653 ~s~lF~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~~~~----~Th-~Ia~~~~~----~k~~~a-~~~~-~VV~p~ 721 (1159)
...+|+|+.||+.+......+++|+.+|..+||+++.++... .+| +|+.+... .+++++ ...+ +||+++
T Consensus 112 ~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~~ 191 (214)
T 1t15_A 112 DRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTRE 191 (214)
T ss_dssp TSCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEHH
T ss_pred CCcccCCCEEEEEecCCCCCHHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCcccchhhHHHHHHhcCCcEEecc
Confidence 457999999998765555679999999999999998876421 234 44554322 134332 3334 999999
Q ss_pred hHHHHHhcCccCCCCccc
Q 001089 722 WVLDCCSQKKLLQLQPKY 739 (1159)
Q Consensus 722 WV~dCi~~~~lLp~~p~~ 739 (1159)
||+|||.+++++|+++|.
T Consensus 192 Wi~dsi~~~~~l~~~~Y~ 209 (214)
T 1t15_A 192 WVLDSVALYQCQELDTYL 209 (214)
T ss_dssp HHHHHHHHTSCCCSGGGB
T ss_pred HHHHhHhhcCcCCCccee
Confidence 999999999999999863
No 62
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=98.49 E-value=9.9e-08 Score=111.54 Aligned_cols=90 Identities=18% Similarity=0.281 Sum_probs=68.4
Q ss_pred CcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEeccCCcccchhhHHHHHHHHhhhh
Q 001089 801 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKHL 879 (1159)
Q Consensus 801 ~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVIV~~~~~~~~~~~~l~~~l~~~~~~~ 879 (1159)
.+|.||+|+|+|+.+... +. ....+...+..+||+++..++ +|||+|+....+. .+ +...
T Consensus 351 ~~L~G~~IvfSG~~p~~~-~~------~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~~~~t~--K~---~~A~------- 411 (442)
T 3ef1_A 351 KVLKGCRLLFSGVIPLGV-DV------LSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTE--KV---KKAV------- 411 (442)
T ss_dssp TTSTTCEEEEESSSCTTS-CS------TTSHHHHHHHTTTCEECSSSSSCCSEEEECSCCCH--HH---HHHH-------
T ss_pred cccCCcEEEEecccCCCC-Cc------cHHHHHHHHHHcCCEEeCCCCCCceEEEeCCCCCH--HH---HHHH-------
Confidence 479999999999864211 10 124678899999999999998 6999999864321 12 2211
Q ss_pred ccCCccEEecccHHHHHHHcCCccCCCCCCC
Q 001089 880 LWNKKLHVVRSQWLEDCLAKEQKSEEYEYSL 910 (1159)
Q Consensus 880 ~~~~~~~IVs~~WL~~ci~~g~~v~E~~Y~v 910 (1159)
..+.++||+++||++|+..+++++|..|++
T Consensus 412 -~~g~IkIVs~~WL~dcl~~~krldE~~YlL 441 (442)
T 3ef1_A 412 -SMGNIKVVKLNWLTESLSQWKRLPESDYLL 441 (442)
T ss_dssp -HHSSSEEEEHHHHHHHHHHTSCCCGGGTBC
T ss_pred -hcCCCEEEeHHHHHHHHHcCCcCChhcccc
Confidence 123689999999999999999999999986
No 63
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=98.43 E-value=2e-07 Score=99.40 Aligned_cols=82 Identities=22% Similarity=0.360 Sum_probs=61.9
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEe-cCC----------------------CCceEEEEecCCChhhH-
Q 001089 654 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSM-NLN----------------------NSVTHCVAADNKGLKYE- 709 (1159)
Q Consensus 654 s~lF~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~-n~~----------------------~~~Th~Ia~~~~~~k~~- 709 (1159)
..+|+|+.||+.+......+++|+.+|..+||+++. .+. ..+||.|+.... .++.
T Consensus 102 ~~lF~g~~~~l~~~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~-~~~~~ 180 (210)
T 2nte_A 102 PKLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDL-CNYHP 180 (210)
T ss_dssp CCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSC-SSCCC
T ss_pred ccccCceEEEEeccCCCCCHHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEeccc-cccCH
Confidence 579999999997655567799999999999999985 221 235788876542 2221
Q ss_pred -hHhcCC-CeeecchHHHHHhcCccCCCC
Q 001089 710 -AAKRRG-DVIHYSWVLDCCSQKKLLQLQ 736 (1159)
Q Consensus 710 -~a~~~~-~VV~p~WV~dCi~~~~lLp~~ 736 (1159)
.+...+ +||+++||+|||++++++|++
T Consensus 181 ~~~~~~~v~~V~~~Wl~dcI~~~~llp~~ 209 (210)
T 2nte_A 181 ERVRQGKVWKAPSSWFIDCVMSFELLPLD 209 (210)
T ss_dssp SCSEETTEEEEEHHHHHHHHHHTSCCCSC
T ss_pred HHHhccCcccccHHHHHHHHHhCeeccCC
Confidence 122234 899999999999999999986
No 64
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=5e-07 Score=87.30 Aligned_cols=91 Identities=22% Similarity=0.342 Sum_probs=69.6
Q ss_pred CCCcccCeEEEEEcCCC-CCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhHhc--------CCCeeecchH
Q 001089 653 ETSIFSDMVFYFVNVPP-AYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKR--------RGDVIHYSWV 723 (1159)
Q Consensus 653 ~s~lF~G~~F~vv~~~~-~~~k~eLe~lI~~~GG~iv~n~~~~~Th~Ia~~~~~~k~~~a~~--------~~~VV~p~WV 723 (1159)
...+|.|+.+|++...- ...++-+.++++.+||+++..+.+.+||||+.+.....+....+ ...||+.+||
T Consensus 17 p~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve~~~~~e~~~~l~~~~l~~~~~~~lv~i~Wl 96 (120)
T 2coe_A 17 QDIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENELSDSVTHIVAENNSGSDVLEWLQAQKVQVSSQPELLDVSWL 96 (120)
T ss_dssp SCCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEESSCCHHHHHHHHHHCCCCCSSCCEEEEHHHH
T ss_pred cccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeeccCCCcCEEEecCCCHHHHHHHHhccccccccccEEeecHHH
Confidence 45799999999975432 22355667899999999999888899999986543333333222 1389999999
Q ss_pred HHHHhcCccCCCCccccccc
Q 001089 724 LDCCSQKKLLQLQPKYYLHL 743 (1159)
Q Consensus 724 ~dCi~~~~lLp~~p~~~l~~ 743 (1159)
.+|++.|+++|.+.+|.|..
T Consensus 97 ~esmk~g~lv~ee~~~~l~~ 116 (120)
T 2coe_A 97 IECIGAGKPVEMTGKHQLSG 116 (120)
T ss_dssp HHHHHTTSCCCCSSSSBCCC
T ss_pred HHHHHcCCccCcccceEecc
Confidence 99999999999998888754
No 65
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=98.37 E-value=4.1e-07 Score=98.13 Aligned_cols=87 Identities=16% Similarity=0.232 Sum_probs=60.1
Q ss_pred CcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCC-----CceEEEEecC----CChhhHhHh-cCC-CeeecchH
Q 001089 655 SIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNN-----SVTHCVAADN----KGLKYEAAK-RRG-DVIHYSWV 723 (1159)
Q Consensus 655 ~lF~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~~~-----~~Th~Ia~~~----~~~k~~~a~-~~~-~VV~p~WV 723 (1159)
.+|.|+.||+.+......+++|+.+|..+||+++.++.. ..+|+|+... ...+++.+. ..+ +||+++||
T Consensus 116 ~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~Wl 195 (229)
T 1l0b_A 116 KLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDWV 195 (229)
T ss_dssp -CCTTCEEEECSCCSSSCHHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC-------------------CEEETHHH
T ss_pred hhhcCceEEEEecCCCCCHHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccchhhhHHHHHHHcCCeEeehhHH
Confidence 799999999975545567999999999999999988753 2466555442 233455442 334 99999999
Q ss_pred HHHHhcCccCCCCcccccc
Q 001089 724 LDCCSQKKLLQLQPKYYLH 742 (1159)
Q Consensus 724 ~dCi~~~~lLp~~p~~~l~ 742 (1159)
+|||.+++++|+++| ++.
T Consensus 196 ldsI~~~~~~~~~~Y-~l~ 213 (229)
T 1l0b_A 196 LDSISVYRCRDLDAY-LVQ 213 (229)
T ss_dssp HHHHHTTSCCCGGGG-BCC
T ss_pred HHHHhcCCcCCccce-Ecc
Confidence 999999999998875 443
No 66
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=98.37 E-value=4.2e-07 Score=97.70 Aligned_cols=90 Identities=18% Similarity=0.334 Sum_probs=69.4
Q ss_pred CCcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCCCceEEEEeccCCcccchhhHHHHHHHHhhhh
Q 001089 800 WSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHL 879 (1159)
Q Consensus 800 ~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~vTHVIV~~~~~~~~~~~~l~~~l~~~~~~~ 879 (1159)
...+.+++|+|+|+.. .+.+.+...|+.+||+++++..+|||+|++... +. .+ +...+
T Consensus 11 ~~~~~~~~i~~SG~~~-----------~~~~~l~~~i~~lGg~v~~~~~~~THLI~~~~~-rT--~K-~l~A~------- 68 (219)
T 3sqd_A 11 LTPELTPFVLFTGFEP-----------VQVQQYIKKLYILGGEVAESAQKCTHLIASKVT-RT--VK-FLTAI------- 68 (219)
T ss_dssp CCGGGCCEEEECSCCH-----------HHHHHHHHHHHHTTCEECSSGGGCSEEECSSCC-CC--HH-HHHHT-------
T ss_pred cCCCCCeEEEEeCCCh-----------HHHHHHHHHHHHCCCEEeCCCCCceEEEECCCC-CC--HH-HHHHH-------
Confidence 4458899999999753 134678899999999999988789999997532 11 12 11111
Q ss_pred ccCCccEEecccHHHHHHHcCCccCCCCCCCCCC
Q 001089 880 LWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPT 913 (1159)
Q Consensus 880 ~~~~~~~IVs~~WL~~ci~~g~~v~E~~Y~v~~~ 913 (1159)
.....||+++||.+|++.++.++|++|.+..+
T Consensus 69 --~~g~~IVs~~Wl~~c~~~~~~l~e~~y~l~d~ 100 (219)
T 3sqd_A 69 --SVVKHIVTPEWLEECFRCQKFIDEQNYILRDA 100 (219)
T ss_dssp --TTCSEEECHHHHHHHHHHTSCCCSGGGBCCCH
T ss_pred --HcCCCEecHHHHHHHHHcCCCCChHhccCCCc
Confidence 24568999999999999999999999988654
No 67
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=98.33 E-value=6.9e-07 Score=82.67 Aligned_cols=76 Identities=12% Similarity=0.174 Sum_probs=67.7
Q ss_pred CCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhHhcCC-CeeecchHHHHHhc
Q 001089 653 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQ 729 (1159)
Q Consensus 653 ~s~lF~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~~~~~Th~Ia~~~~~~k~~~a~~~~-~VV~p~WV~dCi~~ 729 (1159)
....|.|+.||+.+.... +|++++.+|.++||++..+.+..++|+|+++..+-|++.|...+ +||+.+|++++++.
T Consensus 4 ~~~~l~G~~~v~TG~l~~-~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~lgI~Ii~E~~f~~~l~~ 80 (92)
T 1l7b_A 4 GGEALKGLTFVITGELSR-PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLEA 80 (92)
T ss_dssp CCCSSTTCEEECSTTTTS-CHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHCSSSCCEEHHHHHHHHHH
T ss_pred CCCCcCCcEEEEecCCCC-CHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHHHcCCcEEeHHHHHHHHHh
Confidence 346799999998765555 99999999999999999999888999999888888999998888 99999999999973
No 68
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=98.28 E-value=8.1e-07 Score=94.77 Aligned_cols=85 Identities=14% Similarity=0.184 Sum_probs=62.2
Q ss_pred CcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCCCceEEEEeccCCcccchhhHHHHHHHHhhhhc
Q 001089 801 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLL 880 (1159)
Q Consensus 801 ~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~vTHVIV~~~~~~~~~~~~l~~~l~~~~~~~~ 880 (1159)
....+++|+|.|+.. + .++..|+.+||++++++++|||+|++... +. .+ +...+
T Consensus 8 ~~~~~~~v~~sG~~~----~----------~~~~~i~~lGg~~~~~~~~~THlI~~~~~-rt--~K-~l~a~-------- 61 (209)
T 2etx_A 8 QESTAPKVLFTGVVD----A----------RGERAVLALGGSLAGSAAEASHLVTDRIR-RT--VK-FLCAL-------- 61 (209)
T ss_dssp ----CCEEEECSSCC----H----------HHHHHHHHTTCEECSSTTTCSEEECSSCC-CS--HH-HHHHH--------
T ss_pred ccCCCcEEEEeCCCc----H----------HHHHHHHHCCCEEeCCCCCceEEEECCCC-CC--HH-HHHHH--------
Confidence 457899999999863 1 23678999999999999899999997532 11 22 11122
Q ss_pred cCCccEEecccHHHHHHHcCCccCCCCCCCCC
Q 001089 881 WNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKP 912 (1159)
Q Consensus 881 ~~~~~~IVs~~WL~~ci~~g~~v~E~~Y~v~~ 912 (1159)
.....||+++||.+|+++++.++|++|.+..
T Consensus 62 -~~g~~IV~~~Wl~~~~~~~~~l~e~~y~~~~ 92 (209)
T 2etx_A 62 -GRGIPILSLDWLHQSRKAGFFLPPDEYVVTD 92 (209)
T ss_dssp -HHTCCEECTHHHHHHHHHTSCCCSGGGBCCC
T ss_pred -hcCCccccHHHHHHHHHcCCCCChhhccccC
Confidence 1245799999999999999999999998853
No 69
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=98.18 E-value=2.9e-06 Score=93.70 Aligned_cols=88 Identities=16% Similarity=0.191 Sum_probs=61.5
Q ss_pred CCCcCCCeEEEEc-CCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCCC-ceEEEEeccCCcccchhhHHHHHHHHh
Q 001089 799 KWSCFHGCCIYFY-HSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN-ATHVVVLSVLGYDVNFNSLTESFTARE 876 (1159)
Q Consensus 799 ~~~lF~gc~~yl~-~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~-vTHVIV~~~~~~~~~~~~l~~~l~~~~ 876 (1159)
...||+|+.||+. +... .. .+.|..+|..+||+++.+++. +||||+.. . ...+ +..+
T Consensus 7 ~s~lF~G~~f~V~sg~~~---~~--------k~~L~~lI~~~GG~v~~n~~~~t~~iIa~~-~--~~k~---~~~~---- 65 (263)
T 3ii6_X 7 ISNIFEDVEFCVMSGTDS---QP--------KPDLENRIAEFGGYIVQNPGPDTYCVIAGS-E--NIRV---KNII---- 65 (263)
T ss_dssp CCCTTTTCEEEECCCC-----CC--------HHHHHHHHHHTTCEECSSCCTTEEEEECSS-C--CHHH---HHHH----
T ss_pred CcccCCCeEEEEEcCCCC---CC--------HHHHHHHHHHcCCEEEecCCCCEEEEEeCC-C--CHHH---HHHH----
Confidence 3569999999995 4321 12 457889999999999988875 45555542 2 1112 2111
Q ss_pred hhhccCCccEEecccHHHHHHHcCCccCCCCCCCC
Q 001089 877 KHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLK 911 (1159)
Q Consensus 877 ~~~~~~~~~~IVs~~WL~~ci~~g~~v~E~~Y~v~ 911 (1159)
..+...||+++||.+|+++++++|.++|.+-
T Consensus 66 ----~~g~~~IV~p~Wv~Dci~~~~llp~~p~~~~ 96 (263)
T 3ii6_X 66 ----LSNKHDVVKPAWLLECFKTKSFVPWQPRFMI 96 (263)
T ss_dssp ----HSCSCCEECHHHHHHHHHHTSCCCCCGGGEE
T ss_pred ----hcCCCCEeehHHHHHHHhcCCcCCCCHHHHh
Confidence 1245799999999999999999998888544
No 70
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=98.17 E-value=3.6e-06 Score=80.28 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=67.8
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCC-hhhHhHhcCC-CeeecchHHHHHhcC
Q 001089 654 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKG-LKYEAAKRRG-DVIHYSWVLDCCSQK 730 (1159)
Q Consensus 654 s~lF~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~~~~~Th~Ia~~~~~-~k~~~a~~~~-~VV~p~WV~dCi~~~ 730 (1159)
...|.|+.|||.+.....+|++++.+|.++||++...++..++|+|+++..+ -|+..|...+ +||+.+|++++++.+
T Consensus 30 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~sK~~kA~~lgI~Ii~E~~f~~ll~~~ 108 (109)
T 2k6g_A 30 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRNL 108 (109)
T ss_dssp TTTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCHHHHHHHHHHTCEEECHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcccCCceEEEECCCCChHHHHHHHHcCCeEEeHHHHHHHHHhC
Confidence 4579999999987666778999999999999999999988889999887766 6888888887 999999999999765
No 71
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=98.17 E-value=6.5e-07 Score=98.87 Aligned_cols=87 Identities=11% Similarity=0.044 Sum_probs=46.6
Q ss_pred CCCCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCC---h----hhHhH-h-c--------C
Q 001089 652 GETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKG---L----KYEAA-K-R--------R 714 (1159)
Q Consensus 652 ~~s~lF~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~~~~~Th~Ia~~~~~---~----k~~~a-~-~--------~ 714 (1159)
....+|+|+.||+.+......++-|+.+|..+||+++.+++..+||+|+ +..+ . +++.. . + .
T Consensus 156 ~~~~lF~g~~~yl~~~~~~~~~~~l~~~i~~~GG~v~~~l~~~t~hVV~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (264)
T 1z56_C 156 FPLFLFSNRIAYVPRRKISTEDDIIEMKIKLFGGKITDQQSLCNLIIIP-YTDPILRKDCMNEVHEKIKEQIKASDTIPK 234 (264)
T ss_dssp CCCC--------------------CHHHHHHHTTSCCCCSSSCSEEECC-CSSTTTHHHHSSHHHHTTTTTTTSSSSCCC
T ss_pred CchhhhCCeEEEEecCCCchhHHHHHHHHHHcCCEEecccCCCEEEEEe-CCCccchHHHHHHHHHHHHhhcccccccCC
Confidence 3467999999998654333445667889999999999887754455554 3322 1 12221 1 1 2
Q ss_pred C-CeeecchHHHHHhcCccCCCCccc
Q 001089 715 G-DVIHYSWVLDCCSQKKLLQLQPKY 739 (1159)
Q Consensus 715 ~-~VV~p~WV~dCi~~~~lLp~~p~~ 739 (1159)
. .||+|+||.||++.|+++|.++|.
