Query 001091
Match_columns 1159
No_of_seqs 555 out of 4059
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 15:35:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001091.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001091hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0054 Multidrug resistance-a 100.0 1E-203 2E-208 1906.1 109.5 944 201-1154 122-1088(1381)
2 PLN03130 ABC transporter C fam 100.0 5E-152 1E-156 1515.1 130.6 1092 12-1134 34-1160(1622)
3 PLN03232 ABC transporter C fam 100.0 7E-150 2E-154 1496.0 131.5 1093 13-1134 35-1157(1495)
4 TIGR00957 MRP_assoc_pro multi 100.0 3E-144 5E-149 1444.6 131.7 1064 52-1147 67-1224(1522)
5 TIGR01271 CFTR_protein cystic 100.0 2E-138 4E-143 1383.6 112.5 924 201-1133 3-1131(1490)
6 PTZ00243 ABC transporter; Prov 100.0 2E-128 5E-133 1287.1 111.2 943 199-1147 57-1221(1560)
7 KOG0055 Multidrug/pheromone ex 100.0 3.2E-88 6.9E-93 836.2 79.1 857 274-1157 24-939 (1228)
8 PTZ00265 multidrug resistance 100.0 6.1E-77 1.3E-81 787.8 101.6 874 266-1153 51-1110(1466)
9 KOG0058 Peptide exporter, ABC 100.0 2E-79 4.4E-84 721.7 62.9 548 266-823 138-706 (716)
10 PRK11174 cysteine/glutathione 100.0 1.2E-76 2.5E-81 735.6 72.2 541 265-822 12-585 (588)
11 COG2274 SunT ABC-type bacterio 100.0 4.2E-75 9E-80 714.0 71.5 543 263-820 142-707 (709)
12 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.5E-72 3.3E-77 709.6 73.6 538 265-820 126-684 (686)
13 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 7.9E-73 1.7E-77 715.3 70.3 538 265-818 144-709 (710)
14 TIGR00958 3a01208 Conjugate Tr 100.0 1.7E-72 3.6E-77 709.3 72.4 534 269-817 155-710 (711)
15 TIGR03375 type_I_sec_LssB type 100.0 4.7E-72 1E-76 706.1 72.3 531 264-808 136-688 (694)
16 KOG0055 Multidrug/pheromone ex 100.0 3.3E-72 7.2E-77 694.0 64.4 541 271-822 660-1226(1228)
17 TIGR01193 bacteriocin_ABC ABC- 100.0 8E-71 1.7E-75 696.3 72.0 536 266-819 147-707 (708)
18 PRK11176 lipid transporter ATP 100.0 1.4E-70 3E-75 680.8 72.0 542 266-821 16-579 (582)
19 PRK10790 putative multidrug tr 100.0 7.4E-70 1.6E-74 675.0 74.9 541 266-822 14-576 (592)
20 TIGR02203 MsbA_lipidA lipid A 100.0 5.4E-70 1.2E-74 674.4 72.2 541 266-820 5-567 (571)
21 COG1132 MdlB ABC-type multidru 100.0 8.7E-69 1.9E-73 661.8 70.8 531 273-822 13-565 (567)
22 TIGR02204 MsbA_rel ABC transpo 100.0 1.5E-68 3.2E-73 662.0 71.5 544 265-820 8-574 (576)
23 PRK11160 cysteine/glutathione 100.0 2E-68 4.2E-73 658.0 72.0 538 269-819 10-572 (574)
24 PRK13657 cyclic beta-1,2-gluca 100.0 3.4E-68 7.4E-73 659.3 73.0 535 268-821 12-570 (588)
25 TIGR02868 CydC thiol reductant 100.0 3E-68 6.5E-73 652.4 68.1 501 267-780 5-529 (529)
26 TIGR01846 type_I_sec_HlyB type 100.0 7.1E-68 1.5E-72 667.7 72.1 542 265-820 129-691 (694)
27 PRK10789 putative multidrug tr 100.0 1.3E-67 2.7E-72 650.7 70.9 527 284-822 4-551 (569)
28 COG4988 CydD ABC-type transpor 100.0 3.5E-67 7.7E-72 608.6 66.4 524 279-822 4-556 (559)
29 TIGR01842 type_I_sec_PrtD type 100.0 3.3E-67 7.1E-72 644.5 69.4 521 271-808 2-542 (544)
30 TIGR01192 chvA glucan exporter 100.0 7.1E-66 1.5E-70 636.2 73.6 535 268-821 12-570 (585)
31 PTZ00265 multidrug resistance 100.0 1.7E-66 3.7E-71 688.4 72.2 539 270-821 820-1465(1466)
32 TIGR02857 CydD thiol reductant 100.0 1E-65 2.3E-70 629.9 67.3 506 274-792 2-529 (529)
33 KOG0057 Mitochondrial Fe/S clu 100.0 2.1E-65 4.6E-70 583.3 57.7 520 288-820 43-585 (591)
34 TIGR00957 MRP_assoc_pro multi 100.0 9.1E-65 2E-69 679.2 71.5 466 344-820 1031-1519(1522)
35 KOG0056 Heavy metal exporter H 100.0 1.3E-66 2.7E-71 577.6 39.6 529 278-823 218-776 (790)
36 PLN03130 ABC transporter C fam 100.0 4.3E-64 9.2E-69 671.4 70.9 469 344-822 979-1475(1622)
37 PLN03232 ABC transporter C fam 100.0 3.1E-63 6.6E-68 663.6 69.5 468 344-822 976-1472(1495)
38 COG4987 CydC ABC-type transpor 100.0 9.6E-63 2.1E-67 561.5 60.1 535 266-819 8-571 (573)
39 PTZ00243 ABC transporter; Prov 100.0 1.4E-62 3.1E-67 656.1 70.5 462 352-822 1032-1547(1560)
40 TIGR01271 CFTR_protein cystic 100.0 2.4E-59 5.3E-64 625.0 72.0 467 345-824 952-1455(1490)
41 TIGR01194 cyc_pep_trnsptr cycl 100.0 5.4E-59 1.2E-63 572.0 62.9 509 269-800 11-551 (555)
42 COG4618 ArpD ABC-type protease 100.0 1.4E-58 3E-63 522.1 53.4 527 263-808 11-560 (580)
43 PRK10522 multidrug transporter 100.0 7.7E-57 1.7E-61 552.7 63.7 506 265-803 3-534 (547)
44 COG5265 ATM1 ABC-type transpor 100.0 5.6E-59 1.2E-63 514.6 38.7 456 353-818 17-495 (497)
45 KOG0054 Multidrug resistance-a 100.0 1.2E-55 2.6E-60 560.0 60.4 464 346-821 886-1375(1381)
46 TIGR00954 3a01203 Peroxysomal 100.0 1.8E-53 3.9E-58 530.3 60.4 501 276-794 97-653 (659)
47 PRK14257 phosphate ABC transpo 100.0 5.9E-48 1.3E-52 441.9 24.6 260 525-808 23-313 (329)
48 cd03289 ABCC_CFTR2 The CFTR su 100.0 6.7E-44 1.5E-48 398.5 25.3 223 590-822 2-238 (275)
49 COG1126 GlnQ ABC-type polar am 100.0 3.6E-41 7.8E-46 346.5 20.8 199 590-809 2-226 (240)
50 cd03291 ABCC_CFTR1 The CFTR su 100.0 4.7E-40 1E-44 368.9 29.1 238 565-816 16-254 (282)
51 cd03250 ABCC_MRP_domain1 Domai 100.0 3.5E-40 7.6E-45 354.7 22.9 200 591-796 1-204 (204)
52 cd03288 ABCC_SUR2 The SUR doma 100.0 9.7E-40 2.1E-44 363.7 25.7 224 588-819 17-254 (257)
53 cd03252 ABCC_Hemolysin The ABC 100.0 9.4E-40 2E-44 359.6 25.2 219 591-818 1-234 (237)
54 COG1116 TauB ABC-type nitrate/ 100.0 7.8E-40 1.7E-44 347.3 19.5 188 590-798 3-212 (248)
55 COG1125 OpuBA ABC-type proline 100.0 1.2E-39 2.5E-44 341.0 17.7 205 591-816 2-233 (309)
56 cd03254 ABCC_Glucan_exporter_l 100.0 5.6E-39 1.2E-43 351.6 23.9 210 590-808 2-226 (229)
57 cd03253 ABCC_ATM1_transporter 100.0 8.8E-39 1.9E-43 351.6 25.3 216 591-816 1-231 (236)
58 cd03251 ABCC_MsbA MsbA is an e 100.0 7.7E-39 1.7E-43 351.6 24.3 210 591-808 1-225 (234)
59 cd03244 ABCC_MRP_domain2 Domai 100.0 1.2E-38 2.5E-43 347.1 24.1 205 590-802 2-220 (221)
60 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.9E-38 4.1E-43 349.5 24.6 211 591-808 1-226 (238)
61 COG1135 AbcC ABC-type metal io 100.0 5.6E-39 1.2E-43 346.1 19.1 209 591-812 2-235 (339)
62 COG3839 MalK ABC-type sugar tr 100.0 9.7E-39 2.1E-43 358.3 20.2 202 590-812 3-227 (338)
63 TIGR01186 proV glycine betaine 100.0 8E-39 1.7E-43 369.1 19.8 192 611-814 6-225 (363)
64 cd03245 ABCC_bacteriocin_expor 100.0 7.4E-38 1.6E-42 340.6 23.9 204 590-801 2-220 (220)
65 COG3840 ThiQ ABC-type thiamine 100.0 1.4E-38 2.9E-43 317.2 16.0 196 591-808 2-219 (231)
66 COG1127 Ttg2A ABC-type transpo 100.0 1.4E-37 3E-42 324.8 22.4 210 588-818 6-245 (263)
67 PRK11650 ugpC glycerol-3-phosp 100.0 1.2E-37 2.6E-42 360.4 24.0 201 590-810 3-226 (356)
68 COG1117 PstB ABC-type phosphat 100.0 2.7E-38 6E-43 323.3 16.3 203 589-808 6-237 (253)
69 COG3842 PotA ABC-type spermidi 100.0 3.9E-38 8.4E-43 355.3 19.1 205 589-814 4-232 (352)
70 PRK13631 cbiO cobalt transport 100.0 1.9E-37 4.1E-42 354.3 24.4 206 588-808 19-265 (320)
71 COG4178 ABC-type uncharacteriz 100.0 3.6E-34 7.8E-39 339.2 52.8 438 340-793 108-587 (604)
72 COG1120 FepC ABC-type cobalami 100.0 8E-38 1.7E-42 338.6 20.0 198 590-808 2-228 (258)
73 cd03290 ABCC_SUR1_N The SUR do 100.0 1.9E-37 4E-42 337.0 22.4 197 592-796 2-218 (218)
74 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.1E-37 4.5E-42 333.5 21.8 198 589-808 3-227 (254)
75 COG1136 SalX ABC-type antimicr 100.0 2.5E-37 5.3E-42 328.6 21.9 193 591-799 2-222 (226)
76 COG1118 CysA ABC-type sulfate/ 100.0 7.5E-38 1.6E-42 336.4 17.6 203 590-813 2-232 (345)
77 TIGR02314 ABC_MetN D-methionin 100.0 3.4E-37 7.4E-42 353.8 22.6 201 591-808 2-230 (343)
78 cd03261 ABC_Org_Solvent_Resist 100.0 3.9E-37 8.5E-42 338.3 21.1 197 591-808 1-226 (235)
79 PRK11432 fbpC ferric transport 100.0 5E-37 1.1E-41 354.2 22.3 201 590-811 6-229 (351)
80 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.2E-36 2.7E-41 327.9 23.6 188 589-802 5-206 (207)
81 cd03260 ABC_PstB_phosphate_tra 100.0 4.5E-37 9.7E-42 336.1 19.8 197 591-806 1-227 (227)
82 COG1122 CbiO ABC-type cobalt t 100.0 4.9E-37 1.1E-41 332.7 19.7 199 590-808 3-228 (235)
83 PRK14269 phosphate ABC transpo 100.0 1E-36 2.2E-41 337.4 22.4 202 590-808 2-230 (246)
84 PRK13650 cbiO cobalt transport 100.0 1.2E-36 2.6E-41 342.6 22.3 201 590-808 4-229 (279)
85 TIGR00972 3a0107s01c2 phosphat 100.0 1.7E-36 3.6E-41 335.8 22.8 201 591-808 2-232 (247)
86 PRK14242 phosphate transporter 100.0 1.8E-36 3.8E-41 336.9 22.5 203 589-808 5-237 (253)
87 PRK13637 cbiO cobalt transport 100.0 1.3E-36 2.8E-41 343.5 21.7 205 590-808 2-234 (287)
88 cd03248 ABCC_TAP TAP, the Tran 100.0 2.1E-36 4.5E-41 330.6 22.4 203 588-797 9-226 (226)
89 TIGR03265 PhnT2 putative 2-ami 100.0 1.4E-36 3E-41 351.1 22.2 204 590-814 4-230 (353)
90 PRK13643 cbiO cobalt transport 100.0 1.6E-36 3.5E-41 342.9 22.2 203 591-808 2-233 (288)
91 cd03296 ABC_CysA_sulfate_impor 100.0 2.3E-36 5E-41 333.1 22.8 197 591-808 3-226 (239)
92 PRK09452 potA putrescine/sperm 100.0 2E-36 4.4E-41 351.4 23.4 201 589-810 13-236 (375)
93 PRK13634 cbiO cobalt transport 100.0 2.2E-36 4.8E-41 342.1 22.9 203 591-808 3-235 (290)
94 PRK14273 phosphate ABC transpo 100.0 3.4E-36 7.5E-41 334.7 23.9 203 589-808 6-238 (254)
95 PRK13647 cbiO cobalt transport 100.0 2E-36 4.4E-41 339.8 21.3 198 590-807 4-226 (274)
96 PRK11000 maltose/maltodextrin 100.0 2.6E-36 5.7E-41 351.4 22.9 198 590-808 3-223 (369)
97 cd03219 ABC_Mj1267_LivG_branch 100.0 2.3E-36 5E-41 332.4 21.2 197 591-808 1-232 (236)
98 PRK14250 phosphate ABC transpo 100.0 6.3E-36 1.4E-40 329.9 24.3 199 590-808 3-221 (241)
99 PRK10851 sulfate/thiosulfate t 100.0 3.6E-36 7.8E-41 347.7 23.4 198 591-809 3-227 (353)
100 TIGR03258 PhnT 2-aminoethylpho 100.0 2.7E-36 5.9E-41 349.2 22.3 200 589-809 4-229 (362)
101 cd03263 ABC_subfamily_A The AB 100.0 2.9E-36 6.2E-41 328.1 21.2 197 591-806 1-219 (220)
102 PRK13635 cbiO cobalt transport 100.0 5.6E-36 1.2E-40 337.0 23.8 200 590-808 5-229 (279)
103 TIGR00960 3a0501s02 Type II (G 100.0 2E-36 4.3E-41 328.5 19.2 188 591-797 2-216 (216)
104 TIGR02315 ABC_phnC phosphonate 100.0 4.1E-36 8.9E-41 331.9 21.9 197 591-807 2-234 (243)
105 PRK10744 pstB phosphate transp 100.0 7.9E-36 1.7E-40 332.9 24.2 203 589-808 12-244 (260)
106 cd03259 ABC_Carb_Solutes_like 100.0 3.1E-36 6.8E-41 326.2 20.2 190 591-801 1-213 (213)
107 cd03226 ABC_cobalt_CbiO_domain 100.0 2.9E-36 6.3E-41 324.5 19.8 187 592-798 1-205 (205)
108 cd03256 ABC_PhnC_transporter A 100.0 4.2E-36 9E-41 331.4 21.4 198 591-808 1-234 (241)
109 cd03293 ABC_NrtD_SsuB_transpor 100.0 3.3E-36 7.1E-41 327.7 20.0 196 591-803 1-218 (220)
110 PRK13646 cbiO cobalt transport 100.0 5.2E-36 1.1E-40 338.6 22.4 204 590-808 2-235 (286)
111 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.9E-36 6.3E-41 337.8 19.8 185 611-808 37-250 (269)
112 PRK14235 phosphate transporter 100.0 7.2E-36 1.6E-40 334.3 22.7 204 588-808 17-251 (267)
113 COG1124 DppF ABC-type dipeptid 100.0 5.8E-36 1.3E-40 314.5 20.5 209 590-815 3-238 (252)
114 cd03265 ABC_DrrA DrrA is the A 100.0 4E-36 8.6E-41 327.0 20.1 195 591-806 1-219 (220)
115 PRK14274 phosphate ABC transpo 100.0 7.4E-36 1.6E-40 333.0 22.7 202 590-808 12-243 (259)
116 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.4E-36 7.4E-41 327.1 19.2 190 591-797 1-218 (218)
117 PRK14251 phosphate ABC transpo 100.0 6.4E-36 1.4E-40 332.0 21.6 202 590-808 4-235 (251)
118 COG4615 PvdE ABC-type sideroph 100.0 2.8E-33 6E-38 307.1 41.6 499 266-800 4-529 (546)
119 PRK14239 phosphate transporter 100.0 8.2E-36 1.8E-40 331.3 22.1 202 590-808 5-236 (252)
120 PRK14245 phosphate ABC transpo 100.0 6.9E-36 1.5E-40 331.5 21.3 202 590-808 3-234 (250)
121 cd03247 ABCC_cytochrome_bd The 100.0 6.9E-36 1.5E-40 314.3 20.1 165 591-801 1-178 (178)
122 PRK11153 metN DL-methionine tr 100.0 7.2E-36 1.6E-40 345.0 22.0 201 591-808 2-230 (343)
123 PRK13651 cobalt transporter AT 100.0 1.1E-35 2.4E-40 337.8 23.0 203 591-808 3-254 (305)
124 PRK13640 cbiO cobalt transport 100.0 9.4E-36 2E-40 335.8 22.2 201 589-808 4-232 (282)
125 PRK13636 cbiO cobalt transport 100.0 1.2E-35 2.5E-40 335.2 22.7 199 590-808 5-231 (283)
126 cd03258 ABC_MetN_methionine_tr 100.0 1E-35 2.2E-40 326.7 21.5 201 591-808 2-230 (233)
127 PRK13644 cbiO cobalt transport 100.0 1.2E-35 2.6E-40 333.6 22.4 198 591-808 2-224 (274)
128 cd03268 ABC_BcrA_bacitracin_re 100.0 1.1E-35 2.3E-40 320.8 21.2 190 591-801 1-208 (208)
129 PRK11607 potG putrescine trans 100.0 1.2E-35 2.6E-40 345.6 23.0 202 589-811 18-242 (377)
130 PRK14237 phosphate transporter 100.0 1.3E-35 2.8E-40 332.3 22.5 204 588-808 18-251 (267)
131 cd03224 ABC_TM1139_LivF_branch 100.0 1.1E-35 2.4E-40 324.0 21.0 198 591-808 1-221 (222)
132 PRK14268 phosphate ABC transpo 100.0 1.2E-35 2.6E-40 331.1 21.5 203 589-808 11-242 (258)
133 PRK14249 phosphate ABC transpo 100.0 1.8E-35 3.9E-40 328.4 22.9 202 590-808 4-235 (251)
134 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.2E-35 2.6E-40 328.0 21.2 200 591-808 1-225 (242)
135 PRK14240 phosphate transporter 100.0 2E-35 4.4E-40 327.8 23.2 202 590-808 3-234 (250)
136 cd03264 ABC_drug_resistance_li 100.0 8.5E-36 1.8E-40 322.3 19.6 189 591-801 1-211 (211)
137 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.6E-35 3.4E-40 325.8 22.0 197 591-808 2-221 (236)
138 cd03301 ABC_MalK_N The N-termi 100.0 9.1E-36 2E-40 322.5 19.8 190 591-801 1-213 (213)
139 PRK13632 cbiO cobalt transport 100.0 1.4E-35 3E-40 332.8 21.7 201 589-808 6-231 (271)
140 cd03235 ABC_Metallic_Cations A 100.0 1.1E-35 2.3E-40 322.1 20.0 187 593-801 2-213 (213)
141 PRK11629 lolD lipoprotein tran 100.0 1.5E-35 3.3E-40 325.3 21.4 196 590-802 5-228 (233)
142 PRK14270 phosphate ABC transpo 100.0 2.1E-35 4.5E-40 327.9 22.7 202 590-808 4-235 (251)
143 PRK14248 phosphate ABC transpo 100.0 2.1E-35 4.6E-40 330.9 22.8 203 589-808 20-252 (268)
144 PRK14236 phosphate transporter 100.0 1.8E-35 3.8E-40 332.1 22.0 204 588-808 23-256 (272)
145 COG3638 ABC-type phosphate/pho 100.0 7.2E-36 1.6E-40 311.2 17.2 199 590-808 3-237 (258)
146 cd03266 ABC_NatA_sodium_export 100.0 1.6E-35 3.5E-40 321.8 20.8 194 591-801 2-218 (218)
147 PRK14244 phosphate ABC transpo 100.0 1.4E-35 3.1E-40 329.2 20.7 201 591-808 6-237 (251)
148 PRK14243 phosphate transporter 100.0 3E-35 6.6E-40 328.8 23.4 203 589-808 9-248 (264)
149 PRK14259 phosphate ABC transpo 100.0 3.3E-35 7.1E-40 329.3 23.7 204 588-808 11-253 (269)
150 PRK14247 phosphate ABC transpo 100.0 3.1E-35 6.8E-40 326.3 23.2 202 590-808 3-234 (250)
151 PRK14267 phosphate ABC transpo 100.0 2.5E-35 5.4E-40 327.6 22.4 202 590-808 4-237 (253)
152 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.2E-35 4.8E-40 319.1 21.3 188 591-801 1-211 (211)
153 PRK14261 phosphate ABC transpo 100.0 2.9E-35 6.3E-40 327.1 22.5 202 590-808 6-237 (253)
154 PRK13642 cbiO cobalt transport 100.0 3.2E-35 7E-40 330.7 23.1 201 590-808 4-229 (277)
155 PRK14238 phosphate transporter 100.0 2.9E-35 6.3E-40 330.0 22.6 203 589-808 23-255 (271)
156 TIGR03415 ABC_choXWV_ATP choli 100.0 2.1E-35 4.6E-40 342.1 22.0 192 611-815 37-261 (382)
157 cd03218 ABC_YhbG The ABC trans 100.0 2.1E-35 4.5E-40 324.0 20.9 197 591-808 1-222 (232)
158 PRK10247 putative ABC transpor 100.0 2.1E-35 4.5E-40 322.5 20.7 196 589-804 6-223 (225)
159 PRK09493 glnQ glutamine ABC tr 100.0 2.8E-35 6.2E-40 324.6 21.7 197 591-808 2-225 (240)
160 PRK11247 ssuB aliphatic sulfon 100.0 3.5E-35 7.6E-40 326.1 22.5 195 589-804 11-219 (257)
161 PRK13648 cbiO cobalt transport 100.0 3.6E-35 7.8E-40 329.1 22.8 200 590-808 7-231 (269)
162 PRK10619 histidine/lysine/argi 100.0 2.9E-35 6.4E-40 327.8 21.8 200 589-808 4-241 (257)
163 PRK13641 cbiO cobalt transport 100.0 3.4E-35 7.3E-40 332.1 22.5 204 590-808 2-234 (287)
164 TIGR02211 LolD_lipo_ex lipopro 100.0 2.5E-35 5.4E-40 320.9 20.7 191 591-798 2-220 (221)
165 PRK14253 phosphate ABC transpo 100.0 3.5E-35 7.7E-40 325.7 22.2 202 590-808 3-233 (249)
166 TIGR03411 urea_trans_UrtD urea 100.0 3.2E-35 6.9E-40 324.6 21.8 197 591-808 3-231 (242)
167 PRK13649 cbiO cobalt transport 100.0 2.8E-35 6.1E-40 332.0 21.7 203 591-808 3-234 (280)
168 cd03292 ABC_FtsE_transporter F 100.0 2E-35 4.3E-40 320.1 19.5 187 591-797 1-214 (214)
169 PRK14252 phosphate ABC transpo 100.0 4.5E-35 9.8E-40 327.7 23.0 203 589-808 15-249 (265)
170 PRK13645 cbiO cobalt transport 100.0 3.2E-35 6.9E-40 332.9 22.0 205 589-808 5-240 (289)
171 cd03223 ABCD_peroxisomal_ALDP 100.0 3E-35 6.6E-40 305.7 20.0 160 591-795 1-163 (166)
172 PRK14262 phosphate ABC transpo 100.0 3.4E-35 7.3E-40 326.0 21.6 202 590-808 3-234 (250)
173 PRK11831 putative ABC transpor 100.0 4.4E-35 9.5E-40 328.4 22.7 199 589-808 6-233 (269)
174 PRK11124 artP arginine transpo 100.0 4.8E-35 1E-39 323.2 22.6 197 591-808 3-230 (242)
175 PRK13633 cobalt transporter AT 100.0 5.3E-35 1.2E-39 329.5 23.3 204 590-808 4-233 (280)
176 PRK10070 glycine betaine trans 100.0 3.1E-35 6.7E-40 343.1 22.0 206 590-808 4-254 (400)
177 cd03269 ABC_putative_ATPase Th 100.0 3E-35 6.4E-40 317.8 19.9 190 591-801 1-210 (210)
178 PRK14254 phosphate ABC transpo 100.0 6.4E-35 1.4E-39 329.2 23.5 204 588-808 37-269 (285)
179 PRK14266 phosphate ABC transpo 100.0 4.3E-35 9.2E-40 325.2 21.7 202 590-808 3-234 (250)
180 TIGR03410 urea_trans_UrtE urea 100.0 2.3E-35 5E-40 323.2 19.2 198 591-808 1-221 (230)
181 PRK14264 phosphate ABC transpo 100.0 5.1E-35 1.1E-39 333.2 22.6 203 589-808 44-289 (305)
182 PRK13652 cbiO cobalt transport 100.0 6.9E-35 1.5E-39 328.1 23.4 199 590-808 3-227 (277)
183 PRK11264 putative amino-acid A 100.0 5.4E-35 1.2E-39 324.4 22.2 198 590-808 3-233 (250)
184 PRK10584 putative ABC transpor 100.0 6E-35 1.3E-39 319.5 22.1 194 589-800 5-227 (228)
185 PRK10575 iron-hydroxamate tran 100.0 5.2E-35 1.1E-39 327.2 21.8 199 589-808 10-237 (265)
186 PRK10771 thiQ thiamine transpo 100.0 9E-35 2E-39 319.0 23.4 195 591-808 2-219 (232)
187 PRK13537 nodulation ABC transp 100.0 5.1E-35 1.1E-39 332.9 22.2 199 589-808 6-227 (306)
188 PRK14271 phosphate ABC transpo 100.0 5.2E-35 1.1E-39 328.6 21.9 203 589-808 20-251 (276)
189 TIGR02673 FtsE cell division A 100.0 2.7E-35 6E-40 319.0 18.9 186 591-796 2-214 (214)
190 PRK11300 livG leucine/isoleuci 100.0 6.6E-35 1.4E-39 324.7 22.4 198 590-808 5-243 (255)
191 cd03257 ABC_NikE_OppD_transpor 100.0 3.7E-35 7.9E-40 321.1 19.9 195 591-801 2-228 (228)
192 PRK11231 fecE iron-dicitrate t 100.0 6.7E-35 1.4E-39 324.6 22.3 197 591-808 3-227 (255)
193 TIGR03005 ectoine_ehuA ectoine 100.0 6.8E-35 1.5E-39 324.0 22.3 197 591-808 1-236 (252)
194 PRK13639 cbiO cobalt transport 100.0 5.4E-35 1.2E-39 328.5 21.7 198 591-808 2-226 (275)
195 PRK14256 phosphate ABC transpo 100.0 8.4E-35 1.8E-39 323.2 23.0 203 589-808 3-236 (252)
196 TIGR01288 nodI ATP-binding ABC 100.0 7.4E-35 1.6E-39 331.9 22.8 199 589-808 3-224 (303)
197 cd03300 ABC_PotA_N PotA is an 100.0 5.4E-35 1.2E-39 320.7 20.8 197 591-808 1-220 (232)
198 cd03225 ABC_cobalt_CbiO_domain 100.0 3.8E-35 8.3E-40 317.2 19.2 186 592-796 1-211 (211)
199 PRK15079 oligopeptide ABC tran 100.0 8.3E-35 1.8E-39 333.8 23.0 216 589-816 7-259 (331)
200 TIGR02769 nickel_nikE nickel i 100.0 9.3E-35 2E-39 325.1 22.6 213 590-815 2-246 (265)
201 PRK14263 phosphate ABC transpo 100.0 1.4E-34 3E-39 322.7 23.5 203 589-808 7-245 (261)
202 cd03246 ABCC_Protease_Secretio 100.0 5.5E-35 1.2E-39 306.0 18.6 158 591-797 1-173 (173)
203 PRK14275 phosphate ABC transpo 100.0 1.1E-34 2.4E-39 327.6 22.4 204 588-808 37-270 (286)
204 PRK11614 livF leucine/isoleuci 100.0 1.3E-34 2.7E-39 318.9 22.3 203 590-808 5-226 (237)
205 PRK09536 btuD corrinoid ABC tr 100.0 8.4E-35 1.8E-39 339.7 22.0 198 590-808 3-228 (402)
206 PRK10895 lipopolysaccharide AB 100.0 1.2E-34 2.6E-39 319.8 22.1 198 590-808 3-226 (241)
207 PRK13638 cbiO cobalt transport 100.0 1.3E-34 2.7E-39 325.1 22.6 197 591-808 2-225 (271)
208 PRK10253 iron-enterobactin tra 100.0 1.4E-34 3E-39 323.7 22.6 200 588-808 5-233 (265)
209 PRK13548 hmuV hemin importer A 100.0 1.9E-34 4.2E-39 321.2 23.4 197 591-808 3-230 (258)
210 TIGR00968 3a0106s01 sulfate AB 100.0 1.1E-34 2.5E-39 319.1 21.3 197 591-808 1-220 (237)
211 TIGR01277 thiQ thiamine ABC tr 100.0 1.3E-34 2.8E-39 313.6 21.2 188 592-802 2-212 (213)
212 PRK14272 phosphate ABC transpo 100.0 2E-34 4.3E-39 320.3 23.2 202 590-808 4-236 (252)
213 PRK11144 modC molybdate transp 100.0 1.2E-34 2.6E-39 336.0 22.2 194 591-808 2-218 (352)
214 PRK09984 phosphonate/organopho 100.0 2.1E-34 4.6E-39 321.8 23.4 196 590-806 4-240 (262)
215 TIGR01978 sufC FeS assembly AT 100.0 1.5E-34 3.2E-39 319.5 21.8 197 591-807 1-233 (243)
216 TIGR03873 F420-0_ABC_ATP propo 100.0 1.3E-34 2.9E-39 322.4 21.4 197 591-808 2-226 (256)
217 cd03299 ABC_ModC_like Archeal 100.0 1.4E-34 3.1E-39 317.9 21.1 196 591-808 1-219 (235)
218 cd03262 ABC_HisP_GlnQ_permease 100.0 1E-34 2.2E-39 314.3 19.5 186 591-797 1-213 (213)
219 PRK14260 phosphate ABC transpo 100.0 2E-34 4.3E-39 321.4 22.4 202 590-808 7-243 (259)
220 PRK10908 cell division protein 100.0 1.4E-34 3E-39 315.3 20.5 189 591-799 2-217 (222)
221 PRK14255 phosphate ABC transpo 100.0 2.3E-34 5.1E-39 319.7 22.0 202 590-808 5-236 (252)
222 TIGR00955 3a01204 The Eye Pigm 100.0 1.8E-33 3.9E-38 349.2 32.4 197 610-808 37-256 (617)
223 TIGR03740 galliderm_ABC gallid 100.0 2.4E-34 5.2E-39 313.7 21.4 194 591-805 1-210 (223)
224 PRK13536 nodulation factor exp 100.0 1.8E-34 4E-39 331.8 21.5 199 589-808 40-261 (340)
225 PRK14265 phosphate ABC transpo 100.0 4.9E-34 1.1E-38 320.5 23.8 203 589-808 19-258 (274)
226 PRK11248 tauB taurine transpor 100.0 3.4E-34 7.4E-39 318.5 21.4 192 591-803 2-215 (255)
227 PRK10418 nikD nickel transport 100.0 8E-34 1.7E-38 315.6 24.1 200 590-808 4-230 (254)
228 TIGR03522 GldA_ABC_ATP gliding 100.0 3E-34 6.5E-39 326.4 21.1 197 591-808 3-221 (301)
229 PRK11701 phnK phosphonate C-P 100.0 5E-34 1.1E-38 318.1 22.3 202 590-808 6-241 (258)
230 PRK14241 phosphate transporter 100.0 4E-34 8.8E-39 318.8 21.2 202 590-808 4-242 (258)
231 PRK11022 dppD dipeptide transp 100.0 5.6E-34 1.2E-38 326.8 22.5 213 590-816 3-251 (326)
232 TIGR01188 drrA daunorubicin re 100.0 2.7E-34 5.9E-39 327.1 19.8 185 611-808 6-213 (302)
233 PRK14246 phosphate ABC transpo 100.0 7.7E-34 1.7E-38 316.0 23.0 203 589-808 9-241 (257)
234 PRK15112 antimicrobial peptide 100.0 8.4E-34 1.8E-38 317.7 23.3 207 590-808 4-239 (267)
235 PRK11308 dppF dipeptide transp 100.0 9.5E-34 2.1E-38 324.8 24.2 216 589-816 4-252 (327)
236 PRK09544 znuC high-affinity zi 100.0 6.7E-34 1.4E-38 315.1 21.9 197 590-808 4-209 (251)
237 PRK13546 teichoic acids export 100.0 1.1E-33 2.4E-38 315.1 23.5 216 589-818 3-241 (264)
238 PRK15056 manganese/iron transp 100.0 6E-34 1.3E-38 319.7 21.3 198 590-808 6-230 (272)
239 PRK09473 oppD oligopeptide tra 100.0 8.1E-34 1.8E-38 325.7 22.7 214 589-816 11-259 (330)
240 PRK10419 nikE nickel transport 100.0 7E-34 1.5E-38 318.4 21.6 212 590-814 3-246 (268)
241 PRK15093 antimicrobial peptide 100.0 7.5E-34 1.6E-38 326.7 22.4 213 590-816 3-256 (330)
242 PRK14258 phosphate ABC transpo 100.0 9.8E-34 2.1E-38 316.2 22.4 202 590-808 7-245 (261)
243 cd03234 ABCG_White The White s 100.0 5.3E-34 1.1E-38 311.6 19.3 199 590-801 3-226 (226)
244 TIGR02982 heterocyst_DevA ABC 100.0 6.2E-34 1.3E-38 309.8 19.5 190 591-797 2-219 (220)
245 cd03213 ABCG_EPDR ABCG transpo 100.0 8.6E-34 1.9E-38 302.5 19.7 175 590-801 3-194 (194)
246 PRK13547 hmuV hemin importer A 100.0 1.2E-33 2.6E-38 316.4 21.6 197 591-808 2-244 (272)
247 COG2884 FtsE Predicted ATPase 100.0 6.4E-34 1.4E-38 286.4 17.3 191 591-801 2-219 (223)
248 cd03230 ABC_DR_subfamily_A Thi 100.0 8.9E-34 1.9E-38 296.9 19.2 157 591-797 1-173 (173)
249 TIGR02142 modC_ABC molybdenum 100.0 8.8E-34 1.9E-38 329.2 21.0 191 595-808 4-221 (354)
250 cd03297 ABC_ModC_molybdenum_tr 100.0 1.4E-33 3.1E-38 305.6 20.3 183 595-801 5-214 (214)
251 COG1131 CcmA ABC-type multidru 100.0 2.3E-33 5E-38 316.5 22.0 199 590-808 4-226 (293)
252 TIGR02770 nickel_nikD nickel i 100.0 1.4E-33 3.1E-38 309.1 19.7 186 613-808 1-215 (230)
253 cd03232 ABC_PDR_domain2 The pl 100.0 1.6E-33 3.5E-38 299.9 19.0 173 590-801 3-192 (192)
254 cd03228 ABCC_MRP_Like The MRP 100.0 1.9E-33 4.1E-38 293.9 18.8 157 591-796 1-171 (171)
255 TIGR02323 CP_lyasePhnK phospho 100.0 4.5E-33 9.8E-38 309.5 22.8 202 590-808 3-238 (253)
256 COG4175 ProV ABC-type proline/ 100.0 9.8E-34 2.1E-38 304.4 16.5 214 590-815 4-261 (386)
257 cd03233 ABC_PDR_domain1 The pl 100.0 2.9E-33 6.3E-38 300.3 20.2 179 590-801 3-202 (202)
258 KOG0060 Long-chain acyl-CoA tr 100.0 6.2E-30 1.3E-34 293.7 46.3 447 332-794 136-641 (659)
259 cd03229 ABC_Class3 This class 100.0 3.7E-33 7.9E-38 293.6 18.4 158 591-796 1-178 (178)
260 CHL00131 ycf16 sulfate ABC tra 100.0 1.2E-32 2.6E-37 306.0 23.0 196 590-805 7-238 (252)
261 TIGR01184 ntrCD nitrate transp 100.0 4.5E-33 9.7E-38 305.0 19.2 180 614-806 1-202 (230)
262 cd03215 ABC_Carb_Monos_II This 100.0 4.3E-33 9.4E-38 294.1 18.0 158 590-797 4-182 (182)
263 PRK13545 tagH teichoic acids e 100.0 1.4E-32 3E-37 323.3 24.1 209 589-816 20-239 (549)
264 COG0410 LivF ABC-type branched 100.0 8.3E-33 1.8E-37 289.0 19.2 204 590-808 3-226 (237)
265 PRK15439 autoinducer 2 ABC tra 100.0 9.1E-33 2E-37 336.6 22.5 198 590-808 11-229 (510)
266 TIGR03608 L_ocin_972_ABC putat 100.0 5E-33 1.1E-37 299.5 17.9 179 593-792 1-206 (206)
267 PRK09580 sufC cysteine desulfu 100.0 2.7E-32 5.9E-37 302.4 21.4 198 591-807 2-234 (248)
268 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.8E-32 6E-37 292.4 20.4 171 591-807 1-192 (200)
269 PRK10261 glutathione transport 100.0 2.5E-32 5.4E-37 339.4 22.8 219 589-820 312-566 (623)
270 PRK13549 xylose transporter AT 100.0 1.9E-32 4.1E-37 333.9 21.2 198 590-808 5-232 (506)
271 PRK10762 D-ribose transporter 100.0 2E-32 4.3E-37 333.3 20.8 198 590-808 4-230 (501)
272 PRK09700 D-allose transporter 100.0 1.7E-32 3.8E-37 334.7 20.2 198 590-808 5-234 (510)
273 TIGR03771 anch_rpt_ABC anchore 100.0 2.2E-32 4.8E-37 298.1 18.6 177 618-808 1-201 (223)
274 cd03237 ABC_RNaseL_inhibitor_d 100.0 3.9E-32 8.5E-37 299.8 20.2 184 612-808 8-207 (246)
275 PRK03695 vitamin B12-transport 100.0 5.5E-32 1.2E-36 299.8 21.4 182 613-808 11-222 (248)
276 PRK13543 cytochrome c biogenes 100.0 6.1E-32 1.3E-36 292.9 21.1 185 589-794 10-212 (214)
277 COG4619 ABC-type uncharacteriz 100.0 6.3E-33 1.4E-37 273.0 12.0 178 610-799 15-214 (223)
278 PRK10261 glutathione transport 100.0 2.9E-32 6.2E-37 338.9 21.0 206 589-808 11-258 (623)
279 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2.6E-32 5.6E-37 297.7 17.3 190 591-801 23-224 (224)
280 PRK13540 cytochrome c biogenes 100.0 5.9E-32 1.3E-36 289.9 19.6 180 591-791 2-198 (200)
281 cd03231 ABC_CcmA_heme_exporter 100.0 8.4E-32 1.8E-36 288.9 20.8 181 591-792 1-198 (201)
282 cd03267 ABC_NatA_like Similar 100.0 3E-32 6.4E-37 299.7 17.5 178 611-801 34-236 (236)
283 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 9.3E-32 2E-36 330.8 23.8 205 590-808 4-248 (552)
284 PLN03211 ABC transporter G-25; 100.0 1E-31 2.3E-36 333.4 24.3 190 610-808 80-296 (659)
285 COG1123 ATPase components of v 100.0 8.5E-32 1.9E-36 315.4 21.6 219 588-818 278-529 (539)
286 PRK11819 putative ABC transpor 100.0 1.2E-31 2.5E-36 330.0 24.0 205 590-808 6-250 (556)
287 PRK13538 cytochrome c biogenes 100.0 1.1E-31 2.3E-36 288.8 20.7 181 591-792 2-202 (204)
288 PRK10982 galactose/methyl gala 100.0 5.8E-32 1.3E-36 328.6 20.6 193 594-807 2-222 (491)
289 PRK11288 araG L-arabinose tran 100.0 7.1E-32 1.5E-36 328.5 21.3 192 590-802 4-223 (501)
290 PRK13541 cytochrome c biogenes 100.0 8.2E-32 1.8E-36 287.6 19.0 178 591-790 2-193 (195)
291 TIGR03269 met_CoM_red_A2 methy 100.0 7.1E-32 1.5E-36 330.1 21.2 197 591-808 1-258 (520)
292 PRK10938 putative molybdenum t 100.0 7.7E-32 1.7E-36 327.5 21.3 196 591-808 4-224 (490)
293 COG4525 TauB ABC-type taurine 100.0 3.1E-32 6.6E-37 274.4 14.5 194 591-803 4-219 (259)
294 TIGR02633 xylG D-xylose ABC tr 100.0 7.4E-32 1.6E-36 328.5 20.8 197 591-807 2-229 (500)
295 cd03214 ABC_Iron-Siderophores_ 100.0 4.4E-32 9.5E-37 286.0 16.3 176 592-801 1-180 (180)
296 PRK13539 cytochrome c biogenes 100.0 1.2E-31 2.7E-36 288.9 20.2 182 591-794 3-200 (207)
297 cd03216 ABC_Carb_Monos_I This 100.0 1E-31 2.2E-36 278.5 18.4 159 591-799 1-162 (163)
298 PRK15064 ABC transporter ATP-b 100.0 2.4E-31 5.3E-36 325.9 24.3 195 591-808 2-242 (530)
299 PRK15134 microcin C ABC transp 100.0 1.3E-31 2.7E-36 328.4 21.5 206 590-808 275-515 (529)
300 PRK15134 microcin C ABC transp 100.0 1.2E-31 2.7E-36 328.5 21.4 205 590-808 5-246 (529)
301 TIGR03269 met_CoM_red_A2 methy 100.0 1.4E-31 2.9E-36 327.6 20.6 208 590-808 279-517 (520)
302 PRK13549 xylose transporter AT 100.0 1E-31 2.3E-36 327.4 18.5 201 590-807 259-493 (506)
303 PRK15177 Vi polysaccharide exp 100.0 1.3E-31 2.8E-36 289.8 17.2 184 613-808 2-192 (213)
304 TIGR02324 CP_lyasePhnL phospho 100.0 2.1E-31 4.7E-36 290.7 19.1 189 591-792 2-222 (224)
305 TIGR01187 potA spermidine/putr 100.0 1.5E-31 3.4E-36 306.9 18.1 169 628-809 1-191 (325)
306 COG4555 NatA ABC-type Na+ tran 100.0 1.5E-31 3.2E-36 271.4 15.0 198 591-808 2-222 (245)
307 TIGR01189 ccmA heme ABC export 100.0 4.1E-31 8.9E-36 282.9 19.3 178 591-790 1-196 (198)
308 PRK15064 ABC transporter ATP-b 100.0 7.7E-31 1.7E-35 321.5 23.5 198 589-808 318-525 (530)
309 TIGR01166 cbiO cobalt transpor 100.0 3.3E-31 7.1E-36 281.8 16.7 159 611-782 5-189 (190)
310 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 9.6E-31 2.1E-35 265.4 17.1 140 591-796 1-144 (144)
311 COG1123 ATPase components of v 100.0 1.3E-30 2.9E-35 305.5 20.6 213 590-817 5-253 (539)
312 COG0444 DppD ABC-type dipeptid 100.0 9.2E-31 2E-35 287.3 18.1 213 591-820 2-256 (316)
313 COG4181 Predicted ABC-type tra 100.0 7.4E-31 1.6E-35 259.2 15.1 194 590-799 6-226 (228)
314 TIGR01257 rim_protein retinal- 100.0 1.6E-30 3.5E-35 344.9 23.3 201 589-808 927-1149(2272)
315 PRK09700 D-allose transporter 100.0 7E-31 1.5E-35 320.6 18.4 192 590-803 265-493 (510)
316 COG4148 ModC ABC-type molybdat 100.0 3.8E-31 8.3E-36 279.9 13.8 179 617-808 18-218 (352)
317 COG4559 ABC-type hemin transpo 100.0 1.8E-30 3.9E-35 265.5 17.4 201 591-808 2-230 (259)
318 COG1137 YhbG ABC-type (unclass 100.0 1.8E-31 4E-36 270.4 9.5 204 590-808 4-228 (243)
319 PRK10535 macrolide transporter 100.0 2.8E-30 6E-35 322.2 21.8 201 590-807 4-231 (648)
320 TIGR02633 xylG D-xylose ABC tr 100.0 1.2E-30 2.6E-35 317.8 17.9 199 590-805 257-489 (500)
321 COG4598 HisP ABC-type histidin 100.0 9.1E-31 2E-35 260.0 13.3 200 589-809 5-242 (256)
322 TIGR00956 3a01205 Pleiotropic 100.0 2.9E-30 6.4E-35 343.3 22.3 203 590-805 759-990 (1394)
323 COG4161 ArtP ABC-type arginine 100.0 1.7E-30 3.6E-35 253.7 13.9 198 590-808 2-230 (242)
324 TIGR01257 rim_protein retinal- 100.0 5.6E-30 1.2E-34 339.8 22.7 202 588-808 1935-2159(2272)
325 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.3E-29 2.9E-34 311.8 24.4 198 589-808 321-531 (552)
326 PRK11288 araG L-arabinose tran 100.0 3E-30 6.6E-35 314.2 18.5 195 590-808 257-485 (501)
327 PLN03073 ABC transporter F fam 100.0 1.1E-29 2.3E-34 317.1 23.7 198 589-808 507-714 (718)
328 PRK11819 putative ABC transpor 100.0 1.7E-29 3.6E-34 310.9 24.6 198 589-808 323-533 (556)
329 PRK10762 D-ribose transporter 100.0 3E-30 6.6E-35 314.1 17.6 193 590-807 257-483 (501)
330 PRK10636 putative ABC transpor 100.0 1.5E-29 3.4E-34 314.7 23.7 199 588-808 310-517 (638)
331 cd03222 ABC_RNaseL_inhibitor T 100.0 1E-29 2.2E-34 265.4 17.6 145 594-799 4-152 (177)
332 COG4608 AppF ABC-type oligopep 100.0 1.3E-29 2.7E-34 273.0 17.8 198 590-818 4-209 (268)
333 PRK13409 putative ATPase RIL; 100.0 1.5E-29 3.3E-34 310.5 20.9 193 589-804 339-538 (590)
334 PRK11147 ABC transporter ATPas 100.0 3.4E-29 7.5E-34 312.3 23.9 199 588-808 317-528 (635)
335 cd03236 ABC_RNaseL_inhibitor_d 100.0 9.1E-30 2E-34 282.1 16.4 185 595-801 5-220 (255)
336 COG4172 ABC-type uncharacteriz 100.0 4.1E-29 9E-34 275.6 21.3 216 588-817 274-525 (534)
337 PRK15439 autoinducer 2 ABC tra 100.0 1.1E-29 2.3E-34 309.8 17.1 194 590-808 268-492 (510)
338 PRK10938 putative molybdenum t 100.0 1.6E-29 3.4E-34 307.4 17.8 192 589-800 259-484 (490)
339 cd03238 ABC_UvrA The excision 100.0 3E-29 6.4E-34 261.7 17.1 148 610-797 7-166 (176)
340 COG0411 LivG ABC-type branched 100.0 1.3E-29 2.9E-34 266.9 14.2 197 591-808 5-239 (250)
341 PRK10636 putative ABC transpor 100.0 9.4E-29 2E-33 307.7 23.5 196 591-808 2-236 (638)
342 COG1129 MglA ABC-type sugar tr 100.0 1.1E-28 2.3E-33 287.7 21.7 194 589-803 7-229 (500)
343 COG4604 CeuD ABC-type enteroch 100.0 1.6E-29 3.4E-34 255.5 10.7 197 591-808 2-225 (252)
344 PRK10982 galactose/methyl gala 100.0 6.9E-29 1.5E-33 301.7 18.3 200 589-806 249-478 (491)
345 PRK11147 ABC transporter ATPas 100.0 2.3E-28 5E-33 304.9 22.0 203 590-808 3-243 (635)
346 PLN03140 ABC transporter G fam 100.0 3.2E-28 7E-33 322.5 22.6 207 590-805 867-1107(1470)
347 COG3845 ABC-type uncharacteriz 100.0 5.9E-28 1.3E-32 275.4 18.2 190 589-799 3-220 (501)
348 cd00267 ABC_ATPase ABC (ATP-bi 100.0 9.9E-28 2.1E-32 247.2 16.9 140 593-796 2-157 (157)
349 COG0488 Uup ATPase components 99.9 4.2E-27 9.1E-32 281.7 21.6 206 590-808 3-240 (530)
350 TIGR00956 3a01205 Pleiotropic 99.9 1.6E-27 3.5E-32 317.3 19.3 189 611-808 74-300 (1394)
351 PLN03140 ABC transporter G fam 99.9 1.2E-27 2.6E-32 317.1 16.7 197 610-808 177-427 (1470)
352 COG1101 PhnK ABC-type uncharac 99.9 1.7E-27 3.6E-32 244.3 13.7 190 610-800 18-230 (263)
353 PRK13409 putative ATPase RIL; 99.9 1.7E-27 3.6E-32 292.5 16.3 177 596-795 79-287 (590)
354 COG1134 TagH ABC-type polysacc 99.9 7.4E-27 1.6E-31 246.7 18.5 185 611-808 40-236 (249)
355 COG1119 ModF ABC-type molybden 99.9 2.5E-27 5.5E-32 249.6 14.8 195 587-802 28-256 (257)
356 COG4136 ABC-type uncharacteriz 99.9 1.3E-26 2.8E-31 224.3 13.9 182 591-792 3-207 (213)
357 PLN03073 ABC transporter F fam 99.9 7.8E-26 1.7E-30 282.5 23.9 203 589-808 176-431 (718)
358 COG4167 SapF ABC-type antimicr 99.9 3.8E-26 8.2E-31 227.7 16.6 198 613-821 28-253 (267)
359 cd03270 ABC_UvrA_I The excisio 99.9 7.9E-26 1.7E-30 246.8 18.1 178 610-801 7-226 (226)
360 KOG0061 Transporter, ABC super 99.9 6.7E-26 1.4E-30 278.9 17.6 208 589-808 24-260 (613)
361 cd03271 ABC_UvrA_II The excisi 99.9 9E-26 2E-30 249.2 16.2 181 611-803 8-261 (261)
362 PF00005 ABC_tran: ABC transpo 99.9 2.4E-26 5.2E-31 231.0 10.2 122 614-749 1-137 (137)
363 COG4172 ABC-type uncharacteriz 99.9 3.1E-25 6.7E-30 245.1 19.7 214 589-819 5-258 (534)
364 COG0488 Uup ATPase components 99.9 1.4E-24 3.1E-29 260.1 25.8 200 587-808 318-525 (530)
365 COG4152 ABC-type uncharacteriz 99.9 9.7E-26 2.1E-30 235.3 12.9 202 590-808 2-219 (300)
366 KOG0064 Peroxisomal long-chain 99.9 2.1E-21 4.6E-26 220.3 44.3 447 331-792 170-681 (728)
367 COG4674 Uncharacterized ABC-ty 99.9 2.8E-24 6.1E-29 217.2 12.5 198 589-808 4-235 (249)
368 cd03278 ABC_SMC_barmotin Barmo 99.9 5.3E-24 1.2E-28 227.3 13.9 152 615-793 14-189 (197)
369 COG4107 PhnK ABC-type phosphon 99.9 6.4E-24 1.4E-28 210.2 12.7 214 590-818 6-251 (258)
370 COG0396 sufC Cysteine desulfur 99.9 1.8E-22 3.8E-27 210.6 21.6 197 591-808 4-233 (251)
371 COG4133 CcmA ABC-type transpor 99.9 4.9E-23 1.1E-27 208.3 12.8 163 610-785 14-195 (209)
372 COG4586 ABC-type uncharacteriz 99.9 5.6E-23 1.2E-27 218.1 10.0 187 611-808 37-246 (325)
373 cd03272 ABC_SMC3_euk Eukaryoti 99.9 1.3E-22 2.9E-27 224.2 13.4 169 623-793 23-234 (243)
