Query 001090
Match_columns 1159
No_of_seqs 339 out of 784
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 10:31:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d7c_A General control of amin 99.8 4.3E-19 1.5E-23 168.0 11.4 103 1045-1151 7-109 (112)
2 2dat_A Possible global transcr 99.8 5.9E-19 2E-23 169.9 11.5 111 1042-1152 10-122 (123)
3 3ljw_A Protein polybromo-1; al 99.8 2.5E-19 8.5E-24 171.7 7.7 82 1070-1151 35-116 (120)
4 3nxb_A CAT eye syndrome critic 99.8 8.4E-19 2.9E-23 166.8 8.9 99 1046-1148 17-115 (116)
5 3mb4_A Protein polybromo-1; PB 99.8 1.7E-18 6E-23 166.7 11.2 107 1045-1151 15-123 (124)
6 4alg_A Bromodomain-containing 99.8 2.2E-18 7.4E-23 172.3 11.9 85 1070-1154 53-139 (154)
7 2oss_A HUNK1 protein, bromodom 99.8 2.1E-18 7.1E-23 167.2 11.4 83 1070-1152 42-126 (127)
8 2grc_A Probable global transcr 99.8 2.2E-18 7.6E-23 167.3 11.2 109 1042-1150 8-119 (129)
9 3iu5_A Protein polybromo-1; PB 99.8 1.5E-18 5.1E-23 165.2 9.2 82 1070-1151 32-113 (116)
10 3k2j_A Protein polybromo-1; PB 99.8 1.7E-18 5.9E-23 168.7 9.8 82 1070-1151 44-125 (130)
11 3g0l_A Hwalp4, bromodomain adj 99.8 2.1E-18 7.1E-23 164.3 10.0 81 1069-1149 33-113 (117)
12 3p1f_A CREB-binding protein; s 99.7 2.6E-18 8.8E-23 164.1 10.6 103 1044-1149 10-114 (119)
13 3tlp_A Protein polybromo-1; PB 99.7 1.6E-18 5.5E-23 171.6 9.4 81 1070-1150 52-132 (150)
14 3mqm_A Probable histone-lysine 99.7 2E-18 6.9E-23 166.4 9.8 80 1070-1149 36-115 (126)
15 1e6i_A Transcriptional activat 99.7 2.5E-18 8.7E-23 165.2 9.9 83 1070-1152 34-116 (121)
16 2i7k_A Bromodomain-containing 99.7 2.6E-18 8.8E-23 164.7 9.8 86 1070-1155 29-114 (117)
17 3jvl_A Bromodomain-containing 99.7 4.1E-18 1.4E-22 162.9 10.8 83 1070-1152 33-117 (120)
18 2ri7_A Nucleosome-remodeling f 99.7 3.6E-18 1.2E-22 171.6 10.8 107 1041-1151 68-174 (174)
19 2ouo_A HUNK1 protein, bromodom 99.7 3.3E-18 1.1E-22 166.4 9.2 82 1071-1152 47-130 (130)
20 3q2e_A Bromodomain and WD repe 99.7 7.4E-18 2.5E-22 162.1 9.8 102 1045-1150 10-112 (123)
21 3fkm_X Signaling protein; brom 99.7 1.4E-17 4.7E-22 168.3 12.2 106 1041-1150 17-124 (166)
22 2yyn_A Transcription intermedi 99.7 1.3E-17 4.6E-22 163.1 11.6 107 1041-1152 16-124 (135)
23 2d9e_A Peregrin; four-helix bu 99.7 6.2E-18 2.1E-22 162.7 8.9 81 1070-1150 28-108 (121)
24 3mb3_A PH-interacting protein; 99.7 1.2E-17 4.1E-22 162.8 10.3 102 1045-1150 21-123 (135)
25 3rcw_A Bromodomain-containing 99.7 1.4E-17 4.6E-22 162.4 9.8 100 1046-1149 14-113 (135)
26 3hme_A Bromodomain-containing 99.7 1.7E-17 5.9E-22 159.9 9.4 79 1070-1148 34-112 (123)
27 3uv4_A Second bromodomain of h 99.7 5.4E-17 1.9E-21 163.0 11.0 81 1070-1150 51-131 (158)
28 3o36_A Transcription intermedi 99.7 1.7E-16 5.7E-21 161.5 11.5 105 1041-1150 77-183 (184)
29 3dai_A ATPase family AAA domai 99.7 2.7E-16 9.1E-21 152.8 11.9 78 1070-1147 31-112 (130)
30 3uv5_A Transcription initiatio 99.6 1.5E-15 5.2E-20 162.7 11.8 81 1070-1150 158-238 (265)
31 3uv5_A Transcription initiatio 99.6 1.2E-15 4.1E-20 163.6 10.8 102 1045-1150 14-115 (265)
32 2ro1_A Transcription intermedi 99.6 1.6E-15 5.6E-20 155.9 10.8 104 1041-1153 72-180 (189)
33 2dkw_A Hypothetical protein KI 99.6 2.8E-15 9.5E-20 146.5 11.9 70 1079-1148 37-110 (131)
34 3u5n_A E3 ubiquitin-protein li 99.6 1.4E-15 4.7E-20 157.7 10.0 108 1041-1153 77-204 (207)
35 2r10_A Chromatin structure-rem 99.6 2.4E-15 8.3E-20 167.9 10.9 80 1070-1149 234-313 (361)
36 2r0y_A Chromatin structure-rem 99.6 9.9E-16 3.4E-20 168.2 7.5 80 1070-1149 184-263 (311)
37 3aad_A Transcription initiatio 99.6 8.3E-15 2.8E-19 159.4 11.2 81 1070-1150 191-271 (292)
38 3aad_A Transcription initiatio 99.5 4.7E-15 1.6E-19 161.3 7.7 80 1070-1149 68-147 (292)
39 2r0y_A Chromatin structure-rem 99.5 1.5E-14 5.1E-19 158.9 8.7 79 1070-1149 51-129 (311)
40 2r10_A Chromatin structure-rem 99.5 3.1E-14 1.1E-18 159.0 8.3 79 1070-1149 101-179 (361)
41 3iu6_A Protein polybromo-1; PB 99.4 1E-12 3.4E-17 131.3 10.6 76 1070-1149 34-109 (147)
42 3lqh_A Histone-lysine N-methyl 99.0 3.2E-10 1.1E-14 116.8 8.0 67 1086-1152 101-167 (183)
43 4h5i_A Guanine nucleotide-exch 98.7 1.7E-08 6E-13 108.7 7.7 58 1-58 285-343 (365)
44 4ggc_A P55CDC, cell division c 98.7 2.2E-08 7.4E-13 101.2 6.8 57 2-58 259-315 (318)
45 3vu4_A KMHSV2; beta-propeller 98.6 9.4E-08 3.2E-12 102.2 8.3 60 1-60 211-273 (355)
46 2xzm_R RACK1; ribosome, transl 98.5 9.3E-08 3.2E-12 100.8 7.0 57 1-57 92-148 (343)
47 4ggc_A P55CDC, cell division c 98.5 1E-07 3.6E-12 96.2 7.0 59 2-60 40-100 (318)
48 2ynn_A Coatomer subunit beta'; 98.5 1.7E-07 5.7E-12 97.4 7.5 60 1-60 202-261 (304)
49 2ynn_A Coatomer subunit beta'; 98.5 1.8E-07 6E-12 97.3 6.9 59 1-59 71-129 (304)
50 3frx_A Guanine nucleotide-bind 98.4 2E-07 6.8E-12 97.8 7.1 57 1-57 81-137 (319)
51 4gga_A P55CDC, cell division c 98.4 2.9E-07 9.9E-12 99.7 7.9 57 3-59 340-396 (420)
52 4gqb_B Methylosome protein 50; 98.4 2E-07 6.8E-12 100.5 6.3 61 1-61 97-161 (344)
53 3ow8_A WD repeat-containing pr 98.4 2.9E-07 9.8E-12 97.3 7.3 60 1-60 222-281 (321)
54 1got_B GT-beta; complex (GTP-b 98.4 2.9E-07 9.8E-12 97.2 7.1 60 1-60 200-259 (340)
55 3f3f_A Nucleoporin SEH1; struc 98.4 2.6E-07 9E-12 92.5 6.4 60 1-60 234-339 (351)
56 3ow8_A WD repeat-containing pr 98.4 3.4E-07 1.2E-11 96.8 7.2 60 1-60 180-239 (321)
57 3frx_A Guanine nucleotide-bind 98.4 3.9E-07 1.3E-11 95.6 7.3 60 1-60 170-229 (319)
58 4g56_B MGC81050 protein; prote 98.4 3E-07 1E-11 98.6 6.6 58 1-59 286-344 (357)
59 4aow_A Guanine nucleotide-bind 98.4 4.2E-07 1.4E-11 92.7 7.2 60 1-60 189-248 (340)
60 3zwl_B Eukaryotic translation 98.4 4.5E-07 1.6E-11 92.6 7.4 60 1-60 48-107 (369)
61 4aow_A Guanine nucleotide-bind 98.4 4.7E-07 1.6E-11 92.3 7.2 60 1-60 55-119 (340)
62 1got_B GT-beta; complex (GTP-b 98.4 4.7E-07 1.6E-11 95.6 7.5 60 1-60 158-217 (340)
63 3iz6_a 40S ribosomal protein R 98.4 3.3E-07 1.1E-11 98.5 6.2 60 1-60 222-282 (380)
64 4gga_A P55CDC, cell division c 98.3 4.3E-07 1.5E-11 98.4 6.9 59 2-60 120-180 (420)
65 1vyh_C Platelet-activating fac 98.3 3E-07 1E-11 100.2 5.8 60 1-60 124-183 (410)
66 2pbi_B Guanine nucleotide-bind 98.3 5E-07 1.7E-11 96.5 7.3 59 1-59 214-272 (354)
67 1erj_A Transcriptional repress 98.3 5.2E-07 1.8E-11 97.4 7.3 60 1-60 139-198 (393)
68 4gqb_B Methylosome protein 50; 98.3 5.8E-07 2E-11 96.9 7.6 61 1-61 143-204 (344)
69 1vyh_C Platelet-activating fac 98.3 4.8E-07 1.6E-11 98.6 7.0 60 1-60 312-371 (410)
70 4ery_A WD repeat-containing pr 98.3 7.1E-07 2.4E-11 91.7 7.5 60 1-60 39-98 (312)
71 2ymu_A WD-40 repeat protein; u 98.3 5E-07 1.7E-11 100.1 6.5 56 1-57 32-87 (577)
72 3vl1_A 26S proteasome regulato 98.3 5.2E-07 1.8E-11 95.6 6.3 60 1-60 155-214 (420)
73 4ery_A WD repeat-containing pr 98.3 8.3E-07 2.8E-11 91.2 7.4 60 1-60 123-182 (312)
74 3iz6_a 40S ribosomal protein R 98.3 4.6E-07 1.6E-11 97.3 5.7 59 1-59 82-140 (380)
75 4gq1_A NUP37; propeller, trans 98.3 6.4E-07 2.2E-11 97.1 6.6 58 2-59 334-391 (393)
76 3k26_A Polycomb protein EED; W 98.3 8.3E-07 2.9E-11 90.9 7.0 60 1-60 89-149 (366)
77 3mmy_A MRNA export factor; mRN 98.3 8.8E-07 3E-11 90.5 7.0 60 1-60 58-119 (368)
78 3lrv_A PRE-mRNA-splicing facto 98.3 8.8E-07 3E-11 93.2 7.2 61 1-61 143-204 (343)
79 3fm0_A Protein CIAO1; WDR39,SG 98.3 9.8E-07 3.4E-11 93.5 7.6 60 1-60 77-138 (345)
80 3odt_A Protein DOA1; ubiquitin 98.3 1E-06 3.5E-11 88.5 7.3 59 1-60 199-257 (313)
81 4gq1_A NUP37; propeller, trans 98.3 6.6E-07 2.2E-11 97.0 6.0 60 1-60 160-220 (393)
82 2aq5_A Coronin-1A; WD40 repeat 98.2 9.3E-07 3.2E-11 94.5 6.8 60 1-60 148-209 (402)
83 3f3f_A Nucleoporin SEH1; struc 98.2 1.6E-06 5.3E-11 87.0 7.7 60 1-60 75-145 (351)
84 3odt_A Protein DOA1; ubiquitin 98.2 1.3E-06 4.3E-11 87.8 6.8 59 1-60 240-298 (313)
85 3dw8_B Serine/threonine-protei 98.2 1.4E-06 4.7E-11 92.9 7.2 59 1-60 243-318 (447)
86 3lrv_A PRE-mRNA-splicing facto 98.2 1.8E-06 6.3E-11 90.7 8.1 60 1-61 186-247 (343)
87 2xzm_R RACK1; ribosome, transl 98.2 1.4E-06 4.8E-11 91.8 7.2 60 1-60 43-109 (343)
88 3k26_A Polycomb protein EED; W 98.2 1.3E-06 4.4E-11 89.5 6.7 60 1-60 132-194 (366)
89 3vl1_A 26S proteasome regulato 98.2 1.3E-06 4.3E-11 92.6 6.6 60 1-60 113-172 (420)
90 2hes_X YDR267CP; beta-propelle 98.2 1.3E-06 4.5E-11 92.0 6.7 57 1-57 74-137 (330)
91 3gre_A Serine/threonine-protei 98.2 1.5E-06 5.2E-11 93.3 7.0 60 1-60 186-247 (437)
92 2pm9_A Protein WEB1, protein t 98.2 1.4E-06 4.9E-11 91.6 6.5 60 1-60 279-339 (416)
93 1nr0_A Actin interacting prote 98.2 1.5E-06 5.2E-11 99.7 7.2 60 1-60 164-223 (611)
94 2pbi_B Guanine nucleotide-bind 98.2 2E-06 6.7E-11 92.0 7.5 60 1-60 170-231 (354)
95 2pm7_B Protein transport prote 98.2 1.6E-06 5.3E-11 89.9 6.4 58 1-58 174-238 (297)
96 4a11_B DNA excision repair pro 98.2 1.6E-06 5.3E-11 90.2 6.4 60 2-61 309-368 (408)
97 3bg1_A Protein SEC13 homolog; 98.2 1.5E-06 5.1E-11 91.0 6.2 59 1-59 75-137 (316)
98 1nr0_A Actin interacting prote 98.2 1.7E-06 5.7E-11 99.4 7.0 60 1-60 206-272 (611)
99 3v7d_B Cell division control p 98.2 1.9E-06 6.6E-11 93.2 7.1 59 1-60 136-194 (464)
100 3vu4_A KMHSV2; beta-propeller 98.2 2.3E-06 7.9E-11 91.5 7.5 59 2-60 154-229 (355)
101 1sq9_A Antiviral protein SKI8; 98.2 1.8E-06 6.2E-11 90.5 6.5 59 1-59 307-396 (397)
102 2pm7_B Protein transport prote 98.2 2E-06 6.9E-11 89.0 6.6 59 1-59 25-87 (297)
103 3dm0_A Maltose-binding peripla 98.1 2.1E-06 7.4E-11 99.5 7.4 61 1-61 535-595 (694)
104 3dm0_A Maltose-binding peripla 98.1 1.6E-06 5.5E-11 100.5 6.4 57 1-57 446-502 (694)
105 3dwl_C Actin-related protein 2 98.1 1.1E-06 3.9E-11 91.8 4.6 60 1-60 27-88 (377)
106 1gxr_A ESG1, transducin-like e 98.1 3E-06 1E-10 85.7 7.3 60 1-60 157-216 (337)
107 3fm0_A Protein CIAO1; WDR39,SG 98.1 2.4E-06 8.1E-11 90.6 6.7 56 1-56 166-223 (345)
108 3v7d_B Cell division control p 98.1 2.5E-06 8.5E-11 92.3 6.9 60 1-60 284-343 (464)
109 4g56_B MGC81050 protein; prote 98.1 1.7E-06 5.8E-11 92.8 5.5 60 1-60 243-303 (357)
110 3i2n_A WD repeat-containing pr 98.1 2.6E-06 8.9E-11 87.2 6.4 60 1-60 276-355 (357)
111 3dwl_C Actin-related protein 2 98.1 1.6E-06 5.4E-11 90.8 4.8 60 1-61 162-239 (377)
112 1erj_A Transcriptional repress 98.1 3.1E-06 1E-10 91.4 7.0 59 1-59 223-288 (393)
113 3zwl_B Eukaryotic translation 98.1 4E-06 1.4E-10 85.7 7.5 60 1-60 191-251 (369)
114 3bg1_A Protein SEC13 homolog; 98.1 2.8E-06 9.6E-11 89.0 6.4 59 1-59 29-91 (316)
115 2oit_A Nucleoporin 214KDA; NH2 98.1 2.6E-06 8.8E-11 95.2 6.3 57 1-57 166-222 (434)
116 1k8k_C P40, ARP2/3 complex 41 98.1 3.2E-06 1.1E-10 87.3 6.4 60 1-60 24-85 (372)
117 3jrp_A Fusion protein of prote 98.1 4E-06 1.4E-10 86.3 7.0 60 1-60 73-136 (379)
118 2aq5_A Coronin-1A; WD40 repeat 98.1 2.9E-06 9.9E-11 90.8 6.2 60 1-60 98-165 (402)
119 2ymu_A WD-40 repeat protein; u 98.1 3.3E-06 1.1E-10 93.6 6.3 55 1-56 483-537 (577)
120 4e54_B DNA damage-binding prot 98.1 3.3E-06 1.1E-10 92.2 6.2 59 1-59 136-197 (435)
121 1r5m_A SIR4-interacting protei 98.1 4.7E-06 1.6E-10 86.9 7.0 60 1-60 304-363 (425)
122 2ovr_B FBW7, F-BOX/WD repeat p 98.1 3.5E-06 1.2E-10 91.4 6.2 59 1-59 376-443 (445)
123 2hes_X YDR267CP; beta-propelle 98.0 4.6E-06 1.6E-10 87.9 6.7 59 1-59 169-231 (330)
124 1sq9_A Antiviral protein SKI8; 98.0 3.9E-06 1.3E-10 88.0 6.0 60 1-60 249-324 (397)
125 3jrp_A Fusion protein of prote 98.0 3.5E-06 1.2E-10 86.7 5.5 60 1-60 27-90 (379)
126 4aez_A CDC20, WD repeat-contai 98.0 5.6E-06 1.9E-10 88.9 7.2 60 1-60 107-167 (401)
127 1k8k_C P40, ARP2/3 complex 41 98.0 6.1E-06 2.1E-10 85.2 6.7 60 1-60 158-235 (372)
128 3i2n_A WD repeat-containing pr 98.0 4.3E-06 1.5E-10 85.6 5.5 60 1-60 84-150 (357)
129 3sfz_A APAF-1, apoptotic pepti 98.0 5.7E-06 1.9E-10 101.2 7.5 60 1-60 631-690 (1249)
130 3mkq_A Coatomer beta'-subunit; 98.0 4.8E-06 1.6E-10 96.3 6.5 60 1-60 29-88 (814)
131 3ei3_B DNA damage-binding prot 98.0 7.4E-06 2.5E-10 86.4 7.4 59 1-60 221-284 (383)
132 1pgu_A Actin interacting prote 98.0 6.9E-06 2.4E-10 90.8 7.4 79 1-80 504-600 (615)
133 3gre_A Serine/threonine-protei 98.0 4.8E-06 1.6E-10 89.4 5.9 60 1-60 230-294 (437)
134 2w18_A PALB2, fancn, partner a 98.0 4E-06 1.4E-10 94.2 5.3 61 1-61 197-272 (356)
135 3mmy_A MRNA export factor; mRN 98.0 7.3E-06 2.5E-10 83.7 6.6 59 1-60 102-162 (368)
136 4e54_B DNA damage-binding prot 98.0 2.6E-06 8.8E-11 93.0 3.4 60 1-60 267-329 (435)
137 2oaj_A Protein SNI1; WD40 repe 98.0 6.1E-06 2.1E-10 100.8 6.7 58 1-59 504-606 (902)
138 4h5i_A Guanine nucleotide-exch 98.0 8.7E-06 3E-10 87.7 7.0 57 2-60 152-208 (365)
139 2j04_B YDR362CP, TAU91; beta p 97.9 4.1E-06 1.4E-10 96.7 4.3 59 1-59 371-429 (524)
140 1r5m_A SIR4-interacting protei 97.9 1.1E-05 3.9E-10 84.0 7.0 59 1-60 124-182 (425)
141 1gxr_A ESG1, transducin-like e 97.9 1.4E-05 4.8E-10 80.9 7.2 60 1-60 113-174 (337)
142 1yfq_A Cell cycle arrest prote 97.9 9.3E-06 3.2E-10 83.1 5.9 60 1-60 210-284 (342)
143 3ei3_B DNA damage-binding prot 97.9 1.3E-05 4.3E-10 84.6 7.0 58 1-59 179-237 (383)
144 1yfq_A Cell cycle arrest prote 97.9 9.8E-06 3.4E-10 82.9 6.0 60 1-60 27-91 (342)
145 3mkq_A Coatomer beta'-subunit; 97.9 1.2E-05 4.2E-10 92.9 7.0 59 1-59 71-129 (814)
146 4a11_B DNA excision repair pro 97.9 1.2E-05 4.2E-10 83.5 6.3 60 1-60 160-220 (408)
147 3sfz_A APAF-1, apoptotic pepti 97.9 1.1E-05 3.8E-10 98.7 6.9 60 1-60 717-776 (1249)
148 4aez_A CDC20, WD repeat-contai 97.9 1.7E-05 5.7E-10 85.3 7.4 60 1-60 190-250 (401)
149 2vdu_B TRNA (guanine-N(7)-)-me 97.9 1.3E-05 4.5E-10 87.7 6.6 59 1-60 214-273 (450)
150 1pgu_A Actin interacting prote 97.9 1.6E-05 5.5E-10 87.9 7.4 60 1-60 177-240 (615)
151 2vdu_B TRNA (guanine-N(7)-)-me 97.9 1.5E-05 5.1E-10 87.2 6.9 60 1-60 119-182 (450)
152 3dw8_B Serine/threonine-protei 97.8 1.9E-05 6.5E-10 84.1 6.1 60 1-60 44-128 (447)
153 1p22_A F-BOX/WD-repeat protein 97.8 2.5E-05 8.4E-10 84.9 7.0 58 1-60 147-204 (435)
154 2ojh_A Uncharacterized protein 97.8 4.7E-05 1.6E-09 74.9 8.1 57 2-60 17-74 (297)
155 2pm9_A Protein WEB1, protein t 97.8 1.7E-05 5.7E-10 83.5 5.1 60 1-60 83-147 (416)
156 1l0q_A Surface layer protein; 97.8 3.4E-05 1.2E-09 81.1 7.4 60 1-61 6-66 (391)
157 2oaj_A Protein SNI1; WD40 repe 97.7 2.8E-05 9.7E-10 94.9 7.4 59 1-60 168-244 (902)
158 2j04_B YDR362CP, TAU91; beta p 97.7 2E-05 7E-10 90.9 5.7 60 1-60 281-344 (524)
159 2xyi_A Probable histone-bindin 97.7 2.6E-05 8.8E-10 85.2 5.7 58 1-58 294-353 (430)
160 1l0q_A Surface layer protein; 97.6 6.1E-05 2.1E-09 79.2 7.1 58 2-60 49-107 (391)
161 2ovr_B FBW7, F-BOX/WD repeat p 97.6 4.6E-05 1.6E-09 82.6 6.3 58 1-60 133-190 (445)
162 3jro_A Fusion protein of prote 97.6 5.3E-05 1.8E-09 89.9 7.1 59 1-59 71-133 (753)
163 1p22_A F-BOX/WD-repeat protein 97.6 4.9E-05 1.7E-09 82.6 6.1 53 2-56 271-323 (435)
164 3jro_A Fusion protein of prote 97.6 4E-05 1.4E-09 90.9 5.8 59 1-59 25-87 (753)
165 2j04_A TAU60, YPL007P, hypothe 97.6 5.2E-05 1.8E-09 90.1 6.2 57 1-60 101-162 (588)
166 2xyi_A Probable histone-bindin 97.6 6.4E-05 2.2E-09 82.1 6.4 59 1-59 145-214 (430)
167 1xfd_A DIP, dipeptidyl aminope 97.5 0.00016 5.6E-09 83.0 8.9 91 3-93 33-145 (723)
168 2oit_A Nucleoporin 214KDA; NH2 97.5 4.8E-05 1.7E-09 85.0 4.3 58 2-59 113-182 (434)
169 1z68_A Fibroblast activation p 97.5 9.8E-05 3.4E-09 85.3 6.2 92 3-94 32-142 (719)
170 3bws_A Protein LP49; two-domai 97.4 0.00014 4.8E-09 77.6 6.7 61 1-61 185-246 (433)
171 1nir_A Nitrite reductase; hemo 97.4 0.00013 4.6E-09 84.1 7.1 78 2-80 154-242 (543)
172 3bws_A Protein LP49; two-domai 97.4 9.8E-05 3.3E-09 78.8 4.9 59 2-60 139-202 (433)
173 1jmx_B Amine dehydrogenase; ox 97.4 0.00022 7.4E-09 73.0 6.8 59 2-60 60-136 (349)
174 2j04_A TAU60, YPL007P, hypothe 97.4 0.00011 3.6E-09 87.5 5.2 58 1-60 145-213 (588)
175 3u4y_A Uncharacterized protein 97.3 0.00034 1.2E-08 71.8 7.6 59 1-60 14-73 (331)
176 2hqs_A Protein TOLB; TOLB, PAL 97.2 0.00051 1.7E-08 75.6 8.2 78 2-80 195-283 (415)
177 1jmx_B Amine dehydrogenase; ox 97.1 0.00054 1.9E-08 70.1 6.8 56 6-62 274-329 (349)
178 2ecf_A Dipeptidyl peptidase IV 97.1 0.00057 1.9E-08 79.0 7.5 78 2-80 53-168 (741)
179 1pby_B Quinohemoprotein amine 97.1 0.00053 1.8E-08 69.6 6.5 60 1-60 5-67 (337)
180 1pby_B Quinohemoprotein amine 97.1 0.00088 3E-08 67.9 7.5 55 6-61 259-313 (337)
181 3o4h_A Acylamino-acid-releasin 97.0 0.00051 1.7E-08 77.7 5.7 53 7-60 175-229 (582)
182 2hqs_A Protein TOLB; TOLB, PAL 97.0 0.00058 2E-08 75.2 5.4 72 7-79 159-238 (415)
183 1k32_A Tricorn protease; prote 97.0 0.00073 2.5E-08 82.8 6.8 59 2-60 395-463 (1045)
184 2w18_A PALB2, fancn, partner a 96.9 0.001 3.5E-08 74.9 6.9 60 3-62 153-216 (356)
185 2z3z_A Dipeptidyl aminopeptida 96.8 0.0014 4.7E-08 75.5 6.5 53 4-58 98-150 (706)
186 3vgz_A Uncharacterized protein 96.8 0.0019 6.6E-08 66.3 6.9 58 4-61 161-218 (353)
187 2ojh_A Uncharacterized protein 96.8 0.0015 5.2E-08 64.1 5.9 58 3-60 191-260 (297)
188 3vgz_A Uncharacterized protein 96.7 0.0023 7.8E-08 65.8 7.2 92 2-93 106-217 (353)
189 4a5s_A Dipeptidyl peptidase 4 96.7 0.0015 5.1E-08 77.1 6.4 88 6-93 35-143 (740)
190 3o4h_A Acylamino-acid-releasin 96.6 0.002 6.8E-08 72.9 6.7 74 4-80 129-211 (582)
191 3pe7_A Oligogalacturonate lyas 96.6 0.0016 5.4E-08 68.4 5.4 55 6-60 57-113 (388)
192 3u4y_A Uncharacterized protein 96.6 0.0025 8.4E-08 65.5 6.1 58 4-61 59-120 (331)
193 1ri6_A Putative isomerase YBHE 96.5 0.0025 8.5E-08 64.8 5.3 54 4-58 103-160 (343)
194 2oiz_A Aromatic amine dehydrog 96.4 0.0053 1.8E-07 66.6 8.2 51 6-59 285-335 (361)
195 2oiz_A Aromatic amine dehydrog 96.4 0.0044 1.5E-07 67.2 7.0 88 4-93 28-142 (361)
196 1ri6_A Putative isomerase YBHE 96.3 0.0042 1.4E-07 63.2 6.1 55 2-57 248-307 (343)
197 1xfd_A DIP, dipeptidyl aminope 96.2 0.0039 1.3E-07 71.7 5.5 55 4-60 88-145 (723)
198 1nir_A Nitrite reductase; hemo 96.2 0.005 1.7E-07 71.1 6.4 60 2-62 195-261 (543)
199 3hfq_A Uncharacterized protein 96.2 0.0043 1.5E-07 64.6 5.3 53 5-57 61-116 (347)
200 2ecf_A Dipeptidyl peptidase IV 96.1 0.0047 1.6E-07 71.4 5.8 53 7-60 129-183 (741)
201 4a5s_A Dipeptidyl peptidase 4 96.1 0.0047 1.6E-07 72.9 5.9 52 7-60 92-143 (740)
202 3hfq_A Uncharacterized protein 96.0 0.0071 2.4E-07 63.0 6.2 55 2-56 257-315 (347)
203 1jof_A Carboxy-CIS,CIS-muconat 95.9 0.013 4.4E-07 62.6 7.7 56 5-60 117-179 (365)
204 1z68_A Fibroblast activation p 95.9 0.0036 1.2E-07 72.4 3.5 54 5-60 88-141 (719)
205 2z3z_A Dipeptidyl aminopeptida 95.9 0.0064 2.2E-07 70.0 5.4 43 4-46 138-199 (706)
206 3c5m_A Oligogalacturonate lyas 95.7 0.01 3.4E-07 62.0 5.8 56 5-60 58-113 (396)
207 3pe7_A Oligogalacturonate lyas 95.7 0.011 3.6E-07 62.2 6.0 77 3-80 164-254 (388)
208 3scy_A Hypothetical bacterial 95.6 0.012 4E-07 61.9 5.8 76 5-80 231-322 (361)
209 2gop_A Trilobed protease; beta 95.5 0.012 4E-07 61.0 5.4 52 4-60 40-96 (347)
210 2gop_A Trilobed protease; beta 95.3 0.022 7.7E-07 58.9 6.7 37 8-46 86-122 (347)
211 3e5z_A Putative gluconolactona 95.3 0.038 1.3E-06 56.6 8.2 57 2-60 45-101 (296)
212 3no2_A Uncharacterized protein 95.3 0.023 8E-07 59.7 6.7 57 1-60 9-66 (276)
213 2dg1_A DRP35, lactonase; beta 95.2 0.033 1.1E-06 57.6 7.5 59 2-60 61-123 (333)
214 1k32_A Tricorn protease; prote 95.2 0.016 5.4E-07 71.2 5.9 76 4-80 355-437 (1045)
215 3azo_A Aminopeptidase; POP fam 95.1 0.029 1E-06 64.1 7.2 54 7-60 217-276 (662)
216 2bkl_A Prolyl endopeptidase; m 95.0 0.014 4.8E-07 68.3 4.7 59 2-60 142-213 (695)
217 1qks_A Cytochrome CD1 nitrite 95.0 0.03 1E-06 65.8 7.3 58 2-60 172-231 (567)
218 3fvz_A Peptidyl-glycine alpha- 94.9 0.046 1.6E-06 57.7 7.7 56 2-57 263-321 (329)
219 3scy_A Hypothetical bacterial 94.8 0.04 1.4E-06 57.8 6.8 51 6-57 281-336 (361)
220 2xdw_A Prolyl endopeptidase; a 94.6 0.036 1.2E-06 64.9 6.5 52 8-60 152-219 (710)
221 2mad_H Methylamine dehydrogena 94.4 0.075 2.6E-06 58.6 8.2 84 8-94 48-159 (373)
222 1q7f_A NHL, brain tumor CG1071 94.1 0.052 1.8E-06 55.1 5.6 54 3-58 224-280 (286)
223 2hz6_A Endoplasmic reticulum t 93.6 0.041 1.4E-06 60.0 4.2 58 2-61 14-71 (369)
224 3fvz_A Peptidyl-glycine alpha- 93.6 0.21 7E-06 52.8 9.2 53 6-58 68-121 (329)
225 3c75_H MADH, methylamine dehyd 93.6 0.07 2.4E-06 61.0 6.0 88 7-96 99-214 (426)
226 3dsm_A Uncharacterized protein 93.5 0.16 5.5E-06 53.9 8.4 89 5-94 150-256 (328)
227 1pjx_A Dfpase, DIISOPROPYLFLUO 93.5 0.11 3.9E-06 52.7 6.8 54 5-58 245-299 (314)
228 3azo_A Aminopeptidase; POP fam 93.4 0.041 1.4E-06 62.9 3.7 52 7-59 161-228 (662)
229 3sjl_D Methylamine dehydrogena 93.0 0.13 4.4E-06 58.3 7.1 90 6-97 58-175 (386)
230 1xip_A Nucleoporin NUP159; bet 92.7 0.072 2.5E-06 60.3 4.4 53 2-60 141-193 (388)
231 3c5m_A Oligogalacturonate lyas 92.7 0.11 3.7E-06 54.2 5.4 54 7-60 216-275 (396)
232 3dsm_A Uncharacterized protein 92.6 0.13 4.6E-06 54.5 6.0 56 3-60 60-116 (328)
233 3no2_A Uncharacterized protein 92.3 0.19 6.4E-06 52.9 6.6 58 2-61 141-198 (276)
234 1mda_H Methylamine dehydrogena 92.3 0.15 5.2E-06 57.0 6.2 82 8-91 47-158 (368)
235 1jof_A Carboxy-CIS,CIS-muconat 92.1 0.15 5.1E-06 54.4 5.6 53 7-59 282-342 (365)
236 2mad_H Methylamine dehydrogena 92.0 0.27 9.3E-06 54.2 7.8 58 6-64 297-356 (373)
237 2dg1_A DRP35, lactonase; beta 91.9 0.36 1.2E-05 49.9 8.1 56 2-60 22-77 (333)
238 1q7f_A NHL, brain tumor CG1071 91.1 0.33 1.1E-05 49.2 6.7 53 3-56 181-236 (286)
239 1qks_A Cytochrome CD1 nitrite 90.7 0.24 8.1E-06 58.3 5.9 60 3-63 214-280 (567)
240 2qe8_A Uncharacterized protein 90.6 0.4 1.4E-05 51.1 7.1 52 5-56 143-224 (343)
241 2bkl_A Prolyl endopeptidase; m 90.6 0.22 7.5E-06 58.4 5.5 52 8-59 203-262 (695)
242 3p8d_A Medulloblastoma antigen 90.3 0.47 1.6E-05 42.3 6.0 54 964-1033 3-56 (67)
243 2hz6_A Endoplasmic reticulum t 89.1 0.12 4.1E-06 56.4 1.6 57 2-62 97-153 (369)
244 3e5z_A Putative gluconolactona 88.7 0.76 2.6E-05 47.0 7.2 52 6-60 236-288 (296)
245 3hrp_A Uncharacterized protein 88.5 1 3.5E-05 50.1 8.5 55 4-60 149-205 (409)
246 3qii_A PHD finger protein 20; 88.4 0.7 2.4E-05 42.9 5.9 53 965-1033 19-71 (85)
247 3dr2_A Exported gluconolactona 88.1 1.1 3.6E-05 46.7 7.9 53 3-57 63-115 (305)
248 1mda_H Methylamine dehydrogena 87.8 0.45 1.5E-05 53.2 5.2 58 7-65 294-353 (368)
249 3dr2_A Exported gluconolactona 87.7 0.68 2.3E-05 48.2 6.1 51 7-59 169-225 (305)
250 3s6w_A Tudor domain-containing 87.6 1 3.5E-05 37.4 6.0 47 967-1026 1-47 (54)
251 4a4f_A SurviVal of motor neuro 87.4 1.1 3.6E-05 38.8 6.2 55 965-1032 6-60 (64)
252 1rwi_B Serine/threonine-protei 87.4 0.96 3.3E-05 45.0 6.8 54 6-60 86-140 (270)
253 1rwi_B Serine/threonine-protei 86.7 0.71 2.4E-05 45.9 5.4 56 4-59 210-265 (270)
254 2equ_A PHD finger protein 20-l 86.1 1.3 4.5E-05 39.9 6.2 52 965-1032 7-58 (74)
255 2xdw_A Prolyl endopeptidase; a 86.0 0.86 3E-05 53.4 6.5 59 2-60 352-416 (710)
256 3iuj_A Prolyl endopeptidase; h 85.7 0.65 2.2E-05 54.8 5.3 56 3-60 151-219 (693)
257 1mhn_A SurviVal motor neuron p 85.6 0.87 3E-05 38.7 4.6 54 966-1032 2-55 (59)
258 1pjx_A Dfpase, DIISOPROPYLFLUO 85.4 1.4 4.9E-05 44.6 6.9 57 4-60 195-258 (314)
259 1yr2_A Prolyl oligopeptidase; 85.3 0.77 2.6E-05 54.3 5.6 52 7-60 189-254 (741)
260 3sjl_D Methylamine dehydrogena 84.6 0.96 3.3E-05 51.3 5.8 54 7-61 311-366 (386)
261 3c75_H MADH, methylamine dehyd 84.1 1.3 4.3E-05 50.8 6.5 55 6-61 349-405 (426)
262 3g4e_A Regucalcin; six bladed 84.1 1.2 4.2E-05 46.2 5.9 41 6-46 219-260 (297)
263 2qe8_A Uncharacterized protein 84.0 1.9 6.6E-05 45.9 7.5 55 6-60 92-156 (343)
264 1xip_A Nucleoporin NUP159; bet 83.2 1.3 4.3E-05 50.2 6.0 56 3-60 102-157 (388)
265 1g5v_A SurviVal motor neuron p 83.1 1.2 4E-05 41.4 4.6 56 965-1033 8-63 (88)
266 2ghs_A AGR_C_1268P; regucalcin 81.2 1.9 6.6E-05 45.7 6.1 54 3-60 67-120 (326)
267 2z2n_A Virginiamycin B lyase; 80.4 2.7 9.2E-05 41.9 6.5 54 5-60 160-214 (299)
268 2iwa_A Glutamine cyclotransfer 80.3 1.8 6.2E-05 46.7 5.7 56 4-62 83-139 (266)
269 2ldm_A Uncharacterized protein 80.5 0.39 1.3E-05 44.2 0.0 54 964-1033 3-56 (81)
270 3g4e_A Regucalcin; six bladed 78.4 3.3 0.00011 43.0 6.7 53 4-60 32-84 (297)
271 2z2n_A Virginiamycin B lyase; 77.7 3.7 0.00013 40.9 6.6 51 5-56 202-253 (299)
272 3pnw_C Tudor domain-containing 77.3 2.3 7.9E-05 38.2 4.5 54 966-1032 16-69 (77)
273 3nok_A Glutaminyl cyclase; bet 76.1 3.5 0.00012 45.0 6.3 56 4-62 113-168 (268)
274 1yiq_A Quinohemoprotein alcoho 75.5 2.6 8.9E-05 50.4 5.6 57 5-62 453-509 (689)
275 3hxj_A Pyrrolo-quinoline quino 74.9 5.3 0.00018 40.7 7.0 55 3-60 113-167 (330)
276 1yr2_A Prolyl oligopeptidase; 74.9 2.6 8.9E-05 49.9 5.3 59 2-60 379-443 (741)
277 3nol_A Glutamine cyclotransfer 74.8 3.5 0.00012 44.8 5.8 56 4-62 104-159 (262)
278 3hxj_A Pyrrolo-quinoline quino 74.7 4.9 0.00017 41.0 6.6 53 3-60 153-205 (330)
279 3mbr_X Glutamine cyclotransfer 74.4 4.5 0.00016 43.4 6.6 55 4-61 82-136 (243)
280 2ghs_A AGR_C_1268P; regucalcin 74.1 4.1 0.00014 43.2 6.1 40 6-46 250-290 (326)
281 2fp8_A Strictosidine synthase; 73.4 5.3 0.00018 41.8 6.7 52 6-58 164-216 (322)
282 1kb0_A Quinohemoprotein alcoho 73.3 3.5 0.00012 49.2 5.9 56 6-62 456-511 (677)
283 2qc5_A Streptogramin B lactona 72.9 7.7 0.00026 38.6 7.4 50 6-56 208-258 (300)
284 3hrp_A Uncharacterized protein 71.1 6.4 0.00022 43.7 7.0 53 8-60 195-251 (409)
285 3iuj_A Prolyl endopeptidase; h 70.7 6.3 0.00021 46.5 7.2 54 6-59 207-269 (693)
286 2qc5_A Streptogramin B lactona 70.6 7.8 0.00027 38.6 6.9 52 5-57 39-91 (300)
287 2xe4_A Oligopeptidase B; hydro 68.3 3.1 0.00011 50.0 4.0 52 7-60 201-258 (751)
288 2d9t_A Tudor domain-containing 68.1 5.9 0.0002 35.6 4.8 55 966-1033 8-62 (78)
289 4hcz_A PHD finger protein 1; p 66.6 12 0.0004 32.8 6.0 54 967-1035 3-56 (58)
290 3nol_A Glutamine cyclotransfer 64.2 8.4 0.00029 41.9 6.0 65 2-67 58-125 (262)
291 1kb0_A Quinohemoprotein alcoho 63.7 5.4 0.00019 47.5 4.8 43 3-45 494-537 (677)
292 2ece_A 462AA long hypothetical 63.5 8.4 0.00029 45.1 6.2 56 5-60 162-239 (462)
293 2ece_A 462AA long hypothetical 61.7 16 0.00055 42.8 8.1 53 4-56 225-287 (462)
294 3qqz_A Putative uncharacterize 61.1 17 0.00058 38.9 7.6 79 5-84 47-132 (255)
295 3h8z_A FragIle X mental retard 60.4 12 0.00041 37.0 5.8 42 966-1017 59-100 (128)
296 2iwa_A Glutamine cyclotransfer 59.1 11 0.00038 40.6 5.8 91 6-97 43-141 (266)
297 1kv9_A Type II quinohemoprotei 58.7 10 0.00034 45.2 5.9 58 4-62 435-492 (668)
298 3nok_A Glutaminyl cyclase; bet 58.3 5.1 0.00018 43.7 3.0 63 2-66 70-133 (268)
299 3q7m_A Lipoprotein YFGL, BAMB; 54.6 20 0.00069 37.9 6.8 60 3-62 59-126 (376)
300 3fdr_A Tudor and KH domain-con 53.1 13 0.00045 33.7 4.4 55 966-1034 26-80 (94)
301 2eqj_A Metal-response element- 52.2 31 0.001 30.9 6.3 51 967-1032 13-63 (66)
302 1cru_A Protein (soluble quinop 52.2 22 0.00075 40.6 7.1 48 5-52 367-430 (454)
303 2eqk_A Tudor domain-containing 52.2 15 0.00052 34.1 4.6 29 966-998 20-48 (85)
304 3q7m_A Lipoprotein YFGL, BAMB; 50.8 24 0.00082 37.3 6.6 54 5-60 285-339 (376)
305 2ad6_A Methanol dehydrogenase 48.8 18 0.00062 42.2 5.8 58 5-63 442-499 (571)
306 1yiq_A Quinohemoprotein alcoho 47.5 22 0.00074 42.5 6.3 53 8-62 276-342 (689)
307 1fwx_A Nitrous oxide reductase 46.5 18 0.00061 43.6 5.4 52 7-59 254-309 (595)
308 3mbr_X Glutamine cyclotransfer 45.7 33 0.0011 36.8 6.7 64 2-66 36-102 (243)
309 2xe4_A Oligopeptidase B; hydro 44.9 37 0.0013 40.8 7.8 52 8-59 248-305 (751)
310 2diq_A Tudor and KH domain-con 40.1 32 0.0011 32.1 5.0 54 966-1033 31-84 (110)
311 1flg_A Protein (quinoprotein e 38.9 32 0.0011 40.4 5.8 58 5-63 464-521 (582)
312 2p4o_A Hypothetical protein; p 38.4 63 0.0022 33.6 7.5 33 28-60 72-106 (306)
313 2m0o_A PHD finger protein 1; t 37.7 42 0.0014 30.8 5.0 53 966-1033 25-77 (79)
314 2a7y_A Hypothetical protein RV 36.9 60 0.0021 30.2 6.0 42 968-1018 6-48 (83)
315 1flg_A Protein (quinoprotein e 36.1 47 0.0016 39.0 6.7 56 6-62 290-359 (582)
316 1npe_A Nidogen, entactin; glyc 35.8 57 0.002 32.9 6.4 52 6-57 57-109 (267)
317 3ntk_A Maternal protein tudor; 35.5 34 0.0012 34.2 4.6 39 967-1018 47-85 (169)
318 2xk0_A Polycomb protein PCL; t 34.9 74 0.0025 28.7 6.0 38 966-1018 14-51 (69)
319 1kv9_A Type II quinohemoprotei 34.9 41 0.0014 40.0 6.0 53 8-62 271-337 (668)
320 4fu6_A PC4 and SFRS1-interacti 34.3 22 0.00076 35.3 3.0 65 960-1033 15-79 (153)
321 2xzh_A Clathrin heavy chain 1; 33.3 56 0.0019 37.3 6.4 53 7-59 281-333 (365)
322 2wac_A CG7008-PA; unknown func 32.9 59 0.002 32.8 6.0 53 967-1034 51-103 (218)
323 3qqz_A Putative uncharacterize 32.5 34 0.0012 36.6 4.3 55 27-84 26-81 (255)
324 2e5p_A Protein PHF1, PHD finge 30.3 1.3E+02 0.0043 27.1 6.7 57 966-1037 8-64 (68)
325 2l8d_A Lamin-B receptor; DNA b 30.1 1.2E+02 0.0042 27.1 6.5 42 965-1018 7-48 (66)
326 1w6s_A Methanol dehydrogenase 29.8 70 0.0024 38.0 6.7 56 6-62 277-346 (599)
327 1fwx_A Nitrous oxide reductase 29.6 15 0.0005 44.3 1.0 47 3-49 348-409 (595)
328 1bpo_A Protein (clathrin); cla 29.3 86 0.003 37.1 7.2 53 7-59 280-332 (494)
329 1w6s_A Methanol dehydrogenase 28.9 55 0.0019 38.9 5.6 58 5-63 451-508 (599)
330 2ad6_A Methanol dehydrogenase 28.2 74 0.0025 37.2 6.5 54 7-62 272-339 (571)
331 2p9w_A MAL S 1 allergenic prot 27.2 1E+02 0.0036 34.6 7.2 28 30-57 187-214 (334)
332 3q6k_A 43.2 kDa salivary prote 26.8 83 0.0028 35.8 6.4 66 7-74 123-204 (381)
333 4hw6_A Hypothetical protein, I 26.3 1.1E+02 0.0037 34.5 7.2 53 5-57 248-303 (433)
334 3tc9_A Hypothetical hydrolase; 26.3 1.2E+02 0.0042 33.9 7.6 52 6-57 247-300 (430)
335 4a2l_A BT_4663, two-component 26.2 1.4E+02 0.0048 35.6 8.5 55 3-59 423-481 (795)
336 2ism_A Putative oxidoreductase 26.1 65 0.0022 35.0 5.2 38 19-57 22-59 (352)
337 3a9g_A Putative uncharacterize 24.7 1.3E+02 0.0043 32.9 7.2 45 5-49 275-334 (354)
338 3ask_A E3 ubiquitin-protein li 24.5 80 0.0027 33.9 5.3 63 968-1034 3-67 (226)
339 2g8s_A Glucose/sorbosone dehyd 24.1 68 0.0023 34.9 4.9 41 16-56 6-46 (353)
340 4gq2_M Nucleoporin NUP120; bet 23.7 88 0.003 39.2 6.3 22 3-24 253-274 (950)
341 1npe_A Nidogen, entactin; glyc 23.7 1.3E+02 0.0044 30.3 6.5 51 6-57 100-154 (267)
342 3pbp_A Nucleoporin NUP82; beta 22.9 1E+02 0.0036 36.1 6.3 49 5-54 147-208 (452)
343 2p9w_A MAL S 1 allergenic prot 22.9 1.2E+02 0.0042 34.1 6.6 60 2-61 30-115 (334)
344 3v9f_A Two-component system se 21.0 1.7E+02 0.0058 34.8 7.7 52 7-59 469-525 (781)
345 3das_A Putative oxidoreductase 20.3 1.3E+02 0.0045 33.6 6.3 41 19-59 23-63 (347)
No 1
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.78 E-value=4.3e-19 Score=167.99 Aligned_cols=103 Identities=14% Similarity=0.225 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhc
Q 001090 1045 DNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESY 1124 (1159)
Q Consensus 1045 E~r~kLlsal~klees~~r~~DryGI~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tF 1124 (1159)
+.+..+...+..+.. .....-+..+++..++|+||++|++||||+||++||++++|+++++|.+||+|||+||.+|
T Consensus 7 ~l~~~~~~il~~l~~----~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 82 (112)
T 3d7c_A 7 QLYTTLKNLLAQIKS----HPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREY 82 (112)
T ss_dssp HHHHHHHHHHHHHHH----SGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc----CCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 445555555555532 1122235667777789999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCC
Q 001090 1125 FGRNTDLSTKIKRLSDLVTRTLSSLKA 1151 (1159)
Q Consensus 1125 N~p~S~I~k~Ak~L~d~F~~~LkkL~~ 1151 (1159)
|+++|.++++|+.|+++|++.|+++..