T Consensus 235 ~~~iV~~~Wv~dci~~~~ll~e~~Y~ 260 (264)
T 1z56_C 235 IARVVAPEWVDHSINENCQVPEEDFP 260 (264)
T ss_dssp CCEEECTHHHHHHHTTSCCCSSCCC-
T ss_pred CCEEecHHHHHHHHHcCCcCCHHHcC
Confidence 2 799999999999999999999863
No 72
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=98.10 E-value=4.5e-06 Score=80.03 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=69.4
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEec---CCChhhHhHhcCC-Ceeecch-------
Q 001089 654 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAAD---NKGLKYEAAKRRG-DVIHYSW------- 722 (1159)
Q Consensus 654 s~lF~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~~~~~Th~Ia~~---~~~~k~~~a~~~~-~VV~p~W------- 722 (1159)
...|.|+.|+|.+.... +++++.++|.++||++....+..++|+|+++ ..+-|+..|...+ +||+.+|
T Consensus 8 ~~~l~G~~~ViTG~l~~-~R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~~l~~~~~~ 86 (113)
T 2cok_A 8 DKPLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMNKKMEEVKEANIRVVSEDFLQDVSAS 86 (113)
T ss_dssp CCSSSSCEEEECSCCSS-CHHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCCHHHHHHHHTTCCEECTHHHHHHHSC
T ss_pred CCCcCCCEEEEEecCCC-CHHHHHHHHHHCCCEEcCccccCccEEEECCCCCCCChHHHHHHHCCCcEEeHHHHHHHHhh
Confidence 45799999998765544 8999999999999999999987788888763 2466888888887 9999999
Q ss_pred ---HHHHHhcCccCCCCc
Q 001089 723 ---VLDCCSQKKLLQLQP 737 (1159)
Q Consensus 723 ---V~dCi~~~~lLp~~p 737 (1159)
+.+|+....++||..
T Consensus 87 ~~~~~~~i~k~~i~~w~~ 104 (113)
T 2cok_A 87 TKSLQELFLAHILSSWGA 104 (113)
T ss_dssp CSCHHHHHHHTBCSSCCC
T ss_pred chhHHHHHHHhcCCCCCC
Confidence 777888888888874
No 73
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=98.09 E-value=2.3e-06 Score=83.19 Aligned_cols=92 Identities=14% Similarity=0.190 Sum_probs=70.8
Q ss_pred CCCcccCeEEEEEcCC-CCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhH--------hHh-c-CC-Ceeec
Q 001089 653 ETSIFSDMVFYFVNVP-PAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYE--------AAK-R-RG-DVIHY 720 (1159)
Q Consensus 653 ~s~lF~G~~F~vv~~~-~~~~k~eLe~lI~~~GG~iv~n~~~~~Th~Ia~~~~~~k~~--------~a~-~-~~-~VV~p 720 (1159)
.+..|.|+.+||+.-. ....++-|++++.++||++...+++++||||+.+.....+. .+. . .+ .+|..
T Consensus 7 ~~~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~s~~~~~~~L~~~~~~l~~~~~~~~lLdi 86 (133)
T 2dun_A 7 GSTRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDACSSEATHVVMEETSAEEAVSWQERRMAAAPPGCTPPALLDI 86 (133)
T ss_dssp SSCSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSSCCTTCCEEEESSCCHHHHHHHHHHHHHHSCTTCCCCEEEEH
T ss_pred CccccCccEEEEecCCcCHHHHHHHHHHHHhcCCEeccccCCCceEEEecCCCHHHHHHHHHHhhcccCcCCCCcEEecc
Confidence 3479999999997532 23457888999999999999999999999998554332222 111 1 22 79999
Q ss_pred chHHHHHhcCccCCCCcccccccC
Q 001089 721 SWVLDCCSQKKLLQLQPKYYLHLS 744 (1159)
Q Consensus 721 ~WV~dCi~~~~lLp~~p~~~l~~s 744 (1159)
.|+.+|++.|+++|.+.+|+|...
T Consensus 87 sWltecm~~g~pV~~e~~~~l~~~ 110 (133)
T 2dun_A 87 SWLTESLGAGQPVPVECRHRLEVA 110 (133)
T ss_dssp HHHHHHHHHTSCCCCCTTTSCCCC
T ss_pred HHHHHHHhcCCcCCcccceEeecc
Confidence 999999999999999988888653
No 74
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.09 E-value=2.3e-06 Score=94.26 Aligned_cols=101 Identities=11% Similarity=0.119 Sum_probs=68.2
Q ss_pred CCCcCCCeEEEEcCCCCCCCC--------------c-hHHH---HHHHHHHHHHHHHhcCCEEEccCCC-------ceEE
Q 001089 799 KWSCFHGCCIYFYHSTEPLSP--------------D-WEVL---LGLALRRLKLEISFHGGKVCNNLAN-------ATHV 853 (1159)
Q Consensus 799 ~~~lF~gc~~yl~~~~~~~~~--------------d-~~~i---~~~~~~~l~~~I~~~GG~v~~~ls~-------vTHV 853 (1159)
...||.||.|+|.+....... | .+.. .......|+..|+.+||+++++++. +||+
T Consensus 12 ~~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~~t~L 91 (259)
T 1kzy_C 12 NKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQCLL 91 (259)
T ss_dssp STTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTCEEEE
T ss_pred CCcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCCCeEE
Confidence 356999999999876431000 0 0000 0013468899999999999998874 5899
Q ss_pred EEeccCCcccchhhHHHHHHHHhhhhccCCccEEecccHHHHHHHcCCccCCCCCCCCC
Q 001089 854 VVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKP 912 (1159)
Q Consensus 854 IV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~IVs~~WL~~ci~~g~~v~E~~Y~v~~ 912 (1159)
|.+... +. .+-++ .+ ...+.||++.||.+|++.+++++++.|.++.
T Consensus 92 Ia~~~~-rt--~K~l~-al---------a~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~~ 137 (259)
T 1kzy_C 92 IADQHC-RT--RKYFL-CL---------ASGIPCVSHVWVHDSCHANQLQNYRNYLLPA 137 (259)
T ss_dssp EESSCC-CS--HHHHH-HH---------HHTCCEEETHHHHHHHHHTSCCCGGGSBCCC
T ss_pred EcCCCC-Cc--HHHHH-HH---------hcCCCCccHHHHHHHHHcCCcCCHHHccCCC
Confidence 886532 22 22111 11 1357899999999999999999999999864
No 75
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=6.4e-06 Score=78.79 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=67.3
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCC-hhhHhHhcCC-CeeecchHHHHHhcC
Q 001089 654 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKG-LKYEAAKRRG-DVIHYSWVLDCCSQK 730 (1159)
Q Consensus 654 s~lF~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~~~~~Th~Ia~~~~~-~k~~~a~~~~-~VV~p~WV~dCi~~~ 730 (1159)
...|.|+.|||.+.....+|++++.+|.++||++...++..++|+|+++..+ -|+..|...+ +||+-+|++++++.+
T Consensus 20 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~sKl~KA~~lgI~IisE~~f~~ll~~~ 98 (112)
T 2ebu_A 20 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTM 98 (112)
T ss_dssp SSSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCSHHHHHHHHHTCEEEEHHHHHHHHHHS
T ss_pred CCCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEeccccCCeeEEEecCCCChHHHHHHHHcCCeEEeHHHHHHHHhhC
Confidence 3579999999987666779999999999999999999988889999887666 6888888887 999999999999753
No 76
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=98.01 E-value=7.3e-06 Score=89.32 Aligned_cols=92 Identities=22% Similarity=0.309 Sum_probs=65.1
Q ss_pred CcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEcc-----CC----------------------CceEE
Q 001089 801 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNN-----LA----------------------NATHV 853 (1159)
Q Consensus 801 ~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~-----ls----------------------~vTHV 853 (1159)
.+|+||.|||.+........ ...|..+|+.+||++.++ ++ +.|||
T Consensus 1 ~lF~g~~F~ls~~~~~~~~~--------k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~l 72 (241)
T 2vxb_A 1 LIFDDCVFAFSGPVHEDAYD--------RSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFV 72 (241)
T ss_dssp CTTTTEEEEECCCSSTTSSC--------HHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEE
T ss_pred CCCCCcEEEEecCCCCchhh--------HHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEE
Confidence 37999999999872111112 457899999999999886 21 13888
Q ss_pred EEeccCCcccchhhHHHHHHHHhhhhccCCccEEecccHHHHHHHcCCccCCCCCCCCCC
Q 001089 854 VVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPT 913 (1159)
Q Consensus 854 IV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~IVs~~WL~~ci~~g~~v~E~~Y~v~~~ 913 (1159)
|.+... ... +-++ .+ ...+.||+++||.+|++.+++++.++|++...
T Consensus 73 ia~~~~-rt~--K~~~-al---------a~gipiV~~~Wi~dc~~~~~~~~~~~ylL~~~ 119 (241)
T 2vxb_A 73 VSDTFS-RKV--KYLE-AL---------AFNIPCVHPQFIKQCLKMNRVVDFSPYLLASG 119 (241)
T ss_dssp ECSSCC-CCH--HHHH-HH---------HHTCCEECTHHHHHHHHHTSCCCSGGGBBEEE
T ss_pred EcCCCC-CcH--HHHH-HH---------HcCCCEecHHHHHHHHHcCCcCChhhccCCCC
Confidence 886432 221 2111 11 23579999999999999999999999998643
No 77
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=97.99 E-value=2.6e-06 Score=64.80 Aligned_cols=34 Identities=35% Similarity=0.653 Sum_probs=26.9
Q ss_pred hhhhhhhhcccccCCCcccCCChhHHHHHhhccC
Q 001089 746 SSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVD 779 (1159)
Q Consensus 746 ~t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~~ 779 (1159)
+|++.+++++|+|||||++++++++|+.+|.+|.
T Consensus 2 ~t~~~~~~n~D~yGDSY~rd~t~~eLk~il~~m~ 35 (37)
T 1ik9_C 2 STKEHFAREYDCYGDSYFIDTDLNQLKEVFSGIK 35 (37)
T ss_dssp ------CCSBCTTSCBSSSCCCHHHHHHHHHTCC
T ss_pred cHHHHHHHhcccccccccCcCCHHHHHHHHHHcc
Confidence 5778899999999999999999999999999885
No 78
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=97.97 E-value=1.3e-05 Score=87.14 Aligned_cols=87 Identities=20% Similarity=0.162 Sum_probs=63.8
Q ss_pred CCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEc--cCC-CceEEEEeccCCcccchhhHHHHHHHHhhhh
Q 001089 803 FHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCN--NLA-NATHVVVLSVLGYDVNFNSLTESFTAREKHL 879 (1159)
Q Consensus 803 F~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~--~ls-~vTHVIV~~~~~~~~~~~~l~~~l~~~~~~~ 879 (1159)
-++.+|.|+++.. .....+...|+.+||++++ ..+ +|||+|++... +. .+-+. .+
T Consensus 7 ~~~~~~~~Sg~~~-----------~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~-RT--~K~l~-ai------- 64 (235)
T 3al2_A 7 KKQYIFQLSSLNP-----------QERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPL-RN--EKYLA-SV------- 64 (235)
T ss_dssp -CCCEEEEESCCH-----------HHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCC-CS--HHHHH-HH-------
T ss_pred CCCEEEEEcCCCH-----------HHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCC-CC--HHHHH-HH-------
Confidence 3577889998652 1245688999999999986 354 69999998642 22 22111 11
Q ss_pred ccCCccEEecccHHHHHHHcCCccCCCCCCCCCC
Q 001089 880 LWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPT 913 (1159)
Q Consensus 880 ~~~~~~~IVs~~WL~~ci~~g~~v~E~~Y~v~~~ 913 (1159)
.....||+++||.+|+++|+.++|++|.+..+
T Consensus 65 --a~G~wIvs~~wl~~s~~~g~~l~E~~ye~~~~ 96 (235)
T 3al2_A 65 --AAGKWVLHRSYLEACRTAGHFVQEEDYEWGSS 96 (235)
T ss_dssp --HTTCEEECTHHHHHHHHHTSCCCSGGGBTTSH
T ss_pred --HcCCcCccHHHHHHHHHcCCCCChhceeecCc
Confidence 13568999999999999999999999987764
No 79
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=97.93 E-value=9.1e-06 Score=87.32 Aligned_cols=83 Identities=18% Similarity=0.223 Sum_probs=62.5
Q ss_pred CCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCCCceEEEEeccCCcccchhhHHHHHHHHhhhhccCC
Q 001089 804 HGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNK 883 (1159)
Q Consensus 804 ~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~vTHVIV~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 883 (1159)
++.+|.|.|+.+.. ....|+.+||+++++.++|||+|++... +. .+ +...+ ..
T Consensus 7 ~~~~v~fSG~~~~~--------------~~~~i~~lGg~v~~~~~~~THlV~~~~~-RT--~K-~l~Ai---------a~ 59 (220)
T 3l41_A 7 KRVYITFTGYDKKP--------------SIDNLKKLDMSITSNPSKCTHLIAPRIL-RT--SK-FLCSI---------PY 59 (220)
T ss_dssp CCEEEEECSCSSCC--------------CCGGGGGGTEEECSCTTTCSEEECSSCC-CB--HH-HHHHG---------GG
T ss_pred ceEEEEEeccCCCC--------------CcchHhhcceeeccCchhhhhhhhhhHh-hh--cc-eeecC---------CC
Confidence 46788999987521 1558999999999999899999997532 22 22 11122 23
Q ss_pred ccEEecccHHHHHHHcCCccCCCCCCCCCC
Q 001089 884 KLHVVRSQWLEDCLAKEQKSEEYEYSLKPT 913 (1159)
Q Consensus 884 ~~~IVs~~WL~~ci~~g~~v~E~~Y~v~~~ 913 (1159)
.+.||+++||.+|++.|+.++|++|.+..+
T Consensus 60 g~~IVs~~Wl~~~~~~~~~l~e~~y~l~d~ 89 (220)
T 3l41_A 60 GPCVVTMDWINSCLKTHEIVDEEPYLLNDP 89 (220)
T ss_dssp CCEEECHHHHHHHHHHTSCCCSGGGBCCCH
T ss_pred CCeEEEhHHHHhhhhhhhccccCccccCCc
Confidence 469999999999999999999999988643
No 80
>2hvq_A ORF1, hypothetical 37.6 kDa protein in GP24-HOC intergenic region; RNA, ligase, lysine adenylate; HET: APK; 2.40A {Enterobacteria phage T4} PDB: 2hvr_A* 2hvs_A*
Probab=97.67 E-value=0.0003 Score=80.04 Aligned_cols=107 Identities=12% Similarity=0.070 Sum_probs=70.0
Q ss_pred hcCCCcEEEEEecceEEEEEEEeCCEEEEEecCCCCcCc----chhhHHH-------HHHHhcc---cCceeecceEEEE
Q 001089 241 KLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE----YGHAMSK-------IIEQNVL---VDRCILDGEMLVW 306 (1159)
Q Consensus 241 k~~~~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~t~----~~p~l~~-------~l~~~~~---~~~~ILDGElv~~ 306 (1159)
.+.+..|++++|+||..+-+...++++.++||++.-.+. .+..+.. .+...+. ..+++|=||++..
T Consensus 25 ~l~~~~vvvtEKlDG~N~~i~~~~~~i~~~sR~~~l~~~~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~i~GE~~G~ 104 (335)
T 2hvq_A 25 GLTGGEWVAREXIHGTNFSLIIERDKVTCAKRTGPILPAEDFFGYEIILKNYADSIKAVQDIMETSAVVSYQVFGEFAGP 104 (335)
T ss_dssp TCSCSCEEEEECCSSEEEEEEEETTEEEEEETTEECCTTCCCTTTHHHHHHHHHHHHHHHTTHHHHTEEEEEEEEEEESB
T ss_pred ccCCCcEEEEEEecCcceEEEEECCEEEEecCCcccCCccccchHHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEccC
Confidence 355678999999999999999999999999999864321 1111111 1111121 2689999999863
Q ss_pred eCCCCcccccccHHHHHHHhhcCCCCCCCeEEEEEeee-ecCCccccCCCHHHHHHHHHHh
Q 001089 307 DTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVL-YVGDTSVIHQSLKERHELLQKV 366 (1159)
Q Consensus 307 d~~~~~~~pFg~lq~i~~~~r~~~~~~~~~~~~vFDiL-~lnG~~l~~~pl~eRr~~L~~~ 366 (1159)
. + ..++.-. +..|++|||. ..++..-.-+|..+|+++++.+
T Consensus 105 ~-----I-------------q~~i~Y~-~~~FyvFDI~~~~~~~~~~~l~~~~~~~l~~~~ 146 (335)
T 2hvq_A 105 G-----I-------------QKNVDYG-DKDFYVFDIIVTTESGDVTYVDDYMMESFCNTF 146 (335)
T ss_dssp T-----T-------------BSSCCCC-SSEEEEEEEEEEETTCCEEECCHHHHHHHHHHH
T ss_pred c-----c-------------cCCcccC-CCeEEEEEEEEecCCCceeeCCHHHHHHHHHHc
Confidence 2 0 0111112 4589999997 3333222347999999999885
No 81
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=97.61 E-value=5.6e-05 Score=85.32 Aligned_cols=172 Identities=20% Similarity=0.219 Sum_probs=105.7
Q ss_pred cEEEEEecceEEEEEEEeCCE-EEEEec----CCCCcCcchhhHHHHHHHhc-ccCceeecceEEEEeCC----------
Q 001089 246 EVVIECKFDGDRIQIHKNGSE-IHYFSR----SFLDHSEYGHAMSKIIEQNV-LVDRCILDGEMLVWDTS---------- 309 (1159)
Q Consensus 246 ~~~vE~K~DGeR~qih~~g~~-v~~fSR----~g~d~t~~~p~l~~~l~~~~-~~~~~ILDGElv~~d~~---------- 309 (1159)
.|++|+|+||..+.+.+.+|. ++..|| .|+|+|.-...|... -..+ .+..+.+-||++.-...
T Consensus 114 ~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~I-P~~L~~p~~leVRGEv~m~~~~F~~lN~~~~~ 192 (332)
T 1ta8_A 114 AYCCELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSV-PMRLTEPISVEVRGECYMPKQSFVALNEEREE 192 (332)
T ss_dssp CEEEEEEECSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHTTCTTS-CSBCSSCCCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred eEEEeeeecceEEEEEEECCEEEEEEcCCCCccchhHHHHHHHhcCC-ccccCCCCeEEEEEEEEEEHHHHHHHHHHHHh
Confidence 599999999999999998877 799999 688888643222110 0011 13458899999873210
Q ss_pred CCcccccccHHHHH-HHhhcCCC----CCCCeEEEEEeeeecCCccccCCCHHHHHHHHHHhhccCCCcceeeccCCCCC
Q 001089 310 LNRFAEFGSNQEIA-KAARDGLS----SDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLN 384 (1159)
Q Consensus 310 ~~~~~pFg~lq~i~-~~~r~~~~----~~~~~~~~vFDiL~lnG~~l~~~pl~eRr~~L~~~i~~~~~~~~i~~p~~~~~ 384 (1159)
.|. .+|..-+..+ ...| ..+ ..+++.|++|++...+|.. -.+..++.+.|..+-=+...