374 cd03240 ABC_Rad50 The catalyti 99.9 2.4E-22 5.1E-27 215.9 13.2 153 617-795 17-199 (204)
375 cd03279 ABC_sbcCD SbcCD and ot 99.9 4.3E-22 9.4E-27 215.6 12.3 159 622-797 27-211 (213)
376 PRK00349 uvrA excinuclease ABC 99.9 1.7E-21 3.6E-26 247.0 17.8 94 714-808 824-927 (943)
377 cd03275 ABC_SMC1_euk Eukaryoti 99.9 4.4E-22 9.6E-27 220.4 11.0 167 625-793 24-232 (247)
378 KOG0927 Predicted transporter 99.9 4E-22 8.6E-27 228.4 10.8 201 588-808 387-596 (614)
379 cd03273 ABC_SMC2_euk Eukaryoti 99.9 7.1E-22 1.5E-26 219.5 12.3 172 623-796 25-247 (251)
380 COG4778 PhnL ABC-type phosphon 99.8 1.7E-21 3.8E-26 192.7 8.4 190 591-793 5-226 (235)
381 KOG0059 Lipid exporter ABCA1 a 99.8 5.6E-21 1.2E-25 245.2 13.6 200 589-808 563-787 (885)
382 PRK00635 excinuclease ABC subu 99.8 2.1E-20 4.5E-25 245.6 18.8 94 714-808 803-906 (1809)
383 PF00664 ABC_membrane: ABC tra 99.8 1.8E-17 3.9E-22 182.9 39.2 267 278-546 2-275 (275)
384 cd03239 ABC_SMC_head The struc 99.8 2.3E-20 4.9E-25 196.0 11.3 143 624-794 23-172 (178)
385 cd03274 ABC_SMC4_euk Eukaryoti 99.8 4E-21 8.7E-26 207.4 4.8 167 612-793 18-203 (212)
386 TIGR00630 uvra excinuclease AB 99.8 7.6E-20 1.6E-24 231.5 16.8 92 714-806 822-923 (924)
387 KOG0927 Predicted transporter 99.8 9.3E-20 2E-24 209.1 15.1 203 589-808 74-309 (614)
388 KOG0065 Pleiotropic drug resis 99.8 3.9E-20 8.6E-25 231.2 10.9 188 610-806 803-1019(1391)
389 COG1129 MglA ABC-type sugar tr 99.8 7.7E-19 1.7E-23 205.6 16.2 184 613-804 274-486 (500)
390 cd03276 ABC_SMC6_euk Eukaryoti 99.8 1E-18 2.2E-23 186.8 14.9 155 617-796 16-192 (198)
391 PF00664 ABC_membrane: ABC tra 99.8 9.7E-17 2.1E-21 177.0 28.6 210 943-1152 57-268 (275)
392 KOG0062 ATPase component of AB 99.8 3.1E-19 6.7E-24 203.8 8.7 196 588-808 78-285 (582)
393 COG1245 Predicted ATPase, RNas 99.8 2.9E-18 6.4E-23 192.7 15.6 168 612-793 355-530 (591)
394 KOG0066 eIF2-interacting prote 99.8 3.4E-18 7.3E-23 189.7 15.5 198 588-808 584-791 (807)
395 COG4138 BtuD ABC-type cobalami 99.8 2.3E-19 5.1E-24 178.4 4.4 183 614-808 15-221 (248)
396 KOG0062 ATPase component of AB 99.8 4.1E-18 9E-23 194.7 12.7 192 588-799 360-559 (582)
397 cd03280 ABC_MutS2 MutS2 homolo 99.7 7E-18 1.5E-22 181.0 9.5 141 617-800 21-171 (200)
398 COG3845 ABC-type uncharacteriz 99.7 1E-16 2.2E-21 184.0 18.0 207 587-805 254-489 (501)
399 cd03277 ABC_SMC5_euk Eukaryoti 99.7 1.6E-16 3.5E-21 171.8 14.8 175 618-796 19-211 (213)
400 KOG2355 Predicted ABC-type tra 99.7 2.7E-16 5.8E-21 160.5 15.0 200 587-808 10-237 (291)
401 cd01128 rho_factor Transcripti 99.7 3.7E-17 8.1E-22 179.7 9.6 186 618-817 11-225 (249)
402 COG0178 UvrA Excinuclease ATPa 99.7 1.3E-15 2.8E-20 182.4 21.9 94 714-808 816-919 (935)
403 cd03227 ABC_Class2 ABC-type Cl 99.7 1.5E-16 3.1E-21 165.0 10.7 133 617-794 15-155 (162)
404 PRK00635 excinuclease ABC subu 99.7 7.2E-16 1.6E-20 203.4 17.5 99 708-808 1688-1796(1809)
405 cd03241 ABC_RecN RecN ATPase i 99.6 9.8E-16 2.1E-20 172.6 14.2 76 720-796 170-249 (276)
406 KOG0065 Pleiotropic drug resis 99.6 2.5E-16 5.5E-21 197.6 10.2 196 611-808 128-351 (1391)
407 KOG0058 Peptide exporter, ABC 99.6 5.1E-14 1.1E-18 168.6 28.0 220 927-1150 188-412 (716)
408 TIGR00958 3a01208 Conjugate Tr 99.6 8.1E-14 1.7E-18 176.9 30.8 215 930-1150 204-425 (711)
409 COG1245 Predicted ATPase, RNas 99.6 6.8E-16 1.5E-20 173.9 9.8 159 620-793 97-287 (591)
410 TIGR02203 MsbA_lipidA lipid A 99.6 1.1E-12 2.3E-17 163.4 31.5 224 930-1153 57-281 (571)
411 cd03242 ABC_RecF RecF is a rec 99.6 3.1E-14 6.7E-19 159.9 16.0 88 706-797 165-269 (270)
412 cd03243 ABC_MutS_homologs The 99.6 2.6E-15 5.7E-20 161.4 6.3 152 616-805 22-176 (202)
413 COG2401 ABC-type ATPase fused 99.6 1.3E-14 2.9E-19 161.5 11.8 176 611-798 396-588 (593)
414 cd03285 ABC_MSH2_euk MutS2 hom 99.5 2.2E-15 4.7E-20 163.9 4.3 151 611-801 17-174 (222)
415 TIGR02868 CydC thiol reductant 99.5 2.4E-12 5.2E-17 158.7 31.0 212 938-1149 64-277 (529)
416 PRK10790 putative multidrug tr 99.5 3.8E-12 8.2E-17 159.0 31.5 213 933-1149 71-288 (592)
417 TIGR01193 bacteriocin_ABC ABC- 99.5 3.9E-12 8.4E-17 162.1 31.6 266 877-1151 144-420 (708)
418 TIGR00630 uvra excinuclease AB 99.5 4.8E-14 1E-18 179.3 12.8 94 714-808 481-583 (924)
419 PRK00349 uvrA excinuclease ABC 99.5 4.2E-14 9.2E-19 180.1 11.9 94 714-808 483-585 (943)
420 TIGR03796 NHPM_micro_ABC1 NHPM 99.5 7.1E-12 1.5E-16 159.8 31.7 221 930-1151 197-418 (710)
421 PRK11174 cysteine/glutathione 99.5 5.6E-12 1.2E-16 157.4 30.1 193 930-1122 66-258 (588)
422 cd03283 ABC_MutS-like MutS-lik 99.5 2.4E-14 5.3E-19 153.2 7.7 132 617-785 19-153 (199)
423 TIGR02857 CydD thiol reductant 99.5 6.8E-12 1.5E-16 154.7 30.2 217 929-1149 46-267 (529)
424 TIGR01846 type_I_sec_HlyB type 99.5 1.2E-11 2.5E-16 157.3 31.8 216 930-1150 182-402 (694)
425 TIGR01192 chvA glucan exporter 99.5 1.4E-11 3E-16 153.4 31.7 195 953-1149 82-279 (585)
426 PRK11160 cysteine/glutathione 99.5 1.2E-11 2.6E-16 153.7 31.0 214 933-1146 66-280 (574)
427 TIGR03797 NHPM_micro_ABC2 NHPM 99.5 1.3E-11 2.8E-16 156.7 31.3 216 930-1150 179-399 (686)
428 COG4170 SapD ABC-type antimicr 99.5 1.1E-13 2.3E-18 141.7 9.2 191 612-815 21-255 (330)
429 TIGR02204 MsbA_rel ABC transpo 99.5 2.6E-11 5.6E-16 151.2 31.4 220 930-1149 61-281 (576)
430 PRK13657 cyclic beta-1,2-gluca 99.4 4.4E-11 9.4E-16 149.4 31.8 197 953-1149 82-279 (588)
431 PRK11176 lipid transporter ATP 99.4 5.2E-11 1.1E-15 148.6 31.2 212 934-1149 72-288 (582)
432 KOG0066 eIF2-interacting prote 99.4 2.3E-13 5E-18 151.7 8.8 202 590-807 264-498 (807)
433 PRK10789 putative multidrug tr 99.4 4.2E-11 9E-16 148.8 28.3 222 929-1150 38-261 (569)
434 TIGR03375 type_I_sec_LssB type 99.4 8.3E-11 1.8E-15 149.6 31.3 211 932-1150 192-409 (694)
435 TIGR01194 cyc_pep_trnsptr cycl 99.4 9E-11 2E-15 145.3 30.8 172 932-1104 58-231 (555)
436 PF02463 SMC_N: RecF/RecN/SMC 99.4 1.2E-12 2.7E-17 142.5 12.4 155 618-792 20-211 (220)
437 cd03282 ABC_MSH4_euk MutS4 hom 99.4 1.5E-12 3.3E-17 139.7 11.1 141 610-786 15-157 (204)
438 TIGR00606 rad50 rad50. This fa 99.3 3.1E-12 6.7E-17 172.0 12.0 117 670-792 1153-1288(1311)
439 cd03284 ABC_MutS1 MutS1 homolo 99.3 4E-12 8.8E-17 137.9 9.2 152 611-806 18-179 (216)
440 COG1132 MdlB ABC-type multidru 99.3 6.5E-10 1.4E-14 138.3 29.7 219 929-1149 54-275 (567)
441 PRK10522 multidrug transporter 99.3 7E-10 1.5E-14 137.3 28.9 170 933-1104 54-226 (547)
442 COG2274 SunT ABC-type bacterio 99.3 1.1E-09 2.4E-14 136.6 30.4 213 930-1149 197-416 (709)
443 smart00534 MUTSac ATPase domai 99.3 5.3E-12 1.1E-16 133.8 5.9 123 626-788 2-130 (185)
444 KOG0063 RNAse L inhibitor, ABC 99.2 2.7E-11 5.9E-16 136.0 11.1 185 611-808 349-548 (592)
445 TIGR02858 spore_III_AA stage I 99.2 1.5E-11 3.2E-16 137.1 8.0 142 624-807 112-268 (270)
446 TIGR00954 3a01203 Peroxysomal 99.2 1.9E-09 4.2E-14 135.7 27.0 227 895-1122 100-334 (659)
447 PHA02562 46 endonuclease subun 99.2 2E-11 4.4E-16 151.6 8.0 92 705-798 447-556 (562)
448 cd00820 PEPCK_HprK Phosphoenol 99.2 1.9E-11 4E-16 116.2 5.9 63 611-682 2-78 (107)
449 cd03281 ABC_MSH5_euk MutS5 hom 99.2 8.8E-11 1.9E-15 127.2 11.4 129 617-786 21-160 (213)
450 TIGR01069 mutS2 MutS2 family p 99.1 1.5E-10 3.3E-15 146.2 11.9 150 590-782 295-447 (771)
451 TIGR01842 type_I_sec_PrtD type 99.1 1.5E-08 3.3E-13 125.5 29.0 217 929-1151 48-266 (544)
452 PRK13695 putative NTPase; Prov 99.1 1.8E-10 3.9E-15 120.9 7.3 153 625-800 2-156 (174)
453 PRK00409 recombination and DNA 99.0 2.3E-09 5E-14 136.0 15.0 133 617-785 320-455 (782)
454 TIGR00634 recN DNA repair prot 99.0 7.4E-10 1.6E-14 137.0 9.1 77 719-796 439-519 (563)
455 PRK10869 recombination and rep 99.0 9.1E-10 2E-14 135.0 9.2 76 720-796 430-509 (553)
456 KOG0063 RNAse L inhibitor, ABC 99.0 4.9E-10 1.1E-14 126.1 5.3 159 621-793 98-287 (592)
457 cd03287 ABC_MSH3_euk MutS3 hom 98.9 1.6E-09 3.5E-14 117.6 8.8 135 611-784 18-158 (222)
458 PTZ00132 GTP-binding nuclear p 98.9 1.9E-09 4.2E-14 117.0 6.7 39 724-762 156-199 (215)
459 cd01124 KaiC KaiC is a circadi 98.8 2.8E-08 6.2E-13 105.1 12.7 141 626-793 2-163 (187)
460 COG0178 UvrA Excinuclease ATPa 98.8 3.6E-08 7.9E-13 119.5 12.0 138 671-810 427-579 (935)
461 PRK01156 chromosome segregatio 98.8 1.4E-08 3E-13 133.1 9.1 76 717-793 798-883 (895)
462 PRK07721 fliI flagellum-specif 98.7 7.6E-08 1.6E-12 114.2 13.8 166 617-805 152-340 (438)
463 PRK08533 flagellar accessory p 98.7 1.6E-07 3.4E-12 103.1 13.6 144 619-793 20-184 (230)
464 PRK03918 chromosome segregatio 98.7 2.6E-08 5.7E-13 130.5 8.8 75 718-793 786-867 (880)
465 cd01131 PilT Pilus retraction 98.7 2.5E-08 5.5E-13 106.9 7.0 119 625-793 3-122 (198)
466 TIGR02788 VirB11 P-type DNA tr 98.7 3.4E-08 7.4E-13 113.2 7.7 143 617-808 138-281 (308)
467 COG4988 CydD ABC-type transpor 98.6 1.3E-05 2.7E-10 95.8 28.3 199 929-1132 42-245 (559)
468 TIGR00618 sbcc exonuclease Sbc 98.6 6.4E-08 1.4E-12 128.3 9.7 77 718-795 948-1036(1042)
469 cd01120 RecA-like_NTPases RecA 98.6 4.1E-07 8.8E-12 93.2 12.9 129 625-783 1-140 (165)
470 PRK00064 recF recombination pr 98.6 9.4E-08 2E-12 111.9 8.5 76 719-797 272-359 (361)
471 cd03286 ABC_MSH6_euk MutS6 hom 98.6 7.3E-08 1.6E-12 104.5 6.9 137 611-785 17-158 (218)
472 PRK13830 conjugal transfer pro 98.6 2.7E-07 5.8E-12 118.7 13.0 68 735-803 649-728 (818)
473 TIGR02168 SMC_prok_B chromosom 98.6 5.3E-08 1.2E-12 131.5 7.0 76 716-792 1085-1164(1179)
474 smart00382 AAA ATPases associa 98.6 8.9E-07 1.9E-11 87.5 13.6 119 622-779 1-125 (148)
475 PRK06067 flagellar accessory p 98.5 8.7E-07 1.9E-11 97.7 13.4 148 619-793 21-186 (234)
476 PF13304 AAA_21: AAA domain; P 98.5 2.1E-07 4.5E-12 102.1 7.8 63 720-783 236-302 (303)
477 PRK06793 fliI flagellum-specif 98.5 5.7E-07 1.2E-11 106.0 10.6 152 614-803 147-306 (432)
478 TIGR00101 ureG urease accessor 98.5 4.9E-08 1.1E-12 104.7 1.5 100 625-725 3-108 (199)
479 COG4987 CydC ABC-type transpor 98.4 0.00018 3.8E-09 85.0 30.1 197 954-1150 85-284 (573)
480 TIGR02169 SMC_prok_A chromosom 98.4 3.8E-07 8.3E-12 123.2 7.8 76 717-793 1071-1150(1164)
481 PRK10246 exonuclease subunit S 98.3 8.2E-07 1.8E-11 117.3 8.9 76 718-794 947-1032(1047)
482 TIGR01420 pilT_fam pilus retra 98.3 9.1E-07 2E-11 103.0 6.6 123 620-792 119-242 (343)
483 PRK02224 chromosome segregatio 98.3 1.1E-06 2.4E-11 115.2 7.9 75 719-794 780-868 (880)
484 PRK12369 putative transporter; 98.3 0.0086 1.9E-07 69.1 38.5 224 337-572 82-321 (326)
485 TIGR03238 dnd_assoc_3 dnd syst 98.3 8.1E-07 1.7E-11 104.3 5.1 47 611-660 19-67 (504)
486 PF09818 ABC_ATPase: Predicted 98.2 1.1E-05 2.5E-10 93.4 13.4 154 618-796 240-415 (448)
487 TIGR00767 rho transcription te 98.2 4.2E-06 9.2E-11 96.9 9.3 101 553-668 97-209 (415)
488 TIGR00611 recf recF protein. A 98.2 2.4E-06 5.3E-11 100.0 6.6 62 720-784 275-345 (365)
489 PRK11098 microcin B17 transpor 98.1 0.02 4.4E-07 67.6 37.5 224 338-573 158-396 (409)
490 PRK06995 flhF flagellar biosyn 98.1 3.6E-06 7.8E-11 100.7 6.2 144 619-779 252-401 (484)
491 cd02023 UMPK Uridine monophosp 98.1 3.5E-06 7.6E-11 90.3 5.3 108 625-755 1-115 (198)
492 cd01125 repA Hexameric Replica 98.1 5.3E-06 1.2E-10 91.7 6.8 129 623-781 1-160 (239)
493 COG3910 Predicted ATPase [Gene 98.0 4.6E-05 9.9E-10 78.5 12.1 167 618-806 33-214 (233)
494 PRK14079 recF recombination pr 98.0 8.5E-06 1.8E-10 95.1 7.9 76 720-801 263-347 (349)
495 PF13748 ABC_membrane_3: ABC t 98.0 0.016 3.5E-07 62.6 30.7 179 266-457 1-180 (237)
496 cd01130 VirB11-like_ATPase Typ 98.0 9.1E-06 2E-10 86.4 6.4 43 617-660 19-61 (186)
497 PRK10733 hflB ATP-dependent me 98.0 3.1E-06 6.7E-11 106.3 2.8 162 447-648 36-210 (644)
498 PRK01889 GTPase RsgA; Reviewed 98.0 1E-05 2.2E-10 94.6 6.8 81 618-699 190-285 (356)
499 TIGR02655 circ_KaiC circadian 98.0 2.8E-06 6.1E-11 103.4 2.1 139 620-793 18-190 (484)
500 PF06472 ABC_membrane_2: ABC t 98.0 0.02 4.3E-07 65.0 32.9 199 280-482 32-237 (281)
No 1
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9.5e-204 Score=1906.10 Aligned_cols=944 Identities=37% Similarity=0.645 Sum_probs=855.9
Q ss_pred CCCcccCCh--hHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhccc---CCCChHHHHHHHHHH
Q 001091 201 ISTFASAGV--LSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQKT---DATSLPQVIIHAVWK 275 (1159)
Q Consensus 201 ~~p~~~a~~--~s~~~F~W~~pl~~~G~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~---~~~sl~~~l~~~~~~ 275 (1159)
++|.+.++. +|+++|||++|++++|||++|+.+|+|+++++|+++.+.++|+++|+++.+ ++|+++++++++||+
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~~~~psl~~al~~~f~~ 201 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRSGKKPSLLRALLRTFGR 201 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHH
Confidence 344555555 999999999999999999999999999999999999999999999998843 358999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 276 SLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTV 355 (1159)
Q Consensus 276 ~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~riR~~L~~ 355 (1159)
+++..++++++.+...+++|.+++.+|+|+++++. ..+. ||+++++++++.++++++.++|+|..+++|+|+|+++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~-~~~~-g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~ 279 (1381)
T KOG0054|consen 202 TFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRL-PLNN-GYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALIS 279 (1381)
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCc-ccch-hHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHH
Confidence 99999999999999999999999999999988743 4455 999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHH
Q 001091 356 LIYKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSN 432 (1159)
Q Consensus 356 ~iy~K~L~ls~~~~---~~G~i~nlms~D~~~i~~~~~~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l~~~i~~~~~~ 432 (1159)
+||+|+|++++.++ +.|+|+|+|++|++|+.++..++|.+|.+|+|+++++++||.++| +++++|++++++++|+|
T Consensus 280 ~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG-~sa~~G~~~~il~~p~n 358 (1381)
T KOG0054|consen 280 AIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLG-PSALAGVAVMVLLIPLN 358 (1381)
T ss_pred HHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHH
Confidence 99999999998875 899999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 433 TPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLV 512 (1159)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~~~lv 512 (1159)
.+++++++++|++.|+.+|+|++.|+|+|+|||+||+||||+.|.++|+++|++|+++++|..+..+++.+.++++|+++
T Consensus 359 ~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv 438 (1381)
T KOG0054|consen 359 SFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLV 438 (1381)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCCCCCCcc
Q 001091 513 SVITFGVCI-LLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QKKPITEPTSKASDVA 590 (1159)
Q Consensus 513 ~~~~f~~~~-~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e-~~~~~~~~~~~~~~~~ 590 (1159)
++++|++|+ ..++.+|+.++|+++++|++|+.|+.++|..++.+.|++||++|+++||..+| +++...+.+.++.+.+
T Consensus 439 ~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~ 518 (1381)
T KOG0054|consen 439 SVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENA 518 (1381)
T ss_pred HHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCce
Confidence 999999999 67889999999999999999999999999999999999999999999999999 5544443344445668
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCC
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW 669 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pw 669 (1159)
|+++|++|+|++. ++.|+|+| |++||+|+++||||+|||||||||++|||||++.+|++ .++|++|||||+||
T Consensus 519 i~i~~~sfsW~~~-----~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v-~v~gsiaYv~Q~pW 592 (1381)
T KOG0054|consen 519 IEIKNGSFSWDSE-----SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSV-AVNGSVAYVPQQPW 592 (1381)
T ss_pred EEEeeeeEecCCC-----CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceE-EEcCeEEEeccccH
Confidence 9999999999975 45679999 99999999999999999999999999999999999999 99999999999999
Q ss_pred CCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q 001091 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (1159)
Q Consensus 670 i~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~S 749 (1159)
||||||||||+||+|||++||++|++||+|++|++.||+||+|+|||||+||||||||||+||||+|+|+||||||||+|
T Consensus 593 I~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplS 672 (1381)
T KOG0054|consen 593 IQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLS 672 (1381)
T ss_pred hhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHHHhhcchHHHHHHHHhhhcccCCC
Q 001091 750 AVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN 829 (1159)
Q Consensus 750 ALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~~l~~~~~~~~~~~~ 829 (1159)
|||+||++|||++|++|.+++||||+|||++++|++||+|++|+||+|.++|+|+||++ .+..|.++.++...+.....
T Consensus 673 AVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~-~~~~~~~l~~~~~~~~~~~~ 751 (1381)
T KOG0054|consen 673 AVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK-SGGDFAELAHEEESEQEEEA 751 (1381)
T ss_pred hhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh-cchhHHHHhhccchhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999998 88899988433222111100
Q ss_pred CCCcccc-cccCcccccchhhhhcc-CCCccCC-CCCC-CccchhhcCcchHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 001091 830 PPQEDKC-LSRVPCQMSQITEERFA-RPISCGE-FSGR-SQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQA 905 (1159)
Q Consensus 830 ~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~-~~~e~~~~G~v~~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~ 905 (1159)
+....+. ..+...+.+.....+.. ++....+ ..++ +++|+|+.|+|+|++|++|+++++|+..++++++++++.++
T Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~ 831 (1381)
T KOG0054|consen 752 SEKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQV 831 (1381)
T ss_pred ccccccccccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 0000000 00000000000000000 0101111 1223 67888999999999999999997777777777888999999
Q ss_pred HHhccchheeecccccc--c---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc
Q 001091 906 LQMGSNYWIAWATDEKR--K---VSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDS 980 (1159)
Q Consensus 906 ~~~~~~~wl~~w~~~~~--~---~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~ 980 (1159)
+++++||||++|+++.. . .+..+|+++|++++++++++.++|++.+..+|++||++||++|+++|+||||+|||+
T Consensus 832 ~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdt 911 (1381)
T KOG0054|consen 832 LQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT 911 (1381)
T ss_pred HHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCC
Confidence 99999999999995321 1 356789999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 001091 981 TPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGT 1060 (1159)
Q Consensus 981 tp~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~i~vi~~~~~~~~~~~iPl~~~~~~~q~~Yl~tsReLkRL~~~ 1060 (1159)
||+||||||||||++.||..+|..+..++.++++++++++++++++|+++++++|+.++|+++|+||+++||||||||++
T Consensus 912 TP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesi 991 (1381)
T KOG0054|consen 912 TPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESI 991 (1381)
T ss_pred CCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHhcchhhhhhccchHHHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 001091 1061 RKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAI 1140 (1159)
Q Consensus 1061 srSPi~shf~Etl~Gl~tIRAf~~e~~f~~~~~~~lD~~~~~~~~~~~~~rWL~~rldll~~~~~~~~~~~~v~~~~~~~ 1140 (1159)
+|||+|+||+||++|++||||||+|++|.++|++++|.|++++|+..++||||++|+|++|+++++++++++++.+.+.+
T Consensus 992 tRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~ 1071 (1381)
T KOG0054|consen 992 TRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLI 1071 (1381)
T ss_pred ccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997766546
Q ss_pred CHHHHH---HHHHHhcc
Q 001091 1141 DPSKFL---QLFISISP 1154 (1159)
Q Consensus 1141 ~~g~v~---~~~~~is~ 1154 (1159)
+||.|+ +..++++.
T Consensus 1072 ~~g~vGLslsyal~lt~ 1088 (1381)
T KOG0054|consen 1072 SPGLVGLSLSYALQLTG 1088 (1381)
T ss_pred CcchHHHHHHHHHHHHH
Confidence 776655 55555543
No 2
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.4e-152 Score=1515.11 Aligned_cols=1092 Identities=26% Similarity=0.405 Sum_probs=886.1
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHhhccCCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHH--------Hhhccccccc
Q 001091 12 ADKVLESVNVAFFIGLFTRLWIEILKRRRDDGYILMARRAAGLVIVLCNVLIFILYMGFGFY--------EYWNFRIVSF 83 (1159)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 83 (1159)
-|-++.++..++++++....+....+..+..++... ..+.+..+++++++.++..+++.+. +.. +....+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 111 (1622)
T PLN03130 34 TDSLVINISHLVLLGLCLYRIWLIKKDHKVQRFCLR-SKWYNYFLALLAAYCTAEPLFRLVMGISVLNLDGQT-SLPPFE 111 (1622)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhccccccCCcccc-chHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc-ccccch
Confidence 355666777777766665555443221122233322 3357888888888888888877544 111 111112
Q ss_pred hh-H----HHHHHHHHHHHHHHHhhhhcccCcccccchhHHHHHHHH---HHHHHHHHHHHHHHHHhhcCCCCccchhHH
Q 001091 84 KS-V----SLVVTWALATVVALCSRYYRTLGEHKRWPLVLVLWWVVH---LVIVLVCVSVYLLTHLSSIGLPHILPEAKA 155 (1159)
Q Consensus 84 ~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1159)
.. + +..++++++..+...++++ |. ++++.+++||++. +++... ........+... ...+..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~ 180 (1622)
T PLN03130 112 IVSLIVEALTWCSMLVMIGVETKIYIR---EF--RWYVRFAVIYVLVGDAVMLNLV----LSVKEYYSSFVL--YLYISE 180 (1622)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHh---cC--CCcceeehhHHHhhHHHHHHHH----HHHHHHHhcccc--ceehhH
Confidence 22 1 1234444444433444444 33 8899999999988 554221 122222222100 112222
Q ss_pred HHHHHHHHHHHHhcccccccccCCCCCCCCCCCCcc------ccchhhccCCCCcccCChhHHHHHHhHHHHHHhhccCC
Q 001091 156 VDFVSLPLLVLLCFNATYACCCARDPSDLDIPLLRE------EDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQK 229 (1159)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~------~~~~~~~~~~~p~~~a~~~s~~~F~W~~pl~~~G~~~~ 229 (1159)
+.+.+.+.++.+... +|..+. ....|...+ .+..+..++++||++||+|||++|+|++|++++|||++
T Consensus 181 ~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~F~W~~pl~~~g~~~~ 254 (1622)
T PLN03130 181 VAAQVLFGILLLVYF----PNLDPY--PGYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIFFGWMTPLMQLGYKRP 254 (1622)
T ss_pred HHHHHHHHHHHHHHH----hcCCCC--cccccccccccccccccCCcccCCCCcccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 222222111110011 122221 001110000 01112346779999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHhccc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001091 230 LELLHIPPIPQSETANDASSLLEESLRKQKT-DATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGK 308 (1159)
Q Consensus 230 L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~-~~~sl~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~ 308 (1159)
|+.+|||+|+++|+++.+.++|++.|+++.+ ++|+|+++++++|++.++.+++++++.+++.+++|++++.+++++.++
T Consensus 255 L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~ 334 (1622)
T PLN03130 255 LTEKDVWKLDTWDQTETLYRSFQKCWDEELKKPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNG 334 (1622)
T ss_pred CChhhccCCChhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999998743 568999999999999999999999999999999999999999999764
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC---ChHHHHHHHHHHHHHH
Q 001091 309 HDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SSGIIINMINVDVERI 385 (1159)
Q Consensus 309 ~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~riR~~L~~~iy~K~L~ls~~~~---~~G~i~nlms~D~~~i 385 (1159)
+. .+. ++.+++++++..++.+++.++|++...+++.++|+.+...+|+|.++++.... ++|+++|+|++|++++
T Consensus 335 ~~--~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i 411 (1622)
T PLN03130 335 EP--AWI-GYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEAL 411 (1622)
T ss_pred Cc--chH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHH
Confidence 42 344 77777777777777777888888888999999999999999999999986543 7899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q 001091 386 GDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMR 465 (1159)
Q Consensus 386 ~~~~~~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik 465 (1159)
.+++..+|.+|..|+++++++++||..+| ++++++++++++++|++..+++++++.+++.++.+|+|.+.++|+++|||
T Consensus 412 ~~~~~~l~~l~~~pl~ii~~~~lL~~~lg-~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~ 490 (1622)
T PLN03130 412 QQICQQLHTLWSAPFRIIIAMVLLYQQLG-VASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMD 490 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 88888888888999999999999999999999999999999999999999
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHH
Q 001091 466 VLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEP 545 (1159)
Q Consensus 466 ~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~p 545 (1159)
+||+||||+.|.+++++.|++|++..++..+..++..++....|.++++++|++|.+.++++|++.+|+++++++.+..|
T Consensus 491 ~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~p 570 (1622)
T PLN03130 491 TVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFP 570 (1622)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888887777777788888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCc
Q 001091 546 IYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGS 624 (1159)
Q Consensus 546 l~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~ 624 (1159)
+..+|..+..+.++++|++||++|++.+|..+... .+.......|+++|++|+|+++ +++++|+| |+++++||
T Consensus 571 l~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~-~~~~~~~~~I~~~nvsf~y~~~-----~~~~vL~~inl~i~~Ge 644 (1622)
T PLN03130 571 LFMLPNLITQAVNANVSLKRLEELLLAEERVLLPN-PPLEPGLPAISIKNGYFSWDSK-----AERPTLSNINLDVPVGS 644 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC-CcccCCCCceEEEeeEEEccCC-----CCCceeeceeEEecCCC
Confidence 99999999999999999999999998766321111 1111123469999999999854 34679999 99999999
Q ss_pred EEEEEcCCCCChhHHHHHHhCCccCCC-CcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHH
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIPRIS-GAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDI 703 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~~~~-G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl 703 (1159)
+++||||+|||||||+++|+||++|.+ |+| .+++++|||||+||||||||||||+||+|+|+++|++|+++|+|++|+
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I-~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di 723 (1622)
T PLN03130 645 LVAIVGSTGEGKTSLISAMLGELPPRSDASV-VIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDL 723 (1622)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhccCCCceE-EEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHH
Confidence 999999999999999999999999999 899 999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccc
Q 001091 704 EMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL 783 (1159)
Q Consensus 704 ~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l 783 (1159)
+.||+||+|+|||+|.||||||||||+||||+|+|||||||||||||||+|++++|+++|+++.++|||+|+|||+++++
T Consensus 724 ~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l 803 (1622)
T PLN03130 724 DLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFL 803 (1622)
T ss_pred HhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred cccCEEEEEeCCeEEEecChHHHHhhcchHHHHHHHHhhhcccCCCCCCcc-cc-cccCcccccc-hhhhhccC-CCccC
Q 001091 784 DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQED-KC-LSRVPCQMSQ-ITEERFAR-PISCG 859 (1159)
Q Consensus 784 ~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~-~~~~~~~~-~~~~~ 859 (1159)
+.||+|++|+||+|+++|+|+|+++ .++.|.+++..+....+..+...++ +. ....+..... ....+... ....+
T Consensus 804 ~~aD~Ii~L~~G~i~e~Gt~~eL~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 882 (1622)
T PLN03130 804 SQVDRIILVHEGMIKEEGTYEELSN-NGPLFQKLMENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSK 882 (1622)
T ss_pred HhCCEEEEEeCCEEEEeCCHHHHHh-cchhHHHHHHhccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999998 7888888876643211111000000 00 0000000000 00000000 00000
Q ss_pred CCCCC-CccchhhcCcchHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhccchheeecccccc--cCCchhHHHHHHHH
Q 001091 860 EFSGR-SQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKR--KVSREQLIGVFIFL 936 (1159)
Q Consensus 860 ~~~~~-~~~e~~~~G~v~~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~--~~~~~~~l~vy~~l 936 (1159)
+.+.. .++|+++.|.|++++|++|+++.++++.+.+++++.++.+++.+++++|+++|++... ......|+++|+++
T Consensus 883 ~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l 962 (1622)
T PLN03130 883 EGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALL 962 (1622)
T ss_pred ccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHH
Confidence 01112 4568889999999999999998766656556666777888899999999999985322 22346789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHH
Q 001091 937 SGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLL 1016 (1159)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l 1016 (1159)
+++..++.+++.+++...+.++++++|++++++++|+||+|||+||+|||+|||++|++.+|..+|..+..++..++.++
T Consensus 963 ~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i 1042 (1622)
T PLN03130 963 SFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLL 1042 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccchHHHHHHHHHHH
Q 001091 1017 SIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLI 1096 (1159)
Q Consensus 1017 ~~i~vi~~~~~~~~~~~iPl~~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~f~~~~~~~l 1096 (1159)
++++++++..|+.+++++|+.+++++++++|.+++||++|++.+++||+++||+|+++|+.|||||+++++|.+++.+.+
T Consensus 1043 ~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~ 1122 (1622)
T PLN03130 1043 STFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSM 1122 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHH
Confidence 99999998898888888999888889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001091 1097 DDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVT 1134 (1159)
Q Consensus 1097 D~~~~~~~~~~~~~rWL~~rldll~~~~~~~~~~~~v~ 1134 (1159)
|.++++.+....+++|+++|+++++++++.+.+.+++.
T Consensus 1123 ~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~ 1160 (1622)
T PLN03130 1123 DNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVM 1160 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998877666655553
No 3
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.3e-150 Score=1495.97 Aligned_cols=1093 Identities=25% Similarity=0.408 Sum_probs=888.1
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHhhccCCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHH--------Hhhccccccch
Q 001091 13 DKVLESVNVAFFIGLFTRLWIEILKRRRDDGYILMARRAAGLVIVLCNVLIFILYMGFGFY--------EYWNFRIVSFK 84 (1159)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 84 (1159)
|-++..++.++++++....+....++++..++... ..+.|+.+++++++.++..+++.+. +.. +....+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 112 (1495)
T PLN03232 35 DSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLR-KKYYNCVLGILACYCVVEPVLRLVMGISLFDMDEET-DLPPFEV 112 (1495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccccCCcccc-chHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc-ccccchh
Confidence 44666777777766665555544323333333333 3357888888888888888877554 111 1111122
Q ss_pred h-----HHHHHHHHHHHHHHHHhhhhcccCcccccchhHHHHHHHH---HHHHHHHHHHHHHHHHhhcCCCCccchhHHH
Q 001091 85 S-----VSLVVTWALATVVALCSRYYRTLGEHKRWPLVLVLWWVVH---LVIVLVCVSVYLLTHLSSIGLPHILPEAKAV 156 (1159)
Q Consensus 85 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1159)
. .+..++|+++..+...++++ |. ++++.+++||++. +++... ...+....+.. ...++..+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~ 181 (1495)
T PLN03232 113 ASLMVEAFAWFSMLVLIGLETKQYVK---EF--RWYVRFGVVYVLVADAVLLDLV----LPLKNSINRTA--LYLCISSR 181 (1495)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHh---cC--CCCceeeehhHhhhhHHHHHHH----HHHHHHHhccc--cceehhHH
Confidence 2 12245555555544445544 33 8899999999998 554221 12222222210 01122222
Q ss_pred HHHHHHHHHHHhcccccccccCCCCCCCC---CCCCc--cccchhhccCCCCcccCChhHHHHHHhHHHHHHhhccCCCC
Q 001091 157 DFVSLPLLVLLCFNATYACCCARDPSDLD---IPLLR--EEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLE 231 (1159)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~~~--~~~~~~~~~~~~p~~~a~~~s~~~F~W~~pl~~~G~~~~L~ 231 (1159)
.+.+.+.+..+... .|..+.+ ... .+..+ +-+..|.+.+++||++||+|||++|+|++|++++|||++|+
T Consensus 182 ~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~w~~pl~~~g~~~~L~ 256 (1495)
T PLN03232 182 CCQALFGILLLVYI----PELDPYP-GYHILNNESLDNVEYDALRGGENICPERYASIFSRIYFSWMTPLMQLGYRKPIT 256 (1495)
T ss_pred HHHHHHHHHHHHhc----ccCCCCC-cccccccccccccccccccccCCCCccccCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 22222111110111 1122110 000 00011 00112234678899999999999999999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHhccc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 001091 232 LLHIPPIPQSETANDASSLLEESLRKQKT-DATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHD 310 (1159)
Q Consensus 232 ~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~-~~~sl~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~ 310 (1159)
.+|||+|+++|+++.+.++|++.|+++.+ ++|++++++++++++.++.+++++++.+++.+++|++++.+++++++++.
T Consensus 257 ~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~ 336 (1495)
T PLN03232 257 EKDVWQLDQWDQTETLIKRFQRCWTEESRRPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDP 336 (1495)
T ss_pred hhhccCCChhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999998743 46899999999999999999999999999999999999999999976542
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC---ChHHHHHHHHHHHHHHHH
Q 001091 311 HSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SSGIIINMINVDVERIGD 387 (1159)
Q Consensus 311 ~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~riR~~L~~~iy~K~L~ls~~~~---~~G~i~nlms~D~~~i~~ 387 (1159)
.+. ++.+++++++..++.+++.++|++...+++.++|..+...+|+|.++++.... ++|+++|+|++|++++.+
T Consensus 337 --~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~ 413 (1495)
T PLN03232 337 --AWV-GYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQ 413 (1495)
T ss_pred --cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 344 78888888888888899988999988999999999999999999999987543 799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q 001091 388 FFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVL 467 (1159)
Q Consensus 388 ~~~~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~I 467 (1159)
+...+|.+|..|++++++++++|..+| ++++++++++++++|++..++++.++.+++.++.+|+|.+.++|+++|||+|
T Consensus 414 ~~~~l~~l~~~p~~ii~~~~~l~~~lg-~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~I 492 (1495)
T PLN03232 414 IAEQLHGLWSAPFRIIVSMVLLYQQLG-VASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTV 492 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 8888888888888999999999999999999999999999999999999999
Q ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHH
Q 001091 468 KLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIY 547 (1159)
Q Consensus 468 K~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~ 547 (1159)
|+|+||+.+.+++++.|++|.+..++.....+...+.....|.++++++|++|.+.++++|++.+|+++++++.+..|+.