T Consensus 83 N~~~s~~~~~A~~L~~~f~~~~~~~~~ 109 (112)
T 3d7c_A 83 NPPDSEYCRCASALEKFFYFKLKEGGL 109 (112)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999998764
No 2
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=5.9e-19 Score=169.88 Aligned_cols=111 Identities=13% Similarity=0.170 Sum_probs=90.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhccc--hhhhhhhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 001090 1042 IDDDNRNKLLSAFAKLEQSANRV--QDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLS 1119 (1159)
Q Consensus 1042 id~E~r~kLlsal~klees~~r~--~DryGI~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~s 1119 (1159)
.++.....+...+..+....+.. .-..-+.+++...++|+||++|++||||+||++||++++|+++++|+.||+|||+
T Consensus 10 ~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 89 (123)
T 2dat_A 10 NPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCH 89 (123)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 34566666666666654321100 0011245667777899999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001090 1120 NAESYFGRNTDLSTKIKRLSDLVTRTLSSLKAP 1152 (1159)
Q Consensus 1120 NA~tFN~p~S~I~k~Ak~L~d~F~~~LkkL~~~ 1152 (1159)
||.+||+++|.|+++|..|+++|++.+++++..
T Consensus 90 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ps~ 122 (123)
T 2dat_A 90 NAQTFNLEGSQIYEDSIVLQSVFKSARQSGPSS 122 (123)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999998753
No 3
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.77 E-value=2.5e-19 Score=171.67 Aligned_cols=82 Identities=20% Similarity=0.364 Sum_probs=77.9
Q ss_pred hhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHhcC
Q 001090 1070 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1149 (1159)
Q Consensus 1070 I~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN~p~S~I~k~Ak~L~d~F~~~LkkL 1149 (1159)
+.+++....+|+||++|++||||+||++||++++|+++++|+.||+|||+||.+||+++|.|+++|..|+++|.+.+++|
T Consensus 35 F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i 114 (120)
T 3ljw_A 35 FQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEI 114 (120)
T ss_dssp GSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 46777788899999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 001090 1150 KA 1151 (1159)
Q Consensus 1150 ~~ 1151 (1159)
+.
T Consensus 115 ~~ 116 (120)
T 3ljw_A 115 EH 116 (120)
T ss_dssp HH
T ss_pred hh
Confidence 63
No 4
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.76 E-value=8.4e-19 Score=166.78 Aligned_cols=99 Identities=14% Similarity=0.293 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHhhccchhhhhhhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhcc
Q 001090 1046 NRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1125 (1159)
Q Consensus 1046 ~r~kLlsal~klees~~r~~DryGI~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN 1125 (1159)
....++..+..+.. ..+..-+..+++...+|+|+.+|++||||+||++||++++|+++++|+.||+|||.||.+||
T Consensus 17 ~~~~~~~il~~l~~----~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 92 (116)
T 3nxb_A 17 DFTAMYKVLDVVKA----HKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYN 92 (116)
T ss_dssp HHHHHHHHHHHHHH----STTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----CCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 44556666655532 12223356777777899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhc
Q 001090 1126 GRNTDLSTKIKRLSDLVTRTLSS 1148 (1159)
Q Consensus 1126 ~p~S~I~k~Ak~L~d~F~~~Lkk 1148 (1159)
+++|.|+.+|..|+++|++.|.+
T Consensus 93 ~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 93 GESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999875
No 5
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.76 E-value=1.7e-18 Score=166.68 Aligned_cols=107 Identities=16% Similarity=0.259 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHhhcc--chhhhhhhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 001090 1045 DNRNKLLSAFAKLEQSANR--VQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAE 1122 (1159)
Q Consensus 1045 E~r~kLlsal~klees~~r--~~DryGI~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~ 1122 (1159)
..+.++...+..+...... ..-..-+..++....+|+||.+|++||||+||++||+++.|.++++|..||+|||.||.
T Consensus 15 ~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 94 (124)
T 3mb4_A 15 PMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNAC 94 (124)
T ss_dssp HHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 4555555555555431110 01112245667778899999999999999999999999999999999999999999999
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHHhcCCC
Q 001090 1123 SYFGRNTDLSTKIKRLSDLVTRTLSSLKA 1151 (1159)
Q Consensus 1123 tFN~p~S~I~k~Ak~L~d~F~~~LkkL~~ 1151 (1159)
+||+++|.|+++|..|+++|++.++.|..
T Consensus 95 ~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 123 (124)
T 3mb4_A 95 TYNEPESLIYKDALVLHKVLLETRRDLEG 123 (124)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998875
No 6
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.76 E-value=2.2e-18 Score=172.27 Aligned_cols=85 Identities=19% Similarity=0.342 Sum_probs=79.0
Q ss_pred hhhhcccc--ccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHh
Q 001090 1070 VQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLS 1147 (1159)
Q Consensus 1070 I~~L~~~~--e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN~p~S~I~k~Ak~L~d~F~~~Lk 1147 (1159)
+.++++.. ++|+||++|++||||+||++||++++|+++++|+.||+|||.||.+||++++.|+.+|+.|+++|++.|+
T Consensus 53 F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~~ 132 (154)
T 4alg_A 53 FRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVA 132 (154)
T ss_dssp GSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHT
T ss_pred hcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45566654 6999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 001090 1148 SLKAPQF 1154 (1159)
Q Consensus 1148 kL~~~q~ 1154 (1159)
+|+.+..
T Consensus 133 ~l~~~~~ 139 (154)
T 4alg_A 133 SMPQEEQ 139 (154)
T ss_dssp TSCSSCC
T ss_pred HCCchhc
Confidence 9986654
No 7
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.76 E-value=2.1e-18 Score=167.23 Aligned_cols=83 Identities=22% Similarity=0.369 Sum_probs=77.0
Q ss_pred hhhhccc--cccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHh
Q 001090 1070 VQKLKQV--SQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLS 1147 (1159)
Q Consensus 1070 I~~L~~~--~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN~p~S~I~k~Ak~L~d~F~~~Lk 1147 (1159)
+..+++. ..+|+||++|++||||+||++||++++|+++++|+.||+|||+||.+||+++|.|+.+|+.|+++|++.|+
T Consensus 42 F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~ 121 (127)
T 2oss_A 42 FQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKIN 121 (127)
T ss_dssp GSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred hcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3445543 37999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 001090 1148 SLKAP 1152 (1159)
Q Consensus 1148 kL~~~ 1152 (1159)
+|+.+
T Consensus 122 ~lp~~ 126 (127)
T 2oss_A 122 ELPTE 126 (127)
T ss_dssp TCCCC
T ss_pred HCCCC
Confidence 99865
No 8
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.75 E-value=2.2e-18 Score=167.30 Aligned_cols=109 Identities=14% Similarity=0.189 Sum_probs=89.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhc---cchhhhhhhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001090 1042 IDDDNRNKLLSAFAKLEQSAN---RVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVML 1118 (1159)
Q Consensus 1042 id~E~r~kLlsal~klees~~---r~~DryGI~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~ 1118 (1159)
-+++....+...+..+..... ......-+..++....+|+||++|++||||+||++||++++|+++++|..||+|||
T Consensus 8 ~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~ 87 (129)
T 2grc_A 8 NPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLC 87 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 345666666666666543210 11111224566777789999999999999999999999999999999999999999
Q ss_pred HhhhhccCCCCHHHHHHHHHHHHHHHHHhcCC
Q 001090 1119 SNAESYFGRNTDLSTKIKRLSDLVTRTLSSLK 1150 (1159)
Q Consensus 1119 sNA~tFN~p~S~I~k~Ak~L~d~F~~~LkkL~ 1150 (1159)
+||.+||+++|.|+++|..|+++|.+.+++|.
T Consensus 88 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 119 (129)
T 2grc_A 88 QNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIE 119 (129)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999998876
No 9
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.75 E-value=1.5e-18 Score=165.24 Aligned_cols=82 Identities=20% Similarity=0.323 Sum_probs=77.4
Q ss_pred hhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHhcC
Q 001090 1070 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1149 (1159)
Q Consensus 1070 I~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN~p~S~I~k~Ak~L~d~F~~~LkkL 1149 (1159)
+.+++....+|+||++|++||||+||++||+++.|+++++|+.||+|||+||.+||+++|.++++|..|+++|++.+++|
T Consensus 32 F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~l 111 (116)
T 3iu5_A 32 FIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKLWDLYLRTRNEF 111 (116)
T ss_dssp GSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45667778899999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CC
Q 001090 1150 KA 1151 (1159)
Q Consensus 1150 ~~ 1151 (1159)
..
T Consensus 112 ~~ 113 (116)
T 3iu5_A 112 VQ 113 (116)
T ss_dssp HC
T ss_pred Hh
Confidence 54
No 10
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.75 E-value=1.7e-18 Score=168.67 Aligned_cols=82 Identities=21% Similarity=0.417 Sum_probs=77.6
Q ss_pred hhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHhcC
Q 001090 1070 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1149 (1159)
Q Consensus 1070 I~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN~p~S~I~k~Ak~L~d~F~~~LkkL 1149 (1159)
+.+++....+|+||++|+.||||+||++||++++|+++++|+.||+|||.||.+||+++|.|+++|..|+++|++.++.|
T Consensus 44 F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 123 (130)
T 3k2j_A 44 FYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQAKKKEL 123 (130)
T ss_dssp GSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46667778899999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC
Q 001090 1150 KA 1151 (1159)
Q Consensus 1150 ~~ 1151 (1159)
..
T Consensus 124 ~~ 125 (130)
T 3k2j_A 124 AR 125 (130)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 11
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.75 E-value=2.1e-18 Score=164.29 Aligned_cols=81 Identities=12% Similarity=0.285 Sum_probs=76.7
Q ss_pred hhhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHhc
Q 001090 1069 GVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1148 (1159)
Q Consensus 1069 GI~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN~p~S~I~k~Ak~L~d~F~~~Lkk 1148 (1159)
-+..+++...+|+||++|++||||+||++||+++.|+++++|+.||+|||.||.+||+++|.|+.+|..|+++|++.|++
T Consensus 33 ~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~ 112 (117)
T 3g0l_A 33 PFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWTD 112 (117)
T ss_dssp GGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 35667777789999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 001090 1149 L 1149 (1159)
Q Consensus 1149 L 1149 (1159)
+
T Consensus 113 ~ 113 (117)
T 3g0l_A 113 T 113 (117)
T ss_dssp H
T ss_pred H
Confidence 5
No 12
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.75 E-value=2.6e-18 Score=164.09 Aligned_cols=103 Identities=14% Similarity=0.270 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhhhhhhhcccc--ccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhh
Q 001090 1044 DDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNA 1121 (1159)
Q Consensus 1044 ~E~r~kLlsal~klees~~r~~DryGI~~L~~~~--e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA 1121 (1159)
++.+..|+..+.++.... ....-+.++++.. ++|+||.+|++||||+||++||+++.|.++++|..||+|||+||
T Consensus 10 ~el~~~l~~~l~~l~~~~---~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 86 (119)
T 3p1f_A 10 EELRQALMPTLEALYRQD---PESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNA 86 (119)
T ss_dssp HHHHHHHHHHHHHHHTCT---TTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC---CCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 567788888887765311 1112245555544 79999999999999999999999999999999999999999999
Q ss_pred hhccCCCCHHHHHHHHHHHHHHHHHhcC
Q 001090 1122 ESYFGRNTDLSTKIKRLSDLVTRTLSSL 1149 (1159)
Q Consensus 1122 ~tFN~p~S~I~k~Ak~L~d~F~~~LkkL 1149 (1159)
.+||+++|.++++|+.|+++|++.|+.+
T Consensus 87 ~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 114 (119)
T 3p1f_A 87 WLYNRKTSRVYKFCSKLAEVFEQEIDPV 114 (119)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
No 13
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=171.61 Aligned_cols=81 Identities=19% Similarity=0.322 Sum_probs=76.9
Q ss_pred hhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHhcC
Q 001090 1070 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1149 (1159)
Q Consensus 1070 I~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN~p~S~I~k~Ak~L~d~F~~~LkkL 1149 (1159)
+..++....+|+||.+|++||||+||++||++++|+++++|++||+|||.||.+||+++|.|+++|+.|+++|++.++.|
T Consensus 52 F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 131 (150)
T 3tlp_A 52 FMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKEKRKEL 131 (150)
T ss_dssp GSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 34666777899999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 001090 1150 K 1150 (1159)
Q Consensus 1150 ~ 1150 (1159)
.
T Consensus 132 ~ 132 (150)
T 3tlp_A 132 G 132 (150)
T ss_dssp C
T ss_pred c
Confidence 6
No 14
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=166.45 Aligned_cols=80 Identities=23% Similarity=0.446 Sum_probs=75.8
Q ss_pred hhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHhcC
Q 001090 1070 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1149 (1159)
Q Consensus 1070 I~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN~p~S~I~k~Ak~L~d~F~~~LkkL 1149 (1159)
+.+++....+|+||++|++||||+||++||+++.|+++++|..||+|||.||.+||+++|.++++|..|+++|.+.++.+
T Consensus 36 F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 115 (126)
T 3mqm_A 36 LLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRLRKAYYNARHEA 115 (126)
T ss_dssp GSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45677778999999999999999999999999999999999999999999999999999999999999999999988764
No 15
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.75 E-value=2.5e-18 Score=165.25 Aligned_cols=83 Identities=18% Similarity=0.323 Sum_probs=78.2
Q ss_pred hhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHhcC
Q 001090 1070 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1149 (1159)
Q Consensus 1070 I~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN~p~S~I~k~Ak~L~d~F~~~LkkL 1149 (1159)
+..+++...+|+||++|++||||+||++||+++.|.++++|..||+|||+||.+||+++|.|+++|..|+++|.+.|+.|
T Consensus 34 F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 113 (121)
T 1e6i_A 34 FLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEI 113 (121)
T ss_dssp GSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred hCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 45666777899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 001090 1150 KAP 1152 (1159)
Q Consensus 1150 ~~~ 1152 (1159)
+..
T Consensus 114 p~~ 116 (121)
T 1e6i_A 114 PEY 116 (121)
T ss_dssp GGG
T ss_pred ccc
Confidence 643
No 16
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.74 E-value=2.6e-18 Score=164.74 Aligned_cols=86 Identities=19% Similarity=0.246 Sum_probs=78.9
Q ss_pred hhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHhcC
Q 001090 1070 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1149 (1159)
Q Consensus 1070 I~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN~p~S~I~k~Ak~L~d~F~~~LkkL 1149 (1159)
+..+++...+|+||++|+.||||+||++||+++.|+++++|..||+|||.||.+||+++|.|+++|+.|++.|.+.++..
T Consensus 29 F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 108 (117)
T 2i7k_A 29 FSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQE 108 (117)
T ss_dssp SSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34556667899999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCC
Q 001090 1150 KAPQFH 1155 (1159)
Q Consensus 1150 ~~~q~~ 1155 (1159)
..+.-|
T Consensus 109 ~~~~~~ 114 (117)
T 2i7k_A 109 RLEHHH 114 (117)
T ss_dssp TCSSSC
T ss_pred HHHhcc
Confidence 666544
No 17
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.74 E-value=4.1e-18 Score=162.91 Aligned_cols=83 Identities=19% Similarity=0.365 Sum_probs=77.0
Q ss_pred hhhhccccc--cCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHh
Q 001090 1070 VQKLKQVSQ--KTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLS 1147 (1159)
Q Consensus 1070 I~~L~~~~e--~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN~p~S~I~k~Ak~L~d~F~~~Lk 1147 (1159)
+..+++... +|+||.+|++||||+||++||+++.|+++++|+.||+|||.||.+||+++|.|+.+|+.|+++|++.|+
T Consensus 33 F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~ 112 (120)
T 3jvl_A 33 FYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFA 112 (120)
T ss_dssp GSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHT
T ss_pred hcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 445555555 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 001090 1148 SLKAP 1152 (1159)
Q Consensus 1148 kL~~~ 1152 (1159)
+++.+
T Consensus 113 ~~p~~ 117 (120)
T 3jvl_A 113 KMPDE 117 (120)
T ss_dssp TCCC-
T ss_pred HCcCC
Confidence 99864
No 18
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.74 E-value=3.6e-18 Score=171.65 Aligned_cols=107 Identities=14% Similarity=0.293 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccchhhhhhhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 001090 1041 RIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSN 1120 (1159)
Q Consensus 1041 ~id~E~r~kLlsal~klees~~r~~DryGI~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sN 1120 (1159)
.++++.++.|...|..|... ....-+.++++...+|+|+++|++||||+||++||+++.|.++++|+.||+|||+|
T Consensus 68 ~l~~~~~~~l~~il~~l~~~----~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 143 (174)
T 2ri7_A 68 PLTEKDYEGLKRVLRSLQAH----KMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDN 143 (174)
T ss_dssp BCCHHHHHHHHHHHHHHHTS----GGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhh----hhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 46677778888777776531 11122456666678999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCHHHHHHHHHHHHHHHHHhcCCC
Q 001090 1121 AESYFGRNTDLSTKIKRLSDLVTRTLSSLKA 1151 (1159)
Q Consensus 1121 A~tFN~p~S~I~k~Ak~L~d~F~~~LkkL~~ 1151 (1159)
|.+||+++|.|+++|+.|+++|++.|+.|++
T Consensus 144 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 174 (174)
T 2ri7_A 144 CRYYNPSDSPFYQCAEVLESFFVQKLKGFKA 174 (174)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999998874
No 19
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.74 E-value=3.3e-18 Score=166.42 Aligned_cols=82 Identities=20% Similarity=0.361 Sum_probs=75.7
Q ss_pred hhhcccc--ccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHhc
Q 001090 1071 QKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1148 (1159)
Q Consensus 1071 ~~L~~~~--e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN~p~S~I~k~Ak~L~d~F~~~Lkk 1148 (1159)
..+++.. ++|+||++|++||||+||++||+++.|+++++|..||+|||+||.+||+++|.|+.+|+.|+++|++.|++
T Consensus 47 ~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~ 126 (130)
T 2ouo_A 47 YKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAK 126 (130)
T ss_dssp SSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4444433 59999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 001090 1149 LKAP 1152 (1159)
Q Consensus 1149 L~~~ 1152 (1159)
|+.+
T Consensus 127 lp~e 130 (130)
T 2ouo_A 127 MPDE 130 (130)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 9864
No 20
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.73 E-value=7.4e-18 Score=162.12 Aligned_cols=102 Identities=15% Similarity=0.273 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhc
Q 001090 1045 DNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESY 1124 (1159)
Q Consensus 1045 E~r~kLlsal~klees~~r~~DryGI~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tF 1124 (1159)
+.+.++...+..+.. ..+...+..+++...+|+||.+|++||||+||++||+++.|.++++|+.||+|||.||.+|
T Consensus 10 ~~~~~c~~il~~l~~----~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 85 (123)
T 3q2e_A 10 NWKKQCKELVNLIFQ----CEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAY 85 (123)
T ss_dssp CHHHHHHHHHHHHHT----SGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh----CCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 445555555555532 1222335677777789999999999999999999999999999999999999999999999
Q ss_pred cCC-CCHHHHHHHHHHHHHHHHHhcCC
Q 001090 1125 FGR-NTDLSTKIKRLSDLVTRTLSSLK 1150 (1159)
Q Consensus 1125 N~p-~S~I~k~Ak~L~d~F~~~LkkL~ 1150 (1159)
|++ +|.|+.+|..|+++|++.++++.
T Consensus 86 N~~~~s~i~~~A~~L~~~f~~~~~~~~ 112 (123)
T 3q2e_A 86 TPNKRSKIYSMTLRLSALFEEKMKKIS 112 (123)
T ss_dssp SCCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 996 99999999999999999998765
No 21
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.72 E-value=1.4e-17 Score=168.28 Aligned_cols=106 Identities=13% Similarity=0.172 Sum_probs=86.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccchhhhhhhhhccc--cccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001090 1041 RIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQV--SQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVML 1118 (1159)
Q Consensus 1041 ~id~E~r~kLlsal~klees~~r~~DryGI~~L~~~--~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~ 1118 (1159)
++....+..+...+..|.. .....-+..+++. ..+|+||.+|++||||+||++||++++|+++++|+.||+|||
T Consensus 17 p~~~~~~~~~~~il~~L~~----~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif 92 (166)
T 3fkm_X 17 QGNKQWYLLANQLILSLSK----YEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIF 92 (166)
T ss_dssp CTTHHHHHHHHHHHHHHTT----STTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHh----CCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 3555666666666666542 1122224555553 369999999999999999999999999999999999999999
Q ss_pred HhhhhccCCCCHHHHHHHHHHHHHHHHHhcCC
Q 001090 1119 SNAESYFGRNTDLSTKIKRLSDLVTRTLSSLK 1150 (1159)
Q Consensus 1119 sNA~tFN~p~S~I~k~Ak~L~d~F~~~LkkL~ 1150 (1159)
.||.+||+++|.|+.+|+.|+++|.+.|+.+.
T Consensus 93 ~Na~~yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 93 DNCSLYNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HHHHHSSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999998876
No 22
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=163.06 Aligned_cols=107 Identities=14% Similarity=0.229 Sum_probs=87.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccchhhhhhhhhccccccCcccccCCCCCCHHHHHHHHHc--CCCCCHHHHHHHHHHHH
Q 001090 1041 RIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLEN--NYYRGLEAVKHDIAVML 1118 (1159)
Q Consensus 1041 ~id~E~r~kLlsal~klees~~r~~DryGI~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN--~~YRsleaf~~DVrLI~ 1118 (1159)
.+.+.++.++...+..|... ....-+...+.. .+|+||++|++||||+||++||++ +.|.++++|+.||+|||
T Consensus 16 ~m~p~~~~~c~~il~~L~~~----~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif 90 (135)
T 2yyn_A 16 KLTPIDKRKCERLLLFLYCH----EMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIF 90 (135)
T ss_dssp CCCHHHHHHHHHHHHHHHTS----GGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhC----ccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 35666666776666666431 111113344444 699999999999999999999998 48999999999999999
Q ss_pred HhhhhccCCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001090 1119 SNAESYFGRNTDLSTKIKRLSDLVTRTLSSLKAP 1152 (1159)
Q Consensus 1119 sNA~tFN~p~S~I~k~Ak~L~d~F~~~LkkL~~~ 1152 (1159)
+||.+||+++|.|+++|+.|+++|++.|+++..+
T Consensus 91 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 124 (135)
T 2yyn_A 91 QNCAEFNEPDSEVANAGIKLENYFEELLKNLYPE 124 (135)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999987543
No 23
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=6.2e-18 Score=162.71 Aligned_cols=81 Identities=16% Similarity=0.286 Sum_probs=75.4
Q ss_pred hhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHhcC
Q 001090 1070 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1149 (1159)
Q Consensus 1070 I~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN~p~S~I~k~Ak~L~d~F~~~LkkL 1149 (1159)
+..+++...+|+||++|++||||+||++||+++.|+++++|..||+|||+||.+||+++|.++++|..|++.|...|+.+
T Consensus 28 F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~~l~~~ 107 (121)
T 2d9e_A 28 FSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQA 107 (121)
T ss_dssp SSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45666677899999999999999999999999999999999999999999999999999999999999999999888764
Q ss_pred C
Q 001090 1150 K 1150 (1159)
Q Consensus 1150 ~ 1150 (1159)
.
T Consensus 108 ~ 108 (121)
T 2d9e_A 108 R 108 (121)
T ss_dssp H
T ss_pred H
Confidence 3
No 24
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=162.81 Aligned_cols=102 Identities=15% Similarity=0.258 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhc
Q 001090 1045 DNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESY 1124 (1159)
Q Consensus 1045 E~r~kLlsal~klees~~r~~DryGI~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tF 1124 (1159)
+.+..+...+..+... .+..-+..+++...+|+||++|++||||+||++||+++.|.++++|+.||+|||.||.+|
T Consensus 21 ~l~~~~~~il~~l~~~----~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 96 (135)
T 3mb3_A 21 AWKKQCEELLNLIFQC----EDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAY 96 (135)
T ss_dssp THHHHHHHHHHHHHHS----GGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC----CCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3455555555554331 122335677777889999999999999999999999999999999999999999999999
Q ss_pred cCC-CCHHHHHHHHHHHHHHHHHhcCC
Q 001090 1125 FGR-NTDLSTKIKRLSDLVTRTLSSLK 1150 (1159)
Q Consensus 1125 N~p-~S~I~k~Ak~L~d~F~~~LkkL~ 1150 (1159)
|++ +|.|+.+|..|+++|+..|+.+.
T Consensus 97 N~~~~s~i~~~A~~L~~~f~~~~~~~~ 123 (135)
T 3mb3_A 97 TPSKRSRIYSMSLRLSAFFEEHISSVL 123 (135)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 998 89999999999999999988753
No 25
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=162.42 Aligned_cols=100 Identities=18% Similarity=0.267 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHhhccchhhhhhhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhcc
Q 001090 1046 NRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1125 (1159)
Q Consensus 1046 ~r~kLlsal~klees~~r~~DryGI~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN 1125 (1159)
.+..|...+..+.. .....-+..+++...+|+||++|++||||+||++||++++|+++++|+.||+|||+||.+||
T Consensus 14 l~~~l~~il~~l~~----~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 89 (135)
T 3rcw_A 14 LTVLLRSVLDQLQD----KDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYN 89 (135)
T ss_dssp HHHHHHHHHHHHHH----TCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHh----CCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34445555555432 11122346667777899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcC
Q 001090 1126 GRNTDLSTKIKRLSDLVTRTLSSL 1149 (1159)
Q Consensus 1126 ~p~S~I~k~Ak~L~d~F~~~LkkL 1149 (1159)
+++|.++++|..|+++|.+.|+.+
T Consensus 90 ~~~s~~~~~A~~L~~~~~~~~~~~ 113 (135)
T 3rcw_A 90 ARDTVFYRAAVRLRDQGGVVLRQA 113 (135)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888764
No 26
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=159.89 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=74.4
Q ss_pred hhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHhc
Q 001090 1070 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1148 (1159)
Q Consensus 1070 I~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN~p~S~I~k~Ak~L~d~F~~~Lkk 1148 (1159)
+..+++...+|+||++|++||||+||++||+++.|+++++|+.||+|||.||.+||+++|.++++|+.|.+.|.+.|++
T Consensus 34 F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~ 112 (123)
T 3hme_A 34 FAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFKMMSK 112 (123)
T ss_dssp SSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTCH
T ss_pred hcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4566667789999999999999999999999999999999999999999999999999999999999999999998765
No 27
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.69 E-value=5.4e-17 Score=163.01 Aligned_cols=81 Identities=15% Similarity=0.337 Sum_probs=76.8
Q ss_pred hhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHhcC
Q 001090 1070 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1149 (1159)
Q Consensus 1070 I~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN~p~S~I~k~Ak~L~d~F~~~LkkL 1149 (1159)
+..+++...+|+||.+|++||||+||++||++++|+++++|+.||+|||+||.+||+++|.|+++|+.|.++|.+.|+.+
T Consensus 51 F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~~~~~l~e~ 130 (158)
T 3uv4_A 51 FHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEY 130 (158)
T ss_dssp GTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46667777899999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 001090 1150 K 1150 (1159)
Q Consensus 1150 ~ 1150 (1159)
+
T Consensus 131 ~ 131 (158)
T 3uv4_A 131 D 131 (158)
T ss_dssp H
T ss_pred H
Confidence 5
No 28
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.67 E-value=1.7e-16 Score=161.49 Aligned_cols=105 Identities=14% Similarity=0.233 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccchhhhhhhhhccccccCcccccCCCCCCHHHHHHHHHc--CCCCCHHHHHHHHHHHH
Q 001090 1041 RIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLEN--NYYRGLEAVKHDIAVML 1118 (1159)
Q Consensus 1041 ~id~E~r~kLlsal~klees~~r~~DryGI~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN--~~YRsleaf~~DVrLI~ 1118 (1159)
.+.+..+.++...|..+... ....-+..++.. ++|+||.+|++||||+||++||++ +.|+++++|+.||+|||
T Consensus 77 ~l~~~~~~~c~~il~~l~~~----~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~ 151 (184)
T 3o36_A 77 KLTPIDKRKCERLLLFLYCH----EMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIF 151 (184)
T ss_dssp CCCHHHHHHHHHHHHHHHHS----TTCHHHHSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhc----hhhhhhcccccc-CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 36677788887777776531 111123344443 589999999999999999999998 68999999999999999
Q ss_pred HhhhhccCCCCHHHHHHHHHHHHHHHHHhcCC
Q 001090 1119 SNAESYFGRNTDLSTKIKRLSDLVTRTLSSLK 1150 (1159)
Q Consensus 1119 sNA~tFN~p~S~I~k~Ak~L~d~F~~~LkkL~ 1150 (1159)
+||.+||+++|.|+++|+.|+++|++.|+++.
T Consensus 152 ~Na~~yN~~~s~v~~~a~~L~~~f~~~~~~~~ 183 (184)
T 3o36_A 152 QNCAEFNEPDSEVANAGIKLENYFEELLKNLY 183 (184)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999998764
No 29
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.66 E-value=2.7e-16 Score=152.76 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=72.4
Q ss_pred hhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhccCCCCHH----HHHHHHHHHHHHHH
Q 001090 1070 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDL----STKIKRLSDLVTRT 1145 (1159)
Q Consensus 1070 I~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN~p~S~I----~k~Ak~L~d~F~~~ 1145 (1159)
+..+++...+|+||.+|++||||+||++||+++.|+++++|+.||+|||+||.+||+++|++ +..|..|++.+...
T Consensus 31 F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~ 110 (130)
T 3dai_A 31 FTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDRDPGDRLIRHRACALRDTAYAI 110 (130)
T ss_dssp GSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHHHHHHHHHH
Confidence 45667777899999999999999999999999999999999999999999999999999876 78899999999988
Q ss_pred Hh
Q 001090 1146 LS 1147 (1159)
Q Consensus 1146 Lk 1147 (1159)
|+
T Consensus 111 i~ 112 (130)
T 3dai_A 111 IK 112 (130)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 30
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.61 E-value=1.5e-15 Score=162.72 Aligned_cols=81 Identities=15% Similarity=0.337 Sum_probs=76.8
Q ss_pred hhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHhcC
Q 001090 1070 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1149 (1159)
Q Consensus 1070 I~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN~p~S~I~k~Ak~L~d~F~~~LkkL 1149 (1159)
+..++....+|+||.+|++||||+||++||+++.|.++++|..||+|||.||.+||+++|.|+++|..|.++|.+.|+.+
T Consensus 158 F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~s~~~~~A~~l~~~~~~~~~~~ 237 (265)
T 3uv5_A 158 FHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEY 237 (265)
T ss_dssp GTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 55667777899999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 001090 1150 K 1150 (1159)
Q Consensus 1150 ~ 1150 (1159)
.
T Consensus 238 ~ 238 (265)
T 3uv5_A 238 D 238 (265)
T ss_dssp H
T ss_pred H
Confidence 5
No 31
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.61 E-value=1.2e-15 Score=163.56 Aligned_cols=102 Identities=14% Similarity=0.298 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhc
Q 001090 1045 DNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESY 1124 (1159)
Q Consensus 1045 E~r~kLlsal~klees~~r~~DryGI~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tF 1124 (1159)
+.+..|...+..+.. .....-+..++....+|+||.+|++||||+||++||++++|+++++|++||+|||+||.+|
T Consensus 14 ~l~~~l~~il~~l~~----~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 89 (265)
T 3uv5_A 14 TLSSILESIINDMRD----LPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 89 (265)
T ss_dssp HHHHHHHHHHHHHHT----STTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc----CCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhc
Confidence 334445555555432 1112224666777789999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCC
Q 001090 1125 FGRNTDLSTKIKRLSDLVTRTLSSLK 1150 (1159)
Q Consensus 1125 N~p~S~I~k~Ak~L~d~F~~~LkkL~ 1150 (1159)
|+++|.|+.+|+.|.++|.+.++.+.