T Consensus 193 ~g~-~~faNPRNaAAGsLr-qld~~ita~R~L~ff~y~i~~~~~~~--~~t~~e~l~~L~~~GF~v~~------------ 256 (332)
T 1ta8_A 193 NGQ-DIFANPRNAAAGSLR-QLDTKIVAKRNLNTFLYTVADFGPMK--AKTQFEALEELSAIGFRTNP------------ 256 (332)
T ss_dssp TTC-CCCSSHHHHHHHHHT-CSBHHHHHTSCCEEEEEEESCCTTCC--CSBHHHHHHHHHHTTCCCCT------------
T ss_pred cCC-ccccChHHHHHHHHH-ccChhhHhhCCCEEEEEecccccCCC--CCCHHHHHHHHHHcCCCCCC------------
Confidence 000 1232212111 1111 111 2468999999996444433 26899999999887433211
Q ss_pred ccccCCCCCccceecCCHHHHHHHHHHHHHc------CCceEEEecCCCCCcC----CCCCCCe---EEEccc
Q 001089 385 SHVRPQGEPCWSLVAHNVDEVEKFFKETIEN------RDEGIVLKDLGSKWEP----GDRSGKW---LKLKPE 444 (1159)
Q Consensus 385 ~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~------g~EGlVlK~~ds~Y~p----GkRs~~W---lKiKpe 444 (1159)
....+.+.+++.++++.+.+. .-.|||+|--+-.|.. ..|.+.| +|+.++
T Consensus 257 ----------~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~tsk~PRWAiAyKfpae 319 (332)
T 1ta8_A 257 ----------ERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFALQDELGFTVKAPRWAIAYKFPPE 319 (332)
T ss_dssp ----------TCEEESSHHHHHHHHHHHHHTGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEEECC--
T ss_pred ----------cceEeCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEecCHHHHHHhCCcCCCCCceeEecCCCc
Confidence 023467899999999998765 5689999976655542 3466677 455443
No 82
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.61 E-value=3.6e-05 Score=70.14 Aligned_cols=80 Identities=16% Similarity=0.318 Sum_probs=57.9
Q ss_pred CCCcccCeEEEEEcCCC----CCChHHHHHHHHHcCCEEEecCCCCc--eEEEEecCCChhhHhHhcCCCeeecchHHHH
Q 001089 653 ETSIFSDMVFYFVNVPP----AYSLDSLHKMVVENGGTFSMNLNNSV--THCVAADNKGLKYEAAKRRGDVIHYSWVLDC 726 (1159)
Q Consensus 653 ~s~lF~G~~F~vv~~~~----~~~k~eLe~lI~~~GG~iv~n~~~~~--Th~Ia~~~~~~k~~~a~~~~~VV~p~WV~dC 726 (1159)
...+|+|+.||+-.+.. ....++|+++|..|||+++..+.... .+.|++--++. .-|.|+|.+|.+|
T Consensus 8 ~~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpyN~t-------~LpTVtpTYI~aC 80 (106)
T 2l42_A 8 SGPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRESKENVFIVSPYNHT-------NLPTVTPTYIKAC 80 (106)
T ss_dssp SSCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTTCCC-------SSSBCCTTHHHHH
T ss_pred cCccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCcccccCCeEEEeCCCCC-------CCccccHHHHHHH
Confidence 34579999999854432 24589999999999999987764321 23333221111 2299999999999
Q ss_pred HhcCccCCCCccc
Q 001089 727 CSQKKLLQLQPKY 739 (1159)
Q Consensus 727 i~~~~lLp~~p~~ 739 (1159)
|..+.||++++|-
T Consensus 81 ~~~nTLLnv~~YL 93 (106)
T 2l42_A 81 CQSNSLLNMENYL 93 (106)
T ss_dssp HHSTTSCGGGGCC
T ss_pred HhcCceecccccc
Confidence 9999999999863
No 83
>1s68_A RNA ligase 2; ribonucleic acid ligase, RNA repair; HET: AMP; 1.90A {Enterobacteria phage T4} SCOP: d.142.2.4
Probab=97.60 E-value=0.00026 Score=77.40 Aligned_cols=107 Identities=14% Similarity=0.084 Sum_probs=69.6
Q ss_pred hcCCCcEEEEEecceEEEEEEEeCCEEEEEecCCCCcC--c--chhhHHH-------HHHHhcc---cCceeecceEEEE
Q 001089 241 KLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHS--E--YGHAMSK-------IIEQNVL---VDRCILDGEMLVW 306 (1159)
Q Consensus 241 k~~~~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~t--~--~~p~l~~-------~l~~~~~---~~~~ILDGElv~~ 306 (1159)
.+.+.+|.+++|+||.-+-|...++++.++||++.-.+ . .+..+.. .+.+.+. ..+++|=||++..
T Consensus 24 ~~~~~~vvvtEKldG~N~~i~~~~~~i~~~sR~~~l~~~~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~GE~~G~ 103 (249)
T 1s68_A 24 GLTGGEWVAREKIHGTNFSLIIERDKVTCAKRTGPILPAEDFFGYEIILKNYADSIKAVQDIMETSAVVSYQVFGEFAGP 103 (249)
T ss_dssp TCSCSCEEEEECCCSEEEEEEEESSCEEEEETTEECCTTCCCTTTHHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEEST
T ss_pred ccCCCCEEEEEEECCcceEEEEECCEEEEEeCCcccCCCCccchHHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEEccc
Confidence 35567899999999999999889889999999986422 1 1111111 1112121 2689999999863
Q ss_pred eCCCCcccccccHHHHHHHhhcCCCCCCCeEEEEEeee-ecCCccccCCCHHHHHHHHHHh
Q 001089 307 DTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVL-YVGDTSVIHQSLKERHELLQKV 366 (1159)
Q Consensus 307 d~~~~~~~pFg~lq~i~~~~r~~~~~~~~~~~~vFDiL-~lnG~~l~~~pl~eRr~~L~~~ 366 (1159)
. + | .++.-. +..|++|||. ..++....-++..+|+++++.+
T Consensus 104 ~-----I------q-------~~v~Y~-~~~FyvFdI~~~~~~g~~~~l~~~~~~~l~~~~ 145 (249)
T 1s68_A 104 G-----I------Q-------KNVDYC-DKDFYVFDIIVTTESGDVTYVDDYMMESFCNTF 145 (249)
T ss_dssp T-----T------S-------SSCCCC-SCEEEEEEEEEEETTCCEEECCHHHHHHHHHHH
T ss_pred c-----c------c-------CCcccC-CCeEEEEEEEEecCCCccccCCHHHHHHHHHHC
Confidence 2 0 0 111112 4589999996 4333223346999999999885
No 84
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.40 E-value=8.4e-05 Score=67.77 Aligned_cols=88 Identities=15% Similarity=0.224 Sum_probs=64.7
Q ss_pred CCcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCCC--ceEEEEeccCCcccchhhHHHHHHHHhh
Q 001089 800 WSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN--ATHVVVLSVLGYDVNFNSLTESFTAREK 877 (1159)
Q Consensus 800 ~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls~--vTHVIV~~~~~~~~~~~~l~~~l~~~~~ 877 (1159)
...|+|..|||...+...+.- ...+.|.++|+.+||+|...+.. ..++.|.++- .
T Consensus 9 ~~vF~g~~Fyin~d~~a~ds~------~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpy------N----------- 65 (106)
T 2l42_A 9 GPPLSNMKFYLNRDADAHDSL------NDIDQLARLIRANGGEVLDSKPRESKENVFIVSPY------N----------- 65 (106)
T ss_dssp SCSSCCCCBEECCSSSCSSCS------STHHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTT------C-----------
T ss_pred CccccCcEEEEcCCCccchhh------hHHHHHHHHHHhcCcEEhhhCcccccCCeEEEeCC------C-----------
Confidence 456999999999854321111 12468999999999999999873 3333333321 1
Q ss_pred hhccCCccEEecccHHHHHHHcCCccCCCCCCCCCCC
Q 001089 878 HLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTG 914 (1159)
Q Consensus 878 ~~~~~~~~~IVs~~WL~~ci~~g~~v~E~~Y~v~~~~ 914 (1159)
...+.+|++.+|.+|+..+++++-.+|+++...
T Consensus 66 ----~t~LpTVtpTYI~aC~~~nTLLnv~~YLvp~d~ 98 (106)
T 2l42_A 66 ----HTNLPTVTPTYIKACCQSNSLLNMENYLVPYDN 98 (106)
T ss_dssp ----CCSSSBCCTTHHHHHHHSTTSCGGGGCCBCSCC
T ss_pred ----CCCCccccHHHHHHHHhcCceecccccccCchh
Confidence 235678999999999999999999999998875
No 85
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=97.39 E-value=0.00014 Score=81.63 Aligned_cols=167 Identities=20% Similarity=0.189 Sum_probs=102.3
Q ss_pred CcEEEEEecceEEEEEEEeCC-EEEEEec----CCCCcCcchhhHHHHHHHhc-ccCceeecceEEEEeCC---------
Q 001089 245 KEVVIECKFDGDRIQIHKNGS-EIHYFSR----SFLDHSEYGHAMSKIIEQNV-LVDRCILDGEMLVWDTS--------- 309 (1159)
Q Consensus 245 ~~~~vE~K~DGeR~qih~~g~-~v~~fSR----~g~d~t~~~p~l~~~l~~~~-~~~~~ILDGElv~~d~~--------- 309 (1159)
-.|++|+|+||..+.+++.+| =++..|| .|+|+|.-...|... -..+ .+..+.+-||++.-...
T Consensus 107 ~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~I-P~~L~~p~~levRGEv~m~~~~F~~lN~~~~ 185 (318)
T 1b04_A 107 AAYVCELAIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSL-PLRLKEPVSLEARGEAFMPKASFLRLNEERK 185 (318)
T ss_dssp CCEEEEEEESSEEEEEEEETTEEEEEEECTTSSCEEBCHHHHHTCTTS-CSBCSSCCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred ceEEEEEecccEEEEEEEECCEEEEEEccCCCcccHHHHHhHHHhcCC-CcccCCCCeEEEEEEEEEEHHHHHHHHHHHH
Confidence 359999999999999998777 5789999 788988643222110 0011 13458899999873210
Q ss_pred -CCcccccccHHHHH-HHhhcCCC----CCCCeEEEEEeeeecCCccccCCCHHHHHHHHHHhhccCCCcceeeccCCCC
Q 001089 310 -LNRFAEFGSNQEIA-KAARDGLS----SDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGL 383 (1159)
Q Consensus 310 -~~~~~pFg~lq~i~-~~~r~~~~----~~~~~~~~vFDiL~lnG~~l~~~pl~eRr~~L~~~i~~~~~~~~i~~p~~~~ 383 (1159)
.|. .+|..-+..+ ...| ..+ ..+++.|++|++...+|.. -.+..++.+.|..+-=+....
T Consensus 186 ~~g~-~~faNpRNaAAGsLr-qld~~ita~R~L~ff~y~~~~~~~~~--~~t~~e~l~~L~~~Gf~v~~~---------- 251 (318)
T 1b04_A 186 ARGE-ELFANPRNAAAGSLR-QLDPKVAASRQLDLFVYGLADAEALG--IASHSEALDYLQALGFKVNPE---------- 251 (318)
T ss_dssp HC---CCCSCHHHHHHHHHH-SSCHHHHHHTCCEEEEEEETTTTTTT--CCBHHHHHHHHHHTTCCCCTT----------
T ss_pred HcCC-CccchhhHHHHHHHH-ccChhhHhhCCCEEEEEecccccCCC--CCCHHHHHHHHHHcCCCCCCc----------
Confidence 000 1232211111 1111 111 1368999999996433422 268999999998874332110
Q ss_pred CccccCCCCCccceecCCHHHHHHHHHHHHH------cCCceEEEecCCCCCcC----CCCCCCe
Q 001089 384 NSHVRPQGEPCWSLVAHNVDEVEKFFKETIE------NRDEGIVLKDLGSKWEP----GDRSGKW 438 (1159)
Q Consensus 384 ~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~------~g~EGlVlK~~ds~Y~p----GkRs~~W 438 (1159)
...+.+.+++.++++++.+ -.-.|||+|--+-.|.. ..|.+.|
T Consensus 252 ------------~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~t~k~PRW 304 (318)
T 1b04_A 252 ------------RRRCANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDSFAQQRALGATAKSPRW 304 (318)
T ss_dssp ------------CEEESSHHHHHHHHHHHHHHSTTCSSCEEEEEEEECBHHHHHHHCCCSSSCTT
T ss_pred ------------ceEeCCHHHHHHHHHHHHHHHhhCCCCCCcEEEEecCHHHHHHhCCcCCCCCc
Confidence 2346789999999998865 35589999976655542 3466777
No 86
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=97.26 E-value=0.0025 Score=68.44 Aligned_cols=174 Identities=13% Similarity=0.112 Sum_probs=105.0
Q ss_pred EcCCCCCChHHHHH-HHHHcCCEEEecCCC--CceEEEEecC-CChhhHhHhcCCC---eeecchHHHHHhc---Cc---
Q 001089 665 VNVPPAYSLDSLHK-MVVENGGTFSMNLNN--SVTHCVAADN-KGLKYEAAKRRGD---VIHYSWVLDCCSQ---KK--- 731 (1159)
Q Consensus 665 v~~~~~~~k~eLe~-lI~~~GG~iv~n~~~--~~Th~Ia~~~-~~~k~~~a~~~~~---VV~p~WV~dCi~~---~~--- 731 (1159)
+.|.....+++... .+...|=.++++... .++|+||=.. .|.|+-.+...+| ||+|+||.+|++. |+
T Consensus 27 ~TGc~~~~~~~~D~~~Lr~LGI~Iv~d~~~~~~~n~LiAPkilRT~KFL~sLa~~P~~~il~p~FI~~~Lk~ih~~~~~~ 106 (256)
T 3t7k_A 27 CTGCFHDGFNEVDIEILNQLGIKIFDNIKETDKLNCIFAPKILRTEKFLKSLSFEPLKFALKPEFIIDLLKQIHSKKDKL 106 (256)
T ss_dssp ESSSCSSCCCHHHHHHHHHTTEEECSSCCGGGCCCEEECSSCCCBHHHHHHTTSTTCCEEECTHHHHHHHHHHC------
T ss_pred ecCCcccccCHHHHHHHHHcCeEEEecCcccCCCCEEEcCchhhHHHHHHHhccCccceEeCHHHHHHHHHHhhcCCccc
Confidence 44544124455544 556788888888742 5888886332 6788877777765 8999999999987 76
Q ss_pred ---cCCCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhccCCCCCcchhHHHhhhcCCCCCCCcCCCe--
Q 001089 732 ---LLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGC-- 806 (1159)
Q Consensus 732 ---lLp~~p~~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~~~s~~~~~i~~l~~~~~~~~~~~lF~gc-- 806 (1159)
++++++|.+ .+++.+.+ .+ ...+..||.++
T Consensus 107 ~~~~l~~~dY~L-----------------------~d~~~E~l----~r------------------~~~~gkLf~~~~I 141 (256)
T 3t7k_A 107 SQININLFDYEI-----------------------NGINESII----SK------------------TKLPTKVFERANI 141 (256)
T ss_dssp -CCCCCSSTTBC-----------------------TTCCHHHH----HH------------------TTSSSCHHHHTTC
T ss_pred ccccCChhhccC-----------------------CCcchhHH----hh------------------hccccccccCCcc
Confidence 666655421 12222222 11 11346789998
Q ss_pred -EEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC---------------------CceEEEEeccCCcccc
Q 001089 807 -CIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA---------------------NATHVVVLSVLGYDVN 864 (1159)
Q Consensus 807 -~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls---------------------~vTHVIV~~~~~~~~~ 864 (1159)
+|++...-+.. .+.++.++..|||.=+..+. ...+|++....++
T Consensus 142 ~ciNls~dI~GG-----------~e~issIleahG~~~~~~l~~~~~~~~dl~~n~~~~~~~~~~~~~ILia~K~~q--- 207 (256)
T 3t7k_A 142 RCINLVNDIPGG-----------VDTIGSVLKAHGIEKINVLRSKKCTFEDIIPNDVSKQENGGIFKYVLIVTKASQ--- 207 (256)
T ss_dssp CEEEEETTCTTC-----------HHHHHHHHHHTTCCEEEEECTTTCCGGGCCCCC--------CCSEEEECSCHHH---
T ss_pred eeeeeccCCCCC-----------HHHHHHHHHHcCCceeeecccccccHHHhhhccccccccCCCCCEEEEEccHHH---
Confidence 77778754321 35778899999996444221 1347777653321
Q ss_pred hhhHHHHHHHHhhhhccCCccEEecccHHHHHHHcCC
Q 001089 865 FNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQ 901 (1159)
Q Consensus 865 ~~~l~~~l~~~~~~~~~~~~~~IVs~~WL~~ci~~g~ 901 (1159)
.+..++.+. ....+...-+|..+|...||....
T Consensus 208 ~k~Fkk~~~----~~~~n~~~lvveWdWCVksIF~le 240 (256)
T 3t7k_A 208 VKKFTKLIN----DRDKNETILIVEWNWCVESIFHLN 240 (256)
T ss_dssp HHHHHHHHH----HHSTTSCEEEECHHHHHHHHHTTS
T ss_pred HHHHHHHhh----cccccceEEEEEcHHHHHHHhhee
Confidence 222222222 112346789999999999998754
No 87
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae}
Probab=97.12 E-value=0.0008 Score=75.47 Aligned_cols=155 Identities=21% Similarity=0.226 Sum_probs=92.6
Q ss_pred CCCcEEEEEecceEEEEEEEeCCE-EEEEecC----CCCcCcchhhHHHHHHHhc-ccCceeecceEEEEeCC-------
Q 001089 243 HGKEVVIECKFDGDRIQIHKNGSE-IHYFSRS----FLDHSEYGHAMSKIIEQNV-LVDRCILDGEMLVWDTS------- 309 (1159)
Q Consensus 243 ~~~~~~vE~K~DGeR~qih~~g~~-v~~fSR~----g~d~t~~~p~l~~~l~~~~-~~~~~ILDGElv~~d~~------- 309 (1159)
....|++|+|+||.-+.+.+.+|. ++..||. |+|+|+-...+.. |-..+ ....+.+=||++.-...