T Consensus 493 K~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~ 572 (1495)
T PLN03232 493 KCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLN 572 (1495)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888777776666677888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEE
Q 001091 548 NLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKV 626 (1159)
Q Consensus 548 ~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~v 626 (1159)
.+|..+..+.++++|++||++|++.+|+.+... .+.......|+++|++|+|+++ +++++|+| ||++++||++
T Consensus 573 ~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~-~~~~~~~~~I~~~~vsF~y~~~-----~~~~vL~~inl~i~~Ge~v 646 (1495)
T PLN03232 573 MLPNLLSQVVNANVSLQRIEELLLSEERILAQN-PPLQPGAPAISIKNGYFSWDSK-----TSKPTLSDINLEIPVGSLV 646 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccccccc-CCcCCCCCcEEEEeeEEEcCCC-----CCCceeeeeEEEEcCCCEE
Confidence 999999999999999999999998766321111 1111123469999999999864 34679999 9999999999
Q ss_pred EEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhc
Q 001091 627 AVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMW 706 (1159)
Q Consensus 627 aIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~l 706 (1159)
+||||+|||||||+++|+||++|.+|.+..+++++|||||+||||||||||||+||+++|+++|++|+++|+|++|++.|
T Consensus 647 aIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~L 726 (1495)
T PLN03232 647 AIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLL 726 (1495)
T ss_pred EEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhC
Confidence 99999999999999999999999999876889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccccc
Q 001091 707 ADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAA 786 (1159)
Q Consensus 707 p~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~a 786 (1159)
|+||+|+|||+|.+|||||||||+||||+|+|||||||||||||||+||+++|+++|+++.+++||+|+|||++++++.|
T Consensus 727 p~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~a 806 (1495)
T PLN03232 727 PGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLM 806 (1495)
T ss_pred CCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred CEEEEEeCCeEEEecChHHHHhhcchHHHHHHHHhhhcccCCCCCCcccccccCcccccchhhhhccCCCccCC-CCCC-
Q 001091 787 DLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGE-FSGR- 864 (1159)
Q Consensus 787 D~Iivl~~G~I~e~Gt~~eL~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 864 (1159)
|+|++|+||+|+++|+|+|+++ .++.|.++.+.+....+..++.++.++..+.......+...+......+++ .+..
T Consensus 807 D~Ii~L~~G~i~~~Gt~~eL~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 885 (1495)
T PLN03232 807 DRIILVSEGMIKEEGTFAELSK-SGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVTIDVSERNLGSTKQGKRGRSVL 885 (1495)
T ss_pred CEEEEEeCCEEEEecCHHHHHh-cchhHHHHHHhcccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 9999999999999999999998 788888887665422111100000000000000000000000000000011 1112
Q ss_pred CccchhhcCcchHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhccchheeecccccc--cCCchhHHHHHHHHHHHHHH
Q 001091 865 SQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKR--KVSREQLIGVFIFLSGGSSF 942 (1159)
Q Consensus 865 ~~~e~~~~G~v~~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~--~~~~~~~l~vy~~l~~~~~~ 942 (1159)
.++|++++|.|++++|++|+++.++++.+.+++++.++.++..+++++|+++|++++. ..+..+|+++|++++++..+
T Consensus 886 ~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~ 965 (1495)
T PLN03232 886 VKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVA 965 (1495)
T ss_pred hhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHH
Confidence 5678889999999999999999766566556666677788889999999999985321 22356899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001091 943 FILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILM 1022 (1159)
Q Consensus 943 ~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~i~vi 1022 (1159)
+.+++.+++...+.++++++|++|+++++|+|++|||++|+|||+|||++|++.||+.+|..+..++..++.++++++++
T Consensus 966 ~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~ 1045 (1495)
T PLN03232 966 VTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALI 1045 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccchHHHHHHHHHHHhhhhhh
Q 001091 1023 SQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCV 1102 (1159)
Q Consensus 1023 ~~~~~~~~~~~iPl~~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~f~~~~~~~lD~~~~~ 1102 (1159)
++..|.++++++|+.++++.++++|.+++|+++|++..++||+++||+|+++|+.|||||+++++|.+++.+..|.++++
T Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~ 1125 (1495)
T PLN03232 1046 GTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRF 1125 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 88888777788888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001091 1103 TFHNCGTMEWLCLRINLLFNFAFFLVLIILVT 1134 (1159)
Q Consensus 1103 ~~~~~~~~rWL~~rldll~~~~~~~~~~~~v~ 1134 (1159)
.+.....++|+++|+++++++++.+.+.+++.
T Consensus 1126 ~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~ 1157 (1495)
T PLN03232 1126 TLANTSSNRWLTIRLETLGGVMIWLTATFAVL 1157 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988766665555553
No 4
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.5e-144 Score=1444.63 Aligned_cols=1064 Identities=28% Similarity=0.466 Sum_probs=867.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccccccch----hHHHHHHHHHHHHHHHHhhhhcccCcccccchhHHHHHHHHHH
Q 001091 52 AGLVIVLCNVLIFILYMGFGFYEYWNFRIVSFK----SVSLVVTWALATVVALCSRYYRTLGEHKRWPLVLVLWWVVHLV 127 (1159)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 127 (1159)
.|++...++.++.+....+.+|....+....+. +....++|+++.++...++.+ +. +.|..+..||+++.+
T Consensus 67 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~---~~--~~s~~l~~~~~~~~~ 141 (1522)
T TIGR00957 67 TKTALGFLLWIVCWADLFYSFWERSHGRAPAPVFLVSPTLLGITMLLATFLIQLERRK---GV--QSSGIMLTFWLVALV 141 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHhc---cc--CCCcchhHHHHHHHH
Confidence 566666655555554455556653222111111 223356666555555444433 33 778899999999887
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccchhHHHHHHHHHHHHHHhcccccccccCCCCCCCCCCCCccccchhhccCCCCcccC
Q 001091 128 IVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNATYACCCARDPSDLDIPLLREEDDEFLCKNISTFASA 207 (1159)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~p~~~a 207 (1159)
+.... +++.+.................+...+.+....+... +..+ ..|++.+.. .+.+.+||++|
T Consensus 142 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----~~~~~~~~~---~~~~~~~e~~a 207 (1522)
T TIGR00957 142 CALAI-LRSKILLALKEDAIVDPFRDTTFYIYFALVLSQLVLS-----CFSD-----KSPLFSETN---HDPNPCPESSA 207 (1522)
T ss_pred HHHHH-HHHHHHHhhcccccccceehhhHHHHHHHHHHHHHHH-----hhcC-----CCCcccccc---ccCCCCCcccC
Confidence 73322 2433221100100000111111111111111111111 1111 224332211 12346899999
Q ss_pred ChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhcc----------------------------
Q 001091 208 GVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQK---------------------------- 259 (1159)
Q Consensus 208 ~~~s~~~F~W~~pl~~~G~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~---------------------------- 259 (1159)
|++||++|||+||++++|||++|+.+|||+++++|+++.+.++|++.|+++.
T Consensus 208 ~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1522)
T TIGR00957 208 SFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDA 287 (1522)
T ss_pred CHHHHHHHHHhHHHHHHHhcCCCChhhccCCCHhHhHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999998641
Q ss_pred --------------cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH
Q 001091 260 --------------TDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFL 325 (1159)
Q Consensus 260 --------------~~~~sl~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~ 325 (1159)
.++++|+++++++||+.++..++++++.+++.+++|++++.+++++.+++. .... ||.++++++
T Consensus 288 ~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~-~~~~-g~~~~~~~~ 365 (1522)
T TIGR00957 288 NEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMA-PDWQ-GYFYTGLLF 365 (1522)
T ss_pred cccccccccccccccCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-ccch-HHHHHHHHH
Confidence 023689999999999999999999999999999999999999999976543 2334 888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 326 FAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIHRIWLLPVQV 402 (1159)
Q Consensus 326 ~~~~~~~l~~~~~~~~~~r~~~riR~~L~~~iy~K~L~ls~~~~---~~G~i~nlms~D~~~i~~~~~~~~~~w~~pl~i 402 (1159)
+..++.+++.++|++...++++++|++|+..+|+|+|+++...+ ++|+++|+|++|++++.++..++|.+|..|+++
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i 445 (1522)
T TIGR00957 366 VCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQV 445 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987544 789999999999999999999999999999999
Q ss_pred HHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHH
Q 001091 403 FLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR 482 (1159)
Q Consensus 403 ~ia~~lL~~~lg~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~ 482 (1159)
+++++++|.++| ++++++++++++++|++..++++.+++++++++.+|+|++.++|+++|||+||+|+||+.|.+++++
T Consensus 446 ~~~~~ll~~~~g-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~ 524 (1522)
T TIGR00957 446 ILALYFLWLNLG-PSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEG 524 (1522)
T ss_pred HHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 483 LREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILL--KTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTK 560 (1159)
Q Consensus 483 ~R~~E~~~l~~~~~~~~~~~~~~~~~~~lv~~~~f~~~~~~--~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~ 560 (1159)
.|++|++..++..+......+.....|.++.+++|++|.+. ++.++++.+|++++++++++.|+..+|..+..+.+++
T Consensus 525 ~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~ 604 (1522)
T TIGR00957 525 IRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQAS 604 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888887777777788988888999998876 3579999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccC-CCCCCCCCCC-CCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChh
Q 001091 561 VSLYRIQEFIKEDN-QKKPITEPTS-KASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKS 637 (1159)
Q Consensus 561 vs~~RI~~fL~~~e-~~~~~~~~~~-~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKS 637 (1159)
+|++||++|++.+| +++....... ......|+++|++|+|+++ .+++|+| |+++++|++++|+||+|||||
T Consensus 605 ~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~l~~isl~i~~G~~v~IvG~~GsGKS 678 (1522)
T TIGR00957 605 VSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARD------LPPTLNGITFSIPEGALVAVVGQVGCGKS 678 (1522)
T ss_pred HHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCC------CCceeeeeEEEEcCCCEEEEECCCCCCHH
Confidence 99999999998766 2221111111 1112369999999999753 3579999 999999999999999999999
Q ss_pred HHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCC
Q 001091 638 SLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1159)
Q Consensus 638 TLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~ 717 (1159)
||+++|+|+++|.+|+| .++|++|||||+||++++||||||+||.++|+++|++++++|+|.+|++.+|+||+|+|||+
T Consensus 679 TLl~~l~g~~~~~~G~i-~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~ 757 (1522)
T TIGR00957 679 SLLSALLAEMDKVEGHV-HMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEK 757 (1522)
T ss_pred HHHHHHhCCCccCCcEE-EECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCC
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH--hhhcCCcEEEEEccCcccccccCEEEEEeCC
Q 001091 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL--MGLLSQKTVLYTTHQLEFLDAADLVLVMKDG 795 (1159)
Q Consensus 718 G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i--~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G 795 (1159)
|.+|||||||||+||||+|++||||||||||||||+++++++++.++ +++++++|+|+|||+++.++.||+|++|++|
T Consensus 758 g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G 837 (1522)
T TIGR00957 758 GVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGG 837 (1522)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCC
Confidence 99999999999999999999999999999999999999999999987 4677899999999999999999999999999
Q ss_pred eEEEecChHHHHhhcchHHHHHHHHhhhcccCC--CCC------Cccccc----c--cC----cccc-c-----chhhhh
Q 001091 796 KIEQSGKYEDLIADQNSELVRQMKAHRKSLDQV--NPP------QEDKCL----S--RV----PCQM-S-----QITEER 851 (1159)
Q Consensus 796 ~I~e~Gt~~eL~~~~~~~~~~l~~~~~~~~~~~--~~~------~~~~~~----~--~~----~~~~-~-----~~~~~~ 851 (1159)
+|+++|+|+|+.+ .++.|.++...+..+.+.. ++. .+++.. . .. ..+. . .+....
T Consensus 838 ~i~~~g~~~~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 916 (1522)
T TIGR00957 838 KISEMGSYQELLQ-RDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGD 916 (1522)
T ss_pred eEEeeCCHHHHHh-cchhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhcccccccccc
Confidence 9999999999998 7788888876543211100 000 000000 0 00 0000 0 000000
Q ss_pred ------ccCCCcc-C-C-CCCC-CccchhhcCcchHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhccchheeeccccc
Q 001091 852 ------FARPISC-G-E-FSGR-SQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK 921 (1159)
Q Consensus 852 ------~~~~~~~-~-~-~~~~-~~~e~~~~G~v~~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~ 921 (1159)
+..+... + + ...+ .++|+++.|+|++++|++|++++| +..+++++++.++.+++.+++++|+++|++..
T Consensus 917 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~ 995 (1522)
T TIGR00957 917 QSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIG-LFITFLSIFLFVCNHVSALASNYWLSLWTDDP 995 (1522)
T ss_pred ccccccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0000000 0 0 1112 456778899999999999999864 44455555666777888899999999998532
Q ss_pred c----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHH
Q 001091 922 R----KVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTV 997 (1159)
Q Consensus 922 ~----~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~v 997 (1159)
. ..+..+|+++|++++++..++.+++.+++...+.++++++|++|+++++++|++|||++|+|||+|||++|++.+
T Consensus 996 ~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~i 1075 (1522)
T TIGR00957 996 MVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTV 1075 (1522)
T ss_pred cccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHH
Confidence 1 222457889999999999999999888889999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchh
Q 001091 998 DTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGAT 1077 (1159)
Q Consensus 998 D~~lp~~l~~~~~~~~~~l~~i~vi~~~~~~~~~~~iPl~~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~ 1077 (1159)
|+.+|..+..++..++.+++.++++++..|+++++++|+++++++++++|.+++||++|++..++||+++||+|+++|+.
T Consensus 1076 d~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~ 1155 (1522)
T TIGR00957 1076 DSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVS 1155 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcH
Confidence 99999999999999999999999999988988888889888999999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 001091 1078 TIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSKFLQ 1147 (1159)
Q Consensus 1078 tIRAf~~e~~f~~~~~~~lD~~~~~~~~~~~~~rWL~~rldll~~~~~~~~~~~~v~~~~~~~~~g~v~~ 1147 (1159)
||||||+|++|.+++.+.+|.+++++|.....++|+++|+++++++++++++.+++. .++.+++|.++.
T Consensus 1156 tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~g~l~~ 1224 (1522)
T TIGR00957 1156 VIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVI-SRHSLSAGLVGL 1224 (1522)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999998776666555553 356788987553
No 5
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2e-138 Score=1383.55 Aligned_cols=924 Identities=24% Similarity=0.404 Sum_probs=793.7
Q ss_pred CCCcccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhcc---cCCCChHHHHHHHHHHHH
Q 001091 201 ISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQK---TDATSLPQVIIHAVWKSL 277 (1159)
Q Consensus 201 ~~p~~~a~~~s~~~F~W~~pl~~~G~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~---~~~~sl~~~l~~~~~~~~ 277 (1159)
.+||++||+|||++|||+||++++|||++|+.+|||+|+++++++.+.++|++.|+++. .++++|+++++++|++.+
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~L~~~l~~~~~~~~ 82 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASAKKNPKLLNALRRCFFWRF 82 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999998753 345899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 278 ALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLI 357 (1159)
Q Consensus 278 ~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~riR~~L~~~i 357 (1159)
+..++++++.+++.+++|++++.+|+|+++++. .....||.++++++++.++++++.++++|...++++++|+++...+
T Consensus 83 ~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~i 161 (1490)
T TIGR01271 83 VFYGILLYFGEATKAVQPLLLGRIIASYDPFNA-PEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLI 161 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999964332 2222388899999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHH
Q 001091 358 YKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTP 434 (1159)
Q Consensus 358 y~K~L~ls~~~~---~~G~i~nlms~D~~~i~~~~~~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l~~~i~~~~~~~~ 434 (1159)
|+|+|+++.... ++|+++|+|++|++++.+++.++|.+|..|+++++++++||..+| ++++++++++++++|++.+
T Consensus 162 y~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G-~~~l~~l~v~~~~~~~~~~ 240 (1490)
T TIGR01271 162 YKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLE-VNGFCGLGFLILLALFQAC 240 (1490)
T ss_pred HHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 999999976533 789999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 435 LANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSV 514 (1159)
Q Consensus 435 ~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~~~lv~~ 514 (1159)
++++..++++++++.+|+|++.++|+|+|||+||+|+||+.|.+++++.|++|++..++..+......++++..|.++++
T Consensus 241 ~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1490)
T TIGR01271 241 LGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVF 320 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988887777788889999999
Q ss_pred HHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEE
Q 001091 515 ITFGVCILLKTPLTSGAVLSALATFRILQEPIY-NLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDI 593 (1159)
Q Consensus 515 ~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~-~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~~ 593 (1159)
++|++|.+.++ ++++.+|++++++++++.|+. .+|..+..+.++.+|++||++||..+|..+... . .....|++
T Consensus 321 ~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~-~---~~~~~i~~ 395 (1490)
T TIGR01271 321 LSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY-N---LTTTEVEM 395 (1490)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc-c---CCCCceEE
Confidence 99999988754 789999999999999999985 799999999999999999999998876322111 0 11235999
Q ss_pred eeeEEEeCCccc---------c-----c------------CCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCC
Q 001091 594 EAGEYAWDAREE---------N-----F------------KKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 594 ~~~sf~w~~~~~---------~-----~------------~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe 646 (1159)
+|++|+|+...+ . . ....++|+| |++|++|++++|+||+||||||||++|+|+
T Consensus 396 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~ 475 (1490)
T TIGR01271 396 VNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE 475 (1490)
T ss_pred ecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 999999964200 0 0 012468999 999999999999999999999999999999
Q ss_pred ccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHH
Q 001091 647 IPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1159)
Q Consensus 647 ~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQK 726 (1159)
++|.+|+| .++|++|||+|+||+|++||||||+||.++++++|++++++|+|++|++.+|+||+|+|||+|.+||||||
T Consensus 476 ~~~~~G~i-~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqk 554 (1490)
T TIGR01271 476 LEPSEGKI-KHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQR 554 (1490)
T ss_pred CCCCCceE-EECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHH
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHH
Q 001091 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDL 806 (1159)
Q Consensus 727 QRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL 806 (1159)
|||+||||+|++||||||||||||||++++++++++|+.++++++|+|+|||+++.++.||+|++|++|+|++.|+++++
T Consensus 555 qRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l 634 (1490)
T TIGR01271 555 ARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634 (1490)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHHHHhhh--c------------------cc--C-----CCC--------CCcc-cc--------------
Q 001091 807 IADQNSELVRQMKAHRK--S------------------LD--Q-----VNP--------PQED-KC-------------- 836 (1159)
Q Consensus 807 ~~~~~~~~~~l~~~~~~--~------------------~~--~-----~~~--------~~~~-~~-------------- 836 (1159)
.+ .+..|.+.+..... . .+ . .++ ..+. ..
T Consensus 635 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1490)
T TIGR01271 635 QA-KRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASAR 713 (1490)
T ss_pred Hh-cChHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 87 66666665531100 0 00 0 000 0000 00
Q ss_pred -----------------c--ccCccc------c----cchhhh------------------------h-------ccC--
Q 001091 837 -----------------L--SRVPCQ------M----SQITEE------------------------R-------FAR-- 854 (1159)
Q Consensus 837 -----------------~--~~~~~~------~----~~~~~~------------------------~-------~~~-- 854 (1159)
+ ...+.+ . .+++.. . ...
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1490)
T TIGR01271 714 KFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQ 793 (1490)
T ss_pred ccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccc
Confidence 0 000000 0 000000 0 000
Q ss_pred ----------------CC--------ccC----------CC--CCC-CccchhhcCcchHHHHHHHHHHhcchhHHHHHH
Q 001091 855 ----------------PI--------SCG----------EF--SGR-SQDEDTELGRVKWTVYSAFITLVYKGALVPVIL 897 (1159)
Q Consensus 855 ----------------~~--------~~~----------~~--~~~-~~~e~~~~G~v~~~vy~~Y~~~~~g~~~~~~~~ 897 (1159)
.. ..+ +. .+. .++|+++.|.|+|++|++|++++|++..+.+++
T Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~ 873 (1490)
T TIGR01271 794 TSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFC 873 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHHH
Confidence 00 000 00 001 345677889999999999999876555555556
Q ss_pred HHHHHHHHHHhccchheeeccccc--------cc------------C-CchhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 898 LCQVLFQALQMGSNYWIAWATDEK--------RK------------V-SREQL-IGVFIFLSGGSSFFILGRAVLLATIA 955 (1159)
Q Consensus 898 ~~~~~~~~~~~~~~~wl~~w~~~~--------~~------------~-~~~~~-l~vy~~l~~~~~~~~~~~~~~~~~~~ 955 (1159)
++.++.+++.+++++|+++|+... +. . ...+| +++|++++++..++.+++.+++...+
T Consensus 874 ~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1490)
T TIGR01271 874 LVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTL 953 (1490)
T ss_pred HHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666788999999999998776311 00 0 11233 55666666667777888999999999
Q ss_pred HHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 001091 956 IKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLV 1035 (1159)
Q Consensus 956 ~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~i~vi~~~~~~~~~~~iP 1035 (1159)
.++++++|++|+++++++|++|||++|+|||+|||++|++.||+.+|..+..++.+++.+++.++++++..|+++++++|
T Consensus 954 ~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~ 1033 (1490)
T TIGR01271 954 LTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIP 1033 (1490)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccchHHHHHHHHHHHhhhhhhHHHHHHHhHHHHH
Q 001091 1036 ILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCL 1115 (1159)
Q Consensus 1036 l~~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~f~~~~~~~lD~~~~~~~~~~~~~rWL~~ 1115 (1159)
+++++++++++|++++||++|++..++||+++||+|+++|+.||||||+|++|.+++.+.+|.+++++|.....++|+.+
T Consensus 1034 l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 1113 (1490)
T TIGR01271 1034 VAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQM 1113 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001091 1116 RINLLFNFAFFLVLIILV 1133 (1159)
Q Consensus 1116 rldll~~~~~~~~~~~~v 1133 (1159)
|+++++++++..++++++
T Consensus 1114 ~~~~i~~~~~~~~~~l~~ 1131 (1490)
T TIGR01271 1114 RIDIIFVFFFIAVTFIAI 1131 (1490)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999988765544433333
No 6
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.3e-128 Score=1287.07 Aligned_cols=943 Identities=25% Similarity=0.409 Sum_probs=803.8
Q ss_pred cCCCCcccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhccc------------------
Q 001091 199 KNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQKT------------------ 260 (1159)
Q Consensus 199 ~~~~p~~~a~~~s~~~F~W~~pl~~~G~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~------------------ 260 (1159)
..+.||++||||.++++.|++|++.+..|..|+++|+|+...+.++-++..++.+..+++..
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1560)
T PTZ00243 57 YTPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLD 136 (1560)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeecc
Confidence 34569999999999999999999999999999999999999999987777666654432200
Q ss_pred --------------------------------------------------------------------------------
Q 001091 261 -------------------------------------------------------------------------------- 260 (1159)
Q Consensus 261 -------------------------------------------------------------------------------- 260 (1159)
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (1560)
T PTZ00243 137 ASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSS 216 (1560)
T ss_pred ccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeecc
Confidence
Q ss_pred -------------CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHH
Q 001091 261 -------------DATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFA 327 (1159)
Q Consensus 261 -------------~~~sl~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~ 327 (1159)
+..+|++++++++|+.++..++++++.+++.+++|++++.+++++++++. .+..|++++++++++
T Consensus 217 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~--~~~~g~~l~~~l~~~ 294 (1560)
T PTZ00243 217 TGSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNA--TWGRGLGLVLTLFLT 294 (1560)
T ss_pred cccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--chhHHHHHHHHHHHH
Confidence 01379999999999999999999999999999999999999999976543 343478888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 328 KTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAG-----PSSGIIINMINVDVERIGDFFLYIHRIWLLPVQV 402 (1159)
Q Consensus 328 ~~~~~l~~~~~~~~~~r~~~riR~~L~~~iy~K~L~ls~~~-----~~~G~i~nlms~D~~~i~~~~~~~~~~w~~pl~i 402 (1159)
.++++++.+++++...+.+.++|++|.+.+|+|+++++..+ .++|+++|+|++|++++.+++.++|.+|..|+++
T Consensus 295 ~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~l 374 (1560)
T PTZ00243 295 QLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVL 374 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997643 2789999999999999999999999999999999
Q ss_pred HHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHH
Q 001091 403 FLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR 482 (1159)
Q Consensus 403 ~ia~~lL~~~lg~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~ 482 (1159)
++++++||..+| +++++|++++++++|++.++++++.++++++++++|+|++.++|+++|||+||++|||+.|.+++++
T Consensus 375 i~~~~lL~~~lG-~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~ 453 (1560)
T PTZ00243 375 LLSILLLSRLVG-WCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIED 453 (1560)
T ss_pred HHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 483 LREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVS 562 (1159)
Q Consensus 483 ~R~~E~~~l~~~~~~~~~~~~~~~~~~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs 562 (1159)
.|++|++.+++..+..++..++.+.+|.++.+++|++|.+.+++||++.+|+++++|+.++.|+.++|..++.+.++.+|
T Consensus 454 ~R~~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS 533 (1560)
T PTZ00243 454 KRARELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVS 533 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCC-CCC---C-C-------CCC-----------------------------------------------
Q 001091 563 LYRIQEFIKEDNQ-KKP---I-T-------EPT----------------------------------------------- 583 (1159)
Q Consensus 563 ~~RI~~fL~~~e~-~~~---~-~-------~~~----------------------------------------------- 583 (1159)
++||++||+.+|. .+. . + ..+
T Consensus 534 ~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (1560)
T PTZ00243 534 IKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPT 613 (1560)
T ss_pred HHHHHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccc
Confidence 9999999987651 100 0 0 000
Q ss_pred CCCCCccEEEeeeEEEeCCccc--------------------------------ccCCCcccccC-CeEeeCCcEEEEEc
Q 001091 584 SKASDVAIDIEAGEYAWDAREE--------------------------------NFKKPTIKLTD-KMKIMKGSKVAVCG 630 (1159)
Q Consensus 584 ~~~~~~~I~~~~~sf~w~~~~~--------------------------------~~~~~~~~L~~-nl~i~~G~~vaIvG 630 (1159)
.......+.++|++|+|+.... ....++++|+| ||++++|++++|+|
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG 693 (1560)
T PTZ00243 614 KRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLG 693 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEEC
Confidence 0000124667777777652110 00013468999 99999999999999
Q ss_pred CCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCC
Q 001091 631 SVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710 (1159)
Q Consensus 631 ~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd 710 (1159)
|+||||||||++|+|+++|++|+| .+++++|||||+||++++||+|||+||.++|+++|++++++|+|++|++.+|+||
T Consensus 694 ~nGsGKSTLL~~i~G~~~~~~G~i-~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~ 772 (1560)
T PTZ00243 694 ATGSGKSTLLQSLLSQFEISEGRV-WAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGL 772 (1560)
T ss_pred CCCCcHHHHHHHHhcCCCCCCcEE-EECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccc
Confidence 999999999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEE
Q 001091 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVL 790 (1159)
Q Consensus 711 ~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Ii 790 (1159)
+|++||+|.+|||||||||+||||+|++||||||||||||||++++++++++++.+.++|+|+|+|||+++.++.||+|+
T Consensus 773 ~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii 852 (1560)
T PTZ00243 773 ETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVV 852 (1560)
T ss_pred hHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999887778999999999999999999999
Q ss_pred EEeCCeEEEecChHHHHhhcchHHHHHHHHhhhcccCCCC-CCcccccccC-c---ccccchhhh-hcc-CC---CccCC
Q 001091 791 VMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNP-PQEDKCLSRV-P---CQMSQITEE-RFA-RP---ISCGE 860 (1159)
Q Consensus 791 vl~~G~I~e~Gt~~eL~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~-~---~~~~~~~~~-~~~-~~---~~~~~ 860 (1159)
+|++|+|+++|+++|+.+ .+ .+.++........+..+. .+.+....+. + ......... ... +. ...+.
T Consensus 853 ~l~~G~i~~~G~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1560)
T PTZ00243 853 ALGDGRVEFSGSSADFMR-TS-LYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDA 930 (1560)
T ss_pred EEECCEEEEecCHHHHHh-Ch-HHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999987 43 566665442211110000 0000000000 0 000000000 000 00 00011
Q ss_pred CCCC-CccchhhcCcchHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhccchheeecccccccCCchhHHHHHHHHHHH
Q 001091 861 FSGR-SQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGG 939 (1159)
Q Consensus 861 ~~~~-~~~e~~~~G~v~~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~l~vy~~l~~~ 939 (1159)
..++ .++|+++.|.|+|++|+.|++++|+...+.++++++++.+++..++++|+++|+++....+...|+++|++++++
T Consensus 931 ~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~l~~y~~~~~~ 1010 (1560)
T PTZ00243 931 AAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLL 1010 (1560)
T ss_pred ccchhhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccHHHHHHHHHHH
Confidence 1122 466788899999999999999987655555555566677888899999999998544344556899999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001091 940 SSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSII 1019 (1159)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~i 1019 (1159)
..++.+++.+.....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..+|..+..++..++.+++.+
T Consensus 1011 ~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~l 1090 (1560)
T PTZ00243 1011 GTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSI 1090 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccchHHHHHHHHHHHhhh
Q 001091 1020 ILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDY 1099 (1159)
Q Consensus 1020 ~vi~~~~~~~~~~~iPl~~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~f~~~~~~~lD~~ 1099 (1159)
+++++..|.++++++|+.+++++++++|.+.+||++|+++.++||+++|++|+++|+.|||+|++|++|.+++.+.+|.+
T Consensus 1091 i~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~ 1170 (1560)
T PTZ00243 1091 LVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVV 1170 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHH
Confidence 99999999888888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCCCHHHHHH
Q 001091 1100 SCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILV---TLPRSAIDPSKFLQ 1147 (1159)
Q Consensus 1100 ~~~~~~~~~~~rWL~~rldll~~~~~~~~~~~~v---~~~~~~~~~g~v~~ 1147 (1159)
.++.+.....++|+++|+++++++++++++++.+ ....+.+++|.++.
T Consensus 1171 ~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 1221 (1560)
T PTZ00243 1171 YSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSL 1221 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHH
Confidence 9999999999999999999998876544433332 22344567775543
No 7
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.2e-88 Score=836.20 Aligned_cols=857 Identities=19% Similarity=0.221 Sum_probs=625.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 274 WKSLALNAAFAGVNTIASYIGPFLI---TNFVSFLSGKHD-HS---SYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (1159)
Q Consensus 274 ~~~~~~~~l~~l~~~~~~~~~P~ll---~~li~~~~~~~~-~~---~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~ 346 (1159)
+.++++..+..+...+....+|++. ..+.+.+..... .. ..++++.+...-+...+...+...+|.+.+.|..
T Consensus 24 ~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~ 103 (1228)
T KOG0055|consen 24 RFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQVSCWMRTGERQT 103 (1228)
T ss_pred hhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555566667643 445554432221 01 1122322221111122222333467888999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhHHhhhHHHHHH
Q 001091 347 IRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFL-----YIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1159)
Q Consensus 347 ~riR~~L~~~iy~K~L~ls~~~~~~G~i~nlms~D~~~i~~~~~-----~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~ 421 (1159)
.|+|.....++.||...+.+.. .+|++.+.|+.|+++|.|.+. ++|.+-....-++++++. +|..+++.
T Consensus 104 ~riR~~yl~~iLrQdi~~fD~~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~-----~W~Ltlv~ 177 (1228)
T KOG0055|consen 104 ARIRSKYLKAILRQDIGWFDTN-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYY-----GWKLTLVM 177 (1228)
T ss_pred HHHHHHHHHHHHhCccceeecc-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 9999999999999888776654 449999999999999999874 233322222222333222 45777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 001091 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERD-SLKKYLYTCSA 500 (1159)
Q Consensus 422 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~-~l~~~~~~~~~ 500 (1159)
+.+.+++.......++.+.+...+.+++..+.-+...|++.+||+|-.|+-|+...++..+.-+.-.+ .+++..+....
T Consensus 178 l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~ 257 (1228)
T KOG0055|consen 178 LSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLG 257 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888889999999999999999999999999999999999999999877777664333333 23333222222
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 001091 501 IAFL-FWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI 579 (1159)
Q Consensus 501 ~~~~-~~~~~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~ 579 (1159)
..+. ++.-......+|||..++..+..++|++++++...-+-...+.+..+.++.+.+++++..+|.+.++..+..++.
T Consensus 258 ~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~ 337 (1228)
T KOG0055|consen 258 LGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPY 337 (1228)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcc
Confidence 2211 222233455788898888888999999999987777778888999999999999999999999999876632221
Q ss_pred --CCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEE
Q 001091 580 --TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1159)
Q Consensus 580 --~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~ 656 (1159)
.........+.|+|+|++|+||.+ ++.++|++ ||+||+|+.||+||||||||||++++|.|+|+|++|+| .
T Consensus 338 ~~~~~~~~~~~g~ief~nV~FsYPsR-----pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V-~ 411 (1228)
T KOG0055|consen 338 SKGGRVLSSIKGEIEFRNVCFSYPSR-----PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEV-L 411 (1228)
T ss_pred cccCCcccccccceEEEEEEecCCCC-----CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceE-E
Confidence 222223346789999999999988 66789999 99999999999999999999999999999999999999 9
Q ss_pred ECC-------------EEEEEecCCCCCCCcHHHHHhcCCCC-ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCC
Q 001091 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1159)
Q Consensus 657 v~g-------------~iayv~Q~pwi~~gTIreNIlfG~~~-d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LS 722 (1159)
++| +|+.|+|+|.+|++||+|||+||+|. ++++.+++.+.+..++++..||+|++|.+||+|..||
T Consensus 412 idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLS 491 (1228)
T KOG0055|consen 412 IDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLS 491 (1228)
T ss_pred EcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCC
Confidence 988 58999999999999999999999964 6778888888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecC
Q 001091 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1159)
Q Consensus 723 GGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt 802 (1159)
||||||||||||+.+||+|+||||||||||++.+ +++|++++.+.+|||.|+||||++++++||+|+||++|+|+|.|+
T Consensus 492 GGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se-~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~ 570 (1228)
T KOG0055|consen 492 GGQKQRIAIARALVRNPKILLLDEATSALDAESE-RVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGT 570 (1228)
T ss_pred hHHHHHHHHHHHHHhCCCEEEecCcccccCHHHH-HHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999995 477999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcchHHHHHHHHhhhcccCCC-CCCccc---ccccCcccccchhhhhc-cCCCcc-CCCCCC-CccchhhcCcc
Q 001091 803 YEDLIADQNSELVRQMKAHRKSLDQVN-PPQEDK---CLSRVPCQMSQITEERF-ARPISC-GEFSGR-SQDEDTELGRV 875 (1159)
Q Consensus 803 ~~eL~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~-~~~e~~~~G~v 875 (1159)
|+||++ .++.|.++++.+.......+ +.+++. ...+...+....+..+. ...... .+..++ .+++..+..
T Consensus 571 h~ELi~-~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-- 647 (1228)
T KOG0055|consen 571 HDELIA-LGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEPVSEED-- 647 (1228)
T ss_pred HHHHHh-ccchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCcccccccccccccccccccccccc--
Confidence 999999 67999999998754432211 000000 00000000000000000 000000 000000 000000011
Q ss_pred hHHHHHHHHHHhcc-hhHHHHHHHHHHHH---------HHHHhccchheeecccccccCCchhHHHHHHHHHHHHHHHHH
Q 001091 876 KWTVYSAFITLVYK-GALVPVILLCQVLF---------QALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFIL 945 (1159)
Q Consensus 876 ~~~vy~~Y~~~~~g-~~~~~~~~~~~~~~---------~~~~~~~~~wl~~w~~~~~~~~~~~~l~vy~~l~~~~~~~~~ 945 (1159)
....+++-++.+.+ |++.++.+++.++. ..++++..|...-+ +........|..+|+++|+++.++.+
T Consensus 648 ~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~--~~~~~~~~~~al~f~~l~~~~~i~~~ 725 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDD--DELKREVRAWALIFLGLGIVSGITNF 725 (1228)
T ss_pred ccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223444433322 22222222222111 11112222211100 11112234599999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc--CChhHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 946 GRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDS--TPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMS 1023 (1159)
Q Consensus 946 ~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~--tp~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~i~vi~ 1023 (1159)
+..++|.+.|.+.+++++..++++++|.+++|||. |. |+|.+|+++|...|...+...+..+++++..++..+++.+
T Consensus 726 ~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf 804 (1228)
T KOG0055|consen 726 LQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAF 804 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999995 67 9999999999999999999999999999999999999999
Q ss_pred HhhhHHHHH---HHHHHHHHHHHHHHHHh-hhHHHHH-HHhhccchHHHHHHHHhcchhhhhhccchHHHHHHHHHHHhh
Q 001091 1024 QAAWQVFPL---FLVILGISIWYQAYYIT-TARELAR-MVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDD 1098 (1159)
Q Consensus 1024 ~~~~~~~~~---~iPl~~~~~~~q~~Yl~-tsReLkR-L~~~srSPi~shf~Etl~Gl~tIRAf~~e~~f~~~~~~~lD~ 1098 (1159)
+..|.+.++ +.|++++..++|.+++. .+++.+. .|..++ ...|+++.++||+||+.|++|++.+.+.++.
T Consensus 805 ~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~-----iA~eai~NIrTV~al~~e~~~~~~y~~~l~~ 879 (1228)
T KOG0055|consen 805 IYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASK-----IAIEAVSNIRTVAALCAEEKFMELYKEELEK 879 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-----HHHHHHHhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999998765 57888888888877775 4555554 444433 6789999999999999999999999999999
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHhcCCCCCCHHHHHHHHHHhccccc
Q 001091 1099 YSCVTFHNCGTMEWLCLRINLLFNFAFFLVLII----LVTLPRSAIDPSKFLQLFISISPTAV 1157 (1159)
Q Consensus 1099 ~~~~~~~~~~~~rWL~~rldll~~~~~~~~~~~----~v~~~~~~~~~g~v~~~~~~is~~~~ 1157 (1159)
..+..+.. ..|-++-..+-.+++++.-+++ ..+..++..+|.-++.+++++++|+.
T Consensus 880 p~~~~~~~---~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~ 939 (1228)
T KOG0055|consen 880 PRKSSFKR---GLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAM 939 (1228)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHH
Confidence 88866632 3466665555555544443333 23456788999999999999999875
No 8
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=6.1e-77 Score=787.78 Aligned_cols=874 Identities=13% Similarity=0.110 Sum_probs=584.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1159)
Q Consensus 266 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 345 (1159)
++-..+.+++.++++.++.++..++..+.|+++..+++.+..++. ... ++..+++..++..++.....+...++
T Consensus 51 ~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~--~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~ 124 (1466)
T PTZ00265 51 FKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGEN--VND----IIFSLVLIGIFQFILSFISSFCMDVV 124 (1466)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344567778888899999999888999999999987642211 111 11112222222223333333344555
Q ss_pred HHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhhhHHHHHH
Q 001091 346 GIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1159)
Q Consensus 346 ~~riR~~L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~ 421 (1159)
+.++...+...+|+|.++++.. ..+.|++.+.++.|++.+.+.+. .+..+...++.++.++++++. +.|..+++.
T Consensus 125 ~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~-~sw~Lalv~ 203 (1466)
T PTZ00265 125 TTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLF-KNARLTLCI 203 (1466)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHH
Confidence 6666666667778888877642 33789999999999999988764 344555555555555555443 333555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1159)
Q Consensus 422 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~ 501 (1159)
++++++++.+...+.++.++..++..+..++..+.+.|.++|||+||.|+.|+.+.++.++..+...+...+.....+..
T Consensus 204 l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~ 283 (1466)
T PTZ00265 204 TCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLH 283 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777778888888888888888999999999999999999999999998888765443333322322222222
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHhcC--------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001091 502 AFLFWA--SPTLVSVITFGVCILLKT--------PLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIK 571 (1159)
Q Consensus 502 ~~~~~~--~~~lv~~~~f~~~~~~~~--------~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~ 571 (1159)
...... .-..+.+++||.+.+..+ .++++.+++++........++..+...+..+.++.+|.+||.+.++
T Consensus 284 ~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~ 363 (1466)
T PTZ00265 284 IGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIIN 363 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 111111 122344567888877653 5888988887665555455666666778999999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCC
Q 001091 572 EDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI 650 (1159)
Q Consensus 572 ~~e~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~ 650 (1159)
.++..+........+....|+++|++|+|+++ ++.++|+| ||+|++||++||+||+|||||||+++|+|+++|+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~-----~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~ 438 (1466)
T PTZ00265 364 RKPLVENNDDGKKLKDIKKIQFKNVRFHYDTR-----KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT 438 (1466)
T ss_pred CCCCCCCCCCCccCCCCCcEEEEEEEEEcCCC-----CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC
Confidence 76522111110001112369999999999864 23579999 9999999999999999999999999999999999
Q ss_pred CCcEEEEC-C-------------EEEEEecCCCCCCCcHHHHHhcCCC--------------------------------
Q 001091 651 SGAAIKVH-G-------------KKAYVPQSSWIQTGTIRENILFGKD-------------------------------- 684 (1159)
Q Consensus 651 ~G~i~~v~-g-------------~iayv~Q~pwi~~gTIreNIlfG~~-------------------------------- 684 (1159)
+|+| .++ | +|+||+|+|.+|++||+|||.+|..
T Consensus 439 ~G~I-~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (1466)
T PTZ00265 439 EGDI-IINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAK 517 (1466)
T ss_pred CCeE-EEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccccccccccccccccc
Confidence 9999 884 3 3899999999999999999999742
Q ss_pred --------------------------CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 001091 685 --------------------------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738 (1159)
Q Consensus 685 --------------------------~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~ 738 (1159)
.++++..++++.++++++++.||+|++|.+|++|.+|||||||||+||||++++
T Consensus 518 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~ 597 (1466)
T PTZ00265 518 CAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRN 597 (1466)
T ss_pred ccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcC
Confidence 234667788888899999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccccCEEEEEeCC---------------------
Q 001091 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDG--------------------- 795 (1159)
Q Consensus 739 a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~aD~Iivl~~G--------------------- 795 (1159)
|+|+||||||||||+++++.+ ++.+..+. +|+|+|+|||++++++.||+|++|++|
T Consensus 598 P~ILlLDEpTSaLD~~se~~i-~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~ 676 (1466)
T PTZ00265 598 PKILILDEATSSLDNKSEYLV-QKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKE 676 (1466)
T ss_pred CCEEEEeCcccccCHHHHHHH-HHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccc
Confidence 999999999999999998766 55677665 489999999999999999999999986
Q ss_pred --------------------------eEEEecChHHHHhhcchHHHHHHHHhhhcccCCC-C--CCccc---cc--ccC-
Q 001091 796 --------------------------KIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN-P--PQEDK---CL--SRV- 840 (1159)
Q Consensus 796 --------------------------~I~e~Gt~~eL~~~~~~~~~~l~~~~~~~~~~~~-~--~~~~~---~~--~~~- 840 (1159)
+|+|+|+|+||+++.++.|..+++.+........ + ..+.. .. .+.
T Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 756 (1466)
T PTZ00265 677 NNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSER 756 (1466)
T ss_pred cccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccccccccc
Confidence 5999999999997458899999977643211100 0 00000 00 000
Q ss_pred cc---ccc----chhhh-hccC-CCccCCC-CCCCcc-c-----hh--hcCcc--hHHHHHHHHHHhcchhHHH--HHHH
Q 001091 841 PC---QMS----QITEE-RFAR-PISCGEF-SGRSQD-E-----DT--ELGRV--KWTVYSAFITLVYKGALVP--VILL 898 (1159)
Q Consensus 841 ~~---~~~----~~~~~-~~~~-~~~~~~~-~~~~~~-e-----~~--~~G~v--~~~vy~~Y~~~~~g~~~~~--~~~~ 898 (1159)
.. ... .+... .... ....++. .+..++ + ++ ..... .+..+++|++.......+. +.++
T Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (1466)
T PTZ00265 757 GYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTIIALSILV 836 (1466)
T ss_pred ccccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000 00000 0000 0000000 000000 0 00 00011 1222333332211111111 1111
Q ss_pred HHHHHHHHHhccchhee-ecccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Q 001091 899 CQVLFQALQMGSNYWIA-WATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISF 977 (1159)
Q Consensus 899 ~~~~~~~~~~~~~~wl~-~w~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsF 977 (1159)
...+..+.......++. .+...+.......|..++++++++..++.+++.+++...+.+...+++.++++++++.|++|
T Consensus 837 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~ 916 (1466)
T PTZ00265 837 AGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISF 916 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 11122222222122221 11101111123457777888888888999999999999999999999999999999999999
Q ss_pred ccc--CChhHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH--hhhHH
Q 001091 978 FDS--TPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYI--TTARE 1053 (1159)
Q Consensus 978 FD~--tp~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~i~vi~~~~~~~~~~~iPl~~~~~~~q~~Yl--~tsRe 1053 (1159)
||. +++|++++|+++|++.+...+...+..++..++.+++.++++.+..|.+.++++|+.++......... ...++
T Consensus 917 fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 996 (1466)
T PTZ00265 917 FDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKD 996 (1466)
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 996 89999999999999999999999999999999999998888888899887776665433322211111 12223
Q ss_pred HHHH-------------HhhccchHHHHHHHHhcchhhhhhccchHHHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHH
Q 001091 1054 LARM-------------VGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLL 1120 (1159)
Q Consensus 1054 LkRL-------------~~~srSPi~shf~Etl~Gl~tIRAf~~e~~f~~~~~~~lD~~~~~~~~~~~~~rWL~~rldll 1120 (1159)
.++. +....+-..++++|+++|+.|||+|+.|++|.+++.+..+...+.........-++..-.+++
T Consensus 997 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1076 (1466)
T PTZ00265 997 VEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSA 1076 (1466)
T ss_pred HHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 111233457899999999999999999999999999999888776664433332222223333
Q ss_pred HHHHHHHH-HHHHHhcCCCCCCHHHHHHHHHHhc
Q 001091 1121 FNFAFFLV-LIILVTLPRSAIDPSKFLQLFISIS 1153 (1159)
Q Consensus 1121 ~~~~~~~~-~~~~v~~~~~~~~~g~v~~~~~~is 1153 (1159)
..+..+++ .+...+..+|.+++|.++.+++.+.
T Consensus 1077 ~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~ 1110 (1466)
T PTZ00265 1077 QLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFL 1110 (1466)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 22211111 1112223467889987666554443
No 9
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-79 Score=721.66 Aligned_cols=548 Identities=22% Similarity=0.293 Sum_probs=445.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSG-KHDHSSY-HYGLVLASVFLFAKTVESLTQRQWYFGAN 343 (1159)
Q Consensus 266 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~-~~~~~~~-~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 343 (1159)
++.+.+..|+.+..+.++.++..+....-|.++.++++.+.. .+..... +....++++.+...+...+...++.+...
T Consensus 138 l~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~ 217 (716)
T KOG0058|consen 138 LLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGE 217 (716)
T ss_pred HHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788999999999999999999999999999998766 2220111 21333344444444444444455555667
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHH
Q 001091 344 RIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1159)
Q Consensus 344 r~~~riR~~L~~~iy~K~L~ls~~~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l 422 (1159)
|+..|+|..+...+.++-+..-+. ..+||++++++.|++.+.+.+. ++.+..-..++.+.++.++...- |-.++..+
T Consensus 218 rv~~rlR~~lF~sil~QdiaFFD~-nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S-~~Ltlv~~ 295 (716)
T KOG0058|consen 218 RVVARLRTDLFRSLLRQDIAFFDE-NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLS-WRLTLVTL 295 (716)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcc-CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh-HHHHHHHH
Confidence 777777777766666655544333 3799999999999999988765 56666666677777766655432 25556667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIA 502 (1159)
Q Consensus 423 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~ 502 (1159)
+.+++++.+...++++.++..++.+++..+-.+...|.|++||+||+|+.|+.-.++..+.-+.-.+..+|.....+...