T Consensus 90 N~~~s~i~~~A~~l~~~~~~~~~~~~ 115 (265)
T 3uv5_A 90 NGPKHSLTQISQSMLDLCDEKLKEKE 115 (265)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988753
No 32
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=155.91 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=83.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccchhhhhhhhhccccccCcccccCC--CCCCHHHHHHHHHcC---CCCCHHHHHHHHH
Q 001090 1041 RIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFP--VPLSLDVIQSRLENN---YYRGLEAVKHDIA 1115 (1159)
Q Consensus 1041 ~id~E~r~kLlsal~klees~~r~~DryGI~~L~~~~e~PdY~~iIk--~PMDLsTIr~RLeN~---~YRsleaf~~DVr 1115 (1159)
.+.+..+.++...|..+.. + ....-+.+++. |+||++|+ +||||+||++||+++ +|.++++|+.||+
T Consensus 72 ~m~~~~~~~c~~iL~~l~~--~--~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~ 143 (189)
T 2ro1_A 72 KLSPANQRKCERVLLALFC--H--EPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVG 143 (189)
T ss_dssp SSCHHHHHHHHHHHHHHHH--S--TTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhccc--C--ccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHH
Confidence 4566666666666666543 1 11111233332 88999998 799999999999999 9999999999999
Q ss_pred HHHHhhhhccCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Q 001090 1116 VMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSLKAPQ 1153 (1159)
Q Consensus 1116 LI~sNA~tFN~p~S~I~k~Ak~L~d~F~~~LkkL~~~q 1153 (1159)
|||+||++|| +++.++++|+.|+++|++.|+++.+.+
T Consensus 144 Lif~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~~ 180 (189)
T 2ro1_A 144 RMFKQFNKLT-EDKADVQSIIGLQRFFETRMNEAFGDT 180 (189)
T ss_dssp HHHHHHHHHC-CSSCSSHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999 588899999999999999999977544
No 33
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.8e-15 Score=146.54 Aligned_cols=70 Identities=16% Similarity=0.311 Sum_probs=66.5
Q ss_pred cCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhccCCCCH----HHHHHHHHHHHHHHHHhc
Q 001090 1079 KTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTD----LSTKIKRLSDLVTRTLSS 1148 (1159)
Q Consensus 1079 ~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN~p~S~----I~k~Ak~L~d~F~~~Lkk 1148 (1159)
+|+||++|++||||+||++||+++.|.++++|..||+|||+||.+||+++|+ |+..|..|++.|...|+.
T Consensus 37 ~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~l~~ 110 (131)
T 2dkw_A 37 VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKDPGDKIIRHRACTLKDTAHAIIAA 110 (131)
T ss_dssp CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999995 678999999999988853
No 34
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.60 E-value=1.4e-15 Score=157.68 Aligned_cols=108 Identities=12% Similarity=0.194 Sum_probs=89.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccchhhhhhhhhccccccCcccccCCCCCCHHHHHHHHHc---CCCCCHHHHHHHHHHH
Q 001090 1041 RIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLEN---NYYRGLEAVKHDIAVM 1117 (1159)
Q Consensus 1041 ~id~E~r~kLlsal~klees~~r~~DryGI~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN---~~YRsleaf~~DVrLI 1117 (1159)
.++++.+.++...+..+... ....-+..++.. .+|+||.+|++||||+||++||++ +.|.++++|+.||+||
T Consensus 77 ~ls~~~~~~c~~il~~l~~~----~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li 151 (207)
T 3u5n_A 77 GLSPVDQRKCERLLLYLYCH----ELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLI 151 (207)
T ss_dssp SSCHHHHHHHHHHHHHHHTS----TTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhc----cchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHH
Confidence 46677777777777776431 111113344444 799999999999999999999998 6999999999999999
Q ss_pred HHhhhhccC-----------------CCCHHHHHHHHHHHHHHHHHhcCCCCC
Q 001090 1118 LSNAESYFG-----------------RNTDLSTKIKRLSDLVTRTLSSLKAPQ 1153 (1159)
Q Consensus 1118 ~sNA~tFN~-----------------p~S~I~k~Ak~L~d~F~~~LkkL~~~q 1153 (1159)
|+||.+||+ +++.|+++|+.|+.+|+..|+.+.+++
T Consensus 152 ~~Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~~ 204 (207)
T 3u5n_A 152 FKNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSDR 204 (207)
T ss_dssp HHHHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999 999999999999999999999977653
No 35
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.59 E-value=2.4e-15 Score=167.88 Aligned_cols=80 Identities=13% Similarity=0.225 Sum_probs=75.3
Q ss_pred hhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHhcC
Q 001090 1070 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1149 (1159)
Q Consensus 1070 I~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN~p~S~I~k~Ak~L~d~F~~~LkkL 1149 (1159)
+..+++...+|+||++|++||||+||++||++++|.++++|+.||+|||+||++||+++|.|+.+|..|+++|+..|++.
T Consensus 234 F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 313 (361)
T 2r10_A 234 FMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKE 313 (361)
T ss_dssp GSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 45666667899999999999999999999999999999999999999999999999999999999999999999998873
No 36
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.58 E-value=9.9e-16 Score=168.23 Aligned_cols=80 Identities=13% Similarity=0.225 Sum_probs=75.3
Q ss_pred hhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHhcC
Q 001090 1070 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1149 (1159)
Q Consensus 1070 I~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN~p~S~I~k~Ak~L~d~F~~~LkkL 1149 (1159)
+.+++....+|+||++|++||||+||++||++++|+++++|..||+|||+||++||+++|.|+.+|+.|+++|++.|++.
T Consensus 184 F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 263 (311)
T 2r0y_A 184 FMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKE 263 (311)
T ss_dssp GSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 45566667899999999999999999999999999999999999999999999999999999999999999999998873
No 37
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.55 E-value=8.3e-15 Score=159.38 Aligned_cols=81 Identities=15% Similarity=0.337 Sum_probs=75.8
Q ss_pred hhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHhcC
Q 001090 1070 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1149 (1159)
Q Consensus 1070 I~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN~p~S~I~k~Ak~L~d~F~~~LkkL 1149 (1159)
+..+++...+|+||++|++||||+||++||++++|.++++|..||+|||.||.+||+++|.|+.+|..|+++|.+.|+.+
T Consensus 191 F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~~~ 270 (292)
T 3aad_A 191 FHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEY 270 (292)
T ss_dssp GTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45666667899999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred C
Q 001090 1150 K 1150 (1159)
Q Consensus 1150 ~ 1150 (1159)
.
T Consensus 271 ~ 271 (292)
T 3aad_A 271 D 271 (292)
T ss_dssp H
T ss_pred H
Confidence 4
No 38
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.54 E-value=4.7e-15 Score=161.27 Aligned_cols=80 Identities=14% Similarity=0.319 Sum_probs=74.8
Q ss_pred hhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHhcC
Q 001090 1070 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1149 (1159)
Q Consensus 1070 I~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN~p~S~I~k~Ak~L~d~F~~~LkkL 1149 (1159)
+..++....+|+||++|++||||+||++||++++|+++++|++||+|||+||.+||+++|.|+.+|+.|.++|.+.|+.+
T Consensus 68 F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~~~ 147 (292)
T 3aad_A 68 FHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEK 147 (292)
T ss_dssp GSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHHHTHHHHTTTTTGGGS
T ss_pred hcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhhcc
Confidence 45666667899999999999999999999999999999999999999999999999999999999999999998887765
No 39
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.51 E-value=1.5e-14 Score=158.91 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=71.7
Q ss_pred hhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHhcC
Q 001090 1070 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1149 (1159)
Q Consensus 1070 I~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN~p~S~I~k~Ak~L~d~F~~~LkkL 1149 (1159)
+.+++....+|+||++|++||||+||++|| ..||.++++|++||+|||+||.+||+++|.|+++|+.|+++|.+.|.+.
T Consensus 51 F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl-~~y~~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 51 FIKLPSRKFHPQYYYKIQQPMSINEIKSRD-YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp GSSCCCTTTCHHHHHHCSSCCCHHHHHHSC-CCSTTHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcccCCChHHHcCCCCCHHHHHHHH-hcccCCHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 456677788999999999999999999999 4445599999999999999999999999999999999999999987764
No 40
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.48 E-value=3.1e-14 Score=158.95 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=71.8
Q ss_pred hhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHhcC
Q 001090 1070 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1149 (1159)
Q Consensus 1070 I~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN~p~S~I~k~Ak~L~d~F~~~LkkL 1149 (1159)
+.+++....+|+||++|++||||+||++|| ..||.++++|++||+|||.||.+||+++|.|+++|..|+++|.+.|.+.
T Consensus 101 F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl-~~y~~~~~~f~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 101 FIKLPSRKFHPQYYYKIQQPMSINEIKSRD-YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp GSSCCCTTTCTTHHHHCSSCCCHHHHHTSC-CCSTTHHHHHHHHHHHHHHHHHHHBCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcccCCChHhhcCCCcCHHHHHHHh-hccCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 456677788999999999999999999999 5555599999999999999999999999999999999999999887654
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.38 E-value=1e-12 Score=131.32 Aligned_cols=76 Identities=24% Similarity=0.439 Sum_probs=69.6
Q ss_pred hhhhccccccCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHhcC
Q 001090 1070 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1149 (1159)
Q Consensus 1070 I~~L~~~~e~PdY~~iIk~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN~p~S~I~k~Ak~L~d~F~~~LkkL 1149 (1159)
+..|.... |+||. +.||+|.+|++||+++.|+++++|+.|+.+||.||++||+++|.|+..|..|+.+|.+.+.+|
T Consensus 34 F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL 109 (147)
T 3iu6_A 34 LAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDEL 109 (147)
T ss_dssp GTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34555544 89997 999999999999999999999999999999999999999999999999999999999988765
No 42
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.02 E-value=3.2e-10 Score=116.83 Aligned_cols=67 Identities=13% Similarity=0.251 Sum_probs=62.4
Q ss_pred CCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001090 1086 FPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSLKAP 1152 (1159)
Q Consensus 1086 Ik~PMDLsTIr~RLeN~~YRsleaf~~DVrLI~sNA~tFN~p~S~I~k~Ak~L~d~F~~~LkkL~~~ 1152 (1159)
++.||||.||++||+++.|.++++|+.||.||++||..||++++.+.+++..|+.+|.+.|+++.++
T Consensus 101 ~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~~~e~~~ag~~l~~~f~~~l~~vfpw 167 (183)
T 3lqh_A 101 QQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPEIKKANSMVKSFFIRQMERVFPW 167 (183)
T ss_dssp C--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCChhhhhhhhHHHHHHHHHHHHHCCC
Confidence 6999999999999999999999999999999999999999999999999999999999999987644
No 43
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=98.70 E-value=1.7e-08 Score=108.66 Aligned_cols=58 Identities=14% Similarity=0.201 Sum_probs=53.9
Q ss_pred CCcccCCcEEEEEccCCeeeEEee-cCcceeeeeeeCCCCCEEEEecCceeEEEEecCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 58 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~-~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~ 58 (1159)
+|||.||+|+|||+.+|++++.|. +|...|.+++|||||++||++..+|+|.||++-.
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 479999999999999999999874 7788999999999999999999999999999843
No 44
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=98.66 E-value=2.2e-08 Score=101.15 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=53.5
Q ss_pred CcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCC
Q 001090 2 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 58 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~ 58 (1159)
||+.||+|+|||+.+|++++.|.+|...|.+++|||||.+||++..+|+|.||++-.
T Consensus 259 sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 259 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp ECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 456899999999999999999999999999999999999999999999999998743
No 45
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=98.56 E-value=9.4e-08 Score=102.16 Aligned_cols=60 Identities=23% Similarity=0.360 Sum_probs=55.9
Q ss_pred CCcccCCc-EEEEEccCCeeeEEee-c-CcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGK-TIVWDIWEGIPIRIYE-I-SRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~-I~lWDI~~G~~Ir~f~-~-g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+|||.||+ |+|||+.+|++++.|. + |...|.+++|||||.+||++..+|+|.||++..+.
T Consensus 211 ~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 211 ATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 58999999 9999999999999998 5 78899999999999999999999999999987653
No 46
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=98.52 E-value=9.3e-08 Score=100.79 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=55.0
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 57 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G 57 (1159)
+|||.||+|+|||+.+|++++.|.+|...|.+++|||||.+||++..+|+|.||++-
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~ 148 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL 148 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc
Confidence 489999999999999999999999999999999999999999999999999999985
No 47
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=98.52 E-value=1e-07 Score=96.16 Aligned_cols=59 Identities=8% Similarity=0.220 Sum_probs=53.6
Q ss_pred CcccCCcEEEEEccCCeeeEEee--cCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 2 SAGYDGKTIVWDIWEGIPIRIYE--ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G~~Ir~f~--~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|.|++|+|||+.+|+++++|. +|...|.+++|+|||.+||++..+|+|.||++..++
T Consensus 40 Avg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~ 100 (318)
T 4ggc_A 40 AVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 100 (318)
T ss_dssp EEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred EEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce
Confidence 56789999999999999999987 456689999999999999999999999999988765
No 48
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=98.48 E-value=1.7e-07 Score=97.45 Aligned_cols=60 Identities=22% Similarity=0.200 Sum_probs=57.3
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+|||.||+|+|||+.+|.+++.|.+|...|..++|+|||..||++..+|+|.||++..++
T Consensus 202 ~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 202 ITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred EEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 479999999999999999999999999999999999999999999999999999987765
No 49
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=98.45 E-value=1.8e-07 Score=97.26 Aligned_cols=59 Identities=12% Similarity=0.061 Sum_probs=56.5
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 59 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g 59 (1159)
+|||.||+|+|||+.+|++++.|.+|...|.+++|+|||.+||++..+|+|.||++..+
T Consensus 71 ~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~ 129 (304)
T 2ynn_A 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129 (304)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT
T ss_pred EEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC
Confidence 47899999999999999999999999999999999999999999999999999998765
No 50
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=98.44 E-value=2e-07 Score=97.78 Aligned_cols=57 Identities=14% Similarity=0.233 Sum_probs=55.0
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 57 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G 57 (1159)
+|||.||+|+|||+.+|++++.|.+|...|.+++|+|||.+||++..+|+|.||++.
T Consensus 81 ~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~ 137 (319)
T 3frx_A 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137 (319)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred EEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 489999999999999999999999999999999999999999999999999999984
No 51
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=98.42 E-value=2.9e-07 Score=99.74 Aligned_cols=57 Identities=14% Similarity=0.133 Sum_probs=53.4
Q ss_pred cccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCC
Q 001090 3 AGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 59 (1159)
Q Consensus 3 AG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g 59 (1159)
|+.||+|+|||+.+|++++.|.+|...|.+++|||||++||++..+|+|.||++-..
T Consensus 340 g~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 340 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred ecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 457999999999999999999999999999999999999999999999999998543
No 52
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=98.41 E-value=2e-07 Score=100.48 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=55.0
Q ss_pred CCcccCCcEEEEEccCCeeeEEee----cCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYE----ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 61 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~----~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~~ 61 (1159)
++|+.||+|+|||+.+|+++.++. +|...|.+++|||||++||++..+|.|.||++..+..
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~ 161 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV 161 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 478999999999999999876653 6788999999999999999999999999999988753
No 53
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=98.41 E-value=2.9e-07 Score=97.30 Aligned_cols=60 Identities=15% Similarity=0.219 Sum_probs=57.3
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+|||.||+|+|||+.+|.++..|.+|...|..++|+|||.+||++..+|.|.||++..+.
T Consensus 222 ~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~ 281 (321)
T 3ow8_A 222 VTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT 281 (321)
T ss_dssp EEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred EEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE
Confidence 479999999999999999999999999999999999999999999999999999998775
No 54
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=98.40 E-value=2.9e-07 Score=97.19 Aligned_cols=60 Identities=17% Similarity=0.310 Sum_probs=56.9
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+|||.||+|+|||+.+|.+++.|.+|...|..++|+|||.+||++..+|+|.||++..+.
T Consensus 200 ~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~ 259 (340)
T 1got_B 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259 (340)
T ss_dssp EEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred EEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc
Confidence 478999999999999999999999999999999999999999999999999999987654
No 55
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=98.40 E-value=2.6e-07 Score=92.52 Aligned_cols=60 Identities=12% Similarity=0.121 Sum_probs=55.5
Q ss_pred CCcccCCcEEEEEccCC----------------------------------------------eeeEEeecCcceeeeee
Q 001090 1 MSAGYDGKTIVWDIWEG----------------------------------------------IPIRIYEISRFRLVDGK 34 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G----------------------------------------------~~Ir~f~~g~~~i~D~~ 34 (1159)
+|||.||+|+|||+.++ .+++.|.+|...|.+++
T Consensus 234 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 313 (351)
T 3f3f_A 234 ATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVS 313 (351)
T ss_dssp EEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEE
T ss_pred EEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEE
Confidence 47899999999999987 78888888999999999
Q ss_pred eCCCCCEEEEecCceeEEEEecCCCC
Q 001090 35 FSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 35 FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
|+|||.+||++..+|.|.||++..+.
T Consensus 314 ~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 314 WNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp ECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred EcCCCCEEEEecCCCcEEEEecCcCc
Confidence 99999999999999999999998765
No 56
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=98.39 E-value=3.4e-07 Score=96.77 Aligned_cols=60 Identities=23% Similarity=0.342 Sum_probs=56.7
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.||+|+|||+.+|++++.|.++...|.+++|+|||.+||++..+|.|.||++..+.
T Consensus 180 asg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~ 239 (321)
T 3ow8_A 180 ASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN 239 (321)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC
T ss_pred EEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc
Confidence 478999999999999999999999999999999999999999999999999999987654
No 57
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=98.38 E-value=3.9e-07 Score=95.59 Aligned_cols=60 Identities=20% Similarity=0.212 Sum_probs=57.2
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+|||.||+|+|||+.++.++..|.+|...|..++|||||++||++..+|+|.||++..+.
T Consensus 170 ~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~ 229 (319)
T 3frx_A 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229 (319)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred EEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 478999999999999999999999999999999999999999999999999999998765
No 58
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=98.38 E-value=3e-07 Score=98.61 Aligned_cols=58 Identities=16% Similarity=-0.041 Sum_probs=52.1
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCC-CCCEEEEecCceeEEEEecCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSP-DGASIILSDDVGQLYILNTGQG 59 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSP-DGt~~a~tD~~G~l~Ifg~G~g 59 (1159)
+|||.||+|+|||+.+|++++.+ +|...|.+++||| ||.+||++..+|+|.||++.+.
T Consensus 286 asgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 286 ASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 47899999999999999998765 7889999999999 8999999999999999998654
No 59
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=98.37 E-value=4.2e-07 Score=92.67 Aligned_cols=60 Identities=22% Similarity=0.222 Sum_probs=56.9
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+|+|.|++|+|||+.+|.++..|.++...|..++|+|||.+||++..+|+|.||++....
T Consensus 189 ~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~ 248 (340)
T 4aow_A 189 VSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 248 (340)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred EEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc
Confidence 378999999999999999999999999999999999999999999999999999998765
No 60
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=98.37 E-value=4.5e-07 Score=92.65 Aligned_cols=60 Identities=10% Similarity=0.067 Sum_probs=57.0
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.||.|+|||+.+|++++.|.+|...|.+++|+|||.+||++..+|.|.||++..+.
T Consensus 48 ~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 107 (369)
T 3zwl_B 48 FSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ 107 (369)
T ss_dssp EEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred EEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 478999999999999999999999999999999999999999999999999999998765
No 61
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=98.36 E-value=4.7e-07 Score=92.32 Aligned_cols=60 Identities=23% Similarity=0.283 Sum_probs=54.5
Q ss_pred CCcccCCcEEEEEccCCe-----eeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGI-----PIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~-----~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+|||.||+|+|||+.++. +++.|.+|...|.+++|+|||++||++..+|.|.+|+.....
T Consensus 55 ~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~ 119 (340)
T 4aow_A 55 LSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGT 119 (340)
T ss_dssp EEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred EEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccc
Confidence 589999999999998754 678888999999999999999999999999999999987754
No 62
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=98.36 E-value=4.7e-07 Score=95.57 Aligned_cols=60 Identities=13% Similarity=0.198 Sum_probs=57.0
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+||+.||+|+|||+.+|.++..|.+|.+.|..++|+|||.+||++..+|+|.||++..+.
T Consensus 158 ~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~ 217 (340)
T 1got_B 158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217 (340)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred EEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe
Confidence 478999999999999999999999999999999999999999999999999999997765
No 63
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=98.36 E-value=3.3e-07 Score=98.48 Aligned_cols=60 Identities=23% Similarity=0.387 Sum_probs=56.1
Q ss_pred CCcccCCcEEEEEcc-CCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIW-EGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~-~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+|||.||+|+|||+. ++.+++.|.+|.+.|..++|+|||.+||++..+|+|.||++..+.
T Consensus 222 ~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~ 282 (380)
T 3iz6_a 222 ISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH 282 (380)
T ss_dssp EEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE
T ss_pred EEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc
Confidence 478999999999998 668999999999999999999999999999999999999998764
No 64
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=98.35 E-value=4.3e-07 Score=98.41 Aligned_cols=59 Identities=8% Similarity=0.220 Sum_probs=53.5
Q ss_pred CcccCCcEEEEEccCCeeeEEee--cCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 2 SAGYDGKTIVWDIWEGIPIRIYE--ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G~~Ir~f~--~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+.|.|++|+|||+.+|++++.|. +|...|.+++|||||.+||+|..+|.|.||++..++
T Consensus 120 Avgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~ 180 (420)
T 4gga_A 120 AVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 180 (420)
T ss_dssp EEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred EEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc
Confidence 46789999999999999999887 445689999999999999999999999999987765
No 65
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=98.34 E-value=3e-07 Score=100.19 Aligned_cols=60 Identities=20% Similarity=0.115 Sum_probs=57.0
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+|||.||+|+|||+.+|.+++.|.+|...|.+++|+|||.+||++..+|+|.||++..+.
T Consensus 124 ~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~ 183 (410)
T 1vyh_C 124 VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE 183 (410)
T ss_dssp EEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC
T ss_pred EEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Confidence 589999999999999999999999999999999999999999999999999999987654
No 66
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=98.34 E-value=5e-07 Score=96.53 Aligned_cols=59 Identities=20% Similarity=0.414 Sum_probs=56.2
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 59 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g 59 (1159)
+|||.||+|+|||+.+|.+++.|.+|...|..++|+|||.+||++..+|+|.||++..+
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~ 272 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD 272 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 47899999999999999999999999999999999999999999999999999998765
No 67
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=98.34 E-value=5.2e-07 Score=97.36 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=57.0
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+||+.||+|+|||+.+|++++.|.+|...|.+++|+|||.+||++..+|+|.||++..+.
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~ 198 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 198 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred EEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe
Confidence 478999999999999999999999999999999999999999999999999999987764
No 68
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=98.33 E-value=5.8e-07 Score=96.89 Aligned_cols=61 Identities=15% Similarity=0.210 Sum_probs=56.7
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCC-EEEEecCceeEEEEecCCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGA-SIILSDDVGQLYILNTGQGES 61 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt-~~a~tD~~G~l~Ifg~G~g~~ 61 (1159)
+|||.||+|+|||+.+|++++.|.+|...|..++|+|||. .||++..+|+|.||++..++.
T Consensus 143 ~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~ 204 (344)
T 4gqb_B 143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP 204 (344)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce
Confidence 5899999999999999999999999999999999999995 678999999999999987763
No 69
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=98.33 E-value=4.8e-07 Score=98.57 Aligned_cols=60 Identities=17% Similarity=0.193 Sum_probs=56.6
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+|||.||+|+|||+.+|.+++.|.+|...|.+++|+|||.+|+++..+|.|.||++..+.
T Consensus 312 ~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~ 371 (410)
T 1vyh_C 312 LSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 371 (410)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred EEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 478999999999999999999999999999999999999999999999999999987654
No 70
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=98.32 E-value=7.1e-07 Score=91.69 Aligned_cols=60 Identities=18% Similarity=0.308 Sum_probs=57.1
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+|||.||+|+|||+.+|..++.+.+|...|.+++|+|||.+||++..+|.|.||++..+.
T Consensus 39 ~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 98 (312)
T 4ery_A 39 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 98 (312)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc
Confidence 478999999999999999999999999999999999999999999999999999998765
No 71
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=98.31 E-value=5e-07 Score=100.08 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=52.9
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 57 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G 57 (1159)
+|||.||+|+|||+ +|++++.|.+|.+.|..++|||||++||++..+|+|.||++.
T Consensus 32 as~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~ 87 (577)
T 2ymu_A 32 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 87 (577)
T ss_dssp EEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 47899999999995 899999999999999999999999999999999999999963
No 72
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=98.30 E-value=5.2e-07 Score=95.57 Aligned_cols=60 Identities=18% Similarity=0.293 Sum_probs=57.1
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+||+.||+|+|||+.+|++++.|.+|...|.+++|+|||.+||++..+|+|.||++..+.
T Consensus 155 ~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 155 ISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp EEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred EEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence 478999999999999999999999999999999999999999999999999999997765
No 73
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=98.30 E-value=8.3e-07 Score=91.18 Aligned_cols=60 Identities=23% Similarity=0.379 Sum_probs=57.1
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+||+.||+|+|||+.+|++++.|..+...|..++|+|||.+||++..+|+|.||++..+.
T Consensus 123 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 182 (312)
T 4ery_A 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182 (312)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred EEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence 478999999999999999999999999999999999999999999999999999998765
No 74
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=98.29 E-value=4.6e-07 Score=97.31 Aligned_cols=59 Identities=22% Similarity=0.351 Sum_probs=56.1
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 59 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g 59 (1159)
+|||.||+|+|||+.+|.+++.|.+|...|.+++|+|||.+||++..+|.+.||++...
T Consensus 82 ~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~ 140 (380)
T 3iz6_a 82 VSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQ 140 (380)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCC
T ss_pred EEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCC
Confidence 58999999999999999999999999999999999999999999999999999998654
No 75
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=98.29 E-value=6.4e-07 Score=97.08 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=51.4
Q ss_pred CcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCC
Q 001090 2 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 59 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g 59 (1159)
+|+.||+|+|||+.+|.++..+.++...|.+++|||||++||++.+.|-+++-=+|+.
T Consensus 334 sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~gf~ 391 (393)
T 4gq1_A 334 AHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLMGFT 391 (393)
T ss_dssp EETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEGGGC
T ss_pred EECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEeCcc
Confidence 6789999999999999999999999999999999999999999988886655544544
No 76
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=98.28 E-value=8.3e-07 Score=90.87 Aligned_cols=60 Identities=18% Similarity=0.118 Sum_probs=56.8
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCC-CCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSP-DGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSP-DGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.||+|+|||+.+|++++.|.++...|.+++|+| ||..||++..+|.|.||++..+.
T Consensus 89 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 149 (366)
T 3k26_A 89 AVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 149 (366)
T ss_dssp EEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE
T ss_pred EEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe
Confidence 4789999999999999999999999999999999999 99999999999999999997764
No 77
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=98.28 E-value=8.8e-07 Score=90.51 Aligned_cols=60 Identities=12% Similarity=0.294 Sum_probs=55.0
Q ss_pred CCcccCCcEEEEEccC-Ceee-EEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWE-GIPI-RIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~-G~~I-r~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.||+|+|||+.+ |..+ +.+.+|...|.+++|+|||.+||+++.+|.|.||++..+.
T Consensus 58 ~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 119 (368)
T 3mmy_A 58 IAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ 119 (368)
T ss_dssp EEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred EEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC
Confidence 4789999999999998 7766 7788899999999999999999999999999999998765
No 78
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=98.28 E-value=8.8e-07 Score=93.16 Aligned_cols=61 Identities=13% Similarity=0.082 Sum_probs=55.1
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecC-cceeeeeeeCCCCCEEEEecCceeEEEEecCCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEIS-RFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 61 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g-~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~~ 61 (1159)
+|||.||+|+|||+.+|.+++++..+ ...|..++|+|||.+||++..+|.|.||++..+..
T Consensus 143 ~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~ 204 (343)
T 3lrv_A 143 IWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQ 204 (343)
T ss_dssp EEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTS
T ss_pred EEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCC
Confidence 47899999999999999999888654 45899999999999999999999999999988763
No 79
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=98.28 E-value=9.8e-07 Score=93.52 Aligned_cols=60 Identities=13% Similarity=0.263 Sum_probs=55.1
Q ss_pred CCcccCCcEEEEEccCC--eeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEG--IPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G--~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+|||.||+|+|||+.++ +++..|.+|...|.+++|+|||.+||++..+|+|.||++..+.
T Consensus 77 ~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~ 138 (345)
T 3fm0_A 77 ASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED 138 (345)
T ss_dssp EEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS
T ss_pred EEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC
Confidence 47999999999999988 4788899999999999999999999999999999999987653
No 80
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=98.27 E-value=1e-06 Score=88.50 Aligned_cols=59 Identities=24% Similarity=0.302 Sum_probs=55.5
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++++.||.|+|||+.+|++++.|.++...|..++|+||| .|+++..+|.|.||++..++
T Consensus 199 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~ 257 (313)
T 3odt_A 199 ISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGS 257 (313)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCC
T ss_pred EEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCc
Confidence 478999999999999999999999999999999999999 69999999999999998775
No 81
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=98.26 E-value=6.6e-07 Score=96.98 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=55.9
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCC-EEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGA-SIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt-~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+|||.|++|+|||+.++.++..+.+++..|..++|+|+|. +||++..+|.|.||++..+.
T Consensus 160 as~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~ 220 (393)
T 4gq1_A 160 ASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNL 220 (393)
T ss_dssp EEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC
T ss_pred EEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCc
Confidence 5899999999999999999999999999999999999985 79999999999999987764
No 82
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=98.25 E-value=9.3e-07 Score=94.54 Aligned_cols=60 Identities=25% Similarity=0.414 Sum_probs=56.5
Q ss_pred CCcccCCcEEEEEccCCeeeEEe--ecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIY--EISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f--~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+|||.||+|+|||+.+|+++..+ .+|...|.+++|+|||..||++..+|+|.||++..+.
T Consensus 148 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 209 (402)
T 2aq5_A 148 LSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT 209 (402)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE
T ss_pred EEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc
Confidence 47899999999999999999999 7888999999999999999999999999999998765
No 83
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=98.24 E-value=1.6e-06 Score=86.95 Aligned_cols=60 Identities=22% Similarity=0.267 Sum_probs=55.9
Q ss_pred CCcccCCcEEEEEccCC---------eeeEEeecCcceeeeeeeCCC--CCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEG---------IPIRIYEISRFRLVDGKFSPD--GASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G---------~~Ir~f~~g~~~i~D~~FSPD--Gt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+|||.||+|+|||+.+| .++..+.++...|.+++|+|| |.+||++..+|.|.||++..+.
T Consensus 75 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 75 ASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS 145 (351)
T ss_dssp EEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT
T ss_pred EEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH
Confidence 47899999999999999 678889999999999999999 9999999999999999987765
No 84
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=98.23 E-value=1.3e-06 Score=87.79 Aligned_cols=59 Identities=15% Similarity=0.282 Sum_probs=54.7
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++||.||.|+|||+.+|++++.|..+...|..++|+|||. |+++..+|.|.||++..+.
T Consensus 240 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 240 VSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp EEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred EEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence 4789999999999999999999999999999999999998 6678899999999998765
No 85
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=98.22 E-value=1.4e-06 Score=92.90 Aligned_cols=59 Identities=15% Similarity=0.208 Sum_probs=52.6
Q ss_pred CCcccCCcEEEEEccCCee----eEEeecCcc------------eeeeeeeCCCCCEEEEecCceeEEEEecCC-CC
Q 001090 1 MSAGYDGKTIVWDIWEGIP----IRIYEISRF------------RLVDGKFSPDGASIILSDDVGQLYILNTGQ-GE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~----Ir~f~~g~~------------~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~-g~ 60 (1159)
+||+.||+|+|||+.+|.+ ++.|.++.. .|..++|+|||.+||+++. |.|.||++.. +.
T Consensus 243 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~ 318 (447)
T 3dw8_B 243 VYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENR 318 (447)
T ss_dssp EEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSS
T ss_pred EEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcc
Confidence 4789999999999999998 889988765 9999999999999999999 9999999976 44
No 86
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=98.22 E-value=1.8e-06 Score=90.73 Aligned_cols=60 Identities=10% Similarity=0.124 Sum_probs=54.2
Q ss_pred CCcccCCcEEEEEccCCeee-EEeec-CcceeeeeeeCCCCCEEEEecCceeEEEEecCCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPI-RIYEI-SRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 61 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~I-r~f~~-g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~~ 61 (1159)
++|+.||+|+|||+.+|.++ ..|.+ |...|.+++|||||.+||++. +|.|.||++..+..
T Consensus 186 asg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~ 247 (343)
T 3lrv_A 186 ALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVG 247 (343)
T ss_dssp EEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTT
T ss_pred EEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCc
Confidence 46899999999999999998 88988 889999999999999999998 45999999987653
No 87
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=98.22 E-value=1.4e-06 Score=91.84 Aligned_cols=60 Identities=22% Similarity=0.330 Sum_probs=54.9
Q ss_pred CCcccCCcEEEEEccC-------CeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWE-------GIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~-------G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+|||.||+|+|||+.+ |.+++.|.+|...|.+++|+|||.+||++..+|+|.||++-.+.
T Consensus 43 ~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~ 109 (343)
T 2xzm_R 43 ISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT 109 (343)
T ss_dssp EEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSC
T ss_pred EEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc
Confidence 5899999999999975 56788899999999999999999999999999999999987764
No 88
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=98.22 E-value=1.3e-06 Score=89.48 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=55.9
Q ss_pred CCcccCCcEEEEEccCCeeeEEe---ecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIY---EISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f---~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+||+.||+|+|||+.+|+++..| .++...|.+++|+|||.+|+++..+|.|.||++..+.
T Consensus 132 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 194 (366)
T 3k26_A 132 LSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKR 194 (366)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHH
T ss_pred EEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCc
Confidence 47899999999999999999999 6788999999999999999999999999999987654
No 89
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=98.21 E-value=1.3e-06 Score=92.62 Aligned_cols=60 Identities=23% Similarity=0.230 Sum_probs=56.8
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.||+|+|||+.+|.+++.|.+|...|.+++|+|||.+||++..+|+|.||++..+.
T Consensus 113 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 172 (420)
T 3vl1_A 113 ILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS 172 (420)
T ss_dssp EEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence 478999999999999999999999999999999999999999999999999999998765
No 90
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=98.21 E-value=1.3e-06 Score=91.97 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=48.0
Q ss_pred CCcccCCcEEEEEcc-------CCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecC
Q 001090 1 MSAGYDGKTIVWDIW-------EGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 57 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~-------~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G 57 (1159)
+|||.||+|+|||+. ++.+++.|.+|...|.+++|||||.+||++..+|+|.||++.
T Consensus 74 as~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~ 137 (330)
T 2hes_X 74 AAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD 137 (330)
T ss_dssp EEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECC
T ss_pred EEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEecc
Confidence 478999999999995 456788899999999999999999999999999999999984
No 91
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=98.20 E-value=1.5e-06 Score=93.25 Aligned_cols=60 Identities=15% Similarity=0.112 Sum_probs=56.5
Q ss_pred CCcccCCcEEEEEccCCeeeEEeec--CcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEI--SRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~--g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.||+|+|||+.+|++++.|.+ |...|..++|+|||.+||++..+|+|.||++..+.
T Consensus 186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 247 (437)
T 3gre_A 186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV 247 (437)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE
T ss_pred EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc
Confidence 4789999999999999999999998 78999999999999999999999999999998765
No 92
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=98.19 E-value=1.4e-06 Score=91.57 Aligned_cols=60 Identities=12% Similarity=0.197 Sum_probs=56.6
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCC-CEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDG-ASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDG-t~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+||+.||+|+|||+.+|++++.|.+|...|.+++|+||| ..||++..+|.|.||++..+.
T Consensus 279 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 279 LSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp EEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred EEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 478999999999999999999999999999999999999 899999999999999997764
No 93
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=98.19 E-value=1.5e-06 Score=99.73 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=56.7
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+|||.||+|+|||+.+|++++.|.+|...|.+++|||||.+||++..+|+|.||++..+.
T Consensus 164 ~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~ 223 (611)
T 1nr0_A 164 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT 223 (611)
T ss_dssp EEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred EEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc
Confidence 479999999999999999999999999999999999999999999999999999986654
No 94
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=98.18 E-value=2e-06 Score=91.98 Aligned_cols=60 Identities=15% Similarity=0.318 Sum_probs=55.8
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCC--CCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSP--DGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSP--DGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+|||.||+|+|||+.+|++++.|.+|...|..++|+| +|.+||++..+|+|.||++..+.
T Consensus 170 ~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~ 231 (354)
T 2pbi_B 170 LTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ 231 (354)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC
T ss_pred EEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 4789999999999999999999999999999999887 68999999999999999998765
No 95
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=98.18 E-value=1.6e-06 Score=89.90 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=52.9
Q ss_pred CCcccCCcEEEEEccCCe----eeEEeecCcceeeeeeeCCCC---CEEEEecCceeEEEEecCC
Q 001090 1 MSAGYDGKTIVWDIWEGI----PIRIYEISRFRLVDGKFSPDG---ASIILSDDVGQLYILNTGQ 58 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~----~Ir~f~~g~~~i~D~~FSPDG---t~~a~tD~~G~l~Ifg~G~ 58 (1159)
+|||.||+|+|||+.+|. ++..|.+|...|.+++||||| .+||++..+|+|.||++..
T Consensus 174 ~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 174 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp EEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred EEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 478999999999999987 677888999999999999995 8999999999999999755
No 96
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=98.18 E-value=1.6e-06 Score=90.24 Aligned_cols=60 Identities=10% Similarity=0.057 Sum_probs=54.7
Q ss_pred CcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCCC
Q 001090 2 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 61 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~~ 61 (1159)
.++.||.|.|||+.+|+++..|.+|...|..++|+|||.+||+++.+|.|.||++..++.
T Consensus 309 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 309 FVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp EEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred EEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence 467899999999999999999999999999999999999999999999999999988753
No 97
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=98.17 E-value=1.5e-06 Score=91.03 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=53.7
Q ss_pred CCcccCCcEEEEEccCCe--eeEEeecCcceeeeeeeCCC--CCEEEEecCceeEEEEecCCC
Q 001090 1 MSAGYDGKTIVWDIWEGI--PIRIYEISRFRLVDGKFSPD--GASIILSDDVGQLYILNTGQG 59 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~--~Ir~f~~g~~~i~D~~FSPD--Gt~~a~tD~~G~l~Ifg~G~g 59 (1159)
+|||.||+|+|||+.+|. ++..|.+|...|.+++|+|| |..||++..+|+|.||++..+
T Consensus 75 ~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~ 137 (316)
T 3bg1_A 75 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE 137 (316)
T ss_dssp EEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred EEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence 489999999999999994 67778889999999999999 899999999999999998654
No 98
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=98.17 E-value=1.7e-06 Score=99.41 Aligned_cols=60 Identities=22% Similarity=0.323 Sum_probs=55.9
Q ss_pred CCcccCCcEEEEEccCCeeeEEee-------cCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYE-------ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~-------~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+|||.||+|+|||+.+|++++.|. +|.+.|.+++|||||++||++..+|+|.||++..+.
T Consensus 206 as~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~ 272 (611)
T 1nr0_A 206 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK 272 (611)
T ss_dssp EEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred EEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence 489999999999999999999995 678899999999999999999999999999998765
No 99
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.17 E-value=1.9e-06 Score=93.17 Aligned_cols=59 Identities=10% Similarity=0.048 Sum_probs=56.0
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+|||.||+|+|||+.+|++++.|.+|.+.|.+++|+||| .||++..+|+|.||++..+.