T Consensus 100 ~~~~~~~epKiDGlavsL~Y~~G~L~~a~TRGDG~~GeDiT~n~~tI~~-IP~~l~~~~~levRGEv~m~~~~F~~~n~~ 178 (305)
T 4glw_A 100 AHPTYICELKIDGLSISLTYEKGILVAGVTRGDGSIGENITENLKRVKD-IPLTLPEELDITVRGECYMPRASFDQVNQA 178 (305)
T ss_dssp SSCCEEEEEEECSEEEEEEEETTEEEEEEECTTSSEEEECHHHHTTSTT-SCSBCSSCCCEEEEEEEECCHHHHHHHHHH
T ss_pred CCCcEEEEeeecceEEEEEEeCCeEEEEEecCCCcchhhHHHHHhhccC-CcccCCCcccccccceEEeehhhHHHHHHH
Confidence 455799999999999998887665 7899998 8888853221110 00011 13457888999862100
Q ss_pred ---CCcccccccHHHHHH-HhhcCCC----CCCCeEEEEEeeeecCCccccCCCHHHHHHHHHHhhccCCCcceeeccCC
Q 001089 310 ---LNRFAEFGSNQEIAK-AARDGLS----SDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDH 381 (1159)
Q Consensus 310 ---~~~~~pFg~lq~i~~-~~r~~~~----~~~~~~~~vFDiL~lnG~~l~~~pl~eRr~~L~~~i~~~~~~~~i~~p~~ 381 (1159)
.+ -.+|..-+..+. ..+ ..+ ..+++.|++|++...+|. ....++.+.|.++-=+.. |
T Consensus 179 ~~~~g-~~~faNpRNaaAGslr-q~d~~~~~~r~L~f~~y~~~~~~~~----~s~~e~l~~L~~~Gf~~~-------~-- 243 (305)
T 4glw_A 179 RQENG-EPEFANPRNAAAGTLR-QLDTAVVAKRNLATFLYQEASPSTR----DSQEKGLKYLEQLGFVVN-------P-- 243 (305)
T ss_dssp HHHTT-CCCCSSHHHHHHHHHS-SSBHHHHHHSCCEEEEEEESSSCSS----SBHHHHHHHHHHHTCCCC-------C--
T ss_pred HHhcC-CccchhhhHHHhhhhh-ccCchhhhhhcceEEEeeecccccc----chHHHHHHHHHhCCCccC-------C--
Confidence 00 012322122111 111 111 135799999999876653 367888888887622111 1
Q ss_pred CCCccccCCCCCccceecCCHHHHHHHHHHHHHcC----C--ceEEEecCC
Q 001089 382 GLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENR----D--EGIVLKDLG 426 (1159)
Q Consensus 382 ~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g----~--EGlVlK~~d 426 (1159)
....+.+.+++.+++++..+.+ + .|||+|--+
T Consensus 244 -------------~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGiVikvn~ 281 (305)
T 4glw_A 244 -------------KRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVND 281 (305)
T ss_dssp -------------CCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEECB
T ss_pred -------------ceEEeCCHHHHHHHHHHHHHHhhcCCCCCCeEEEEEeC
Confidence 1234678899999988876543 2 399999533
No 88
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=96.93 E-value=0.0024 Score=77.38 Aligned_cols=225 Identities=18% Similarity=0.236 Sum_probs=127.4
Q ss_pred CcEEEEEecceEEEEEEEeCCE-EEEEecC----CCCcCcchhhHHHHHHHhc----ccCceeecceEEEEeCC------
Q 001089 245 KEVVIECKFDGDRIQIHKNGSE-IHYFSRS----FLDHSEYGHAMSKIIEQNV----LVDRCILDGEMLVWDTS------ 309 (1159)
Q Consensus 245 ~~~~vE~K~DGeR~qih~~g~~-v~~fSR~----g~d~t~~~p~l~~~l~~~~----~~~~~ILDGElv~~d~~------ 309 (1159)
-.|++|+|+||.-+.+.+.+|. ++..||. |+|+|+....+... -..+ .+..+.+=||++.-...
T Consensus 108 ~~~~~epKiDGlavsL~Ye~G~Lv~a~TRGDG~~GeDiT~nvrtI~~I-Pl~l~~~~~p~~leVRGEv~m~~~~F~~ln~ 186 (586)
T 4glx_A 108 VTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAI-PLKLHGENIPARLEVRGEVFLPQAGFEKINE 186 (586)
T ss_dssp -CEEEEEEESSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHTTCTTS-CSBCCSSSCCSEEEEEEEEECCHHHHHHHHH
T ss_pred ceEEEEEeecceEEEEEEeCCEEEEEEccCCCcccccHHHHHHhccCc-ccccccCCCCceEEEEEEEEEEhhhccccch
Confidence 4699999999999998887776 7899994 78888532111100 0001 13457788999862100
Q ss_pred ----CCcccccccHHHHHHHhhcCCC----CCCCeEEEEEeeeecCCccccCCCHHHHHHHHHHhhccCCCcceeeccCC
Q 001089 310 ----LNRFAEFGSNQEIAKAARDGLS----SDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDH 381 (1159)
Q Consensus 310 ----~~~~~pFg~lq~i~~~~r~~~~----~~~~~~~~vFDiL~lnG~~l~~~pl~eRr~~L~~~i~~~~~~~~i~~p~~ 381 (1159)
.+ -.+|..-+..+...-+..+ ..+++.|++|++....|..+. ....++.+.|.++-=+...
T Consensus 187 ~~~~~g-~~~faNpRNaaAGslrqld~~~~a~r~L~f~~y~v~~~~~~~~~-~t~~e~l~~L~~~Gf~v~~--------- 255 (586)
T 4glx_A 187 DARRTG-GKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELP-DTHLGRLLQFKKWGLPVSD--------- 255 (586)
T ss_dssp HHHHTT-CCCCSCHHHHHHHHHTCSCHHHHHTSCCEEEEEEEEEEESSCCC-SBHHHHHHHHHHTTCCCCT---------
T ss_pred hhhhcc-CccchhhHHHHhccccccchhhhhccccceeEeeeeeeeccccc-ccHHHHHHHHHHcCCCCcc---------
Confidence 00 0123222221111101111 236799999999888775432 4678899988876222110
Q ss_pred CCCccccCCCCCccceecCCHHHHHHHHHHHHHcC------CceEEEecCCCCCcC--C--CCCCCe---EEEccccccc
Q 001089 382 GLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENR------DEGIVLKDLGSKWEP--G--DRSGKW---LKLKPEYIRA 448 (1159)
Q Consensus 382 ~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g------~EGlVlK~~ds~Y~p--G--kRs~~W---lKiKpey~~~ 448 (1159)
....+.+.+++.+++++....+ -.|||+|--+-.+.. | .+++.| +|+.++
T Consensus 256 -------------~~~~~~~~~~~~~~~~~~~~~R~~l~y~iDGiVikvn~~~~~~~lG~ts~~PrwAiA~Kfp~e---- 318 (586)
T 4glx_A 256 -------------RVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARAPRWAVAFKFPAQ---- 318 (586)
T ss_dssp -------------TCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEECCCCC----
T ss_pred -------------ceeeeccHHHHHHHHHHHHHhhhcccccCCceEEEecchhhhhccCCccCCCCeeEEEcccch----
Confidence 1234678899999888876544 389999954433321 2 356677 455443
Q ss_pred CCcccEEEEEEEeCCCCCCCccceEEEEEecCCCCCCCCceEEEEEEecCCCCHHHHHHHH
Q 001089 449 GSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVV 509 (1159)
Q Consensus 449 g~~lDlvVIG~~~G~Grr~g~~gsfllg~~d~~~~~~~~~~f~~v~kVgtG~sdeel~~l~ 509 (1159)
..--.|.+-.|..|| .|.+.-. |..++-.- .+ .+|.++ |..+.++.+.+.
T Consensus 319 --~~~T~v~~I~~qVGR-TG~iTPv--A~lePV~l---~G--~tVsra-TLhN~~~I~~~d 368 (586)
T 4glx_A 319 --EQMTFVRDVEFQVGR-TGAITPV--ARLEPVHV---AG--VLVSNA-TLHNADEIERLG 368 (586)
T ss_dssp --EEEEEEEEEEEEECT-TSBEEEE--EEEEEEEE---TT--EEEEEE-ECCCHHHHHHHT
T ss_pred --hheeEeEEEEEecCC-ceEEEEE--EEEeeEEe---CC--EEEEec-ccCCHHHHHhcC
Confidence 455577777787775 4444332 22222100 01 234444 778888877653
No 89
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=96.83 E-value=0.00018 Score=81.05 Aligned_cols=167 Identities=16% Similarity=0.153 Sum_probs=101.0
Q ss_pred CcEEEEEecceEEEEEEEeCC-EEEEEec----CCCCcCcchhhHHHHHHHhc---c----cCceeecceEEEEeCC---
Q 001089 245 KEVVIECKFDGDRIQIHKNGS-EIHYFSR----SFLDHSEYGHAMSKIIEQNV---L----VDRCILDGEMLVWDTS--- 309 (1159)
Q Consensus 245 ~~~~vE~K~DGeR~qih~~g~-~v~~fSR----~g~d~t~~~p~l~~~l~~~~---~----~~~~ILDGElv~~d~~--- 309 (1159)
..|++|+|+||..+.+++.+| =++..|| .|+|+|.-...|... -..+ . +..+.+-||++.-...
T Consensus 116 ~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~I-P~~L~~g~~~~~p~~leVRGEv~m~~~~F~~ 194 (328)
T 1zau_A 116 AHYLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADV-PERLTPGDDYPVPEVLEVRGEVFFRLDDFQA 194 (328)
T ss_dssp SCEEEEEEECSEEEEEECGGGBCCBCBBCTTSSEECBCHHHHHHSSSC-CSBCCCBTTBCCCSCCEEEEEEBCCHHHHHH
T ss_pred cceEEeeecceEEEEEEEECCEEEEEEccCCCcccHHHHHHHHHhcCC-ChhhccCCcCCCCCeEEEEEEEEEEHHHHHH
Confidence 359999999999999998766 4789999 688998643222110 0012 0 2347899999863210
Q ss_pred -------CCcccccccHHHHHH-HhhcCCC----CCCCeEEEEEeeeecCCccccCCCHHHHHHHHHHhhccCCCcceee
Q 001089 310 -------LNRFAEFGSNQEIAK-AARDGLS----SDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETL 377 (1159)
Q Consensus 310 -------~~~~~pFg~lq~i~~-~~r~~~~----~~~~~~~~vFDiL~lnG~~l~~~pl~eRr~~L~~~i~~~~~~~~i~ 377 (1159)
.|. .+|..-+..+. ..| ..+ ..+++.|++|+|...++.. -.+..++.+.|.++-=++.
T Consensus 195 lN~~~~~~g~-~~faNPRNaAAGsLr-qld~~ita~R~L~f~~y~i~~~~~~~--~~t~~e~l~~L~~~Gf~v~------ 264 (328)
T 1zau_A 195 LNASLVEEGK-APFANPRNSAAGSLR-QKDPAVTARRRLRMICHGLGHVEGFR--PATLHQAYLALRAWGLPVS------ 264 (328)
T ss_dssp HHHSCSSTTS-CCCSSHHHHHHHHHT-CSSHHHHHHSCCBCCCCBCCCCSSCC--CSBHHHHHHHHHTTTCCCC------
T ss_pred HHHHHHHcCC-ccccChHHHHHHHHH-ccChhhhhcCcceEEEEeccccCCCC--CCCHHHHHHHHHHcCCCCC------
Confidence 010 23432222111 111 111 1357999999996555432 2578899999887632221
Q ss_pred ccCCCCCccccCCCCCccceecCCHHHHHHHHHHHHHc------CCceEEEecCCCCCcC----CCCCCCe
Q 001089 378 VPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIEN------RDEGIVLKDLGSKWEP----GDRSGKW 438 (1159)
Q Consensus 378 ~p~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~------g~EGlVlK~~ds~Y~p----GkRs~~W 438 (1159)
| ....+.+.+++.++++++.+. .-.|||+|--+-.|.. ..|.+.|
T Consensus 265 -~---------------~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~t~k~PRW 319 (328)
T 1zau_A 265 -E---------------HTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRW 319 (328)
T ss_dssp -C---------------CCCCBCHHHHHHHHHHHTTTTCSSCSSCEEEEEEEECBHHHHTTSCBCSSSBSS
T ss_pred -C---------------ceEEeCCHHHHHHHHHHHHHHHhcCCCCCceEEEEecCHHHHHHhCccCCCCCc
Confidence 0 122356789999999988665 5589999966555432 2355666
No 90
>1xk5_A Snurportin-1; protein-RNA-complex, transport protein; HET: TPG; 2.40A {Homo sapiens}
Probab=96.68 E-value=0.0053 Score=64.37 Aligned_cols=180 Identities=12% Similarity=0.097 Sum_probs=118.6
Q ss_pred ccccccccCChHHHHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEecCCCCcC---cchhhHHHHHHHhcccCceeecc
Q 001089 225 RPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHS---EYGHAMSKIIEQNVLVDRCILDG 301 (1159)
Q Consensus 225 ~PMLA~~~~~~~~~~~k~~~~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~t---~~~p~l~~~l~~~~~~~~~ILDG 301 (1159)
+.||++-+.++++-+. .+|++=+===|-||+|+...|....+||+|.-+. ...|+=... ..-...-+|||+
T Consensus 5 ~lmlsEWl~diP~dl~----~~Wl~vp~P~GkRcLvva~~G~T~~~~k~G~~~~~F~S~LPgG~~~--~~~~~~~tILDC 78 (204)
T 1xk5_A 5 QLMLSEWLIDVPSDLG----QEWIVVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRR--NSTAKDYTILDC 78 (204)
T ss_dssp CSEEEEECCSCCTTHH----HHEEEEEEESSEEEEEEEETTEEEEECTTSCEEEEECCSSSSSCSS--SCCTTCCEEEEE
T ss_pred chhhhhhcccCCCccC----CCeEEEECCCCcEEEEEecCCeEEEECCCCcEEEEEcccCCCCCcc--cCCCCCCEEEEE
Confidence 5688887766554332 3688888889999999999999999999998753 222320000 000124689998
Q ss_pred eEEEEeCCCCcccccccHHHHHHHhhcCCCCCCCeEEEEEeeeecCCccccCCCHHHHHHHHHHhhccCCCcceeeccCC
Q 001089 302 EMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDH 381 (1159)
Q Consensus 302 Elv~~d~~~~~~~pFg~lq~i~~~~r~~~~~~~~~~~~vFDiL~lnG~~l~~~pl~eRr~~L~~~i~~~~~~~~i~~p~~ 381 (1159)
=. ++. .-+|+|.|||..||.++.+-..+-|.--|++-+.+.++--+.. ...
T Consensus 79 I~---~e~-------------------------~~tyYVLDvl~W~g~~l~dcetefRffWl~skl~E~~~l~~~s-~~n 129 (204)
T 1xk5_A 79 IY---NEV-------------------------NQTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKT-KLN 129 (204)
T ss_dssp EE---EGG-------------------------GTEEEEEEEEEETTEECTTSCHHHHHHHHHHHTTTSTTTTSCB-TTB
T ss_pred EE---ecC-------------------------CcEEEEEEEEEECCceeecCcHHHHHHHHHHHhcccccccccc-ccC
Confidence 33 321 1259999999999999999999999999999887754211100 000
Q ss_pred CCCccccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEcccccc
Q 001089 382 GLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIR 447 (1159)
Q Consensus 382 ~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKiKpey~~ 447 (1159)
...+ .+ ...+.+ +.+.+.+++.....--..||.+=..++.|.+|. ++-+.=+||..+.
T Consensus 130 ~~~f--~~----lp~~~c-~~~~l~~~~~~~~~~~~DGlLFyHK~a~Y~~G~-TPLv~WLkp~mlp 187 (204)
T 1xk5_A 130 PFKF--VG----LKNFPC-TPESLCDVLSMDFPFEVDGLLFYHKQTHYSPGS-TPLVGWLRPYMVS 187 (204)
T ss_dssp SSEE--EE----CCEEEC-SHHHHHHHHTCCCSSCEEEEEEEESSCCCCSEE-EEEEEEECGGGHH
T ss_pred Ccce--Ee----cccccC-CHHHHHHHHccCCCCCcceEEEEeccccccCCC-CChhhhcchhhch
Confidence 0000 00 112233 467777777655667789999999999999994 5543335786543
No 91
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=96.67 E-value=0.0028 Score=58.48 Aligned_cols=76 Identities=13% Similarity=0.100 Sum_probs=58.1
Q ss_pred CCCcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEeccCCcccchhhHHHHHHHHhh
Q 001089 799 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREK 877 (1159)
Q Consensus 799 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVIV~~~~~~~~~~~~l~~~l~~~~~ 877 (1159)
+...|.|.+|+|.|.... . ++.+..+|..+||++...++ .++|+|+.+..+. .+ ++.
T Consensus 4 ~~~~l~G~~~v~TG~l~~---~--------R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gs--K~---~kA------ 61 (92)
T 1l7b_A 4 GGEALKGLTFVITGELSR---P--------REEVKALLRRLGAKVTDSVSRKTSYLVVGENPGS--KL---EKA------ 61 (92)
T ss_dssp CCCSSTTCEEECSTTTTS---C--------HHHHHHHHHHTTCEEESCCSSSCCCBEECSSSST--TH---HHH------
T ss_pred CCCCcCCcEEEEecCCCC---C--------HHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCCh--HH---HHH------
Confidence 345699999999997531 2 46788999999999999999 5999999875532 22 221
Q ss_pred hhccCCccEEecccHHHHHHHc
Q 001089 878 HLLWNKKLHVVRSQWLEDCLAK 899 (1159)
Q Consensus 878 ~~~~~~~~~IVs~~WL~~ci~~ 899 (1159)
....++||+.+|+.+++..
T Consensus 62 ---~~lgI~Ii~E~~f~~~l~~ 80 (92)
T 1l7b_A 62 ---RALGVPTLTEEELYRLLEA 80 (92)
T ss_dssp ---HCSSSCCEEHHHHHHHHHH
T ss_pred ---HHcCCcEEeHHHHHHHHHh
Confidence 1356899999999999874
No 92
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=96.64 E-value=0.0085 Score=67.35 Aligned_cols=158 Identities=20% Similarity=0.237 Sum_probs=94.1
Q ss_pred cEEEEEecceEEEEEEEeCCE-EEEEecC----CCCcCcchhhHHHHHHHhcc----cCceeecceEEEEeCC-------
Q 001089 246 EVVIECKFDGDRIQIHKNGSE-IHYFSRS----FLDHSEYGHAMSKIIEQNVL----VDRCILDGEMLVWDTS------- 309 (1159)
Q Consensus 246 ~~~vE~K~DGeR~qih~~g~~-v~~fSR~----g~d~t~~~p~l~~~l~~~~~----~~~~ILDGElv~~d~~------- 309 (1159)
.|++|+|+||.-+.+.+.+|. ++..||. |+|+|.-...|.. |-..+. +..+.+=||++.--..