T Consensus 296 i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~ 375 (716)
T KOG0058|consen 296 IVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFF 375 (716)
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Confidence 77777788888899999999999999999999999999999999999999976544444322222222222222222111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-C
Q 001091 503 --FLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP-I 579 (1159)
Q Consensus 503 --~~~~~~~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~-~ 579 (1159)
+.+......++++.+|.+++..+.+|+|...+++.+-..+..++..+...++.++++..+.+|+.++++.+++.+. .
T Consensus 376 ~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G 455 (716)
T KOG0058|consen 376 GSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTG 455 (716)
T ss_pred hHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCC
Confidence 1122233567788899999999999999999999999999999999999999999999999999999998873222 1
Q ss_pred CCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEEC
Q 001091 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1159)
Q Consensus 580 ~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~ 658 (1159)
...|. .-.+.|+|+|++|+||.+ ++.++|+| ||+|+|||.||+|||+||||||+.++|+++|+|++|+| .+|
T Consensus 456 ~~~p~-~~~G~IeF~~VsFaYP~R-----p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I-llD 528 (716)
T KOG0058|consen 456 TLAPD-HLQGVIEFEDVSFAYPTR-----PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI-LLD 528 (716)
T ss_pred ccccc-cccceEEEEEeeeecCCC-----CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE-EEC
Confidence 22232 346789999999999998 77899999 99999999999999999999999999999999999999 999
Q ss_pred C-------------EEEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHH
Q 001091 659 G-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1159)
Q Consensus 659 g-------------~iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGG 724 (1159)
| +||+|.|||.||++||+|||.||.+ .++|+.+++.+.|.-+++|..+|+|++|.|||+|..||||
T Consensus 529 G~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGG 608 (716)
T KOG0058|consen 529 GVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGG 608 (716)
T ss_pred CeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccch
Confidence 8 4999999999999999999999986 5778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChH
Q 001091 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1159)
Q Consensus 725 QKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~ 804 (1159)
|||||||||||++||.|+||||+|||||++.+ +++++++...++|+|||+|+||++++++||+|+|+++|+|+|.|+|+
T Consensus 609 QKQRIAIARALlr~P~VLILDEATSALDaeSE-~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~ 687 (716)
T KOG0058|consen 609 QKQRIAIARALLRNPRVLILDEATSALDAESE-YLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHD 687 (716)
T ss_pred HHHHHHHHHHHhcCCCEEEEechhhhcchhhH-HHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHH
Confidence 99999999999999999999999999999984 67899999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHhhh
Q 001091 805 DLIADQNSELVRQMKAHRK 823 (1159)
Q Consensus 805 eL~~~~~~~~~~l~~~~~~ 823 (1159)
||+++.++.|.++++.+..
T Consensus 688 eLl~~~~gly~~Lv~~q~~ 706 (716)
T KOG0058|consen 688 ELLSKPNGLYAKLVQRQLD 706 (716)
T ss_pred HHhhCcccHHHHHHHHhcc
Confidence 9999666899999987654
No 10
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.2e-76 Score=735.58 Aligned_cols=541 Identities=19% Similarity=0.257 Sum_probs=425.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (1159)
Q Consensus 265 l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r 344 (1159)
.++.+.+.+++.++...++.++..++..+.|++++.+++.+..++. .... .+.++.++++..++..++.....+...+
T Consensus 12 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (588)
T PRK11174 12 WLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENI-PREA-LLPPFILLILLFVLRALLAWLRERVGFK 89 (588)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556678888999999999999999999999999999997642211 1111 2223334444555566665555566678
Q ss_pred HHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhhhHHHHH
Q 001091 345 IGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1159)
Q Consensus 345 ~~~riR~~L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~ 420 (1159)
.+.++...+...+|+|.++++.. ..++|+++|++++|++++.+++. .+..++...+..++++++++. ++|..+++
T Consensus 90 ~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~l~ 168 (588)
T PRK11174 90 AGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFP-INWAAGLI 168 (588)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 89999999999999999998764 23899999999999999998764 455556555555555444442 33244444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHH----HHHHHHHHHHHHHHH
Q 001091 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLL----RLREIERDSLKKYLY 496 (1159)
Q Consensus 421 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~----~~R~~E~~~l~~~~~ 496 (1159)
.++++++...+...+.++.++..++.++..++..+.+.|.++|+++||.|++|+.+.++++ +.|+.+.+..+....
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (588)
T PRK11174 169 LLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFL 248 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555566778888888899999999999999999999999999999998887774 445555444443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 497 TCSAIAFLFWASPTLVSVITFGVCILLKTPLTSG---------AVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQ 567 (1159)
Q Consensus 497 ~~~~~~~~~~~~~~lv~~~~f~~~~~~~~~Lt~~---------~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~ 567 (1159)
......+.... +.+ .++.++.+.+. +.++.| .+++++.+...+..|+..++..+..+.+++++.+||.
T Consensus 249 ~~~~~~~~~~~-~~~-~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~ 325 (588)
T PRK11174 249 SSAVLEFFASI-SIA-LVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLV 325 (588)
T ss_pred HHHHHHHHHHH-HHH-HHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222222211 111 22233333333 344444 4455556777788999999999999999999999999
Q ss_pred HHhcccCCCCCCCCC-CCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhC
Q 001091 568 EFIKEDNQKKPITEP-TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILG 645 (1159)
Q Consensus 568 ~fL~~~e~~~~~~~~-~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llG 645 (1159)
++++.++.++..... ........|+++|++|.|+++ +++|+| |++++||+++|||||||||||||+++|+|
T Consensus 326 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~-------~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 326 TFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDG-------KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred HHHcCCCcccCCCccccCCCCCceEEEEeeEEeccCC-------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 999876522111111 111123469999999887643 578999 99999999999999999999999999999
Q ss_pred CccCCCCcEEEECC-------------EEEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCC
Q 001091 646 EIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDL 711 (1159)
Q Consensus 646 e~~~~~G~i~~v~g-------------~iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~ 711 (1159)
++ |.+|+| .++| +|+||||+||||+|||||||++|+| .++++++++++.|++++|++.||+|++
T Consensus 399 ~~-p~~G~I-~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~d 476 (588)
T PRK11174 399 FL-PYQGSL-KINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLD 476 (588)
T ss_pred CC-CCCcEE-EECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccc
Confidence 99 899999 9988 5999999999999999999999975 899999999999999999999999999
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEE
Q 001091 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLV 791 (1159)
Q Consensus 712 T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iiv 791 (1159)
|.|||+|.+|||||||||+||||+++||+|+||||||||||++++++|.+ .+.++.++||+|+||||++.++.||+|++
T Consensus 477 T~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~-~l~~~~~~~TvIiItHrl~~i~~aD~Iiv 555 (588)
T PRK11174 477 TPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ-ALNAASRRQTTLMVTHQLEDLAQWDQIWV 555 (588)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHhCCCEEEEEecChHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999998865 67888899999999999999999999999
Q ss_pred EeCCeEEEecChHHHHhhcchHHHHHHHHhh
Q 001091 792 MKDGKIEQSGKYEDLIADQNSELVRQMKAHR 822 (1159)
Q Consensus 792 l~~G~I~e~Gt~~eL~~~~~~~~~~l~~~~~ 822 (1159)
|++|+|+|+|+|+||++ .++.|.+++..+.
T Consensus 556 l~~G~i~e~G~~~eL~~-~~~~y~~l~~~q~ 585 (588)
T PRK11174 556 MQDGQIVQQGDYAELSQ-AGGLFATLLAHRQ 585 (588)
T ss_pred EeCCeEeecCCHHHHHh-cchHHHHHHHHhh
Confidence 99999999999999998 7889999886654
No 11
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=4.2e-75 Score=714.01 Aligned_cols=543 Identities=23% Similarity=0.283 Sum_probs=454.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 263 TSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGA 342 (1159)
Q Consensus 263 ~sl~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~ 342 (1159)
.+.++..++.+++.+....+..++..++.++.|++.+.++|.+-.+.+ .+ ....+++++.+..+.+.+....-.+..
T Consensus 142 ~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~-~~--tL~vl~ig~~~~~l~~~~l~~lr~~~~ 218 (709)
T COG2274 142 LSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS-RS--TLTVLAIGLLLAALFEALLRLLRTYLI 218 (709)
T ss_pred hHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-hh--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778889999999999999999999999999999998765543 22 245566667777777777765556667
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHhHHhhhHH
Q 001091 343 NRIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHR-IWLLPVQVFLALVILYKNLGAAP 417 (1159)
Q Consensus 343 ~r~~~riR~~L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~~-~~~-~w~~pl~i~ia~~lL~~~lg~~~ 417 (1159)
.+++.|+...+...+|+|.++++.. .|++||++++++ |.+.|.+++.. +.. +...++-++ .+++++..-+ ..
T Consensus 219 ~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i-~l~vm~~ys~-~L 295 (709)
T COG2274 219 AHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALI-FLAVMFLYSW-KL 295 (709)
T ss_pred HHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HH
Confidence 7889999999999999999999864 469999999987 89999998752 222 222232222 2333333334 66
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 418 AFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYT 497 (1159)
Q Consensus 418 ~l~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~ 497 (1159)
++++++.+++.+.+..++.+..++..++.++...++.+...|.++||++||..+-|+.+..++++.-.+..+...+....
T Consensus 296 ~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~ 375 (709)
T COG2274 296 TLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKL 375 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 77777788888888888888999999999999999999999999999999999999999999988766666554444443
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001091 498 CSAIAFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (1159)
Q Consensus 498 ~~~~~~~~~~~~--~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~ 575 (1159)
............ .-+.+++||++.++++.+|.|..+++.++...+..|+..+.+....+.+++++.+|+.+.++.|.+
T Consensus 376 ~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E 455 (709)
T COG2274 376 ALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPE 455 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 333322222222 224567899999999999999999999999999999999999999999999999999999998763
Q ss_pred CCCCC-CCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCc
Q 001091 576 KKPIT-EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGA 653 (1159)
Q Consensus 576 ~~~~~-~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~ 653 (1159)
.+... ....+..++.|+++|++|+|+.+ ++++|+| |++|++||++||||+||||||||+|+|+|.|+|.+|+
T Consensus 456 ~~~~~~~~~~~~~~g~I~~~nvsf~y~~~------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~ 529 (709)
T COG2274 456 QEGDKTLIHLPKLQGEIEFENVSFRYGPD------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGR 529 (709)
T ss_pred cccccccccccccCceEEEEEEEEEeCCC------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 22211 11223345789999999999876 3579999 9999999999999999999999999999999999999
Q ss_pred EEEECC-------------EEEEEecCCCCCCCcHHHHHhcCCCCCh-HHHHHHHHHhccchHHHhccCCCCccccCCCC
Q 001091 654 AIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQ-SFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1159)
Q Consensus 654 i~~v~g-------------~iayv~Q~pwi~~gTIreNIlfG~~~d~-~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~ 719 (1159)
| .+|| .|+||+||+.+|+|||||||.+|.|... |...++++.++.++|++.+|.|++|.|||+|.
T Consensus 530 I-~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~ 608 (709)
T COG2274 530 I-LLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGA 608 (709)
T ss_pred E-EECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCC
Confidence 9 9998 5999999999999999999999998644 77777888888999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEE
Q 001091 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1159)
Q Consensus 720 ~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e 799 (1159)
||||||||||+||||+++||+|+||||||||||+++++.|.++ +.....|||+|+||||++++++||+|+||++|+|+|
T Consensus 609 ~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~-L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~ 687 (709)
T COG2274 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN-LLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVE 687 (709)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHH-HHHHhcCCeEEEEEccchHhhhccEEEEccCCceec
Confidence 9999999999999999999999999999999999999888765 677888999999999999999999999999999999
Q ss_pred ecChHHHHhhcchHHHHHHHH
Q 001091 800 SGKYEDLIADQNSELVRQMKA 820 (1159)
Q Consensus 800 ~Gt~~eL~~~~~~~~~~l~~~ 820 (1159)
+|+|+|+++ .++.|.+++..
T Consensus 688 ~gs~~ell~-~~g~y~~l~~~ 707 (709)
T COG2274 688 QGSHEELLA-QGGLYARLYQQ 707 (709)
T ss_pred cCCHHHHHH-hcChHHHHHhc
Confidence 999999999 78999888754
No 12
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.5e-72 Score=709.61 Aligned_cols=538 Identities=20% Similarity=0.237 Sum_probs=433.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (1159)
Q Consensus 265 l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r 344 (1159)
+++..++.+++.++...++.++..++.++.|++++.++|.+..... .. . .+.+++++++..++..++.....+...+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~~-~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (686)
T TIGR03797 126 LLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD-RS-L-LVQIALALLAAAVGAAAFQLAQSLAVLR 202 (686)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-hh-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555567788889899999999999999999999999998754322 11 1 2334444444555555555555556778
Q ss_pred HHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHhHHhhhHHHH
Q 001091 345 IGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IH-RIWLLPVQVFLALVILYKNLGAAPAF 419 (1159)
Q Consensus 345 ~~~riR~~L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~~-~~-~~w~~pl~i~ia~~lL~~~lg~~~~l 419 (1159)
++.++...+...+|+|.++++.. .+++|+++++++ |++.+.+++.. +. .+...++ .++++++++..-+ +.++
T Consensus 203 ~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~-~l~l 279 (686)
T TIGR03797 203 LETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIF-ALLNLGLMFYYSW-KLAL 279 (686)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHH
Confidence 89999999999999999998753 458999999997 89999887643 22 2233333 3333444443333 5555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCS 499 (1159)
Q Consensus 420 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~ 499 (1159)
+.++++++..++...+.+..++..++.++..+++.+...|.++|+++||.++.|+.+.+++++..++..+...+......
T Consensus 280 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (686)
T TIGR03797 280 VAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIEN 359 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666777788888899999999999999999999999999999999999888887755444443333333222
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 001091 500 AIAFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK 577 (1159)
Q Consensus 500 ~~~~~~~~~~--~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~ 577 (1159)
.......... ..+.++.++.+.+..+.+|.|.++++..++..+..|+..++..+..+.+++++++|+.++++.+++.+
T Consensus 360 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 439 (686)
T TIGR03797 360 LLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVD 439 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 2222211111 22334567778788899999999999999999999999999999999999999999999998765222
Q ss_pred CCCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEE
Q 001091 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1159)
Q Consensus 578 ~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~ 656 (1159)
.....+ ....+.|+++|++|+|+++ ++++|+| |++|++||++||||++|||||||+++|+|+++|.+|+| .
T Consensus 440 ~~~~~~-~~~~~~I~~~nvsf~Y~~~------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I-~ 511 (686)
T TIGR03797 440 EAKTDP-GKLSGAIEVDRVTFRYRPD------GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSV-F 511 (686)
T ss_pred cCcCCC-CCCCceEEEEEEEEEcCCC------CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-E
Confidence 111111 1123579999999999754 3679999 99999999999999999999999999999999999999 8
Q ss_pred ECC-------------EEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCH
Q 001091 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1159)
Q Consensus 657 v~g-------------~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSG 723 (1159)
++| +++||||+|++|+|||||||.+|+|.++++.+++++.|+++++++.+|+|++|.|||+|.+|||
T Consensus 512 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSG 591 (686)
T TIGR03797 512 YDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSG 591 (686)
T ss_pred ECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence 987 4899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecCh
Q 001091 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1159)
Q Consensus 724 GQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~ 803 (1159)
||||||+||||+|++|+|+||||||||||+++++++.+. ++.. ++|+|+||||++.++.||+|++|++|+|+|.|+|
T Consensus 592 GQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~-L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~ 668 (686)
T TIGR03797 592 GQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSES-LERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTY 668 (686)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH-HHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999988765 5544 6899999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHH
Q 001091 804 EDLIADQNSELVRQMKA 820 (1159)
Q Consensus 804 ~eL~~~~~~~~~~l~~~ 820 (1159)
+||++ .++.|.++.+.
T Consensus 669 ~~Ll~-~~~~y~~l~~~ 684 (686)
T TIGR03797 669 DELMA-REGLFAQLARR 684 (686)
T ss_pred HHHHh-CCcHHHHHHHh
Confidence 99998 78889888753
No 13
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=7.9e-73 Score=715.27 Aligned_cols=538 Identities=16% Similarity=0.207 Sum_probs=437.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (1159)
Q Consensus 265 l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r 344 (1159)
.++..++.+++.+....+..++..++.++.|++++.++|.+..... .. . .+.+++++++..++..+......+...+
T Consensus 144 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~~-~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (710)
T TIGR03796 144 ALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR-QD-W-LRPLLLGMGLTALLQGVLTWLQLYYLRR 220 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-hh-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566677788888888999999999999999999997654332 11 1 2334444444555556665555566778
Q ss_pred HHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhhhHHHHH
Q 001091 345 IGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1159)
Q Consensus 345 ~~~riR~~L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~ 420 (1159)
++.++...+...+|+|.++++.. .+++|+++++++.| +.+.+++. .+.......+.+++.+++++..-+ +.+++
T Consensus 221 ~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~li 298 (710)
T TIGR03796 221 LQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDP-VLTLI 298 (710)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 89999999999999999998753 45999999999988 67887664 344444444455555555544333 55566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (1159)
Q Consensus 421 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~ 500 (1159)
.++.+++.+.+...+.++..+..++.++..+++.+.+.|.++|+++||.+++|+.+.+++++.++++.+...+.......
T Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (710)
T TIGR03796 299 GIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQI 378 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666667777888888888999999999999999999999999999999999999988777766655444433332
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 001091 501 IAFLFWAS--PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP 578 (1159)
Q Consensus 501 ~~~~~~~~--~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~ 578 (1159)
........ -..+.+++++++.+..+.+|.|.++++..++..+..|+..++..+..+.+++++++|+.++++.+++.+.
T Consensus 379 ~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 458 (710)
T TIGR03796 379 LGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLL 458 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 22221111 1223456678888889999999999999999999999999999999999999999999999987652211
Q ss_pred CC-------CCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCC
Q 001091 579 IT-------EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI 650 (1159)
Q Consensus 579 ~~-------~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~ 650 (1159)
.. ..+.....+.|+++|++|+|++. ++++|+| ||+|++||++|||||+|||||||+++|+|+++|+
T Consensus 459 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~ 532 (710)
T TIGR03796 459 EEEEAPAAGSEPSPRLSGYVELRNITFGYSPL------EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW 532 (710)
T ss_pred ccccccccccccCCCCCCeEEEEEEEEecCCC------CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 11 01101224579999999999864 3679999 9999999999999999999999999999999999
Q ss_pred CCcEEEECC-------------EEEEEecCCCCCCCcHHHHHhcCC-CCChHHHHHHHHHhccchHHHhccCCCCccccC
Q 001091 651 SGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1159)
Q Consensus 651 ~G~i~~v~g-------------~iayv~Q~pwi~~gTIreNIlfG~-~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe 716 (1159)
+|+| .++| +++||||+|++|+|||||||.+|. +.++++++++++.|+++++++.+|+|++|.|||
T Consensus 533 ~G~I-~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e 611 (710)
T TIGR03796 533 SGEI-LFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAE 611 (710)
T ss_pred CcEE-EECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceecc
Confidence 9999 8887 589999999999999999999886 478999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCe
Q 001091 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1159)
Q Consensus 717 ~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~ 796 (1159)
+|.||||||||||+||||++++|+|+||||||||||+++++++.+.. .. +++|+|+||||++.++.||+|++|++|+
T Consensus 612 ~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l-~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~ 688 (710)
T TIGR03796 612 GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNL-RR--RGCTCIIVAHRLSTIRDCDEIIVLERGK 688 (710)
T ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHH-Hh--cCCEEEEEecCHHHHHhCCEEEEEeCCE
Confidence 99999999999999999999999999999999999999999987764 33 5899999999999999999999999999
Q ss_pred EEEecChHHHHhhcchHHHHHH
Q 001091 797 IEQSGKYEDLIADQNSELVRQM 818 (1159)
Q Consensus 797 I~e~Gt~~eL~~~~~~~~~~l~ 818 (1159)
|++.|+|+||++ .++.|.+++
T Consensus 689 i~~~G~~~~Ll~-~~~~y~~l~ 709 (710)
T TIGR03796 689 VVQRGTHEELWA-VGGAYARLI 709 (710)
T ss_pred EEEecCHHHHHH-cCCcHHHHh
Confidence 999999999998 778888765
No 14
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.7e-72 Score=709.25 Aligned_cols=534 Identities=19% Similarity=0.255 Sum_probs=412.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSY-HYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (1159)
Q Consensus 269 l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~-~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~ 347 (1159)
+++.+++.+....++.++..++..+.|++++.++|.+..+.+.... ...+++++..++..++..+....+.+ .+.
T Consensus 155 ~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~ 230 (711)
T TIGR00958 155 LSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNY----TMA 230 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 4456677788888899999999999999999999988643320111 10111111112222222222223333 344
Q ss_pred HHHHHHHHHHHHHHhcccC---CCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHH
Q 001091 348 RVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (1159)
Q Consensus 348 riR~~L~~~iy~K~L~ls~---~~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l~ 423 (1159)
++...+...+|+|.++.+. ...++|+++|++++|++.+.+.+. .+..++...+++++++++++. ++|..+++.++
T Consensus 231 ~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~-~s~~l~l~~l~ 309 (711)
T TIGR00958 231 RINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLW-LSPRLTMVTLI 309 (711)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHH
Confidence 4444555666777777754 334899999999999999988764 455566666666666555554 33244555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAF 503 (1159)
Q Consensus 424 ~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~ 503 (1159)
.+++...+...+.++.++..++.++..++..+...|.++|+++||.|++|+.+.+++++..++-.+..++.....+....
T Consensus 310 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (711)
T TIGR00958 310 NLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLW 389 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666777788888888888899999999999999999999999999987777665443332222222111111111
Q ss_pred HHH--HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC
Q 001091 504 LFW--ASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITE 581 (1159)
Q Consensus 504 ~~~--~~~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~ 581 (1159)
... .....+.++.++.+.+..+.+++|.+++++.+...+..|+..++..+..+.+++++.+|+.++++.+++.+....
T Consensus 390 ~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~ 469 (711)
T TIGR00958 390 TTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT 469 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 111 111223445677788888999999999999999999999999999999999999999999999987653221111
Q ss_pred CCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-
Q 001091 582 PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG- 659 (1159)
Q Consensus 582 ~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g- 659 (1159)
....+..+.|+++|++|+|+++ ++.++|+| |++++|||++|||||+|||||||+++|+|+++|.+|+| .++|
T Consensus 470 ~~~~~~~~~I~~~nVsf~Y~~~-----~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I-~idg~ 543 (711)
T TIGR00958 470 LAPLNLEGLIEFQDVSFSYPNR-----PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV-LLDGV 543 (711)
T ss_pred CCCCCCCCeEEEEEEEEECCCC-----CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE-EECCE
Confidence 1111223569999999999864 34689999 99999999999999999999999999999999999999 9987
Q ss_pred ------------EEEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHH
Q 001091 660 ------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1159)
Q Consensus 660 ------------~iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQK 726 (1159)
+++||||+|++|+|||||||.+|.+ .++++.+++++.|+++++++.+|+|++|.+||+|.+||||||
T Consensus 544 ~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQk 623 (711)
T TIGR00958 544 PLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQK 623 (711)
T ss_pred EHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHH
Confidence 5899999999999999999999965 678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHH
Q 001091 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDL 806 (1159)
Q Consensus 727 QRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL 806 (1159)
|||+||||+++||+|+||||||||||+++++++.+ ....++||+|+||||++.++.||+|++|+||+|+|+|+|+||
T Consensus 624 QRlalARALl~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL 700 (711)
T TIGR00958 624 QRIAIARALVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQL 700 (711)
T ss_pred HHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHH
Confidence 99999999999999999999999999999988866 233579999999999999999999999999999999999999
Q ss_pred HhhcchHHHHH
Q 001091 807 IADQNSELVRQ 817 (1159)
Q Consensus 807 ~~~~~~~~~~l 817 (1159)
++ +++.|.++
T Consensus 701 ~~-~~~~y~~l 710 (711)
T TIGR00958 701 ME-DQGCYKHL 710 (711)
T ss_pred Hh-CCCchHhc
Confidence 98 67777765
No 15
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=4.7e-72 Score=706.09 Aligned_cols=531 Identities=22% Similarity=0.309 Sum_probs=432.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 264 SLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGAN 343 (1159)
Q Consensus 264 sl~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 343 (1159)
+.++..++.+++.+....++.++..++.++.|++++.++|.+..... ... .+.+++++++..++..+......+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (694)
T TIGR03375 136 HWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA--FET-LWVLAIGVALAIVFDFVLKTLRSYFLD 212 (694)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--HhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888888888999999999999999999999998653322 111 223333444444455555544455667
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCC--CCChHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHhHHhhhHHHH
Q 001091 344 RIGIRVRSALTVLIYKRSMAIKFA--GPSSGIIINMINVDVERIGDFFLY-I-HRIWLLPVQVFLALVILYKNLGAAPAF 419 (1159)
Q Consensus 344 r~~~riR~~L~~~iy~K~L~ls~~--~~~~G~i~nlms~D~~~i~~~~~~-~-~~~w~~pl~i~ia~~lL~~~lg~~~~l 419 (1159)
+++.++...+...+|+|.++++.. .+++|++++++ +|++.+.+++.. + ..+...+. +++.+++++..-+ ..++
T Consensus 213 ~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~-~l~l 289 (694)
T TIGR03375 213 VAGKKADLILSAKLFERVLGLRMEARPASVGSFANQL-REFESVRDFFTSATLTALIDLPF-ALLFLLVIAIIGG-PLVW 289 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHh-HHHH
Confidence 888899999999999999998754 34899999999 799999987642 2 22333333 3333333443333 5566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCS 499 (1159)
Q Consensus 420 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~ 499 (1159)
+.++++++.+++...+.++.++..++.++..+++.+.+.|.++|+++||.+++|+.+.+++++..++..+...+......
T Consensus 290 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (694)
T TIGR03375 290 VPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSN 369 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777778888889999999999999999999999999999999999999999998877666655555444433
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 001091 500 AIAFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK 577 (1159)
Q Consensus 500 ~~~~~~~~~~--~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~ 577 (1159)
.......... ..+.++++|++.+..+.+|.|.+++++.++..+..|+..++..+..+.+++++.+|+.++++.+++.+
T Consensus 370 ~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~ 449 (694)
T TIGR03375 370 LATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERP 449 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 3322222221 22335667888888899999999999999999999999999999999999999999999998765221
Q ss_pred CCCC-CCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEE
Q 001091 578 PITE-PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI 655 (1159)
Q Consensus 578 ~~~~-~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~ 655 (1159)
.... .+.....+.|+++|++|+|+++ .+++|+| |++|++||++||||++|||||||+++|+|+|+|.+|+|
T Consensus 450 ~~~~~~~~~~~~~~I~~~~vsf~Y~~~------~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I- 522 (694)
T TIGR03375 450 EGTRFLHRPRLQGEIEFRNVSFAYPGQ------ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV- 522 (694)
T ss_pred CCCCCCCCCCccceEEEEEEEEEeCCC------CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-
Confidence 1111 1111223579999999999754 3579999 99999999999999999999999999999999999999
Q ss_pred EECC-------------EEEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCC
Q 001091 656 KVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1159)
Q Consensus 656 ~v~g-------------~iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~L 721 (1159)
.++| +++||||+|++|+|||||||.+|++ .++++++++++.|+++++++.+|+|++|.|||+|.+|
T Consensus 523 ~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~L 602 (694)
T TIGR03375 523 LLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSL 602 (694)
T ss_pred EECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCC
Confidence 8987 5899999999999999999999987 8999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEec
Q 001091 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 722 SGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~G 801 (1159)
||||||||+||||++++|+|+||||||||||++++++|.+ .+....+++|+|+||||+++++.||+|++|++|+|+|+|
T Consensus 603 SgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~-~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G 681 (694)
T TIGR03375 603 SGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKD-RLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADG 681 (694)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeC
Confidence 9999999999999999999999999999999999988755 577778899999999999999999999999999999999
Q ss_pred ChHHHHh
Q 001091 802 KYEDLIA 808 (1159)
Q Consensus 802 t~~eL~~ 808 (1159)
+|+||++
T Consensus 682 ~~~eLl~ 688 (694)
T TIGR03375 682 PKDQVLE 688 (694)
T ss_pred CHHHHHH
Confidence 9999987
No 16
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.3e-72 Score=694.01 Aligned_cols=541 Identities=20% Similarity=0.281 Sum_probs=413.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHHHHHHHHHHHH--HHHHHH--HHHHH
Q 001091 271 HAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDH-SSYHYGLVLASVFLFAKTVESLT--QRQWYF--GANRI 345 (1159)
Q Consensus 271 ~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~-~~~~~g~~l~~~l~~~~~~~~l~--~~~~~~--~~~r~ 345 (1159)
+..|+.++++.+.+++.....-+..+++..+++-...++.+ ....... ++..+++..+...+. .++|+| ...++
T Consensus 660 ~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~-~al~f~~l~~~~~i~~~~q~~~f~~~ge~L 738 (1228)
T KOG0055|consen 660 KPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRA-WALIFLGLGIVSGITNFLQHYFFGIAGEKL 738 (1228)
T ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777766655556677777655433321 1111111 333322222222222 233443 35667
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHH
Q 001091 346 GIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1159)
Q Consensus 346 ~~riR~~L~~~iy~K~L~ls~~~~~~G~i~nlms~D~~~i~~~~~~-~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l~~ 424 (1159)
..|+|......+.++-..+-+..+++|.+.+++++|+..+...+.. +..+.....-+++++.+-+ ..||-.++.++++
T Consensus 739 t~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf-~~~W~lalv~la~ 817 (1228)
T KOG0055|consen 739 TKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAF-IYGWRLALVVLAT 817 (1228)
T ss_pred HHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 7777765544444444444344443399999999999888765532 2222222222222222211 2344566777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 001091 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRL-REIERDSLKKYLYTCSAIAF 503 (1159)
Q Consensus 425 ~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~-R~~E~~~l~~~~~~~~~~~~ 503 (1159)
.+++....+...+.+.....+.+++.++-.+...|++.|||+||.++.|++|.+...+. ++-.....++... .++...
T Consensus 818 ~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i-~gl~f~ 896 (1228)
T KOG0055|consen 818 FPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLI-SGLGFG 896 (1228)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 88888888888889999999999999999999999999999999999999988777653 3323333333332 222222
Q ss_pred HHHHHHHH--HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CCCCC
Q 001091 504 LFWASPTL--VSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN--QKKPI 579 (1159)
Q Consensus 504 ~~~~~~~l--v~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e--~~~~~ 579 (1159)
+..+...+ +...+||.+++..+..++..+|.++..+..-...+.+.....+.+..|+.|..+|.+.++.++ +++..
T Consensus 897 ~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~ 976 (1228)
T KOG0055|consen 897 FSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDST 976 (1228)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 22222222 335667888888899999999999988888888888888889999999999999999999876 22221
Q ss_pred CCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEEC
Q 001091 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1159)
Q Consensus 580 ~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~ 658 (1159)
.....+.-.+.|+++|++|+||.+ ++.++++| |+++++||.+|+||||||||||.+.+|.++|+|++|.| .+|
T Consensus 977 ~~~~~~~~~G~I~~~~V~F~YPsR-----P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V-~ID 1050 (1228)
T KOG0055|consen 977 SGGKLPNVKGDIEFRNVSFAYPTR-----PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKV-KID 1050 (1228)
T ss_pred CCCccccceeEEEEeeeEeeCCCC-----CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE-EEC
Confidence 111122345789999999999988 78899999 99999999999999999999999999999999999999 998
Q ss_pred C-------------EEEEEecCCCCCCCcHHHHHhcC-CCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHH
Q 001091 659 G-------------KKAYVPQSSWIQTGTIRENILFG-KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1159)
Q Consensus 659 g-------------~iayv~Q~pwi~~gTIreNIlfG-~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGG 724 (1159)
| ++|.|+|+|.|||+||||||++| ...++++..++++.+..+++|..||+|+||.|||||.+||||
T Consensus 1051 g~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGG 1130 (1228)
T KOG0055|consen 1051 GVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGG 1130 (1228)
T ss_pred CcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCch
Confidence 8 48999999999999999999999 346888888888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChH
Q 001091 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1159)
Q Consensus 725 QKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~ 804 (1159)
||||||||||+.+||+|+||||+|||||+++++ ++|++++....|||+|+|+||++++++||.|.|++||+|+|+|||+
T Consensus 1131 QKQRIAIARAilRnPkILLLDEATSALDseSEr-vVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~ 1209 (1228)
T KOG0055|consen 1131 QKQRIAIARAILRNPKILLLDEATSALDSESER-VVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHD 1209 (1228)
T ss_pred HHHHHHHHHHHHcCCCeeeeeccchhhhhhhHH-HHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHH
Confidence 999999999999999999999999999999965 7899999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHhh
Q 001091 805 DLIADQNSELVRQMKAHR 822 (1159)
Q Consensus 805 eL~~~~~~~~~~l~~~~~ 822 (1159)
||++ +++.|.+|++.|.
T Consensus 1210 ~L~~-~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1210 ELLA-KRGIYFRLVQLQS 1226 (1228)
T ss_pred HHHh-CCCchHHHhhhcc
Confidence 9999 9999999987653
No 17
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=8e-71 Score=696.33 Aligned_cols=536 Identities=22% Similarity=0.269 Sum_probs=425.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1159)
Q Consensus 266 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 345 (1159)
++..++.+++.++...+..++..++.++.|++++.++|.+..... ... .+.+++++++..++..++.....+...++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (708)
T TIGR01193 147 FIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM--MGT-LGIISIGLIIAYIIQQILSYIQIFLLNVL 223 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556678888888888999999999999999999997654332 111 22233333444444555544444556778
Q ss_pred HHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHhhhHHHHHH
Q 001091 346 GIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1159)
Q Consensus 346 ~~riR~~L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~~-~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~ 421 (1159)
+.++...+...+|+|.++++.. .+++|+++++++ |++.+.+++.. ........+.+++.+++++. ++|+.+++.
T Consensus 224 ~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~li~ 301 (708)
T TIGR01193 224 GQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVR-QNMLLFLLS 301 (708)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHH
Confidence 8888888999999999998753 459999999998 99999887642 22222222233333333333 232445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 001091 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYT---- 497 (1159)
Q Consensus 422 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~---- 497 (1159)
++++++...+...+.++.++..++.++..+++.+...|.++|+++||.+++|+.+.+++++..++..+...+....
T Consensus 302 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (708)
T TIGR01193 302 LLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQ 381 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666777888888999999999999999999999999999999999998888776544333322222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 001091 498 CSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK 577 (1159)
Q Consensus 498 ~~~~~~~~~~~~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~ 577 (1159)
.....++... ..+.++++|++.+..+.+|+|.++++..+...+..|+..+...+..+.+++++.+|+.++++.+++.+
T Consensus 382 ~~~~~~~~~~--~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 459 (708)
T TIGR01193 382 QAIKAVTKLI--LNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFI 459 (708)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 2222222212 22345678888888999999999999999999999999999999999999999999999998765221
Q ss_pred -CCCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEE
Q 001091 578 -PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI 655 (1159)
Q Consensus 578 -~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~ 655 (1159)
.....+..+..+.|+++|++|+|+++ +++|+| |++|++||++||+||+|||||||+++|+|+++|++|+|
T Consensus 460 ~~~~~~~~~~~~~~I~~~~vsf~y~~~-------~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I- 531 (708)
T TIGR01193 460 NKKKRTELNNLNGDIVINDVSYSYGYG-------SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEI- 531 (708)
T ss_pred ccccccCCCCCCCcEEEEEEEEEcCCC-------CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEE-
Confidence 11111112234579999999999743 578999 99999999999999999999999999999999999999
Q ss_pred EECC-------------EEEEEecCCCCCCCcHHHHHhcCC--CCChHHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 656 KVHG-------------KKAYVPQSSWIQTGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 656 ~v~g-------------~iayv~Q~pwi~~gTIreNIlfG~--~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.++| +++||||+|++|+|||||||.+|. ..++++.+++++.++++++++.+|+|++|.|||+|.+
T Consensus 532 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~ 611 (708)
T TIGR01193 532 LLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSS 611 (708)
T ss_pred EECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCC
Confidence 9988 489999999999999999999983 4788999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEe
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~ 800 (1159)
|||||||||+||||++++|+|+|||||||+||+++++++.+. +.. ++++|+|+||||++.++.||+|++|++|++++.
T Consensus 612 LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~-L~~-~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~ 689 (708)
T TIGR01193 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNN-LLN-LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQ 689 (708)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHH-HHH-hcCCEEEEEecchHHHHcCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999888665 555 478999999999999999999999999999999
Q ss_pred cChHHHHhhcchHHHHHHH
Q 001091 801 GKYEDLIADQNSELVRQMK 819 (1159)
Q Consensus 801 Gt~~eL~~~~~~~~~~l~~ 819 (1159)
|+|+|+++ .++.|.++++
T Consensus 690 G~~~~L~~-~~~~y~~l~~ 707 (708)
T TIGR01193 690 GSHDELLD-RNGFYASLIH 707 (708)
T ss_pred CCHHHHHh-cCCcHHHHhh
Confidence 99999998 7788888763
No 18
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.4e-70 Score=680.77 Aligned_cols=542 Identities=18% Similarity=0.219 Sum_probs=426.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1159)
Q Consensus 266 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 345 (1159)
++.+++.+++.++...+..++..+...+.|++++.+++.+.+++. .. . ...++.++++..++..+......+...++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 92 (582)
T PRK11176 16 LWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD-RS-V-LKWMPLVVIGLMILRGITSFISSYCISWV 92 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-hh-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777778777788888888888899999999987654332 11 1 11122222233333444443433445667
Q ss_pred HHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhhhHHHHHH
Q 001091 346 GIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1159)
Q Consensus 346 ~~riR~~L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~ 421 (1159)
+.++...+...+|+|.++++.. .++.|++++++++|++++.+.+. .+..++..++.+++.+++++.. +++.+++.
T Consensus 93 ~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~l~l~~ 171 (582)
T PRK11176 93 SGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYY-SWQLSLIL 171 (582)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 7888888889999999988753 34899999999999999988653 4455566666666666555543 32555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1159)
Q Consensus 422 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~ 501 (1159)
++++++...+.....++.++..++.++..++..+...|.++|+++||.+++|+.+.++.++.-++-.+...+........
T Consensus 172 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (582)
T PRK11176 172 IVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSIS 251 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666677888888888889999999999999999999999999999888887765433333222222222211
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 001091 502 AFLFWAS--PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI 579 (1159)
Q Consensus 502 ~~~~~~~--~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~ 579 (1159)
....... -..+.++.++.+.+..+.+++|.+.+++.++..+..|+..+...+..+.+++.+++|+.++++.+++.+..
T Consensus 252 ~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~ 331 (582)
T PRK11176 252 DPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG 331 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC
Confidence 1111111 12233455677777788999999999999999999999999999999999999999999999866532111
Q ss_pred CCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEEC
Q 001091 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1159)
Q Consensus 580 ~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~ 658 (1159)
... ..+....|+++|++|+|+++ +.++|+| |++|++||+++|+|++|||||||+++|+|+++|.+|+| .++
T Consensus 332 ~~~-~~~~~~~i~~~~vsf~y~~~------~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I-~i~ 403 (582)
T PRK11176 332 KRV-IERAKGDIEFRNVTFTYPGK------EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI-LLD 403 (582)
T ss_pred CcC-CCCCCCeEEEEEEEEecCCC------CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceE-EEC
Confidence 111 11123469999999999754 3679999 99999999999999999999999999999999999999 888
Q ss_pred C-------------EEEEEecCCCCCCCcHHHHHhcCCC--CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCH
Q 001091 659 G-------------KKAYVPQSSWIQTGTIRENILFGKD--MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1159)
Q Consensus 659 g-------------~iayv~Q~pwi~~gTIreNIlfG~~--~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSG 723 (1159)
| .++||||+|++|+|||||||++|++ +++++++++++.|+++++++.+|+|++|.+||+|.+|||
T Consensus 404 g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSG 483 (582)
T PRK11176 404 GHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSG 483 (582)
T ss_pred CEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCH
Confidence 7 4899999999999999999999863 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecCh
Q 001091 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1159)
Q Consensus 724 GQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~ 803 (1159)
||||||+||||+|++|+|+||||||||||+++++.+++ .+..+.+++|+|+||||++.++.||+|++|++|+|+|.|+|
T Consensus 484 GqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~-~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~ 562 (582)
T PRK11176 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQA-ALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTH 562 (582)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHH-HHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999998765 46666678999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHh
Q 001091 804 EDLIADQNSELVRQMKAH 821 (1159)
Q Consensus 804 ~eL~~~~~~~~~~l~~~~ 821 (1159)
+++++ .++.|.++...+
T Consensus 563 ~~l~~-~~~~y~~l~~~~ 579 (582)
T PRK11176 563 AELLA-QNGVYAQLHKMQ 579 (582)
T ss_pred HHHHh-CCChHHHHHHHH
Confidence 99999 778899987643
No 19
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=7.4e-70 Score=675.03 Aligned_cols=541 Identities=21% Similarity=0.244 Sum_probs=417.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1159)
Q Consensus 266 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 345 (1159)
+..+++.+++.++...++.++..++..+.|+++..++|.+....+ ........+++++++..++..+......+...+.
T Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (592)
T PRK10790 14 LLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGN-LPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRA 92 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556677888888888999999999999999999997643222 1221112222333344444455544445556677
Q ss_pred HHHHHHHHHHHHHHHHhcccC---CCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHhhhHHHHHH
Q 001091 346 GIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFLYI-HRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1159)
Q Consensus 346 ~~riR~~L~~~iy~K~L~ls~---~~~~~G~i~nlms~D~~~i~~~~~~~-~~~w~~pl~i~ia~~lL~~~lg~~~~l~~ 421 (1159)
+.++...+...+|+|.++.+. ..++.|+++|++++|++++.+++... ..+....+.+++++.+++ .++|+.+++.
T Consensus 93 ~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~li~ 171 (592)
T PRK10790 93 AVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMF-SLDWRMALVA 171 (592)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 888888888999999998865 33489999999999999999876532 333333333333333333 2332444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001091 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA- 500 (1159)
Q Consensus 422 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~- 500 (1159)
++++++.+.+.....++.++..++..+..++..+...|.++|+++||.|+.|+.+.+++.+..++..+...+.....+.
T Consensus 172 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (592)
T PRK10790 172 IMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFL 251 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455566667777777788888889999999999999999999999988887654333322111111111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 001091 501 ---IAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK 577 (1159)
Q Consensus 501 ---~~~~~~~~~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~ 577 (1159)
..........++ ++..+.+ ...+.++.|.+++++.++..+..|+..++..+..+.+++.+.+||.++++.+++++
T Consensus 252 ~~~~~~~~~~~~~~~-~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 329 (592)
T PRK10790 252 LRPLLSLFSALILCG-LLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQY 329 (592)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC
Confidence 111111111111 1122223 45778999999999999999999999999999999999999999999998655221
Q ss_pred CCCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEE
Q 001091 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1159)
Q Consensus 578 ~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~ 656 (1159)
..... ....+.|+++|++|+|+++ .++|+| |+++++||+++|+|++|||||||+++|+|+++|.+|+| .
T Consensus 330 ~~~~~--~~~~~~i~~~~v~f~y~~~-------~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I-~ 399 (592)
T PRK10790 330 GNDDR--PLQSGRIDIDNVSFAYRDD-------NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI-R 399 (592)
T ss_pred CCCcc--CCCCCeEEEEEEEEEeCCC-------CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE-E
Confidence 11111 1123469999999999743 469999 99999999999999999999999999999999999999 8
Q ss_pred ECC-------------EEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCH
Q 001091 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1159)
Q Consensus 657 v~g-------------~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSG 723 (1159)
++| +++||||+|++|+|||||||.+|++.++++.+++++.++++++++.+|+|++|.|||+|.+|||
T Consensus 400 idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSG 479 (592)
T PRK10790 400 LDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSV 479 (592)
T ss_pred ECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence 887 3899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecCh
Q 001091 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1159)
Q Consensus 724 GQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~ 803 (1159)
||||||+||||+|+||+|+|||||||+||++++++|. +.++...++||+|+||||++.++.||+|++|++|+|++.|+|
T Consensus 480 GqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~-~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~ 558 (592)
T PRK10790 480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQ-QALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTH 558 (592)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999998875 457777789999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHhh
Q 001091 804 EDLIADQNSELVRQMKAHR 822 (1159)
Q Consensus 804 ~eL~~~~~~~~~~l~~~~~ 822 (1159)
+||++ .++.|.++.+.+.
T Consensus 559 ~~L~~-~~~~y~~l~~~~~ 576 (592)
T PRK10790 559 QQLLA-AQGRYWQMYQLQL 576 (592)
T ss_pred HHHHh-CCCHHHHHHHHHh
Confidence 99998 7889999887553
No 20
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=5.4e-70 Score=674.45 Aligned_cols=541 Identities=19% Similarity=0.227 Sum_probs=434.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1159)
Q Consensus 266 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 345 (1159)
++.+++.+++.++.+.++.++..++....|++++.+++....... .. . .+.+++++++..++..+......+...+.
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~-~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 81 (571)
T TIGR02203 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD-RS-V-LWWVPLVVIGLAVLRGICSFVSTYLLSWV 81 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hh-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788889999999999999999999999999986543322 11 1 22222233333444444444444456677
Q ss_pred HHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhhhHHHHHH
Q 001091 346 GIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1159)
Q Consensus 346 ~~riR~~L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~ 421 (1159)
+.++...+...+|+|.++.+.. ..+.|+++++++.|++++.+++. .+..++...+.+++++++++. ++|+.+++.
T Consensus 82 ~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~~l~~i~ 160 (571)
T TIGR02203 82 SNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLY-YSWQLTLIV 160 (571)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHH
Confidence 7888888888899999987653 23899999999999999998764 455555555556666555554 333555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1159)
Q Consensus 422 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~ 501 (1159)
++++++.+.+.....++.++..++..+..+++.+.++|.++|+++||.++.|+.+.+++++..++..+...+.....+..