T Consensus 136 ~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~ 194 (464)
T 3v7d_B 136 ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC 194 (464)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE
T ss_pred EEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc
Confidence 478999999999999999999999999999999999999 99999999999999987764
No 100
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=98.16 E-value=2.3e-06 Score=91.47 Aligned_cols=59 Identities=7% Similarity=0.014 Sum_probs=53.1
Q ss_pred CcccCCcEEEEEccCCe----------------eeEEeecCcceeeeeeeCCCCCEEEEecCcee-EEEEecCCCC
Q 001090 2 SAGYDGKTIVWDIWEGI----------------PIRIYEISRFRLVDGKFSPDGASIILSDDVGQ-LYILNTGQGE 60 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G~----------------~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~-l~Ifg~G~g~ 60 (1159)
||+.||+|+|||+.+|. +++.|.+|...|.+++|||||++||++..+|+ |.||++..+.
T Consensus 154 sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~ 229 (355)
T 3vu4_A 154 NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV 229 (355)
T ss_dssp ESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC
T ss_pred CCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 37899999999999987 38889999999999999999999999999999 9999998775
No 101
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=98.16 E-value=1.8e-06 Score=90.48 Aligned_cols=59 Identities=25% Similarity=0.285 Sum_probs=54.4
Q ss_pred CCcccCCcEEEEEccCCeeeEEee------cC---------------cceeeeeeeCCCC----------CEEEEecCce
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYE------IS---------------RFRLVDGKFSPDG----------ASIILSDDVG 49 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~------~g---------------~~~i~D~~FSPDG----------t~~a~tD~~G 49 (1159)
++|+.||+|+|||+.+|+++..|. ++ ...|..++|+||| ..||++..+|
T Consensus 307 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg 386 (397)
T 1sq9_A 307 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR 386 (397)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT
T ss_pred EEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCC
Confidence 478999999999999999999999 77 8899999999999 7999999999
Q ss_pred eEEEEecCCC
Q 001090 50 QLYILNTGQG 59 (1159)
Q Consensus 50 ~l~Ifg~G~g 59 (1159)
.|.||++..|
T Consensus 387 ~i~iw~~~~g 396 (397)
T 1sq9_A 387 SIRWFREAGG 396 (397)
T ss_dssp EEEEEEEEC-
T ss_pred cEEEEEcCCC
Confidence 9999998765
No 102
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=98.15 E-value=2e-06 Score=89.03 Aligned_cols=59 Identities=10% Similarity=0.084 Sum_probs=53.7
Q ss_pred CCcccCCcEEEEEccC--CeeeEEeecCcceeeeeeeCCC--CCEEEEecCceeEEEEecCCC
Q 001090 1 MSAGYDGKTIVWDIWE--GIPIRIYEISRFRLVDGKFSPD--GASIILSDDVGQLYILNTGQG 59 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~--G~~Ir~f~~g~~~i~D~~FSPD--Gt~~a~tD~~G~l~Ifg~G~g 59 (1159)
+|||.||+|+|||+.+ +++++.|.+|...|.+++|+|+ |..||++..+|+|.||++..+
T Consensus 25 as~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~ 87 (297)
T 2pm7_B 25 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENG 87 (297)
T ss_dssp EEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSS
T ss_pred EEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCC
Confidence 5899999999999985 4789999999999999999974 999999999999999998765
No 103
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=98.15 E-value=2.1e-06 Score=99.45 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=57.8
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 61 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~~ 61 (1159)
+|||.||+|+|||+.++.+++.|.+|.+.|..++|||||.+||++..+|+|.||++..+..
T Consensus 535 ~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~ 595 (694)
T 3dm0_A 535 VSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK 595 (694)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Confidence 4789999999999999999999999999999999999999999999999999999988763
No 104
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=98.15 E-value=1.6e-06 Score=100.48 Aligned_cols=57 Identities=23% Similarity=0.377 Sum_probs=54.7
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 57 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G 57 (1159)
+|||.||+|+|||+.+|.+++.|.+|...|.+++|||||.+||++..+|+|.||++-
T Consensus 446 ~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~ 502 (694)
T 3dm0_A 446 LSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL 502 (694)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred EEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC
Confidence 489999999999999999999999999999999999999999999999999999964
No 105
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=98.14 E-value=1.1e-06 Score=91.84 Aligned_cols=60 Identities=7% Similarity=0.100 Sum_probs=51.7
Q ss_pred CCcccCCcEEEEEccCC--eeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEG--IPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G--~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.||+|+|||+.+| .+++.|.+|...|.+++|+|||.+||++..+|.|.||++..+.
T Consensus 27 ~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~ 88 (377)
T 3dwl_C 27 VTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG 88 (377)
T ss_dssp ECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------
T ss_pred EEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 47889999999999999 8899999999999999999999999999999999999997765
No 106
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=98.13 E-value=3e-06 Score=85.72 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=56.7
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.||.|+|||+.+|++++.|.++...|..++|+|||..|+++..+|.|.+|++..+.
T Consensus 157 ~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 216 (337)
T 1gxr_A 157 FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR 216 (337)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred EEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc
Confidence 468899999999999999999999999999999999999999999999999999998765
No 107
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=98.13 E-value=2.4e-06 Score=90.62 Aligned_cols=56 Identities=20% Similarity=0.156 Sum_probs=51.9
Q ss_pred CCcccCCcEEEEEccCCe--eeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEec
Q 001090 1 MSAGYDGKTIVWDIWEGI--PIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 56 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~--~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~ 56 (1159)
+||+.||+|+|||+.++. ++..|.+|...|.+++|||||.+||++..+|+|.||++
T Consensus 166 ~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred EEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 478999999999999996 56778899999999999999999999999999999986
No 108
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.12 E-value=2.5e-06 Score=92.34 Aligned_cols=60 Identities=22% Similarity=0.285 Sum_probs=57.1
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.||+|+|||+.+|+++..|.++...|.+++|+|||..||++..+|.|.||++..+.
T Consensus 284 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 284 VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE 343 (464)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence 478999999999999999999999999999999999999999999999999999997765
No 109
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=98.12 E-value=1.7e-06 Score=92.75 Aligned_cols=60 Identities=8% Similarity=0.043 Sum_probs=55.1
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCC-CEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDG-ASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDG-t~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.||+|+|||+.+|++++.|.++...|..++||||| .+||++..+|+|.||++-.++
T Consensus 243 a~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~ 303 (357)
T 4g56_B 243 ACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE 303 (357)
T ss_dssp EEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE
T ss_pred EEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc
Confidence 368899999999999999999999999999999999998 578899999999999987665
No 110
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=98.11 E-value=2.6e-06 Score=87.17 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=52.6
Q ss_pred CCcccCCcEEEEEccCC-------------------eeeEEeecCcceeeeeeeCCCCCEEE-EecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEG-------------------IPIRIYEISRFRLVDGKFSPDGASII-LSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G-------------------~~Ir~f~~g~~~i~D~~FSPDGt~~a-~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.||.|+|||+.++ .++..+.+|...|.+++|||||.+|| ++..+|.|.||++...+
T Consensus 276 ~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 276 LTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred EEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 47899999999999976 46777888999999999999999999 79999999999987643
No 111
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=98.11 E-value=1.6e-06 Score=90.75 Aligned_cols=60 Identities=18% Similarity=0.137 Sum_probs=53.7
Q ss_pred CCcccCCcEEEEEcc------------------CCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCCC
Q 001090 1 MSAGYDGKTIVWDIW------------------EGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 61 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~------------------~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~~ 61 (1159)
++|+.||+|+|||+. .|.++..| +|...|..++|||||.+||++..+|+|.||++..+..
T Consensus 162 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 162 AAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp EEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred EEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence 478999999999995 57888888 8889999999999999999999999999999988754
No 112
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=98.10 E-value=3.1e-06 Score=91.36 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=52.3
Q ss_pred CCcccCCcEEEEEccCCeeeEEe-------ecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIY-------EISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 59 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f-------~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g 59 (1159)
++|+.||+|+|||+.+|.+++.+ .+|...|.+++|+|||.+||++..+|.|.||++-..
T Consensus 223 ~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 223 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp EEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred EEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 47899999999999999999888 467789999999999999999999999999998654
No 113
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=98.10 E-value=4e-06 Score=85.71 Aligned_cols=60 Identities=18% Similarity=0.245 Sum_probs=56.3
Q ss_pred CCcccCCcEEEEEccC-CeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWE-GIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~-G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.||.|+|||+.+ +.+++.+..+...|..++|+|||.+|+++..+|.|.||++..+.
T Consensus 191 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 251 (369)
T 3zwl_B 191 IAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ 251 (369)
T ss_dssp EEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCc
Confidence 3678999999999999 89999999999999999999999999999999999999998765
No 114
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=98.10 E-value=2.8e-06 Score=88.96 Aligned_cols=59 Identities=12% Similarity=0.075 Sum_probs=53.4
Q ss_pred CCcccCCcEEEEEccCCe--eeEEeecCcceeeeeeeCC--CCCEEEEecCceeEEEEecCCC
Q 001090 1 MSAGYDGKTIVWDIWEGI--PIRIYEISRFRLVDGKFSP--DGASIILSDDVGQLYILNTGQG 59 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~--~Ir~f~~g~~~i~D~~FSP--DGt~~a~tD~~G~l~Ifg~G~g 59 (1159)
+|||.||+|+|||+.+|. ++..|.+|...|.+++|+| +|..||++..+|+|.||++..+
T Consensus 29 asgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~ 91 (316)
T 3bg1_A 29 ATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENG 91 (316)
T ss_dssp EEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSS
T ss_pred EEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCC
Confidence 589999999999999986 5778889999999999997 4999999999999999998654
No 115
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=98.09 E-value=2.6e-06 Score=95.18 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=53.4
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 57 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G 57 (1159)
+||+.||+|+|||+.+|.++..+.+|...|..++|||||.+||++..+|+|.||++.
T Consensus 166 as~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 166 AVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp EEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred EEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence 478999999999999998887777888899999999999999999999999999987
No 116
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=98.08 E-value=3.2e-06 Score=87.29 Aligned_cols=60 Identities=7% Similarity=0.093 Sum_probs=55.9
Q ss_pred CCcccCCcEEEEEccCCe--eeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGI--PIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~--~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.||+|+|||+.+|+ +++.|.+|...|..++|+|||.+||++..+|+|.||++..+.
T Consensus 24 ~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 85 (372)
T 1k8k_C 24 AICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 85 (372)
T ss_dssp EEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred EEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence 467899999999999998 999999999999999999999999999999999999986654
No 117
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=98.08 E-value=4e-06 Score=86.32 Aligned_cols=60 Identities=18% Similarity=0.456 Sum_probs=55.6
Q ss_pred CCcccCCcEEEEEccCCe--eeEEeecCcceeeeeeeCCC--CCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGI--PIRIYEISRFRLVDGKFSPD--GASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~--~Ir~f~~g~~~i~D~~FSPD--Gt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+||+.||+|+|||+.+|. ++..+.++...|.+++|+|+ |..|+++..+|+|.||++..+.
T Consensus 73 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 136 (379)
T 3jrp_A 73 ASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG 136 (379)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS
T ss_pred EEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC
Confidence 478999999999999998 78888889999999999999 9999999999999999997663
No 118
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=98.08 E-value=2.9e-06 Score=90.77 Aligned_cols=60 Identities=20% Similarity=0.324 Sum_probs=55.9
Q ss_pred CCcccCCcEEEEEccCC-------eeeEEeecCcceeeeeeeCCCC-CEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEG-------IPIRIYEISRFRLVDGKFSPDG-ASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G-------~~Ir~f~~g~~~i~D~~FSPDG-t~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+||+.||+|+|||+.+| .+++.|.+|...|..++|+||| ..||+++.+|+|.||++..+.
T Consensus 98 ~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 165 (402)
T 2aq5_A 98 ASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA 165 (402)
T ss_dssp EEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE
T ss_pred EEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC
Confidence 47899999999999999 7899999999999999999999 699999999999999998765
No 119
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=98.06 E-value=3.3e-06 Score=93.57 Aligned_cols=55 Identities=24% Similarity=0.323 Sum_probs=52.1
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEec
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 56 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~ 56 (1159)
+||+.||+|+||| .+|++++.|.+|...|..++|||||++||+++.+|.|.||++
T Consensus 483 as~~~d~~i~iw~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 483 ASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp EEEETTSEEEEEE-TTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred EEEeCCCEEEEEc-CCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence 4789999999999 589999999999999999999999999999999999999996
No 120
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=98.06 E-value=3.3e-06 Score=92.16 Aligned_cols=59 Identities=12% Similarity=0.076 Sum_probs=51.6
Q ss_pred CCcccCCcEEEEEccCCeeeEE--eecCcceeeeeeeCC-CCCEEEEecCceeEEEEecCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRI--YEISRFRLVDGKFSP-DGASIILSDDVGQLYILNTGQG 59 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~--f~~g~~~i~D~~FSP-DGt~~a~tD~~G~l~Ifg~G~g 59 (1159)
+|||.||+|+|||+.+|..... +.+|.+.|.+++|+| ||.+|+++..+|+|.||++-.+
T Consensus 136 asGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~ 197 (435)
T 4e54_B 136 AVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN 197 (435)
T ss_dssp EEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC
T ss_pred EEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC
Confidence 4789999999999999875544 457889999999999 7999999999999999998543
No 121
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=98.05 E-value=4.7e-06 Score=86.91 Aligned_cols=60 Identities=17% Similarity=0.331 Sum_probs=56.1
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++++.||.|+|||+.+|+++..+..+...|..++|+|||.+||++..+|.|.||++..+.
T Consensus 304 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 304 ISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred EEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 478999999999999999999999999999999999999999999999999999986543
No 122
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.05 E-value=3.5e-06 Score=91.39 Aligned_cols=59 Identities=20% Similarity=0.188 Sum_probs=53.8
Q ss_pred CCcccCCcEEEEEccCCeeeEEee-----cCcceeeeeeeCCCCCEEEEecCcee----EEEEecCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYE-----ISRFRLVDGKFSPDGASIILSDDVGQ----LYILNTGQG 59 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~-----~g~~~i~D~~FSPDGt~~a~tD~~G~----l~Ifg~G~g 59 (1159)
++||.||+|+|||+.+|+.++.+. ++.+.|..++|||||..||+++.+|+ |+||+++..
T Consensus 376 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 376 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 478999999999999999999983 56789999999999999999999998 999998753
No 123
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=98.04 E-value=4.6e-06 Score=87.89 Aligned_cols=59 Identities=10% Similarity=0.152 Sum_probs=54.4
Q ss_pred CCcccCCcEEEEEccCC--eeeEEeecCcceeeeeeeCCC--CCEEEEecCceeEEEEecCCC
Q 001090 1 MSAGYDGKTIVWDIWEG--IPIRIYEISRFRLVDGKFSPD--GASIILSDDVGQLYILNTGQG 59 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G--~~Ir~f~~g~~~i~D~~FSPD--Gt~~a~tD~~G~l~Ifg~G~g 59 (1159)
+|||.||+|+|||+.++ +++++|.+|.+.|+.++|+|| |..||++..+|+|.||++..+
T Consensus 169 ~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 169 ASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred EEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 48999999999999988 789999999999999999999 889999999999999998544
No 124
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=98.04 E-value=3.9e-06 Score=87.98 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=55.9
Q ss_pred CCcccC---CcEEEEEccCCeeeEEeec-------------CcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYD---GKTIVWDIWEGIPIRIYEI-------------SRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~D---G~I~lWDI~~G~~Ir~f~~-------------g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.| |.|+|||+.+|++++.|.+ +...|..++|+|||.+||++..+|.|.||++..++
T Consensus 249 ~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (397)
T 1sq9_A 249 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 324 (397)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred EEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 367888 9999999999999999998 89999999999999999999999999999987664
No 125
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=98.03 E-value=3.5e-06 Score=86.72 Aligned_cols=60 Identities=10% Similarity=0.090 Sum_probs=55.3
Q ss_pred CCcccCCcEEEEEcc--CCeeeEEeecCcceeeeeeeCCC--CCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIW--EGIPIRIYEISRFRLVDGKFSPD--GASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~--~G~~Ir~f~~g~~~i~D~~FSPD--Gt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.||.|+|||+. ++.+++.|.+|...|.+++|+|+ |.+||++..+|+|.||++..+.
T Consensus 27 ~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 90 (379)
T 3jrp_A 27 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR 90 (379)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE
T ss_pred EEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc
Confidence 478899999999999 77889999999999999999988 9999999999999999987763
No 126
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=98.03 E-value=5.6e-06 Score=88.94 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=55.2
Q ss_pred CCcccCCcEEEEEccCCeeeEEeec-CcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEI-SRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~-g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+++|.||.|+|||+.+|.+++.+.. +...|.+++|+|||.+||++..+|.|.||++..+.
T Consensus 107 ~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 167 (401)
T 4aez_A 107 VAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT 167 (401)
T ss_dssp EEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred EEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe
Confidence 4688999999999999999999987 57789999999999999999999999999987764
No 127
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=98.01 E-value=6.1e-06 Score=85.23 Aligned_cols=60 Identities=12% Similarity=0.015 Sum_probs=55.5
Q ss_pred CCcccCCcEEEEEc------------------cCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDI------------------WEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI------------------~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.||+|+|||+ .+|.+++.|.++...|..++|+|||.+||++..+|.|.||++..+.
T Consensus 158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 235 (372)
T 1k8k_C 158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM 235 (372)
T ss_dssp EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT
T ss_pred EEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 46889999999995 4899999999999999999999999999999999999999997765
No 128
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=98.01 E-value=4.3e-06 Score=85.59 Aligned_cols=60 Identities=10% Similarity=0.211 Sum_probs=54.7
Q ss_pred CCcccCCcEEEEEccCCe-eeEEeecCcceeeee------eeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGI-PIRIYEISRFRLVDG------KFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~-~Ir~f~~g~~~i~D~------~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.||+|+|||+.+|. +++.|.+|...|.++ +|+|||.+||++..+|.|.||++..+.
T Consensus 84 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~ 150 (357)
T 3i2n_A 84 ATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD 150 (357)
T ss_dssp EEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS
T ss_pred EEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC
Confidence 478999999999999999 999999999999999 679999999999999999999998765
No 129
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.00 E-value=5.7e-06 Score=101.20 Aligned_cols=60 Identities=18% Similarity=0.176 Sum_probs=57.5
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+|||.||+|+|||+.+|++++.+.+|...|..++|||||.+||++..+|+|.||++.++.
T Consensus 631 ~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~ 690 (1249)
T 3sfz_A 631 ASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK 690 (1249)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc
Confidence 478999999999999999999999999999999999999999999999999999998875
No 130
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=98.00 E-value=4.8e-06 Score=96.31 Aligned_cols=60 Identities=22% Similarity=0.432 Sum_probs=56.9
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.||+|+|||+.+|.+++.|.++.+.|..++|||||..||+++.+|.|.||++..+.
T Consensus 29 a~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 88 (814)
T 3mkq_A 29 LTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE 88 (814)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC
T ss_pred EEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 468899999999999999999999999999999999999999999999999999987765
No 131
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=98.00 E-value=7.4e-06 Score=86.38 Aligned_cols=59 Identities=14% Similarity=0.266 Sum_probs=54.2
Q ss_pred CCcccCCcEEEEEccC----CeeeEEeecCcceeeeeeeCC-CCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWE----GIPIRIYEISRFRLVDGKFSP-DGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~----G~~Ir~f~~g~~~i~D~~FSP-DGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+||+.||+|+|||+.+ +.+++.+ ++...|..++|+| ||.+||++..+|.|.||++..+.
T Consensus 221 ~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 221 ATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS 284 (383)
T ss_dssp EEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred EEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence 4789999999999999 7788888 6889999999999 99999999999999999987765
No 132
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=98.00 E-value=6.9e-06 Score=90.79 Aligned_cols=79 Identities=10% Similarity=0.093 Sum_probs=64.7
Q ss_pred CCcccCCcEEEEEccCCeeeEEeec-CcceeeeeeeCC----------CCCEEEEecCceeEEEEecCCC-CCccCCc--
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEI-SRFRLVDGKFSP----------DGASIILSDDVGQLYILNTGQG-ESQKDAK-- 66 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~-g~~~i~D~~FSP----------DGt~~a~tD~~G~l~Ifg~G~g-~~~~~~p-- 66 (1159)
++|+.||.|+|||+.+|++++.|.+ |...|..++||| ||.+||+++.+|.|.||++..+ .......
T Consensus 504 ~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h 583 (615)
T 1pgu_A 504 AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH 583 (615)
T ss_dssp EEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS
T ss_pred EEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcC
Confidence 4788999999999999999999998 899999999999 9999999999999999999876 3222111
Q ss_pred ----cccccccCCcccee
Q 001090 67 ----YDQFFLGDYRPLVQ 80 (1159)
Q Consensus 67 ----~EQFF~tDYrpLir 80 (1159)
..--|+.|.+ |+.
T Consensus 584 ~~~v~~l~~s~~~~-l~s 600 (615)
T 1pgu_A 584 KDGVNNLLWETPST-LVS 600 (615)
T ss_dssp TTCEEEEEEEETTE-EEE
T ss_pred ccceEEEEEcCCCC-eEE
Confidence 1225777776 654
No 133
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=97.99 E-value=4.8e-06 Score=89.38 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=54.7
Q ss_pred CCcccCCcEEEEEccCCeeeEEee-cCcceeeee----eeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYE-ISRFRLVDG----KFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~-~g~~~i~D~----~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+||+.||+|+|||+.+|++++.|. +++..|..+ +|+|||.+||++..+|.|.||++..+.
T Consensus 230 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 294 (437)
T 3gre_A 230 ILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH 294 (437)
T ss_dssp EEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE
T ss_pred EEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc
Confidence 478999999999999999999997 788899999 777789999999999999999997765
No 134
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=97.99 E-value=4e-06 Score=94.24 Aligned_cols=61 Identities=18% Similarity=0.277 Sum_probs=49.2
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcc---eeeeeeeCCCCCEE------------EEecCceeEEEEecCCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRF---RLVDGKFSPDGASI------------ILSDDVGQLYILNTGQGES 61 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~---~i~D~~FSPDGt~~------------a~tD~~G~l~Ifg~G~g~~ 61 (1159)
+|||+|++|+|||+.+|+++++|.+|+. .+..++|||||.++ |++..+++|.+|+...+..
T Consensus 197 aSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~ 272 (356)
T 2w18_A 197 LGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS 272 (356)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEE
T ss_pred EEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE
Confidence 4789999999999999999999987653 57777999999987 5577889999999877753
No 135
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=97.98 E-value=7.3e-06 Score=83.74 Aligned_cols=59 Identities=14% Similarity=0.211 Sum_probs=54.1
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeee--CCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKF--SPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~F--SPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+||+.||+|+|||+.+|.+++ +.++...|..++| +|||.+|+++..+|.|.||++..+.
T Consensus 102 ~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 102 FTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp EEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred EEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence 478999999999999999887 5568899999999 9999999999999999999998775
No 136
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=97.97 E-value=2.6e-06 Score=92.99 Aligned_cols=60 Identities=22% Similarity=0.374 Sum_probs=53.5
Q ss_pred CCcccCCcEEEEEccCCeeeEEee---cCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYE---ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~---~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+|||.||+|+|||+.++.....|. +|...|..++|||||.+||++..+|+|.||++..+.
T Consensus 267 ~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp EEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred EEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence 378999999999999998776653 577899999999999999999999999999988765
No 137
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=97.96 E-value=6.1e-06 Score=100.76 Aligned_cols=58 Identities=10% Similarity=0.087 Sum_probs=52.6
Q ss_pred CCcccCCcEEEEEccCC---------------------------------------------eeeEEeecCcceeeeeee
Q 001090 1 MSAGYDGKTIVWDIWEG---------------------------------------------IPIRIYEISRFRLVDGKF 35 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G---------------------------------------------~~Ir~f~~g~~~i~D~~F 35 (1159)
+||+.||+|+|||+.+| +++.+|.+|.+.|..++|
T Consensus 504 Asgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svaf 583 (902)
T 2oaj_A 504 AVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINN 583 (902)
T ss_dssp EEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEE
T ss_pred EEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEe
Confidence 47999999999999988 357888899999999999
Q ss_pred CCCCCEEEEecCceeEEEEecCCC
Q 001090 36 SPDGASIILSDDVGQLYILNTGQG 59 (1159)
Q Consensus 36 SPDGt~~a~tD~~G~l~Ifg~G~g 59 (1159)
|||| +||+++.+|+|.||++-..
T Consensus 584 SpdG-~lAsgs~D~tv~lwd~~~~ 606 (902)
T 2oaj_A 584 SNIG-FVGIAYAAGSLMLIDRRGP 606 (902)
T ss_dssp CBTS-EEEEEETTSEEEEEETTTT
T ss_pred cCCc-EEEEEeCCCcEEEEECCCC
Confidence 9999 9999999999999997543
No 138
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=97.95 E-value=8.7e-06 Score=87.73 Aligned_cols=57 Identities=21% Similarity=0.148 Sum_probs=48.0
Q ss_pred CcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 2 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
|+++||+|+|||+.+|+++..+. ++..|.+++|||||++||++.+ +.+.+|..-.+.
T Consensus 152 s~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~ 208 (365)
T 4h5i_A 152 SSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGS 208 (365)
T ss_dssp ESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCC
T ss_pred ECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCc
Confidence 67799999999999999998885 6678999999999999999875 456666665554
No 139
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=97.93 E-value=4.1e-06 Score=96.70 Aligned_cols=59 Identities=8% Similarity=-0.014 Sum_probs=55.3
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 59 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g 59 (1159)
++|+.|++|+|||+.+|.+++.|.+|...|.+++|||||..||++..+|+|.||++..+
T Consensus 371 ~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 371 IYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp EEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred EEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 46889999999999999999999999999999999999999999999999999997543
No 140
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.92 E-value=1.1e-05 Score=84.01 Aligned_cols=59 Identities=22% Similarity=0.357 Sum_probs=55.0
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.||+|+||| .+|.+++.|.++...|.+++|+|||.+|++++.+|.|.+|++..+.
T Consensus 124 ~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 124 VTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT 182 (425)
T ss_dssp EEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE
T ss_pred EEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc
Confidence 4688999999999 8999999999999999999999999999999999999999987654
No 141
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.91 E-value=1.4e-05 Score=80.86 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=53.7
Q ss_pred CCcccCCcEEEEEccCCe--eeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGI--PIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~--~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.||+|.|||+.++. .+..+..+...|..++|+|||.+|++++.+|.|.+|++..+.
T Consensus 113 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 174 (337)
T 1gxr_A 113 IVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT 174 (337)
T ss_dssp EEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred EEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 368899999999999998 666777888999999999999999999999999999998765
No 142
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=97.91 E-value=9.3e-06 Score=83.09 Aligned_cols=60 Identities=15% Similarity=0.116 Sum_probs=54.6
Q ss_pred CCcccCCcEEEEEccCC------eeeEEeecCcc---------eeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEG------IPIRIYEISRF---------RLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G------~~Ir~f~~g~~---------~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.||.|.|||+..+ .++..|..+.. .|..++|+|||.+||+++.+|.|.||++..+.
T Consensus 210 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 210 ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp EEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred EEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence 46889999999999998 88889987754 99999999999999999999999999998765
No 143
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=97.90 E-value=1.3e-05 Score=84.63 Aligned_cols=58 Identities=10% Similarity=0.198 Sum_probs=54.4
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCC-EEEEecCceeEEEEecCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGA-SIILSDDVGQLYILNTGQG 59 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt-~~a~tD~~G~l~Ifg~G~g 59 (1159)
++|+.||+|+|||+ +|.++..|.+|...|.+++|+|||. .||++..+|.|.||++..+
T Consensus 179 ~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 237 (383)
T 3ei3_B 179 ATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNI 237 (383)
T ss_dssp EEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGC
T ss_pred EEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCC
Confidence 47899999999999 7999999999999999999999999 9999999999999999763
No 144
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=97.90 E-value=9.8e-06 Score=82.90 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=53.4
Q ss_pred CCcccCCcEEEEEccCCe---eeEEeecCcceeeeeeeCCCCC-EEEEecCceeEEEEec-CCCC
Q 001090 1 MSAGYDGKTIVWDIWEGI---PIRIYEISRFRLVDGKFSPDGA-SIILSDDVGQLYILNT-GQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~---~Ir~f~~g~~~i~D~~FSPDGt-~~a~tD~~G~l~Ifg~-G~g~ 60 (1159)
++|+.||+|+|||+.++. .++.+.++...|..++|+|||. +||++..+|+|.+|++ ..+.
T Consensus 27 ~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 91 (342)
T 1yfq_A 27 LITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS 91 (342)
T ss_dssp EEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS
T ss_pred EEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc
Confidence 478999999999999998 4566668889999999999999 9999999999999998 6553
No 145
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.88 E-value=1.2e-05 Score=92.94 Aligned_cols=59 Identities=12% Similarity=0.061 Sum_probs=55.9
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 59 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g 59 (1159)
++||.||+|+|||+.+|+++..|.+|...|..++|+|||.+||+++.+|.|.||++..+
T Consensus 71 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 129 (814)
T 3mkq_A 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129 (814)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT
T ss_pred EEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC
Confidence 47889999999999999999999999999999999999999999999999999998765
No 146
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.88 E-value=1.2e-05 Score=83.53 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=55.3
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCE-EEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGAS-IILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~-~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.||.|.|||+.+|.++..|.++...|..++|+|||.+ ||++..+|.|.||++..+.
T Consensus 160 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~ 220 (408)
T 4a11_B 160 AVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS 220 (408)
T ss_dssp EEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSS
T ss_pred EEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCC
Confidence 36789999999999999999999999999999999999995 8999999999999996653
No 147
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.87 E-value=1.1e-05 Score=98.66 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=56.9
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+|||.||+|+|||+.+|.++..+.+|...|..++|+|||..||++..+|+|.+|++..+.
T Consensus 717 ~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~ 776 (1249)
T 3sfz_A 717 ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 776 (1249)
T ss_dssp EEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTE
T ss_pred EEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCc
Confidence 478999999999999999999999999999999999999999999999999999997764
No 148
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.87 E-value=1.7e-05 Score=85.26 Aligned_cols=60 Identities=12% Similarity=0.085 Sum_probs=55.6
Q ss_pred CCcccCCcEEEEEcc-CCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIW-EGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~-~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.||+|+|||+. .+.++..|.+|.+.|..++|+|||.+||++..+|.|.||++..+.
T Consensus 190 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 250 (401)
T 4aez_A 190 SSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI 250 (401)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS
T ss_pred EEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC
Confidence 478999999999999 677899999999999999999999999999999999999998764
No 149
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=97.87 E-value=1.3e-05 Score=87.65 Aligned_cols=59 Identities=3% Similarity=0.001 Sum_probs=54.5
Q ss_pred CCcccCCcEEEEEccCCeeeEEee-cCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~-~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+||+.||+|+|||+.+|.++..|. +|...|..++|+ ||.+||++..+|.|.||++..+.
T Consensus 214 ~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~ 273 (450)
T 2vdu_B 214 ITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGK 273 (450)
T ss_dssp EEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCC
T ss_pred EEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCc
Confidence 478999999999999999999865 778899999999 99999999999999999998775
No 150
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=97.87 E-value=1.6e-05 Score=87.90 Aligned_cols=60 Identities=22% Similarity=0.212 Sum_probs=56.7
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcc---eeeeeeeCCC-CCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRF---RLVDGKFSPD-GASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~---~i~D~~FSPD-Gt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.||+|+|||+.+|++++.|.++.. .|..++|+|| |.+||++..+|.|.||++..++
T Consensus 177 ~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 177 MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp EEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred EEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 4789999999999999999999999888 9999999999 9999999999999999998776
No 151
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=1.5e-05 Score=87.21 Aligned_cols=60 Identities=17% Similarity=0.253 Sum_probs=54.6
Q ss_pred CCcccCCcEEEEEcc--CCeeeEEee--cCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIW--EGIPIRIYE--ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~--~G~~Ir~f~--~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.||+|+|||+. +|.+++.+. .+...|..++|+|||.+||+++.+|.+++|++..+.
T Consensus 119 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~ 182 (450)
T 2vdu_B 119 ACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIP 182 (450)
T ss_dssp EEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCC
T ss_pred EEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcc
Confidence 378899999999999 999999997 456889999999999999999999999999987664
No 152
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=97.79 E-value=1.9e-05 Score=84.13 Aligned_cols=60 Identities=8% Similarity=0.212 Sum_probs=52.6
Q ss_pred CCcccCCcEEEEEccCCe-----------eeEEeecCc------------ceeeeeeeCCCC--CEEEEecCceeEEEEe
Q 001090 1 MSAGYDGKTIVWDIWEGI-----------PIRIYEISR------------FRLVDGKFSPDG--ASIILSDDVGQLYILN 55 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~-----------~Ir~f~~g~------------~~i~D~~FSPDG--t~~a~tD~~G~l~Ifg 55 (1159)
++||.||+|+|||+.+|. ++..|.+|. ..|.+++|+|+| .+|+++..+|+|.||+
T Consensus 44 a~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~ 123 (447)
T 3dw8_B 44 ATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWK 123 (447)
T ss_dssp EEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEE
T ss_pred EEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEe
Confidence 478999999999999998 688898887 889999999999 8999999999999999
Q ss_pred cCCCC
Q 001090 56 TGQGE 60 (1159)
Q Consensus 56 ~G~g~ 60 (1159)
+..+.
T Consensus 124 ~~~~~ 128 (447)
T 3dw8_B 124 ISERD 128 (447)
T ss_dssp EEEEE
T ss_pred ccccc
Confidence 87643
No 153
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.79 E-value=2.5e-05 Score=84.91 Aligned_cols=58 Identities=19% Similarity=0.166 Sum_probs=54.6
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.||+|+|||+.+|++++.|.+|...|..++| ||..||++..+|+|.||++..+.
T Consensus 147 ~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~ 204 (435)
T 1p22_A 147 VSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE 204 (435)
T ss_dssp EEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred EEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc
Confidence 47899999999999999999999999999999999 99999999999999999987764
No 154
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=97.77 E-value=4.7e-05 Score=74.90 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=49.2
Q ss_pred CcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCC-CC
Q 001090 2 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ-GE 60 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~-g~ 60 (1159)
+++.|++|.|||+.+|+... +..+...|..++|||||.+||++. .|.|++|++.. +.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~ 74 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS 74 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS
T ss_pred CCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC
Confidence 46899999999999999774 455778899999999999999986 78999999987 65
No 155
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=97.77 E-value=1.7e-05 Score=83.50 Aligned_cols=60 Identities=12% Similarity=0.147 Sum_probs=54.9
Q ss_pred CCcccCCcEEEEEccC----CeeeEEeecCcceeeeeeeCCC-CCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWE----GIPIRIYEISRFRLVDGKFSPD-GASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~----G~~Ir~f~~g~~~i~D~~FSPD-Gt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.||+|+|||+.+ ..+++.+.+|...|..++|+|| |..||++..+|.|.||++..+.
T Consensus 83 ~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 147 (416)
T 2pm9_A 83 AGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCT 147 (416)
T ss_dssp EEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTS
T ss_pred EEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCc
Confidence 4688999999999998 4589999999999999999999 9999999999999999997764
No 156
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.76 E-value=3.4e-05 Score=81.13 Aligned_cols=60 Identities=13% Similarity=0.239 Sum_probs=52.1
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEE-EEecCceeEEEEecCCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASI-ILSDDVGQLYILNTGQGES 61 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~-a~tD~~G~l~Ifg~G~g~~ 61 (1159)
++++.||+|+|||+.+|++++.+..+. .+..++|||||.+| +++..+|+|.+|++..++.
T Consensus 6 vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~ 66 (391)
T 1l0q_A 6 IANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred EEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE
Confidence 478999999999999999999888654 48999999999987 5666899999999977653
No 157
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=97.74 E-value=2.8e-05 Score=94.92 Aligned_cols=59 Identities=10% Similarity=0.154 Sum_probs=53.3
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecC------------------cceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEIS------------------RFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g------------------~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|+.||+| |||+.+|++++.|.++ ...|.+++|||||.+||++..+|+|.||++..++
T Consensus 168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 468899999 9999999999999755 3679999999999999999999999999987764
No 158
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=97.74 E-value=2e-05 Score=90.95 Aligned_cols=60 Identities=13% Similarity=0.100 Sum_probs=53.3
Q ss_pred CCcccCCcEEEEEccCCe-eeEEeecCcceeeee--eeCCCC-CEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGI-PIRIYEISRFRLVDG--KFSPDG-ASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~-~Ir~f~~g~~~i~D~--~FSPDG-t~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+||+.||+|+|||+.+|. ++..|.+|...|.++ +|+||| ..||++..+|+|.||++..+.
T Consensus 281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~ 344 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA 344 (524)
T ss_dssp EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH
T ss_pred EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC
Confidence 479999999999999985 566788999999999 789999 999999999999999986643
No 159
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=97.71 E-value=2.6e-05 Score=85.20 Aligned_cols=58 Identities=14% Similarity=0.314 Sum_probs=53.3
Q ss_pred CCcccCCcEEEEEccC-CeeeEEeecCcceeeeeeeCCCCC-EEEEecCceeEEEEecCC
Q 001090 1 MSAGYDGKTIVWDIWE-GIPIRIYEISRFRLVDGKFSPDGA-SIILSDDVGQLYILNTGQ 58 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~-G~~Ir~f~~g~~~i~D~~FSPDGt-~~a~tD~~G~l~Ifg~G~ 58 (1159)
++|+.||+|+|||+.+ +.++..|.+|...|..++|+|||. .||++..+|+|.||++..
T Consensus 294 ~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 294 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp EEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred EEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 4789999999999998 678999999999999999999995 689999999999999865
No 160
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.64 E-value=6.1e-05 Score=79.23 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=50.8
Q ss_pred CcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEec-CceeEEEEecCCCC
Q 001090 2 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSD-DVGQLYILNTGQGE 60 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD-~~G~l~Ifg~G~g~ 60 (1159)
+++.||+|+|||+.+|++++.+..+. .+..++|||||.+|+++. ..|+|.+|++..++
T Consensus 49 ~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~ 107 (391)
T 1l0q_A 49 ANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT 107 (391)
T ss_dssp EEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred ECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCe
Confidence 56799999999999999999988766 899999999999886554 66999999998765
No 161
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.63 E-value=4.6e-05 Score=82.63 Aligned_cols=58 Identities=21% Similarity=0.206 Sum_probs=54.2
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+||+.||+|+|||+.+|++++.|.+|...|+.++|+ |..||++..+|+|.||++..++
T Consensus 133 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~ 190 (445)
T 2ovr_B 133 VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE 190 (445)
T ss_dssp EEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE
T ss_pred EEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc
Confidence 479999999999999999999999999999999997 7799999999999999987764
No 162
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=97.62 E-value=5.3e-05 Score=89.89 Aligned_cols=59 Identities=19% Similarity=0.468 Sum_probs=55.3
Q ss_pred CCcccCCcEEEEEccCCe--eeEEeecCcceeeeeeeCCC--CCEEEEecCceeEEEEecCCC
Q 001090 1 MSAGYDGKTIVWDIWEGI--PIRIYEISRFRLVDGKFSPD--GASIILSDDVGQLYILNTGQG 59 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~--~Ir~f~~g~~~i~D~~FSPD--Gt~~a~tD~~G~l~Ifg~G~g 59 (1159)
+|||.||+|+|||+.+|. ++..+.++...|..++|+|| |..|+++..+|+|.||++..+
T Consensus 71 ~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~ 133 (753)
T 3jro_A 71 ASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 133 (753)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred EEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC
Confidence 479999999999999998 78888899999999999999 999999999999999998765
No 163
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.61 E-value=4.9e-05 Score=82.56 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=32.1
Q ss_pred CcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEec
Q 001090 2 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 56 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~ 56 (1159)
+|+.||+|+|||+.+|++++.|.++...|..++| +|..|+++..+|.|.||++
T Consensus 271 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~ 323 (435)
T 1p22_A 271 SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDI 323 (435)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEET
T ss_pred EEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEEC
Confidence 4556666666666666666666666666666666 4556666666666666654
No 164
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=97.61 E-value=4e-05 Score=90.88 Aligned_cols=59 Identities=10% Similarity=0.089 Sum_probs=54.8
Q ss_pred CCcccCCcEEEEEcc--CCeeeEEeecCcceeeeeeeCCC--CCEEEEecCceeEEEEecCCC
Q 001090 1 MSAGYDGKTIVWDIW--EGIPIRIYEISRFRLVDGKFSPD--GASIILSDDVGQLYILNTGQG 59 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~--~G~~Ir~f~~g~~~i~D~~FSPD--Gt~~a~tD~~G~l~Ifg~G~g 59 (1159)
+|||.||+|+|||+. ++.+++.|.+|...|.+++|+|+ |..||++..+|+|.||++..+
T Consensus 25 atg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~ 87 (753)
T 3jro_A 25 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG 87 (753)
T ss_dssp EEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT
T ss_pred EEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC
Confidence 478999999999999 66789999999999999999999 999999999999999998765
No 165
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=97.58 E-value=5.2e-05 Score=90.07 Aligned_cols=57 Identities=14% Similarity=0.193 Sum_probs=50.3
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcc-----eeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRF-----RLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~-----~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+++|.||+|+|||..+ ++..|. |+. .|.+++|||||++||++..+|+|.||++-.+.