T Consensus 108 ~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IPl~L~~~~~p~~leVRGEv~m~~~~F~~lN~~ 186 (322)
T 3uq8_A 108 TFCCEPKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRN-VPLQLLTDNPPARLEVRGEVFMPHAGFERLNKY 186 (322)
T ss_dssp EEEEEEEESSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHHTCTT-SCSBCSCSSCCSEEEEEEEEECCHHHHHHHHHH
T ss_pred eEEEEEeeceEEEEEEEeCCEEEEEEecCCCccchhHHHHHHHhcC-CCccccCCCCCceEEEEEEEEeeHHHHHHHHHH
Confidence 599999999999999887765 7899994 7888853211111 000111 3357788998762110
Q ss_pred ---CCcccccccHHHHH-HHhhc---CCCCCCCeEEEEEeeeecCCccccCCCHHHHHHHHHHhhccCCCcceeeccCCC
Q 001089 310 ---LNRFAEFGSNQEIA-KAARD---GLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHG 382 (1159)
Q Consensus 310 ---~~~~~pFg~lq~i~-~~~r~---~~~~~~~~~~~vFDiL~lnG~~l~~~pl~eRr~~L~~~i~~~~~~~~i~~p~~~ 382 (1159)
.+ -.+|..-+..+ ...|. .+...+++.|++|.+...+|..+ .....++.+.|..+-=++..
T Consensus 187 ~~~~g-~~~faNPRNaAAGsLRqld~~ita~R~L~ff~y~~~~~~~~~~-~~t~~e~l~~L~~~Gf~v~~---------- 254 (322)
T 3uq8_A 187 ALEHN-EKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL-PTTHYARLQWLKSIGIPVNP---------- 254 (322)
T ss_dssp HHHTT-CCCCSSHHHHHHHHHTCSCHHHHTTSCCEEEEEEEEEEESCCC-CSBHHHHHHHHHHTTCCCCT----------
T ss_pred HHHhC-CccccchhHHHHHHHhhcChhhhhcCccEEEEEeccccCCCCC-CCCHHHHHHHHHHcCCCCCC----------
Confidence 00 01232211111 11110 01124679999999987666432 35788999999876322110
Q ss_pred CCccccCCCCCccceecCCHHHHHHHHHHHHHcCC------ceEEEecCCCC
Q 001089 383 LNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRD------EGIVLKDLGSK 428 (1159)
Q Consensus 383 ~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~------EGlVlK~~ds~ 428 (1159)
....+.+.+++.++++.+.+.+. .|||+|--+-.
T Consensus 255 ------------~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~ 294 (322)
T 3uq8_A 255 ------------EIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 294 (322)
T ss_dssp ------------TCEEEESHHHHHHHHHHHHHTTTTTSSCEEEEEEEESBHH
T ss_pred ------------CcEEeCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCHH
Confidence 12346789999999998865443 69999954433
No 93
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=96.47 E-value=0.0046 Score=69.37 Aligned_cols=174 Identities=20% Similarity=0.219 Sum_probs=100.2
Q ss_pred CCcEEEEEecceEEEEEEEeCCE-EEEEec----CCCCcCcchhhHHHHHHHhcc-cCceeecceEEEEeC---------
Q 001089 244 GKEVVIECKFDGDRIQIHKNGSE-IHYFSR----SFLDHSEYGHAMSKIIEQNVL-VDRCILDGEMLVWDT--------- 308 (1159)
Q Consensus 244 ~~~~~vE~K~DGeR~qih~~g~~-v~~fSR----~g~d~t~~~p~l~~~l~~~~~-~~~~ILDGElv~~d~--------- 308 (1159)
.-.|++|+|+||.-+.+.+.+|. ++..|| .|+|+|.-...+.. |-..+. ...+.+=||++.--.
T Consensus 104 ~~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IP~~L~~~~~levRGEv~m~~~~F~~lN~~~ 182 (318)
T 3jsl_A 104 NVEYMCELKIDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHA-IPLKMKEPLNVEVRGEAYMPRRSFLRLNEEK 182 (318)
T ss_dssp SCCEEEEEEECSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHTTCTT-SCSBCSSCCCEEEEEEEECCHHHHHHHHHHH
T ss_pred CceEEEEEeecceEEEEEEECCEEEEEEeCCCCccchhHHHHHHHhcC-CccccCCCCcEEEEEEEEEcHHHHHHHHHHH
Confidence 34799999999999998887665 689999 47888853211110 000111 235788899986210
Q ss_pred -CCCcccccccHHHHH-HHhhcCCC----CCCCeEEEEEeeeecCCccccCCCHHHHHHHHHHhhccCCCcceeeccCCC
Q 001089 309 -SLNRFAEFGSNQEIA-KAARDGLS----SDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHG 382 (1159)
Q Consensus 309 -~~~~~~pFg~lq~i~-~~~r~~~~----~~~~~~~~vFDiL~lnG~~l~~~pl~eRr~~L~~~i~~~~~~~~i~~p~~~ 382 (1159)
..+. .+|..-+..+ ...| ..+ ..+++.|++|.+...+|.. -....++.+.|.++-=++. |
T Consensus 183 ~~~g~-~~faNPRNaAAGsLR-qld~~ita~R~L~ff~y~~~~~~~~~--~~t~~e~l~~L~~~GF~v~-------~--- 248 (318)
T 3jsl_A 183 EKNDE-QLFANPRNAAAGSLR-QLDSKLTAKRKLSVFIYSVNDFTDFN--ARSQSEALDELDKLGFTTN-------K--- 248 (318)
T ss_dssp BTTBC-CCCSSHHHHHHHHHS-CSCHHHHHHSCCEEEEEEESCCTTCC--CSBHHHHHHHHHHHTCCCC-------T---
T ss_pred HHhCC-ccccChHHHHHHHHH-ccChhhhhhCcceEEEEecccccCCC--CCCHHHHHHHHHHCCCCcC-------C---
Confidence 0010 2333222211 1111 111 1357999999998766533 2578899999988632211 1
Q ss_pred CCccccCCCCCccceecCCHHHHHHHHHHHHH------cCCceEEEecCCCCCc----CCCCCCCe---EEEccc
Q 001089 383 LNSHVRPQGEPCWSLVAHNVDEVEKFFKETIE------NRDEGIVLKDLGSKWE----PGDRSGKW---LKLKPE 444 (1159)
Q Consensus 383 ~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~------~g~EGlVlK~~ds~Y~----pGkRs~~W---lKiKpe 444 (1159)
....+.+.+++.++++++.+ -.-.|||+|--+-.+. ...|.+.| +|+.++
T Consensus 249 ------------~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~t~k~PRWAiAyKfp~~ 311 (318)
T 3jsl_A 249 ------------NRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFTQKSPRWAIAYKFPAE 311 (318)
T ss_dssp ------------TCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBTTEEEEECC--
T ss_pred ------------cceEeCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCHHHHHHhCCCCCCCCceEEECCCCc
Confidence 12346789999999988754 2347999996443332 11345566 455543
No 94
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=96.27 E-value=0.0096 Score=66.71 Aligned_cols=179 Identities=13% Similarity=0.109 Sum_probs=116.9
Q ss_pred ccccccccCChHHHHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEecCCCCcC---cchhhHHHHHHHhcccCceeecc
Q 001089 225 RPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHS---EYGHAMSKIIEQNVLVDRCILDG 301 (1159)
Q Consensus 225 ~PMLA~~~~~~~~~~~k~~~~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~t---~~~p~l~~~l~~~~~~~~~ILDG 301 (1159)
..||+.-+-.+++.+ +.+|++=+===|.||+|+...|....|+|+|.-+. ...|+=...- .. ...-|||||
T Consensus 106 qlMlsEWl~dvP~dL----~~~W~~vpcPvGkRcLVVas~G~T~aysk~G~~l~~F~S~LPGG~~~~-s~-~~~~TILDC 179 (365)
T 3gjx_B 106 QLMLSEWLIDVPSDL----GQEWIVVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRN-ST-AKDYTILDC 179 (365)
T ss_dssp CSEEEEECCSCCTTH----HHHEEEEEEESSEEEEEEEETTEEEEECTTCCEEEEECCSSTTTCC------CCCCEEEEE
T ss_pred hHHHHHhcccCCccc----ccCeeEEeccCCcEEEEEecCceEEEECCCCCEEeeeCCCCCCCCccc-cC-CCCCEEEEE
Confidence 578888776554432 23688878888999999999999999999997643 2334311100 00 245789998
Q ss_pred eEEEEeCCCCcccccccHHHHHHHhhcCCCCCCCeEEEEEeeeecCCccccCCCHHHHHHHHHHhhccCCCcceeeccCC
Q 001089 302 EMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDH 381 (1159)
Q Consensus 302 Elv~~d~~~~~~~pFg~lq~i~~~~r~~~~~~~~~~~~vFDiL~lnG~~l~~~pl~eRr~~L~~~i~~~~~~~~i~~p~~ 381 (1159)
= |+.. .-+|+|.|||..+|.++.+-+..-|.-.|+.-+.+.++--+. ....
T Consensus 180 I---y~e~-------------------------~~tyYVLDVL~W~g~~l~dCeteFRffWl~SKL~E~~~l~e~-s~~n 230 (365)
T 3gjx_B 180 I---YNEV-------------------------NQTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEK-TKLN 230 (365)
T ss_dssp E---EETT-------------------------TTEEEEEEEEEETTEECTTSCHHHHHHHHHHHGGGSTTTTSC-CSSC
T ss_pred E---eecC-------------------------CceEEEEEEeeeCCcccccCchHHHHHHHHHHhhhccccccc-ccCC
Confidence 3 4321 125999999999999999999999999999988765421000 0000
Q ss_pred CCCccccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEccccc
Q 001089 382 GLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYI 446 (1159)
Q Consensus 382 ~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKiKpey~ 446 (1159)
.+.+.+ ...+. -+.+.+...+..-..--..||.+=.-.+.|.+|. ++-+.=+||..+
T Consensus 231 --p~~Fv~----lp~~~-C~~esL~~~ls~~~pfe~DGLLFYHK~ahY~~G~-TPLVgWLkPyMv 287 (365)
T 3gjx_B 231 --PFKFVG----LKNFP-CTPESLCDVLSMDFPFEVDGLLFYHKQTHYSPGS-TPLVGWLRPYMV 287 (365)
T ss_dssp --CSEEEE----CCEEE-CCHHHHHHHTTCCCSSCEEEEEEEETTCCCCSEE-EEEEEEECHHHH
T ss_pred --CCceec----cCCCC-cCHHHHHHHhccCCCCccceEEEEeccccccCCC-Cccceecchhhh
Confidence 000000 01222 3467777776655555688999999999999994 554444567544
No 95
>2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase, ATP-binding; HET: APC; 2.21A {Bacteriophage T4}
Probab=96.24 E-value=0.028 Score=64.89 Aligned_cols=142 Identities=13% Similarity=0.117 Sum_probs=87.3
Q ss_pred CcEEEEEecceEEEEEEEeCCEEEEEecCCCCcCc--chhh---------HHHHHHHhcccCceeecceEEEEeCCCCcc
Q 001089 245 KEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE--YGHA---------MSKIIEQNVLVDRCILDGEMLVWDTSLNRF 313 (1159)
Q Consensus 245 ~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~t~--~~p~---------l~~~l~~~~~~~~~ILDGElv~~d~~~~~~ 313 (1159)
.++.+++|+||.-+.+...+|++.+.||++..... .+.. +.+.+ ..+...++.+-||++. +....+
T Consensus 93 ~pv~V~eK~DGslv~~~~~~G~l~~~SKgs~~~~~a~~~~~~l~~~~~~~l~~~~-~~l~~~~~t~~fE~~~--pen~hV 169 (375)
T 2c5u_A 93 DVDYILTKEDGSLVSTYLDGDEILFKSKGSIKSEQALMANGILMNINHHRLRDRL-KELAEDGFTANFEFVA--PTNRIV 169 (375)
T ss_dssp GEEEEEEECCSEEEEEEEETTEEEEEETTBSSSHHHHHHHHHHHSGGGHHHHHHH-HHHHHTTEEEEEEEEC--TTSCSS
T ss_pred CCEEEEEecCCeEEEEEEECCEEEEEeCCCCCChHHHHHHHHHhhhcchHHHHHH-HHhcCCCCEEEEEEcC--CCCcee
Confidence 57999999999998777889999999999876432 0111 11111 1123567899999986 332222
Q ss_pred cccccHHHHHHHhhcCCCCCCCeEEEEEeeeecC-CccccCCCHHHHHHHHHHhhccCCCcceeeccCCCCCccccCCCC
Q 001089 314 AEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVG-DTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGE 392 (1159)
Q Consensus 314 ~pFg~lq~i~~~~r~~~~~~~~~~~~vFDiL~ln-G~~l~~~pl~eRr~~L~~~i~~~~~~~~i~~p~~~~~~~v~~~~~ 392 (1159)
+++ .. ..+++|||-... |+- +|+.++.++.+ +. +..+
T Consensus 170 l~Y----------------~~-~~L~L~~i~~n~tg~~---l~~~e~~~~a~--~g-----~~~V--------------- 207 (375)
T 2c5u_A 170 LAY----------------QE-MKIILLNVRENETGEY---ISYDDIYKDAT--LR-----PYLV--------------- 207 (375)
T ss_dssp SCC----------------SS-CEEEEEEEEETTTCCB---CCHHHHHHCTT--TG-----GGBC---------------
T ss_pred ccC----------------CC-CCEEEEEEEEcCCCcE---ecHHHHHHHHh--hC-----CCcC---------------
Confidence 222 11 569999998765 443 69999876554 21 1000
Q ss_pred CccceecCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEcccc
Q 001089 393 PCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEY 445 (1159)
Q Consensus 393 ~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKiKpey 445 (1159)
+++. . +.+++.+.... ..+.||+|++..++ .++|+|.++
T Consensus 208 ~~~~--~-~l~ell~~~~~--~~~~EGfVir~~~g---------~~~K~Kt~~ 246 (375)
T 2c5u_A 208 ERYE--I-DSPKWIEEAKN--AENIEGYVAVMKDG---------SHFKIKSDW 246 (375)
T ss_dssp CEEE--C-SSTHHHHHHHH--CSSCCEEEEEETTS---------CEEEEECHH
T ss_pred ceee--c-cHHHHHHHHhh--CCCCceEEEEecCC---------CEEEEecHH
Confidence 0011 1 12333333222 57899999998742 499999953
No 96
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=96.21 E-value=0.012 Score=55.94 Aligned_cols=78 Identities=17% Similarity=0.166 Sum_probs=57.7
Q ss_pred CCcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEeccCCcccchhhHHHHHHHHhhh
Q 001089 800 WSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKH 878 (1159)
Q Consensus 800 ~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVIV~~~~~~~~~~~~l~~~l~~~~~~ 878 (1159)
...|.|.+|+|.|..... .++.+..+|..+||+|....+ .++|||+++..+. ..+.+..
T Consensus 30 ~~~l~G~~~v~TG~l~~~----------~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~----sK~~kA~------ 89 (109)
T 2k6g_A 30 ENCLEGLIFVITGVLESI----------ERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ----SKSDKAA------ 89 (109)
T ss_dssp TTTTTTCEEEEESBCSSC----------CHHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCH----HHHHHHH------
T ss_pred CCCCCCCEEEEeeeCCCC----------CHHHHHHHHHHcCCEeeCcccCCceEEEECCCCCh----HHHHHHH------
Confidence 346999999999975321 146788899999999999999 5999999875431 1122211
Q ss_pred hccCCccEEecccHHHHHHHcC
Q 001089 879 LLWNKKLHVVRSQWLEDCLAKE 900 (1159)
Q Consensus 879 ~~~~~~~~IVs~~WL~~ci~~g 900 (1159)
...++||+.+|+.+++..+
T Consensus 90 ---~lgI~Ii~E~~f~~ll~~~ 108 (109)
T 2k6g_A 90 ---ALGTKIIDEDGLLNLIRNL 108 (109)
T ss_dssp ---HHTCEEECHHHHHHHHHHT
T ss_pred ---HcCCeEEeHHHHHHHHHhC
Confidence 1358999999999998764
No 97
>1xdn_A RNA editing ligase MP52; HET: MSE ATP; 1.20A {Trypanosoma brucei} SCOP: d.142.2.4
Probab=96.16 E-value=0.011 Score=64.20 Aligned_cols=119 Identities=21% Similarity=0.252 Sum_probs=71.6
Q ss_pred CCCcEEEEEecceEEEEEEE--eCCE--EEEEecCCCC-----cCcc---hhhHHHHH---HHhc-------ccCceeec
Q 001089 243 HGKEVVIECKFDGDRIQIHK--NGSE--IHYFSRSFLD-----HSEY---GHAMSKII---EQNV-------LVDRCILD 300 (1159)
Q Consensus 243 ~~~~~~vE~K~DGeR~qih~--~g~~--v~~fSR~g~d-----~t~~---~p~l~~~l---~~~~-------~~~~~ILD 300 (1159)
.+..|.+.+|.||...-+.. +++. +++.||++.- +-.+ .+.+.+.+ .+.+ ....+++=
T Consensus 31 ~~~ewvatEKIHGaNFsii~~~d~~~~~i~~akRs~~l~~~e~FfGy~~i~~~l~~~~~~l~~~l~~~~~~~~~~~v~Vy 110 (277)
T 1xdn_A 31 AAQEWVACEKVHGTNFGIYLINQGDHEVVRFAKRSGIMDPNENFFGYHILIDEFTAQIRILNDLLKQKYGLSRVGRLVLN 110 (277)
T ss_dssp GGSCEEEEEECCSEEEEEEEEEETTEEEEEEEETTEECCTTCCCTTGGGGHHHHHHHHHHHHHHHHHHHTCSCCSEEEEE
T ss_pred CCCcEEEEEeeccccEEEEEecCCCeeEEEEeecccccCcccccccHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEE
Confidence 45679999999999998888 7877 9999999742 2221 13332222 1111 14789999
Q ss_pred ceEEEEe---CCC-----------CcccccccHHHHHHHhhcCCCCCC--CeEEEEEeeeecCC---ccccCCCHHHHHH
Q 001089 301 GEMLVWD---TSL-----------NRFAEFGSNQEIAKAARDGLSSDR--QLCYFAFDVLYVGD---TSVIHQSLKERHE 361 (1159)
Q Consensus 301 GElv~~d---~~~-----------~~~~pFg~lq~i~~~~r~~~~~~~--~~~~~vFDiL~lnG---~~l~~~pl~eRr~ 361 (1159)
||+..|. +.. .+..|+.. + ....++-.+. .+.|+||||.+.++ .....+++.+=.+
T Consensus 111 GELfGg~y~hp~v~~~~~~~~~~~~~~~p~~~-~----~IQ~~i~~~Y~p~~~FYaFDI~~~~~~~~~~~~~L~fd~~~~ 185 (277)
T 1xdn_A 111 GELFGAKYKHPLVPKSEKWCTLPNGKKFPIAG-V----QIQREPFPQYSPELHFFAFDIKYSVSGAEEDFVLLGYDEFVE 185 (277)
T ss_dssp EEEEEEECCCTTSCCCCCEEECTTSCEEEGGG-C----CSCCCSSCCCEEEEEEEEEEEEEESSCCGGGEEECCHHHHHH
T ss_pred EEEecCccCCccccccccccccCccccCcccc-c----ccccccccccCCCceEEEEEEEEecCCCccccccCCHHHHHH
Confidence 9999886 110 11112110 0 0011210122 58999999998752 2345688888777
Q ss_pred HHHHh
Q 001089 362 LLQKV 366 (1159)
Q Consensus 362 ~L~~~ 366 (1159)
++.+.