T Consensus 161 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (571)
T TIGR02203 161 VVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSIS 240 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666677788888899999999999999999999999999999999999988888776555444433333222222
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 001091 502 AFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI 579 (1159)
Q Consensus 502 ~~~~~~~~--~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~ 579 (1159)
........ ..+.++.++.+.+..+.+|+|.+++++.++..+..|+..+...+..+.+++++.+|+.++++.+++.+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 320 (571)
T TIGR02203 241 SPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG 320 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 22211111 2233456777778889999999999999999999999999999999999999999999999876532211
Q ss_pred CCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEEC
Q 001091 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1159)
Q Consensus 580 ~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~ 658 (1159)
... ..+....|+++|++|+|+++ +.++|+| |+++++||+++|+|++|||||||+++|+|+++|.+|+| .++
T Consensus 321 ~~~-~~~~~~~i~~~~v~f~y~~~------~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I-~i~ 392 (571)
T TIGR02203 321 TRA-IERARGDVEFRNVTFRYPGR------DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI-LLD 392 (571)
T ss_pred CCC-CCCCCCeEEEEEEEEEcCCC------CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE-EEC
Confidence 111 11223469999999999764 3579999 99999999999999999999999999999999999999 988
Q ss_pred C-------------EEEEEecCCCCCCCcHHHHHhcCC--CCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCH
Q 001091 659 G-------------KKAYVPQSSWIQTGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1159)
Q Consensus 659 g-------------~iayv~Q~pwi~~gTIreNIlfG~--~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSG 723 (1159)
| +++||||+|++|+|||||||.+|+ +.++++.+++++.|+++++++.+|+|+||.|||+|.+|||
T Consensus 393 g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSg 472 (571)
T TIGR02203 393 GHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSG 472 (571)
T ss_pred CEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCH
Confidence 7 489999999999999999999996 4899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecCh
Q 001091 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1159)
Q Consensus 724 GQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~ 803 (1159)
||||||+||||+|++|+|+|||||||+||++++++|.+ .+....++||+|+|||+.+.++.||+|++|++|++++.|+|
T Consensus 473 GqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~-~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~ 551 (571)
T TIGR02203 473 GQRQRLAIARALLKDAPILILDEATSALDNESERLVQA-ALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTH 551 (571)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH-HHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCH
Confidence 99999999999999999999999999999999998855 46677789999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHH
Q 001091 804 EDLIADQNSELVRQMKA 820 (1159)
Q Consensus 804 ~eL~~~~~~~~~~l~~~ 820 (1159)
+++++ .++.|.++..+
T Consensus 552 ~~l~~-~~~~~~~~~~~ 567 (571)
T TIGR02203 552 NELLA-RNGLYAQLHNM 567 (571)
T ss_pred HHHHH-cCCHHHHHHHH
Confidence 99998 66788877654
No 21
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=8.7e-69 Score=661.84 Aligned_cols=531 Identities=26% Similarity=0.369 Sum_probs=414.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 273 VWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSA 352 (1159)
Q Consensus 273 ~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~riR~~ 352 (1159)
++ .+....++.++..++....|.++..+++.+..... ........+++..+ +..+......+...+++.++...
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~ 86 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLADLG-ELLELLLLLLLLAL----LGGVLRALQSYLGSRLGQKIVAD 86 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67 88888889999999999999999999988761111 11111112222222 22333333334445555777888
Q ss_pred HHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHhhhHHHHHHHHHHHHH
Q 001091 353 LTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYIHRIWL-LPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (1159)
Q Consensus 353 L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~~~~~~w~-~pl~i~ia~~lL~~~lg~~~~l~~l~~~i~~ 428 (1159)
+...+|+|.++++.. ..++|++++.+++|++.+.+.+........ .++.++..+++++ .++|..++..+++.+++
T Consensus 87 lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~~~~~~~~~ 165 (567)
T COG1132 87 LRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLF-SLSWRLALILLLILPLL 165 (567)
T ss_pred HHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHH
Confidence 888999999998743 227899999999999999998765433222 3333333333333 34434444444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-H
Q 001091 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIA-FLF-W 506 (1159)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~-~~~-~ 506 (1159)
......+.++.++...+..+..++..+.+.|.++|+++||.|+.|+...++.++..+...+...+.....+... ... .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (567)
T COG1132 166 ALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLL 245 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666888888888999999999999999999999999997766665543333332222111111111 111 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCCCCCCCC
Q 001091 507 ASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KKPITEPTSK 585 (1159)
Q Consensus 507 ~~~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~-~~~~~~~~~~ 585 (1159)
..-....++.++.+.+..+.++.|.+.+++.+...+..|+..+...+..+.++..|.+|+.++++.++. .+.... ..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~ 323 (567)
T COG1132 246 SSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--LK 323 (567)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC--CC
Confidence 122233445566677777889999999999999999999999999999999999999999999998652 221111 12
Q ss_pred CCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-----
Q 001091 586 ASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----- 659 (1159)
Q Consensus 586 ~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g----- 659 (1159)
..++.|+++|++|+|+++ +++++| |+++++||++|||||+|||||||+++|+|+++|.+|+| .+||
T Consensus 324 ~~~~~I~f~~vsf~y~~~-------~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I-~idg~dI~~ 395 (567)
T COG1132 324 DTIGSIEFENVSFSYPGK-------KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEI-LIDGIDIRD 395 (567)
T ss_pred CCCCeEEEEEEEEEcCCC-------CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE-EECCEehhh
Confidence 234569999999999853 689999 99999999999999999999999999999999999999 8887
Q ss_pred --------EEEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHH
Q 001091 660 --------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1159)
Q Consensus 660 --------~iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIa 730 (1159)
++|||||+|++|++||||||.+|+| .++|+.+++++.++++++++.+|+|++|.|||+|.+|||||||||+
T Consensus 396 i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrla 475 (567)
T COG1132 396 ISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLA 475 (567)
T ss_pred cCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHH
Confidence 4899999999999999999999998 5889999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHHHhhc
Q 001091 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810 (1159)
Q Consensus 731 LARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~ 810 (1159)
||||+++||+|++||||||+||+++++.|.+ .+..+.++||+|+|+||++++.+||+|+||++|+|+|.|+|+||++ .
T Consensus 476 iARall~~~~ILILDEaTSalD~~tE~~I~~-~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~-~ 553 (567)
T COG1132 476 IARALLRNPPILILDEATSALDTETEALIQD-ALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLA-K 553 (567)
T ss_pred HHHHHhcCCCEEEEeccccccCHHhHHHHHH-HHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHH-c
Confidence 9999999999999999999999999887754 5667778999999999999999999999999999999999999999 7
Q ss_pred chHHHHHHHHhh
Q 001091 811 NSELVRQMKAHR 822 (1159)
Q Consensus 811 ~~~~~~l~~~~~ 822 (1159)
++.|.++.+.+.
T Consensus 554 ~g~y~~l~~~~~ 565 (567)
T COG1132 554 GGLYARLYQAQG 565 (567)
T ss_pred CCHHHHHHHHhh
Confidence 999999987654
No 22
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.5e-68 Score=662.05 Aligned_cols=544 Identities=19% Similarity=0.260 Sum_probs=423.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (1159)
Q Consensus 265 l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r 344 (1159)
.++.+++.+++.+....++.++..++..+.|++++.+++.+....+ ... ...++..+++..++..+......+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (576)
T TIGR02204 8 ALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS-SGL--LNRYFAFLLVVALVLALGTAARFYLVTW 84 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667778888888889999999999999999999997432221 111 1112222222233333334444455678
Q ss_pred HHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhhhHHHHH
Q 001091 345 IGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1159)
Q Consensus 345 ~~~riR~~L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~ 420 (1159)
++.++...+...+|+|.++.+.. ..+.|++++++++|++.+.+++. .+..++...+.+++++++++..-+ +.+++
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~ 163 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSP-KLTSL 163 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHH
Confidence 88899999999999999988653 34889999999999999988764 344444444444444443332222 33333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (1159)
Q Consensus 421 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~ 500 (1159)
.++.+++.+.+...+.++.++..++.++..++..+...|.++|+++||.+++|+.+.+++++..++..+...+.......
T Consensus 164 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (576)
T TIGR02204 164 VLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRAL 243 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444456777888888888999999999999999999999999999998888877655433333222222221
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CC
Q 001091 501 IAFLFW--ASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KK 577 (1159)
Q Consensus 501 ~~~~~~--~~~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~-~~ 577 (1159)
...... .....+..+.++.+.+..+.+|+|.++++..+...+..|+..++..+..+.+++++++|+.++++.+++ +.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 323 (576)
T TIGR02204 244 LTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKA 323 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC
Confidence 111111 112233445567787888999999999999999999999999999999999999999999999986542 11
Q ss_pred CCCC-CCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEE
Q 001091 578 PITE-PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI 655 (1159)
Q Consensus 578 ~~~~-~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~ 655 (1159)
.... ....+....|+++|++|+|+++ +++++|+| |++++|||+++|+|++|||||||+++|+|+++|.+|+|
T Consensus 324 ~~~~~~~~~~~~~~i~~~~v~f~y~~~-----~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I- 397 (576)
T TIGR02204 324 PAHPKTLPVPLRGEIEFEQVNFAYPAR-----PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI- 397 (576)
T ss_pred CCCCccCCcCCCceEEEEEEEEECCCC-----CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE-
Confidence 1111 1111123469999999999854 23679999 99999999999999999999999999999999999999
Q ss_pred EECC-------------EEEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCC
Q 001091 656 KVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1159)
Q Consensus 656 ~v~g-------------~iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~L 721 (1159)
.++| .++||||+|++|+|||||||.+|.| .++++.+++++.+++.++++.+|+|++|.+||+|.+|
T Consensus 398 ~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~L 477 (576)
T TIGR02204 398 LLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTL 477 (576)
T ss_pred EECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcC
Confidence 8887 5899999999999999999999875 5788999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEec
Q 001091 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 722 SGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~G 801 (1159)
|||||||++||||+|++|+|+|||||||+||+++++.+. +.+....+++|+|+|||+++.++.+|+|++|++|++++.|
T Consensus 478 SgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~-~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g 556 (576)
T TIGR02204 478 SGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQ-QALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQG 556 (576)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHH-HHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeee
Confidence 999999999999999999999999999999999987765 4567777899999999999999999999999999999999
Q ss_pred ChHHHHhhcchHHHHHHHH
Q 001091 802 KYEDLIADQNSELVRQMKA 820 (1159)
Q Consensus 802 t~~eL~~~~~~~~~~l~~~ 820 (1159)
+|+++.+ .++.|.++.+.
T Consensus 557 ~~~~l~~-~~~~~~~l~~~ 574 (576)
T TIGR02204 557 THAELIA-KGGLYARLARL 574 (576)
T ss_pred cHHHHHH-cCChHHHHHhh
Confidence 9999998 78888887643
No 23
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2e-68 Score=658.05 Aligned_cols=538 Identities=20% Similarity=0.247 Sum_probs=409.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLS-GKHDH-SSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (1159)
Q Consensus 269 l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~-~~~~~-~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~ 346 (1159)
+.+.+++.++.+.++.++..++....|.+++.+++... .+... .... ....++++++..++..+......+...+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFN-YMLPAAGVRGAAIGRTAGRYGERLVSHDAT 88 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888899999999999999999999998642 22110 0111 111122233333444454444445566788
Q ss_pred HHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHhhhHHHHHHH
Q 001091 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1159)
Q Consensus 347 ~riR~~L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~~-~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l 422 (1159)
.++...+...+|+|.++++.. ..++|++++++++|++++.+++.. +..+....+.+++++++++. +.|..++..+
T Consensus 89 ~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~l~~~ 167 (574)
T PRK11160 89 FRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSF-FDLTLALTLG 167 (574)
T ss_pred HHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 888889999999999998763 348999999999999999997753 34444444444444444432 2223333332
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 423 FSTIFVMV-SNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1159)
Q Consensus 423 ~~~i~~~~-~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~ 501 (1159)
+++++..+ +...+.++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++++..++-.+...+.....+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (574)
T PRK11160 168 GILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLS 247 (574)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 33455666777788888888999999999999999999999999888887775443333322222222222
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 001091 502 AFLFWAS--PTLVSVITFGVCILLKTPLTSGAVLSALATFRI-LQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP 578 (1159)
Q Consensus 502 ~~~~~~~--~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~-l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~ 578 (1159)
....... ...+.++.++.+. ..+.++.|..++++.+... ...|+..++..+..+.++++|.+||.++++.+++.+.
T Consensus 248 ~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~ 326 (574)
T PRK11160 248 QALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF 326 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 1111111 1222334555555 4678899998887766544 3568888999999999999999999999987652111
Q ss_pred CCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEE
Q 001091 579 ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (1159)
Q Consensus 579 ~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v 657 (1159)
....+.....+.|+++|++|+|+++ ++++|+| |+++++||+++|+||+|||||||+++|+|+++|.+|+| .+
T Consensus 327 ~~~~~~~~~~~~i~~~~v~f~y~~~------~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I-~i 399 (574)
T PRK11160 327 PTTSTAAADQVSLTLNNVSFTYPDQ------PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI-LL 399 (574)
T ss_pred CcccCCCCCCCeEEEEEEEEECCCC------CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EE
Confidence 1111111223569999999999753 3578999 99999999999999999999999999999999999999 88
Q ss_pred CC-------------EEEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCH
Q 001091 658 HG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1159)
Q Consensus 658 ~g-------------~iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSG 723 (1159)
+| .++||||+|++|++||||||.+|++ .++++.+++++.++++++++. |+|++|.|||+|.+|||
T Consensus 400 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSg 478 (574)
T PRK11160 400 NGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSG 478 (574)
T ss_pred CCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCH
Confidence 87 3899999999999999999999975 688999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecCh
Q 001091 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1159)
Q Consensus 724 GQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~ 803 (1159)
||||||+||||++++|+|+|||||||+||+++++++.+ .+....++||+|+||||++.++.||+|++|++|++++.|+|
T Consensus 479 GqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~-~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~ 557 (574)
T PRK11160 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILE-LLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTH 557 (574)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCH
Confidence 99999999999999999999999999999999887754 57777789999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHH
Q 001091 804 EDLIADQNSELVRQMK 819 (1159)
Q Consensus 804 ~eL~~~~~~~~~~l~~ 819 (1159)
+||++ .++.|.++.+
T Consensus 558 ~~l~~-~~g~y~~l~~ 572 (574)
T PRK11160 558 QELLA-QQGRYYQLKQ 572 (574)
T ss_pred HHHHh-cCcHHHHHHh
Confidence 99999 8888988764
No 24
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=3.4e-68 Score=659.28 Aligned_cols=535 Identities=19% Similarity=0.256 Sum_probs=416.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (1159)
Q Consensus 268 ~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~ 347 (1159)
.+++.+++.+....++.++..++..+.|+++..++|.+.++.. . .. ++..+++..++..+......+...++..
T Consensus 12 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~--~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (588)
T PRK13657 12 QYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKGD--I---FP-LLAAWAGFGLFNIIAGVLVARHADRLAH 85 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--H---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888999999999999999999998764321 1 11 1111111112222222223344567788
Q ss_pred HHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHH
Q 001091 348 RVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (1159)
Q Consensus 348 riR~~L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l~ 423 (1159)
++|..+...+|+|.++++.. ..+.|+++++++.|++.+.+... .+.......+..++.+++++. ++++.+++.++
T Consensus 86 ~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~l~ 164 (588)
T PRK13657 86 RRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALF-MNWRLSLVLVV 164 (588)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 88888899999999998753 34899999999999999876543 233333332222233222222 33244444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 001091 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLR----EIERDSLKKYLYTCS 499 (1159)
Q Consensus 424 ~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R----~~E~~~l~~~~~~~~ 499 (1159)
++++...+...+.++.++.+++.++..++..+...|.++|+++||.|+.|+.+.+++.+.- +.+.+..+.......
T Consensus 165 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (588)
T PRK13657 165 LGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASV 244 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556677778888888889999999999999999999999999999998777766543 333332222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-
Q 001091 500 AIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP- 578 (1159)
Q Consensus 500 ~~~~~~~~~~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~- 578 (1159)
...+ ......+.+++++.+.+..+.+|+|.+++++.++..+..|+..+...+..+.+++.+.+|+.++++.+++.+.
T Consensus 245 ~~~~--~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ 322 (588)
T PRK13657 245 LNRA--ASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP 322 (588)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC
Confidence 2211 1112234456678888888999999999999999999999999999999999999999999999986542111
Q ss_pred CCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEE
Q 001091 579 ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (1159)
Q Consensus 579 ~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v 657 (1159)
....+....++.|+++|++|+|+++ +++|+| |++++|||+++|+|++|||||||+++|+|+++|.+|+| .+
T Consensus 323 ~~~~~~~~~~~~I~~~~vsf~y~~~-------~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I-~i 394 (588)
T PRK13657 323 PGAIDLGRVKGAVEFDDVSFSYDNS-------RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI-LI 394 (588)
T ss_pred CCCCCcCCCCCeEEEEEEEEEeCCC-------CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE-EE
Confidence 1111111123469999999999743 468999 99999999999999999999999999999999999999 88
Q ss_pred CC-------------EEEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCH
Q 001091 658 HG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1159)
Q Consensus 658 ~g-------------~iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSG 723 (1159)
+| .++||||+|++|+|||||||++|+| .++++.+++++.|+++++++.+|+|++|.+||+|.+|||
T Consensus 395 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSg 474 (588)
T PRK13657 395 DGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSG 474 (588)
T ss_pred CCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCH
Confidence 87 5899999999999999999999974 678889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecCh
Q 001091 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1159)
Q Consensus 724 GQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~ 803 (1159)
||||||+||||++++|+|+|||||||+||+++++.+.+ .+....++||+|+||||++.++.||+|++|+||++++.|+|
T Consensus 475 Gq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~-~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~ 553 (588)
T PRK13657 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKVKA-ALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSF 553 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999998865 46666679999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHh
Q 001091 804 EDLIADQNSELVRQMKAH 821 (1159)
Q Consensus 804 ~eL~~~~~~~~~~l~~~~ 821 (1159)
+|+++ .++.|.+++..+
T Consensus 554 ~~l~~-~~~~y~~l~~~~ 570 (588)
T PRK13657 554 DELVA-RGGRFAALLRAQ 570 (588)
T ss_pred HHHHH-CCChHHHHHHHh
Confidence 99998 778899988654
No 25
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=3e-68 Score=652.41 Aligned_cols=501 Identities=17% Similarity=0.202 Sum_probs=382.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 267 QVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (1159)
Q Consensus 267 ~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~ 346 (1159)
+.+++.+++.++...++.++..++..+.|++++.+++.+...+. ... .+....++++..++..+......+...+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (529)
T TIGR02868 5 LPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP--VLY-LSVAAVAVRAFGIGRAVFRYLERLVGHDAA 81 (529)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777778888888999999999999999999987653221 111 111111121222333443333334456678
Q ss_pred HHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHhhhHHHHHHH
Q 001091 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1159)
Q Consensus 347 ~riR~~L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~~-~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l 422 (1159)
.++...+...+|+|.++++.. ..++|+++|++++|++++.+.+.. +..+....+.+++++++++. +.|..+++.+
T Consensus 82 ~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~l~~l 160 (529)
T TIGR02868 82 LRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIAL-LSVPAALVLA 160 (529)
T ss_pred HHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHH
Confidence 888888889999999998764 238999999999999999987653 33444444444444444433 2223444433
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 423 FSTIFVMVSNTPLA-NRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1159)
Q Consensus 423 ~~~i~~~~~~~~~~-~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~ 501 (1159)
+.++++.++...+. +..++..++..+..++..+...|.++|+++||.|++|+.+.+++++..++..+...+.....+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (529)
T TIGR02868 161 AGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLG 240 (529)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333332333 33455566777888999999999999999999999999999998886555444444333333322
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-CC
Q 001091 502 AFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQK-KP 578 (1159)
Q Consensus 502 ~~~~~~~~--~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~-~~ 578 (1159)
........ ..+.++.++.+.+.++.++.+.+.+++.+...+..|+..++..+..+.+++++.+|+.++++.+++. +.
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 320 (529)
T TIGR02868 241 AAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEG 320 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCC
Confidence 22222221 2233445677777888999999999999999999999999999999999999999999999876521 11
Q ss_pred CCC--CCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEE
Q 001091 579 ITE--PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI 655 (1159)
Q Consensus 579 ~~~--~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~ 655 (1159)
... .+..+....|+++|++|+|+++ +++|+| |++++|||++|||||+|||||||+++|+|+++|++|+|
T Consensus 321 ~~~~~~~~~~~~~~I~~~~vsf~Y~~~-------~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I- 392 (529)
T TIGR02868 321 VVPAAGALGLGKPTLELRDLSFGYPGS-------PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV- 392 (529)
T ss_pred CCCCCcccCCCCceEEEEEEEEecCCC-------CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-
Confidence 111 0011123469999999999754 469999 99999999999999999999999999999999999999
Q ss_pred EECC------------EEEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCC
Q 001091 656 KVHG------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1159)
Q Consensus 656 ~v~g------------~iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LS 722 (1159)
.++| ++|||||+|++|+|||||||.+|+| .++++++++++.|+++++++.||+|++|.|||+|.+||
T Consensus 393 ~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LS 472 (529)
T TIGR02868 393 TLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLS 472 (529)
T ss_pred EECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCC
Confidence 9998 7999999999999999999999975 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCc
Q 001091 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780 (1159)
Q Consensus 723 GGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l 780 (1159)
|||||||+||||+++||+|+||||||||||+++++.|.+. +....++||+|+||||+
T Consensus 473 GGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~-l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 473 GGERQRLALARALLADAPILLLDEPTEHLDAGTESELLED-LLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999988665 66777899999999985
No 26
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=7.1e-68 Score=667.67 Aligned_cols=542 Identities=19% Similarity=0.226 Sum_probs=430.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (1159)
Q Consensus 265 l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r 344 (1159)
.++..++.+++.+....+..++..++.++.|++++.++|.+....+ .. . ...+++++++..++..+......+...+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~-~~-~-l~~l~~~~~~~~~~~~~~~~l~~~~~~~ 205 (694)
T TIGR01846 129 WFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG-LS-T-LSVLALAMLAVAIFEPALGGLRTYLFAH 205 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hh-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777888888889999999999999999999998753322 11 1 2233344444444555555555556677
Q ss_pred HHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhhhHHHHH
Q 001091 345 IGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1159)
Q Consensus 345 ~~~riR~~L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~ 420 (1159)
++.++...+...+|+|.++++.. .+++|++++++ +|++.+.+++. .+.......+.+++.+++++.. +++.+++
T Consensus 206 ~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~l~li 283 (694)
T TIGR01846 206 LTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFY-SPTLTGV 283 (694)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 88889999999999999998754 34999999999 69999998764 3333333333333333333332 3244555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (1159)
Q Consensus 421 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~ 500 (1159)
.++++++...+...+.++.++..++.++..+++.+.+.|.++|+++||.++.|+.+.+++++..++..+...+.......
T Consensus 284 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (694)
T TIGR01846 284 VIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNI 363 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556666667777778888888899999999999999999999999999998888877654444433333322222
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 001091 501 IAFLFWAS--PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP 578 (1159)
Q Consensus 501 ~~~~~~~~--~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~ 578 (1159)
........ -..+.++++|++.+..+.+|.|.++++..+...+..|+..+...+..+.+++++++|+.++++.+++.+.
T Consensus 364 ~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 443 (694)
T TIGR01846 364 AGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRS 443 (694)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC
Confidence 22211111 1223356678888888999999999999999999999999999999999999999999999987653221
Q ss_pred CCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEE
Q 001091 579 ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (1159)
Q Consensus 579 ~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v 657 (1159)
....+....++.|+++|++|+|+++ .+++|+| |+++++||+++|+|++|||||||+++|+|+++|.+|+| .+
T Consensus 444 ~~~~~~~~~~~~i~~~~vsf~y~~~------~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I-~i 516 (694)
T TIGR01846 444 AGLAALPELRGAITFENIRFRYAPD------SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV-LV 516 (694)
T ss_pred CCCCCCCCCCCeEEEEEEEEEcCCC------CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EE
Confidence 1111111224579999999999754 3578999 99999999999999999999999999999999999999 89
Q ss_pred CC-------------EEEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCH
Q 001091 658 HG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1159)
Q Consensus 658 ~g-------------~iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSG 723 (1159)
+| .++||||+|++|++||||||.++.+ .++++..++++.++++++++.+|+|++|.+||+|.+|||
T Consensus 517 dg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSg 596 (694)
T TIGR01846 517 DGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSG 596 (694)
T ss_pred CCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCH
Confidence 87 3899999999999999999999875 778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecCh
Q 001091 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1159)
Q Consensus 724 GQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~ 803 (1159)
||||||+||||++++|+|+||||||||||+++++++.+ .+....+++|+|+||||++.++.||+|++|++|+|++.|+|
T Consensus 597 Gq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~-~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~ 675 (694)
T TIGR01846 597 GQRQRIAIARALVGNPRILIFDEATSALDYESEALIMR-NMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRH 675 (694)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHH-HHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCH
Confidence 99999999999999999999999999999999988765 46667789999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHH
Q 001091 804 EDLIADQNSELVRQMKA 820 (1159)
Q Consensus 804 ~eL~~~~~~~~~~l~~~ 820 (1159)
+|+++ .++.|.++++.
T Consensus 676 ~~l~~-~~~~y~~l~~~ 691 (694)
T TIGR01846 676 EELLA-LQGLYARLWQQ 691 (694)
T ss_pred HHHHH-cCChHHHHHHh
Confidence 99999 78899998764
No 27
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.3e-67 Score=650.67 Aligned_cols=527 Identities=21% Similarity=0.265 Sum_probs=410.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001091 284 AGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMA 363 (1159)
Q Consensus 284 ~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~riR~~L~~~iy~K~L~ 363 (1159)
.++..++..+.|++++.++|.+.+... .... .+.+++.+++..++..+......+...+.+.++...+...+|+|.++
T Consensus 4 ~~~~~~~~~~~p~~~~~iid~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 81 (569)
T PRK10789 4 LIIIAMLQLIPPKVVGIIVDGVTEQHM-TTGQ-ILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSR 81 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCc-chhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345556677889999999997754321 1111 22233334444444444444434455667888888888999999998
Q ss_pred ccCC---CCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 364 IKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQ 439 (1159)
Q Consensus 364 ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l~~~i~~~~~~~~~~~~~ 439 (1159)
++.. ..++|++++++++|++.+.+... .+..++..++..++++++++..++|..+++.++++++...+...+.++.
T Consensus 82 ~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~ 161 (569)
T PRK10789 82 QHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQL 161 (569)
T ss_pred CCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8753 34899999999999999986653 3445555555544444444334554455555555555555666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q 001091 440 ERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWAS--PTLVSVITF 517 (1159)
Q Consensus 440 ~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~--~~lv~~~~f 517 (1159)
++..++.++..++..+.+.|.++|+++||.+++|+.+.++..+..++..+...+.....+......... ...+.++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (569)
T PRK10789 162 HERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGG 241 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888999999999999999999999887776643322222222222222111111111 122334556
Q ss_pred HHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEeeeE
Q 001091 518 GVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGE 597 (1159)
Q Consensus 518 ~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~~~~~s 597 (1159)
|.+.+.++.+|.|.+++++.+...+..|+..++..+..+.+++++.+||.++++.+++.+.... +....++.|+++|++
T Consensus 242 g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~-~~~~~~~~I~~~~v~ 320 (569)
T PRK10789 242 GSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSE-PVPEGRGELDVNIRQ 320 (569)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC-CCCCCCCcEEEEEEE
Confidence 7788888999999999999999999999999999999999999999999999987542111111 111123469999999
Q ss_pred EEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-------------EEEE
Q 001091 598 YAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAY 663 (1159)
Q Consensus 598 f~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------------~iay 663 (1159)
|+|+.. +.++++| |++++||++++|+||+|||||||+++|+|+++|.+|+| .++| .++|
T Consensus 321 ~~y~~~------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i-~~~g~~~~~~~~~~~~~~i~~ 393 (569)
T PRK10789 321 FTYPQT------DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDI-RFHDIPLTKLQLDSWRSRLAV 393 (569)
T ss_pred EECCCC------CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE-EECCEEHhhCCHHHHHhheEE
Confidence 999753 3578999 99999999999999999999999999999999999999 8876 4899
Q ss_pred EecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEE
Q 001091 664 VPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVY 742 (1159)
Q Consensus 664 v~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~ 742 (1159)
|+|+|++|++||||||.+|.+ .++++++++++.+++++++..+|+|++|.+||+|.+|||||||||+||||++++|+|+
T Consensus 394 v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~il 473 (569)
T PRK10789 394 VSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEIL 473 (569)
T ss_pred EccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999964 7889999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHHHhhcchHHHHHHHHhh
Q 001091 743 IFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHR 822 (1159)
Q Consensus 743 LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~~l~~~~~ 822 (1159)
|||||||+||+++++++.+ .++.+.+++|+|+||||++.++.||+|++|++|+|++.|+|+|+++ .++.|.++.+.+.
T Consensus 474 llDEpts~LD~~~~~~i~~-~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~-~~~~y~~l~~~~~ 551 (569)
T PRK10789 474 ILDDALSAVDGRTEHQILH-NLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ-QSGWYRDMYRYQQ 551 (569)
T ss_pred EEECccccCCHHHHHHHHH-HHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHH-cCChHHHHHHHhh
Confidence 9999999999999998866 4666678999999999999999999999999999999999999998 7788998876653
No 28
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-67 Score=608.62 Aligned_cols=524 Identities=22% Similarity=0.313 Sum_probs=424.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 279 LNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIY 358 (1159)
Q Consensus 279 ~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~riR~~L~~~iy 358 (1159)
...++.++..+....+-.++-..++.+-.++. ....+.++++++++.+++++....-....++.+.++|..++..++
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~---~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l 80 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQL---FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVL 80 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777765543331 111334555566666667766655556678899999999999999
Q ss_pred HHHhcccCC---CCChHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHH
Q 001091 359 KRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YI---HRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVS 431 (1159)
Q Consensus 359 ~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~---~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l~~~i~~~~~ 431 (1159)
+|..+++.. ..++|++.++++.-+|.+..++. |+ ...-..|+-++++++.+.+ .++++-++.++++.++
T Consensus 81 ~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w----~aalIllit~PlIPlf 156 (559)
T COG4988 81 DKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNW----AAALILLITAPLIPLF 156 (559)
T ss_pred HHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHH
Confidence 999998753 23899999999999999988764 22 2333455555555555443 4455555555555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 432 NTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKL----LRLREIERDSLKKYLYTCSAIAFLFWA 507 (1159)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i----~~~R~~E~~~l~~~~~~~~~~~~~~~~ 507 (1159)
...+++..++..++.++....-....-+.|+|+.++|.|+..+...++| ++.|+.-++.+|-.....++.-++...
T Consensus 157 Milvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~l 236 (559)
T COG4988 157 MILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYL 236 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888888888888888889999999999999999866555555 568999999888777666665555444
Q ss_pred HHHHHHHHHHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-CCCCC-CCC
Q 001091 508 SPTLVSVITFGVCILLK-TPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQK-KPITE-PTS 584 (1159)
Q Consensus 508 ~~~lv~~~~f~~~~~~~-~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~-~~~~~-~~~ 584 (1159)
+..+ ++.+...-+.+ ++++....+.++.+---+-.|++.+...+..-.++..+.+.+..|++.|+.. +.... ...
T Consensus 237 siAl--vAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~ 314 (559)
T COG4988 237 SIAL--VAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVA 314 (559)
T ss_pred HHHH--HHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccc
Confidence 4333 22344444556 6999999999999999999999999999999999999999999999988732 22111 111
Q ss_pred CCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----
Q 001091 585 KASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---- 659 (1159)
Q Consensus 585 ~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---- 659 (1159)
......++.+|++|.|++. ++.++| |+++++|+++||||+||||||||+++|+|+++|++|+| .++|
T Consensus 315 ~~~~~ei~~~~l~~~y~~g-------~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I-~vng~~l~ 386 (559)
T COG4988 315 NEPPIEISLENLSFRYPDG-------KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEI-RVNGIDLR 386 (559)
T ss_pred cCCCceeeecceEEecCCC-------CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceE-EECCcccc
Confidence 1123345556999999865 489999 99999999999999999999999999999999999999 9987
Q ss_pred ---------EEEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHH
Q 001091 660 ---------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1159)
Q Consensus 660 ---------~iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRI 729 (1159)
+++||||+|.||+|||||||++|++ -+++...++++..+|.+.++. |+|.||+|||+|.+|||||+||+
T Consensus 387 ~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRl 465 (559)
T COG4988 387 DLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRL 465 (559)
T ss_pred ccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHH
Confidence 4999999999999999999999998 668999999999999999999 99999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHHHhh
Q 001091 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIAD 809 (1159)
Q Consensus 730 aLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~ 809 (1159)
+||||+++++++||||||||+||+++|+.| .+.+..+.++||||+||||++.+..+|+|+|||+|+++|+|+|+||.+
T Consensus 466 aLARAll~~~~l~llDEpTA~LD~etE~~i-~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~- 543 (559)
T COG4988 466 ALARALLSPASLLLLDEPTAHLDAETEQII-LQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSE- 543 (559)
T ss_pred HHHHHhcCCCCEEEecCCccCCCHhHHHHH-HHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhh-
Confidence 999999999999999999999999998755 567888889999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhh
Q 001091 810 QNSELVRQMKAHR 822 (1159)
Q Consensus 810 ~~~~~~~l~~~~~ 822 (1159)
+++.|+++++.+.
T Consensus 544 ~~~~y~~l~~~q~ 556 (559)
T COG4988 544 KQGLYANLLKQQE 556 (559)
T ss_pred cCcHHHHHHHHHh
Confidence 8889999987754
No 29
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.3e-67 Score=644.46 Aligned_cols=521 Identities=20% Similarity=0.228 Sum_probs=410.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 271 HAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVR 350 (1159)
Q Consensus 271 ~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~riR 350 (1159)
+.+++.++...++.++..++..+.|++++.++|.+..... .. . .+.+++++++..++..++.....+...+++.++.
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~-~~-~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (544)
T TIGR01842 2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS-VP-T-LLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLD 78 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-hh-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888889999999999999999999997643221 11 1 2333444445555556665555666778899999
Q ss_pred HHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHH
Q 001091 351 SALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLY--IHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (1159)
Q Consensus 351 ~~L~~~iy~K~L~ls~~~~~~G~i~nlms~D~~~i~~~~~~--~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l~~~i~~ 428 (1159)
..+...+|+|.++++.. ..++..+.+++|++++.+++.. +..+...++.++..++ ++..-+ +.+++.++.+++.
T Consensus 79 ~~lr~~~~~~ll~~~~~--~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~-~l~li~l~~~~l~ 154 (544)
T TIGR01842 79 GALNQPIFAASFSATLR--RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLV-CFLLHP-WIGILALGGAVVL 154 (544)
T ss_pred HHHHHHHHHHHhcCccc--CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHhh-HHHHHHHHHHHHH
Confidence 99999999999998874 3456678889999999987643 3333344443333322 222222 3333333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWAS 508 (1159)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~ 508 (1159)
+.+.....++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++++..++..+...+.....+.........
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 155 VGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566777778888999999999999999999999999999999998888765554444333322222222211111
Q ss_pred --HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCC
Q 001091 509 --PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKA 586 (1159)
Q Consensus 509 --~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~ 586 (1159)
...+.+++++.+.+..+.+|+|.+++++.++..+..|+..++..+..+.+++++.+|+.++++.+++.+.... ...
T Consensus 235 ~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~--~~~ 312 (544)
T TIGR01842 235 RIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMP--LPE 312 (544)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCC--CCC
Confidence 1223455678888889999999999999999999999999999999999999999999999987653221111 111
Q ss_pred CCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC------
Q 001091 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------ 659 (1159)
Q Consensus 587 ~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g------ 659 (1159)
.+..|+++|++|+|+++ +.++++| |+++++||+++|+||+|||||||+++|+|+++|.+|+| .++|
T Consensus 313 ~~~~i~~~~v~~~y~~~------~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i-~~~g~~i~~~ 385 (544)
T TIGR01842 313 PEGHLSVENVTIVPPGG------KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV-RLDGADLKQW 385 (544)
T ss_pred CCCeEEEEEEEEEcCCC------CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEehhhC
Confidence 23469999999999753 3578999 99999999999999999999999999999999999999 8886
Q ss_pred -------EEEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHH
Q 001091 660 -------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1159)
Q Consensus 660 -------~iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaL 731 (1159)
.++||||+|++|++||||||.++.+ .+++++.++++.++++++++.+|+|++|.+||+|.+||||||||++|
T Consensus 386 ~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~l 465 (544)
T TIGR01842 386 DRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIAL 465 (544)
T ss_pred CHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHH
Confidence 4899999999999999999986654 78899999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHHHh
Q 001091 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 732 ARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
|||++++|+++|||||||+||+++++.+.+ .+..+. +++|+|++||+++.+..||+|++|++|++++.|+|+|+++
T Consensus 466 ARall~~~~ililDEpts~LD~~~~~~i~~-~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 466 ARALYGDPKLVVLDEPNSNLDEEGEQALAN-AIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHHhcCCCEEEEeCCccccCHHHHHHHHH-HHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999999887755 566654 6899999999999999999999999999999999999875
No 30
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=7.1e-66 Score=636.18 Aligned_cols=535 Identities=17% Similarity=0.273 Sum_probs=417.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (1159)
Q Consensus 268 ~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~ 347 (1159)
.+++.+++.++...++.++..++..+.|++++.++|.+..++. .. .+ +..+++..++..+..........+++.
T Consensus 12 ~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~--~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (585)
T TIGR01192 12 SYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD--VL--PT--LALWAGFGVFNTIAYVLVAREADRLAH 85 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888889999999999999999999999997654321 11 11 111112222333333333445667888
Q ss_pred HHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHH
Q 001091 348 RVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (1159)
Q Consensus 348 riR~~L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l~ 423 (1159)
++|..+...+|+|.++++.. .+++|++++++++|++.+.+++. .+.......+.+++.+++++. +.|..++..++
T Consensus 86 ~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~li~l~ 164 (585)
T TIGR01192 86 GRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFA-MDWRLSIVLMV 164 (585)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 89999999999999998753 34899999999999999987654 333334444444444333332 23244444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 001091 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREI----ERDSLKKYLYTCS 499 (1159)
Q Consensus 424 ~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~----E~~~l~~~~~~~~ 499 (1159)
++++...+...+.++.++..++..+..++..+.+.|.++|+++||.++.|+.+.+++++..++ +.+..+.......
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (585)
T TIGR01192 165 LGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASG 244 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566667777788888888888899999999999999999999999887777664332 2222222111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-CC
Q 001091 500 AIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQK-KP 578 (1159)
Q Consensus 500 ~~~~~~~~~~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~-~~ 578 (1159)
...+.... ..+.++.+|.+.+..+.++.|.+++++.++..+..|+..++..+..+.+++.+.+|+.++++.+++. +.
T Consensus 245 ~~~~~~~~--~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~ 322 (585)
T TIGR01192 245 LNRMASTI--SMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEP 322 (585)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC
Confidence 11111111 2234456778888889999999999999999999999999999999999999999999999865421 11
Q ss_pred CCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEE
Q 001091 579 ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (1159)
Q Consensus 579 ~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v 657 (1159)
....+.....+.|+++|++|+|+++ .++++| |+++++||+++|+||+|||||||+++|+|+++|.+|+| .+
T Consensus 323 ~~~~~~~~~~~~i~~~~v~~~y~~~-------~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i-~~ 394 (585)
T TIGR01192 323 ADAPELPNVKGAVEFRHITFEFANS-------SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQI-LI 394 (585)
T ss_pred ccCCCCCCCCCeEEEEEEEEECCCC-------CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEE-EE
Confidence 1111111123469999999999753 457999 99999999999999999999999999999999999999 88
Q ss_pred CC-------------EEEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCH
Q 001091 658 HG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1159)
Q Consensus 658 ~g-------------~iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSG 723 (1159)
+| .++||||+|++|++||||||.+|.+ .++++.+++++.+++++++..+|+|++|.+||+|.+|||
T Consensus 395 ~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSg 474 (585)
T TIGR01192 395 DGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSG 474 (585)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCH
Confidence 76 4899999999999999999999965 577888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecCh
Q 001091 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1159)
Q Consensus 724 GQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~ 803 (1159)
||||||+||||++++|+++|||||||+||+++++.+. +.+....+++|+|+||||++.++.||+|++|++|++++.|+|
T Consensus 475 Gq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~-~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~ 553 (585)
T TIGR01192 475 GERQRLAIARAILKNAPILVLDEATSALDVETEARVK-NAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSF 553 (585)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHH-HHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999988774 556777789999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHh
Q 001091 804 EDLIADQNSELVRQMKAH 821 (1159)
Q Consensus 804 ~eL~~~~~~~~~~l~~~~ 821 (1159)
+|+++ .++.|.++...+
T Consensus 554 ~~l~~-~~~~y~~l~~~~ 570 (585)
T TIGR01192 554 QELIQ-KDGRFYKLLRRS 570 (585)
T ss_pred HHHHH-CCChHHHHHHhC
Confidence 99998 788899887654
No 31
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.7e-66 Score=688.37 Aligned_cols=539 Identities=18% Similarity=0.188 Sum_probs=395.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 270 IHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRV 349 (1159)
Q Consensus 270 ~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~ri 349 (1159)
++.+++.+++++++.++..++..+.|+++..+++.+.+... .... +..+++.+++..++..++.....+...+++.++
T Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~-~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~ 897 (1466)
T PTZ00265 820 IFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFAN-LEAN-SNKYSLYILVIAIAMFISETLKNYYNNVIGEKV 897 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556668888888889999999999999999985433211 1111 212222222333333333333334456677777
Q ss_pred HHHHHHHHHHHHhcccCC-----CCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHH
Q 001091 350 RSALTVLIYKRSMAIKFA-----GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (1159)
Q Consensus 350 R~~L~~~iy~K~L~ls~~-----~~~~G~i~nlms~D~~~i~~~~~~-~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l~ 423 (1159)
...+...+|+|.++++.. ..++|++++++++|++.+.+++.. +..+...++.+++++++++. +.|..+++.+
T Consensus 898 ~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~-~~~~l~l~~~- 975 (1466)
T PTZ00265 898 EKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFY-FCPIVAAVLT- 975 (1466)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-
Confidence 778888889999888642 247999999999999999986542 33333344444444443332 2322222221
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHH-----------------HHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHH
Q 001091 424 STIFVMVSNTPLANRQERF-HSMI-----------------MEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLRE 485 (1159)
Q Consensus 424 ~~i~~~~~~~~~~~~~~~~-~~~~-----------------~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~ 485 (1159)
+++.++...+.++.+.. .++. .+..++....++|.++||++||.|+.|+.+.+++++.-+
T Consensus 976 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~ 1053 (1466)
T PTZ00265 976 --GTYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAID 1053 (1466)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHH
Confidence 22222222223322211 1111 112334467899999999999999999999988887544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 486 IERDSLKKYLYTCSAIAFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSL 563 (1159)
Q Consensus 486 ~E~~~l~~~~~~~~~~~~~~~~~~--~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~ 563 (1159)
...+..++.....+....+..+.. ..+.++++|.+.+..+.++.+.+++++.++.....++..+...++.+.+++++.
T Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~ 1133 (1466)
T PTZ00265 1054 YSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSF 1133 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333322222222211111111 234456788888889999999999988776666677888999999999999999
Q ss_pred HHHHHHhcccCCCC--CCCCCC---CCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChh
Q 001091 564 YRIQEFIKEDNQKK--PITEPT---SKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKS 637 (1159)
Q Consensus 564 ~RI~~fL~~~e~~~--~~~~~~---~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKS 637 (1159)
+|+.++++.++..+ .....+ ....++.|+|+|++|+|+++ ++.++|+| ||+|++|+++|||||+|||||
T Consensus 1134 ~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~-----~~~~vL~~lsl~i~~G~~vAIVG~SGsGKS 1208 (1466)
T PTZ00265 1134 EKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISR-----PNVPIYKDLTFSCDSKKTTAIVGETGSGKS 1208 (1466)
T ss_pred HHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCC-----CCCccccCeeEEEcCCCEEEEECCCCCCHH
Confidence 99999998654111 101110 11223579999999999865 34579999 999999999999999999999
Q ss_pred HHHHHHhCCccC------------------------------------------------------CCCcEEEECC----
Q 001091 638 SLLSSILGEIPR------------------------------------------------------ISGAAIKVHG---- 659 (1159)
Q Consensus 638 TLL~~llGe~~~------------------------------------------------------~~G~i~~v~g---- 659 (1159)
||+++|+|+|+| .+|+| .++|
T Consensus 1209 Tl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I-~idG~di~ 1287 (1466)
T PTZ00265 1209 TVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKI-LLDGVDIC 1287 (1466)
T ss_pred HHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeE-EECCEEHH
Confidence 999999999998 59999 9987
Q ss_pred ---------EEEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHH
Q 001091 660 ---------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1159)
Q Consensus 660 ---------~iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRI 729 (1159)
.||||||+|.||+|||||||.+|+| .+++..+++++.++++++++.||+|++|.|||+|.+|||||||||
T Consensus 1288 ~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRI 1367 (1466)
T PTZ00265 1288 DYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRI 1367 (1466)
T ss_pred hCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHH
Confidence 4899999999999999999999975 688899999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccccCEEEEEeC----CeEE-EecC
Q 001091 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKD----GKIE-QSGK 802 (1159)
Q Consensus 730 aLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~aD~Iivl~~----G~I~-e~Gt 802 (1159)
|||||+++||+|+||||||||||+++++.| ++.+..+. ++||+|+||||++.++.||+|+||++ |+++ |+|+
T Consensus 1368 aIARALlr~p~ILLLDEaTSaLD~~sE~~I-~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gt 1446 (1466)
T PTZ00265 1368 AIARALLREPKILLLDEATSSLDSNSEKLI-EKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGT 1446 (1466)
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHH-HHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecC
Confidence 999999999999999999999999998876 55677763 69999999999999999999999999 9954 8999
Q ss_pred hHHHHhhcchHHHHHHHHh
Q 001091 803 YEDLIADQNSELVRQMKAH 821 (1159)
Q Consensus 803 ~~eL~~~~~~~~~~l~~~~ 821 (1159)
|+||+++.++.|.++++.+
T Consensus 1447 h~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1447 HEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred HHHHHhcCCChHHHHHhhc
Confidence 9999973378899887643
No 32
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1e-65 Score=629.94 Aligned_cols=506 Identities=21% Similarity=0.255 Sum_probs=388.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLS-GKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSA 352 (1159)
Q Consensus 274 ~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~-~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~riR~~ 352 (1159)
|+.++..+++.++..++..+.|++++.++|.+. ++.. ... ...+++.+++..++..+......+...+++.++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP--LAE-LLPALGALALAVLLRALLGWLGERAAARAAAAVKSQ 78 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888889999999999999999999873 3221 111 222333333444445555555555667788888888
Q ss_pred HHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHH
Q 001091 353 LTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (1159)
Q Consensus 353 L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l~~~i~~ 428 (1159)
+...+|+|.++++.. ..++|+++|++++|++++.+++. .+..+....+..++++++++. ++|..+++.++.+++.