T Consensus 101 As~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~ 162 (588)
T 2j04_A 101 AVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS 162 (588)
T ss_dssp EEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCT
T ss_pred EEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence 4789999999999655 888888 665 59999999999999999999999999987653
No 166
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=97.58 E-value=6.4e-05 Score=82.11 Aligned_cols=59 Identities=8% Similarity=0.044 Sum_probs=54.9
Q ss_pred CCcccCCcEEEEEccC----------CeeeEEeecCcceeeeeeeCCCCC-EEEEecCceeEEEEecCCC
Q 001090 1 MSAGYDGKTIVWDIWE----------GIPIRIYEISRFRLVDGKFSPDGA-SIILSDDVGQLYILNTGQG 59 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~----------G~~Ir~f~~g~~~i~D~~FSPDGt-~~a~tD~~G~l~Ifg~G~g 59 (1159)
++|+.||+|.|||+.+ +.++..|.+|...|+.++|+|+|. .||+++.+|+|.||++..+
T Consensus 145 at~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 214 (430)
T 2xyi_A 145 ATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINAT 214 (430)
T ss_dssp EEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSC
T ss_pred EEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCC
Confidence 4789999999999998 789999999999999999999999 9999999999999999764
No 167
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=97.51 E-value=0.00016 Score=82.99 Aligned_cols=91 Identities=12% Similarity=0.090 Sum_probs=66.0
Q ss_pred cccCCcEEEEEccCCeeeEEeecCcc---eeeeeeeCCCCCEEEEecC---------ceeEEEEecCCCCC--ccCC---
Q 001090 3 AGYDGKTIVWDIWEGIPIRIYEISRF---RLVDGKFSPDGASIILSDD---------VGQLYILNTGQGES--QKDA--- 65 (1159)
Q Consensus 3 AG~DG~I~lWDI~~G~~Ir~f~~g~~---~i~D~~FSPDGt~~a~tD~---------~G~l~Ifg~G~g~~--~~~~--- 65 (1159)
++.||+|+|||+.+|++.+.+.++.. .|.+++|||||++||++.. .|+|+||++..+.. +...
T Consensus 33 ~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~ 112 (723)
T 1xfd_A 33 REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVS 112 (723)
T ss_dssp CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCC
T ss_pred EeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccc
Confidence 47899999999999999888877654 4999999999999998855 38999999987753 1111
Q ss_pred ---ccccccccCCccceecCC--CCccccccCc
Q 001090 66 ---KYDQFFLGDYRPLVQDTY--GNVLDQETQL 93 (1159)
Q Consensus 66 ---p~EQFF~tDYrpLirD~~--g~vlDe~Tq~ 93 (1159)
...-.|+.|.+-|+.-.+ =+++|..+..
T Consensus 113 ~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~ 145 (723)
T 1xfd_A 113 NAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQ 145 (723)
T ss_dssp SCCCSBCCBCSSTTCEEEEETTEEEEESSSSSC
T ss_pred cccccccEECCCCCEEEEEECCeEEEEECCCCc
Confidence 112358888877665333 2355555543
No 168
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=97.50 E-value=4.8e-05 Score=84.96 Aligned_cols=58 Identities=16% Similarity=0.244 Sum_probs=50.9
Q ss_pred CcccCCcEEEEEccCC--------ee---eEEeecCcceeeeeeeCCC-CCEEEEecCceeEEEEecCCC
Q 001090 2 SAGYDGKTIVWDIWEG--------IP---IRIYEISRFRLVDGKFSPD-GASIILSDDVGQLYILNTGQG 59 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G--------~~---Ir~f~~g~~~i~D~~FSPD-Gt~~a~tD~~G~l~Ifg~G~g 59 (1159)
||+.||+|+|||+.++ ++ ++.+.+|...|.+++|+|+ |..||++..+|+|.||++..+
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~ 182 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET 182 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC
Confidence 7899999999999887 22 4556678899999999998 899999999999999998765
No 169
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=97.46 E-value=9.8e-05 Score=85.33 Aligned_cols=92 Identities=15% Similarity=0.162 Sum_probs=66.9
Q ss_pred cccCCcEEEEEccCCeeeEEeecCcc---eeeeeeeCCCCCEEEEecC---------ceeEEEEecCCCCC---ccCCc-
Q 001090 3 AGYDGKTIVWDIWEGIPIRIYEISRF---RLVDGKFSPDGASIILSDD---------VGQLYILNTGQGES---QKDAK- 66 (1159)
Q Consensus 3 AG~DG~I~lWDI~~G~~Ir~f~~g~~---~i~D~~FSPDGt~~a~tD~---------~G~l~Ifg~G~g~~---~~~~p- 66 (1159)
++.||+|.|||+.+|++.+.+.++.. .|...+|||||++||++.. +|+|+||++..++. .....
T Consensus 32 ~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~ 111 (719)
T 1z68_A 32 QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRP 111 (719)
T ss_dssp ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSS
T ss_pred EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcc
Confidence 34699999999999999888776544 4999999999999998766 79999999987764 22111
Q ss_pred -cccccccCCcccee--cCCCCccccccCcC
Q 001090 67 -YDQFFLGDYRPLVQ--DTYGNVLDQETQLA 94 (1159)
Q Consensus 67 -~EQFF~tDYrpLir--D~~g~vlDe~Tq~~ 94 (1159)
..-.|+.|.+-|.. |.+=++.|..|...
T Consensus 112 ~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~ 142 (719)
T 1z68_A 112 IQYLCWSPVGSKLAYVYQNNIYLKQRPGDPP 142 (719)
T ss_dssp BCCEEECSSTTCEEEEETTEEEEESSTTSCC
T ss_pred cccceECCCCCEEEEEECCeEEEEeCCCCCc
Confidence 12268888876665 33334666655543
No 170
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.45 E-value=0.00014 Score=77.57 Aligned_cols=61 Identities=8% Similarity=-0.043 Sum_probs=54.0
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEec-CceeEEEEecCCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSD-DVGQLYILNTGQGES 61 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD-~~G~l~Ifg~G~g~~ 61 (1159)
++++.||+|++||+.+|++++.+..+...+..++|+|||.+|++++ .+|.|.+|++..+..
T Consensus 185 ~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~ 246 (433)
T 3bws_A 185 VSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE 246 (433)
T ss_dssp EEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred EEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE
Confidence 4678999999999999999999998888999999999999986554 789999999977653
No 171
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=97.44 E-value=0.00013 Score=84.10 Aligned_cols=78 Identities=6% Similarity=0.026 Sum_probs=61.6
Q ss_pred CcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEec--CCCCCccCC-----cccccccc-
Q 001090 2 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT--GQGESQKDA-----KYDQFFLG- 73 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~--G~g~~~~~~-----p~EQFF~t- 73 (1159)
+++.||+|.|||+.+|++++.+..|+. +..++|||||++|++++.+|+|.+|++ .++...... |.--.|+.
T Consensus 154 s~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~ 232 (543)
T 1nir_A 154 TLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKF 232 (543)
T ss_dssp EEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCS
T ss_pred EEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCC
Confidence 577899999999999999999986655 889999999999999999999999999 665432222 22335776
Q ss_pred ---CCcccee
Q 001090 74 ---DYRPLVQ 80 (1159)
Q Consensus 74 ---DYrpLir 80 (1159)
|.+-|+-
T Consensus 233 ~~~dg~~l~v 242 (543)
T 1nir_A 233 KGYEDRYTIA 242 (543)
T ss_dssp TTCTTTEEEE
T ss_pred cCCCCCEEEE
Confidence 7665543
No 172
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.41 E-value=9.8e-05 Score=78.77 Aligned_cols=59 Identities=10% Similarity=-0.035 Sum_probs=52.9
Q ss_pred CcccCCcEEEEEccCCeeeEEe-----ecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 2 SAGYDGKTIVWDIWEGIPIRIY-----EISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G~~Ir~f-----~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+++.||+|.|||+.+|++++.+ .++.+.|.+++|+|||..|+++..+|+|.+|++..+.
T Consensus 139 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 139 PLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp EBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred EeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 5778999999999999999854 3677899999999999999999999999999987765
No 173
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=97.37 E-value=0.00022 Score=73.01 Aligned_cols=59 Identities=17% Similarity=0.107 Sum_probs=49.6
Q ss_pred CcccCCcEEEEEccCCeeeEEeecCc------ceeeeeeeCCCCCEEEEecCc------------eeEEEEecCCCC
Q 001090 2 SAGYDGKTIVWDIWEGIPIRIYEISR------FRLVDGKFSPDGASIILSDDV------------GQLYILNTGQGE 60 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G~~Ir~f~~g~------~~i~D~~FSPDGt~~a~tD~~------------G~l~Ifg~G~g~ 60 (1159)
+++.+++|.+||+.+|+.++.+..+. ..+..++|||||++|++++.. ++|++|++..+.
T Consensus 60 ~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 60 LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred EeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 45678999999999999998887443 237899999999999998866 999999997754
No 174
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.00011 Score=87.51 Aligned_cols=58 Identities=9% Similarity=0.049 Sum_probs=50.2
Q ss_pred CCcccCCcEEEEEccCCe-------eeEEe----ecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGI-------PIRIY----EISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~-------~Ir~f----~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++||.||+|+|||+.+|. .++.| .+|...|+.++||||| ||++..++.+.+|++-.+.
T Consensus 145 Asgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 145 VVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp EEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSS
T ss_pred EEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCc
Confidence 479999999999999996 47777 4566799999999999 8888889999999986655
No 175
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=97.32 E-value=0.00034 Score=71.85 Aligned_cols=59 Identities=8% Similarity=0.031 Sum_probs=50.5
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecC-ceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDD-VGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~-~G~l~Ifg~G~g~ 60 (1159)
++++.|++|.+||+.+|++++.+..+...+ .++|||||.+|++++. .|+|++|++..+.
T Consensus 14 v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~ 73 (331)
T 3u4y_A 14 VVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEP 73 (331)
T ss_dssp EEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSS
T ss_pred EEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 367889999999999999999988776666 9999999997766655 8999999987765
No 176
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=97.23 E-value=0.00051 Score=75.63 Aligned_cols=78 Identities=14% Similarity=0.224 Sum_probs=55.6
Q ss_pred CcccCC---cEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEE-EecCc--eeEEEEecCCCCCccCCc-----cccc
Q 001090 2 SAGYDG---KTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASII-LSDDV--GQLYILNTGQGESQKDAK-----YDQF 70 (1159)
Q Consensus 2 SAG~DG---~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a-~tD~~--G~l~Ifg~G~g~~~~~~p-----~EQF 70 (1159)
++++|+ +|+|||+.+|++.+ +..+.+.+..++|||||++|| ++... ..|++|++..+.....+. ..--
T Consensus 195 ~~s~~~~~~~i~~~d~~tg~~~~-l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~ 273 (415)
T 2hqs_A 195 YVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPT 273 (415)
T ss_dssp EEECTTSSCEEEEEETTTCCEEE-EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEE
T ss_pred EEEecCCCcEEEEEECCCCcEEE-eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceE
Confidence 456664 99999999999864 566778899999999999999 55444 459999997765322111 1225
Q ss_pred cccCCcccee
Q 001090 71 FLGDYRPLVQ 80 (1159)
Q Consensus 71 F~tDYrpLir 80 (1159)
|+.|.+-|+.
T Consensus 274 ~spdg~~l~~ 283 (415)
T 2hqs_A 274 WFPDSQNLAF 283 (415)
T ss_dssp ECTTSSEEEE
T ss_pred ECCCCCEEEE
Confidence 7777765554
No 177
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=97.14 E-value=0.00054 Score=70.05 Aligned_cols=56 Identities=14% Similarity=0.184 Sum_probs=48.4
Q ss_pred CCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCCCc
Q 001090 6 DGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ 62 (1159)
Q Consensus 6 DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~~~ 62 (1159)
+++|.+||+.+|+.++.+..+. .+..++|||||.+|+++...|.|.+|++.+++..
T Consensus 274 ~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 274 LNRLAKYDLKQRKLIKAANLDH-TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp ESEEEEEETTTTEEEEEEECSS-CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred cCeEEEEECccCeEEEEEcCCC-CccceEECCCCCEEEEecCCCeEEEEecccccee
Confidence 6789999999999999887543 4678999999999999988999999999877643
No 178
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=97.12 E-value=0.00057 Score=79.00 Aligned_cols=78 Identities=18% Similarity=0.178 Sum_probs=58.1
Q ss_pred Cccc-CC-----cEEEEEccCCeeeEEeecCc------------------------ceeeeeeeCCCCCEEEEecCceeE
Q 001090 2 SAGY-DG-----KTIVWDIWEGIPIRIYEISR------------------------FRLVDGKFSPDGASIILSDDVGQL 51 (1159)
Q Consensus 2 SAG~-DG-----~I~lWDI~~G~~Ir~f~~g~------------------------~~i~D~~FSPDGt~~a~tD~~G~l 51 (1159)
+++. || +|.|||+.+|++.+++..+. ..|.+++|||||++||++.. |+|
T Consensus 53 ~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i 131 (741)
T 2ecf_A 53 FLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-GEL 131 (741)
T ss_dssp EEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET-TEE
T ss_pred EEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-CcE
Confidence 4566 88 99999999999988887543 34899999999999998887 999
Q ss_pred EEEecCCC---CCccCCc-----cccccccCCcccee
Q 001090 52 YILNTGQG---ESQKDAK-----YDQFFLGDYRPLVQ 80 (1159)
Q Consensus 52 ~Ifg~G~g---~~~~~~p-----~EQFF~tDYrpLir 80 (1159)
++|++..+ .....+. ..--|+.|.+-|+.
T Consensus 132 ~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~ 168 (741)
T 2ecf_A 132 YLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSF 168 (741)
T ss_dssp EEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEE
T ss_pred EEEECCCCCcceEEEcccCCcccccccCCCCCCEEEE
Confidence 99999776 4222111 11247777775554
No 179
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=97.12 E-value=0.00053 Score=69.56 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=49.8
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCcc--eeeeeeeCCCCCEEE-EecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISRF--RLVDGKFSPDGASII-LSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~~--~i~D~~FSPDGt~~a-~tD~~G~l~Ifg~G~g~ 60 (1159)
++++.||+|.+||+.+|+.++.+..+.. .+..++|||||.+|+ ++...|+|.+|++..++
T Consensus 5 v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~ 67 (337)
T 1pby_B 5 LAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE 67 (337)
T ss_dssp EEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC
T ss_pred EEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC
Confidence 3678999999999999999998875443 588999999998765 55567999999987765
No 180
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=97.07 E-value=0.00088 Score=67.94 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=48.2
Q ss_pred CCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCCC
Q 001090 6 DGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 61 (1159)
Q Consensus 6 DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~~ 61 (1159)
|+.|.+||+.+|+.++.+..+ ..+..++|+|||.+|+++...|.|.||++..++.
T Consensus 259 ~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 259 YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence 688999999999999888754 3578999999999999999999999999987753
No 181
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=97.02 E-value=0.00051 Score=77.72 Aligned_cols=53 Identities=9% Similarity=0.088 Sum_probs=47.5
Q ss_pred CcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCce--eEEEEecCCCC
Q 001090 7 GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVG--QLYILNTGQGE 60 (1159)
Q Consensus 7 G~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G--~l~Ifg~G~g~ 60 (1159)
++|.+||+.+|++. .+..+.+.+...+|||||+.||+++..| +|++|++..+.
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~ 229 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS 229 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC
T ss_pred eEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc
Confidence 78999999999865 5677888899999999999999999999 99999987765
No 182
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.96 E-value=0.00058 Score=75.18 Aligned_cols=72 Identities=22% Similarity=0.134 Sum_probs=56.1
Q ss_pred CcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCce---eEEEEecCCCCCccCC--c---cccccccCCccc
Q 001090 7 GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVG---QLYILNTGQGESQKDA--K---YDQFFLGDYRPL 78 (1159)
Q Consensus 7 G~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G---~l~Ifg~G~g~~~~~~--p---~EQFF~tDYrpL 78 (1159)
++|+|||+. |..++.+.++...|..++|||||++||++...+ .|++|++..++..... + ..--|+.|.+-|
T Consensus 159 ~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~l 237 (415)
T 2hqs_A 159 YELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL 237 (415)
T ss_dssp EEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEE
T ss_pred ceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEE
Confidence 899999997 666788888899999999999999999887765 9999999877532111 1 122477787766
Q ss_pred e
Q 001090 79 V 79 (1159)
Q Consensus 79 i 79 (1159)
+
T Consensus 238 a 238 (415)
T 2hqs_A 238 A 238 (415)
T ss_dssp E
T ss_pred E
Confidence 5
No 183
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=96.96 E-value=0.00073 Score=82.85 Aligned_cols=59 Identities=14% Similarity=0.056 Sum_probs=52.3
Q ss_pred CcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCc----------eeEEEEecCCCC
Q 001090 2 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDV----------GQLYILNTGQGE 60 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~----------G~l~Ifg~G~g~ 60 (1159)
+++.|+.|+|||+.+|++.+++.++.+.|.+++|||||++||++... ++|++|++..+.
T Consensus 395 ~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 395 VANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred EECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 56789999999999999999888888999999999999999987654 599999997765
No 184
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=96.91 E-value=0.001 Score=74.94 Aligned_cols=60 Identities=12% Similarity=-0.039 Sum_probs=54.9
Q ss_pred cccCCcEEEEEc-cCCeeeEEeecCcceeeeeeeCC---CCCEEEEecCceeEEEEecCCCCCc
Q 001090 3 AGYDGKTIVWDI-WEGIPIRIYEISRFRLVDGKFSP---DGASIILSDDVGQLYILNTGQGESQ 62 (1159)
Q Consensus 3 AG~DG~I~lWDI-~~G~~Ir~f~~g~~~i~D~~FSP---DGt~~a~tD~~G~l~Ifg~G~g~~~ 62 (1159)
.|||++|++|++ .+|+.+..+.++...+..++||| ||..||++..+|+|.||++-+|+..
T Consensus 153 ~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l 216 (356)
T 2w18_A 153 TLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLL 216 (356)
T ss_dssp SSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEE
T ss_pred cCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEE
Confidence 469999999999 55999999999999999999999 8899999999999999999888643
No 185
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=96.76 E-value=0.0014 Score=75.52 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=45.1
Q ss_pred ccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCC
Q 001090 4 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 58 (1159)
Q Consensus 4 G~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~ 58 (1159)
+.||+|+|||+.+|++.+.. .+...+.+++|||||+.||++ ..|.|+||++..
T Consensus 98 ~~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~ 150 (706)
T 2z3z_A 98 FTQGGLVGFDMLARKVTYLF-DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGK 150 (706)
T ss_dssp EETTEEEEEETTTTEEEEEE-CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBC
T ss_pred EECCEEEEEECCCCceEEcc-CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCc
Confidence 46799999999999876554 456678999999999999987 569999999987
No 186
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.75 E-value=0.0019 Score=66.31 Aligned_cols=58 Identities=12% Similarity=0.054 Sum_probs=51.2
Q ss_pred ccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCCC
Q 001090 4 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 61 (1159)
Q Consensus 4 G~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~~ 61 (1159)
+.++.|.+||+.+|+.++.+......+..++|+|||.+|++++..|.|.+|++..+..
T Consensus 161 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~ 218 (353)
T 3vgz_A 161 GKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKI 218 (353)
T ss_dssp SSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEE
T ss_pred CCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeE
Confidence 4589999999999999999885555688999999999999999999999999987753
No 187
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=96.75 E-value=0.0015 Score=64.12 Aligned_cols=58 Identities=14% Similarity=0.282 Sum_probs=49.2
Q ss_pred cccCCcEEEEEcc-CCeeeEEeecCcceeeeeeeCCCCCEEEEecCc-----------eeEEEEecCCCC
Q 001090 3 AGYDGKTIVWDIW-EGIPIRIYEISRFRLVDGKFSPDGASIILSDDV-----------GQLYILNTGQGE 60 (1159)
Q Consensus 3 AG~DG~I~lWDI~-~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~-----------G~l~Ifg~G~g~ 60 (1159)
++.||.+.||++. .|..++.+..+...+..++|||||.+||++... ++|++|++..++
T Consensus 191 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 260 (297)
T 2ojh_A 191 SSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN 260 (297)
T ss_dssp ECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred ecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence 4468999999997 777888888888899999999999999877655 679999987664
No 188
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.72 E-value=0.0023 Score=65.77 Aligned_cols=92 Identities=8% Similarity=0.052 Sum_probs=63.8
Q ss_pred CcccCCcEEEEEccCCeeeEEeecCcc---------eeeeeeeCCCCCEEEEec--CceeEEEEecCCCCCccCC-----
Q 001090 2 SAGYDGKTIVWDIWEGIPIRIYEISRF---------RLVDGKFSPDGASIILSD--DVGQLYILNTGQGESQKDA----- 65 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G~~Ir~f~~g~~---------~i~D~~FSPDGt~~a~tD--~~G~l~Ifg~G~g~~~~~~----- 65 (1159)
+++.++.|.+||+.+|+.++.+..+.+ .+.+++|||||.+|++++ ..|+|++|++..++.....
T Consensus 106 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 185 (353)
T 3vgz_A 106 GNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGK 185 (353)
T ss_dssp EETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCT
T ss_pred EecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCC
Confidence 346689999999999999999876432 378999999999888877 4899999999877532211
Q ss_pred -ccccccccCCcccee-cCCCC--ccccccCc
Q 001090 66 -KYDQFFLGDYRPLVQ-DTYGN--VLDQETQL 93 (1159)
Q Consensus 66 -p~EQFF~tDYrpLir-D~~g~--vlDe~Tq~ 93 (1159)
+....|+.|.+-|+- +.+|. ++|..|..
T Consensus 186 ~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~ 217 (353)
T 3vgz_A 186 MSTGLALDSEGKRLYTTNADGELITIDTADNK 217 (353)
T ss_dssp TCCCCEEETTTTEEEEECTTSEEEEEETTTTE
T ss_pred ccceEEECCCCCEEEEEcCCCeEEEEECCCCe
Confidence 233356666654433 33332 45555443
No 189
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=96.70 E-value=0.0015 Score=77.08 Aligned_cols=88 Identities=18% Similarity=0.137 Sum_probs=63.7
Q ss_pred CCcEEEEEccCCeeeEEeecCcce-----eeeeeeCCCCCEEEEecCc---------eeEEEEecCCCCCccCC--c-cc
Q 001090 6 DGKTIVWDIWEGIPIRIYEISRFR-----LVDGKFSPDGASIILSDDV---------GQLYILNTGQGESQKDA--K-YD 68 (1159)
Q Consensus 6 DG~I~lWDI~~G~~Ir~f~~g~~~-----i~D~~FSPDGt~~a~tD~~---------G~l~Ifg~G~g~~~~~~--p-~E 68 (1159)
||+|+|||+.+|.+..+|.++... ..+.+|||||++||++... |.++||++..++...-+ + ..
T Consensus 35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~ 114 (740)
T 4a5s_A 35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNT 114 (740)
T ss_dssp TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTE
T ss_pred CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcc
Confidence 999999999999998888876543 3456789999999988775 88899999887633222 1 22
Q ss_pred c--ccccCCcccee--cCCCCccccccCc
Q 001090 69 Q--FFLGDYRPLVQ--DTYGNVLDQETQL 93 (1159)
Q Consensus 69 Q--FF~tDYrpLir--D~~g~vlDe~Tq~ 93 (1159)
+ -|+.|.+-|.. |.+=+++|..|..
T Consensus 115 ~~~~~SPdG~~la~~~~~~i~~~~~~~~~ 143 (740)
T 4a5s_A 115 QWVTWSPVGHKLAYVWNNDIYVKIEPNLP 143 (740)
T ss_dssp EEEEECSSTTCEEEEETTEEEEESSTTSC
T ss_pred eeeEECCCCCEEEEEECCeEEEEECCCCc
Confidence 2 58899887765 3333456655544
No 190
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=96.64 E-value=0.002 Score=72.90 Aligned_cols=74 Identities=8% Similarity=-0.051 Sum_probs=52.7
Q ss_pred ccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCc----eeEEEEecCCCCCccCCc-----cccccccC
Q 001090 4 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDV----GQLYILNTGQGESQKDAK-----YDQFFLGD 74 (1159)
Q Consensus 4 G~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~----G~l~Ifg~G~g~~~~~~p-----~EQFF~tD 74 (1159)
+.++.+.|||+.+|++.++..... .+++|||||+.||++... +.|++|++..++...-+. ..--|+.|
T Consensus 129 ~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpD 205 (582)
T 3o4h_A 129 ATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPG 205 (582)
T ss_dssp ECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTT
T ss_pred cCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCC
Confidence 345556699999998877665433 899999999999976666 889999987765322111 12257888
Q ss_pred Ccccee
Q 001090 75 YRPLVQ 80 (1159)
Q Consensus 75 YrpLir 80 (1159)
.+-|..
T Consensus 206 G~~l~~ 211 (582)
T 3o4h_A 206 MKVTAG 211 (582)
T ss_dssp SCEEEE
T ss_pred CCEEEE
Confidence 876663
No 191
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=96.63 E-value=0.0016 Score=68.45 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=48.1
Q ss_pred CC--cEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 6 DG--KTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 6 DG--~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
|| +|.+||+.+|++.++..++...++.++|||||++||.+...+.|++|++..++
T Consensus 57 ~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~ 113 (388)
T 3pe7_A 57 DGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE 113 (388)
T ss_dssp TSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred CCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 56 59999999999988777776677789999999999999998999999998775
No 192
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=96.56 E-value=0.0025 Score=65.46 Aligned_cols=58 Identities=7% Similarity=0.068 Sum_probs=48.7
Q ss_pred ccCCcEEEEEccCCee-eEEeecCcceeeeeeeCCCCCEEEEecCce---eEEEEecCCCCC
Q 001090 4 GYDGKTIVWDIWEGIP-IRIYEISRFRLVDGKFSPDGASIILSDDVG---QLYILNTGQGES 61 (1159)
Q Consensus 4 G~DG~I~lWDI~~G~~-Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G---~l~Ifg~G~g~~ 61 (1159)
..|++|.+||+.+|+. ++.+..+......++|||||++|++++..| +|.+|++..++.
T Consensus 59 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~ 120 (331)
T 3u4y_A 59 DFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF 120 (331)
T ss_dssp STTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE
T ss_pred CCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe
Confidence 3488999999999998 777777776666699999999999777774 899999977653
No 193
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=96.45 E-value=0.0025 Score=64.80 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=43.7
Q ss_pred ccCCcEEEEEc---cCCeeeEEeecCcceeeeeeeCCCCCEEEEec-CceeEEEEecCC
Q 001090 4 GYDGKTIVWDI---WEGIPIRIYEISRFRLVDGKFSPDGASIILSD-DVGQLYILNTGQ 58 (1159)
Q Consensus 4 G~DG~I~lWDI---~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD-~~G~l~Ifg~G~ 58 (1159)
..||.|.+||+ .++..++.+..+ ..+.+++|||||.+|++++ ..|+|.+|++..
T Consensus 103 ~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 103 YNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp TTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence 34899999999 455566655543 4589999999999999888 899999999976
No 194
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=96.45 E-value=0.0053 Score=66.60 Aligned_cols=51 Identities=10% Similarity=0.061 Sum_probs=47.2
Q ss_pred CCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCC
Q 001090 6 DGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 59 (1159)
Q Consensus 6 DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g 59 (1159)
.++|.+||+.++++++.+..+. .+.++|||||++|+++.. |.|.||++.++
T Consensus 285 ~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 285 AAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp CSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred CceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 4589999999999999998777 999999999999999988 99999999887
No 195
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=96.38 E-value=0.0044 Score=67.24 Aligned_cols=88 Identities=13% Similarity=0.018 Sum_probs=64.8
Q ss_pred ccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecC----------ceeEEEEecCCCCCccC---------
Q 001090 4 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDD----------VGQLYILNTGQGESQKD--------- 64 (1159)
Q Consensus 4 G~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~----------~G~l~Ifg~G~g~~~~~--------- 64 (1159)
..|++|.+||..+|+.+..+..|..+ .++|||||+++.++.. .+.|.+|++.+.+....
T Consensus 28 ~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~ 105 (361)
T 2oiz_A 28 LTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ 105 (361)
T ss_dssp GGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred cccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence 45899999999999999988877666 8999999999998863 67899999987653221
Q ss_pred ---CccccccccCCccceec-CC--C--CccccccCc
Q 001090 65 ---AKYDQFFLGDYRPLVQD-TY--G--NVLDQETQL 93 (1159)
Q Consensus 65 ---~p~EQFF~tDYrpLirD-~~--g--~vlDe~Tq~ 93 (1159)
.|..-.|+.|.+-|+-- .. + .|+|..|..
T Consensus 106 ~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~ 142 (361)
T 2oiz_A 106 GLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD 142 (361)
T ss_dssp BCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE
T ss_pred cCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc
Confidence 23445688888776642 11 1 266666553
No 196
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=96.32 E-value=0.0042 Score=63.15 Aligned_cols=55 Identities=5% Similarity=-0.040 Sum_probs=42.9
Q ss_pred CcccCCcEEEEEcc--CC--eeeEEeecCcceeeeeeeCCCCCEEEEec-CceeEEEEecC
Q 001090 2 SAGYDGKTIVWDIW--EG--IPIRIYEISRFRLVDGKFSPDGASIILSD-DVGQLYILNTG 57 (1159)
Q Consensus 2 SAG~DG~I~lWDI~--~G--~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD-~~G~l~Ifg~G 57 (1159)
+++.||.|.|||+. +| +.+..+..+.. +..++|||||.+|++++ ..|.|.||.+.
T Consensus 248 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 248 CDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 45679999999999 44 45555554444 89999999999988888 67999999553
No 197
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=96.16 E-value=0.0039 Score=71.72 Aligned_cols=55 Identities=20% Similarity=0.326 Sum_probs=44.3
Q ss_pred ccCCcEEEEEccCCeeeEEeec---CcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 4 GYDGKTIVWDIWEGIPIRIYEI---SRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 4 G~DG~I~lWDI~~G~~Ir~f~~---g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+++++|.|||+.+|++ +.+.. +...+..++|||||+.||++.. +.|++|++..+.
T Consensus 88 ~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~ 145 (723)
T 1xfd_A 88 SYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ 145 (723)
T ss_dssp CCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC
T ss_pred cceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc
Confidence 4579999999999987 44443 2345899999999999998876 899999987664
No 198
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=96.16 E-value=0.005 Score=71.12 Aligned_cols=60 Identities=17% Similarity=0.085 Sum_probs=51.8
Q ss_pred CcccCCcEEEEEc--cCCeeeEEeecCcceeeeeeeCC----CCCEEEEecC-ceeEEEEecCCCCCc
Q 001090 2 SAGYDGKTIVWDI--WEGIPIRIYEISRFRLVDGKFSP----DGASIILSDD-VGQLYILNTGQGESQ 62 (1159)
Q Consensus 2 SAG~DG~I~lWDI--~~G~~Ir~f~~g~~~i~D~~FSP----DGt~~a~tD~-~G~l~Ifg~G~g~~~ 62 (1159)
+++.||+|.+||+ .+|++++.+..|. .+..++||| ||++|+++.. .|+|.||+..+++..
T Consensus 195 v~~~d~~V~v~D~~~~t~~~~~~i~~g~-~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~ 261 (543)
T 1nir_A 195 VIGRDARIDMIDLWAKEPTKVAEIKIGI-EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK 261 (543)
T ss_dssp EEETTSEEEEEETTSSSCEEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEE
T ss_pred EECCCCeEEEEECcCCCCcEEEEEecCC-CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccc
Confidence 5788999999999 8999999888544 569999999 9999999985 799999998877643
No 199
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=96.15 E-value=0.0043 Score=64.64 Aligned_cols=53 Identities=8% Similarity=0.062 Sum_probs=44.3
Q ss_pred cCCcEEEEEccCCe--eeEEeecCcceeeeeeeCCCCCEEEEec-CceeEEEEecC
Q 001090 5 YDGKTIVWDIWEGI--PIRIYEISRFRLVDGKFSPDGASIILSD-DVGQLYILNTG 57 (1159)
Q Consensus 5 ~DG~I~lWDI~~G~--~Ir~f~~g~~~i~D~~FSPDGt~~a~tD-~~G~l~Ifg~G 57 (1159)
.|+.|.+||+.+|. .+..+..+...+..++|||||++|++++ ..|.+.+|++.
T Consensus 61 ~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 61 DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp TEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence 37899999999887 4555555667788999999999998887 77999999985
No 200
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=96.11 E-value=0.0047 Score=71.42 Aligned_cols=53 Identities=19% Similarity=0.352 Sum_probs=44.6
Q ss_pred CcEEEEEccCCe--eeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 7 GKTIVWDIWEGI--PIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 7 G~I~lWDI~~G~--~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++|.|||+.+|. .++.+..+...+..++|||||++||++.. ++|++|++..+.
T Consensus 129 ~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~ 183 (741)
T 2ecf_A 129 GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGR 183 (741)
T ss_dssp TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTE
T ss_pred CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCC
Confidence 889999999994 44556667788999999999999998864 699999997765
No 201
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=96.11 E-value=0.0047 Score=72.87 Aligned_cols=52 Identities=13% Similarity=0.014 Sum_probs=44.2
Q ss_pred CcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 7 GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 7 G~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
|.+.|||+.+|++.+ +..+.+.+...+|||||+.||.+ ..+.|+|+++..+.
T Consensus 92 ~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~ 143 (740)
T 4a5s_A 92 ASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP 143 (740)
T ss_dssp EEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC
T ss_pred eEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCc
Confidence 677899999999764 55667789999999999999988 45899999987665
No 202
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=96.03 E-value=0.0071 Score=62.99 Aligned_cols=55 Identities=13% Similarity=0.073 Sum_probs=42.0
Q ss_pred CcccCCcEEEEEcc-CC--eeeEEeecCcceeeeeeeCCCCCEEEEecCc-eeEEEEec
Q 001090 2 SAGYDGKTIVWDIW-EG--IPIRIYEISRFRLVDGKFSPDGASIILSDDV-GQLYILNT 56 (1159)
Q Consensus 2 SAG~DG~I~lWDI~-~G--~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~-G~l~Ifg~ 56 (1159)
++..+++|.|||+. .| +.+..+..+...+.+++|||||++|++++.. |.+.||.+
T Consensus 257 ~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 257 SNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp EEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence 34458999999997 44 4555555555568899999999999888754 89999954
No 203
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=95.92 E-value=0.013 Score=62.63 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=45.0
Q ss_pred cCCcEEEEEcc-CCeeeEEee----cCcceeeeeeeCCCCCEEEEecC-ceeEEEEecC-CCC
Q 001090 5 YDGKTIVWDIW-EGIPIRIYE----ISRFRLVDGKFSPDGASIILSDD-VGQLYILNTG-QGE 60 (1159)
Q Consensus 5 ~DG~I~lWDI~-~G~~Ir~f~----~g~~~i~D~~FSPDGt~~a~tD~-~G~l~Ifg~G-~g~ 60 (1159)
.||+|.||++. .|+..+.+. ++...+..++|||||++|+++|. .++|++|++. .++
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~ 179 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE 179 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCC
Confidence 69999999998 687765544 24457899999999999998875 6899999987 554
No 204
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=95.88 E-value=0.0036 Score=72.40 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=43.0
Q ss_pred cCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 5 YDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 5 ~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
.|++|.|||+.+|+++..... ...+.+++|||||+.||++. .+.|++|++..+.
T Consensus 88 ~~~~i~~~d~~~g~~~~~~~l-~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~ 141 (719)
T 1z68_A 88 YTATYYIYDLSNGEFVRGNEL-PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDP 141 (719)
T ss_dssp EEEEEEEEETTTTEECCSSCC-CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSC
T ss_pred cceEEEEEECCCCccccceec-CcccccceECCCCCEEEEEE-CCeEEEEeCCCCC
Confidence 489999999999998421111 24588999999999999885 6899999998765
No 205
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=95.85 E-value=0.0064 Score=70.02 Aligned_cols=43 Identities=9% Similarity=-0.047 Sum_probs=35.3
Q ss_pred ccCCcEEEEEccC-----CeeeEEeecCcce--------------eeeeeeCCCCCEEEEec
Q 001090 4 GYDGKTIVWDIWE-----GIPIRIYEISRFR--------------LVDGKFSPDGASIILSD 46 (1159)
Q Consensus 4 G~DG~I~lWDI~~-----G~~Ir~f~~g~~~--------------i~D~~FSPDGt~~a~tD 46 (1159)
+.|++|.|||+.+ |+.+++...+... +..++|||||++||++.
T Consensus 138 ~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~ 199 (706)
T 2z3z_A 138 VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYR 199 (706)
T ss_dssp EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEE
T ss_pred EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEE
Confidence 4689999999999 9988776655443 47899999999999875
No 206
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.74 E-value=0.01 Score=62.02 Aligned_cols=56 Identities=11% Similarity=0.031 Sum_probs=43.2
Q ss_pred cCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 5 YDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 5 ~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
.+..|.+||+.+|+..++..++...+..++|||||++||.+...++|++|++..++
T Consensus 58 g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 58 GNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE 113 (396)
T ss_dssp SSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred CCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC
Confidence 34578999999998765544333333448899999999999999999999987764
No 207
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=95.73 E-value=0.011 Score=62.17 Aligned_cols=77 Identities=16% Similarity=0.222 Sum_probs=54.3
Q ss_pred cccCCcEEEEEccCCeeeEEeecCcceeeeeeeCC-CCCEEEEecC------ceeEEEEecCCCCCccCCcc-------c
Q 001090 3 AGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSP-DGASIILSDD------VGQLYILNTGQGESQKDAKY-------D 68 (1159)
Q Consensus 3 AG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSP-DGt~~a~tD~------~G~l~Ifg~G~g~~~~~~p~-------E 68 (1159)
++.++.|++||+.+|+...++ .+...+.+++||| ||+.||.+.. ..+|+++++..+.....+.. .
T Consensus 164 ~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 242 (388)
T 3pe7_A 164 TKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTH 242 (388)
T ss_dssp GCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEE
T ss_pred cCCcceEEEEECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCccccc
Confidence 456789999999999865544 4566789999999 9999987655 34899999865542211111 1
Q ss_pred cccccCCcccee
Q 001090 69 QFFLGDYRPLVQ 80 (1159)
Q Consensus 69 QFF~tDYrpLir 80 (1159)
-.|+.|.+-|+.
T Consensus 243 ~~~spdg~~l~~ 254 (388)
T 3pe7_A 243 EFWVPDGSALVY 254 (388)
T ss_dssp EEECTTSSCEEE
T ss_pred ceECCCCCEEEE
Confidence 258888876654
No 208
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=95.61 E-value=0.012 Score=61.91 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=50.6
Q ss_pred cCCcEEEEEccCCeee--EEee---cCcceeeeeeeCCCCCEEEEecC--ceeEEEEecC--CCC--CccC-----Cccc
Q 001090 5 YDGKTIVWDIWEGIPI--RIYE---ISRFRLVDGKFSPDGASIILSDD--VGQLYILNTG--QGE--SQKD-----AKYD 68 (1159)
Q Consensus 5 ~DG~I~lWDI~~G~~I--r~f~---~g~~~i~D~~FSPDGt~~a~tD~--~G~l~Ifg~G--~g~--~~~~-----~p~E 68 (1159)
.+++|.+||+.+|... ..+. .+.....+++|||||++|++++. .+.|.||++. .+. .... .|..