T Consensus 186 ~~~~~ 190 (277)
T 1xdn_A 186 FSSKV 190 (277)
T ss_dssp HHHTS
T ss_pred HHHHh
Confidence 77664
No 98
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.90 E-value=0.02 Score=54.71 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=57.8
Q ss_pred CCcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEeccCCcccchhhHHHHHHHHhhh
Q 001089 800 WSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKH 878 (1159)
Q Consensus 800 ~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVIV~~~~~~~~~~~~l~~~l~~~~~~ 878 (1159)
...|.|.+|+|.|..... .++.++.+|..+||+|....+ .++|||+.+..+. ..+++..
T Consensus 20 ~~~l~G~~~v~TG~l~~~----------~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~----sKl~KA~------ 79 (112)
T 2ebu_A 20 ENCLEGLIFVITGVLESI----------ERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ----SKSDKAA------ 79 (112)
T ss_dssp SSSSTTCEEEECSCCSSS----------CHHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCS----HHHHHHH------
T ss_pred CCCcCCCEEEEeeeCCCC----------CHHHHHHHHHHcCCEEeccccCCeeEEEecCCCCh----HHHHHHH------
Confidence 356999999999975321 146788999999999999998 5999999875431 1122211
Q ss_pred hccCCccEEecccHHHHHHHcC
Q 001089 879 LLWNKKLHVVRSQWLEDCLAKE 900 (1159)
Q Consensus 879 ~~~~~~~~IVs~~WL~~ci~~g 900 (1159)
...++||+.+|+.+++..+
T Consensus 80 ---~lgI~IisE~~f~~ll~~~ 98 (112)
T 2ebu_A 80 ---ALGTKIIDEDGLLNLIRTM 98 (112)
T ss_dssp ---HHTCEEEEHHHHHHHHHHS
T ss_pred ---HcCCeEEeHHHHHHHHhhC
Confidence 1358999999999999753
No 99
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=95.89 E-value=0.027 Score=69.28 Aligned_cols=221 Identities=18% Similarity=0.212 Sum_probs=125.6
Q ss_pred cEEEEEecceEEEEEEEeCCE-EEEEec----CCCCcCcchhhHHHHHHHhcc----cCceeecceEEEEeCC-------
Q 001089 246 EVVIECKFDGDRIQIHKNGSE-IHYFSR----SFLDHSEYGHAMSKIIEQNVL----VDRCILDGEMLVWDTS------- 309 (1159)
Q Consensus 246 ~~~vE~K~DGeR~qih~~g~~-v~~fSR----~g~d~t~~~p~l~~~l~~~~~----~~~~ILDGElv~~d~~------- 309 (1159)
.|++|+|+||.-+.+.+.+|. ++..|| .|+|+|.-...+... -..+. +..+.+=||++.-...
T Consensus 109 ~~~~e~KiDGlaisL~Ye~G~Lv~a~TRGDG~~GEdvT~n~rtI~~I-P~~l~~~~~p~~levRGEv~m~~~~F~~lN~~ 187 (671)
T 2owo_A 109 TWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAI-PLKLHGENIPARLEVRGEVFLPQAGFEKINED 187 (671)
T ss_dssp CEEEEEEESSEEEEEEEETTEEEEEECCTTSSEEEBCHHHHHTCTTS-CSBCCSSSCCSEEEEEEEEECCHHHHHHHHHH
T ss_pred eEEEEEecceEEEEEEEeCCEEEEEEecCCCcchhhHHHHHhhhcCC-CccccCCCCCCeEEEEEEEEEEHHHHHHHHHH
Confidence 699999999999999887765 688999 477887532111110 00111 2337788998762110
Q ss_pred ---CCcccccccHHHHH-HHhhcCCC----CCCCeEEEEEeeeecCC-ccccCCCHHHHHHHHHHhhccCCCcceeeccC
Q 001089 310 ---LNRFAEFGSNQEIA-KAARDGLS----SDRQLCYFAFDVLYVGD-TSVIHQSLKERHELLQKVVKPSKGRLETLVPD 380 (1159)
Q Consensus 310 ---~~~~~pFg~lq~i~-~~~r~~~~----~~~~~~~~vFDiL~lnG-~~l~~~pl~eRr~~L~~~i~~~~~~~~i~~p~ 380 (1159)
.+ -.+|..-+..+ ...| ..+ ..+++.|++|++...+| .. -....++.+.|..+-=+...
T Consensus 188 ~~~~g-~~~faNpRNaaAGsLr-qld~~~~a~R~L~~~~y~~~~~~~~~~--~~t~~e~l~~L~~~Gf~v~~-------- 255 (671)
T 2owo_A 188 ARRTG-GKVFANPRNAAAGSLR-QLDPRITAKRPLTFFCYGVGVLEGGEL--PDTHLGRLLQFKKWGLPVSD-------- 255 (671)
T ss_dssp HHHSS-CCCCSCHHHHHHHHHT-CSCHHHHHTSCCEEEEEEEEEEESSCC--CSBHHHHHHHHHHHTCCCCT--------
T ss_pred HHhcC-CCcccChHHHHHHHHH-hcChhhHhcCCCEEEEEECcccCCCCC--CCCHHHHHHHHHHCCCCCCC--------
Confidence 00 01232212111 1111 111 24689999999965554 22 25788999999887322211
Q ss_pred CCCCccccCCCCCccceecCCHHHHHHHHHHHHHc------CCceEEEecCCCCCc----CCCCCCCe---EEEcccccc
Q 001089 381 HGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIEN------RDEGIVLKDLGSKWE----PGDRSGKW---LKLKPEYIR 447 (1159)
Q Consensus 381 ~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~------g~EGlVlK~~ds~Y~----pGkRs~~W---lKiKpey~~ 447 (1159)
....+.+.+++.++++++.+. .-.|||+|--+-.+. ...|.+.| +|+.++
T Consensus 256 --------------~~~~~~~~~~v~~~~~~~~~~R~~l~y~iDGvViKv~~~~~q~~LG~t~k~PrWAiA~Kfpae--- 318 (671)
T 2owo_A 256 --------------RVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARAPRWAVAFKFPAQ--- 318 (671)
T ss_dssp --------------TCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEEECCCC---
T ss_pred --------------cceeeCCHHHHHHHHHHHHHHHhcCCCCCccEEEEecCHHHHHHhCcccCCCCceEEEcCCCc---
Confidence 123467899999999988553 348999996544332 12466777 677765
Q ss_pred cCCcccEEEEEEEeCCCCCCCccceEEEEEecCCCCCCCCceEEEEEEecCCCCHHHHHHH
Q 001089 448 AGSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAV 508 (1159)
Q Consensus 448 ~g~~lDlvVIG~~~G~Grr~g~~gsfllg~~d~~~~~~~~~~f~~v~kVgtG~sdeel~~l 508 (1159)
..--.|.+-.|..|| .|.+.-. |..++-.- .+. +|.++ |-.+..+.+++
T Consensus 319 ---~~~T~l~~I~~qVGR-TG~iTPv--A~lePV~l---~G~--tVsrA-TLHN~d~i~~~ 367 (671)
T 2owo_A 319 ---EQMTFVRDVEFQVGR-TGAITPV--ARLEPVHV---AGV--LVSNA-TLHNADEIERL 367 (671)
T ss_dssp ---EEEEEEEEEEEEECT-TSBEEEE--EEEEEEEE---TTE--EEEEE-ECCSHHHHHHH
T ss_pred ---eEEEEEEEEEEecCC-CceeeeE--EEEEeEEE---CCE--EEEec-cCCCHHHHHHc
Confidence 344566677776665 4555432 33322100 012 34443 55666776654
No 100
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=95.49 E-value=0.033 Score=53.22 Aligned_cols=82 Identities=13% Similarity=0.113 Sum_probs=58.2
Q ss_pred CcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecc---CCcccchhhHHHHHHHHh
Q 001089 801 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSV---LGYDVNFNSLTESFTARE 876 (1159)
Q Consensus 801 ~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVIV~~~---~~~~~~~~~l~~~l~~~~ 876 (1159)
..|.|++|.|.|... .. ++.++..|+.+||+++...+ .++|||+.+. .+ ..+++ +
T Consensus 9 ~~l~G~~~ViTG~l~---~~--------R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~g-----sKl~k----A- 67 (113)
T 2cok_A 9 KPLSNMKILTLGKLS---RN--------KDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMN-----KKMEE----V- 67 (113)
T ss_dssp CSSSSCEEEECSCCS---SC--------HHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCC-----HHHHH----H-
T ss_pred CCcCCCEEEEEecCC---CC--------HHHHHHHHHHCCCEEcCccccCccEEEECCCCCCCC-----hHHHH----H-
Confidence 469999999999642 12 46788999999999999998 5889999732 11 11221 1
Q ss_pred hhhccCCccEEecccH----------HHHHHHcCCccCCCC
Q 001089 877 KHLLWNKKLHVVRSQW----------LEDCLAKEQKSEEYE 907 (1159)
Q Consensus 877 ~~~~~~~~~~IVs~~W----------L~~ci~~g~~v~E~~ 907 (1159)
....++||+.+| +.+||....++|-..
T Consensus 68 ----~~lgI~IvsE~~l~~~~~~~~~~~~~i~k~~i~~w~~ 104 (113)
T 2cok_A 68 ----KEANIRVVSEDFLQDVSASTKSLQELFLAHILSSWGA 104 (113)
T ss_dssp ----HHTTCCEECTHHHHHHHSCCSCHHHHHHHTBCSSCCC
T ss_pred ----HHCCCcEEeHHHHHHHHhhchhHHHHHHHhcCCCCCC
Confidence 124689999999 566777766666554
No 101
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=95.46 E-value=0.0084 Score=72.81 Aligned_cols=194 Identities=18% Similarity=0.213 Sum_probs=115.1
Q ss_pred cEEEEEecceEEEEEEEeCCE-EEEEec----CCCCcCcchhhHHHHHHHhcc-------cCceeecceEEEEeC-----
Q 001089 246 EVVIECKFDGDRIQIHKNGSE-IHYFSR----SFLDHSEYGHAMSKIIEQNVL-------VDRCILDGEMLVWDT----- 308 (1159)
Q Consensus 246 ~~~vE~K~DGeR~qih~~g~~-v~~fSR----~g~d~t~~~p~l~~~l~~~~~-------~~~~ILDGElv~~d~----- 308 (1159)
.|++|+|+||.-+.+.+.+|. ++..|| .|+|+|.-...+.. |-..+. +..+.+=||++.--.
T Consensus 117 ~~~~EpKiDGlavsL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IP~~L~~~~~~~~p~~levRGEv~m~~~~F~~l 195 (615)
T 3sgi_A 117 HYLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIAD-VPERLTPGDDYPVPEVLEVRGEVFFRLDDFQAL 195 (615)
T ss_dssp CEEEEEEECSEEEEEEEETTEEEEEECCTTSSSCBCCHHHHHSCSS-SCSSCCCCSSCCCCSEEEEEEEEECCHHHHHHH
T ss_pred eEEEEEEecceEEEEEEECCEEEEEEecCCCcchhhHHHHHHhhcC-cchhhcCCcccCCCCeEEEEEEEEEeHHHHHHH
Confidence 699999999999999887776 689999 58888853211110 000111 235788899986310
Q ss_pred --C---CCcccccccHHHHHH-HhhcCCCC----CCCeEEEEEeeeecCCccccCCCHHHHHHHHHHhhccCCCcceeec
Q 001089 309 --S---LNRFAEFGSNQEIAK-AARDGLSS----DRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLV 378 (1159)
Q Consensus 309 --~---~~~~~pFg~lq~i~~-~~r~~~~~----~~~~~~~vFDiL~lnG~~l~~~pl~eRr~~L~~~i~~~~~~~~i~~ 378 (1159)
. .+. .+|..-+..+. ..| ..++ .+++.|++|.+...+|.. -....++.+.|.++-=+..
T Consensus 196 N~~~~~~g~-~~faNpRNaAAGsLR-qld~~ita~R~L~~f~y~~~~~~~~~--~~t~~e~l~~L~~~Gf~v~------- 264 (615)
T 3sgi_A 196 NASLVEEGK-APFANPRNSAAGSLR-QKDPAVTARRRLRMICHGLGHVEGFR--PATLHQAYLALRAWGLPVS------- 264 (615)
T ss_dssp HTTCSSSSS-CCCSSHHHHHHHHHT-CSSTTHHHHSCCEEEEEEEEEEESCC--CSBTTTHHHHHHHTTCCCC-------
T ss_pred HHHHHHcCC-CcCCChHHHHHHHHH-cCChhhHhhCcceEEEEeccccCCCC--CcCHHHHHHHHHHCCCCCC-------
Confidence 0 010 24433232221 112 1122 367999999998765532 2356788888887621111
Q ss_pred cCCCCCccccCCCCCccceecCCHHHHHHHHHHHHH------cCCceEEEecCCCCCcC----CCCCCCe---EEEcccc
Q 001089 379 PDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIE------NRDEGIVLKDLGSKWEP----GDRSGKW---LKLKPEY 445 (1159)
Q Consensus 379 p~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~------~g~EGlVlK~~ds~Y~p----GkRs~~W---lKiKpey 445 (1159)
| ....+.+.+++.++++.+.+ ---.|||+|--+-.+.. ..|.+.| +|+.++
T Consensus 265 ~---------------~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~lG~t~k~PRWAiA~Kfpae- 328 (615)
T 3sgi_A 265 E---------------HTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRWAIAYKYPPE- 328 (615)
T ss_dssp C---------------CCCCBSSHHHHHHHHTTTTTSGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEEECCCS-
T ss_pred C---------------CeEeeCCHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCHHHHHHhCCCCCCCCceEEEcCCCc-
Confidence 0 12346789999999987633 34579999965544332 2366788 788876
Q ss_pred cccCCcccEEEEEEEeCCCCCCCccceE
Q 001089 446 IRAGSDLDVLIIGGYYGSGRRGGEVAQF 473 (1159)
Q Consensus 446 ~~~g~~lDlvVIG~~~G~Grr~g~~gsf 473 (1159)
..--.|.+-.|..|| .|.++-.
T Consensus 329 -----e~~T~l~~I~~qVGR-TG~iTPv 350 (615)
T 3sgi_A 329 -----EAQTKLLDIRVNVGR-TGRITPF 350 (615)
T ss_dssp -----EEEEECCEECCCBCS-SSCBCCB
T ss_pred -----eeEEEEEEEEEecCC-CceeeEE
Confidence 334455666666664 5555443
No 102
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=95.41 E-value=0.0026 Score=78.13 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=0.0
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhHhcCC-CeeecchHHHHHhcCcc
Q 001089 654 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKKL 732 (1159)
Q Consensus 654 s~lF~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~~~~~Th~Ia~~~~~~k~~~a~~~~-~VV~p~WV~dCi~~~~l 732 (1159)
...|.|+.||+.+.... ++++++.+|.++||++..+.+..++|+|+++..+-|++.|...+ +||+-+|+++++..+.+
T Consensus 585 ~~~l~G~~~v~TG~l~~-~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~gsKl~KA~~lgI~Ii~E~~f~~~l~~~~~ 663 (667)
T 1dgs_A 585 SDLLSGLTFVLTGELSR-PREEVKALLGRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVAVLTEEEFWRFLKEKGA 663 (667)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCEEEEeCCCCC-CHHHHHHHHHHcCCEEcCcccCCeeEEEECCCCChHHHHHHHCCCeEEeHHHHHHHHhcCCC
Confidence 45799999999866555 89999999999999999999887888998877778888888888 99999999999987654
Q ss_pred C
Q 001089 733 L 733 (1159)
Q Consensus 733 L 733 (1159)
.
T Consensus 664 p 664 (667)
T 1dgs_A 664 P 664 (667)
T ss_dssp -
T ss_pred C
Confidence 3
No 103
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=94.87 E-value=0.046 Score=67.20 Aligned_cols=191 Identities=18% Similarity=0.196 Sum_probs=112.0
Q ss_pred cEEEEEecceEEEEEEEeCCEEEEEec----CCCCcCcchhhHHHHHHHhcc--cCceeecceEEEEeCCCCc-------
Q 001089 246 EVVIECKFDGDRIQIHKNGSEIHYFSR----SFLDHSEYGHAMSKIIEQNVL--VDRCILDGEMLVWDTSLNR------- 312 (1159)
Q Consensus 246 ~~~vE~K~DGeR~qih~~g~~v~~fSR----~g~d~t~~~p~l~~~l~~~~~--~~~~ILDGElv~~d~~~~~------- 312 (1159)
.|++|+|+||.-+ +.+.+|. +..|| .|+|+|.-...+... -..+. +..+.+=||++.-...-.+
T Consensus 110 ~~~~e~KiDGlai-L~Ye~G~-~a~TRGDG~~GedvT~n~rtI~~i-P~~l~~~p~~levRGEv~m~~~~F~~lN~~~~~ 186 (667)
T 1dgs_A 110 LYTVEHKVDGLSV-LYYEEGV-WSTGSGDGEVGEEVTQNLLTIPTI-PRRLKGVPDRLEVRGEVYMPIEAFLRLNEELEE 186 (667)
T ss_dssp EEEEEECCSCEEE-EEEETTE-EEEEECSSSEEEBCTGGGTSSTTS-CSBCSSCCSEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred eEEEEEccceeEE-EEEcCCC-EEEeeCCCcchhhHHHHHhhhcCC-CcccCCCCCeEEEEEEEEEEHHHHHHHHHHHHh
Confidence 4999999999999 8888888 99999 478898643222110 00111 3347788998762110000
Q ss_pred --ccccccHHHHH-HHhhcCCC----CCCCe--EEEEEeeee-cCCccccCCCHHHHHHHHHHhhccCCCcceeeccCCC
Q 001089 313 --FAEFGSNQEIA-KAARDGLS----SDRQL--CYFAFDVLY-VGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHG 382 (1159)
Q Consensus 313 --~~pFg~lq~i~-~~~r~~~~----~~~~~--~~~vFDiL~-lnG~~l~~~pl~eRr~~L~~~i~~~~~~~~i~~p~~~ 382 (1159)
-.+|..-+..+ ...| ..+ ..+++ .|++|++++ .++.. -.+..++.+.|..+-=+...