T Consensus 79 lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~~~~l~~~~l~ 157 (529)
T TIGR02857 79 LRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFP-ADWISGLILLLTAPLI 157 (529)
T ss_pred HHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHH
Confidence 888999999988653 34899999999999999998764 355555555444444444332 2223333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWAS 508 (1159)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~ 508 (1159)
..+...+.++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++++..++..+...+...............
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02857 158 PIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELF 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567777777888888999999999999999999999999999888887653332222222111111111111111
Q ss_pred HHH--HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCC
Q 001091 509 PTL--VSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKA 586 (1159)
Q Consensus 509 ~~l--v~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~ 586 (1159)
..+ +.+..++.+.+..+.+|.+.+++++.+...+..|+..+...+..+.+++++++|+.++++.+++.......+ ..
T Consensus 238 ~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~-~~ 316 (529)
T TIGR02857 238 ATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAPVT-AA 316 (529)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcCCC-CC
Confidence 111 112234455556788999999999999999999999999999999999999999999997543211111111 11
Q ss_pred CCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC------
Q 001091 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------ 659 (1159)
Q Consensus 587 ~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g------ 659 (1159)
..+.|+++|++|+|++. ++++++| |++++|||+++|+||+|||||||+++|+|+++|.+|+| .++|
T Consensus 317 ~~~~i~~~~v~f~y~~~------~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I-~~~g~~i~~~ 389 (529)
T TIGR02857 317 PAPSLEFSGLSVAYPGR------RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI-AVNGVPLADA 389 (529)
T ss_pred CCCeEEEEEEEEECCCC------CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEehhhC
Confidence 12469999999999854 3578999 99999999999999999999999999999999999999 8887
Q ss_pred -------EEEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHH
Q 001091 660 -------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1159)
Q Consensus 660 -------~iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaL 731 (1159)
+++||+|+|++|++||||||.+|.+ .++++.+++++.++++++++.+|+|+||.+||+|.+||||||||++|
T Consensus 390 ~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~l 469 (529)
T TIGR02857 390 DADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLAL 469 (529)
T ss_pred CHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHH
Confidence 3899999999999999999999875 67889999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEE
Q 001091 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM 792 (1159)
Q Consensus 732 ARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl 792 (1159)
|||++++|+|+||||||||||+++++.+.+ .+..+.+++|+|+||||++.++.||+|++|
T Consensus 470 aRal~~~~~ililDE~ts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 470 ARAFLRDAPLLLLDEPTAHLDAETEALVTE-ALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHhcCCCEEEEeCcccccCHHHHHHHHH-HHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999998865 566777899999999999999999999986
No 33
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-65 Score=583.30 Aligned_cols=520 Identities=22% Similarity=0.283 Sum_probs=405.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 001091 288 TIASYIGPFLITNFVSFLSGKHDHSS--YHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIK 365 (1159)
Q Consensus 288 ~~~~~~~P~ll~~li~~~~~~~~~~~--~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~riR~~L~~~iy~K~L~ls 365 (1159)
-.+....|++++..++.+.+.+. .+ .......+.+++++.+..+++.-.-.+....+..++-......+|++.+.++
T Consensus 43 K~l~v~vp~~~~~~id~l~~~~~-~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld 121 (591)
T KOG0057|consen 43 KILNVQVPFIFKLIIDGLNDADG-NPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLD 121 (591)
T ss_pred hHhheehHHHHHHHHhhhhhccc-CcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45667789999999998863322 12 1112234444555555555554444444455666666667778888888876
Q ss_pred CC---CCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 366 FA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQER 441 (1159)
Q Consensus 366 ~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l~~~i~~~~~~~~~~~~~~~ 441 (1159)
.. ++.+|++.+.|..-...|.+++. .+..+....+++.+....++...|...++..++.+.....+...+.....+
T Consensus 122 ~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~ 201 (591)
T KOG0057|consen 122 LSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNR 201 (591)
T ss_pred HHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHH
Confidence 54 34899999999999998988775 455666677888888889999999333333344444444455667788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 001091 442 FHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR-LREIERDSLKKYLYTCSAIAFLFWAS-PTLVSVITFGV 519 (1159)
Q Consensus 442 ~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~-~R~~E~~~l~~~~~~~~~~~~~~~~~-~~lv~~~~f~~ 519 (1159)
++++++++.++..+..-|.|.|-.+||.|+-|+.-.++..+ +++.|...++....+...+...-... ..++.+...+.
T Consensus 202 fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~ 281 (591)
T KOG0057|consen 202 FRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGS 281 (591)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998888776 45666555544333322221111111 11111222222
Q ss_pred HHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEEE
Q 001091 520 CILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYA 599 (1159)
Q Consensus 520 ~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~~~~~sf~ 599 (1159)
.-...+.+|.+......+++.+|..|+..|...+..+.|+..-++-....++.+++.... ..|....++.|+|+|++|+
T Consensus 282 ~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~-~~~i~~~~~~I~F~dV~f~ 360 (591)
T KOG0057|consen 282 NGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA-ALPIELFGGSIEFDDVHFS 360 (591)
T ss_pred hhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc-cCCcccCCCcEEEEeeEEE
Confidence 224566899999999999999999999999999999999988887776665544422111 1122233456999999999
Q ss_pred eCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-------------EEEEEe
Q 001091 600 WDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVP 665 (1159)
Q Consensus 600 w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------------~iayv~ 665 (1159)
|+++ .++|++ |++||+||+|||||++||||||++++|+++++ .+|+| .++| .|||||
T Consensus 361 y~~k-------~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I-~IdG~dik~~~~~SlR~~Ig~VP 431 (591)
T KOG0057|consen 361 YGPK-------RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSI-LIDGQDIKEVSLESLRQSIGVVP 431 (591)
T ss_pred eCCC-------CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcE-EECCeeHhhhChHHhhhheeEeC
Confidence 9854 679999 99999999999999999999999999999999 99999 9998 489999
Q ss_pred cCCCCCCCcHHHHHhcCCCC-ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEE
Q 001091 666 QSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (1159)
Q Consensus 666 Q~pwi~~gTIreNIlfG~~~-d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LL 744 (1159)
||..|||+||-+||.+|++. .+++..++++..++++-+..||+|++|.+||||..|||||||||+||||+.+||+|+++
T Consensus 432 Qd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~ 511 (591)
T KOG0057|consen 432 QDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLL 511 (591)
T ss_pred CcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEe
Confidence 99999999999999999984 44555566666688999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHHHhhcchHHHHHHHH
Q 001091 745 DDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820 (1159)
Q Consensus 745 DDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~~l~~~ 820 (1159)
|||||+||++||+.|++. +++.++|||+|+|.||++++++||+|++++||++.|.|+|+||++ +++.|.++...
T Consensus 512 DEaTS~LD~~TE~~i~~~-i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~ 585 (591)
T KOG0057|consen 512 DEATSALDSETEREILDM-IMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTT 585 (591)
T ss_pred cCcccccchhhHHHHHHH-HHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhcc
Confidence 999999999999999875 666889999999999999999999999999999999999999999 88888887643
No 34
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=9.1e-65 Score=679.15 Aligned_cols=466 Identities=17% Similarity=0.205 Sum_probs=361.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhhhHHHH
Q 001091 344 RIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAF 419 (1159)
Q Consensus 344 r~~~riR~~L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg~~~~l 419 (1159)
..+.+.-..+...+|++.++.+.. ..++|+++|++++|++.+++.+. .+..+...++.++.++++++.... +.++
T Consensus 1031 ~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~-~~~~ 1109 (1522)
T TIGR00957 1031 IGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATP-IAAV 1109 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 344555555556667777776643 34899999999999999998765 344455555556555554443222 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCS 499 (1159)
Q Consensus 420 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~ 499 (1159)
+.+.++++...+.....+..+..++...+.++...+..+|.++|+++||.|++|+.|.++..+..+...+..........
T Consensus 1110 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 1189 (1522)
T TIGR00957 1110 IIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANR 1189 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333333334444444555555566667778899999999999999999999988887765544443222221211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC-
Q 001091 500 AIAFLFWASPTLVSVITFGVCILL-KTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK- 577 (1159)
Q Consensus 500 ~~~~~~~~~~~lv~~~~f~~~~~~-~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~- 577 (1159)
+..........++ ++..+.+.+. .+.+++|.+..++.+...+..|+..+...+..+.++.+|.+||.++++.+++.+
T Consensus 1190 ~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~ 1268 (1522)
T TIGR00957 1190 WLAVRLECVGNCI-VLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPW 1268 (1522)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 1111111111111 1222233333 467999999999999999999999999999999999999999999997654221
Q ss_pred --CCCCCC-CCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCc
Q 001091 578 --PITEPT-SKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGA 653 (1159)
Q Consensus 578 --~~~~~~-~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~ 653 (1159)
.....+ ..+.++.|+|+|++|+|+++ .+++|+| ||+|++||++||||++|||||||+++|+|+++|.+|+
T Consensus 1269 ~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~ 1342 (1522)
T TIGR00957 1269 QIQETAPPSGWPPRGRVEFRNYCLRYRED------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGE 1342 (1522)
T ss_pred cccCCCCCCCCCCCCcEEEEEEEEEeCCC------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCe
Confidence 111111 11234679999999999864 3579999 9999999999999999999999999999999999999
Q ss_pred EEEECC-------------EEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 654 AIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 654 i~~v~g-------------~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
| .++| +++||||+|.+|+|||||||....+++++..+++++.|+|+++++.+|+|++|+|||+|.|
T Consensus 1343 I-~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~ 1421 (1522)
T TIGR00957 1343 I-IIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGEN 1421 (1522)
T ss_pred E-EECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCc
Confidence 9 9988 4899999999999999999984447889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEe
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~ 800 (1159)
||||||||++||||++++|+|+|||||||+||++|++.| ++.++...+++|+|+||||++++..+|+|+||++|+|+|.
T Consensus 1422 LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~I-q~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~ 1500 (1522)
T TIGR00957 1422 LSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLI-QSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEF 1500 (1522)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999997655 7778888899999999999999999999999999999999
Q ss_pred cChHHHHhhcchHHHHHHHH
Q 001091 801 GKYEDLIADQNSELVRQMKA 820 (1159)
Q Consensus 801 Gt~~eL~~~~~~~~~~l~~~ 820 (1159)
|+|+||++ +++.|.+++++
T Consensus 1501 G~~~eLl~-~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1501 GAPSNLLQ-QRGIFYSMAKD 1519 (1522)
T ss_pred CCHHHHHh-CCCHHHHHHHH
Confidence 99999999 67899998765
No 35
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-66 Score=577.65 Aligned_cols=529 Identities=17% Similarity=0.273 Sum_probs=401.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 001091 278 ALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAK------TVESLTQRQWYFGANRIGIRVRS 351 (1159)
Q Consensus 278 ~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~------~~~~l~~~~~~~~~~r~~~riR~ 351 (1159)
+...++.++.-++....|.+.+.+++-+..+.. +.+...+.++...|+.. ++..+-...| -++..-...
T Consensus 218 ~~cl~ll~i~rli~~~~pi~~k~iv~~ltap~~-~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLW----i~VqQyttR 292 (790)
T KOG0056|consen 218 VFCLFLLIIGRLINVSLPILSKWIVDELTAPDT-FQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLW----IPVQQYTTR 292 (790)
T ss_pred HHHHHHHHHHHHHhhhhHHhHHHHHHhhcCcch-hhHHHHHHHHHHHHHhcCCccccchhhhheeEE----EEhhHhHHH
Confidence 344455556666777789999999998875443 33332333333333221 1222211111 111111122
Q ss_pred HHHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHH
Q 001091 352 ALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIF 427 (1159)
Q Consensus 352 ~L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l~~~i~ 427 (1159)
.+-..+|++...+|.. .|.+||+...|....+.+. +.. ...++-...+.++++++..+....+|-.+..+..+.+
T Consensus 293 ~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~l 371 (790)
T KOG0056|consen 293 EIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLL 371 (790)
T ss_pred HHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHH
Confidence 3445678888777653 4589999999987766655 332 2344445556777777766655554544544444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 428 VMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQE----FLKKLLRLREIERDSLKKYLYTCSAIAF 503 (1159)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~----f~~~i~~~R~~E~~~l~~~~~~~~~~~~ 503 (1159)
..-+...+.....++++++..+-.+--..-.+.|-|..++|.|+.|+. +.+.|.+..++|.+.+....++......
T Consensus 372 Y~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~ 451 (790)
T KOG0056|consen 372 YCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNG 451 (790)
T ss_pred HhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444455566666777777766655555666799999999999999864 4555666666776655443333322221
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCC
Q 001091 504 LFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QKKPITEP 582 (1159)
Q Consensus 504 ~~~~~~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e-~~~~~~~~ 582 (1159)
+.- -.+.....+.+|.+..+.+|.|...-+.+++..+.+|++.+......++...+-++|+.+.+++++ -.|.....
T Consensus 452 Ii~--lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~ 529 (790)
T KOG0056|consen 452 IIG--LGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAP 529 (790)
T ss_pred hhh--hHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCC
Confidence 111 112223345566667788999999999999999999999999999999999999999999998776 22322333
Q ss_pred CCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--
Q 001091 583 TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-- 659 (1159)
Q Consensus 583 ~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-- 659 (1159)
|-....+.|+|+|++|+|+++ +|+|+| ||+++||+.+|+|||+|+||||+++.+.++++..+|+| .+||
T Consensus 530 pl~~~~G~i~fsnvtF~Y~p~-------k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI-~iDgqd 601 (790)
T KOG0056|consen 530 PLKVTQGKIEFSNVTFAYDPG-------KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSI-TIDGQD 601 (790)
T ss_pred CccccCCeEEEEEeEEecCCC-------CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceE-EEcCch
Confidence 333456789999999999865 899999 99999999999999999999999999999999999999 9998
Q ss_pred -----------EEEEEecCCCCCCCcHHHHHhcCCCC-ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHH
Q 001091 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1159)
Q Consensus 660 -----------~iayv~Q~pwi~~gTIreNIlfG~~~-d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQ 727 (1159)
+||.||||..+||+||-+||.||+|- .+|...++.+|++.++-|-.+|+|++|.|||||..||||+||
T Consensus 602 Irnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQ 681 (790)
T KOG0056|consen 602 IRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQ 681 (790)
T ss_pred HHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchh
Confidence 48999999999999999999999974 445666788999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHHH
Q 001091 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLI 807 (1159)
Q Consensus 728 RIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~ 807 (1159)
|||+||++.++|.|++|||+|||||.+|++.| |.++..+.++||.|+|+||++++-+||.|+|++||+|+|.|+|+||+
T Consensus 682 RVAiARtiLK~P~iIlLDEATSALDT~tER~I-QaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl 760 (790)
T KOG0056|consen 682 RVAIARTILKAPSIILLDEATSALDTNTERAI-QAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELL 760 (790)
T ss_pred hHHHHHHHhcCCcEEEEcchhhhcCCccHHHH-HHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHH
Confidence 99999999999999999999999999999987 88999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHhhh
Q 001091 808 ADQNSELVRQMKAHRK 823 (1159)
Q Consensus 808 ~~~~~~~~~l~~~~~~ 823 (1159)
+..+|.|+++.+.++.
T Consensus 761 ~rdgG~Ya~MWq~qqa 776 (790)
T KOG0056|consen 761 KRDGGAYADMWQAQQA 776 (790)
T ss_pred hccCCcHHHHHHHHHh
Confidence 9558999999976543
No 36
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.3e-64 Score=671.44 Aligned_cols=469 Identities=17% Similarity=0.180 Sum_probs=345.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhhhHHHH
Q 001091 344 RIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAF 419 (1159)
Q Consensus 344 r~~~riR~~L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg~~~~l 419 (1159)
+.+.+.-..+...+|++.++.+.. .+++|+++|++++|++.+++... .+..+....++++.+++++..... +..+
T Consensus 979 ~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~-~~~~ 1057 (1622)
T PLN03130 979 MSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVST-ISLW 1057 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 445555555666777787777643 44899999999999999988664 344444445555444433322111 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCS 499 (1159)
Q Consensus 420 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~ 499 (1159)
+.+.++++++.+..+..+..++.++.....+....+..+|.++|+++||.|++|+.|.++..+..+...+..........
T Consensus 1058 ~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 1137 (1622)
T PLN03130 1058 AIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNR 1137 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222223333333444444455566677889999999999999999999888776655444332221111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 001091 500 AIAFLFWASPTLVSVITFGVCILL-KTPLT-----SGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKED 573 (1159)
Q Consensus 500 ~~~~~~~~~~~lv~~~~f~~~~~~-~~~Lt-----~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~ 573 (1159)
+..........++ ++..+.+.+. ++..+ ++.+-..+++...+..++..+......+.++.+|.+|+.++++.+
T Consensus 1138 wl~~~l~~~~~~~-i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~ 1216 (1622)
T PLN03130 1138 WLAIRLETLGGLM-IWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLP 1216 (1622)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1111111111111 1111222222 22211 334444455556667777788888888899999999999999866
Q ss_pred CCCCC-CC---CCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 574 NQKKP-IT---EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 574 e~~~~-~~---~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
++.+. .+ ..+..+.++.|+|+|++|+|+++ .+++|+| ||+|++||++||||++|||||||+++|+|+++
T Consensus 1217 ~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~------~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~ 1290 (1622)
T PLN03130 1217 SEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE------LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE 1290 (1622)
T ss_pred CcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC------CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 52211 11 11111234679999999999754 3579999 99999999999999999999999999999999
Q ss_pred CCCCcEEEECC-------------EEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCcccc
Q 001091 649 RISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG 715 (1159)
Q Consensus 649 ~~~G~i~~v~g-------------~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IG 715 (1159)
|.+|+| .++| +++||||+|.+|+|||||||.+++++++++.+++++.|+++++++.+|+|++|+||
T Consensus 1291 p~~G~I-~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vg 1369 (1622)
T PLN03130 1291 LERGRI-LIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVS 1369 (1622)
T ss_pred CCCceE-EECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCcccc
Confidence 999999 9988 48999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCC
Q 001091 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDG 795 (1159)
Q Consensus 716 e~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G 795 (1159)
|+|.||||||||||+||||++++|+|+|||||||+||++|++.| ++.|+...+++|+|+||||++++.+||+|+||++|
T Consensus 1370 e~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~I-q~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G 1448 (1622)
T PLN03130 1370 EAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALI-QKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAG 1448 (1622)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH-HHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999998765 77888888999999999999999999999999999
Q ss_pred eEEEecChHHHHhhcchHHHHHHHHhh
Q 001091 796 KIEQSGKYEDLIADQNSELVRQMKAHR 822 (1159)
Q Consensus 796 ~I~e~Gt~~eL~~~~~~~~~~l~~~~~ 822 (1159)
+|+|.|+|+||+++.++.|.++++...
T Consensus 1449 ~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1449 RVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred EEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 999999999999844689999987644
No 37
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.1e-63 Score=663.59 Aligned_cols=468 Identities=16% Similarity=0.163 Sum_probs=345.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHhhhHHHH
Q 001091 344 RIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAF 419 (1159)
Q Consensus 344 r~~~riR~~L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~~-~~~~w~~pl~i~ia~~lL~~~lg~~~~l 419 (1159)
+.+.+.-..+...++++.++.+.. ..++|+++|++++|++.+++.+.. +..+....++++.+++++..... +..+
T Consensus 976 ~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~-~~~~ 1054 (1495)
T PLN03232 976 SSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVST-ISLW 1054 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 344444445555667777776643 348999999999999999987653 33333444444444433332111 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCS 499 (1159)
Q Consensus 420 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~ 499 (1159)
+.+.+.++.........+..+..++.....+....+..+|.++|+++||.|++|+.|.++.++..+...+..........
T Consensus 1055 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1134 (1495)
T PLN03232 1055 AIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNR 1134 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211111122222222333445555566667777889999999999999999999988776665544443222111111
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHh-cCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001091 500 AIAFLFWASPTLVSVITF-GVCILL-KTPLT-----SGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKE 572 (1159)
Q Consensus 500 ~~~~~~~~~~~lv~~~~f-~~~~~~-~~~Lt-----~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~ 572 (1159)
+....... ....++.+ +.+.+. .+.+. ++.+..++++...+..|+..+...+..+..+.+|.+||.++++.
T Consensus 1135 wl~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~ 1212 (1495)
T PLN03232 1135 WLTIRLET--LGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDL 1212 (1495)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11111100 11111122 222222 22221 22333355666677889999999999999999999999999986
Q ss_pred cCCCCC--CC-CCC-CCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 573 DNQKKP--IT-EPT-SKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 573 ~e~~~~--~~-~~~-~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
+++.+. .. ..+ ..+.++.|+|+|++|+|+++ .+++|+| |++|++||++||||++|||||||+++|+|.+
T Consensus 1213 ~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~------~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~ 1286 (1495)
T PLN03232 1213 PSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG------LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV 1286 (1495)
T ss_pred CccccccccCCCCCCCCCCCCcEEEEEEEEEECCC------CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 552211 11 111 11234579999999999653 3579999 9999999999999999999999999999999
Q ss_pred cCCCCcEEEECC-------------EEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccc
Q 001091 648 PRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV 714 (1159)
Q Consensus 648 ~~~~G~i~~v~g-------------~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~I 714 (1159)
+|.+|+| .++| +++||||+|.+|+|||||||.+++++++++.+++++.|+|+++++.+|+|++|+|
T Consensus 1287 ~p~~G~I-~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v 1365 (1495)
T PLN03232 1287 ELEKGRI-MIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEV 1365 (1495)
T ss_pred cCCCceE-EECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCcee
Confidence 9999999 9988 4899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeC
Q 001091 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKD 794 (1159)
Q Consensus 715 Ge~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~ 794 (1159)
||+|.||||||||||+||||++++|+|+||||||||||++|++.| ++.++...+++|+|+||||++++..||+|+||++
T Consensus 1366 ~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~I-q~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~ 1444 (1495)
T PLN03232 1366 SEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLI-QRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSS 1444 (1495)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH-HHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999997765 6778888899999999999999999999999999
Q ss_pred CeEEEecChHHHHhhcchHHHHHHHHhh
Q 001091 795 GKIEQSGKYEDLIADQNSELVRQMKAHR 822 (1159)
Q Consensus 795 G~I~e~Gt~~eL~~~~~~~~~~l~~~~~ 822 (1159)
|+|+|.|+|+||++++++.|.++++.+.
T Consensus 1445 G~ivE~Gt~~eLl~~~~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1445 GQVLEYDSPQELLSRDTSAFFRMVHSTG 1472 (1495)
T ss_pred CEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 9999999999999844568999986643
No 38
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-63 Score=561.48 Aligned_cols=535 Identities=21% Similarity=0.278 Sum_probs=386.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHY-GLVLASVFLFAKTVESLTQRQWYFGANR 344 (1159)
Q Consensus 266 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~-g~~l~~~l~~~~~~~~l~~~~~~~~~~r 344 (1159)
++..++ .|+.+++++++.++..+....--.+-..+|....-.. ..+.+ -++-+++.=...+..+....--...+..
T Consensus 8 i~l~~~-~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag--~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~ 84 (573)
T COG4987 8 LRLYKR-HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAG--LAYIFNVMLPSAGVRGLAILRTAARYVERLVSHD 84 (573)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 344444 6777777777777766655544444455664322111 10111 1111222222333444443333333445
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHhhhHHHH
Q 001091 345 IGIRVRSALTVLIYKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVIL--YKNLGAAPAF 419 (1159)
Q Consensus 345 ~~~riR~~L~~~iy~K~L~ls~~~~---~~G~i~nlms~D~~~i~~~~~~~~~~w~~pl~i~ia~~lL--~~~lg~~~~l 419 (1159)
...|+-+.++-.+|+|....+.... ..|++.|++..|++.+++.+......|...+-++.++.+. +..++ .+.+
T Consensus 85 AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~-~All 163 (573)
T COG4987 85 ATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIP-LALL 163 (573)
T ss_pred HHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH-HHHH
Confidence 5667788888999999988876432 8999999999999999999887777776655444433332 44444 5555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHH---HHHH
Q 001091 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLK---KYLY 496 (1159)
Q Consensus 420 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~---~~~~ 496 (1159)
.++...+..+.+...+.++.++..++..+.+..-.+...|.+.|+...+++|.++.|.+.+++. |..+.+ |...
T Consensus 164 l~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~---e~~~~~~q~k~~~ 240 (573)
T COG4987 164 LGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEAT---EASWLKAQRKQAR 240 (573)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 5555555555555666677777777887788887888999999999999999999998877653 222222 1111
Q ss_pred HHHHHHHHHHHH-HHHHH--HHHHHHHHHhcCCcC-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Q 001091 497 TCSAIAFLFWAS-PTLVS--VITFGVCILLKTPLT-SGAVLSALATFRILQEPIY-NLPELISMIAQTKVSLYRIQEFIK 571 (1159)
Q Consensus 497 ~~~~~~~~~~~~-~~lv~--~~~f~~~~~~~~~Lt-~~~vft~l~l~~~l~~pl~-~lp~~i~~~~~a~vs~~RI~~fL~ 571 (1159)
......+...+. ..+++ +++++ ...-.+..+ +..+...+..|..+- +.. ..|..+....++..|.+|+.+.++
T Consensus 241 ~~~~~~a~~~l~~g~~v~~~l~w~a-~~~~~G~~~~~~aa~~ll~~f~~~e-af~~L~~~A~~~lgq~~~Sa~Rl~~i~~ 318 (573)
T COG4987 241 FTGLSDAILLLIAGLLVIGLLLWMA-AQVGAGALAQPGAALALLVIFAALE-AFEPLAPGAFQHLGQVIASARRLNDILD 318 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcCcCCCcchhHHHHHHHHHHHHHH-HHhhhcchhHHHhhHHHHHHHHHhhhcc
Confidence 222222222211 11111 12222 112223333 333333333333332 222 233777889999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCC
Q 001091 572 EDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI 650 (1159)
Q Consensus 572 ~~e~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~ 650 (1159)
.+++.......... .+..++++|++|+|+++ +.++|+| ||++++||++||+|++|||||||+++|.|-++|+
T Consensus 319 q~~e~~~~~~~~~~-~~~~l~~~~vsF~y~~~------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~ 391 (573)
T COG4987 319 QKPEVTFPDEQTAT-TGQALELRNVSFTYPGQ------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ 391 (573)
T ss_pred CCcccCCCccccCC-ccceeeeccceeecCCC------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC
Confidence 77622211111111 12279999999999976 5689999 9999999999999999999999999999999999
Q ss_pred CCcEEEECC-------------EEEEEecCCCCCCCcHHHHHhcCCCC-ChHHHHHHHHHhccchHHHhccCCCCccccC
Q 001091 651 SGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1159)
Q Consensus 651 ~G~i~~v~g-------------~iayv~Q~pwi~~gTIreNIlfG~~~-d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe 716 (1159)
+|+| ..+| .++.++|.+.+|++|+|||+..++|. ++|...++++..+|++-++..|+|++|.+||
T Consensus 392 ~G~i-~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge 470 (573)
T COG4987 392 QGSI-TLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGE 470 (573)
T ss_pred CCee-eECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhcc
Confidence 9999 8887 48999999999999999999999874 6788999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCe
Q 001091 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1159)
Q Consensus 717 ~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~ 796 (1159)
+|.+||||||||++|||++.+|++++||||||.+||+.|++++.+. +...++|||+|+||||+..++++|+|+||+||+
T Consensus 471 ~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~l-l~~~~~~kTll~vTHrL~~le~~drIivl~~Gk 549 (573)
T COG4987 471 GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL-LFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGK 549 (573)
T ss_pred CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHH-HHHHhcCCeEEEEecccccHhhcCEEEEEECCe
Confidence 9999999999999999999999999999999999999999999875 556678999999999999999999999999999
Q ss_pred EEEecChHHHHhhcchHHHHHHH
Q 001091 797 IEQSGKYEDLIADQNSELVRQMK 819 (1159)
Q Consensus 797 I~e~Gt~~eL~~~~~~~~~~l~~ 819 (1159)
|+|+|+|+||++ +++.|.++.+
T Consensus 550 iie~G~~~~Ll~-~~g~~~~l~q 571 (573)
T COG4987 550 IIEEGTHAELLA-NNGRYKRLYQ 571 (573)
T ss_pred eeecCCHHhhhc-cccHHHHHhc
Confidence 999999999999 8888887753
No 39
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.4e-62 Score=656.11 Aligned_cols=462 Identities=17% Similarity=0.194 Sum_probs=353.0
Q ss_pred HHHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHH
Q 001091 352 ALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIF 427 (1159)
Q Consensus 352 ~L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l~~~i~ 427 (1159)
.+...+|++.++.+.. ..+.|+++|++++|++.+.+.+. .+..+....+.++.+++++..... +..++.+.++++
T Consensus 1032 ~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p-~~~~~~i~~~~~ 1110 (1560)
T PTZ00243 1032 NMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQP-FVLVALVPCGYL 1110 (1560)
T ss_pred HHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4456677777776643 34899999999999999998765 344445555555555444443222 222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 001091 428 VMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFL-FW 506 (1159)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~-~~ 506 (1159)
...+...+.+..+..++.....++.-.+.++|.++|+++||.|++|+.|.++..+.-+...+...+......+.... ..
T Consensus 1111 ~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~ 1190 (1560)
T PTZ00243 1111 YYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEF 1190 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333344555556666666677777899999999999999999999988887654333333221111111111111 11
Q ss_pred HH-HHHHHHHHHHHH--HHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CC-CCC--
Q 001091 507 AS-PTLVSVITFGVC--ILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QK-KPI-- 579 (1159)
Q Consensus 507 ~~-~~lv~~~~f~~~--~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e-~~-~~~-- 579 (1159)
.. ...+.++.++++ ....+.++++.+..++.+...+..|+..+...+..+.++.+|.+||.++++..+ ++ ...
T Consensus 1191 l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~ 1270 (1560)
T PTZ00243 1191 LSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDE 1270 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccc
Confidence 11 111112222222 222345789988888888888999999999999999999999999999996432 11 000
Q ss_pred ----------------------CC-C----CCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcC
Q 001091 580 ----------------------TE-P----TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGS 631 (1159)
Q Consensus 580 ----------------------~~-~----~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~ 631 (1159)
.. . +..+..+.|+|+|++|+|+++ .+++|+| ||+|++||++||||+
T Consensus 1271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~------~~~vL~~vsf~I~~GekVaIVGr 1344 (1560)
T PTZ00243 1271 EVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG------LPLVLRGVSFRIAPREKVGIVGR 1344 (1560)
T ss_pred cccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC------CCceeecceEEECCCCEEEEECC
Confidence 00 0 011123579999999999754 3569999 999999999999999
Q ss_pred CCCChhHHHHHHhCCccCCCCcEEEECC-------------EEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhc
Q 001091 632 VGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCA 698 (1159)
Q Consensus 632 ~GSGKSTLL~~llGe~~~~~G~i~~v~g-------------~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~ 698 (1159)
+|||||||+++|+|.++|.+|+| .++| .++||||+|.||+|||||||..+.+++++..+++++.|+
T Consensus 1345 TGSGKSTLl~lLlrl~~p~~G~I-~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~ 1423 (1560)
T PTZ00243 1345 TGSGKSTLLLTFMRMVEVCGGEI-RVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVG 1423 (1560)
T ss_pred CCCCHHHHHHHHhCCCCCCCcEE-EECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCC
Confidence 99999999999999999999999 9987 489999999999999999999888899999999999999
Q ss_pred cchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEc
Q 001091 699 LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN-SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTT 777 (1159)
Q Consensus 699 L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~-a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVT 777 (1159)
|+++++.+|+|++|.|||+|.||||||||||+||||++++ |+|+|||||||+||+++++.| ++.++...+++|+|+||
T Consensus 1424 l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~I-q~~L~~~~~~~TvI~IA 1502 (1560)
T PTZ00243 1424 LRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQI-QATVMSAFSAYTVITIA 1502 (1560)
T ss_pred ChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHH-HHHHHHHCCCCEEEEEe
Confidence 9999999999999999999999999999999999999996 999999999999999998866 67788888999999999
Q ss_pred cCcccccccCEEEEEeCCeEEEecChHHHHhhcchHHHHHHHHhh
Q 001091 778 HQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHR 822 (1159)
Q Consensus 778 H~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~~l~~~~~ 822 (1159)
||++++..||+|+||++|+|+|.|+|+||++++++.|.++++...
T Consensus 1503 HRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1503 HRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred ccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 999999999999999999999999999999745789999986643
No 40
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.4e-59 Score=625.01 Aligned_cols=467 Identities=19% Similarity=0.230 Sum_probs=351.8
Q ss_pred HHHHHHHHHHHHHHHHHhcccC---CCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhhhHHHHH
Q 001091 345 IGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1159)
Q Consensus 345 ~~~riR~~L~~~iy~K~L~ls~---~~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~ 420 (1159)
.+.+.-..+...++++.++.+. ...++|+++|+++.|++.+.+.+. .+..+....+.+++.+++++...+ +.+++
T Consensus 952 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p-~l~l~ 1030 (1490)
T TIGR01271 952 TLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQP-YIFIA 1030 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3444444555566667766654 234899999999999999998765 344545555555555554443333 33332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (1159)
Q Consensus 421 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~ 500 (1159)
.+.++++.+.+..+..+..+..++.....++...+...|.++|+.+||.|++|+.|.++..+.-+...+..........+
T Consensus 1031 ~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 1110 (1490)
T TIGR01271 1031 AIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRW 1110 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233333333444444455566666677778889999999999999999999999988877544322211111111111
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC-C
Q 001091 501 IAFLF-WASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK-P 578 (1159)
Q Consensus 501 ~~~~~-~~~~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~-~ 578 (1159)
..... .....++..+.+ ..+.....+++.+..++++...+..++..+...+..+..+.+|.+||.+|++.+++.+ .
T Consensus 1111 l~~~~~~i~~~~~~~~~~--l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~ 1188 (1490)
T TIGR01271 1111 FQMRIDIIFVFFFIAVTF--IAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRP 1188 (1490)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 11000 000011111111 1111123456666666667777788888888899999999999999999997654211 1
Q ss_pred CC----------------C-CCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHH
Q 001091 579 IT----------------E-PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLL 640 (1159)
Q Consensus 579 ~~----------------~-~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL 640 (1159)
.. . ++..+..+.|+|+|++|+|+++ .+++|+| ||+|++||++||||++|||||||+
T Consensus 1189 ~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~------~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl 1262 (1490)
T TIGR01271 1189 SGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA------GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLL 1262 (1490)
T ss_pred cccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC------CcceeeccEEEEcCCCEEEEECCCCCCHHHHH
Confidence 00 0 0111234679999999999864 3689999 999999999999999999999999
Q ss_pred HHHhCCccCCCCcEEEECC-------------EEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhcc
Q 001091 641 SSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWA 707 (1159)
Q Consensus 641 ~~llGe~~~~~G~i~~v~g-------------~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp 707 (1159)
++|+|+++ .+|+| .++| +++||||+|.||+|||||||....++++++.+++++.|+|.++++.+|
T Consensus 1263 ~lL~rl~~-~~G~I-~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp 1340 (1490)
T TIGR01271 1263 SALLRLLS-TEGEI-QIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFP 1340 (1490)
T ss_pred HHHhhhcC-CCcEE-EECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCc
Confidence 99999997 79999 8887 489999999999999999998877889999999999999999999999
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccC
Q 001091 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAAD 787 (1159)
Q Consensus 708 ~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD 787 (1159)
+|++|.|||+|.|||||||||++||||++++|+|+|||||||+||++|++.| ++.|+...+++|+|+||||++++..+|
T Consensus 1341 ~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I-~~~L~~~~~~~TvI~IaHRl~ti~~~D 1419 (1490)
T TIGR01271 1341 DKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQII-RKTLKQSFSNCTVILSEHRVEALLECQ 1419 (1490)
T ss_pred cccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999998766 667888889999999999999999999
Q ss_pred EEEEEeCCeEEEecChHHHHhhcchHHHHHHHHhhhc
Q 001091 788 LVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKS 824 (1159)
Q Consensus 788 ~Iivl~~G~I~e~Gt~~eL~~~~~~~~~~l~~~~~~~ 824 (1159)
+|+||++|+|+|.|+|++|++ .++.|.++++.+.+.
T Consensus 1420 rIlvL~~G~ivE~g~p~~Ll~-~~~~f~~l~~~~~~~ 1455 (1490)
T TIGR01271 1420 QFLVIEGSSVKQYDSIQKLLN-ETSLFKQAMSAADRL 1455 (1490)
T ss_pred EEEEEECCEEEEeCCHHHHHc-CCcHHHHHHHHhChh
Confidence 999999999999999999998 788999998766543
No 41
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=5.4e-59 Score=572.00 Aligned_cols=509 Identities=14% Similarity=0.130 Sum_probs=368.7
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 269 IIH-AVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (1159)
Q Consensus 269 l~~-~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~ 347 (1159)
+++ .+++.++.+.++.++..++....|.+++.+++...... ... .+.+++ +++. ..++.....+...+.+.
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~---~~~-~~~~~~-~~~~---~~~~~~~~~~~~~~~~~ 82 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG---QGS-LFSFGG-LCLL---ALLFRIGADIFPAYAGM 82 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc---chH-HHHHHH-HHHH---HHHHHHHHHHHHHHHHH
Confidence 566 78888999999999999999999999998876321110 111 111222 1111 12222223334566788
Q ss_pred HHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHH
Q 001091 348 RVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1159)
Q Consensus 348 riR~~L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l~~ 424 (1159)
++...+...+|+|.++++.. ..++|++++++++|++.+.+++..+.......+.+++++++++.. .|..+++.++.
T Consensus 83 ~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~L~li~l~~ 161 (555)
T TIGR01194 83 HIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYL-SVPMFAITISA 161 (555)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHH
Confidence 88888888999999998753 348999999999999999988755445555545444444444332 22334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQ--EFLKKLLRLREIERDSLKKYLYTCSAIA 502 (1159)
Q Consensus 425 ~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~--~f~~~i~~~R~~E~~~l~~~~~~~~~~~ 502 (1159)
+++.+.+..+..++.++...+..+..++..+.+.|.++|++++|.++.++ ...+++++..++..+...+.........
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
T TIGR01194 162 IIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAE 241 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555566667777778888888999999999999999999854 3333333322211111111111111111
Q ss_pred HHHHHHHHHHHH--HHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-C-CC-
Q 001091 503 FLFWASPTLVSV--ITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-Q-KK- 577 (1159)
Q Consensus 503 ~~~~~~~~lv~~--~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e-~-~~- 577 (1159)
........+... +.++. ..+.++.+.+++++.+...+..|+..+...+..+.++++|.+||.++++.++ + ..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~---~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~ 318 (555)
T TIGR01194 242 NFGQLLFFLLIGCALFAAA---MFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPEL 318 (555)
T ss_pred HHHHHHHHHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 101111111111 11111 1257999999999999999999999999999999999999999999986422 1 10
Q ss_pred -CCCCC-----CCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCC
Q 001091 578 -PITEP-----TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI 650 (1159)
Q Consensus 578 -~~~~~-----~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~ 650 (1159)
..... +.......|+++|++|+|++.+. ...++|+| |+++++||+++|+||+|||||||+++|+|+++|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~---~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~ 395 (555)
T TIGR01194 319 ELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEG---SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ 395 (555)
T ss_pred cccccccccccccCCCCceEEEEEEEEEeCCCCC---CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 00000 11112356999999999975300 12468999 9999999999999999999999999999999999
Q ss_pred CCcEEEECC-------------EEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCC
Q 001091 651 SGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1159)
Q Consensus 651 ~G~i~~v~g-------------~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~ 717 (1159)
+|+| .++| .++||+|+|++|++|++||+ ..+.++++.+++++.++++++++.+|+|++|.
T Consensus 396 ~G~i-~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~---- 468 (555)
T TIGR01194 396 EGEI-LLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT---- 468 (555)
T ss_pred CcEE-EECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc----
Confidence 9999 8887 37999999999999999996 34457788899999999999999999999994
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCcccccccCEEEEEeCCe
Q 001091 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1159)
Q Consensus 718 G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~-l~~kTvIlVTH~l~~l~~aD~Iivl~~G~ 796 (1159)
.+|||||||||+||||++++|+|+|||||||+||+++++.+.+..++.. .+++|+|+||||++.+..||+|++|++|+
T Consensus 469 -~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~ 547 (555)
T TIGR01194 469 -TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGC 547 (555)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCE
Confidence 8999999999999999999999999999999999999998877665444 46899999999999999999999999999
Q ss_pred EEEe
Q 001091 797 IEQS 800 (1159)
Q Consensus 797 I~e~ 800 (1159)
|+|.
T Consensus 548 i~~~ 551 (555)
T TIGR01194 548 IVKD 551 (555)
T ss_pred EEEe
Confidence 9874
No 42
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.4e-58 Score=522.12 Aligned_cols=527 Identities=21% Similarity=0.263 Sum_probs=418.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 263 TSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGA 342 (1159)
Q Consensus 263 ~sl~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~ 342 (1159)
.....+....+++.++..+++..+-.++.+++|+++-++.|-+-...+ .+. ...+.++....++++.+.+..-.+..
T Consensus 11 ~~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s-~~T--Lv~Ltvlal~ly~~~glLd~iR~~~l 87 (580)
T COG4618 11 KNLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRS-VPT--LVMLTVLALGLYAFQGLLDAIRSRVL 87 (580)
T ss_pred CchhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCC-cch--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777888889999999999999999999999999998765443 222 23344444445555566655556677
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhHHhhhHH
Q 001091 343 NRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLY-----IHRIWLLPVQVFLALVILYKNLGAAP 417 (1159)
Q Consensus 343 ~r~~~riR~~L~~~iy~K~L~ls~~~~~~G~i~nlms~D~~~i~~~~~~-----~~~~w~~pl~i~ia~~lL~~~lg~~~ 417 (1159)
.|+|.++-..|...+|.-+++.+...+..|+-..- -.|.+.+..|+.. +.+.--.|+-+.+ ++++.-.+| +.
T Consensus 88 ~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~-LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v-~fl~Hp~lG-~~ 164 (580)
T COG4618 88 VRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQP-LRDLDQVRQFLTGTGLTAFFDAPWMPLYLAV-IFLFHPWLG-LI 164 (580)
T ss_pred HHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccc-hhhHHHHHHHHcCCCcchhcCCchHHHHHHH-HHHHHHHHH-HH
Confidence 89999999999999999887555444433322221 2488888887642 3343334654444 345556788 77
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 418 AFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYT 497 (1159)
Q Consensus 418 ~l~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~ 497 (1159)
+++|.++++.+..+|-...+ +-.++-.+..-+|....+-.++|..+|+.+|..+...+++.+....-++...+....
T Consensus 165 a~~ga~iLv~la~ln~~~t~---~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~ 241 (580)
T COG4618 165 ALAGAIILVVLALLNERATR---KPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDR 241 (580)
T ss_pred HHHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 77777777777777766554 344556677788889999999999999999999999999988777666655554433
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001091 498 CSAIAFLFWASPT--LVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (1159)
Q Consensus 498 ~~~~~~~~~~~~~--lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~ 575 (1159)
........-..-. -..+...|.|+++++++|+|.+++.--+..-.-.|+......+.++..++.|.+|++++|...+.
T Consensus 242 ~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~ 321 (580)
T COG4618 242 NGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPA 321 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 3322222111111 12345578888899999999999988888888889999999999999999999999999987653
Q ss_pred CCCCCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcE
Q 001091 576 KKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1159)
Q Consensus 576 ~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i 654 (1159)
.+..-..| ..++.+.++++++.-|+. .+|++++ ||.+++||-++|+||||||||||.++|.|-.+|.+|+|
T Consensus 322 ~~~~m~LP--~P~g~L~Ve~l~~~PPg~------~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~V 393 (580)
T COG4618 322 AAERMPLP--APQGALSVERLTAAPPGQ------KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSV 393 (580)
T ss_pred ccCCCCCC--CCCceeeEeeeeecCCCC------CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcE
Confidence 32222233 345789999999987654 5799999 99999999999999999999999999999999999999
Q ss_pred EEECC-------------EEEEEecCCCCCCCcHHHHH-hcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 655 IKVHG-------------KKAYVPQSSWIQTGTIRENI-LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 655 ~~v~g-------------~iayv~Q~pwi~~gTIreNI-lfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.+|| +|||.||+--||.|||+||| .|+++.|+++.-++.++++.++-|-.||+||||.|||.|.+
T Consensus 394 -RLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~ 472 (580)
T COG4618 394 -RLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGAT 472 (580)
T ss_pred -EecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCC
Confidence 9987 69999999999999999999 59988999888888888888999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCcccccccCEEEEEeCCeEEE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~-l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e 799 (1159)
|||||||||+||||+|.||.+++||||-|+||.+-|..+.+ +|... .+|.|+|+||||++.+..+|+|++|+||++..
T Consensus 473 LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~-Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~ 551 (580)
T COG4618 473 LSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAA-AILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAA 551 (580)
T ss_pred CCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHH-HHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHh
Confidence 99999999999999999999999999999999998887754 55544 46899999999999999999999999999999
Q ss_pred ecChHHHHh
Q 001091 800 SGKYEDLIA 808 (1159)
Q Consensus 800 ~Gt~~eL~~ 808 (1159)
.|+-+|.++
T Consensus 552 FG~r~eVLa 560 (580)
T COG4618 552 FGPREEVLA 560 (580)
T ss_pred cCCHHHHHH
Confidence 999999987
No 43
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=7.7e-57 Score=552.75 Aligned_cols=506 Identities=15% Similarity=0.162 Sum_probs=357.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIG-PFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGAN 343 (1159)
Q Consensus 265 l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~-P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 343 (1159)
+++.+++.+++.++...++.++..++..+. |++.+.+++.+.+ . ... ...+++.+++..++..+ ..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~--~~~--~~~~~~~~~~~~~~~~~----~~~~~~ 73 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT-S--LLV--LPEFLGLLLLLMAVTLG----SQLALT 73 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-c--chH--HHHHHHHHHHHHHHHHH----HHHHHH
Confidence 567788889999999999999999888774 6777888886532 1 111 11111111112222222 222334
Q ss_pred HHHHHHHHHHHHHHHHHHhcccC---CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHH
Q 001091 344 RIGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1159)
Q Consensus 344 r~~~riR~~L~~~iy~K~L~ls~---~~~~~G~i~nlms~D~~~i~~~~~~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~ 420 (1159)
+++.++...+...+|+|.++++. ..+++|+++|++++|++.+..++..+..++...+.+++++++++.. .|..+++
T Consensus 74 ~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~-~~~l~li 152 (547)
T PRK10522 74 TLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWL-SPKMLLV 152 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHH
Confidence 45666666677778888888764 2348999999999999999887666666777777777766665543 3355555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLS--WEQEFLKKLLRLREIERDSLKKYLYTC 498 (1159)
Q Consensus 421 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~--wE~~f~~~i~~~R~~E~~~l~~~~~~~ 498 (1159)
.++++++.+.+...+.++.++..++.++..+++.+.++|.++|++++++.+ .++.+.++.++..++-.+...+.....