T Consensus 231 ~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~ 310 (361)
T 3scy_A 231 IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRN 310 (361)
T ss_dssp TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCE
T ss_pred CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCce
Confidence 6899999999999753 3332 22345689999999999977665 4899999984 232 1111 2233
Q ss_pred cccccCCcccee
Q 001090 69 QFFLGDYRPLVQ 80 (1159)
Q Consensus 69 QFF~tDYrpLir 80 (1159)
--|+.|.+-|+-
T Consensus 311 ~~~spdg~~l~~ 322 (361)
T 3scy_A 311 FIITPNGKYLLV 322 (361)
T ss_dssp EEECTTSCEEEE
T ss_pred EEECCCCCEEEE
Confidence 347777775544
No 209
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=95.52 E-value=0.012 Score=61.02 Aligned_cols=52 Identities=15% Similarity=0.253 Sum_probs=41.7
Q ss_pred ccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecC-----ceeEEEEecCCCC
Q 001090 4 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDD-----VGQLYILNTGQGE 60 (1159)
Q Consensus 4 G~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~-----~G~l~Ifg~G~g~ 60 (1159)
+++++|.+||+.+|...++ ..+...+|||||++||.+.. ..+|+++++..++
T Consensus 40 ~~~~~l~~~d~~~~~~~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~ 96 (347)
T 2gop_A 40 KYENTIVIENLKNNARRFI-----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLS 96 (347)
T ss_dssp EEEEEEEEEETTTCCEEEE-----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTE
T ss_pred CccceEEEEeCCCCceEEc-----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCc
Confidence 5688999999999986544 56888999999999997654 3469999987665
No 210
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=95.33 E-value=0.022 Score=58.92 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=31.3
Q ss_pred cEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEec
Q 001090 8 KTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSD 46 (1159)
Q Consensus 8 ~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD 46 (1159)
+|.+||+.+|+..+++..+. +..++|||||+.||.+.
T Consensus 86 ~l~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~ 122 (347)
T 2gop_A 86 EIWVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVG 122 (347)
T ss_dssp EEEEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEE
T ss_pred eEEEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEE
Confidence 58899999999887776544 99999999999999764
No 211
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=95.29 E-value=0.038 Score=56.64 Aligned_cols=57 Identities=16% Similarity=0.062 Sum_probs=48.8
Q ss_pred CcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 2 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++..+|.|.+||..+| ++.|......+..++|+|||..+|++...+.|.+|+...+.
T Consensus 45 ~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~ 101 (296)
T 3e5z_A 45 SDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGE 101 (296)
T ss_dssp EEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCC
T ss_pred EeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCc
Confidence 4567899999999998 77888777789999999999999888888999999975554
No 212
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=95.27 E-value=0.023 Score=59.75 Aligned_cols=57 Identities=7% Similarity=0.029 Sum_probs=48.1
Q ss_pred CCcccCCcEEEEEccCCeeeEEeecCc-ceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 1 MSAGYDGKTIVWDIWEGIPIRIYEISR-FRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 1 lSAG~DG~I~lWDI~~G~~Ir~f~~g~-~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++++.|+.|.+||..+|+.+..|..+. ..+.+++++|||+.|++. .+.|+.|+. .|+
T Consensus 9 v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs~--~~~V~~~d~-~G~ 66 (276)
T 3no2_A 9 VGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSY--SKGAKMITR-DGR 66 (276)
T ss_dssp EECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEEC--BSEEEEECT-TSC
T ss_pred EeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEeC--CCCEEEECC-CCC
Confidence 367899999999999999999998765 578999999999999943 466888887 555
No 213
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=95.20 E-value=0.033 Score=57.63 Aligned_cols=59 Identities=10% Similarity=0.049 Sum_probs=48.5
Q ss_pred CcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCc----eeEEEEecCCCC
Q 001090 2 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDV----GQLYILNTGQGE 60 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~----G~l~Ifg~G~g~ 60 (1159)
++..+|.|.+||..+|+..+.+......+..++|+|||..++++... +.|++|+...+.
T Consensus 61 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~ 123 (333)
T 2dg1_A 61 LDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN 123 (333)
T ss_dssp EETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred EECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE
Confidence 45678999999999998877665566789999999999988887766 789999876553
No 214
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=95.20 E-value=0.016 Score=71.19 Aligned_cols=76 Identities=11% Similarity=0.111 Sum_probs=55.8
Q ss_pred ccCCcEE-EEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCCCccCC-----c-cccccccCCc
Q 001090 4 GYDGKTI-VWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDA-----K-YDQFFLGDYR 76 (1159)
Q Consensus 4 G~DG~I~-lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~~~~~~-----p-~EQFF~tDYr 76 (1159)
+.++.|. +||+.+|++.... ++...+..++|||||++||++...|.|++|++..++..... + ..--|+.|.+
T Consensus 355 s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~ 433 (1045)
T 1k32_A 355 TREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR 433 (1045)
T ss_dssp ETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSC
T ss_pred ECCCceEEEEECCCCCceEec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCC
Confidence 3466788 8999988765544 66788999999999999999999999999999776532211 1 1224666766
Q ss_pred ccee
Q 001090 77 PLVQ 80 (1159)
Q Consensus 77 pLir 80 (1159)
-|+.
T Consensus 434 ~la~ 437 (1045)
T 1k32_A 434 FIAY 437 (1045)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 5544
No 215
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=95.05 E-value=0.029 Score=64.09 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=42.8
Q ss_pred CcEEEEEcc-CC---eeeEEeecCcceeeeeeeCCCCCEEEEecCce--eEEEEecCCCC
Q 001090 7 GKTIVWDIW-EG---IPIRIYEISRFRLVDGKFSPDGASIILSDDVG--QLYILNTGQGE 60 (1159)
Q Consensus 7 G~I~lWDI~-~G---~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G--~l~Ifg~G~g~ 60 (1159)
..|.|||+. +| .+.++..++...+...+|||||+.+++++..| +|+++++..+.
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~ 276 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA 276 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC
T ss_pred cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc
Confidence 479999999 68 55555555568899999999999888888888 88888875443
No 216
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=95.05 E-value=0.014 Score=68.31 Aligned_cols=59 Identities=15% Similarity=0.081 Sum_probs=43.8
Q ss_pred CcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCcee-------------EEEEecCCCC
Q 001090 2 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQ-------------LYILNTGQGE 60 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~-------------l~Ifg~G~g~ 60 (1159)
+|+.+.+|+|||+.+|+.++.-.........++|||||+.|+.+..++. |+++.+|++.
T Consensus 142 ~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~ 213 (695)
T 2bkl_A 142 NAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEP 213 (695)
T ss_dssp TTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCG
T ss_pred CCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCc
Confidence 4556789999999999975211112223378999999999998877654 9999998875
No 217
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=95.02 E-value=0.03 Score=65.85 Aligned_cols=58 Identities=9% Similarity=0.065 Sum_probs=49.3
Q ss_pred CcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecC--CCC
Q 001090 2 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG--QGE 60 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G--~g~ 60 (1159)
+...||+|.|||..+|+.+..+..|. .+..++|||||+++.+++.+|.|++|++- +++
T Consensus 172 ~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~ 231 (567)
T 1qks_A 172 TLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT 231 (567)
T ss_dssp EETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC
T ss_pred EeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCc
Confidence 34568999999999999999887664 35588999999999999999999999984 544
No 218
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=94.92 E-value=0.046 Score=57.73 Aligned_cols=56 Identities=14% Similarity=0.046 Sum_probs=47.2
Q ss_pred CcccCCcEEEEEccCCeeeEEee---cCcceeeeeeeCCCCCEEEEecCceeEEEEecC
Q 001090 2 SAGYDGKTIVWDIWEGIPIRIYE---ISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 57 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G~~Ir~f~---~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G 57 (1159)
+...+++|++||+.+|+.+..|. ++-....+++|+|||..+|+....++|.+|.+.
T Consensus 263 ~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 263 GDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp TCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred ccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 34556799999999999999985 345568999999999888888889999999874
No 219
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=94.77 E-value=0.04 Score=57.81 Aligned_cols=51 Identities=10% Similarity=0.199 Sum_probs=39.3
Q ss_pred CCcEEEEEcc--CCe--eeEEeecCcceeeeeeeCCCCCEEEEec-CceeEEEEecC
Q 001090 6 DGKTIVWDIW--EGI--PIRIYEISRFRLVDGKFSPDGASIILSD-DVGQLYILNTG 57 (1159)
Q Consensus 6 DG~I~lWDI~--~G~--~Ir~f~~g~~~i~D~~FSPDGt~~a~tD-~~G~l~Ifg~G 57 (1159)
+++|.|||+. +|. .+..+.. ...+.+++|||||++|++++ ..|.|.||.+.
T Consensus 281 ~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 281 ADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp SCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 5899999995 677 4444444 45678999999999998887 67899996543
No 220
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=94.58 E-value=0.036 Score=64.93 Aligned_cols=52 Identities=13% Similarity=0.120 Sum_probs=41.2
Q ss_pred cEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCcee----------------EEEEecCCCC
Q 001090 8 KTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQ----------------LYILNTGQGE 60 (1159)
Q Consensus 8 ~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~----------------l~Ifg~G~g~ 60 (1159)
+|+|||+.+|+.+.... ....+..++|||||+.|+.+...+. |+++.+|++.
T Consensus 152 ~i~v~d~~tg~~~~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~ 219 (710)
T 2xdw_A 152 TIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQ 219 (710)
T ss_dssp EEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCG
T ss_pred EEEEEECCCCCCCcccc-cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCc
Confidence 89999999999887533 2334778999999999997766554 8888888764
No 221
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=94.43 E-value=0.075 Score=58.62 Aligned_cols=84 Identities=7% Similarity=-0.057 Sum_probs=63.7
Q ss_pred cEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecC----------ceeEEEEecCCCCCcc-------------C
Q 001090 8 KTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDD----------VGQLYILNTGQGESQK-------------D 64 (1159)
Q Consensus 8 ~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~----------~G~l~Ifg~G~g~~~~-------------~ 64 (1159)
+|.+||..+|+.+..+..|..+ .++|||||+++.+++. .+.|.+|++.+.+... .
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~ 125 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP 125 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCC
Confidence 8999999999999888877666 9999999999999873 5789999997754222 1
Q ss_pred CccccccccCCcccee-cC--C--CCccccccCcC
Q 001090 65 AKYDQFFLGDYRPLVQ-DT--Y--GNVLDQETQLA 94 (1159)
Q Consensus 65 ~p~EQFF~tDYrpLir-D~--~--g~vlDe~Tq~~ 94 (1159)
.|....|+.|.+-|+- .. . -.||| +|...
T Consensus 126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~ 159 (373)
T 2mad_H 126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS 159 (373)
T ss_pred CccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE
Confidence 2444578889987774 21 1 25888 87654
No 222
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=94.09 E-value=0.052 Score=55.06 Aligned_cols=54 Identities=19% Similarity=0.225 Sum_probs=41.9
Q ss_pred cccCC-cEEEEEccCCeeeEEeecCc--ceeeeeeeCCCCCEEEEecCceeEEEEecCC
Q 001090 3 AGYDG-KTIVWDIWEGIPIRIYEISR--FRLVDGKFSPDGASIILSDDVGQLYILNTGQ 58 (1159)
Q Consensus 3 AG~DG-~I~lWDI~~G~~Ir~f~~g~--~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~ 58 (1159)
...++ .|.+||. +|..++.|..+. ..+.+++|+|||+.+++ +..++|.||.+-.
T Consensus 224 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 224 DNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp ECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred eCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 34454 9999994 788888887542 34789999999987776 6789999998643
No 223
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=93.64 E-value=0.041 Score=60.04 Aligned_cols=58 Identities=14% Similarity=0.119 Sum_probs=42.5
Q ss_pred CcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCCC
Q 001090 2 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 61 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~~ 61 (1159)
+++.||.|+.||..+|+++-.|.. +.+....+.+||+.++++..+|+|+.|+..+|+.
T Consensus 14 ~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~ 71 (369)
T 2hz6_A 14 VSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG 71 (369)
T ss_dssp EEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC
T ss_pred EEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce
Confidence 578899999999999999998887 5677888899999999989999999999866653
No 224
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=93.59 E-value=0.21 Score=52.80 Aligned_cols=53 Identities=11% Similarity=0.085 Sum_probs=44.8
Q ss_pred CCcEEEEEccCCeeeEEeecCc-ceeeeeeeCCCCCEEEEecCceeEEEEecCC
Q 001090 6 DGKTIVWDIWEGIPIRIYEISR-FRLVDGKFSPDGASIILSDDVGQLYILNTGQ 58 (1159)
Q Consensus 6 DG~I~lWDI~~G~~Ir~f~~g~-~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~ 58 (1159)
+|+|.+||..+|+.++.+..+. ....+++|+|||..+++....++|.+|+...
T Consensus 68 ~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g 121 (329)
T 3fvz_A 68 EDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHS 121 (329)
T ss_dssp SCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTC
T ss_pred CCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCC
Confidence 4689999999999998887544 5688999999999888777789999999743
No 225
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=93.56 E-value=0.07 Score=61.02 Aligned_cols=88 Identities=13% Similarity=0.047 Sum_probs=69.2
Q ss_pred CcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEec----------CceeEEEEecCCCCCccC------------
Q 001090 7 GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSD----------DVGQLYILNTGQGESQKD------------ 64 (1159)
Q Consensus 7 G~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD----------~~G~l~Ifg~G~g~~~~~------------ 64 (1159)
++|.+.|+.+++.+..+..|..+ .++|||||++|.+++ ..+.|++||+.+.+..+.
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g 176 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG 176 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence 79999999999999999877766 899999999999887 468999999988764322
Q ss_pred -CccccccccCCcccee-cC--CC--CccccccCcCCc
Q 001090 65 -AKYDQFFLGDYRPLVQ-DT--YG--NVLDQETQLAPH 96 (1159)
Q Consensus 65 -~p~EQFF~tDYrpLir-D~--~g--~vlDe~Tq~~PH 96 (1159)
.|....|+.|.+-|+- .. .+ .|||..|...-.
T Consensus 177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~ 214 (426)
T 3c75_H 177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDR 214 (426)
T ss_dssp CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEE
Confidence 2445689999987775 32 22 499998876533
No 226
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=93.53 E-value=0.16 Score=53.93 Aligned_cols=89 Identities=11% Similarity=0.020 Sum_probs=63.3
Q ss_pred cCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCc----------eeEEEEecCCCCCccC-------Ccc
Q 001090 5 YDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDV----------GQLYILNTGQGESQKD-------AKY 67 (1159)
Q Consensus 5 ~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~----------G~l~Ifg~G~g~~~~~-------~p~ 67 (1159)
.+++|.+||+.+|+.++.+..+. ...+++|+|||+.++++... +.|++|+..+++..+. .|.
T Consensus 150 ~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~ 228 (328)
T 3dsm_A 150 YQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPS 228 (328)
T ss_dssp TCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCE
T ss_pred CCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCce
Confidence 68999999999999999887543 35689999999988887765 8999999877652211 244
Q ss_pred ccccccCCcccee-cCCCCccccccCcC
Q 001090 68 DQFFLGDYRPLVQ-DTYGNVLDQETQLA 94 (1159)
Q Consensus 68 EQFF~tDYrpLir-D~~g~vlDe~Tq~~ 94 (1159)
.-.|..|-+-|.- +..=+++|..|...
T Consensus 229 ~la~~~d~~~lyv~~~~v~~~d~~t~~~ 256 (328)
T 3dsm_A 229 EVQLNGTRDTLYWINNDIWRMPVEADRV 256 (328)
T ss_dssp EEEECTTSCEEEEESSSEEEEETTCSSC
T ss_pred eEEEecCCCEEEEEccEEEEEECCCCce
Confidence 4466766554433 33344677766553
No 227
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=93.49 E-value=0.11 Score=52.74 Aligned_cols=54 Identities=9% Similarity=0.056 Sum_probs=45.6
Q ss_pred cCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCC-EEEEecCceeEEEEecCC
Q 001090 5 YDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGA-SIILSDDVGQLYILNTGQ 58 (1159)
Q Consensus 5 ~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt-~~a~tD~~G~l~Ifg~G~ 58 (1159)
.++.|.+||..+|+.++.+..+...+..++|+|||. .++++...|.|+.|++..
T Consensus 245 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 245 GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 478899999999999888877667899999999999 555666779999999865
No 228
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=93.36 E-value=0.041 Score=62.89 Aligned_cols=52 Identities=13% Similarity=0.021 Sum_probs=41.5
Q ss_pred CcEEEEEccC------CeeeEEee-cCcceeeeeeeCCCCCEEEEecCc--------eeEEEEecC-CC
Q 001090 7 GKTIVWDIWE------GIPIRIYE-ISRFRLVDGKFSPDGASIILSDDV--------GQLYILNTG-QG 59 (1159)
Q Consensus 7 G~I~lWDI~~------G~~Ir~f~-~g~~~i~D~~FSPDGt~~a~tD~~--------G~l~Ifg~G-~g 59 (1159)
.+|++||+.+ |.+ +.+. .++..+..++|||||++||.+... ..|++|++. .+
T Consensus 161 ~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g 228 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDG 228 (662)
T ss_dssp EEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTS
T ss_pred eEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCC
Confidence 5899999998 665 4455 667789999999999999866532 589999997 45
No 229
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=93.04 E-value=0.13 Score=58.33 Aligned_cols=90 Identities=14% Similarity=0.039 Sum_probs=68.9
Q ss_pred CCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEec----------CceeEEEEecCCCCCccC-----------
Q 001090 6 DGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSD----------DVGQLYILNTGQGESQKD----------- 64 (1159)
Q Consensus 6 DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD----------~~G~l~Ifg~G~g~~~~~----------- 64 (1159)
+++|.+.|..+++.+..+..|..+ . ++|||||+++.+++ ..+.|++|++.+.+....
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~ 135 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV 135 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred CCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccccc
Confidence 789999999999999999877766 3 99999999998876 367899999988763322
Q ss_pred --CccccccccCCcccee-cCC--C--CccccccCcCCcc
Q 001090 65 --AKYDQFFLGDYRPLVQ-DTY--G--NVLDQETQLAPHR 97 (1159)
Q Consensus 65 --~p~EQFF~tDYrpLir-D~~--g--~vlDe~Tq~~PHL 97 (1159)
.|....|+.|.+-|+- ... + .|||.+|...-..
T Consensus 136 g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~t 175 (386)
T 3sjl_D 136 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM 175 (386)
T ss_dssp SCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred CCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 2444579999987664 322 2 2899998875444
No 230
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=92.73 E-value=0.072 Score=60.29 Aligned_cols=53 Identities=6% Similarity=-0.084 Sum_probs=39.5
Q ss_pred CcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 2 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
.+..||+|.+||+.+|..+. ....|.+++|||+| +++|-.+|++.+|....++
T Consensus 141 v~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~ 193 (388)
T 1xip_A 141 ILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGE 193 (388)
T ss_dssp EEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTE
T ss_pred EEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCcc
Confidence 45789999999999998764 23479999999999 4555555777777554443
No 231
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.65 E-value=0.11 Score=54.23 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=40.3
Q ss_pred CcEEEEEccCCeeeEEeecC-cceeeeeeeCCCCCEEEEecCc-----eeEEEEecCCCC
Q 001090 7 GKTIVWDIWEGIPIRIYEIS-RFRLVDGKFSPDGASIILSDDV-----GQLYILNTGQGE 60 (1159)
Q Consensus 7 G~I~lWDI~~G~~Ir~f~~g-~~~i~D~~FSPDGt~~a~tD~~-----G~l~Ifg~G~g~ 60 (1159)
..|.+||+.+|....++... ...+..++|||||+.||.+... ++|++|++..+.
T Consensus 216 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~ 275 (396)
T 3c5m_A 216 ARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE 275 (396)
T ss_dssp CCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC
T ss_pred ceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC
Confidence 67999999877654444432 3468889999999998876443 669999987764
No 232
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=92.56 E-value=0.13 Score=54.55 Aligned_cols=56 Identities=13% Similarity=-0.067 Sum_probs=45.7
Q ss_pred cccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEec-CceeEEEEecCCCC
Q 001090 3 AGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSD-DVGQLYILNTGQGE 60 (1159)
Q Consensus 3 AG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD-~~G~l~Ifg~G~g~ 60 (1159)
+..+|.|.+||..+|+.++.+.. ......++|+|||+ |.+++ ..|.|++|++.++.
T Consensus 60 ~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~ 116 (328)
T 3dsm_A 60 VNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYE 116 (328)
T ss_dssp EGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTE
T ss_pred EcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCe
Confidence 34579999999999999998853 35678899999995 55555 78999999987765
No 233
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=92.28 E-value=0.19 Score=52.90 Aligned_cols=58 Identities=12% Similarity=0.032 Sum_probs=49.4
Q ss_pred CcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCCC
Q 001090 2 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 61 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~~ 61 (1159)
+...+|.|.+||.. |+.+..|..+ ...+...+.|+|..++++...++|..|+..+|+.
T Consensus 141 ~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 141 PLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp EETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred EecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence 45578999999998 9999999865 4567789999999999988889999999887764
No 234
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=92.26 E-value=0.15 Score=56.98 Aligned_cols=82 Identities=7% Similarity=-0.162 Sum_probs=64.5
Q ss_pred cEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEec----------CceeEEEEecCCCCCccC-------------
Q 001090 8 KTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSD----------DVGQLYILNTGQGESQKD------------- 64 (1159)
Q Consensus 8 ~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD----------~~G~l~Ifg~G~g~~~~~------------- 64 (1159)
+|-+.|..+++.+..+..|..+ -++|||||+++.+++ ..+.|.+||+.+++....
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999999877666 799999999999987 378999999988763332
Q ss_pred CccccccccCCcccee-cCC-CC---c--ccccc
Q 001090 65 AKYDQFFLGDYRPLVQ-DTY-GN---V--LDQET 91 (1159)
Q Consensus 65 ~p~EQFF~tDYrpLir-D~~-g~---v--lDe~T 91 (1159)
.|....|+.|.+.|+- ... +. | ||..|
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 2445579999987775 221 22 5 89888
No 235
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=92.06 E-value=0.15 Score=54.44 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=40.7
Q ss_pred CcEEEEEcc-CCeeeEEe--e-cCcceeeeeeeCC---CCCEEEEecCc-eeEEEEecCCC
Q 001090 7 GKTIVWDIW-EGIPIRIY--E-ISRFRLVDGKFSP---DGASIILSDDV-GQLYILNTGQG 59 (1159)
Q Consensus 7 G~I~lWDI~-~G~~Ir~f--~-~g~~~i~D~~FSP---DGt~~a~tD~~-G~l~Ifg~G~g 59 (1159)
|+|.|||+. +|+..++. . .....+..++||| ||++|++++.. |.|.||.+...
T Consensus 282 ~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 282 GYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 389999996 78865532 2 3344577899999 89999999864 99999987544
No 236
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=92.01 E-value=0.27 Score=54.20 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=48.4
Q ss_pred CCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCC-EEEEec-CceeEEEEecCCCCCccC
Q 001090 6 DGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGA-SIILSD-DVGQLYILNTGQGESQKD 64 (1159)
Q Consensus 6 DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt-~~a~tD-~~G~l~Ifg~G~g~~~~~ 64 (1159)
++.|.+.|+.+++.++.+..+. ..+.++|||||+ .+.++. ..|.|++|++.+++..+.
T Consensus 297 ~~~V~VID~~t~~vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 297 AKEVTSVTGLVGQTSSQISLGH-DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CCeEEEEECCCCEEEEEEECCC-CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 4689999999999999987554 588999999999 777777 589999999988774443
No 237
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=91.88 E-value=0.36 Score=49.87 Aligned_cols=56 Identities=14% Similarity=0.133 Sum_probs=47.0
Q ss_pred CcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 2 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
+.+.++.+.+| .|..+..+..+...+.+++|+|||+.++++...|.|++|+...+.
T Consensus 22 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~ 77 (333)
T 2dg1_A 22 PIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE 77 (333)
T ss_dssp CCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred EEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc
Confidence 34678889999 688888888887788999999999988888888999999986654
No 238
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=91.05 E-value=0.33 Score=49.16 Aligned_cols=53 Identities=15% Similarity=0.141 Sum_probs=42.7
Q ss_pred cccCCcEEEEEccCCeeeEEeecC--cceeeeeeeCCCCCEEEEecCce-eEEEEec
Q 001090 3 AGYDGKTIVWDIWEGIPIRIYEIS--RFRLVDGKFSPDGASIILSDDVG-QLYILNT 56 (1159)
Q Consensus 3 AG~DG~I~lWDI~~G~~Ir~f~~g--~~~i~D~~FSPDGt~~a~tD~~G-~l~Ifg~ 56 (1159)
...++.|.+||. +|..++.|... -..+..++|+|||..++++...+ .|.+|+.
T Consensus 181 ~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 181 DNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ 236 (286)
T ss_dssp EGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred ECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence 355889999997 78888887643 35688999999999888887775 9999985
No 239
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=90.68 E-value=0.24 Score=58.30 Aligned_cols=60 Identities=23% Similarity=0.207 Sum_probs=49.7
Q ss_pred cccCCcEEEEEcc--CCeeeEEeecCcceeeeeeeC----CCCCEEEEecCc-eeEEEEecCCCCCcc
Q 001090 3 AGYDGKTIVWDIW--EGIPIRIYEISRFRLVDGKFS----PDGASIILSDDV-GQLYILNTGQGESQK 63 (1159)
Q Consensus 3 AG~DG~I~lWDI~--~G~~Ir~f~~g~~~i~D~~FS----PDGt~~a~tD~~-G~l~Ifg~G~g~~~~ 63 (1159)
++.||.|.+||++ +++.++.+..|.. ...++|| |||+++++++.. |++.||+.++.+..+
T Consensus 214 ~~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~ 280 (567)
T 1qks_A 214 IGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK 280 (567)
T ss_dssp EETTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE
T ss_pred EcCCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEE
Confidence 5679999999997 9999988876654 4689999 799999988776 999999987766443
No 240
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=90.63 E-value=0.4 Score=51.14 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=40.9
Q ss_pred cCCcEEEEEccCCeeeEEeecCc-----------------------------ceeeeeeeCCCCCEEEEecCce-eEEEE
Q 001090 5 YDGKTIVWDIWEGIPIRIYEISR-----------------------------FRLVDGKFSPDGASIILSDDVG-QLYIL 54 (1159)
Q Consensus 5 ~DG~I~lWDI~~G~~Ir~f~~g~-----------------------------~~i~D~~FSPDGt~~a~tD~~G-~l~If 54 (1159)
.++.|++||+.+|+..+++.++. ..+..++|||||..|.+++..| +|+.+
T Consensus 143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~ 222 (343)
T 2qe8_A 143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRI 222 (343)
T ss_dssp GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEE
T ss_pred CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEE
Confidence 67899999999999888775421 1256789999999888888777 77777
Q ss_pred ec
Q 001090 55 NT 56 (1159)
Q Consensus 55 g~ 56 (1159)
++
T Consensus 223 ~~ 224 (343)
T 2qe8_A 223 KS 224 (343)
T ss_dssp EH
T ss_pred EH
Confidence 65
No 241
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=90.58 E-value=0.22 Score=58.35 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=40.3
Q ss_pred cEEEEEccCCe--eeEEeec--CcceeeeeeeCCCCCEEEEecCce----eEEEEecCCC
Q 001090 8 KTIVWDIWEGI--PIRIYEI--SRFRLVDGKFSPDGASIILSDDVG----QLYILNTGQG 59 (1159)
Q Consensus 8 ~I~lWDI~~G~--~Ir~f~~--g~~~i~D~~FSPDGt~~a~tD~~G----~l~Ifg~G~g 59 (1159)
+|.+||+.+|. ...+|.. +...+..+.|||||++||.+...+ .|++++.+.+
T Consensus 203 ~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~ 262 (695)
T 2bkl_A 203 TIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK 262 (695)
T ss_dssp EEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS
T ss_pred EEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC
Confidence 49999999998 3445654 456789999999999999766555 8888876544
No 242
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=90.28 E-value=0.47 Score=42.27 Aligned_cols=54 Identities=13% Similarity=0.293 Sum_probs=40.8
Q ss_pred hccCCCCCCeEEEeeccCCCCCCcEEEEEEEEecCCCCCCCCCCcceeEEEEcCCCCcccccCCCccccC
Q 001090 964 IQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDS 1033 (1159)
Q Consensus 964 m~rnWsvGDRFrm~fe~ED~idg~Ww~GtIvgv~p~dp~wPdSpWe~L~VrWDn~~~E~eRVSPWEIEpi 1033 (1159)
|-..|++|++|..+| .+++||.|+|+++... ..|.|+++++ ..+.|.+=+|-|.
T Consensus 3 ~~~~~~vGd~vmArW-----~D~~yYpA~I~si~~~---------~~Y~V~F~dG--~~etvk~~~ikp~ 56 (67)
T 3p8d_A 3 MSSEFQINEQVLACW-----SDCRFYPAKVTAVNKD---------GTYTVKFYDG--VVQTVKHIHVKAF 56 (67)
T ss_dssp --CCCCTTCEEEEEC-----TTSCEEEEEEEEECTT---------SEEEEEETTS--CEEEEEGGGEEEC
T ss_pred cCcccccCCEEEEEc-----CCCCEeeEEEEEECCC---------CeEEEEEeCC--ceEEEeHHHcccC
Confidence 445899999999999 2689999999999862 4699999985 4555555555543
No 243
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=89.06 E-value=0.12 Score=56.41 Aligned_cols=57 Identities=14% Similarity=0.101 Sum_probs=31.1
Q ss_pred CcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCCCc
Q 001090 2 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ 62 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~~~ 62 (1159)
.++.||+|+.||..+|+++-.|..+. ...++|+|..|+++..+|.|+.|+..+|+..
T Consensus 97 ~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 97 MGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp CCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred EEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 57789999999999999998887654 2467899999999999999999999887643
No 244
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=88.67 E-value=0.76 Score=46.98 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=42.3
Q ss_pred CCcEEEEEccCCeeeEEeecCcceeeeeee-CCCCCEEEEecCceeEEEEecCCCC
Q 001090 6 DGKTIVWDIWEGIPIRIYEISRFRLVDGKF-SPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 6 DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~F-SPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++.|.+||.. |+.++.|..+.. +..++| +|||..|.++... .|+-|.+....
T Consensus 236 ~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~ 288 (296)
T 3e5z_A 236 GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRG 288 (296)
T ss_dssp TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCB
T ss_pred CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccc
Confidence 7889999986 999988887766 899999 6999988887764 67778776554
No 245
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=88.46 E-value=1 Score=50.09 Aligned_cols=55 Identities=9% Similarity=-0.008 Sum_probs=43.5
Q ss_pred ccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCce--eEEEEecCCCC
Q 001090 4 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVG--QLYILNTGQGE 60 (1159)
Q Consensus 4 G~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G--~l~Ifg~G~g~ 60 (1159)
..++.|++||+.+|....++..+... . ++|+|||..|.++|..| .|++|+...+.
T Consensus 149 ~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 149 RDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp TTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred cCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence 45688999999999887766654333 3 99999999999999877 89999876543
No 246
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=88.39 E-value=0.7 Score=42.92 Aligned_cols=53 Identities=13% Similarity=0.283 Sum_probs=40.8
Q ss_pred ccCCCCCCeEEEeeccCCCCCCcEEEEEEEEecCCCCCCCCCCcceeEEEEcCCCCcccccCCCccccC
Q 001090 965 QRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDS 1033 (1159)
Q Consensus 965 ~rnWsvGDRFrm~fe~ED~idg~Ww~GtIvgv~p~dp~wPdSpWe~L~VrWDn~~~E~eRVSPWEIEpi 1033 (1159)
...|++|++|...| .+++||-|+|++|... ..|+|+++++ ..+.|.+=+|-|+
T Consensus 19 ~~~f~vGd~VlArW-----~D~~yYPAkI~sV~~~---------~~YtV~F~DG--~~etvk~~~IKp~ 71 (85)
T 3qii_A 19 SSEFQINEQVLACW-----SDCRFYPAKVTAVNKD---------GTYTVKFYDG--VVQTVKHIHVKAF 71 (85)
T ss_dssp --CCCTTCEEEEEC-----TTSCEEEEEEEEECTT---------SEEEEEETTS--CEEEEEGGGEEEC
T ss_pred CcccccCCEEEEEe-----CCCCEeeEEEEEECCC---------CeEEEEEeCC--CeEEecHHHcccC
Confidence 45899999999999 2689999999999862 3699999985 5566666566554
No 247
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=88.05 E-value=1.1 Score=46.71 Aligned_cols=53 Identities=4% Similarity=0.009 Sum_probs=42.5
Q ss_pred cccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecC
Q 001090 3 AGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 57 (1159)
Q Consensus 3 AG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G 57 (1159)
+..+|.|..||. +|. ++.|......+..++|+|||+.+++....+.|.+|+..
T Consensus 63 d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 63 DLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp ETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred ECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence 446788999988 565 45676666778899999999988888777899999874
No 248
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=87.82 E-value=0.45 Score=53.24 Aligned_cols=58 Identities=16% Similarity=-0.001 Sum_probs=46.3
Q ss_pred CcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCE-EEEec-CceeEEEEecCCCCCccCC
Q 001090 7 GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGAS-IILSD-DVGQLYILNTGQGESQKDA 65 (1159)
Q Consensus 7 G~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~-~a~tD-~~G~l~Ifg~G~g~~~~~~ 65 (1159)
+.+.+||+.+++.++.+..|. ....++|+|||++ +++.. ..|+|.++|+.+++..+..
T Consensus 294 ~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I 353 (368)
T 1mda_H 294 ENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353 (368)
T ss_dssp EEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred CCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEE
Confidence 456699999999999887655 6889999999985 55555 5899999999887744443
No 249
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=87.67 E-value=0.68 Score=48.20 Aligned_cols=51 Identities=14% Similarity=0.004 Sum_probs=39.1
Q ss_pred CcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCc------eeEEEEecCCC
Q 001090 7 GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDV------GQLYILNTGQG 59 (1159)
Q Consensus 7 G~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~------G~l~Ifg~G~g 59 (1159)
+.|..||..+|+...+. +......++|||||..|.++|.. ++|++|++..+
T Consensus 169 ~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~ 225 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG 225 (305)
T ss_dssp EEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred CeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence 56888888888765544 33445678999999999888876 79999998643
No 250
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=87.65 E-value=1 Score=37.42 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=33.0
Q ss_pred CCCCCCeEEEeeccCCCCCCcEEEEEEEEecCCCCCCCCCCcceeEEEEcCCCCcccccC
Q 001090 967 NWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHS 1026 (1159)
Q Consensus 967 nWsvGDRFrm~fe~ED~idg~Ww~GtIvgv~p~dp~wPdSpWe~L~VrWDn~~~E~eRVS 1026 (1159)
.|++|+.|...|. .++.||.++|+++.... ..+.|.+.+=+ ..+.|.
T Consensus 1 ~wk~G~~c~A~~s----~Dg~wYrA~I~~i~~~~--------~~~~V~fvDYG-n~e~v~ 47 (54)
T 3s6w_A 1 MWKPGDECFALYW----EDNKFYRAEVEALHSSG--------MTAVVKFIDYG-NYEEVL 47 (54)
T ss_dssp CCCTTCEEEEEET----TTTEEEEEEEEEC--CC--------SEEEEEETTTC-CEEEEE
T ss_pred CCCCCCEEEEEEC----CCCCEEEEEEEEEeCCC--------CEEEEEEEccC-CeEEEe
Confidence 5999999999993 36799999999987421 45678886643 334443
No 251
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=87.40 E-value=1.1 Score=38.84 Aligned_cols=55 Identities=16% Similarity=0.447 Sum_probs=39.2
Q ss_pred ccCCCCCCeEEEeeccCCCCCCcEEEEEEEEecCCCCCCCCCCcceeEEEEcCCCCcccccCCCcccc
Q 001090 965 QRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFD 1032 (1159)
Q Consensus 965 ~rnWsvGDRFrm~fe~ED~idg~Ww~GtIvgv~p~dp~wPdSpWe~L~VrWDn~~~E~eRVSPWEIEp 1032 (1159)
...|++||.|...|. .++.||.++|+++.... ..+.|.+.+=+ ..+.|..=+|-|
T Consensus 6 ~~~~~vGd~c~A~~s----~Dg~wYrA~I~~v~~~~--------~~~~V~fvdYG-n~e~V~~~~Lrp 60 (64)
T 4a4f_A 6 THSWKVGDKCMAVWS----EDGQCYEAEIEEIDEEN--------GTAAITFAGYG-NAEVTPLLNLKP 60 (64)
T ss_dssp SSCCCTTCEEEEECT----TTSSEEEEEEEEEETTT--------TEEEEEETTTT-EEEEEEGGGEEC
T ss_pred CCCCCCCCEEEEEEC----CCCCEEEEEEEEEcCCC--------CEEEEEEEecC-CEEEEeHHHcEe
Confidence 458999999999993 36799999999998521 25789987653 445554444443
No 252
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=87.36 E-value=0.96 Score=44.96 Aligned_cols=54 Identities=7% Similarity=0.018 Sum_probs=41.0
Q ss_pred CCcEEEEEccCCeeeEEee-cCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 6 DGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 6 DG~I~lWDI~~G~~Ir~f~-~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++.|.+||...+.. ..+. .+...+.+++|+|||..+++....|.|++|+.|...
T Consensus 86 ~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~ 140 (270)
T 1rwi_B 86 NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT 140 (270)
T ss_dssp TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS
T ss_pred CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce
Confidence 77888888865543 3443 334578999999999988877778999999877654
No 253
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=86.69 E-value=0.71 Score=45.92 Aligned_cols=56 Identities=4% Similarity=-0.124 Sum_probs=41.7
Q ss_pred ccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCC
Q 001090 4 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 59 (1159)
Q Consensus 4 G~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g 59 (1159)
..++.|.+||...+........+-..+..++|+|||+.+++.-..|+|.+|.+-..
T Consensus 210 ~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 210 HNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp TTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred CCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 34778999998665543322234457899999999998888888999999986543
No 254
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.05 E-value=1.3 Score=39.88 Aligned_cols=52 Identities=10% Similarity=0.266 Sum_probs=38.8
Q ss_pred ccCCCCCCeEEEeeccCCCCCCcEEEEEEEEecCCCCCCCCCCcceeEEEEcCCCCcccccCCCcccc
Q 001090 965 QRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFD 1032 (1159)
Q Consensus 965 ~rnWsvGDRFrm~fe~ED~idg~Ww~GtIvgv~p~dp~wPdSpWe~L~VrWDn~~~E~eRVSPWEIEp 1032 (1159)
...|++|++|...|. ++.||.|+|.++.. . ..+.|.+++. ..+.|.+=.|-|
T Consensus 7 ~~~~kvGd~clA~ws-----Dg~~Y~A~I~~v~~-------~--~~~~V~f~Dy--n~e~v~~~~lrp 58 (74)
T 2equ_A 7 GFDFKAGEEVLARWT-----DCRYYPAKIEAINK-------E--GTFTVQFYDG--VIRCLKRMHIKA 58 (74)
T ss_dssp CCCCCTTCEEEEECS-----SSSEEEEEEEEEST-------T--SSEEEEETTS--CEEEECGGGEEC
T ss_pred CCCCCCCCEEEEECC-----CCCEEEEEEEEECC-------C--CEEEEEEecC--CeEEecHHHCee
Confidence 457999999999993 67999999999974 1 4689999876 444444434444
No 255
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=86.03 E-value=0.86 Score=53.43 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=46.9
Q ss_pred CcccCC--cEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEe----cCceeEEEEecCCCC
Q 001090 2 SAGYDG--KTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILS----DDVGQLYILNTGQGE 60 (1159)
Q Consensus 2 SAG~DG--~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~t----D~~G~l~Ifg~G~g~ 60 (1159)
++..|| +|.+||+.+|..++.+..+.+.|..+.|+|||..|+.+ ..-++|++|++..++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 455677 46677888999888888778889999999999887733 345899999997765
No 256
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=85.70 E-value=0.65 Score=54.77 Aligned_cols=56 Identities=9% Similarity=0.117 Sum_probs=41.2
Q ss_pred cccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCce-------------eEEEEecCCCC
Q 001090 3 AGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVG-------------QLYILNTGQGE 60 (1159)
Q Consensus 3 AG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G-------------~l~Ifg~G~g~ 60 (1159)
|+.+.+|+|||+.+|+.+..- ........++|| ||..|+.+...+ +|+++.+|++.