T Consensus 187 ~g~~~faNpRNaaAGsLr-qld~~~~a~r~L~~~~~~y~~~~~~~~~~--~~t~~e~l~~L~~~Gf~v~~---------- 253 (667)
T 1dgs_A 187 RGEKVFKNPRNAAAGSLR-QKDPRVTAKRGLRATFYALGLGLGLEESG--LKSQYELLLWLKEKGFPVEH---------- 253 (667)
T ss_dssp HTCCCCSSHHHHHHHHHS-CSSHHHHHHSCCEEECCCBCTTTTTTSCC--CCBHHHHHHHHHHTTCCCCS----------
T ss_pred cCCCcccChHHHHHHHHH-hcChhhhhhCCCCCEEEEEEeeccCCCCC--CCCHHHHHHHHHHCCCCCCc----------
Confidence 01222111111 0111 111 13578 999999852 23322 25788999998876322111
Q ss_pred CCccccCCCCCccceecCCHHHHHHHHHHHHHc------CCceEEEecCCCCCc----CCCCCCCe---EEEcccccccC
Q 001089 383 LNSHVRPQGEPCWSLVAHNVDEVEKFFKETIEN------RDEGIVLKDLGSKWE----PGDRSGKW---LKLKPEYIRAG 449 (1159)
Q Consensus 383 ~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~------g~EGlVlK~~ds~Y~----pGkRs~~W---lKiKpey~~~g 449 (1159)
....+.+.+++.++++++-+. .-.|||+|--+-.+. .-.|.+.| +|+.++
T Consensus 254 ------------~~~~~~~~~~v~~~~~~~~~~R~~l~y~iDGvViKv~~~~~q~~LG~t~k~PrWAiA~Kfpae----- 316 (667)
T 1dgs_A 254 ------------CYEKALGAEGVEEVYRRGLAQRHALPFEADGVVLKLDDLTLWGELGYTARAPRFALAYKFPAE----- 316 (667)
T ss_dssp ------------CEEEEEHHHHHHHHHHHHHHTTTTSSSCCCEEEEEESBTHHHHHSCBCSSCBSSEEEEECCCC-----
T ss_pred ------------cceEeCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEecCHHHHHHhCcccCCCCceEEecCCCc-----
Confidence 123456789999999988754 358999996554432 12366777 677765
Q ss_pred CcccEEEEEEEeCCCCCCCccc
Q 001089 450 SDLDVLIIGGYYGSGRRGGEVA 471 (1159)
Q Consensus 450 ~~lDlvVIG~~~G~Grr~g~~g 471 (1159)
..--.|.+-.|..|| .|.+.
T Consensus 317 -~~~T~l~~I~~qVGR-TG~iT 336 (667)
T 1dgs_A 317 -EKETRLLDVVFQVGR-TGRVT 336 (667)
T ss_dssp -CEEEEEEEEEEEECT-TSBEE
T ss_pred -eEEEEEEEEEEecCC-Cceee
Confidence 445566777776665 45554
No 104
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=94.83 E-value=0.0048 Score=75.83 Aligned_cols=75 Identities=20% Similarity=0.231 Sum_probs=0.0
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhhHhHhcCC-CeeecchHHHHHh
Q 001089 654 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCS 728 (1159)
Q Consensus 654 s~lF~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~~~~~Th~Ia~~~~~~k~~~a~~~~-~VV~p~WV~dCi~ 728 (1159)
...|.|+.||+.+.....++++++.+|.++||++..+.+..++|+|+++..+-|+..|...+ +||+-+|+++++.
T Consensus 595 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~gsKl~KA~~lgI~Ii~E~~f~~~l~ 670 (671)
T 2owo_A 595 DSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLLG 670 (671)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CCcccCcEEEEcCCCCCCCHHHHHHHHHHcCCEEeCcccCceeEEEECCCCChHHHHHHHCCCcEEcHHHHHHHhc
Confidence 45799999999876666789999999999999999999888889998877778888888888 9999999998874
No 105
>4e6n_A Metallophosphoesterase; RNA repair, RNA ligase, ligase-activating, protein binding; HET: AMP; 2.39A {Clostridium thermocellum} PDB: 4drf_A* 3ty9_A* 3ty8_A* 3ty5_A*
Probab=94.63 E-value=0.095 Score=58.94 Aligned_cols=179 Identities=16% Similarity=0.210 Sum_probs=108.8
Q ss_pred ChHHHHHhcC---CCcEEEEEecceEEEEEEE--e------------CCEEEEEecCCCCcCcchhhHH----HHHHH--
Q 001089 234 DAHAAWRKLH---GKEVVIECKFDGDRIQIHK--N------------GSEIHYFSRSFLDHSEYGHAMS----KIIEQ-- 290 (1159)
Q Consensus 234 ~~~~~~~k~~---~~~~~vE~K~DGeR~qih~--~------------g~~v~~fSR~g~d~t~~~p~l~----~~l~~-- 290 (1159)
.+.+++.-+. =..+.+|+|.=|-|+++.+ + |..=.+|+|+|..+-+. +.+. ..+..
T Consensus 67 HP~eAF~yyr~~GV~~VVCEeKHMGSRAVv~vcRd~~~A~~rFGv~~g~~G~~yTRTGR~FF~d-~~l~~~ll~rlr~a~ 145 (427)
T 4e6n_A 67 HPIEAFEYFRTRGVGKVVCEQKHMGSRAVVIVCKDSQVAEKRFGVLDGTAGICYTRTGRHFFDD-MQLEAELIDRVRKVL 145 (427)
T ss_dssp CHHHHHHHHHTTTCCEEEEEECCCSEEEEEEEESSHHHHHHHHCCCSSCSEEEECTTSCBSCSC-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCceEEeccccCCcceEEEEEcCHHHHHHhcCCCCCCcceeEecCCccccCC-chhHHHHHHHHHHHH
Confidence 3455654442 2569999999999997664 2 22456999999987632 2322 22211
Q ss_pred -------hcccCceeecceEEEEeCCCC-----cccccccHH---------HHHHHhh--------------cCC-----
Q 001089 291 -------NVLVDRCILDGEMLVWDTSLN-----RFAEFGSNQ---------EIAKAAR--------------DGL----- 330 (1159)
Q Consensus 291 -------~~~~~~~ILDGElv~~d~~~~-----~~~pFg~lq---------~i~~~~r--------------~~~----- 330 (1159)
.+..+=+.||||++.|+-+.+ .+.|-|... .+..+.. .++
T Consensus 146 ~~aglw~~l~tdWl~LD~ELmPWSaKA~~Lir~QYA~VgaA~~a~l~~a~~~L~~A~~~~~~~~~~~~~~~~rg~dv~~L 225 (427)
T 4e6n_A 146 DKSGFWGDFNTDWVCLDCELMPWSAKAQKLLEEQYSAVGISGRVVLDEAVKLLKQASLNKTVSFDVSRQTSGKNADINEL 225 (427)
T ss_dssp HHHTHHHHTTCSEEEEEEEEECTHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTC-----------CEECCHHHH
T ss_pred HhcchHHHhCCcEEEeecccCCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccccccccccCCCHHHH
Confidence 123455799999999974321 122211100 0000000 011
Q ss_pred -------------------------CCCCCeEEEEEeeeecCCccccCCCHHHHHHHHHHhhccCCCcceeeccCCCCCc
Q 001089 331 -------------------------SSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNS 385 (1159)
Q Consensus 331 -------------------------~~~~~~~~~vFDiL~lnG~~l~~~pl~eRr~~L~~~i~~~~~~~~i~~p~~~~~~ 385 (1159)
+.-..+.+.-|-||-..|....+.|-.--.+.+..+....++ ++.+...
T Consensus 226 l~r~~~r~~~~~~y~~AYr~YcWpv~gl~~~rlAPF~iLA~eg~~~~~~~H~WHm~~~~rl~~~d~~---l~~~T~~--- 299 (427)
T 4e6n_A 226 LQRFTERSEMMQKYVEAYRKYCWPVNSIDDLKLAPFHILATEGKVHSDKNHIWHMDTIAKYCTQDDS---LIMATNH--- 299 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCSSGGGCEEEEEEEEEETTEECTTSCHHHHHHHHHHHHSTTCT---TBCCCCE---
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCcCceeecchhhhhcccccccCCChHHHHHHHHHHHhcCcc---ceecccc---
Confidence 111248899999999999999999999888888888765543 2222110
Q ss_pred cccCCCCCccceecCC---HHHHHHHHHHHHHcCCceEEEecCCCC
Q 001089 386 HVRPQGEPCWSLVAHN---VDEVEKFFKETIENRDEGIVLKDLGSK 428 (1159)
Q Consensus 386 ~v~~~~~~~~~~~~~~---~~ei~~~~~~ai~~g~EGlVlK~~ds~ 428 (1159)
..+...| .++...++.+.-+.|.||+|+|..+..
T Consensus 300 ---------~~VDl~d~~s~~~a~~WW~~lT~~GgEGMVVKP~~~~ 336 (427)
T 4e6n_A 300 ---------ILVDVTDAESVDKGIKWWEDLTASGGEGMVVKPYDFI 336 (427)
T ss_dssp ---------EEEETTCHHHHHHHHHHHHHHHHTTCCEEEEEESSSS
T ss_pred ---------EEeeCCCHHHHHHHHHHHHHHhcCCCceeEecchhhh
Confidence 0111233 456667888888999999999987544
No 106
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=92.00 E-value=0.12 Score=63.64 Aligned_cols=87 Identities=25% Similarity=0.440 Sum_probs=74.6
Q ss_pred CCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh--------ccCCcccccccccCc------
Q 001089 122 GGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDL--------KLGISEKSIFHEFHP------ 187 (1159)
Q Consensus 122 ~~LTi~eVn~~Ld~LA~~~~~~~k~~il~~ll~~~s~~E~k~l~RiIlkdL--------riGi~e~til~~~hp------ 187 (1159)
.++...++-++|++|+..+++.+|..+|..+|..+++.+.-|.++++++.| ++|++++++.+++..
T Consensus 19 ~~~~f~~~~~~~~~l~~t~~r~~k~~~l~~~~~~~~~~d~~~~~~ll~~~l~P~~~~~~~~gi~~~~L~k~~~~~~g~~~ 98 (621)
T 2hiv_A 19 SHMEFKVIAEYFDKLEKISSRLQLTALLADLLSKSDKTIIDKVVYIIQGKLWPDFLGYPELGIGEKFLIKAISIATNTDE 98 (621)
T ss_dssp --CBTHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSCGGGHHHHHHHTTTCSSCGGGCCCCCCCCHHHHHHHHHHHHTCCH
T ss_pred CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCchHHHHHHHHHhCCcCcccccccccCCCHHHHHHHHHHHHCcCH
Confidence 467888999999999999999999999999999999999999999998875 789999998876632
Q ss_pred -cHHHHhhhcCCHHHHHHHHhh
Q 001089 188 -DAEDLFNVTCDLKLVCEKLKD 208 (1159)
Q Consensus 188 -da~~~~~~~~dL~~V~~~L~~ 208 (1159)
.....|....||+.|+..+..
T Consensus 99 ~~~~~~~~~~GDlg~~a~~~~~ 120 (621)
T 2hiv_A 99 NSVENLYKTIGDLGEVARRLKS 120 (621)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHh
Confidence 345678889999999998864
No 107
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=89.38 E-value=0.22 Score=55.45 Aligned_cols=68 Identities=16% Similarity=0.124 Sum_probs=48.6
Q ss_pred ccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEecC-CCCceEEEEecCCCh----h-hHhHhcCCCeeecchHHHHHh
Q 001089 657 FSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNL-NNSVTHCVAADNKGL----K-YEAAKRRGDVIHYSWVLDCCS 728 (1159)
Q Consensus 657 F~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n~-~~~~Th~Ia~~~~~~----k-~~~a~~~~~VV~p~WV~dCi~ 728 (1159)
+..++||+ + ....+.+|.+.+.+.||+++ ++ .+.+||+|.....+. | ..+++...+||+|+|+..+.+
T Consensus 113 W~P~Vl~~-S--ske~~~~L~~~L~~LGik~v-~~~~detTHlVm~krnT~KvTvK~L~ALI~gkPIV~~~Fl~al~~ 186 (325)
T 3huf_A 113 WRSMCIQF-D--NPEMLSQWASNLNLLGIPTG-LRDSDATTHFVMNRQAGSSITVGTMYAFLKKTVIIDDSYLQYLST 186 (325)
T ss_dssp ECCCCEEE-S--CHHHHHHHHHHHHTTTCCEE-SSCCTTCCEEECCCCCSSCCCHHHHHHHHTTCEEECHHHHHHHTT
T ss_pred EeeeEEEe-c--CHHHHHHHHHHHHHcCCEEE-EccCCCEEEEEEeccccccchHHHHHHHHCCCcEecHHHHHHHHH
Confidence 45566776 2 11235679999999999999 87 566999998543443 3 345555559999999999754
No 108
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.18 E-value=0.94 Score=45.29 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=55.5
Q ss_pred ccCeEEEEEcCC--CCCChHHHHHHHHHcCCEEEecC-CCCceEEEEecCCCh----hhHhHhcCC-CeeecchHHHHHh
Q 001089 657 FSDMVFYFVNVP--PAYSLDSLHKMVVENGGTFSMNL-NNSVTHCVAADNKGL----KYEAAKRRG-DVIHYSWVLDCCS 728 (1159)
Q Consensus 657 F~G~~F~vv~~~--~~~~k~eLe~lI~~~GG~iv~n~-~~~~Th~Ia~~~~~~----k~~~a~~~~-~VV~p~WV~dCi~ 728 (1159)
.+|...|+-... ...+--+|.+-+..-|++-.|.- .-.+||.|+.+-.+. ..-.++..+ |||+|+||..|--
T Consensus 162 msgitvclgpldplkeisdlqisqclshigarplqrhvaidtthfvcndldneesneelirakhnnipivrpewvracev 241 (290)
T 4gns_A 162 MSGITVCLGPLDPLKEISDLQISQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELIRAKHNNIPIVRPEWVRACEV 241 (290)
T ss_dssp CTTCCEEECCCCGGGTCCHHHHHHHHHHTTCCCCBSSCCTTCCEEECSCCTTCTTCHHHHHHHHTTCCEECTHHHHHHHH
T ss_pred ccCceEEecCCChhhhhhhccHHHHHHHhCCchhhheeeeecceeeecCCCcccchHHHHhhhccCCCccCHHHHHHHhh
Confidence 456677863322 23444566666777788776543 235799998764322 333344444 9999999999999
Q ss_pred cCccCCCCcccc
Q 001089 729 QKKLLQLQPKYY 740 (1159)
Q Consensus 729 ~~~lLp~~p~~~ 740 (1159)
.++++-++..|+
T Consensus 242 ekrivgvrgfyl 253 (290)
T 4gns_A 242 EKRIVGVRGFYL 253 (290)
T ss_dssp TTSCCCSGGGBT
T ss_pred hheeeeeeeEEE
Confidence 999999887554
No 109
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.11 E-value=1.3 Score=44.29 Aligned_cols=95 Identities=17% Similarity=0.297 Sum_probs=62.5
Q ss_pred cCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEc-cCC-CceEEEEeccCCcccchhhHHHHHHHHhhhh
Q 001089 802 CFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCN-NLA-NATHVVVLSVLGYDVNFNSLTESFTAREKHL 879 (1159)
Q Consensus 802 lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~-~ls-~vTHVIV~~~~~~~~~~~~l~~~l~~~~~~~ 879 (1159)
=++|.++|+-...+ . ..|+++ .+...+.--|+.-.. ... +.||.|+.+-++...+-+-+|.. |
T Consensus 161 dmsgitvclgpldp-l----keisdl---qisqclshigarplqrhvaidtthfvcndldneesneelirak------h- 225 (290)
T 4gns_A 161 DMSGITVCLGPLDP-L----KEISDL---QISQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELIRAK------H- 225 (290)
T ss_dssp CCTTCCEEECCCCG-G----GTCCHH---HHHHHHHHTTCCCCBSSCCTTCCEEECSCCTTCTTCHHHHHHH------H-
T ss_pred cccCceEEecCCCh-h----hhhhhc---cHHHHHHHhCCchhhheeeeecceeeecCCCcccchHHHHhhh------c-
Confidence 37788999876543 1 123333 345566666665433 334 69999998755433333323321 1
Q ss_pred ccCCccEEecccHHHHHHHcCCccCCCCCCCCCCC
Q 001089 880 LWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTG 914 (1159)
Q Consensus 880 ~~~~~~~IVs~~WL~~ci~~g~~v~E~~Y~v~~~~ 914 (1159)
..+.||+++|+..|--+.++|.-..|.+...+
T Consensus 226 ---nnipivrpewvracevekrivgvrgfyldadq 257 (290)
T 4gns_A 226 ---NNIPIVRPEWVRACEVEKRIVGVRGFYLDADQ 257 (290)
T ss_dssp ---TTCCEECTHHHHHHHHTTSCCCSGGGBTTSCG
T ss_pred ---cCCCccCHHHHHHHhhhheeeeeeeEEEcccH
Confidence 35789999999999999999999998877665
No 110
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=84.34 E-value=0.73 Score=55.96 Aligned_cols=85 Identities=21% Similarity=0.310 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc-------cCCcccccccccCc-------cHH
Q 001089 125 TIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLK-------LGISEKSIFHEFHP-------DAE 190 (1159)
Q Consensus 125 Ti~eVn~~Ld~LA~~~~~~~k~~il~~ll~~~s~~E~k~l~RiIlkdLr-------iGi~e~til~~~hp-------da~ 190 (1159)
...++-+++++|+..+++.+|..+|..+|..+++.+..|.++++++.|- +|++++++.+++.. ...
T Consensus 2 ~f~~~a~~~~~l~~t~~r~~k~~~l~~~~~~~~~~d~~~~~~ll~~~l~P~~~~~~~gi~~~~L~~~~~~~~g~~~~~~~ 81 (561)
T 2cfm_A 2 RYLELAQLYQKLEKTTMKLIKTRLVADFLKKVPDDHLEFIPYLILGEVFPEWDERELGVGEKLLIKAVAMATGIDAKEIE 81 (561)
T ss_dssp BHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHSCGGGTTTHHHHHTTCSSCTTCCCCCCCCHHHHHHHHHHHHSCCHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCchHHHHHHHHHhCCCCccccccccCCCHHHHHHHHHHHHCcCHHHHH
Confidence 4567888899999999999999999999999999999999999987663 69999998876532 245
Q ss_pred HHhhhcCCHHHHHHHHhhh
Q 001089 191 DLFNVTCDLKLVCEKLKDR 209 (1159)
Q Consensus 191 ~~~~~~~dL~~V~~~L~~~ 209 (1159)
..|....||+.++..+...