T Consensus 153 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (547)
T PRK10522 153 TAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADTFH 232 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHH
Confidence 555555666666777888888888899999999999999999999997432 223444444443221111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC---CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001091 499 SAIAFLFWASPTLVSVITFGVCILLKT---PLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (1159)
Q Consensus 499 ~~~~~~~~~~~~lv~~~~f~~~~~~~~---~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~ 575 (1159)
....... .+.....++.+.+.++ ..+.+.+.....+...+..|+..+...+..+.+++++.+|+.+++..+++
T Consensus 233 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~ 308 (547)
T PRK10522 233 LSAVNWS----NIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYK 308 (547)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 1111110 1111111222222221 12222222222233346789999999999999999999999999865442
Q ss_pred CCCCCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcE
Q 001091 576 KKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1159)
Q Consensus 576 ~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i 654 (1159)
++.....+. +....|+++|++|+|+++ +++|+| |+++++||+++|+||+|||||||+++|+|+++|.+|+|
T Consensus 309 ~~~~~~~~~-~~~~~i~~~~v~f~y~~~-------~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i 380 (547)
T PRK10522 309 AEFPRPQAF-PDWQTLELRNVTFAYQDN-------GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380 (547)
T ss_pred ccccccccc-CcCceEEEEEEEEEeCCC-------CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 111111111 112469999999999743 468999 99999999999999999999999999999999999999
Q ss_pred EEECC-------------EEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCC
Q 001091 655 IKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1159)
Q Consensus 655 ~~v~g-------------~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~L 721 (1159)
.++| +++||+|+|++|++|++|| +.+.++++.+++++.+++..+++. ++|. .+|.+|
T Consensus 381 -~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~L 450 (547)
T PRK10522 381 -LLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKL 450 (547)
T ss_pred -EECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCC
Confidence 8876 4899999999999999999 566777888888888888776653 3332 258999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccccCEEEEEeCCeEEE
Q 001091 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1159)
Q Consensus 722 SGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e 799 (1159)
|||||||++||||++++|+++|||||||+||+++++.+.+. +...+ +++|+|+||||++.++.||+|++|++|+++|
T Consensus 451 SgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~-l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e 529 (547)
T PRK10522 451 SKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQV-LLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529 (547)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999887654 44333 4899999999999999999999999999998
Q ss_pred e-cCh
Q 001091 800 S-GKY 803 (1159)
Q Consensus 800 ~-Gt~ 803 (1159)
. |++
T Consensus 530 ~~~~~ 534 (547)
T PRK10522 530 LTGEE 534 (547)
T ss_pred ecCCc
Confidence 6 443
No 44
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-59 Score=514.59 Aligned_cols=456 Identities=22% Similarity=0.291 Sum_probs=361.3
Q ss_pred HHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHH
Q 001091 353 LTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (1159)
Q Consensus 353 L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~~-~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l~~~i~~ 428 (1159)
+.-..|++.+.|+.. ++.+|.+..-+....+.|+...++ +..+....+++.+..+++++..||+.+...++.+++.
T Consensus 17 la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~lY 96 (497)
T COG5265 17 LAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILY 96 (497)
T ss_pred HHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 444556777666643 236666555555555555555543 3445556689999999999999977777666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001091 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFW-- 506 (1159)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~-- 506 (1159)
..+..........++++..++-.+......+.|-|-.++|.|+-|+.+.++..+..+.-.+...|......+..+...
T Consensus 97 ~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I 176 (497)
T COG5265 97 LLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAI 176 (497)
T ss_pred HHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 555555555555666666555555666788999999999999999988877765433322222222111111111100
Q ss_pred HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCCC
Q 001091 507 ASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QKKPITEPTSK 585 (1159)
Q Consensus 507 ~~~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e-~~~~~~~~~~~ 585 (1159)
.+..+....+.+..-+..+.+|.|.....-++...+..|++.+......+.|++..+++..+.+..+- ..+....++-.
T Consensus 177 ~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~ 256 (497)
T COG5265 177 FSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLW 256 (497)
T ss_pred HHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCcccc
Confidence 11112223333444456788999999999999999999999999999999999999999999987654 22221212211
Q ss_pred -CCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE---
Q 001091 586 -ASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--- 660 (1159)
Q Consensus 586 -~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~--- 660 (1159)
...+.|.|+|++|.|++. .|.|++ |+.+++|+++||||++|+||||+++.|.++|++++|.| .++|+
T Consensus 257 ~~~~g~v~F~~V~F~y~~~-------r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I-~id~qdir 328 (497)
T COG5265 257 PVRLGAVAFINVSFAYDPR-------RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI-TIDGQDIR 328 (497)
T ss_pred ccccceEEEEEEEeecccc-------chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE-EEcchhHH
Confidence 234679999999999865 789999 99999999999999999999999999999999999999 99883
Q ss_pred ----------EEEEecCCCCCCCcHHHHHhcCCCC-ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHH
Q 001091 661 ----------KAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1159)
Q Consensus 661 ----------iayv~Q~pwi~~gTIreNIlfG~~~-d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRI 729 (1159)
||.|||+..|||+||..||.+|+|- .++....+.+++++++.++.+|+|++|.|||+|-.||||+||||
T Consensus 329 ~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrv 408 (497)
T COG5265 329 DVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRV 408 (497)
T ss_pred HhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHH
Confidence 8999999999999999999999974 56777889999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHHHhh
Q 001091 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIAD 809 (1159)
Q Consensus 730 aLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~ 809 (1159)
++||++.++|+|++|||+|||||.||++.| |..++...+|+|.++|+||++++-.||+|+||+||+|+|.|+|+||++
T Consensus 409 aiar~ilk~p~il~~deatsaldt~te~~i-q~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~- 486 (497)
T COG5265 409 AIARTILKNPPILILDEATSALDTHTEQAI-QAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLA- 486 (497)
T ss_pred HHHHHHhcCCCEEEEehhhhHhhhhHHHHH-HHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHH-
Confidence 999999999999999999999999998876 777888999999999999999999999999999999999999999999
Q ss_pred cchHHHHHH
Q 001091 810 QNSELVRQM 818 (1159)
Q Consensus 810 ~~~~~~~l~ 818 (1159)
.+|.|+++.
T Consensus 487 ~~g~ya~mw 495 (497)
T COG5265 487 AGGLYAEMW 495 (497)
T ss_pred cCChHHHHh
Confidence 799998875
No 45
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-55 Score=560.01 Aligned_cols=464 Identities=21% Similarity=0.264 Sum_probs=351.2
Q ss_pred HHHHHHHHHHHHHHHHhcccC---CCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHhhhHHHHHH
Q 001091 346 GIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFLYIH-RIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1159)
Q Consensus 346 ~~riR~~L~~~iy~K~L~ls~---~~~~~G~i~nlms~D~~~i~~~~~~~~-~~w~~pl~i~ia~~lL~~~lg~~~~l~~ 421 (1159)
+++.-..|-..++++.++-+. ...++|.|+|+.|.|++.+++-+.... ......++++..++++-.... +..++.
T Consensus 886 ~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P-~fli~~ 964 (1381)
T KOG0054|consen 886 GLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTP-WFLIAI 964 (1381)
T ss_pred HHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhH-HHHHHH
Confidence 344444444555555555443 233899999999999999998766443 333444444444433332222 333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1159)
Q Consensus 422 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~ 501 (1159)
+.+.++...+..+..+-.+..++--...+.--..-.+|.++|+-+|+.|+.|++|.++....-+.-.+.. .+..+.+
T Consensus 965 ~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~---f~~~~a~ 1041 (1381)
T KOG0054|consen 965 IPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAF---FLSISAN 1041 (1381)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHH---HHHHHHH
Confidence 3333333333333322222222222223344456789999999999999999999998876554433321 1111111
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-C
Q 001091 502 AFLFW----ASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-K 576 (1159)
Q Consensus 502 ~~~~~----~~~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~-~ 576 (1159)
-.+.. ....++..+++...+..++..++|.+--++++.-.+..-++.+......+-...+|.+|+.+|.+.|++ +
T Consensus 1042 RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p 1121 (1381)
T KOG0054|consen 1042 RWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAP 1121 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCC
Confidence 11111 111222222222222222237799998888888888888888888899999999999999999995542 1
Q ss_pred ---CCCCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCC
Q 001091 577 ---KPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1159)
Q Consensus 577 ---~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G 652 (1159)
+....++..+.++.|+|+|.+..|.++ .+++|++ |++|+|||+|+|||++|||||||+++|.+..+|.+|
T Consensus 1122 ~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~------lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G 1195 (1381)
T KOG0054|consen 1122 LEIEESRPPPSWPSKGEIEFEDLSLRYRPN------LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEG 1195 (1381)
T ss_pred CCCcCCCCCCCCCCCCeEEEEEeEEEeCCC------CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCC
Confidence 111123344677899999999999875 5789999 999999999999999999999999999999999999
Q ss_pred cEEEECC-------------EEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCC
Q 001091 653 AAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1159)
Q Consensus 653 ~i~~v~g-------------~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~ 719 (1159)
+| .+|| +++..||||.||+||||.|+---.+|+++..+++++.|+|.+.++++|+|.|++|.|+|.
T Consensus 1196 ~I-~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~ 1274 (1381)
T KOG0054|consen 1196 EI-LIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGE 1274 (1381)
T ss_pred eE-EEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCc
Confidence 99 9988 589999999999999999999989999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEE
Q 001091 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1159)
Q Consensus 720 ~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e 799 (1159)
|+|-||||-+|||||+.++++|++|||+|+++|++|. .++|+.|+...+++|||.|+||++++-++|+|+|||+|+|+|
T Consensus 1275 N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD-~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~E 1353 (1381)
T KOG0054|consen 1275 NFSVGQRQLLCLARALLRKSKILVLDEATASVDPETD-ALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVE 1353 (1381)
T ss_pred cCChHHHHHHHHHHHHhccCCEEEEecccccCChHHH-HHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEee
Confidence 9999999999999999999999999999999999995 577999999999999999999999999999999999999999
Q ss_pred ecChHHHHhhcchHHHHHHHHh
Q 001091 800 SGKYEDLIADQNSELVRQMKAH 821 (1159)
Q Consensus 800 ~Gt~~eL~~~~~~~~~~l~~~~ 821 (1159)
.|++++|++++++.|.+++.+.
T Consensus 1354 fdsP~~Ll~~~~S~f~~~l~~~ 1375 (1381)
T KOG0054|consen 1354 FDSPAELLSDKDSLFSSLLKEA 1375 (1381)
T ss_pred cCChHHHHhCCcchHHHHHHHH
Confidence 9999999986788887665543
No 46
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.8e-53 Score=530.34 Aligned_cols=501 Identities=17% Similarity=0.167 Sum_probs=371.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 276 SLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSY-HYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALT 354 (1159)
Q Consensus 276 ~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~-~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~riR~~L~ 354 (1159)
.++..+++.++.+++....|++.+.+++.+.+++. ... .....+++.+++..++.++. .|...++..++|..+.
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~-~~f~~~l~~~~l~~~~~~~~~~~~----~~~~~~~~~~~r~~l~ 171 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSP-RNFAWILFKWFLIAPPASFINSAI----KYLLKELKLRFRVRLT 171 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 56677888888899999999999999998764432 111 10112222233333333333 3335556666776666
Q ss_pred HHHHHHHhcc----c--CCCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHH
Q 001091 355 VLIYKRSMAI----K--FAGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIF 427 (1159)
Q Consensus 355 ~~iy~K~L~l----s--~~~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l~~~i~ 427 (1159)
..+.++.++- + ..+..+|++.+++++|++.+.+.+. .+..+...++.++.+++.++..++|..++..++.+++
T Consensus 172 ~~l~~~~~~~~~~~~~~~~d~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l 251 (659)
T TIGR00954 172 RYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFA 251 (659)
T ss_pred HHHHHHHhCCCceEEeccCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 6666666542 1 1112489999999999999988765 4455566667777777777766775555555666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 428 VMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWA 507 (1159)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~ 507 (1159)
.+.+...+.++..+..++..+..++-....+|.++|+++||.|+-|+...+++++.-++-.+...+.....+....+...
T Consensus 252 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (659)
T TIGR00954 252 TGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNI 331 (659)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 77777888888899999999999999999999999999999999999888877665444334333333333322222211
Q ss_pred HH----HHHHHHHHHHHHHh-c----CCcCHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 001091 508 SP----TLVSVITFGVCILL-K----TPLTSGAVLS-AL---ATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN 574 (1159)
Q Consensus 508 ~~----~lv~~~~f~~~~~~-~----~~Lt~~~vft-~l---~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e 574 (1159)
.. ..+..+..+..++. . +.+|.+..+. ++ .++..+..|+..+...+..+.++.++.+|+.++++.++
T Consensus 332 i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 332 VAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11212222232222 1 5688887554 23 34667789999999999999999999999999997533
Q ss_pred C-C-----CC-CCC-----------------CCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEE
Q 001091 575 Q-K-----KP-ITE-----------------PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVC 629 (1159)
Q Consensus 575 ~-~-----~~-~~~-----------------~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIv 629 (1159)
+ . +. ... .......+.|+++|++|.|+++ .+++++ |+++++||.++|+
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-------~~il~~isl~i~~Ge~~~Iv 484 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-------DVLIESLSFEVPSGNHLLIC 484 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-------CeeeecceEEECCCCEEEEE
Confidence 1 0 00 000 0000122469999999999743 468999 9999999999999
Q ss_pred cCCCCChhHHHHHHhCCccCCCCcEEEECC--EEEEEecCCCCCCCcHHHHHhcCC--------CCChHHHHHHHHHhcc
Q 001091 630 GSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQSSWIQTGTIRENILFGK--------DMRQSFYEEVLEGCAL 699 (1159)
Q Consensus 630 G~~GSGKSTLL~~llGe~~~~~G~i~~v~g--~iayv~Q~pwi~~gTIreNIlfG~--------~~d~~~y~~vl~ac~L 699 (1159)
||+|||||||+++|.|++++.+|++ .+++ +++||||+|+++++|++|||.++. ..++++.+++++.++|
T Consensus 485 G~nGsGKSTLl~lL~Gl~~~~~G~i-~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 563 (659)
T TIGR00954 485 GPNGCGKSSLFRILGELWPVYGGRL-TKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQL 563 (659)
T ss_pred CCCCCCHHHHHHHHhCCCCCCCCeE-eecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCC
Confidence 9999999999999999999999998 7754 699999999999999999999974 2456778899999999
Q ss_pred chHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccC
Q 001091 700 NQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQ 779 (1159)
Q Consensus 700 ~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~ 779 (1159)
++.++. |.|++|..+ .+.+||||||||++||||++++|+++|||||||+||+++++.+.+ .++. .|+|+|+|||+
T Consensus 564 ~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~-~l~~--~~~tvI~isH~ 638 (659)
T TIGR00954 564 THILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYR-LCRE--FGITLFSVSHR 638 (659)
T ss_pred HHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH-HHHH--cCCEEEEEeCc
Confidence 988877 999999986 567999999999999999999999999999999999999887755 4444 38999999999
Q ss_pred cccccccCEEEEEeC
Q 001091 780 LEFLDAADLVLVMKD 794 (1159)
Q Consensus 780 l~~l~~aD~Iivl~~ 794 (1159)
++.++.||+|++|++
T Consensus 639 ~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 639 KSLWKYHEYLLYMDG 653 (659)
T ss_pred hHHHHhCCEEEEEeC
Confidence 999999999999973
No 47
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-48 Score=441.93 Aligned_cols=260 Identities=21% Similarity=0.299 Sum_probs=222.4
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCCCCCCccEEEeeeEEEeCCc
Q 001091 525 TPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QKKPITEPTSKASDVAIDIEAGEYAWDAR 603 (1159)
Q Consensus 525 ~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e-~~~~~~~~~~~~~~~~I~~~~~sf~w~~~ 603 (1159)
++++++.+|+.++.|+.+..|+..+|..... ..|+++|+..++ +...... ..+.++.|+++|++++|++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~nls~~y~~~ 93 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKE--DFNHANVFEIRNFNFWYMNR 93 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccC--CCCcCceEEEEeeEEEecCC
Confidence 5689999999999999999999888765443 569999988766 2211111 12334679999999999743
Q ss_pred ccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc-----CCCCcEEEEC---------------CEEE
Q 001091 604 EENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVH---------------GKKA 662 (1159)
Q Consensus 604 ~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~-----~~~G~i~~v~---------------g~ia 662 (1159)
..++|+| ||+|++||+++|+|++|||||||+++|+|+++ |.+|+| .++ ++++
T Consensus 94 ------~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I-~idG~~i~~~~~~~~~lr~~i~ 166 (329)
T PRK14257 94 ------TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEI-YFLGTNTRSKKISSLELRTRIG 166 (329)
T ss_pred ------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-EECCEEccccccchHhhhccEE
Confidence 3568999 99999999999999999999999999999997 468987 553 3589
Q ss_pred EEecCCCCCCCcHHHHHhcCCCCC----hH----HHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHH
Q 001091 663 YVPQSSWIQTGTIRENILFGKDMR----QS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1159)
Q Consensus 663 yv~Q~pwi~~gTIreNIlfG~~~d----~~----~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARA 734 (1159)
||||+||+|++||+|||.||..++ ++ .|+++++.|+|.+++ ++.++++|.+|||||||||+||||
T Consensus 167 ~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l-------~~~~~~~~~~LSgGqkqRl~LARA 239 (329)
T PRK14257 167 MVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEV-------KDDLDKAGNALSGGQQQRLCIARA 239 (329)
T ss_pred EEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchh-------hhhhhCCcccCCHHHHHHHHHHHH
Confidence 999999999999999999875432 22 377888999886655 378899999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHHHHh
Q 001091 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 735 ly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
+|++|+|+||||||||||+++.++ ++++|+++.+++|+|+|||+++++.. ||+|++|++|+|++.|+++++..
T Consensus 240 l~~~p~IlLLDEPts~LD~~~~~~-i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~ 313 (329)
T PRK14257 240 IALEPEVLLMDEPTSALDPIATAK-IEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFI 313 (329)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999887 67789888889999999999999887 99999999999999999999876
No 48
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6.7e-44 Score=398.53 Aligned_cols=223 Identities=25% Similarity=0.356 Sum_probs=203.3
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.|+++|++++|++. ..++|+| ||+|++||+++|+|++|||||||+++|.|+++ .+|+| .++|
T Consensus 2 ~i~~~nls~~~~~~------~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I-~i~g~~i~~~~~~ 73 (275)
T cd03289 2 QMTVKDLTAKYTEG------GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDI-QIDGVSWNSVPLQ 73 (275)
T ss_pred eEEEEEEEEEeCCC------CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEE-EECCEEhhhCCHH
Confidence 48999999999753 3568999 99999999999999999999999999999998 79999 8877
Q ss_pred ----EEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 001091 660 ----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1159)
Q Consensus 660 ----~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAl 735 (1159)
.++||||+|++|++|++||+.+..++++++..++++.++|.+.+..+|+|++|.++|+|.+||||||||++||||+
T Consensus 74 ~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal 153 (275)
T cd03289 74 KWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV 153 (275)
T ss_pred HHhhhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999975445777889999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHHHhhcchHHH
Q 001091 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815 (1159)
Q Consensus 736 y~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~ 815 (1159)
+++|+|+||||||++||+++.+.+ ++.+....+++|+|+|||+++.+..||+|++|++|+|++.|+++++++ .++.|.
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l-~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~-~~~~~~ 231 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVI-RKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN-EKSHFK 231 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHH-HHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhh-CcHHHH
Confidence 999999999999999999997654 566776667899999999999998999999999999999999999998 777888
Q ss_pred HHHHHhh
Q 001091 816 RQMKAHR 822 (1159)
Q Consensus 816 ~l~~~~~ 822 (1159)
+++....
T Consensus 232 ~~~~~~~ 238 (275)
T cd03289 232 QAISPSD 238 (275)
T ss_pred HHHhhcc
Confidence 8876543
No 49
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-41 Score=346.46 Aligned_cols=199 Identities=30% Similarity=0.436 Sum_probs=173.1
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
-|+++|++.+|.. ..+|++ |++|++||.++|+|||||||||||++|.|+-++++|+| .++|
T Consensus 2 mi~i~~l~K~fg~--------~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I-~i~g~~~~~~~~~ 72 (240)
T COG1126 2 MIEIKNLSKSFGD--------KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI-TVDGEDVGDKKDI 72 (240)
T ss_pred eEEEEeeeEEeCC--------eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceE-EECCEeccchhhH
Confidence 4899999999974 468999 99999999999999999999999999999999999999 9988
Q ss_pred -----EEEEEecCCCCC-CCcHHHHHhcCC----CCC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHH
Q 001091 660 -----KKAYVPQSSWIQ-TGTIRENILFGK----DMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1159)
Q Consensus 660 -----~iayv~Q~pwi~-~gTIreNIlfG~----~~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQ 725 (1159)
++|+|.|+.-|| +.|+-|||..+. ..+ +++-.+.++..+|.+-.+..| ..|||||
T Consensus 73 ~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQ 141 (240)
T COG1126 73 LKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQ 141 (240)
T ss_pred HHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHH
Confidence 368999999887 579999999873 122 234456677777776666666 4799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeEEEecCh
Q 001091 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1159)
Q Consensus 726 KQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~ 803 (1159)
||||||||||.-+|+++|+|||||||||+....+.+ ++..+. .|.|.|+|||.+.|.+. ||+|+.|++|+|+++|++
T Consensus 142 qQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~-vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p 220 (240)
T COG1126 142 QQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPP 220 (240)
T ss_pred HHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHH-HHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCH
Confidence 999999999999999999999999999998887765 455544 58999999999999977 999999999999999999
Q ss_pred HHHHhh
Q 001091 804 EDLIAD 809 (1159)
Q Consensus 804 ~eL~~~ 809 (1159)
+++..+
T Consensus 221 ~~~f~~ 226 (240)
T COG1126 221 EEFFDN 226 (240)
T ss_pred HHHhcC
Confidence 999873
No 50
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.7e-40 Score=368.93 Aligned_cols=238 Identities=35% Similarity=0.608 Sum_probs=205.5
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHH
Q 001091 565 RIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSI 643 (1159)
Q Consensus 565 RI~~fL~~~e~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~l 643 (1159)
.+.+.|..+.+.+..... ......|+++|+++.+ .+++++ ||++++||+++|+|++|||||||+++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~--~~~~~~l~i~nls~~~----------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I 83 (282)
T cd03291 16 GFGELLEKAKQENNDRKH--SSDDNNLFFSNLCLVG----------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLI 83 (282)
T ss_pred HHHHHHhccccccccccc--CCCCCeEEEEEEEEec----------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 445555554432222222 2334679999999952 358999 999999999999999999999999999
Q ss_pred hCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCH
Q 001091 644 LGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1159)
Q Consensus 644 lGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSG 723 (1159)
.|+++|.+|+| .++|.++|++|+++++++|++|||.++...++.++.+.++++++.+.++.+|.+.+|.+++++.+|||
T Consensus 84 ~Gl~~p~~G~I-~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSg 162 (282)
T cd03291 84 LGELEPSEGKI-KHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSG 162 (282)
T ss_pred hCCCCCCCcEE-EECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCH
Confidence 99999999999 99999999999999999999999999876666677888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecCh
Q 001091 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1159)
Q Consensus 724 GQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~ 803 (1159)
|||||++||||+.++|+++||||||++||+.+.+.+.+.++..+.+++|+|++||+++.++.||+|++|++|++++.|+.
T Consensus 163 Gq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~ 242 (282)
T cd03291 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTF 242 (282)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999887776666555568999999999999989999999999999999999
Q ss_pred HHHHhhcchHHHH
Q 001091 804 EDLIADQNSELVR 816 (1159)
Q Consensus 804 ~eL~~~~~~~~~~ 816 (1159)
+++.+ ...++.+
T Consensus 243 ~~~~~-~~~~~~~ 254 (282)
T cd03291 243 SELQS-LRPDFSS 254 (282)
T ss_pred HHHHh-cchHHHH
Confidence 99886 4444443
No 51
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.5e-40 Score=354.66 Aligned_cols=200 Identities=54% Similarity=0.981 Sum_probs=184.3
Q ss_pred EEEeeeEEEeCCcccccCCC--cccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecC
Q 001091 591 IDIEAGEYAWDAREENFKKP--TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~--~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~ 667 (1159)
++++|++++|++. .. .+++++ |+++++||+++|+||+|||||||+++|+|+++|.+|+| .++|+++|++|+
T Consensus 1 l~~~~l~~~~~~~-----~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i-~~~g~i~~~~q~ 74 (204)
T cd03250 1 ISVEDASFTWDSG-----EQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSV-SVPGSIAYVSQE 74 (204)
T ss_pred CEEeEEEEecCCC-----CccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeE-EEcCEEEEEecC
Confidence 4789999999753 11 368999 99999999999999999999999999999999999999 999999999999
Q ss_pred CCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q 001091 668 SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1159)
Q Consensus 668 pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp 747 (1159)
|+++++|++|||.++.++++++.+++.+.+++.+.+..+|.|++|.+++++.+||||||||++||||++++|+++|||||
T Consensus 75 ~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP 154 (204)
T cd03250 75 PWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDP 154 (204)
T ss_pred chhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 99999999999999877777788889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEEEEEeCCe
Q 001091 748 FSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1159)
Q Consensus 748 ~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~Iivl~~G~ 796 (1159)
|++||++..+.+++.++.... +++|+|++||+++.++.||+|++|++|+
T Consensus 155 ~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 155 LSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred cccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999998888876665543 4799999999999988899999999985
No 52
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=9.7e-40 Score=363.66 Aligned_cols=224 Identities=28% Similarity=0.364 Sum_probs=199.5
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-------
Q 001091 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1159)
Q Consensus 588 ~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g------- 659 (1159)
.+.|+++|++++|+.. ..+++++ ||++++||+++|+|++|||||||+++|+|+++|.+|+| .++|
T Consensus 17 ~~~i~~~~l~~~~~~~------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~i~g~~i~~~~ 89 (257)
T cd03288 17 GGEIKIHDLCVRYENN------LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKI-VIDGIDISKLP 89 (257)
T ss_pred CceEEEEEEEEEeCCC------CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeE-EECCEEhhhCC
Confidence 3579999999999753 2468999 99999999999999999999999999999999999999 8766
Q ss_pred ------EEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHH
Q 001091 660 ------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1159)
Q Consensus 660 ------~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLAR 733 (1159)
.++||+|+|+++++|++||+......++++++++++..++.+.++.+|.|++|.+++.+.+||||||||++|||
T Consensus 90 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lar 169 (257)
T cd03288 90 LHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLAR 169 (257)
T ss_pred HHHHhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHH
Confidence 38999999999999999999876555566778888889999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHHHhhcchH
Q 001091 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSE 813 (1159)
Q Consensus 734 Aly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~ 813 (1159)
|++++|+++||||||++||+++.+.+ .+.+..+.+++|+|++||+++.++.||+|++|++|++++.|+++++.+..++.
T Consensus 170 al~~~p~llllDEPt~gLD~~~~~~l-~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~ 248 (257)
T cd03288 170 AFVRKSSILIMDEATASIDMATENIL-QKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGV 248 (257)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHH-HHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchH
Confidence 99999999999999999999987655 45666666789999999999999889999999999999999999998733455
Q ss_pred HHHHHH
Q 001091 814 LVRQMK 819 (1159)
Q Consensus 814 ~~~l~~ 819 (1159)
|.+++.
T Consensus 249 ~~~~~~ 254 (257)
T cd03288 249 FASLVR 254 (257)
T ss_pred HHHHHh
Confidence 666543
No 53
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=9.4e-40 Score=359.60 Aligned_cols=219 Identities=29% Similarity=0.435 Sum_probs=192.9
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|+++.|+.. ..+++++ |+++++||+++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 1 i~~~~l~~~~~~~------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (237)
T cd03252 1 ITFEHVRFRYKPD------GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRV-LVDGHDLALADPAW 73 (237)
T ss_pred CEEEEEEEecCCC------CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE-EECCeehHhcCHHH
Confidence 4789999999643 2568999 99999999999999999999999999999999999999 8876
Q ss_pred ---EEEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 001091 660 ---KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1159)
Q Consensus 660 ---~iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAl 735 (1159)
.++|++|++++++.|++|||.++.+ .+.++..+.++...+.+.++.+|.|.++..+.++.+||||||||++||||+
T Consensus 74 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 153 (237)
T cd03252 74 LRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARAL 153 (237)
T ss_pred HhhcEEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 3899999999999999999998754 344455566677778888899999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHHHhhcchHHH
Q 001091 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815 (1159)
Q Consensus 736 y~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~ 815 (1159)
+++|+++||||||++||+++.+.+.+ .+..+.+++|+|++||+++.+..||+|++|++|++++.|+.+++.+ ..+.|.
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~-~~~~~~ 231 (237)
T cd03252 154 IHNPRILIFDEATSALDYESEHAIMR-NMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA-ENGLYA 231 (237)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHh-ccChHH
Confidence 99999999999999999999876654 5666667899999999999998899999999999999999999987 555555
Q ss_pred HHH
Q 001091 816 RQM 818 (1159)
Q Consensus 816 ~l~ 818 (1159)
.+.
T Consensus 232 ~~~ 234 (237)
T cd03252 232 YLY 234 (237)
T ss_pred HHH
Confidence 543
No 54
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.8e-40 Score=347.25 Aligned_cols=188 Identities=33% Similarity=0.485 Sum_probs=163.2
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------E
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------K 660 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------~ 660 (1159)
.+++++++.+|+. ..+|+| ||+|++||+|+|+|||||||||||+.|.|+.+|++|+| .++| .
T Consensus 3 ~l~i~~v~~~f~~--------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V-~~~g~~v~~p~~~ 73 (248)
T COG1116 3 LLEIEGVSKSFGG--------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV-LLDGRPVTGPGPD 73 (248)
T ss_pred eEEEEeeEEEeCc--------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCcccCCCCCC
Confidence 4789999999974 478999 99999999999999999999999999999999999999 8877 5
Q ss_pred EEEEecCCCCC-CCcHHHHHhcCCCCC-------hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHH
Q 001091 661 KAYVPQSSWIQ-TGTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1159)
Q Consensus 661 iayv~Q~pwi~-~gTIreNIlfG~~~d-------~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLA 732 (1159)
++||+|++-++ --||+|||.||-+.. +++-++.++..+|...-+..| ..||||||||||||
T Consensus 74 ~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiA 142 (248)
T COG1116 74 IGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIA 142 (248)
T ss_pred EEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHH
Confidence 79999998765 489999999997642 357788889999987777666 47999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccc-ccccCEEEEEeC--CeEE
Q 001091 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEF-LDAADLVLVMKD--GKIE 798 (1159)
Q Consensus 733 RAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~-l~~aD~Iivl~~--G~I~ 798 (1159)
||+..+|+|+||||||||||+.|..++-++ +..+. .++|+++|||+++. +--+|+|++|.+ |+|.
T Consensus 143 RAL~~~P~lLLlDEPFgALDalTR~~lq~~-l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 143 RALATRPKLLLLDEPFGALDALTREELQDE-LLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HHHhcCCCEEEEcCCcchhhHHHHHHHHHH-HHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999999999998776544 44443 36999999999987 566999999998 5553
No 55
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-39 Score=340.96 Aligned_cols=205 Identities=29% Similarity=0.428 Sum_probs=175.8
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+|+|+++.|.+ ...++| ||+|++||+++++|||||||||+|+.|.++++|++|+| .++|
T Consensus 2 I~~~nvsk~y~~--------~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I-~i~g~~i~~~d~~~ 72 (309)
T COG1125 2 IEFENVSKRYGN--------KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI-LIDGEDISDLDPVE 72 (309)
T ss_pred ceeeeeehhcCC--------ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceE-EECCeecccCCHHH
Confidence 789999999974 467889 99999999999999999999999999999999999999 8887
Q ss_pred ---EEEEEecCCCCC-CCcHHHHHhcCC---CCCh----HHHHHHHHHhccch--HHHhccCCCCccccCCCCCCCHHHH
Q 001091 660 ---KKAYVPQSSWIQ-TGTIRENILFGK---DMRQ----SFYEEVLEGCALNQ--DIEMWADGDLSVVGERGINLSGGQK 726 (1159)
Q Consensus 660 ---~iayv~Q~pwi~-~gTIreNIlfG~---~~d~----~~y~~vl~ac~L~~--dl~~lp~Gd~T~IGe~G~~LSGGQK 726 (1159)
+||||-|+.-|| +.||.|||.+-- .+++ +|.++.++..+|++ ..+..| ..|||||+
T Consensus 73 LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQ 141 (309)
T COG1125 73 LRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQ 141 (309)
T ss_pred HHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchh
Confidence 589999997775 789999998753 3454 45667777778874 344555 47999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccc-ccccCEEEEEeCCeEEEecCh
Q 001091 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKY 803 (1159)
Q Consensus 727 QRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~-l~~aD~Iivl~~G~I~e~Gt~ 803 (1159)
|||.+|||+..+|+|+|+|||||||||-+.+++ |+-+..+- -+||+|+|||+++. ++-+|+|.+|++|+|++.|++
T Consensus 142 QRVGv~RALAadP~ilLMDEPFgALDpI~R~~l-Q~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P 220 (309)
T COG1125 142 QRVGVARALAADPPILLMDEPFGALDPITRKQL-QEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTP 220 (309)
T ss_pred hHHHHHHHHhcCCCeEeecCCccccChhhHHHH-HHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCH
Confidence 999999999999999999999999999998776 44454443 38999999999986 688999999999999999999
Q ss_pred HHHHhhcchHHHH
Q 001091 804 EDLIADQNSELVR 816 (1159)
Q Consensus 804 ~eL~~~~~~~~~~ 816 (1159)
+|+++++..+|-+
T Consensus 221 ~~il~~Pan~FV~ 233 (309)
T COG1125 221 DEILANPANDFVE 233 (309)
T ss_pred HHHHhCccHHHHH
Confidence 9999866666644
No 56
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-39 Score=351.60 Aligned_cols=210 Identities=29% Similarity=0.470 Sum_probs=190.5
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|++++|+.. .++++| ||++++|++++|+||+|||||||+++|.|+.+|.+|+| .++|
T Consensus 2 ~l~~~~l~~~~~~~-------~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 73 (229)
T cd03254 2 EIEFENVNFSYDEK-------KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI-LIDGIDIRDISRK 73 (229)
T ss_pred eEEEEEEEEecCCC-------CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE-EECCEeHHHcCHH
Confidence 48899999999632 468999 99999999999999999999999999999999999999 8876
Q ss_pred ----EEEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHH
Q 001091 660 ----KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1159)
Q Consensus 660 ----~iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARA 734 (1159)
.++|++|+++++++|++||+.++.+ ...++.++.++.+++.+.++.+|.|.++..+.+..+||||||||++||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~a 153 (229)
T cd03254 74 SLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARA 153 (229)
T ss_pred HHhhhEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHH
Confidence 3899999999999999999998864 34566777888889999999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHHHh
Q 001091 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 735 ly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
++++|+++||||||++||+.+.+.+. +.+..+.+++|+|++||+++.++.||+|++|++|++++.|+.+++.+
T Consensus 154 l~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 154 MLRDPKILILDEATSNIDTETEKLIQ-EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHH-HHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999987764 55666667899999999999998899999999999999999988765
No 57
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.8e-39 Score=351.64 Aligned_cols=216 Identities=32% Similarity=0.515 Sum_probs=191.4
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++++|+.. .+++++ |+++++|++++|+||+|||||||+++|.|+.+|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v-~~~g~~~~~~~~~~ 72 (236)
T cd03253 1 IEFENVTFAYDPG-------RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI-LIDGQDIREVTLDS 72 (236)
T ss_pred CEEEEEEEEeCCC-------CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE-EECCEEhhhCCHHH
Confidence 4689999999642 458999 99999999999999999999999999999999999999 8876
Q ss_pred ---EEEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 001091 660 ---KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1159)
Q Consensus 660 ---~iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAl 735 (1159)
.++|++|+|+++++|++||+.++.+ .+++...+.++.+++.+.++.+|.|.+|.++.+..+||||||||++||||+
T Consensus 73 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL 152 (236)
T cd03253 73 LRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAI 152 (236)
T ss_pred HHhhEEEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 2899999999999999999998754 344456677888899888999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHHHhhcchHHH
Q 001091 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815 (1159)
Q Consensus 736 y~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~ 815 (1159)
+++|+++||||||++||+++.+.+. +.+..+.+++|+|++||+.+.+..||++++|++|++++.|+.+++.+ ....+.
T Consensus 153 ~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~-~~~~~~ 230 (236)
T cd03253 153 LKNPPILLLDEATSALDTHTEREIQ-AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA-KGGLYA 230 (236)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHH-HHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh-cccHHH
Confidence 9999999999999999999987665 45666556899999999999998899999999999999999998876 444443
Q ss_pred H
Q 001091 816 R 816 (1159)
Q Consensus 816 ~ 816 (1159)
.
T Consensus 231 ~ 231 (236)
T cd03253 231 E 231 (236)
T ss_pred H
Confidence 3
No 58
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.7e-39 Score=351.64 Aligned_cols=210 Identities=31% Similarity=0.497 Sum_probs=190.2
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|++++|++. ..+++++ ||++++||+++|+||+|||||||+++|.|+++|++|+| .++|
T Consensus 1 i~~~~l~~~~~~~------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~ 73 (234)
T cd03251 1 VEFKNVTFRYPGD------GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI-LIDGHDVRDYTLAS 73 (234)
T ss_pred CEEEEEEEEeCCC------CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEE-EECCEEhhhCCHHH
Confidence 4789999999643 2468999 99999999999999999999999999999999999999 8876
Q ss_pred ---EEEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 001091 660 ---KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1159)
Q Consensus 660 ---~iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAl 735 (1159)
.++|++|+|++++.|++||+.++.+ ++++.+++.++.+.+.+.++.+|.|.++..+.+..+||||||||++||||+
T Consensus 74 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al 153 (234)
T cd03251 74 LRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARAL 153 (234)
T ss_pred HHhhEEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHH
Confidence 3899999999999999999998754 455667777888889999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHHHh
Q 001091 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 736 y~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
+++|+++||||||++||+.+.+.+ .+.+..+.+++|+|++||+++.++.||+|++|++|++++.|+.+++.+
T Consensus 154 ~~~p~lllLDEP~~~LD~~~~~~l-~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 154 LKDPPILILDEATSALDTESERLV-QAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred hcCCCEEEEeCccccCCHHHHHHH-HHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHH
Confidence 999999999999999999997766 556777667899999999999998899999999999999999999876
No 59
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.2e-38 Score=347.12 Aligned_cols=205 Identities=28% Similarity=0.402 Sum_probs=187.4
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|++++|+.. ..++++| ||++++|+.++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 2 ~l~~~~l~~~~~~~------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 74 (221)
T cd03244 2 DIEFKNVSLRYRPN------LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSI-LIDGVDISKIGLH 74 (221)
T ss_pred cEEEEEEEEecCCC------CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE-EECCEEhHhCCHH
Confidence 48899999999753 2468999 99999999999999999999999999999999999999 7766
Q ss_pred ----EEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 001091 660 ----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1159)
Q Consensus 660 ----~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAl 735 (1159)
.++|++|+|.++++|++|||.+....++++..+.++..++.+.+..+|.|++|..++.+.+||||||||++||||+
T Consensus 75 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral 154 (221)
T cd03244 75 DLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL 154 (221)
T ss_pred HHhhhEEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 4899999999999999999988776777778888899999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecC
Q 001091 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1159)
Q Consensus 736 y~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt 802 (1159)
+++|+++||||||++||+.+.+.+ .+.++.+.+++|+|++||+++.++.||+|++|++|++++.|+
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 155 LRKSKILVLDEATASVDPETDALI-QKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred hcCCCEEEEeCccccCCHHHHHHH-HHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 999999999999999999997765 456666666899999999999998999999999999998875
No 60
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.9e-38 Score=349.46 Aligned_cols=211 Identities=32% Similarity=0.477 Sum_probs=188.6
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|+++.|+.. ...+.+++ ||++++||.++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 1 l~i~~l~~~~~~~-----~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 74 (238)
T cd03249 1 IEFKNVSFRYPSR-----PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI-LLDGVDIRDLNLRW 74 (238)
T ss_pred CeEEEEEEecCCC-----CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEE-EECCEehhhcCHHH
Confidence 4689999999753 23468999 99999999999999999999999999999999999999 8876
Q ss_pred ---EEEEEecCCCCCCCcHHHHHhcCCCC-ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 001091 660 ---KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1159)
Q Consensus 660 ---~iayv~Q~pwi~~gTIreNIlfG~~~-d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAl 735 (1159)
.++|++|+|++++.|++|||.++.+. .+++.++.++.+++.+.++.+|.|.++..+....+||||||||++||||+
T Consensus 75 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al 154 (238)
T cd03249 75 LRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL 154 (238)
T ss_pred HHhhEEEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH
Confidence 38999999999999999999987543 44556677888888888899999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHHHh
Q 001091 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 736 y~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
+.+|+++||||||++||+++.+.+. +.++.+.+++|+|++||+++.++.||+|++|++|++++.|+.+++.+
T Consensus 155 ~~~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 155 LRNPKILLLDEATSALDAESEKLVQ-EALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHH-HHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh
Confidence 9999999999999999999987665 45655557899999999999988999999999999999999988876
No 61
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-39 Score=346.05 Aligned_cols=209 Identities=27% Similarity=0.371 Sum_probs=174.7
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|++..|... .......++| ||+|++||..+|+|+||+|||||+++|.++-.|++|+| .++|
T Consensus 2 I~l~~vsK~~~~~---~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v-~v~G~di~~l~~~~ 77 (339)
T COG1135 2 IELENVSKTFGQT---GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV-FVDGQDLTALSEAE 77 (339)
T ss_pred eEEEeeeeeeccC---CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE-EEcCEecccCChHH
Confidence 7899999999752 0123568999 99999999999999999999999999999999999999 9988
Q ss_pred ------EEEEEecCCCCCC-CcHHHHHhcCCCC----ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHH
Q 001091 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1159)
Q Consensus 660 ------~iayv~Q~pwi~~-gTIreNIlfG~~~----d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQR 728 (1159)
+|++++|++-+++ .|+.|||.|..+. .++..++|.+.+.+. .|++ .-+....+||||||||
T Consensus 78 Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelV----gL~d----k~~~yP~qLSGGQKQR 149 (339)
T COG1135 78 LRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELV----GLSD----KADRYPAQLSGGQKQR 149 (339)
T ss_pred HHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHc----CChh----hhccCchhcCcchhhH
Confidence 4899999999988 8999999997543 345566666665432 1111 1123457999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHH
Q 001091 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1159)
Q Consensus 729 IaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~e 805 (1159)
|+||||+..+|+|+|.|||||||||+|.++|.+ ++..+- -|-|+++|||.++.++. ||+|.||++|+|+|+|+-.|
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~-LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~ 228 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILE-LLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSE 228 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHH-HHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHH
Confidence 999999999999999999999999999999976 344332 38899999999999976 99999999999999999999
Q ss_pred HHhhcch
Q 001091 806 LIADQNS 812 (1159)
Q Consensus 806 L~~~~~~ 812 (1159)
+..++..
T Consensus 229 vF~~Pk~ 235 (339)
T COG1135 229 VFANPKH 235 (339)
T ss_pred hhcCcch
Confidence 9874433
No 62
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.7e-39 Score=358.31 Aligned_cols=202 Identities=31% Similarity=0.437 Sum_probs=176.5
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.|+++|++.+|.+. . ++++ |++|++||+++++|||||||||||++|.|+.+|++|+| .++|
T Consensus 3 ~i~l~~v~K~yg~~-------~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I-~i~g~~vt~l~P~ 73 (338)
T COG3839 3 ELELKNVRKSFGSF-------E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI-LIDGRDVTDLPPE 73 (338)
T ss_pred EEEEeeeEEEcCCc-------e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCCCChh
Confidence 58999999999753 2 8999 99999999999999999999999999999999999999 8887
Q ss_pred --EEEEEecCCCCC-CCcHHHHHhcCCCCC-------hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHH
Q 001091 660 --KKAYVPQSSWIQ-TGTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1159)
Q Consensus 660 --~iayv~Q~pwi~-~gTIreNIlfG~~~d-------~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRI 729 (1159)
.||+|+|+.-|+ +.||+|||.||.... ++|.++|.+..+|++-++..| ..|||||||||
T Consensus 74 ~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRV 142 (338)
T COG3839 74 KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRV 142 (338)
T ss_pred HCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHH
Confidence 489999998775 569999999997653 567888888888888887766 57999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCccc-ccccCEEEEEeCCeEEEecChHHH
Q 001091 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDL 806 (1159)
Q Consensus 730 aLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~-l~~aD~Iivl~~G~I~e~Gt~~eL 806 (1159)
|||||+.++|+++|||||+|+||++....+-.+ |+.+.+ +.|+|+|||+... ..-+|+|.||++|+|.+.|++.|+
T Consensus 143 AlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~e-i~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~el 221 (338)
T COG3839 143 ALARALVRKPKVFLLDEPLSNLDAKLRVLMRSE-IKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221 (338)
T ss_pred HHHHHHhcCCCEEEecCchhHhhHHHHHHHHHH-HHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHH
Confidence 999999999999999999999999997765444 444433 6899999998765 567999999999999999999999
Q ss_pred Hhhcch
Q 001091 807 IADQNS 812 (1159)
Q Consensus 807 ~~~~~~ 812 (1159)
.++...