T Consensus 151 G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~ 219 (693)
T 3iuj_A 151 GSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQ 219 (693)
T ss_dssp SCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCG
T ss_pred CCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCc
Confidence 444578999999999977642 122235678999 999999776553 49999998864
No 257
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=85.62 E-value=0.87 Score=38.67 Aligned_cols=54 Identities=26% Similarity=0.511 Sum_probs=37.9
Q ss_pred cCCCCCCeEEEeeccCCCCCCcEEEEEEEEecCCCCCCCCCCcceeEEEEcCCCCcccccCCCcccc
Q 001090 966 RNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFD 1032 (1159)
Q Consensus 966 rnWsvGDRFrm~fe~ED~idg~Ww~GtIvgv~p~dp~wPdSpWe~L~VrWDn~~~E~eRVSPWEIEp 1032 (1159)
+.|++|+.|...|. .++.||.++|+++.+.. ..+.|.+.+=+ ..+.|..=+|-+
T Consensus 2 ~~~~~G~~c~A~~s----~Dg~wYrA~I~~i~~~~--------~~~~V~f~DYG-n~e~v~~~~Lr~ 55 (59)
T 1mhn_A 2 QQWKVGDKCSAIWS----EDGCIYPATIASIDFKR--------ETCVVVYTGYG-NREEQNLSDLLS 55 (59)
T ss_dssp CCCCTTCEEEEECT----TTSCEEEEEEEEEETTT--------TEEEEEETTTT-EEEEEEGGGCBC
T ss_pred CcCCcCCEEEEEEC----CCCCEEEEEEEEEcCCC--------CEEEEEEEcCC-CEEEEcHHHeeC
Confidence 47999999999993 36799999999996421 46789986643 444444334433
No 258
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=85.38 E-value=1.4 Score=44.61 Aligned_cols=57 Identities=11% Similarity=0.006 Sum_probs=42.8
Q ss_pred ccCCcEEEEEcc-CCee-----eEEeecCc-ceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 4 GYDGKTIVWDIW-EGIP-----IRIYEISR-FRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 4 G~DG~I~lWDI~-~G~~-----Ir~f~~g~-~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
..++.|.+||+. +|.. +..+.++. +.+..++|+|||..++++-..|.|.+|+..++.
T Consensus 195 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 195 TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS
T ss_pred CCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc
Confidence 457889999997 6752 22233333 678889999999998888788999999986554
No 259
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=85.27 E-value=0.77 Score=54.34 Aligned_cols=52 Identities=10% Similarity=0.188 Sum_probs=38.0
Q ss_pred CcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCce--------------eEEEEecCCCC
Q 001090 7 GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVG--------------QLYILNTGQGE 60 (1159)
Q Consensus 7 G~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G--------------~l~Ifg~G~g~ 60 (1159)
.+|+|||+.+|+.+.. ......+..++|||| ..|+.+..++ +|+++.+|++.
T Consensus 189 ~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~ 254 (741)
T 1yr2_A 189 RTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQ 254 (741)
T ss_dssp EEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCG
T ss_pred EEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCc
Confidence 4699999999998764 223334568999999 9998765544 37777777654
No 260
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=84.65 E-value=0.96 Score=51.31 Aligned_cols=54 Identities=20% Similarity=0.246 Sum_probs=45.6
Q ss_pred CcEEEEEccCCeeeEEeecCcceeeeeeeCCCCC-EEEEec-CceeEEEEecCCCCC
Q 001090 7 GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGA-SIILSD-DVGQLYILNTGQGES 61 (1159)
Q Consensus 7 G~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt-~~a~tD-~~G~l~Ifg~G~g~~ 61 (1159)
++|.+-|+.++++++.+.-++ .++.++|||||+ .|.+++ ..|.|++|+..+++.
T Consensus 311 ~~V~viD~~t~kv~~~i~vg~-~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 311 RFVVVLDAKTGERLAKFEMGH-EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred CEEEEEECCCCeEEEEEECCC-CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence 479999999999999998665 688999999997 666655 489999999988763
No 261
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=84.13 E-value=1.3 Score=50.79 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=47.4
Q ss_pred CCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCC-EEEEec-CceeEEEEecCCCCC
Q 001090 6 DGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGA-SIILSD-DVGQLYILNTGQGES 61 (1159)
Q Consensus 6 DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt-~~a~tD-~~G~l~Ifg~G~g~~ 61 (1159)
+++|-+.|+.+++.++.+..+. ..+.++|+|||+ .+.++. ..|.|.+||+-+++.
T Consensus 349 s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 349 SRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred CCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCE
Confidence 4689999999999999987554 588999999999 888888 599999999887763
No 262
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=84.07 E-value=1.2 Score=46.20 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=34.9
Q ss_pred CCcEEEEEccCCeeeEEeecCcceeeeeeeC-CCCCEEEEec
Q 001090 6 DGKTIVWDIWEGIPIRIYEISRFRLVDGKFS-PDGASIILSD 46 (1159)
Q Consensus 6 DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FS-PDGt~~a~tD 46 (1159)
++.|.+||..+|+.++.+..+...+..++|+ |||..|.+|.
T Consensus 219 ~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 219 GGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp TTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred CCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 5679999999999999988776789999999 9998776554
No 263
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=83.99 E-value=1.9 Score=45.88 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=43.3
Q ss_pred CCcEEEEEccCCeeeEEeecC------cceeeeeeeCCCCCEEEEecC----ceeEEEEecCCCC
Q 001090 6 DGKTIVWDIWEGIPIRIYEIS------RFRLVDGKFSPDGASIILSDD----VGQLYILNTGQGE 60 (1159)
Q Consensus 6 DG~I~lWDI~~G~~Ir~f~~g------~~~i~D~~FSPDGt~~a~tD~----~G~l~Ifg~G~g~ 60 (1159)
+++|.+||+.+|+.++.|... ...+.+++|+|++..+.++|. .+.|.+|++..+.
T Consensus 92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 678999999999999988632 134689999998766666664 7899999987654
No 264
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=83.20 E-value=1.3 Score=50.24 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=45.5
Q ss_pred cccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 3 AGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 3 AG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
.+.+|.|.+||+.+-........+...|.+++|.+- .||+++.+|.|+||++..+.
T Consensus 102 v~~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~ 157 (388)
T 1xip_A 102 VSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS 157 (388)
T ss_dssp EEESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC
T ss_pred EEcCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc
Confidence 347899999999877766666666677899998876 39999999999999997654
No 265
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=83.08 E-value=1.2 Score=41.35 Aligned_cols=56 Identities=25% Similarity=0.486 Sum_probs=40.7
Q ss_pred ccCCCCCCeEEEeeccCCCCCCcEEEEEEEEecCCCCCCCCCCcceeEEEEcCCCCcccccCCCccccC
Q 001090 965 QRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDS 1033 (1159)
Q Consensus 965 ~rnWsvGDRFrm~fe~ED~idg~Ww~GtIvgv~p~dp~wPdSpWe~L~VrWDn~~~E~eRVSPWEIEpi 1033 (1159)
...|++|+.|...|. .++.||.++|.++.+.. ..+.|.+..=+ ..+.|..=+|-|+
T Consensus 8 ~~~~kvGd~C~A~ys----~Dg~wYrA~I~~i~~~~--------~~~~V~fiDYG-N~E~V~~~~Lrp~ 63 (88)
T 1g5v_A 8 LQQWKVGDKCSAIWS----EDGCIYPATIASIDFKR--------ETCVVVYTGYG-NREEQNLSDLLSP 63 (88)
T ss_dssp -CCCCSSCEEEEECT----TTCCEEEEEEEEEETTT--------TEEEEEETTTC-CEEEEEGGGCBCC
T ss_pred cCCCCCCCEEEEEEC----CCCCEEEEEEEEecCCC--------CEEEEEEecCC-CEEEEcHHHcccC
Confidence 358999999999993 36899999999997521 46789997653 4555555556554
No 266
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=81.24 E-value=1.9 Score=45.65 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=40.2
Q ss_pred cccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 3 AGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 3 AG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
...++.|.+||..+|+.. .+.. ...+..++|+|||..++++ ..| |++|+...+.
T Consensus 67 d~~~~~i~~~d~~~~~~~-~~~~-~~~v~~i~~~~dg~l~v~~-~~g-l~~~d~~~g~ 120 (326)
T 2ghs_A 67 NILERELHELHLASGRKT-VHAL-PFMGSALAKISDSKQLIAS-DDG-LFLRDTATGV 120 (326)
T ss_dssp EGGGTEEEEEETTTTEEE-EEEC-SSCEEEEEEEETTEEEEEE-TTE-EEEEETTTCC
T ss_pred ECCCCEEEEEECCCCcEE-EEEC-CCcceEEEEeCCCeEEEEE-CCC-EEEEECCCCc
Confidence 345788999999988753 3432 3578899999999988877 344 9999976554
No 267
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=80.38 E-value=2.7 Score=41.90 Aligned_cols=54 Identities=13% Similarity=-0.098 Sum_probs=42.2
Q ss_pred cCCcEEEEEccCCeeeEEee-cCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 5 YDGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 5 ~DG~I~lWDI~~G~~Ir~f~-~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
.++.|.+||. +|+...... .+...+..++|+|||..++++...|.|.+|+. .+.
T Consensus 160 ~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~ 214 (299)
T 2z2n_A 160 QNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE 214 (299)
T ss_dssp TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred CCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence 3578999999 888765423 34456889999999998888888899999997 543
No 268
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=80.33 E-value=1.8 Score=46.67 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=46.0
Q ss_pred ccCCcEEEEEccCCeeeEEeecC-cceeeeeeeCCCCCEEEEecCceeEEEEecCCCCCc
Q 001090 4 GYDGKTIVWDIWEGIPIRIYEIS-RFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ 62 (1159)
Q Consensus 4 G~DG~I~lWDI~~G~~Ir~f~~g-~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~~~ 62 (1159)
-.+++|.++|..+++.++.|.-+ +. -..++|||..+.+++..++|++++..+.+..
T Consensus 83 ~~~~~v~viD~~t~~v~~~i~~g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~ 139 (266)
T 2iwa_A 83 WLKNIGFIYDRRTLSNIKNFTHQMKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLI 139 (266)
T ss_dssp TTCSEEEEEETTTTEEEEEEECCSSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEE
T ss_pred ecCCEEEEEECCCCcEEEEEECCCCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEE
Confidence 35889999999999999999744 22 2448899999999999999999999776533
No 269
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=80.45 E-value=0.39 Score=44.18 Aligned_cols=54 Identities=13% Similarity=0.293 Sum_probs=39.5
Q ss_pred hccCCCCCCeEEEeeccCCCCCCcEEEEEEEEecCCCCCCCCCCcceeEEEEcCCCCcccccCCCccccC
Q 001090 964 IQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDS 1033 (1159)
Q Consensus 964 m~rnWsvGDRFrm~fe~ED~idg~Ww~GtIvgv~p~dp~wPdSpWe~L~VrWDn~~~E~eRVSPWEIEpi 1033 (1159)
|-..|++||+|...|. ++.||.++|.++... ..|.|.++++ ..+.|.+=.|-|+
T Consensus 3 ~~~~~kvGd~clAkws-----Dg~wY~A~I~~v~~~---------~~y~V~F~DG--n~E~V~~s~LrPl 56 (81)
T 2ldm_A 3 MSSEFQINEQVLASWS-----DSRFYPAKVTAVNKD---------GTYTVKFYDG--VVQTVKHIHVKAF 56 (81)
Confidence 4567999999999994 679999999998641 1579999873 4555544445443
No 270
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=78.36 E-value=3.3 Score=42.98 Aligned_cols=53 Identities=11% Similarity=0.040 Sum_probs=38.7
Q ss_pred ccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 4 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 4 G~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
..+++|..||..+|.. +.+. ....+..++|+|||..++++ .+.|++|+...+.
T Consensus 32 ~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 32 IPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQS 84 (297)
T ss_dssp TTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTE
T ss_pred CCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCc
Confidence 3567888888888765 3333 24568889999999977766 4579999976553
No 271
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=77.73 E-value=3.7 Score=40.91 Aligned_cols=51 Identities=8% Similarity=-0.170 Sum_probs=40.0
Q ss_pred cCCcEEEEEccCCeeeEEee-cCcceeeeeeeCCCCCEEEEecCceeEEEEec
Q 001090 5 YDGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNT 56 (1159)
Q Consensus 5 ~DG~I~lWDI~~G~~Ir~f~-~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~ 56 (1159)
.++.|.+||. +|....... .+...+..++|+|||+.++++...|.|.+|+.
T Consensus 202 ~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 202 IGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred CCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 4678999999 888544212 34567899999999998887778899999996
No 272
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=77.28 E-value=2.3 Score=38.24 Aligned_cols=54 Identities=13% Similarity=0.204 Sum_probs=38.8
Q ss_pred cCCCCCCeEEEeeccCCCCCCcEEEEEEEEecCCCCCCCCCCcceeEEEEcCCCCcccccCCCcccc
Q 001090 966 RNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFD 1032 (1159)
Q Consensus 966 rnWsvGDRFrm~fe~ED~idg~Ww~GtIvgv~p~dp~wPdSpWe~L~VrWDn~~~E~eRVSPWEIEp 1032 (1159)
..|++|+.|...|. .++.||.++|+++.... ..+.|.+.+=| ..+.|..=+|.+
T Consensus 16 ~~~kvGd~C~A~ys----~Dg~wYRA~I~~i~~~~--------~~~~V~fvDYG-N~e~V~~~~Lr~ 69 (77)
T 3pnw_C 16 KMWKPGDECFALYW----EDNKFYRAEVEALHSSG--------MTAVVKFIDYG-NYEEVLLSNIKP 69 (77)
T ss_dssp TTCCTTCEEEEEET----TTTEEEEEEEEEECTTS--------SEEEEEETTTC-CEEEEEGGGEEC
T ss_pred CCCCcCCEEEEEEC----CCCCEEEEEEEEEeCCC--------CEEEEEEEcCC-CeEEEeHHHeEE
Confidence 47999999999993 36899999999997521 46789987653 445555444444
No 273
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=76.11 E-value=3.5 Score=44.99 Aligned_cols=56 Identities=13% Similarity=-0.067 Sum_probs=45.6
Q ss_pred ccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCCCc
Q 001090 4 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ 62 (1159)
Q Consensus 4 G~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~~~ 62 (1159)
-.++.+.++|..+++.++.|.-.... ..+++||..|.++|..++|++++..+.+..
T Consensus 113 w~~~~v~V~D~~Tl~~~~ti~~~~eG---wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~ 168 (268)
T 3nok_A 113 WTEGLLFTWSGMPPQRERTTRYSGEG---WGLCYWNGKLVRSDGGTMLTFHEPDGFALV 168 (268)
T ss_dssp SSSCEEEEEETTTTEEEEEEECSSCC---CCEEEETTEEEEECSSSEEEEECTTTCCEE
T ss_pred ccCCEEEEEECCcCcEEEEEeCCCce---eEEecCCCEEEEECCCCEEEEEcCCCCeEE
Confidence 45899999999999999999843221 345589999999999999999998876543
No 274
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=75.53 E-value=2.6 Score=50.37 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=47.2
Q ss_pred cCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCCCc
Q 001090 5 YDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ 62 (1159)
Q Consensus 5 ~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~~~ 62 (1159)
++|.|+.||+.+|+.+-.+..+ ..+..+.++..|..+.+++.+|.|+.|+.-+|+.+
T Consensus 453 ~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 453 WSGKLIAWDPVKQQAAWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp CEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cceeEEEEECCCCCeEeEccCC-CCccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 5799999999999988777543 34556788888888888999999999999888744
No 275
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=74.88 E-value=5.3 Score=40.75 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=41.7
Q ss_pred cccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 3 AGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 3 AG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
++++|.|..+|.. |..+..+..+...+....+.+||..+++ ...|.|+.|+.. +.
T Consensus 113 ~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vg-t~~~~l~~~d~~-g~ 167 (330)
T 3hxj_A 113 TSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVG-SNDNYLYAINPD-GT 167 (330)
T ss_dssp ECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEE-CTTSEEEEECTT-SC
T ss_pred EecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEE-cCCCEEEEECCC-CC
Confidence 4568889999998 8887777766556777788889986654 456889999876 54
No 276
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=74.87 E-value=2.6 Score=49.90 Aligned_cols=59 Identities=14% Similarity=0.026 Sum_probs=46.3
Q ss_pred CcccCCcEEEEEcc-CCeeeEEeec-CcceeeeeeeCCCCCEEE----EecCceeEEEEecCCCC
Q 001090 2 SAGYDGKTIVWDIW-EGIPIRIYEI-SRFRLVDGKFSPDGASII----LSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 2 SAG~DG~I~lWDI~-~G~~Ir~f~~-g~~~i~D~~FSPDGt~~a----~tD~~G~l~Ifg~G~g~ 60 (1159)
++..||...||.+. +|..++.+.. +.+.|..+.|+|||..|+ +...-++|++|++..++
T Consensus 379 ~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 379 SYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 45678888888765 6777777764 477899999999999888 34456999999997765
No 277
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=74.79 E-value=3.5 Score=44.82 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=45.7
Q ss_pred ccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCCCc
Q 001090 4 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ 62 (1159)
Q Consensus 4 G~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~~~ 62 (1159)
-.++++.++|..+++.++.|.-+. .-..+++||..|+++|..++|+++|..+.+..
T Consensus 104 w~~~~v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~ 159 (262)
T 3nol_A 104 WKNGLGFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPV 159 (262)
T ss_dssp SSSSEEEEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEE
T ss_pred eeCCEEEEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEE
Confidence 358899999999999999998532 22456689999999999999999998876533
No 278
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=74.67 E-value=4.9 Score=41.03 Aligned_cols=53 Identities=15% Similarity=0.153 Sum_probs=43.7
Q ss_pred cccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 3 AGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 3 AG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
|+.+|.|..||.. |..+..+......+.++.+.+||..++++ |.|+.|+ -.+.
T Consensus 153 gt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~ 205 (330)
T 3hxj_A 153 GSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGT 205 (330)
T ss_dssp ECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSC
T ss_pred EcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCc
Confidence 4567999999999 99988888766678888889999988877 9999998 4443
No 279
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=74.40 E-value=4.5 Score=43.35 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=44.9
Q ss_pred ccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCCC
Q 001090 4 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 61 (1159)
Q Consensus 4 G~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~~ 61 (1159)
..++.++++|..+++.++.|.-+... ..+++||..|.++|..++|++++..+.+.
T Consensus 82 w~~~~v~v~D~~tl~~~~ti~~~~~G---wglt~dg~~L~vSdgs~~l~~iDp~t~~~ 136 (243)
T 3mbr_X 82 WRNHEGFVYDLATLTPRARFRYPGEG---WALTSDDSHLYMSDGTAVIRKLDPDTLQQ 136 (243)
T ss_dssp SSSSEEEEEETTTTEEEEEEECSSCC---CEEEECSSCEEEECSSSEEEEECTTTCCE
T ss_pred eeCCEEEEEECCcCcEEEEEeCCCCc---eEEeeCCCEEEEECCCCeEEEEeCCCCeE
Confidence 45889999999999999999843222 24458999999999999999999877653
No 280
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=74.14 E-value=4.1 Score=43.16 Aligned_cols=40 Identities=23% Similarity=0.431 Sum_probs=32.4
Q ss_pred CCcEEEEEccCCeeeEEeecCcceeeeeeeC-CCCCEEEEec
Q 001090 6 DGKTIVWDIWEGIPIRIYEISRFRLVDGKFS-PDGASIILSD 46 (1159)
Q Consensus 6 DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FS-PDGt~~a~tD 46 (1159)
++.|.+||. +|+.++.+......+..++|+ |||..|.++.
T Consensus 250 ~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 250 EGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp TTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred CCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence 578999999 788888887766679999998 9988765443
No 281
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=73.43 E-value=5.3 Score=41.82 Aligned_cols=52 Identities=12% Similarity=0.059 Sum_probs=32.7
Q ss_pred CCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecC-ceeEEEEecCC
Q 001090 6 DGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDD-VGQLYILNTGQ 58 (1159)
Q Consensus 6 DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~-~G~l~Ifg~G~ 58 (1159)
+|.|..||..+|....... +-.....++|+|||..|.++|. .++|++|++..
T Consensus 164 ~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 164 TGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp CEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred CceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 3556666666565332221 1122345799999997776655 58999999864
No 282
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=73.26 E-value=3.5 Score=49.21 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=47.5
Q ss_pred CCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCCCc
Q 001090 6 DGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ 62 (1159)
Q Consensus 6 DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~~~ 62 (1159)
.|.|..||+.+|+.+-.+..+ ..++.+.++++|..+.+++.+|.|++|+..+|+..
T Consensus 456 ~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 456 FGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp EEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence 489999999999998777533 45677889999999999999999999999888743
No 283
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=72.88 E-value=7.7 Score=38.62 Aligned_cols=50 Identities=8% Similarity=-0.157 Sum_probs=38.7
Q ss_pred CCcEEEEEccCCeeeEEee-cCcceeeeeeeCCCCCEEEEecCceeEEEEec
Q 001090 6 DGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNT 56 (1159)
Q Consensus 6 DG~I~lWDI~~G~~Ir~f~-~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~ 56 (1159)
.+.|.+||. +|....... .+...+..++++|||+.++++...|.|.+|+.
T Consensus 208 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 208 GNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred CCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 457888888 777655433 34556889999999998888777899999987
No 284
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=71.07 E-value=6.4 Score=43.73 Aligned_cols=53 Identities=9% Similarity=-0.037 Sum_probs=39.2
Q ss_pred cEEEEEccCCeeeEEe----ecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 8 KTIVWDIWEGIPIRIY----EISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 8 ~I~lWDI~~G~~Ir~f----~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
.|.+||..++..++.+ ......+.+++|+|++..|.++|..|+|+.|+...+.
T Consensus 195 ~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~ 251 (409)
T 3hrp_A 195 TVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE 251 (409)
T ss_dssp EEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC
T ss_pred eEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC
Confidence 7889998888776655 2234567899999944444448999999999986553
No 285
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=70.66 E-value=6.3 Score=46.52 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=39.7
Q ss_pred CCcEEEEEccCCee--eEEeec---CcceeeeeeeCCCCCEEEEecC----ceeEEEEecCCC
Q 001090 6 DGKTIVWDIWEGIP--IRIYEI---SRFRLVDGKFSPDGASIILSDD----VGQLYILNTGQG 59 (1159)
Q Consensus 6 DG~I~lWDI~~G~~--Ir~f~~---g~~~i~D~~FSPDGt~~a~tD~----~G~l~Ifg~G~g 59 (1159)
..+|.+|+|.++.. +.+|.. +...+..+.|||||++|+.+-. ...|+++++..+
T Consensus 207 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~ 269 (693)
T 3iuj_A 207 QHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE 269 (693)
T ss_dssp CCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTST
T ss_pred CcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCC
Confidence 34699999998763 556764 3445789999999999875432 248999998665
No 286
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=70.57 E-value=7.8 Score=38.57 Aligned_cols=52 Identities=12% Similarity=-0.044 Sum_probs=40.8
Q ss_pred cCCcEEEEEccCCeeeEEee-cCcceeeeeeeCCCCCEEEEecCceeEEEEecC
Q 001090 5 YDGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 57 (1159)
Q Consensus 5 ~DG~I~lWDI~~G~~Ir~f~-~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G 57 (1159)
.++.|.+||.. |+....-. .+...+..+++.|||..+++....|.|++|+..
T Consensus 39 ~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~ 91 (300)
T 2qc5_A 39 KANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK 91 (300)
T ss_dssp TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC
Confidence 56889999988 77654322 234678999999999988888778999999876
No 287
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=68.26 E-value=3.1 Score=49.97 Aligned_cols=52 Identities=12% Similarity=-0.039 Sum_probs=35.8
Q ss_pred CcEEEEEccCC-eeeEEeecCcceeeeeeeCCCCCEEEEecCc-----eeEEEEecCCCC
Q 001090 7 GKTIVWDIWEG-IPIRIYEISRFRLVDGKFSPDGASIILSDDV-----GQLYILNTGQGE 60 (1159)
Q Consensus 7 G~I~lWDI~~G-~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~-----G~l~Ifg~G~g~ 60 (1159)
.+|.|+|+.+| +.+..-. .....+++|||||+.|+.+..+ -+|+++.+|.+.
T Consensus 201 ~~l~v~dl~~g~~~l~~~~--~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~ 258 (751)
T 2xe4_A 201 YTIEFKRISDPSQTIADKV--SGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQ 258 (751)
T ss_dssp EEEEEEETTCTTCCCCCCE--EEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCG
T ss_pred EEEEEEECCCCCEeCCccc--cCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCc
Confidence 36999999999 6431100 1124578999999999866443 378889888764
No 288
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=68.06 E-value=5.9 Score=35.55 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=38.2
Q ss_pred cCCCCCCeEEEeeccCCCCCCcEEEEEEEEecCCCCCCCCCCcceeEEEEcCCCCcccccCCCccccC
Q 001090 966 RNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDS 1033 (1159)
Q Consensus 966 rnWsvGDRFrm~fe~ED~idg~Ww~GtIvgv~p~dp~wPdSpWe~L~VrWDn~~~E~eRVSPWEIEpi 1033 (1159)
..|++|+.|...|. .++.||.++|+++... =..+.|.+.+=+ ..+.|..=+|-++
T Consensus 8 ~~~~~G~~c~A~~s----~Dg~wYRA~I~~i~~~--------~~~~~V~fiDYG-N~e~V~~~~Lr~l 62 (78)
T 2d9t_A 8 KVWKPGDECFALYW----EDNKFYRAEVEALHSS--------GMTAVVKFTDYG-NYEEVLLSNIKPV 62 (78)
T ss_dssp CCCCTTCEEEEECT----TTCCEEEEEEEEECSS--------SSEEEEEETTTT-EEEEEEGGGEEEC
T ss_pred cCCCcCCEEEEEEC----CCCCEEEEEEEEEeCC--------CCEEEEEEEcCC-CeEEEcHHHeEeC
Confidence 47999999999994 3679999999998641 146789986643 4444443344443
No 289
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=66.57 E-value=12 Score=32.75 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=42.3
Q ss_pred CCCCCCeEEEeeccCCCCCCcEEEEEEEEecCCCCCCCCCCcceeEEEEcCCCCcccccCCCccccCCC
Q 001090 967 NWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDSDT 1035 (1159)
Q Consensus 967 nWsvGDRFrm~fe~ED~idg~Ww~GtIvgv~p~dp~wPdSpWe~L~VrWDn~~~E~eRVSPWEIEpid~ 1035 (1159)
.+.+|+-+-..|. ++..|-|||+.|... =+++.|+..++ -.-.+.+++|.+...
T Consensus 3 ~f~~GedVLarws-----DG~fYlGtI~~V~~~--------~~~clV~F~D~--s~~W~~~kdi~~~~~ 56 (58)
T 4hcz_A 3 RLWEGQDVLARWT-----DGLLYLGTIKKVDSA--------REVCLVQFEDD--SQFLVLWKDISPAAL 56 (58)
T ss_dssp SCCTTCEEEEECT-----TSCEEEEEEEEEETT--------TTEEEEEETTS--CEEEEEGGGEEECSC
T ss_pred ccccCCEEEEEec-----CCCEEeEEEEEEecC--------CCEEEEEEcCC--CeEEEEhHHcccccC
Confidence 4788999999884 689999999999863 24788998776 457788888876543
No 290
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=64.19 E-value=8.4 Score=41.85 Aligned_cols=65 Identities=22% Similarity=0.234 Sum_probs=46.6
Q ss_pred CcccCC--cEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEE-EecCceeEEEEecCCCCCccCCcc
Q 001090 2 SAGYDG--KTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASII-LSDDVGQLYILNTGQGESQKDAKY 67 (1159)
Q Consensus 2 SAG~DG--~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a-~tD~~G~l~Ifg~G~g~~~~~~p~ 67 (1159)
|+|.+| .|++.|+.+|+.++...-. ..+|-...+++|..|- ++-..+.+++|+..+.+.....++
T Consensus 58 stG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~ 125 (262)
T 3nol_A 58 STGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNY 125 (262)
T ss_dssp EEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred ECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEEC
Confidence 567776 9999999999999988643 2445555566665555 555689999999987765444443
No 291
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=63.69 E-value=5.4 Score=47.55 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=32.1
Q ss_pred cccCCcEEEEEccCCeeeEEeecCc-ceeeeeeeCCCCCEEEEe
Q 001090 3 AGYDGKTIVWDIWEGIPIRIYEISR-FRLVDGKFSPDGASIILS 45 (1159)
Q Consensus 3 AG~DG~I~lWDI~~G~~Ir~f~~g~-~~i~D~~FSPDGt~~a~t 45 (1159)
++.||.|++||+.+|++|..|..+. ..-.-+.|++||+.+++.
T Consensus 494 g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 494 GTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred ECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence 5679999999999999999998543 222334567999866543
No 292
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=63.45 E-value=8.4 Score=45.06 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=46.9
Q ss_pred cCCcEEEEEccCCeeeEEeecC---cceeeeeeeCCCCCEEEEec-------------------CceeEEEEecCCCC
Q 001090 5 YDGKTIVWDIWEGIPIRIYEIS---RFRLVDGKFSPDGASIILSD-------------------DVGQLYILNTGQGE 60 (1159)
Q Consensus 5 ~DG~I~lWDI~~G~~Ir~f~~g---~~~i~D~~FSPDGt~~a~tD-------------------~~G~l~Ifg~G~g~ 60 (1159)
..|.|.|.|..++++++.+..+ .+--+|+-|+|||..|++++ ...+|++|++..++
T Consensus 162 ~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k 239 (462)
T 2ece_A 162 GPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK 239 (462)
T ss_dssp SCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE
T ss_pred CCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc
Confidence 3589999999999999999743 23467899999999999996 47899999998764
No 293
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=61.65 E-value=16 Score=42.77 Aligned_cols=53 Identities=9% Similarity=0.159 Sum_probs=40.1
Q ss_pred ccCCcEEEEEccCCeeeEEeecC-c-ceeeeeee--CCCCCEEEEec------CceeEEEEec
Q 001090 4 GYDGKTIVWDIWEGIPIRIYEIS-R-FRLVDGKF--SPDGASIILSD------DVGQLYILNT 56 (1159)
Q Consensus 4 G~DG~I~lWDI~~G~~Ir~f~~g-~-~~i~D~~F--SPDGt~~a~tD------~~G~l~Ifg~ 56 (1159)
-++.+|.+||+.+|+.+..+.-+ . .....++| +|||+++-++. ..++|++|..
T Consensus 225 ~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~ 287 (462)
T 2ece_A 225 RYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFY 287 (462)
T ss_dssp HSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred ccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence 36899999999999999988865 2 33445545 99999887666 5678876554
No 294
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=61.09 E-value=17 Score=38.93 Aligned_cols=79 Identities=13% Similarity=-0.012 Sum_probs=56.1
Q ss_pred cCCcEEEEEccCCeeeEEee-cCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCCCccCCcccc------ccccCCcc
Q 001090 5 YDGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQ------FFLGDYRP 77 (1159)
Q Consensus 5 ~DG~I~lWDI~~G~~Ir~f~-~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~~~~~~p~EQ------FF~tDYrp 77 (1159)
.++.|+.-|.. |..++.+. +|....-.+++.+||.++++....++|++|.++............ -+..++.-
T Consensus 47 ~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EG 125 (255)
T 3qqz_A 47 KPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEG 125 (255)
T ss_dssp TTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEE
T ss_pred CCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcce
Confidence 36788888998 99999885 566788889999999988888888999999987654211111111 12344556
Q ss_pred ceecCCC
Q 001090 78 LVQDTYG 84 (1159)
Q Consensus 78 LirD~~g 84 (1159)
|.+|..+
T Consensus 126 LA~d~~~ 132 (255)
T 3qqz_A 126 LAYSRQD 132 (255)
T ss_dssp EEEETTT
T ss_pred EEEeCCC
Confidence 7776655
No 295
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=60.43 E-value=12 Score=36.96 Aligned_cols=42 Identities=26% Similarity=0.556 Sum_probs=31.0
Q ss_pred cCCCCCCeEEEeeccCCCCCCcEEEEEEEEecCCCCCCCCCCcceeEEEEcC
Q 001090 966 RNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKT 1017 (1159)
Q Consensus 966 rnWsvGDRFrm~fe~ED~idg~Ww~GtIvgv~p~dp~wPdSpWe~L~VrWDn 1017 (1159)
..+++||.+.++.+..+...-.||.|+|+.+.. ..|.|.++.
T Consensus 59 ~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg----------~f~~V~y~~ 100 (128)
T 3h8z_A 59 KEITEGDEVEVYSRANEQEPCGWWLARVRMMKG----------DFYVIEYAA 100 (128)
T ss_dssp -CCCTTCEEEEEECC---CCCEEEEEEEEEEET----------TEEEEEETT
T ss_pred cCCCCCCEEEEEecCCCCCcCccEEEEEEEeeC----------CEEEEEEcC
Confidence 578999999999987665566899999999974 257788443
No 296
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=59.08 E-value=11 Score=40.64 Aligned_cols=91 Identities=10% Similarity=-0.077 Sum_probs=56.7
Q ss_pred CCcEEEEEccCCeeeEEeecCcceeeeeeeCCCC-CEEEEecCceeEEEEecCCCCCccCCccc---c-ccccCCcccee
Q 001090 6 DGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDG-ASIILSDDVGQLYILNTGQGESQKDAKYD---Q-FFLGDYRPLVQ 80 (1159)
Q Consensus 6 DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDG-t~~a~tD~~G~l~Ifg~G~g~~~~~~p~E---Q-FF~tDYrpLir 80 (1159)
++.|.+.|+.+|+.++.+.-+.. .+-..|+++| +.++++-..|.+++|+..+.+.....++. - -+..|..-|+-
T Consensus 43 ~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~v 121 (266)
T 2iwa_A 43 RSSVRQVALQTGKVENIHKMDDS-YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYG 121 (266)
T ss_dssp TCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEE
T ss_pred CCEEEEEECCCCCEEEEEecCCC-cceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEE
Confidence 58999999999999998763321 2222355556 45556667899999999877644444332 2 24445444444
Q ss_pred -cCCC--CccccccCcCCcc
Q 001090 81 -DTYG--NVLDQETQLAPHR 97 (1159)
Q Consensus 81 -D~~g--~vlDe~Tq~~PHL 97 (1159)
|..+ ++||.+|......
T Consensus 122 s~gs~~l~viD~~t~~v~~~ 141 (266)
T 2iwa_A 122 SDGTSILYEIDPHTFKLIKK 141 (266)
T ss_dssp ECSSSEEEEECTTTCCEEEE
T ss_pred ECCCCeEEEEECCCCcEEEE
Confidence 3222 2788888665444
No 297
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=58.73 E-value=10 Score=45.18 Aligned_cols=58 Identities=17% Similarity=0.259 Sum_probs=46.5
Q ss_pred ccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCCCc
Q 001090 4 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ 62 (1159)
Q Consensus 4 G~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~~~ 62 (1159)
.++|.|..||+.+|+.+-.+..+ ..++.+.++..|..+.+++.+|.|+.|+.-+|+.+
T Consensus 435 ~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 435 VVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp GCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 46799999999999988766543 23455677778888888999999999999888644
No 298
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=58.28 E-value=5.1 Score=43.73 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=45.1
Q ss_pred CcccCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCE-EEEecCceeEEEEecCCCCCccCCc
Q 001090 2 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGAS-IILSDDVGQLYILNTGQGESQKDAK 66 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~-~a~tD~~G~l~Ifg~G~g~~~~~~p 66 (1159)
|+|.+|+|.+.|+.+|+.++.. -. ..+|-...+++|.. ++++=..+.+++|+..+.+.....+
T Consensus 70 stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~ 133 (268)
T 3nok_A 70 STGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR 133 (268)
T ss_dssp EETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred EcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence 6788999999999999999987 32 23444334455544 4566678999999998776444433
No 299
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=54.64 E-value=20 Score=37.93 Aligned_cols=60 Identities=22% Similarity=0.333 Sum_probs=42.4
Q ss_pred cccCCcEEEEEccCCeeeEEeecCc--------ceeeeeeeCCCCCEEEEecCceeEEEEecCCCCCc
Q 001090 3 AGYDGKTIVWDIWEGIPIRIYEISR--------FRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ 62 (1159)
Q Consensus 3 AG~DG~I~lWDI~~G~~Ir~f~~g~--------~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~~~ 62 (1159)
++.+|.|..||..+|+.+-.+..+. ..........++..|.+++..|.|+.|+..+|+..
T Consensus 59 ~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~ 126 (376)
T 3q7m_A 59 ADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVA 126 (376)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEE
T ss_pred EcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEE
Confidence 4568999999999999987776431 22223333445666777777899999998877643
No 300
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=53.06 E-value=13 Score=33.71 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=40.2
Q ss_pred cCCCCCCeEEEeeccCCCCCCcEEEEEEEEecCCCCCCCCCCcceeEEEEcCCCCcccccCCCccccCC
Q 001090 966 RNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDSD 1034 (1159)
Q Consensus 966 rnWsvGDRFrm~fe~ED~idg~Ww~GtIvgv~p~dp~wPdSpWe~L~VrWDn~~~E~eRVSPWEIEpid 1034 (1159)
..|++|+.|-..|. .++.||.++|+++... ..+.|.+-+-| ..+.|..=+|.++.
T Consensus 26 ~~~~~G~~c~a~~~----~d~~wyRA~I~~~~~~---------~~~~V~fvDyG-n~e~v~~~~lr~l~ 80 (94)
T 3fdr_A 26 LTVHVGDIVAAPLP----TNGSWYRARVLGTLEN---------GNLDLYFVDFG-DNGDCPLKDLRALR 80 (94)
T ss_dssp CCCCTTCEEEEEET----TTTEEEEEEEEEECTT---------SCEEEEETTTC-CEEEECGGGCEECC
T ss_pred CCCCCCCEEEEEEC----CCCeEEEEEEEEECCC---------CeEEEEEEcCC-CeEEEEHHHhhhcC
Confidence 36999999999883 3689999999999631 25778885543 56667766666653
No 301
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=52.25 E-value=31 Score=30.88 Aligned_cols=51 Identities=8% Similarity=0.164 Sum_probs=38.0
Q ss_pred CCCCCCeEEEeeccCCCCCCcEEEEEEEEecCCCCCCCCCCcceeEEEEcCCCCcccccCCCcccc
Q 001090 967 NWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFD 1032 (1159)
Q Consensus 967 nWsvGDRFrm~fe~ED~idg~Ww~GtIvgv~p~dp~wPdSpWe~L~VrWDn~~~E~eRVSPWEIEp 1032 (1159)
.|++|+-+...|. ++..|.|+|+.|... =.++.|++-++ -.-.|.-|||.+
T Consensus 13 ~f~vGddVLA~wt-----DGl~Y~gtI~~V~~~--------~gtC~V~F~D~--s~~w~~~kdi~~ 63 (66)
T 2eqj_A 13 KFEEGQDVLARWS-----DGLFYLGTIKKINIL--------KQSCFIIFEDS--SKSWVLWKDIQT 63 (66)
T ss_dssp CSCTTCEEEEECT-----TSCEEEEEEEEEETT--------TTEEEEEETTT--EEEEEETTTEEC
T ss_pred cccCCCEEEEEEc-----cCcEEEeEEEEEccC--------CcEEEEEEccC--CEEEEEeecccc
Confidence 6999999999993 688999999999963 24678887655 234555555543
No 302
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=52.20 E-value=22 Score=40.59 Aligned_cols=48 Identities=29% Similarity=0.384 Sum_probs=35.1
Q ss_pred cCCcEEEEEccCCeeeEEee---------------cCcceeeeeeeCCCCC-EEEEecCceeEE
Q 001090 5 YDGKTIVWDIWEGIPIRIYE---------------ISRFRLVDGKFSPDGA-SIILSDDVGQLY 52 (1159)
Q Consensus 5 ~DG~I~lWDI~~G~~Ir~f~---------------~g~~~i~D~~FSPDGt-~~a~tD~~G~l~ 52 (1159)
|.|.++|=++..|.+.++-. ...+.+.|++|.|||. .++++|..|.|+
T Consensus 367 ~~g~lfv~~~~~~~i~~v~l~~~g~~~~~~~~~~~~~~~R~~dv~~gpDG~~Lyv~~d~~G~i~ 430 (454)
T 1cru_A 367 WENTLLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFKSNNRYRDVIASPDGNVLYVLTDTAGNVQ 430 (454)
T ss_dssp CTTEEEEEBSSSCCEEEEEECTTSSSEEEEEEEESCCSSCEEEEEECTTSSCEEEEECSSCCEE
T ss_pred cCCcEEEeecCCCEEEEEEECCCCCeeeeeeeeecccCCCceeEEECCCCCEEEEEECCCCCCc
Confidence 66777777777765554421 1235778999999997 899999889876
No 303
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.15 E-value=15 Score=34.13 Aligned_cols=29 Identities=17% Similarity=0.564 Sum_probs=24.8
Q ss_pred cCCCCCCeEEEeeccCCCCCCcEEEEEEEEecC
Q 001090 966 RNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKP 998 (1159)
Q Consensus 966 rnWsvGDRFrm~fe~ED~idg~Ww~GtIvgv~p 998 (1159)
-.|++||-|...|. .+++||.|+|..+.+
T Consensus 20 ~~~k~g~~vaak~~----d~n~WyRakV~~v~~ 48 (85)
T 2eqk_A 20 VKWENDMHCAVKIQ----DKNQWRRGQIIRMVT 48 (85)
T ss_dssp CCCCSSCEEEEECS----SSCCEEEEEEEEECS
T ss_pred cCccCCCEEEEEeC----CCCeEEEEEEEEecC
Confidence 47999999999885 246999999999886
No 304
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=50.81 E-value=24 Score=37.34 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=25.9
Q ss_pred cCCcEEEEEccCCeeeEEeec-CcceeeeeeeCCCCCEEEEecCceeEEEEecCCCC
Q 001090 5 YDGKTIVWDIWEGIPIRIYEI-SRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 60 (1159)
Q Consensus 5 ~DG~I~lWDI~~G~~Ir~f~~-g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~ 60 (1159)
.+|.|..+|..+|+.+-.+.. +...+..... .|..|.+++..|.|++|+..+|+
T Consensus 285 ~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 285 QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp TTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred CCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence 455566666666655544431 1111111111 23455556666666666665554
No 305
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=48.82 E-value=18 Score=42.24 Aligned_cols=58 Identities=16% Similarity=0.085 Sum_probs=43.4
Q ss_pred cCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCCCcc
Q 001090 5 YDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 63 (1159)
Q Consensus 5 ~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~~~~ 63 (1159)
.+|.|..||+.+|+.+-.+..+. .++.+.+...|..+.+++.+|+|+.|+.-+|+...