T Consensus 82 ~~~~~~GDlg~~~~~~~~~ 100 (561)
T 2cfm_A 82 ESVKDTGDLGESIALAVKK 100 (561)
T ss_dssp HHHHHHSCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHhcc
Confidence 6788899999999988753
No 111
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Probab=84.12 E-value=1.1 Score=54.40 Aligned_cols=85 Identities=18% Similarity=0.363 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCHH-HHHHHHHHHHhhhc-------cCCcccccccccC-------cc
Q 001089 124 LTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQ-EMKWIIMIILKDLK-------LGISEKSIFHEFH-------PD 188 (1159)
Q Consensus 124 LTi~eVn~~Ld~LA~~~~~~~k~~il~~ll~~~s~~-E~k~l~RiIlkdLr-------iGi~e~til~~~h-------pd 188 (1159)
+...++-+++++|+..+++.+|..+|+.+|...+|. +.-++++++++.+. +|++++++.+++. ..
T Consensus 4 m~~~~~a~~~~~i~~t~~r~~k~~~l~~~~~~~~~~~~~~~~~~l~~g~~~p~~~~~~~gi~~~~l~~~~~~~~g~~~~~ 83 (558)
T 3gde_A 4 MLFAEFAEFCERLEKISSTLELTARIAAFLQKIEDERDLYDVVLFITGKVYPPWDERELGVGIGLLYEALENVSGVKRSE 83 (558)
T ss_dssp CBHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTCSSCTTSSCCCCCCHHHHHHHHHHHHCCCHHH
T ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCchhhHHHHHHHHcCCCCcccccceeCcChHHHHHHHHHHHCcCHHH
Confidence 567888899999999999999999999999999987 88999999987663 6999998876542 12
Q ss_pred HHHHhhhcCCHHHHHHHHhh
Q 001089 189 AEDLFNVTCDLKLVCEKLKD 208 (1159)
Q Consensus 189 a~~~~~~~~dL~~V~~~L~~ 208 (1159)
..+.|....||+.++..+..
T Consensus 84 ~~~~~~~~GDlg~~a~~~~~ 103 (558)
T 3gde_A 84 IESMIREYGDLGLVAEQLIK 103 (558)
T ss_dssp HHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHh
Confidence 45678889999999988754
No 112
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=80.20 E-value=2.3 Score=42.43 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=40.4
Q ss_pred CCcCC-CeEEEEcCCCCCCCCchHHH-HHHHHHHHHHHHHhcCCEEEccCC-CceEEEEeccC
Q 001089 800 WSCFH-GCCIYFYHSTEPLSPDWEVL-LGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVL 859 (1159)
Q Consensus 800 ~~lF~-gc~~yl~~~~~~~~~d~~~i-~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVIV~~~~ 859 (1159)
..+|. +++|||+............. .+-...+|++.+..+|+++..-++ +|||||...+.
T Consensus 56 Rkifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R~i 118 (160)
T 3qbz_A 56 KKIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSV 118 (160)
T ss_dssp HHHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESSCS
T ss_pred HHhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecCcC
Confidence 45798 89999998643211111110 112235577888999999999998 69999997654
No 113
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=79.16 E-value=1.5 Score=54.54 Aligned_cols=87 Identities=14% Similarity=0.281 Sum_probs=72.0
Q ss_pred CCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh---CCHHHHHHHHHHHHhhh-------ccCCcccccccccCc---
Q 001089 121 SGGLTIKELNDLLDRLASSENRAEKISVLSTLIKK---TNAQEMKWIIMIILKDL-------KLGISEKSIFHEFHP--- 187 (1159)
Q Consensus 121 ~~~LTi~eVn~~Ld~LA~~~~~~~k~~il~~ll~~---~s~~E~k~l~RiIlkdL-------riGi~e~til~~~hp--- 187 (1159)
.+++...++-+++++|+..+++.+|..+|..+|.. ++|.++-|.+.++++.| .+||+++++.+++..
T Consensus 53 ~~~~~~~~la~~~~~i~~t~~r~~k~~~l~~~~~~~~~~~~~dl~~~v~ll~g~l~P~~~~~elgi~~~~L~k~i~~~~g 132 (688)
T 1x9n_A 53 GQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATG 132 (688)
T ss_dssp TSCCBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTCSSCGGGCCCCCCCHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcCChHHHHHHHHHHcCCCCccccccccCcChHHHHHHHHHHHC
Confidence 35788999999999999999999999999999998 79999999999999775 479999998875532
Q ss_pred ----cHHHHhhhcCCHHHHHHHHh
Q 001089 188 ----DAEDLFNVTCDLKLVCEKLK 207 (1159)
Q Consensus 188 ----da~~~~~~~~dL~~V~~~L~ 207 (1159)
...+.|....||+.|+..+.
T Consensus 133 ~~~~~~~~~~~~~GDlg~va~~~~ 156 (688)
T 1x9n_A 133 RQLESVRAEAAEKGDVGLVAENSR 156 (688)
T ss_dssp CCHHHHHHHHHHHTCHHHHTCC--
T ss_pred cCHHHHHHHHHhcCCHHHHHHHHH
Confidence 24566888899999886553
No 114
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=78.73 E-value=2 Score=46.22 Aligned_cols=71 Identities=13% Similarity=0.245 Sum_probs=48.0
Q ss_pred HHHHHhcCCEEEccCC---CceEEEEeccCCcccchhhHHHHHHHHhhhhccCCccEEecccHHHHHHHc---CC-----
Q 001089 833 KLEISFHGGKVCNNLA---NATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAK---EQ----- 901 (1159)
Q Consensus 833 ~~~I~~~GG~v~~~ls---~vTHVIV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~IVs~~WL~~ci~~---g~----- 901 (1159)
.+.++..|=+++++++ .|+|||.+... ++. +-| .+| ....--+||+++||.+|++. |.
T Consensus 40 ~~~Lr~LGI~Iv~d~~~~~~~n~LiAPkil-RT~--KFL-~sL-------a~~P~~~il~p~FI~~~Lk~ih~~~~~~~~ 108 (256)
T 3t7k_A 40 IEILNQLGIKIFDNIKETDKLNCIFAPKIL-RTE--KFL-KSL-------SFEPLKFALKPEFIIDLLKQIHSKKDKLSQ 108 (256)
T ss_dssp HHHHHHTTEEECSSCCGGGCCCEEECSSCC-CBH--HHH-HHT-------TSTTCCEEECTHHHHHHHHHHC-------C
T ss_pred HHHHHHcCeEEEecCcccCCCCEEEcCchh-hHH--HHH-HHh-------ccCccceEeCHHHHHHHHHHhhcCCccccc
Confidence 4578899999999994 69999998643 211 111 122 11112269999999999988 77
Q ss_pred -ccCCCCCCCCCCC
Q 001089 902 -KSEEYEYSLKPTG 914 (1159)
Q Consensus 902 -~v~E~~Y~v~~~~ 914 (1159)
+++.++|.++-..
T Consensus 109 ~~l~~~dY~L~d~~ 122 (256)
T 3t7k_A 109 ININLFDYEINGIN 122 (256)
T ss_dssp CCCCSSTTBCTTCC
T ss_pred ccCChhhccCCCcc
Confidence 8888889865544
No 115
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=77.11 E-value=4.8 Score=39.89 Aligned_cols=61 Identities=15% Similarity=0.091 Sum_probs=40.2
Q ss_pred CCCcC-CCeEEEEcCCCCCCCCc-hHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEeccC
Q 001089 799 KWSCF-HGCCIYFYHSTEPLSPD-WEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVL 859 (1159)
Q Consensus 799 ~~~lF-~gc~~yl~~~~~~~~~d-~~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVIV~~~~ 859 (1159)
+..|. ++-+|||+......... ...-...+.++|++.+...||+|..-++ +|||||...+.
T Consensus 17 WrkIM~r~s~iYFdt~~~~~~~~~~~~~l~k~~~llkk~f~~LGa~I~~FFd~~VTiIITrR~~ 80 (151)
T 3oq0_A 17 RGSHMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSV 80 (151)
T ss_dssp ----CCCCCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEESSCCTTCCEEEESSCG
T ss_pred HHHHhccCCEEEEeCCCcchhhHHHHHHHHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCCcC
Confidence 45677 89999999754211111 1111234567888999999999999998 69999987543
No 116
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=70.63 E-value=9.4 Score=37.11 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=38.3
Q ss_pred CCeEEEEcCCCCCCCCch-HHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEeccC
Q 001089 804 HGCCIYFYHSTEPLSPDW-EVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVL 859 (1159)
Q Consensus 804 ~gc~~yl~~~~~~~~~d~-~~i~~~~~~~l~~~I~~~GG~v~~~ls-~vTHVIV~~~~ 859 (1159)
+...|||+.......... ..-.+-..++|++.+...||+|..-++ +|||||...+.
T Consensus 6 r~s~iyfd~~~~~~~~~~~~~k~~k~~~llk~~f~~LGa~I~~FFd~~VTiiITrR~~ 63 (134)
T 3oq4_A 6 RDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSV 63 (134)
T ss_dssp TTCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESSCG
T ss_pred ccceEEecCCchHHHHHHHHHhhHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCCcC
Confidence 456799998643110111 111223568899999999999999998 69999987543
No 117
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=67.77 E-value=7.1 Score=43.49 Aligned_cols=58 Identities=14% Similarity=0.179 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCEEEccC-C-CceEEEEeccCCcccchhhHHHHHHHHhhhhccCCccEEecccHHHHHHH
Q 001089 830 RRLKLEISFHGGKVCNNL-A-NATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLA 898 (1159)
Q Consensus 830 ~~l~~~I~~~GG~v~~~l-s-~vTHVIV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~IVs~~WL~~ci~ 898 (1159)
..|+..+..+||.++ +. . .|||||+..-.......+-|+.-+ ...+||+++||.+...
T Consensus 127 ~~L~~~L~~LGik~v-~~~~detTHlVm~krnT~KvTvK~L~ALI----------~gkPIV~~~Fl~al~~ 186 (325)
T 3huf_A 127 SQWASNLNLLGIPTG-LRDSDATTHFVMNRQAGSSITVGTMYAFL----------KKTVIIDDSYLQYLST 186 (325)
T ss_dssp HHHHHHHHTTTCCEE-SSCCTTCCEEECCCCCSSCCCHHHHHHHH----------TTCEEECHHHHHHHTT
T ss_pred HHHHHHHHHcCCEEE-EccCCCEEEEEEeccccccchHHHHHHHH----------CCCcEecHHHHHHHHH
Confidence 358889999999999 55 4 499999964222222223333211 2458999999999754
No 118
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=57.39 E-value=12 Score=40.15 Aligned_cols=87 Identities=22% Similarity=0.308 Sum_probs=64.5
Q ss_pred CCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-------------CHHHHHHHHHHHHhhh-----ccCCccccccc
Q 001089 122 GGLTIKELNDLLDRLASSENRAEKISVLSTLIKKT-------------NAQEMKWIIMIILKDL-----KLGISEKSIFH 183 (1159)
Q Consensus 122 ~~LTi~eVn~~Ld~LA~~~~~~~k~~il~~ll~~~-------------s~~E~k~l~RiIlkdL-----riGi~e~til~ 183 (1159)
.++.-.++-++|++|...+++.+|..+|..+|... .+...-.++|+|+=+. ..|++++++.+
T Consensus 12 ~~~~F~~l~~~~e~Ie~ts~rl~k~~il~~f~~~~~~~~~~l~~~~~~~~~dly~~l~ll~P~~d~~r~~ygi~e~~L~K 91 (240)
T 4htp_A 12 SHVPFADLCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDALHKNHKDVTDSFYPAMRLILPQLERERMAYGIKETMLAK 91 (240)
T ss_dssp GTSBHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTTTCSSCCCCSHHHHHHHSGGGCCSSCCCCCCHHHHHH
T ss_pred cCCcHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccccccCcccCcchHHHHHHHhCccccccccccCCCHHHHHH
Confidence 46788899999999999999999999999999873 3556788888888764 38999999887
Q ss_pred cc----C--c---cHHHH---------hhhcCCHHHHHHHHhh
Q 001089 184 EF----H--P---DAEDL---------FNVTCDLKLVCEKLKD 208 (1159)
Q Consensus 184 ~~----h--p---da~~~---------~~~~~dL~~V~~~L~~ 208 (1159)
++ + + ++..+ |.-..||+.||..+..
T Consensus 92 ai~~~~g~~~~~~~~~~L~~wk~~~~~~~~~GDlg~va~~~~~ 134 (240)
T 4htp_A 92 LYIELLNLPRDGKDALKLLNYRTPTGTHGDAGDFAMIAYFVLK 134 (240)
T ss_dssp HHHHHTTCCTTSHHHHHHHTC----------CCHHHHHHHHHT
T ss_pred HHHHHHCCCcchHHHHHHHhccccccccccCCCHHHHHHHHHH
Confidence 54 2 1 23223 4456799999988753
No 119
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=42.46 E-value=60 Score=39.33 Aligned_cols=86 Identities=14% Similarity=0.151 Sum_probs=65.7
Q ss_pred CCCcHHHHHHHHHHHHhhCChHHHHHHHHHHHhhcCCCchHHHHHHHhCCCCCCCccccCCCHHHHHHHHHHHhCCCcCh
Q 001089 5 EETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDS 84 (1159)
Q Consensus 5 ~~~~F~~l~~lle~i~~~~~~~~K~~~l~~~l~~~~~~~d~~p~lrLllP~~d~~r~~ygike~~L~k~~~~~lgl~~~s 84 (1159)
+++.-.++-+.|++|...++...+..+|..+|.+. .+.+.-.++|+|+.++. .|++++++..+++.
T Consensus 116 ~~LTv~~V~~~L~~ia~~~g~~sq~~~l~~l~~~~-~~~E~k~l~R~i~~~lr-----iG~~e~~vl~a~~~-------- 181 (579)
T 3l2p_A 116 SLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRC-TANDLKCIIRLIKHDLK-----MNSGAKHVLDALDP-------- 181 (579)
T ss_dssp CCCBHHHHHHHHHHHHTCCSHHHHHHHHHHHHTTC-CSHHHHHHHHHHTTCCS-----SSCCHHHHHHTTCT--------
T ss_pred CCccHHHHHHHHHHHHhccCcHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhhh-----cccchhHHHHHhCH--------
Confidence 46788999999999999998877788999998765 57889999999998883 59999888776642
Q ss_pred HHHHHHhhhhcCCCCCCCCCHHHHHHHHh
Q 001089 85 ADAVRLINWRKGGAAPNAGNFPMVAAEVL 113 (1159)
Q Consensus 85 ~~~~~L~~wk~~~~~~~~GD~~~~a~~vl 113 (1159)
++.++.+ .++||+.++..++
T Consensus 182 -~a~~~~~--------~~~~l~~v~~~~~ 201 (579)
T 3l2p_A 182 -NAYEAFK--------ASRNLQDVVERVL 201 (579)
T ss_dssp -THHHHHH--------HSCCHHHHHHHHH
T ss_pred -HHHHHHh--------hcCCHHHHHHHHH
Confidence 2323322 2468888776654
No 120
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=36.10 E-value=32 Score=34.35 Aligned_cols=49 Identities=16% Similarity=0.252 Sum_probs=35.4
Q ss_pred Cccc-CeEEEEEcCCCC-CC---hHH-------HHHHHHHcCCEEEecCCCCceEEEEecC
Q 001089 655 SIFS-DMVFYFVNVPPA-YS---LDS-------LHKMVVENGGTFSMNLNNSVTHCVAADN 703 (1159)
Q Consensus 655 ~lF~-G~~F~vv~~~~~-~~---k~e-------Le~lI~~~GG~iv~n~~~~~Th~Ia~~~ 703 (1159)
.+|. ++.||+-+.++. .. +.+ +.+-+...|+++++-++..+||+|..-+
T Consensus 57 kifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R~ 117 (160)
T 3qbz_A 57 KIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRS 117 (160)
T ss_dssp HHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESSC
T ss_pred HhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecCc
Confidence 6887 899998665432 22 222 3356679999999999989999997544
No 121
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=23.98 E-value=31 Score=23.59 Aligned_cols=16 Identities=50% Similarity=0.775 Sum_probs=12.4
Q ss_pred cccccCCCCCCCcccc
Q 001089 969 GKRKRGRPAGGSAKKR 984 (1159)
Q Consensus 969 ~~~~~~~~~~~~~~~~ 984 (1159)
.+|-||||.|+-+|..
T Consensus 4 pKrpRgRpkGSKNk~~ 19 (26)
T 2ezd_A 4 PKRPRGRPKGSKNKGA 19 (26)
T ss_dssp CCCCSSCCTTCCCCSC
T ss_pred CcCCCCCcCcccccCc
Confidence 3678999999877654
No 122
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=23.79 E-value=76 Score=30.17 Aligned_cols=34 Identities=35% Similarity=0.546 Sum_probs=27.1
Q ss_pred CCcccCeEEEEEcCCCCCChHHHHHHHHHcCCEEEec
Q 001089 654 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMN 690 (1159)
Q Consensus 654 s~lF~G~~F~vv~~~~~~~k~eLe~lI~~~GG~iv~n 690 (1159)
..||+|.+|++++.. ....|..+|...||...-.
T Consensus 11 ~~LF~GKtFvFLn~K---Q~kkl~~aV~~~GG~~~l~ 44 (118)
T 2k2w_A 11 KSIFKDKVFLFLNAK---QYKKLSPAVLFGGGKTDLL 44 (118)
T ss_dssp SCSSTTCEEEESCSS---THHHHHHHHHHTTCEEECC
T ss_pred HhhccCCEEEEeCHH---HHHHHHHHHHhcCceEEec
Confidence 469999999998653 3567888999999998643
No 123
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=20.14 E-value=1.1e+02 Score=29.09 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=28.8
Q ss_pred CCCcCCCeEEEEcCCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEcc
Q 001089 799 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNN 846 (1159)
Q Consensus 799 ~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ 846 (1159)
...||+|-+|.|..-.. ..+|...|.++||.+...
T Consensus 10 ~~~LF~GKtFvFLn~KQ-------------~kkl~~aV~~~GG~~~l~ 44 (118)
T 2k2w_A 10 RKSIFKDKVFLFLNAKQ-------------YKKLSPAVLFGGGKTDLL 44 (118)
T ss_dssp CSCSSTTCEEEESCSST-------------HHHHHHHHHHTTCEEECC
T ss_pred HHhhccCCEEEEeCHHH-------------HHHHHHHHHhcCceEEec
Confidence 34689999999997542 568899999999999775
Done!