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw 499 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEE
Confidence 57999999999999988876432 23444555555566668889999999998887443
No 306
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=47.51 E-value=22 Score=42.54 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=42.2
Q ss_pred cEEEEEccCCeeeEEeecCcc-----------eeeeeeeCCCCC---EEEEecCceeEEEEecCCCCCc
Q 001090 8 KTIVWDIWEGIPIRIYEISRF-----------RLVDGKFSPDGA---SIILSDDVGQLYILNTGQGESQ 62 (1159)
Q Consensus 8 ~I~lWDI~~G~~Ir~f~~g~~-----------~i~D~~FSPDGt---~~a~tD~~G~l~Ifg~G~g~~~ 62 (1159)
.|+.||..+|+.+=.|...+. .+.|+.+ ||+ .|++++..|.|++|+.-+|+..
T Consensus 276 ~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~--~G~~~~~v~~~~~~G~l~~lD~~tG~~l 342 (689)
T 1yiq_A 276 SIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI--DGKPRKVLMQAPKNGFFYVIDRATGELL 342 (689)
T ss_dssp EEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE--TTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred eEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc--CCcEEEEEEEECCCCeEEEEECCCCCEe
Confidence 599999999999988875322 2344444 887 7999999999999999888744
No 307
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=46.53 E-value=18 Score=43.57 Aligned_cols=52 Identities=13% Similarity=0.060 Sum_probs=39.9
Q ss_pred CcEEEEEccC--Cee-eEEeecCcceeeeeeeCCCCCEEEEec-CceeEEEEecCCC
Q 001090 7 GKTIVWDIWE--GIP-IRIYEISRFRLVDGKFSPDGASIILSD-DVGQLYILNTGQG 59 (1159)
Q Consensus 7 G~I~lWDI~~--G~~-Ir~f~~g~~~i~D~~FSPDGt~~a~tD-~~G~l~Ifg~G~g 59 (1159)
+.|-|-|+.+ |.. ++..--+ .....+.|||||+++++++ ...++++|++...
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred CcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 4588999999 776 4444332 3556789999999998887 6899999998753
No 308
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=45.68 E-value=33 Score=36.80 Aligned_cols=64 Identities=13% Similarity=0.054 Sum_probs=42.9
Q ss_pred CcccCC--cEEEEEccCCeeeEEeecCcceeeeeeeCCCC-CEEEEecCceeEEEEecCCCCCccCCc
Q 001090 2 SAGYDG--KTIVWDIWEGIPIRIYEISRFRLVDGKFSPDG-ASIILSDDVGQLYILNTGQGESQKDAK 66 (1159)
Q Consensus 2 SAG~DG--~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDG-t~~a~tD~~G~l~Ifg~G~g~~~~~~p 66 (1159)
|.|.+| .|...|+.+|+.++...-.. .+|-...+++| +.++++=..|.+++|+..+.+.....+
T Consensus 36 stG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~ 102 (243)
T 3mbr_X 36 STGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFR 102 (243)
T ss_dssp EECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred ECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEe
Confidence 456654 89999999999999886332 22333334444 555567678999999987765444333
No 309
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=44.92 E-value=37 Score=40.78 Aligned_cols=52 Identities=12% Similarity=0.092 Sum_probs=36.2
Q ss_pred cEEEEEccCCe--eeEEeecC-cceeeeeeeCCCCCEEEEec---CceeEEEEecCCC
Q 001090 8 KTIVWDIWEGI--PIRIYEIS-RFRLVDGKFSPDGASIILSD---DVGQLYILNTGQG 59 (1159)
Q Consensus 8 ~I~lWDI~~G~--~Ir~f~~g-~~~i~D~~FSPDGt~~a~tD---~~G~l~Ifg~G~g 59 (1159)
+|.+|++.+|. .+.+|... ..-..++.|||||++||.+. ..-.|+++++..+
T Consensus 248 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 248 KVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 68889998885 34566632 33456889999999998654 3446777777554
No 310
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=40.12 E-value=32 Score=32.06 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=40.2
Q ss_pred cCCCCCCeEEEeeccCCCCCCcEEEEEEEEecCCCCCCCCCCcceeEEEEcCCCCcccccCCCccccC
Q 001090 966 RNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDS 1033 (1159)
Q Consensus 966 rnWsvGDRFrm~fe~ED~idg~Ww~GtIvgv~p~dp~wPdSpWe~L~VrWDn~~~E~eRVSPWEIEpi 1033 (1159)
..|.+|+-|-..|. .++.||.++|+++.+ + ..+.|.+-+-| ..+.|..=+|.++
T Consensus 31 ~~~~~G~~c~a~~~----~d~~wyRA~V~~~~~------~---~~~~V~fvDyG-n~e~v~~~~Lr~l 84 (110)
T 2diq_A 31 LTVHVGDIVAAPLP----TNGSWYRARVLGTLE------N---GNLDLYFVDFG-DNGDCPLKDLRAL 84 (110)
T ss_dssp CCCCTTCEEEECCT----TTCSCEEEEECCCCS------S---SCEEEEETTTC-CEEEECGGGCEEC
T ss_pred CCCCCCCEEEEEEC----CCCeEEEEEEEEECC------C---CeEEEEEEeCC-CeEEEehHHhhcC
Confidence 37899999999883 357999999998864 1 35788886553 5677777777764
No 311
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=38.93 E-value=32 Score=40.44 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=42.3
Q ss_pred cCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCCCcc
Q 001090 5 YDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 63 (1159)
Q Consensus 5 ~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~~~~ 63 (1159)
.+|.|..||+.+|+.+=.+..+ ..++.+.++..|-.+.+++.+|.|+.|+..+|+.+.
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW 521 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELW 521 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEE
Confidence 5799999999999988666533 233444444445556668899999999998887543
No 312
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=38.44 E-value=63 Score=33.61 Aligned_cols=33 Identities=12% Similarity=0.080 Sum_probs=22.3
Q ss_pred ceeeeeeeCCCCCEEEEec-C-ceeEEEEecCCCC
Q 001090 28 FRLVDGKFSPDGASIILSD-D-VGQLYILNTGQGE 60 (1159)
Q Consensus 28 ~~i~D~~FSPDGt~~a~tD-~-~G~l~Ifg~G~g~ 60 (1159)
.....++|+|||+.+++.- . .++|+.|+...+.
T Consensus 72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence 4677899999999655432 2 2368888765554
No 313
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=37.73 E-value=42 Score=30.85 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=40.1
Q ss_pred cCCCCCCeEEEeeccCCCCCCcEEEEEEEEecCCCCCCCCCCcceeEEEEcCCCCcccccCCCccccC
Q 001090 966 RNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDS 1033 (1159)
Q Consensus 966 rnWsvGDRFrm~fe~ED~idg~Ww~GtIvgv~p~dp~wPdSpWe~L~VrWDn~~~E~eRVSPWEIEpi 1033 (1159)
-.+.+|+-+-..|. +|..|-|+|+.|... =+++.|+++++ -...+.-+||.+.
T Consensus 25 ~~f~eGeDVLarws-----DGlfYLGTI~kV~~~--------~e~ClV~F~D~--S~~W~~~kdi~~~ 77 (79)
T 2m0o_A 25 PRLWEGQDVLARWT-----DGLLYLGTIKKVDSA--------REVCLVQFEDD--SQFLVLWKDISPA 77 (79)
T ss_dssp CCCCTTCEEEBCCT-----TSCCCEEEEEEEETT--------TTEEEEEETTS--CEEEEETTTBCCC
T ss_pred ceeccCCEEEEEec-----CCCEEeEEEEEeccC--------CCEEEEEEcCC--CeEEEEeeccccc
Confidence 37889999988884 788999999999863 35678998776 3456666777653
No 314
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=36.88 E-value=60 Score=30.15 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=27.7
Q ss_pred CCCCCeEEEeeccCCCCCCcEEEEEEEEecCCCCCCCCCCcceeEEEE-cCC
Q 001090 968 WTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQY-KTE 1018 (1159)
Q Consensus 968 WsvGDRFrm~fe~ED~idg~Ww~GtIvgv~p~dp~wPdSpWe~L~VrW-Dn~ 1018 (1159)
=.+|||+.+.=.. .+..-..|.|++|.-.+..=| |.|+| |++
T Consensus 6 A~vGDrlvv~g~~---vg~~~R~GeIvEV~g~dG~PP------Y~VRw~ddG 48 (83)
T 2a7y_A 6 AKVGDYLVVKGTT---TERHDQHAEIIEVRSADGSPP------YVVRWLVNG 48 (83)
T ss_dssp CCTTEEEEESCTT---TSCCEEEEEEEECSCSSSCSC------EEEEETTTT
T ss_pred ccCCCEEEEecCc---CCCCCcEEEEEEEECCCCCCC------EEEEecCCC
Confidence 3689999883222 245567999999975432213 68999 654
No 315
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=36.12 E-value=47 Score=39.02 Aligned_cols=56 Identities=21% Similarity=0.286 Sum_probs=41.7
Q ss_pred CCcEEEEEccCCeeeEEeecCcc----------eee-eeeeCCCCC---EEEEecCceeEEEEecCCCCCc
Q 001090 6 DGKTIVWDIWEGIPIRIYEISRF----------RLV-DGKFSPDGA---SIILSDDVGQLYILNTGQGESQ 62 (1159)
Q Consensus 6 DG~I~lWDI~~G~~Ir~f~~g~~----------~i~-D~~FSPDGt---~~a~tD~~G~l~Ifg~G~g~~~ 62 (1159)
.+.|+.+|+.+|+.+=.|...+. +++ +.. ..||+ .|++++..|.|++|+.-+|+..
T Consensus 290 ~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~-~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 359 (582)
T 1flg_A 290 TSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYK-AKDGKIVKATAHADRNGFFYVVDRSNGKLQ 359 (582)
T ss_dssp CSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEE-CSSSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred cceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeee-cCCCCEEEEEEEECCCceEEEEECCCCCEe
Confidence 37999999999999988874322 122 210 15895 7889999999999998888743
No 316
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=35.76 E-value=57 Score=32.88 Aligned_cols=52 Identities=12% Similarity=0.068 Sum_probs=34.3
Q ss_pred CCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecC-ceeEEEEecC
Q 001090 6 DGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDD-VGQLYILNTG 57 (1159)
Q Consensus 6 DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~-~G~l~Ifg~G 57 (1159)
.+.|..+|+..+....++..+-.....++|.|+|..|.++|. .++|.++++.
T Consensus 57 ~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~ 109 (267)
T 1npe_A 57 EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD 109 (267)
T ss_dssp TTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC
Confidence 456666776554433333333356788999998777766665 5789998874
No 317
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=35.52 E-value=34 Score=34.20 Aligned_cols=39 Identities=13% Similarity=0.255 Sum_probs=30.8
Q ss_pred CCCCCCeEEEeeccCCCCCCcEEEEEEEEecCCCCCCCCCCcceeEEEEcCC
Q 001090 967 NWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTE 1018 (1159)
Q Consensus 967 nWsvGDRFrm~fe~ED~idg~Ww~GtIvgv~p~dp~wPdSpWe~L~VrWDn~ 1018 (1159)
.|++|+-|-..|. .++.||.|+|+++.+. . .+.|.+-+-
T Consensus 47 ~~~~G~~c~A~~~----~d~~wyRa~I~~~~~~------~---~~~V~fvDy 85 (169)
T 3ntk_A 47 DLKEGALCVAQFP----EDEVFYRAQIRKVLDD------G---KCEVHFIDF 85 (169)
T ss_dssp CCCTTCEEEEEET----TTTEEEEEEEEEECST------T---CEEEEETTT
T ss_pred CCCCCCEEEEEEC----CCCcEEEEEEEEECCC------C---EEEEEEEec
Confidence 7999999999884 3679999999998751 1 577888554
No 318
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=34.87 E-value=74 Score=28.67 Aligned_cols=38 Identities=11% Similarity=0.455 Sum_probs=30.1
Q ss_pred cCCCCCCeEEEeeccCCCCCCcEEEEEEEEecCCCCCCCCCCcceeEEEEcCC
Q 001090 966 RNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTE 1018 (1159)
Q Consensus 966 rnWsvGDRFrm~fe~ED~idg~Ww~GtIvgv~p~dp~wPdSpWe~L~VrWDn~ 1018 (1159)
.+|.+|+.|-+.|. +|..|.|||+.... +++-|++++.
T Consensus 14 ~~~~~geDVL~rw~-----DG~fYLGtIVd~~~----------~~ClV~FeD~ 51 (69)
T 2xk0_A 14 VTYALQEDVFIKCN-----DGRFYLGTIIDQTS----------DQYLIRFDDQ 51 (69)
T ss_dssp CCCCTTCEEEEECT-----TSCEEEEEEEEECS----------SCEEEEETTC
T ss_pred cccccCCeEEEEec-----CCCEEEEEEEecCC----------ceEEEEecCC
Confidence 68999999999884 68999999976553 4567887665
No 319
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=34.87 E-value=41 Score=39.96 Aligned_cols=53 Identities=17% Similarity=0.235 Sum_probs=41.6
Q ss_pred cEEEEEccCCeeeEEeecCcc-----------eeeeeeeCCCCC---EEEEecCceeEEEEecCCCCCc
Q 001090 8 KTIVWDIWEGIPIRIYEISRF-----------RLVDGKFSPDGA---SIILSDDVGQLYILNTGQGESQ 62 (1159)
Q Consensus 8 ~I~lWDI~~G~~Ir~f~~g~~-----------~i~D~~FSPDGt---~~a~tD~~G~l~Ifg~G~g~~~ 62 (1159)
.|+.+|+.+|+.+=.|...+. .+.|+. .||+ .|++++..|.|++|+.-+|+..
T Consensus 271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~--~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELN--IDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE--ETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEec--cCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 599999999999998875432 233433 3887 6899999999999998888744
No 320
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=34.28 E-value=22 Score=35.30 Aligned_cols=65 Identities=18% Similarity=0.257 Sum_probs=46.2
Q ss_pred HHHHhccCCCCCCeEEEeeccCCCCCCcEEEEEEEEecCCCCCCCCCCcceeEEEEcCCCCcccccCCCccccC
Q 001090 960 FDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDS 1033 (1159)
Q Consensus 960 YdkAm~rnWsvGDRFrm~fe~ED~idg~Ww~GtIvgv~p~dp~wPdSpWe~L~VrWDn~~~E~eRVSPWEIEpi 1033 (1159)
|.++|.+.|.+||-+...+. +--||=|+|+...... ...+-.+|.|.|-.+. +...|.|..|.+.
T Consensus 15 ~~~~~~~~f~~GdlVwaK~~-----g~p~WPa~V~~~~~~~---~~~~~~~~~V~FfG~~-~~awv~~~~l~~f 79 (153)
T 4fu6_A 15 YFQGMTRDFKPGDLIFAKMK-----GYPHWPARVDEVPDGA---VKPPTNKLPIFFFGTH-ETAFLGPKDIFPY 79 (153)
T ss_dssp TTTCSGGGCCTTCEEEECCT-----TSCCEEEEECCCC------CCCCTTCEEEEETTTC-CEEEECGGGEEEH
T ss_pred HHhhcccCCCCCCEEEEeCC-----CCCCCCEEEeEchhhc---cCCCCCEEEEEecCCC-CeEEeCHHHccCh
Confidence 45678899999999987542 3479999998654211 1234568999998763 6788888888764
No 321
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=33.34 E-value=56 Score=37.32 Aligned_cols=53 Identities=21% Similarity=0.166 Sum_probs=44.0
Q ss_pred CcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCC
Q 001090 7 GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 59 (1159)
Q Consensus 7 G~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g 59 (1159)
|.|.|+|++||.||-.=....-.||-.+-...+.-|++....|+++-+.+-..
T Consensus 281 G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 281 GYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred cEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 78999999999999444456888998888888888999999999998876543
No 322
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=32.90 E-value=59 Score=32.85 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=38.3
Q ss_pred CCCCCCeEEEeeccCCCCCCcEEEEEEEEecCCCCCCCCCCcceeEEEEcCCCCcccccCCCccccCC
Q 001090 967 NWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDSD 1034 (1159)
Q Consensus 967 nWsvGDRFrm~fe~ED~idg~Ww~GtIvgv~p~dp~wPdSpWe~L~VrWDn~~~E~eRVSPWEIEpid 1034 (1159)
.|.+|+-|-..|. .++.||.|+|+++.+ ..+.|.+-+-| ..+.|..-+|.++.
T Consensus 51 ~~~~g~~c~a~~~----~d~~wyRa~V~~v~~----------~~~~V~~vDyG-~~~~v~~~~l~~l~ 103 (218)
T 2wac_A 51 TPKRGDLVAAQFT----LDNQWYRAKVERVQG----------SNATVLYIDYG-NKETLPTNRLAALP 103 (218)
T ss_dssp CCCTTCEEEEECT----TTCCEEEEEEEEEET----------TEEEEEETTTC-CEEEEEGGGEEECC
T ss_pred cCCcCCEEEEEEC----CCCeEEEEEEEEecC----------CeEEEEEEecC-CeEEEchHHcccCC
Confidence 4899999999884 257999999999863 46788885543 45556555555543
No 323
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=32.53 E-value=34 Score=36.56 Aligned_cols=55 Identities=9% Similarity=0.052 Sum_probs=38.4
Q ss_pred cceeeeeeeCCCC-CEEEEecCceeEEEEecCCCCCccCCccccccccCCccceecCCC
Q 001090 27 RFRLVDGKFSPDG-ASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYG 84 (1159)
Q Consensus 27 ~~~i~D~~FSPDG-t~~a~tD~~G~l~Ifg~G~g~~~~~~p~EQFF~tDYrpLirD~~g 84 (1159)
...+..++|.||+ +.+|++|..|+|+.+++- +......|..-| .||.-|..+.+|
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~--~D~EGIa~~~~g 81 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV--KDLETIEYIGDN 81 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC--SSEEEEEECSTT
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC--CChHHeEEeCCC
Confidence 4579999999974 677789999999999987 654443333222 577766555444
No 324
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.33 E-value=1.3e+02 Score=27.13 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=43.3
Q ss_pred cCCCCCCeEEEeeccCCCCCCcEEEEEEEEecCCCCCCCCCCcceeEEEEcCCCCcccccCCCccccCCCCC
Q 001090 966 RNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDSDTQW 1037 (1159)
Q Consensus 966 rnWsvGDRFrm~fe~ED~idg~Ww~GtIvgv~p~dp~wPdSpWe~L~VrWDn~~~E~eRVSPWEIEpid~p~ 1037 (1159)
..+.+|+-+-.+|. ++..|.|+|+.|... =+++.|++.++ -...+.-|||.+...|.
T Consensus 8 ~~f~eGqdVLarWs-----DGlfYlGtV~kV~~~--------~~~ClV~FeD~--s~~wv~~kdi~~~~~~g 64 (68)
T 2e5p_A 8 PRLWEGQDVLARWT-----DGLLYLGTIKKVDSA--------REVCLVQFEDD--SQFLVLWKDISPAALSG 64 (68)
T ss_dssp CCCCTTCEEEEECT-----TSSEEEEEEEEEETT--------TTEEEEEETTT--EEEEEETTTEECCCSSC
T ss_pred cccccCCEEEEEec-----CCcEEEeEEEEEecC--------CcEEEEEEccC--CeeeeeeecccccccCC
Confidence 46889999999884 688999999999852 35677887655 35677788888765543
No 325
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=30.15 E-value=1.2e+02 Score=27.08 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=34.1
Q ss_pred ccCCCCCCeEEEeeccCCCCCCcEEEEEEEEecCCCCCCCCCCcceeEEEEcCC
Q 001090 965 QRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTE 1018 (1159)
Q Consensus 965 ~rnWsvGDRFrm~fe~ED~idg~Ww~GtIvgv~p~dp~wPdSpWe~L~VrWDn~ 1018 (1159)
...|++||.+..+| . .+...|.++|+++...+| .|.|.+.++
T Consensus 7 ~~~~~vgd~VmaRW-~---Gd~~yYparI~Si~s~~~--------~Y~V~fKdg 48 (66)
T 2l8d_A 7 NRKYADGEVVMGRW-P---GSVLYYEVQVTSYDDASH--------LYTVKYKDG 48 (66)
T ss_dssp SSSSCSSCEEEEEC-T---TSSCEEEEEEEEEETTTT--------EEEEEETTS
T ss_pred ceEeecCCEEEEEc-C---CCccceEEEEEEeccCCc--------eEEEEecCC
Confidence 36899999999999 2 356899999999985433 679999885
No 326
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=29.79 E-value=70 Score=38.04 Aligned_cols=56 Identities=21% Similarity=0.208 Sum_probs=42.3
Q ss_pred CCcEEEEEccCCeeeEEeecCcce-----------eeeeeeCCCC---CEEEEecCceeEEEEecCCCCCc
Q 001090 6 DGKTIVWDIWEGIPIRIYEISRFR-----------LVDGKFSPDG---ASIILSDDVGQLYILNTGQGESQ 62 (1159)
Q Consensus 6 DG~I~lWDI~~G~~Ir~f~~g~~~-----------i~D~~FSPDG---t~~a~tD~~G~l~Ifg~G~g~~~ 62 (1159)
.+.|+.+|..+|+.+=.|...+.. ++|+. -.|| ..|+.++..|.|++++..+|+..
T Consensus 277 ~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~-~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 277 TMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQK-DKDGKARKLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp SSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEE-CTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred cceEEEEeCCCCceeeEeecCCCccccccCCCccEEEecc-ccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence 458999999999999999865432 22321 1589 56788999999999998888743
No 327
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=29.60 E-value=15 Score=44.32 Aligned_cols=47 Identities=6% Similarity=0.122 Sum_probs=33.4
Q ss_pred cccCCcEEEEEccC----------CeeeEEeecC-----cceeeeeeeCCCCCEEEEecCce
Q 001090 3 AGYDGKTIVWDIWE----------GIPIRIYEIS-----RFRLVDGKFSPDGASIILSDDVG 49 (1159)
Q Consensus 3 AG~DG~I~lWDI~~----------G~~Ir~f~~g-----~~~i~D~~FSPDGt~~a~tD~~G 49 (1159)
.--|++|.+||+.+ ...|....-| ...-....++|||++|+++.-.-
T Consensus 348 ~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~s 409 (595)
T 1fwx_A 348 LFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFS 409 (595)
T ss_dssp ETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCC
T ss_pred EecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCC
Confidence 34588999999998 4566666532 23335568899999999876543
No 328
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=29.35 E-value=86 Score=37.12 Aligned_cols=53 Identities=21% Similarity=0.166 Sum_probs=45.5
Q ss_pred CcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCC
Q 001090 7 GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 59 (1159)
Q Consensus 7 G~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g 59 (1159)
|.|.|+|++||.+|-.=......||-.+-...+.-|++....|+++-+.+-..
T Consensus 280 G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 280 GYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred ceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 78999999999999444457888999999999999999999999999987544
No 329
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=28.87 E-value=55 Score=38.91 Aligned_cols=58 Identities=14% Similarity=0.082 Sum_probs=43.0
Q ss_pred cCCcEEEEEccCCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCCCCcc
Q 001090 5 YDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 63 (1159)
Q Consensus 5 ~DG~I~lWDI~~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g~~~~ 63 (1159)
++|.|..||+.+|+.+=.+..+ ..++.+.++-.|-.+.+++.+|.|+.|+.-+|+.+.
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW 508 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW 508 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEE
Confidence 6799999999999988776532 234445555555555568889999999998887543
No 330
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=28.17 E-value=74 Score=37.16 Aligned_cols=54 Identities=24% Similarity=0.219 Sum_probs=40.7
Q ss_pred CcEEEEEccCCeeeEEeecCc----------c-eeeeeeeCCCCC---EEEEecCceeEEEEecCCCCCc
Q 001090 7 GKTIVWDIWEGIPIRIYEISR----------F-RLVDGKFSPDGA---SIILSDDVGQLYILNTGQGESQ 62 (1159)
Q Consensus 7 G~I~lWDI~~G~~Ir~f~~g~----------~-~i~D~~FSPDGt---~~a~tD~~G~l~Ifg~G~g~~~ 62 (1159)
+.|+.+|..+|+.+=.|...+ . .+.+. .+||+ .|++++..|.|++++..+|+..
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~--~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~ 339 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQ--PVNGKMTPLLSHIDRNGILYTLNRENGNLI 339 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEE--EETTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEec--ccCCcEEEEEEEeCCCcEEEEEECCCCCEE
Confidence 469999999999998887432 1 23332 36895 5778999999999998888643
No 331
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=27.23 E-value=1e+02 Score=34.60 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=25.4
Q ss_pred eeeeeeCCCCCEEEEecCceeEEEEecC
Q 001090 30 LVDGKFSPDGASIILSDDVGQLYILNTG 57 (1159)
Q Consensus 30 i~D~~FSPDGt~~a~tD~~G~l~Ifg~G 57 (1159)
+--++|.|||..|++.+..|+|+-|++.
T Consensus 187 ~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 187 YSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp CSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred cceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 4477999999999999999999999987
No 332
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=26.79 E-value=83 Score=35.82 Aligned_cols=66 Identities=12% Similarity=0.178 Sum_probs=45.5
Q ss_pred CcEEEEEccCC--eeeEEeecC------cceeeeeeeC---CC----CCEEEEecC-ceeEEEEecCCCCCccCCccccc
Q 001090 7 GKTIVWDIWEG--IPIRIYEIS------RFRLVDGKFS---PD----GASIILSDD-VGQLYILNTGQGESQKDAKYDQF 70 (1159)
Q Consensus 7 G~I~lWDI~~G--~~Ir~f~~g------~~~i~D~~FS---PD----Gt~~a~tD~-~G~l~Ifg~G~g~~~~~~p~EQF 70 (1159)
-+|++||+.++ +.|+.|.-. ..-+-|+++- |+ +.++-.+|. .+-|.+|++..+++.... ..+
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~--~~~ 200 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT--HPT 200 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE--CGG
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc--cCC
Confidence 37999999999 999998732 2346666665 44 455557774 678999999988754422 345
Q ss_pred cccC
Q 001090 71 FLGD 74 (1159)
Q Consensus 71 F~tD 74 (1159)
|+.|
T Consensus 201 ~~pd 204 (381)
T 3q6k_A 201 FKAE 204 (381)
T ss_dssp GSCC
T ss_pred Cccc
Confidence 5554
No 333
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=26.31 E-value=1.1e+02 Score=34.47 Aligned_cols=53 Identities=9% Similarity=0.026 Sum_probs=36.0
Q ss_pred cCCcEEEEEccCCeeeE-EeecC-cceeeeeeeCCCCCEEEEecC-ceeEEEEecC
Q 001090 5 YDGKTIVWDIWEGIPIR-IYEIS-RFRLVDGKFSPDGASIILSDD-VGQLYILNTG 57 (1159)
Q Consensus 5 ~DG~I~lWDI~~G~~Ir-~f~~g-~~~i~D~~FSPDGt~~a~tD~-~G~l~Ifg~G 57 (1159)
.++.|..+|..+|..+. ++..+ ...-+.++|+|||..|.++|. .++|+.|++.
T Consensus 248 ~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 248 HHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp TCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 45678888888887633 33322 222346999999996666665 5789998864
No 334
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=26.27 E-value=1.2e+02 Score=33.92 Aligned_cols=52 Identities=12% Similarity=0.134 Sum_probs=33.2
Q ss_pred CCcEEEEEccCCeeeEEeecC-cceeeeeeeCCCCCEEEEec-CceeEEEEecC
Q 001090 6 DGKTIVWDIWEGIPIRIYEIS-RFRLVDGKFSPDGASIILSD-DVGQLYILNTG 57 (1159)
Q Consensus 6 DG~I~lWDI~~G~~Ir~f~~g-~~~i~D~~FSPDGt~~a~tD-~~G~l~Ifg~G 57 (1159)
.++|..+|..++.....+..+ ...-..++|+|||.+|.++| ..++|+.|++.
T Consensus 247 ~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 247 AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 355666666655543333322 23456799999999666665 56789998764
No 335
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=26.23 E-value=1.4e+02 Score=35.57 Aligned_cols=55 Identities=11% Similarity=-0.034 Sum_probs=40.6
Q ss_pred cccCCcEEEEEccCCeeeEEee----cCcceeeeeeeCCCCCEEEEecCceeEEEEecCCC
Q 001090 3 AGYDGKTIVWDIWEGIPIRIYE----ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 59 (1159)
Q Consensus 3 AG~DG~I~lWDI~~G~~Ir~f~----~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g 59 (1159)
|.+++-|.+||..+|...+... .....|++++..++|+..+++. +-|++|+...+
T Consensus 423 gt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~ 481 (795)
T 4a2l_A 423 GTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQR 481 (795)
T ss_dssp EETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTT
T ss_pred EeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCC
Confidence 3456778999999887544332 1245799999999999999887 45999987654
No 336
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=26.06 E-value=65 Score=35.01 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=27.8
Q ss_pred eeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecC
Q 001090 19 PIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 57 (1159)
Q Consensus 19 ~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G 57 (1159)
.+.++-.+-..-.+++|.|||+.+ +++..|+|+++.-|
T Consensus 22 ~~~~va~~l~~P~~ia~~pdG~l~-V~e~~g~I~~i~~g 59 (352)
T 2ism_A 22 RVEEVVGGLEVPWALAFLPDGGML-IAERPGRIRLFREG 59 (352)
T ss_dssp CEEEEECCCSCEEEEEECTTSCEE-EEETTTEEEEEETT
T ss_pred EEEEEECCCCCceEEEEcCCCeEE-EEeCCCeEEEEECC
Confidence 445555554567799999999954 55677999999844
No 337
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=24.67 E-value=1.3e+02 Score=32.94 Aligned_cols=45 Identities=18% Similarity=0.171 Sum_probs=29.2
Q ss_pred cCCcEEEEEccCCeeeEE-------------eec-CcceeeeeeeCCCCCEEEEecC-ce
Q 001090 5 YDGKTIVWDIWEGIPIRI-------------YEI-SRFRLVDGKFSPDGASIILSDD-VG 49 (1159)
Q Consensus 5 ~DG~I~lWDI~~G~~Ir~-------------f~~-g~~~i~D~~FSPDGt~~a~tD~-~G 49 (1159)
++|.+++=|...+.+.++ |.. ..+.+.+++|.|||..+++++. .|
T Consensus 275 ~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~~~~G 334 (354)
T 3a9g_A 275 LRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTSNRDG 334 (354)
T ss_dssp GTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEECTTSS
T ss_pred cCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEeCCCC
Confidence 667777766655544332 211 1356889999999988888763 55
No 338
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=24.46 E-value=80 Score=33.91 Aligned_cols=63 Identities=16% Similarity=0.270 Sum_probs=41.9
Q ss_pred CCCCCeEEEeeccCCCCCCcEEEEEEEEecCCCCCCC-CCCcceeEEEEcCCC-CcccccCCCccccCC
Q 001090 968 WTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFP-DSPWERYTVQYKTEP-TETHLHSPWELFDSD 1034 (1159)
Q Consensus 968 WsvGDRFrm~fe~ED~idg~Ww~GtIvgv~p~dp~wP-dSpWe~L~VrWDn~~-~E~eRVSPWEIEpid 1034 (1159)
+++|+-+-.+. ...|+||+|+|+.|....+.-. ...=--|.|+||.-. ..+..+.|++|-|..
T Consensus 3 yki~~~vd~~d----~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~~~~~~~~~~~irpra 67 (226)
T 3ask_A 3 YKVNEYVDARD----TNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPENGVVQMNSRDVRARA 67 (226)
T ss_dssp SCTTCEEEEEC----TTTCCEEEEEEEEEEECC------CCCEEEEEEETTCGGGCEEEEEGGGEEECC
T ss_pred cccCceEEeee----cCCCceeEEEEEEEeccccccCCCCCceEEEeecccCcccCceecccccccccc
Confidence 57888887754 3468999999999998765221 012267889998863 245667777777664
No 339
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=24.08 E-value=68 Score=34.90 Aligned_cols=41 Identities=12% Similarity=0.146 Sum_probs=30.5
Q ss_pred CCeeeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEec
Q 001090 16 EGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 56 (1159)
Q Consensus 16 ~G~~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~ 56 (1159)
.|-.+.++..+-..-+.++|.|||++|.+++..|+|++++.
T Consensus 6 ~g~~~~~va~~l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~ 46 (353)
T 2g8s_A 6 ATVNVEVLQDKLDHPWALAFLPDNHGMLITLRGGELRHWQA 46 (353)
T ss_dssp CCSEEEEEEEEESSEEEEEECSTTCCEEEEETTTEEEEEET
T ss_pred CCcEEEEEECCCCCcEEEEEcCCCCEEEEEeCCceEEEEeC
Confidence 34556666655556789999999994556667899999974
No 340
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.69 E-value=88 Score=39.22 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=19.7
Q ss_pred cccCCcEEEEEccCCeeeEEee
Q 001090 3 AGYDGKTIVWDIWEGIPIRIYE 24 (1159)
Q Consensus 3 AG~DG~I~lWDI~~G~~Ir~f~ 24 (1159)
=+-|++++||++.+|.|+.+..
T Consensus 253 l~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 253 LSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp EETTCEEEEEETTTTEEEEEEE
T ss_pred EECCCEEEEEECCCCCeEeeec
Confidence 3679999999999999999875
No 341
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=23.69 E-value=1.3e+02 Score=30.31 Aligned_cols=51 Identities=8% Similarity=-0.113 Sum_probs=31.2
Q ss_pred CCcEEEEEccCCeeeEEee-cCcceeeeeeeCCCCCEEEEecC---ceeEEEEecC
Q 001090 6 DGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDD---VGQLYILNTG 57 (1159)
Q Consensus 6 DG~I~lWDI~~G~~Ir~f~-~g~~~i~D~~FSPDGt~~a~tD~---~G~l~Ifg~G 57 (1159)
.+.|.++|+.. ...+.+. .+-....+++|+|+|..|-++|. .++|+.+.+.
T Consensus 100 ~~~I~~~~~~g-~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d 154 (267)
T 1npe_A 100 LDRIEVAKMDG-TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD 154 (267)
T ss_dssp TTEEEEEETTS-CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred CCEEEEEEcCC-CCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence 34555666542 2223332 23245688999998776666664 4789888874
No 342
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=22.94 E-value=1e+02 Score=36.10 Aligned_cols=49 Identities=22% Similarity=0.446 Sum_probs=36.7
Q ss_pred cCCcEEEEEccCCe--eeEEee---------cCcceeeeeeeCCCCCEEEE--ecCceeEEEE
Q 001090 5 YDGKTIVWDIWEGI--PIRIYE---------ISRFRLVDGKFSPDGASIIL--SDDVGQLYIL 54 (1159)
Q Consensus 5 ~DG~I~lWDI~~G~--~Ir~f~---------~g~~~i~D~~FSPDGt~~a~--tD~~G~l~If 54 (1159)
.|++|++|||..+. ++ .|. ..-..|-+++|++||.+|=+ +...|-|+-+
T Consensus 147 sD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 147 EDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 48999999999854 33 222 11256889999999999887 5588998766
No 343
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=22.88 E-value=1.2e+02 Score=34.06 Aligned_cols=60 Identities=8% Similarity=0.066 Sum_probs=44.0
Q ss_pred CcccCCcEEEEEccCCeeeEEeec-----C--cceeeeeee---CCCCCEEEEecC-------------ceeEEEEecC-
Q 001090 2 SAGYDGKTIVWDIWEGIPIRIYEI-----S--RFRLVDGKF---SPDGASIILSDD-------------VGQLYILNTG- 57 (1159)
Q Consensus 2 SAG~DG~I~lWDI~~G~~Ir~f~~-----g--~~~i~D~~F---SPDGt~~a~tD~-------------~G~l~Ifg~G- 57 (1159)
|.=|.|+|..||...|....++.. | ...+.-+.| =|+|+.+|++|. ...|+.|++.
T Consensus 30 s~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~ 109 (334)
T 2p9w_A 30 SNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPL 109 (334)
T ss_dssp EETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSC
T ss_pred EeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCc
Confidence 334789999999988866555432 2 225688899 599999998873 6789999987
Q ss_pred --CCCC
Q 001090 58 --QGES 61 (1159)
Q Consensus 58 --~g~~ 61 (1159)
+++.
T Consensus 110 ~~tg~~ 115 (334)
T 2p9w_A 110 SENSKP 115 (334)
T ss_dssp CTTCCC
T ss_pred CCCCCE
Confidence 5543
No 344
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=20.96 E-value=1.7e+02 Score=34.78 Aligned_cols=52 Identities=17% Similarity=0.054 Sum_probs=37.3
Q ss_pred CcEEEEEccCCeeeEEeecC-----cceeeeeeeCCCCCEEEEecCceeEEEEecCCC
Q 001090 7 GKTIVWDIWEGIPIRIYEIS-----RFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 59 (1159)
Q Consensus 7 G~I~lWDI~~G~~Ir~f~~g-----~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g 59 (1159)
+-|.+||..+|...+..... ...|.+++..++|...+++...| |+.|+...+
T Consensus 469 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~ 525 (781)
T 3v9f_A 469 AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQ 525 (781)
T ss_dssp TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCC
T ss_pred CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCC
Confidence 45778898888765544322 35788999999999888887656 777875443
No 345
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=20.33 E-value=1.3e+02 Score=33.55 Aligned_cols=41 Identities=15% Similarity=0.102 Sum_probs=32.4
Q ss_pred eeEEeecCcceeeeeeeCCCCCEEEEecCceeEEEEecCCC
Q 001090 19 PIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 59 (1159)
Q Consensus 19 ~Ir~f~~g~~~i~D~~FSPDGt~~a~tD~~G~l~Ifg~G~g 59 (1159)
.+.++..+-..-+.++|.|||+.|++.-..|+|+++....+
T Consensus 23 ~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g 63 (347)
T 3das_A 23 VLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTG 63 (347)
T ss_dssp EEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred eeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCC
Confidence 45567677677889999999997777766999999986444
Done!