T Consensus 222 y~~P~n 227 (338)
T COG3839 222 YERPAN 227 (338)
T ss_pred hhCccc
Confidence 874433
No 63
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=8e-39 Score=369.10 Aligned_cols=192 Identities=28% Similarity=0.373 Sum_probs=160.3
Q ss_pred cccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-----------------EEEEEecCCCCCC
Q 001091 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------------KKAYVPQSSWIQT 672 (1159)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-----------------~iayv~Q~pwi~~ 672 (1159)
.+.++| ||+|++||+++|+||+|||||||+++|.|+++|++|+| .++| .++||+|++++|+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I-~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI-FIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEE-EECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 467899 99999999999999999999999999999999999999 7766 4899999999997
Q ss_pred -CcHHHHHhcCCCC---C-hHHHHHH---HHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEE
Q 001091 673 -GTIRENILFGKDM---R-QSFYEEV---LEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (1159)
Q Consensus 673 -gTIreNIlfG~~~---d-~~~y~~v---l~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LL 744 (1159)
.||+|||.|+.++ + +++++++ ++..+|+.. .+....+|||||||||+||||++++|+|+||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~-----------~~~~p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEY-----------EHRYPDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchh-----------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5999999987543 2 2334444 444444332 4455668999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCcccc-cccCEEEEEeCCeEEEecChHHHHhhcchHH
Q 001091 745 DDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814 (1159)
Q Consensus 745 DDp~SALD~~t~~~if~~~i~g~-l~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~ 814 (1159)
||||||||+.+.+.+.+.+..-. ..++|+|+|||+++.+ +.||+|++|++|+|++.|+++|+.++...+|
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~ 225 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHH
Confidence 99999999999998876554322 2389999999999975 5699999999999999999999987333333
No 64
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=7.4e-38 Score=340.60 Aligned_cols=204 Identities=33% Similarity=0.512 Sum_probs=183.1
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|+++.|+.. ..++++| |+++++|++++|+||+|||||||+++|.|+.+|.+|+| .++|
T Consensus 2 ~l~~~~l~~~~~~~------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~ 74 (220)
T cd03245 2 RIEFRNVSFSYPNQ------EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV-LLDGTDIRQLDPA 74 (220)
T ss_pred eEEEEEEEEEcCCC------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeE-EECCEEhHHCCHH
Confidence 48899999999642 2468999 99999999999999999999999999999999999999 8876
Q ss_pred ----EEEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHH
Q 001091 660 ----KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1159)
Q Consensus 660 ----~iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARA 734 (1159)
.++|++|+|+++..|++||+.++.+ .++++.++.++.+++.+.++.+|.|.+|.+.+...+||||||||++||||
T Consensus 75 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~a 154 (220)
T cd03245 75 DLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA 154 (220)
T ss_pred HHHhhEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHH
Confidence 3899999999999999999988754 34557778888899998899999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEec
Q 001091 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 735 ly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~G 801 (1159)
+..+|+++||||||++||+.+.+.+. +.+..+.+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 155 l~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 155 LLNDPPILLLDEPTSAMDMNSEERLK-ERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHH-HHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999987665 4566665568999999999988889999999999998764
No 65
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.4e-38 Score=317.16 Aligned_cols=196 Identities=26% Similarity=0.405 Sum_probs=171.1
Q ss_pred EEEeeeEEEeCCcccccCCCcccccCCeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g----------- 659 (1159)
|.+++++|+|+.. .+.-++.|++||+|||+|||||||||||++|.|+..|.+|+| .++|
T Consensus 2 l~L~~V~~~y~~~---------~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i-~i~g~d~t~~~P~~R 71 (231)
T COG3840 2 LALDDVRFSYGHL---------PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI-LINGVDHTASPPAER 71 (231)
T ss_pred ccccceEEeeCcc---------eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceE-EEcCeecCcCCcccC
Confidence 5678899999753 122278999999999999999999999999999999999999 8887
Q ss_pred EEEEEecCCCCCC-CcHHHHHhcCCC-------CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHH
Q 001091 660 KKAYVPQSSWIQT-GTIRENILFGKD-------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1159)
Q Consensus 660 ~iayv~Q~pwi~~-gTIreNIlfG~~-------~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaL 731 (1159)
.++.+.|+.-+|. -||++||-+|.. .+.++.+.+....+|....+.||. .||||||||+||
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvAL 140 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVAL 140 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHH
Confidence 3799999999986 699999999953 356788888899999999999985 799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEeCCeEEEecChHHHHh
Q 001091 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 732 ARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
||++.++.+|+||||||||||+.-...... .+.++. ++.|+++|||+++-.. .+|+++++++|+|.++|+-+++.+
T Consensus 141 ARclvR~~PilLLDEPFsALdP~LR~eMl~-Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 141 ARCLVREQPILLLDEPFSALDPALRAEMLA-LVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred HHHHhccCCeEEecCchhhcCHHHHHHHHH-HHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 999999999999999999999998766543 344443 5789999999999864 599999999999999999999887
No 66
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.4e-37 Score=324.82 Aligned_cols=210 Identities=28% Similarity=0.438 Sum_probs=180.7
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-------
Q 001091 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1159)
Q Consensus 588 ~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g------- 659 (1159)
...|+++++++++.+ ..+++| ||+|++||.++|+|||||||||||++|+|+.+|++|+| .++|
T Consensus 6 ~~~I~vr~v~~~fG~--------~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI-~i~G~~i~~ls 76 (263)
T COG1127 6 EPLIEVRGVTKSFGD--------RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI-LIDGEDIPQLS 76 (263)
T ss_pred cceEEEeeeeeecCC--------EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeE-EEcCcchhccC
Confidence 457999999999964 478999 99999999999999999999999999999999999999 8877
Q ss_pred ---------EEEEEecCCCCCCC-cHHHHHhcC----CCCChHHHHH----HHHHhccchH-HHhccCCCCccccCCCCC
Q 001091 660 ---------KKAYVPQSSWIQTG-TIRENILFG----KDMRQSFYEE----VLEGCALNQD-IEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 ---------~iayv~Q~pwi~~g-TIreNIlfG----~~~d~~~y~~----vl~ac~L~~d-l~~lp~Gd~T~IGe~G~~ 720 (1159)
++|++.|+.-||+. ||+||+.|- ...+++..++ -+++++|..+ .+.+| ..
T Consensus 77 ~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sE 145 (263)
T COG1127 77 EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SE 145 (263)
T ss_pred HHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hh
Confidence 48999999999975 999999994 2345554443 3577888887 66776 47
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCccccc-ccCEEEEEeCCeE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~-~aD~Iivl~~G~I 797 (1159)
||||.+.|+|||||+..||+|+++|||||+|||.++. .|++.|+.+.+ |-|+|+|||+++.+. -||+|+++.||+|
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~-~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv 224 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAG-VIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKV 224 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHH-HHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEE
Confidence 9999999999999999999999999999999999976 56788876654 789999999999865 5899999999999
Q ss_pred EEecChHHHHhhcchHHHHHH
Q 001091 798 EQSGKYEDLIADQNSELVRQM 818 (1159)
Q Consensus 798 ~e~Gt~~eL~~~~~~~~~~l~ 818 (1159)
+..||++|+.+..+....+++
T Consensus 225 ~~~Gt~~el~~sd~P~v~qf~ 245 (263)
T COG1127 225 IAEGTPEELLASDDPWVRQFF 245 (263)
T ss_pred EEeCCHHHHHhCCCHHHHHHh
Confidence 999999999983344444444
No 67
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-37 Score=360.37 Aligned_cols=201 Identities=27% Similarity=0.405 Sum_probs=172.5
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|++++|+.+ .+.|+| ||++++||+++|+||+||||||||++|.|+.+|++|+| .++|
T Consensus 3 ~l~i~~l~~~~~~~-------~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I-~~~g~~i~~~~~~ 74 (356)
T PRK11650 3 GLKLQAVRKSYDGK-------TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI-WIGGRVVNELEPA 74 (356)
T ss_pred EEEEEeEEEEeCCC-------CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE-EECCEECCCCCHH
Confidence 38899999999422 468999 99999999999999999999999999999999999999 8887
Q ss_pred --EEEEEecCCCCC-CCcHHHHHhcCCCC---C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHH
Q 001091 660 --KKAYVPQSSWIQ-TGTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1159)
Q Consensus 660 --~iayv~Q~pwi~-~gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRI 729 (1159)
.++||+|++.+| +.|++|||.|+... + +++.+++++..+|.+..+..| .+|||||||||
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRv 143 (356)
T PRK11650 75 DRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRV 143 (356)
T ss_pred HCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHH
Confidence 389999999998 57999999998532 2 234566777777765554444 58999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccc-cccCEEEEEeCCeEEEecChHHH
Q 001091 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDL 806 (1159)
Q Consensus 730 aLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL 806 (1159)
+||||++++|+++|||||||+||+.+.+.+.+. ++.+.+ |.|+|+|||+.+.+ ..||+|++|++|+|++.|+++|+
T Consensus 144 alARAL~~~P~llLLDEP~s~LD~~~r~~l~~~-l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~ 222 (356)
T PRK11650 144 AMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLE-IQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEV 222 (356)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 999999999999999999999999998877654 555543 79999999999876 56999999999999999999999
Q ss_pred Hhhc
Q 001091 807 IADQ 810 (1159)
Q Consensus 807 ~~~~ 810 (1159)
.++.
T Consensus 223 ~~~p 226 (356)
T PRK11650 223 YEKP 226 (356)
T ss_pred HhCC
Confidence 8733
No 68
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-38 Score=323.33 Aligned_cols=203 Identities=24% Similarity=0.368 Sum_probs=176.2
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCC-----CcEEEECC---
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS-----GAAIKVHG--- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~-----G~i~~v~g--- 659 (1159)
..++++|+++.|.+ ...|++ |++|++++.+|++|||||||||||+++.+..+..+ |+| .++|
T Consensus 6 ~~~~~~~l~~yYg~--------~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v-~~~g~ni 76 (253)
T COG1117 6 PAIEVRDLNLYYGD--------KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEV-LLDGKNI 76 (253)
T ss_pred ceeEecceeEEECc--------hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEE-EECCeec
Confidence 46899999999974 468999 99999999999999999999999999999988776 677 6666
Q ss_pred ------------EEEEEecCCCCCCCcHHHHHhcCCCCC-------hHHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 ------------KKAYVPQSSWIQTGTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 ------------~iayv~Q~pwi~~gTIreNIlfG~~~d-------~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
++|.|.|.|--|..||.|||.||-... ++..++.++.++|-+.++. .+.+.+..
T Consensus 77 ~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~ 149 (253)
T COG1117 77 YDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALG 149 (253)
T ss_pred cCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccC
Confidence 489999999999999999999995321 2456777777787665432 13467888
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccc-cccCEEEEEeCCeEEE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQ 799 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e 799 (1159)
|||||+||++||||+.-+|+|+|||||+|||||-+..+| ++.|.++.++-|+|+|||+++-. +-+|+...+-+|+++|
T Consensus 150 LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE 228 (253)
T COG1117 150 LSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKI-EELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVE 228 (253)
T ss_pred CChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHH-HHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEE
Confidence 999999999999999999999999999999999998876 77888888889999999999875 5589999999999999
Q ss_pred ecChHHHHh
Q 001091 800 SGKYEDLIA 808 (1159)
Q Consensus 800 ~Gt~~eL~~ 808 (1159)
.|+-+++..
T Consensus 229 ~g~T~~iF~ 237 (253)
T COG1117 229 FGPTDKIFT 237 (253)
T ss_pred EcCHHhhhc
Confidence 999998876
No 69
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-38 Score=355.29 Aligned_cols=205 Identities=33% Similarity=0.448 Sum_probs=177.2
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
..++++|++.+|.+ ...++| ||+|++||++++.|||||||||+|++|.|+.+|++|+| .++|
T Consensus 4 ~~l~i~~v~k~yg~--------~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I-~l~G~~i~~lpp 74 (352)
T COG3842 4 PALEIRNVSKSFGD--------FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI-LLDGEDITDVPP 74 (352)
T ss_pred ceEEEEeeeeecCC--------eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCCCCh
Confidence 46999999999973 578999 99999999999999999999999999999999999999 9988
Q ss_pred ---EEEEEecCCCCC-CCcHHHHHhcCCCC----C-h---HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHH
Q 001091 660 ---KKAYVPQSSWIQ-TGTIRENILFGKDM----R-Q---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1159)
Q Consensus 660 ---~iayv~Q~pwi~-~gTIreNIlfG~~~----d-~---~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQ 727 (1159)
.|++|+|+.-|| +.||+|||.||... . + ++.+++++..+|.+.-+. +...|||||+|
T Consensus 75 ~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R-----------~p~qLSGGQqQ 143 (352)
T COG3842 75 EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADR-----------KPHQLSGGQQQ 143 (352)
T ss_pred hhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhh-----------ChhhhChHHHH
Confidence 489999997775 68999999999762 2 2 377888888888764444 44689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccc-ccccCEEEEEeCCeEEEecChH
Q 001091 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYE 804 (1159)
Q Consensus 728 RIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~-l~~aD~Iivl~~G~I~e~Gt~~ 804 (1159)
||||||||..+|+++|||||+||||.+..+++-.+ ++.+. .|.|.|+|||+-+. +..+|+|.||++|+|.+.|+++
T Consensus 144 RVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~E-lk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~ 222 (352)
T COG3842 144 RVALARALVPEPKVLLLDEPLSALDAKLREQMRKE-LKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPE 222 (352)
T ss_pred HHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHH-HHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHH
Confidence 99999999999999999999999999998877555 33333 28999999998865 7889999999999999999999
Q ss_pred HHHhhcchHH
Q 001091 805 DLIADQNSEL 814 (1159)
Q Consensus 805 eL~~~~~~~~ 814 (1159)
|+...+...|
T Consensus 223 eiY~~P~~~f 232 (352)
T COG3842 223 EIYERPATRF 232 (352)
T ss_pred HHhhCcchHH
Confidence 9998444444
No 70
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-37 Score=354.25 Aligned_cols=206 Identities=26% Similarity=0.437 Sum_probs=170.3
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-------
Q 001091 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1159)
Q Consensus 588 ~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g------- 659 (1159)
+..|+++|++|+|+... ....++|+| |++|++||+++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 19 ~~~l~~~nl~~~y~~~~---~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I-~i~g~~~~~~~ 94 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQ---ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTI-QVGDIYIGDKK 94 (320)
T ss_pred CceEEEEeEEEEeCCCC---cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE-EECCEEccccc
Confidence 34699999999997430 012468999 99999999999999999999999999999999999998 7753
Q ss_pred ----------------------EEEEEecCC--CCCCCcHHHHHhcCCC---CChH----HHHHHHHHhccchHHHhccC
Q 001091 660 ----------------------KKAYVPQSS--WIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWAD 708 (1159)
Q Consensus 660 ----------------------~iayv~Q~p--wi~~gTIreNIlfG~~---~d~~----~y~~vl~ac~L~~dl~~lp~ 708 (1159)
.++||+|+| ++++.||+|||.||.. .+++ +.++.++.++|.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------- 167 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD------- 167 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh-------
Confidence 279999998 8999999999999842 2222 2233334333321
Q ss_pred CCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccc-ccc
Q 001091 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAA 786 (1159)
Q Consensus 709 Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l-~~a 786 (1159)
...++++.+||||||||++||||+.++|+++|||||||+||+.+.+.+.+ .+..+. +|+|+|+|||+++.+ ..|
T Consensus 168 ---~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~-~L~~l~~~g~TiiivtHd~~~~~~~a 243 (320)
T PRK13631 168 ---SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQ-LILDAKANNKTVFVITHTMEHVLEVA 243 (320)
T ss_pred ---hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhC
Confidence 23467788999999999999999999999999999999999999887754 565543 589999999999987 569
Q ss_pred CEEEEEeCCeEEEecChHHHHh
Q 001091 787 DLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 787 D~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
|+|++|++|+|++.|+++++.+
T Consensus 244 dri~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 244 DEVIVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred CEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999876
No 71
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=3.6e-34 Score=339.21 Aligned_cols=438 Identities=18% Similarity=0.212 Sum_probs=307.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCC--ChH------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 001091 340 FGANRIGIRVRSALTVLIYKRSMAIKFAGP--SSG------IIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILY 410 (1159)
Q Consensus 340 ~~~~r~~~riR~~L~~~iy~K~L~ls~~~~--~~G------~i~nlms~D~~~i~~~~~~-~~~~w~~pl~i~ia~~lL~ 410 (1159)
+..+++..+.|.-|...+.+|-+.-....+ ..| ..=+++..|+..+.+.... ...+....++++.-..+||
T Consensus 108 ~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw 187 (604)
T COG4178 108 WLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILW 187 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999887653322 222 2335788888777664432 2333344444555556677
Q ss_pred HHhhhHH--------HHHHH--HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHH
Q 001091 411 KNLGAAP--------AFAAL--FSTIFVMVSN----TPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEF 476 (1159)
Q Consensus 411 ~~lg~~~--------~l~~l--~~~i~~~~~~----~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f 476 (1159)
...|.++ .+++. .++++..++. ..++|...+...+..+....--.....+-++...|-+|+-|+.-
T Consensus 188 ~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~E 267 (604)
T COG4178 188 SLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVE 267 (604)
T ss_pred HccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHH
Confidence 5444110 11111 1122222332 33444444443333333323233455778889999999999876
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 477 LKKLLRLREIERDSLKK----YLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPEL 552 (1159)
Q Consensus 477 ~~~i~~~R~~E~~~l~~----~~~~~~~~~~~~~~~~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~ 552 (1159)
++++++.-..=++..++ ...+..+.....++++++-.+ ..+-.+..++++-|.+..+-..|+.+...+..+-+.
T Consensus 268 r~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~l--i~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~ 345 (604)
T COG4178 268 RRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPIL--IAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDN 345 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHH--hccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665422111111111 111111111222222211111 112224678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccC--C-CCCCCCCCC------CCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeC
Q 001091 553 ISMIAQTKVSLYRIQEFIKEDN--Q-KKPITEPTS------KASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMK 622 (1159)
Q Consensus 553 i~~~~~a~vs~~RI~~fL~~~e--~-~~~~~~~~~------~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~ 622 (1159)
+..+.+=+++..|+.+|-+.-+ + ++.....+. +..+..|+++|++..=|+. .+.+++ |+++++
T Consensus 346 ~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~-------~~ll~~l~~~v~~ 418 (604)
T COG4178 346 YDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG-------QTLLSELNFEVRP 418 (604)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC-------CeeeccceeeeCC
Confidence 9999999999999999985432 1 111110000 1114679999999987754 578899 999999
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEEC-C-EEEEEecCCCCCCCcHHHHHhcCCC---CChHHHHHHHHHh
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH-G-KKAYVPQSSWIQTGTIRENILFGKD---MRQSFYEEVLEGC 697 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~-g-~iayv~Q~pwi~~gTIreNIlfG~~---~d~~~y~~vl~ac 697 (1159)
|+-+.|.|++|||||||+++|.|..|--+|+| ... + .+-|+||.|++..||+||-|.+-.+ ++++.+.++++.|
T Consensus 419 G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I-~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~v 497 (604)
T COG4178 419 GERLLITGESGAGKTSLLRALAGLWPWGSGRI-SMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKV 497 (604)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCccCCCce-ecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHc
Confidence 99999999999999999999999999999998 665 3 4899999999999999999998752 7899999999999
Q ss_pred ccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEc
Q 001091 698 ALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTT 777 (1159)
Q Consensus 698 ~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVT 777 (1159)
+|.+-.+.+.+-++ =..-||||||||++.||.++++|++++|||+|||||..++..+++ .+++.+.+.|+|-|.
T Consensus 498 gL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q-~l~~~lp~~tvISV~ 571 (604)
T COG4178 498 GLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQ-LLKEELPDATVISVG 571 (604)
T ss_pred CcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHH-HHHhhCCCCEEEEec
Confidence 99998888765443 456899999999999999999999999999999999999988766 577888999999999
Q ss_pred cCcccccccCEEEEEe
Q 001091 778 HQLEFLDAADLVLVMK 793 (1159)
Q Consensus 778 H~l~~l~~aD~Iivl~ 793 (1159)
||....+..++.+-++
T Consensus 572 Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 572 HRPTLWNFHSRQLELL 587 (604)
T ss_pred cchhhHHHHhhheeec
Confidence 9998888777766654
No 72
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=8e-38 Score=338.59 Aligned_cols=198 Identities=31% Similarity=0.459 Sum_probs=171.2
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|++|+|++ .++++| ||++++||+++|+||+||||||||++|.|.++|.+|+| .++|
T Consensus 2 ~L~~~~ls~~y~~--------~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V-~l~g~~i~~~~~k 72 (258)
T COG1120 2 MLEVENLSFGYGG--------KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV-LLDGKDIASLSPK 72 (258)
T ss_pred eeEEEEEEEEECC--------eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEE-EECCCchhhcCHH
Confidence 3789999999974 589999 99999999999999999999999999999999999999 9998
Q ss_pred ----EEEEEecCCC-CCCCcHHHHHhcCCC-C----------ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCH
Q 001091 660 ----KKAYVPQSSW-IQTGTIRENILFGKD-M----------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1159)
Q Consensus 660 ----~iayv~Q~pw-i~~gTIreNIlfG~~-~----------d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSG 723 (1159)
++|||||++- -+.-||+|=+.+|+- + |++..+++++.+++++.-+ ..-..|||
T Consensus 73 elAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~-----------r~~~~LSG 141 (258)
T COG1120 73 ELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD-----------RPVDELSG 141 (258)
T ss_pred HHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhc-----------CcccccCh
Confidence 5899999964 567799999999962 1 3344556678787765332 12347999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccc-ccccCEEEEEeCCeEEEe
Q 001091 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEF-LDAADLVLVMKDGKIEQS 800 (1159)
Q Consensus 724 GQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~-l~~aD~Iivl~~G~I~e~ 800 (1159)
|||||+.||||+.++|+|+|||||||+||.+..-++++- ++.+- +|+|+|+|+|+++. ++.||++++|++|+|+.+
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~l-l~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~ 220 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLEL-LRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQ 220 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEee
Confidence 999999999999999999999999999999998888764 44443 48999999999987 688999999999999999
Q ss_pred cChHHHHh
Q 001091 801 GKYEDLIA 808 (1159)
Q Consensus 801 Gt~~eL~~ 808 (1159)
|+++|.+.
T Consensus 221 G~p~evlT 228 (258)
T COG1120 221 GTPEEVLT 228 (258)
T ss_pred cCcchhcC
Confidence 99999886
No 73
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.9e-37 Score=337.00 Aligned_cols=197 Identities=40% Similarity=0.746 Sum_probs=178.0
Q ss_pred EEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-----------
Q 001091 592 DIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (1159)
Q Consensus 592 ~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g----------- 659 (1159)
.+.|+.|+|+.+ .+++++ ||++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 2 ~~~~~~~~~~~~-------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~~ 73 (218)
T cd03290 2 QVTNGYFSWGSG-------LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV-HWSNKNESEPSFEAT 73 (218)
T ss_pred eeeeeEEecCCC-------CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE-EECCccccccccccc
Confidence 568999999754 468999 99999999999999999999999999999999999998 6643
Q ss_pred ------EEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHH
Q 001091 660 ------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1159)
Q Consensus 660 ------~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLAR 733 (1159)
.++|++|+|.+++.|++|||.++.++++++.++++++++|.+.++.+|.|++|.++....+||||||||++|||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~lar 153 (218)
T cd03290 74 RSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVAR 153 (218)
T ss_pred chhhcceEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHH
Confidence 48999999999999999999998777777778999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHH-HHhhhc-CCcEEEEEccCcccccccCEEEEEeCCe
Q 001091 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQ-CLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1159)
Q Consensus 734 Aly~~a~I~LLDDp~SALD~~t~~~if~~-~i~g~l-~~kTvIlVTH~l~~l~~aD~Iivl~~G~ 796 (1159)
|++++|+++||||||++||+.+.+.+.+. .++.+. +++|+|++||+.+.++.||++++|++|+
T Consensus 154 al~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 154 ALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred HHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999999998877663 444433 3789999999999998999999999984
No 74
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-37 Score=333.51 Aligned_cols=198 Identities=33% Similarity=0.519 Sum_probs=169.8
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
..|+++|++|+|++. ++|+| ||++++|++++|+||+|+|||||+++|+|..+|.+|+| .+.|
T Consensus 3 ~~i~v~nl~v~y~~~--------~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i-~~~g~~~~~~~~ 73 (254)
T COG1121 3 PMIEVENLTVSYGNR--------PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI-KIFGKPVRKRRK 73 (254)
T ss_pred cEEEEeeeEEEECCE--------eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceE-EEcccccccccc
Confidence 359999999999742 69999 99999999999999999999999999999999999999 7754
Q ss_pred --EEEEEecC---CCCCCCcHHHHHhcCCCC-----------ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCH
Q 001091 660 --KKAYVPQS---SWIQTGTIRENILFGKDM-----------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1159)
Q Consensus 660 --~iayv~Q~---pwi~~gTIreNIlfG~~~-----------d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSG 723 (1159)
+||||||. .|=|..||+|=+..|... |.+..+++++..++. |+.. ..| ..|||
T Consensus 74 ~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~~------r~i----~~LSG 142 (254)
T COG1121 74 RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLRD------RQI----GELSG 142 (254)
T ss_pred CCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhhC------Ccc----cccCc
Confidence 59999995 488999999999998432 347788888888876 3332 223 46999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEccCcccc-cccCEEEEEeCCeEEEec
Q 001091 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 724 GQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~-~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~G 801 (1159)
||+|||-|||||.++||+++|||||++||+.+++.++ +.+..+.+ |+||++|||+++.+ ..+|+|+.|+ +++...|
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~-~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G 220 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIY-DLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASG 220 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEecc
Confidence 9999999999999999999999999999999988765 46666553 89999999999986 4599999996 5788899
Q ss_pred ChHHHHh
Q 001091 802 KYEDLIA 808 (1159)
Q Consensus 802 t~~eL~~ 808 (1159)
+.+|..+
T Consensus 221 ~~~~~~~ 227 (254)
T COG1121 221 PPEEVLT 227 (254)
T ss_pred ChhhccC
Confidence 9999876
No 75
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.5e-37 Score=328.58 Aligned_cols=193 Identities=32% Similarity=0.438 Sum_probs=160.3
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++..|.... ....+|++ ||+|++||+++|+|||||||||||+.|-|.-.|++|.+ .++|
T Consensus 2 i~~~~v~k~y~~~~----~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v-~i~g~d~~~l~~~~ 76 (226)
T COG1136 2 IELKNVSKIYGLGG----EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEV-LINGKDLTKLSEKE 76 (226)
T ss_pred cEEeeeEEEeccCC----cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE-EECCEEcCcCCHHH
Confidence 56889999887541 12578999 99999999999999999999999999999999999998 8887
Q ss_pred -------EEEEEecCCCC-CCCcHHHHHhc----CCCCC---hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHH
Q 001091 660 -------KKAYVPQSSWI-QTGTIRENILF----GKDMR---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1159)
Q Consensus 660 -------~iayv~Q~pwi-~~gTIreNIlf----G~~~d---~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGG 724 (1159)
+||||+|+..| .+-|++|||.+ ..... +++.++.++..+|.+... ......||||
T Consensus 77 ~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGG 146 (226)
T COG1136 77 LAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGG 146 (226)
T ss_pred HHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHH
Confidence 38999999765 67899999984 32222 345566666666665443 1234589999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh--cCCcEEEEEccCcccccccCEEEEEeCCeEEE
Q 001091 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL--LSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1159)
Q Consensus 725 QKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~--l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e 799 (1159)
||||||||||+..+|+|+|.||||++||.++++.+++- +..+ ..|+|+|+|||+......||+++.|+||++.+
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~l-l~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLEL-LRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999988764 4444 24899999999999999999999999999554
No 76
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.5e-38 Score=336.36 Aligned_cols=203 Identities=33% Similarity=0.465 Sum_probs=171.7
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.|.++|++..|+. .+.++| +++|+.||++|+.|||||||||||++|.|+..|++|.| .++|
T Consensus 2 ~i~i~~~~~~~~~--------~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I-~~~~~~l~D~~~~ 72 (345)
T COG1118 2 SIRINNVKKRFGA--------FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI-RLNGRVLFDVSNL 72 (345)
T ss_pred ceeehhhhhhccc--------ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceE-EECCEeccchhcc
Confidence 3677888888864 467889 99999999999999999999999999999999999999 8877
Q ss_pred -----EEEEEecCCCCC-CCcHHHHHhcCCCC---------ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHH
Q 001091 660 -----KKAYVPQSSWIQ-TGTIRENILFGKDM---------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1159)
Q Consensus 660 -----~iayv~Q~pwi~-~gTIreNIlfG~~~---------d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGG 724 (1159)
+||||.|+.-+| +.||.|||.||.+. .+.+.++.++.|+|+.-=+.- ...||||
T Consensus 73 ~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ry-----------P~QLSGG 141 (345)
T COG1118 73 AVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRY-----------PAQLSGG 141 (345)
T ss_pred chhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcC-----------chhcChH
Confidence 489999997665 78999999999732 245677888999887544433 3589999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccc-ccccCEEEEEeCCeEEEec
Q 001091 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEF-LDAADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 725 QKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~-l~~aD~Iivl~~G~I~e~G 801 (1159)
||||||||||+..+|+++||||||+|||+++.+.+ ++-+..+. -|.|+++|||+.+. ++.||+|++|++|+|.+.|
T Consensus 142 QrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~l-r~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg 220 (345)
T COG1118 142 QRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL-RRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVG 220 (345)
T ss_pred HHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHH-HHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeC
Confidence 99999999999999999999999999999997765 44444433 27899999999987 5779999999999999999
Q ss_pred ChHHHHhhcchH
Q 001091 802 KYEDLIADQNSE 813 (1159)
Q Consensus 802 t~~eL~~~~~~~ 813 (1159)
+++|....++..
T Consensus 221 ~p~ev~~~P~s~ 232 (345)
T COG1118 221 PPDEVYDHPASR 232 (345)
T ss_pred CHHHHhcCCCcc
Confidence 999998744433
No 77
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=3.4e-37 Score=353.79 Aligned_cols=201 Identities=25% Similarity=0.360 Sum_probs=169.2
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|++++|+... ...++|+| ||++++||.++|+||+|||||||+++|.|+.+|++|+| .++|
T Consensus 2 I~~~~lsk~y~~~~----~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I-~i~G~~i~~~~~~~ 76 (343)
T TIGR02314 2 IKLSNITKVFHQGT----KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSV-IVDGQDLTTLSNSE 76 (343)
T ss_pred EEEEEEEEEECCCC----cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEECCcCCHHH
Confidence 78999999996420 12468999 99999999999999999999999999999999999999 7765
Q ss_pred ------EEEEEecCCCCCC-CcHHHHHhcCCC---CCh----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHH
Q 001091 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1159)
Q Consensus 660 ------~iayv~Q~pwi~~-gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQ 725 (1159)
+|+|++|++.++. .|++|||.|+.. .+. ++..++++..+|.+..+ .....|||||
T Consensus 77 l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~-----------~~~~~LSgGq 145 (343)
T TIGR02314 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHD-----------SYPSNLSGGQ 145 (343)
T ss_pred HHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHH
Confidence 3899999999985 799999998642 222 23445556566543322 3456899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccccc-cCEEEEEeCCeEEEecC
Q 001091 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1159)
Q Consensus 726 KQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt 802 (1159)
||||+||||+..+|+++||||||||||+.+.+.+.+ .++.+.+ |+|+|+|||+++.++. ||+|++|++|+|++.|+
T Consensus 146 kQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~-lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~ 224 (343)
T TIGR02314 146 KQRVAIARALASNPKVLLCDEATSALDPATTQSILE-LLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGT 224 (343)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999999887765 5655543 7999999999999855 99999999999999999
Q ss_pred hHHHHh
Q 001091 803 YEDLIA 808 (1159)
Q Consensus 803 ~~eL~~ 808 (1159)
++++..
T Consensus 225 ~~~v~~ 230 (343)
T TIGR02314 225 VSEIFS 230 (343)
T ss_pred HHHHHc
Confidence 999976
No 78
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-37 Score=338.33 Aligned_cols=197 Identities=29% Similarity=0.400 Sum_probs=165.0
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|+++.|++ .++++| ||++++||+++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~~ 71 (235)
T cd03261 1 IELRGLTKSFGG--------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV-LIDGEDISGLSEAE 71 (235)
T ss_pred CeEEEEEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEccccChhh
Confidence 468999999963 368999 99999999999999999999999999999999999998 7765
Q ss_pred ------EEEEEecCCCCCCC-cHHHHHhcCCC----CCh----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHH
Q 001091 660 ------KKAYVPQSSWIQTG-TIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1159)
Q Consensus 660 ------~iayv~Q~pwi~~g-TIreNIlfG~~----~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGG 724 (1159)
.++|++|++.++.. |++||+.++.. .++ ++.+++++.++|.+.. .....+||||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG 140 (235)
T cd03261 72 LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGG 140 (235)
T ss_pred HHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHH
Confidence 37999999998875 99999988632 222 2344555655554332 2334589999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccc-cCEEEEEeCCeEEEec
Q 001091 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 725 QKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~G 801 (1159)
||||++||||+.++|+++||||||++||+++.+.+.+ .++.+. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 141 ~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g 219 (235)
T cd03261 141 MKKRVALARALALDPELLLYDEPTAGLDPIASGVIDD-LIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEG 219 (235)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHH-HHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEec
Confidence 9999999999999999999999999999999877654 566554 37999999999998764 9999999999999999
Q ss_pred ChHHHHh
Q 001091 802 KYEDLIA 808 (1159)
Q Consensus 802 t~~eL~~ 808 (1159)
+++++.+
T Consensus 220 ~~~~~~~ 226 (235)
T cd03261 220 TPEELRA 226 (235)
T ss_pred CHHHHcC
Confidence 9998865
No 79
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-37 Score=354.18 Aligned_cols=201 Identities=27% Similarity=0.365 Sum_probs=170.3
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.|+++|+++.|++ .+.++| |+++++||+++|+||+||||||||++|.|+.+|++|+| .++|
T Consensus 6 ~l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I-~~~g~~i~~~~~~ 76 (351)
T PRK11432 6 FVVLKNITKRFGS--------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI-FIDGEDVTHRSIQ 76 (351)
T ss_pred EEEEEeEEEEECC--------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE-EECCEECCCCCHH
Confidence 5899999999963 357999 99999999999999999999999999999999999999 8876
Q ss_pred --EEEEEecCCCCCC-CcHHHHHhcCCCC---C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHH
Q 001091 660 --KKAYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1159)
Q Consensus 660 --~iayv~Q~pwi~~-gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRI 729 (1159)
+++||+|++.+|. .|++|||.||... + +++.+++++..+|.... ......|||||||||
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~-----------~r~~~~LSgGq~QRV 145 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFE-----------DRYVDQISGGQQQRV 145 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHH
Confidence 4899999999985 6999999998532 2 23444555555554322 233568999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccc-cccCEEEEEeCCeEEEecChHHH
Q 001091 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDL 806 (1159)
Q Consensus 730 aLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL 806 (1159)
+||||++++|+++|||||||+||+.+.+.+.+ .++.+.+ ++|+|+|||+.+.+ ..||+|++|++|+|++.|+++++
T Consensus 146 aLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~-~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~ 224 (351)
T PRK11432 146 ALARALILKPKVLLFDEPLSNLDANLRRSMRE-KIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224 (351)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999887654 5666654 79999999999986 55999999999999999999999
Q ss_pred Hhhcc
Q 001091 807 IADQN 811 (1159)
Q Consensus 807 ~~~~~ 811 (1159)
.++..
T Consensus 225 ~~~p~ 229 (351)
T PRK11432 225 YRQPA 229 (351)
T ss_pred HhCCC
Confidence 87333
No 80
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.2e-36 Score=327.86 Aligned_cols=188 Identities=25% Similarity=0.401 Sum_probs=163.1
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
..++++|++++|+.. ..+.+++ |+++++|+.++|+|++|||||||+++|+|+++|.+|+| .++|
T Consensus 5 ~~l~~~~l~~~~~~~------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~ 77 (207)
T cd03369 5 GEIEVENLSVRYAPD------LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKI-EIDGIDISTIPL 77 (207)
T ss_pred CeEEEEEEEEEeCCC------CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE-EECCEEhHHCCH
Confidence 469999999999743 2468999 99999999999999999999999999999999999999 7775
Q ss_pred -----EEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHH
Q 001091 660 -----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1159)
Q Consensus 660 -----~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARA 734 (1159)
.++||+|+|.++++|++|||.+..++++++ +.+++. ++++..+||||||||++||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~---~~~~l~---------------~~~~~~~LS~G~~qrv~lara 139 (207)
T cd03369 78 EDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEE---IYGALR---------------VSEGGLNLSQGQRQLLCLARA 139 (207)
T ss_pred HHHHhhEEEEecCCcccCccHHHHhcccCCCCHHH---HHHHhh---------------ccCCCCcCCHHHHHHHHHHHH
Confidence 489999999999999999998765544333 333221 356788999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecC
Q 001091 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1159)
Q Consensus 735 ly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt 802 (1159)
++.+|+++||||||++||+.+.+.+. +.++.+.+++|+|++||+++.+..||++++|++|++.+.|+
T Consensus 140 l~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 140 LLKRPRVLVLDEATASIDYATDALIQ-KTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred HhhCCCEEEEeCCcccCCHHHHHHHH-HHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999999999977654 45666666899999999999988899999999999998876
No 81
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=4.5e-37 Score=336.09 Aligned_cols=197 Identities=27% Similarity=0.392 Sum_probs=165.2
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCc-----cCCCCcEEEECC-----
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI-----PRISGAAIKVHG----- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~-----~~~~G~i~~v~g----- 659 (1159)
|+++|++++|+. .++++| ||++++||+++|+||+|||||||+++|.|.+ +|.+|+| .++|
T Consensus 1 i~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~~~~ 71 (227)
T cd03260 1 IELRDLNVYYGD--------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEV-LLDGKDIYD 71 (227)
T ss_pred CEEEEEEEEcCC--------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEE-EECCEEhhh
Confidence 478999999963 368999 9999999999999999999999999999999 9999998 7765
Q ss_pred ----------EEEEEecCCCCCCCcHHHHHhcCCCC----C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCC
Q 001091 660 ----------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1159)
Q Consensus 660 ----------~iayv~Q~pwi~~gTIreNIlfG~~~----d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~L 721 (1159)
.++|++|++.+++.|++||+.++... + +++.+++++.+++.+.+...++ +.+|
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~L 142 (227)
T cd03260 72 LDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGL 142 (227)
T ss_pred cchHHHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccC
Confidence 37999999999999999999886421 1 2344566666666544433221 5789
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEeCCeEEEe
Q 001091 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQS 800 (1159)
Q Consensus 722 SGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~ 800 (1159)
|||||||++||||++++|+++||||||++||+.+.+.+. +.++.+.+++|+|++||+++.+. .||+|++|++|++++.
T Consensus 143 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 221 (227)
T cd03260 143 SGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIE-ELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEF 221 (227)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999987765 45666654589999999999875 5999999999999999
Q ss_pred cChHHH
Q 001091 801 GKYEDL 806 (1159)
Q Consensus 801 Gt~~eL 806 (1159)
|+.+++
T Consensus 222 g~~~~~ 227 (227)
T cd03260 222 GPTEQI 227 (227)
T ss_pred cCcccC
Confidence 987653
No 82
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-37 Score=332.73 Aligned_cols=199 Identities=32% Similarity=0.486 Sum_probs=176.7
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|++|+|++. .+.+++ |+++++|+.++|+|++|||||||++.+.|.++|.+|.| .++|
T Consensus 3 ~i~~~~l~~~y~~~-------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v-~~~g~~~~~~~~~ 74 (235)
T COG1122 3 MIEAENLSFRYPGR-------KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV-LVDGLDTSSEKSL 74 (235)
T ss_pred eEEEEEEEEEcCCC-------ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE-EECCeeccchhhH
Confidence 47899999999853 689999 99999999999999999999999999999999999999 7766
Q ss_pred -----EEEEEecCC--CCCCCcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHH
Q 001091 660 -----KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1159)
Q Consensus 660 -----~iayv~Q~p--wi~~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQ 725 (1159)
+++||.|+| .+|..||.|.|.||.+ .+ ++|.+++++.|++.+..+..| .+|||||
T Consensus 75 ~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGq 143 (235)
T COG1122 75 LELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQ 143 (235)
T ss_pred HHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcc
Confidence 389999999 8999999999999953 22 356788899999987755544 5899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccccc-cCEEEEEeCCeEEEecC
Q 001091 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1159)
Q Consensus 726 KQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt 802 (1159)
|||+|||.++..+|+++|||||||+||+...+.+.+ .+..+.+ ++|+|++||+++.+.. ||++++|++|+++.+|+
T Consensus 144 kqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~-~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~ 222 (235)
T COG1122 144 KQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLE-LLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGD 222 (235)
T ss_pred eeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHH-HHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCC
Confidence 999999999999999999999999999999888765 4555543 5899999999999866 99999999999999999
Q ss_pred hHHHHh
Q 001091 803 YEDLIA 808 (1159)
Q Consensus 803 ~~eL~~ 808 (1159)
++|+.+
T Consensus 223 p~~i~~ 228 (235)
T COG1122 223 PAEIFN 228 (235)
T ss_pred HHHHhh
Confidence 999887
No 83
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-36 Score=337.36 Aligned_cols=202 Identities=22% Similarity=0.351 Sum_probs=173.3
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc---CCCCcEEEECC------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP---RISGAAIKVHG------ 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~---~~~G~i~~v~g------ 659 (1159)
.|+++|+++.|+. .+.++| ||++++||.++|+||+|||||||+++|.|+++ |.+|+| .++|
T Consensus 2 ~~~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i-~~~g~~i~~~ 72 (246)
T PRK14269 2 IAKTTNLNLFYGK--------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLV-EIEGKDVKNQ 72 (246)
T ss_pred ceeeeeeEEEECC--------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEE-EECCEecccC
Confidence 4789999999963 368999 99999999999999999999999999999974 689998 7776
Q ss_pred -------EEEEEecCCCCCCCcHHHHHhcCCCC---------ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCH
Q 001091 660 -------KKAYVPQSSWIQTGTIRENILFGKDM---------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1159)
Q Consensus 660 -------~iayv~Q~pwi~~gTIreNIlfG~~~---------d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSG 723 (1159)
.++|++|+|.+++.|++|||.++... ++++.+++++.++|.+.++.+ ..+++.+|||
T Consensus 73 ~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~ 145 (246)
T PRK14269 73 DVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSG 145 (246)
T ss_pred CHHHHhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCH
Confidence 38999999999999999999876321 123456777888886655432 3456789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEeCCeEEEecC
Q 001091 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGK 802 (1159)
Q Consensus 724 GQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt 802 (1159)
|||||++||||++++|+++||||||++||+++.+.+ .+++..+.+++|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 146 G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l-~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 224 (246)
T PRK14269 146 GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVI-EELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGE 224 (246)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECC
Confidence 999999999999999999999999999999997765 456766667899999999999875 599999999999999999
Q ss_pred hHHHHh
Q 001091 803 YEDLIA 808 (1159)
Q Consensus 803 ~~eL~~ 808 (1159)
.+|+..
T Consensus 225 ~~~~~~ 230 (246)
T PRK14269 225 SKEFFE 230 (246)
T ss_pred HHHHHh
Confidence 999875
No 84
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-36 Score=342.58 Aligned_cols=201 Identities=28% Similarity=0.420 Sum_probs=171.8
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|++++|+.. ...+.|+| |++|++||.++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 4 ~l~~~~l~~~~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~ 77 (279)
T PRK13650 4 IIEVKNLTFKYKED-----QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI-IIDGDLLTEENVW 77 (279)
T ss_pred eEEEEeEEEEcCCC-----CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEECCcCcHH
Confidence 48999999999743 12458999 99999999999999999999999999999999999999 7876
Q ss_pred ----EEEEEecCCC--CCCCcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHH
Q 001091 660 ----KKAYVPQSSW--IQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1159)
Q Consensus 660 ----~iayv~Q~pw--i~~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQK 726 (1159)
+++||+|+|. ++..||+|||.|+.. .+ +++.+++++..+|.+..+.. ..+||||||
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~ 146 (279)
T PRK13650 78 DIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKERE-----------PARLSGGQK 146 (279)
T ss_pred HHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHH
Confidence 3799999984 677899999998742 22 24566777777776544433 368999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccccccCEEEEEeCCeEEEecChH
Q 001091 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1159)
Q Consensus 727 QRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~ 804 (1159)
||++||||++++|+++||||||++||+.+.+.+. +.++.+.+ |+|+|++||+++.+..||+|++|++|++++.|+.+
T Consensus 147 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~ 225 (279)
T PRK13650 147 QRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI-KTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPR 225 (279)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999877665 56666543 89999999999998889999999999999999999
Q ss_pred HHHh
Q 001091 805 DLIA 808 (1159)
Q Consensus 805 eL~~ 808 (1159)
++.+
T Consensus 226 ~~~~ 229 (279)
T PRK13650 226 ELFS 229 (279)
T ss_pred HHHc
Confidence 8876
No 85
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.7e-36 Score=335.84 Aligned_cols=201 Identities=26% Similarity=0.391 Sum_probs=169.8
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCC-----CCcEEEECC-----
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-----SGAAIKVHG----- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~-----~G~i~~v~g----- 659 (1159)
++++|++++|+. .++++| ||++++||+++|+|++|||||||+++|.|.++|. +|+| .++|
T Consensus 2 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i-~~~g~~~~~ 72 (247)
T TIGR00972 2 IEIENLNLFYGE--------KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKV-LFDGQDIYD 72 (247)
T ss_pred EEEEEEEEEECC--------eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEE-EECCEEccc
Confidence 789999999963 358999 9999999999999999999999999999999988 9998 7754
Q ss_pred ----------EEEEEecCCCCCCCcHHHHHhcCCCC----C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCC
Q 001091 660 ----------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1159)
Q Consensus 660 ----------~iayv~Q~pwi~~gTIreNIlfG~~~----d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~L 721 (1159)
.++|++|++++++.|++||+.++... + +++.+++++..+|.++++ ........+|
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~L 145 (247)
T TIGR00972 73 KKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGL 145 (247)
T ss_pred cccchHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccC
Confidence 38999999999999999999876321 1 134455566666654332 1234566799
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEeCCeEEEe
Q 001091 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQS 800 (1159)
Q Consensus 722 SGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~ 800 (1159)
|||||||++||||++++|+++||||||++||+++.+.+. ++++.+.+++|+|++||+++.+. .||+|++|++|++++.
T Consensus 146 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 224 (247)
T TIGR00972 146 SGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIE-ELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEY 224 (247)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999987664 56776666789999999999875 5999999999999999
Q ss_pred cChHHHHh
Q 001091 801 GKYEDLIA 808 (1159)
Q Consensus 801 Gt~~eL~~ 808 (1159)
|+.+++.+
T Consensus 225 ~~~~~~~~ 232 (247)
T TIGR00972 225 GPTEQIFT 232 (247)
T ss_pred CCHHHHHh
Confidence 99999875
No 86
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-36 Score=336.87 Aligned_cols=203 Identities=24% Similarity=0.362 Sum_probs=171.0
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc-----CCCCcEEEECC---
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~-----~~~G~i~~v~g--- 659 (1159)
..|+++|++++|++ .+++++ |+++++||+++|+||+|||||||+++|.|+++ |++|+| .++|
T Consensus 5 ~~l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 75 (253)
T PRK14242 5 PKMEARGLSFFYGD--------FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEI-LLDGENI 75 (253)
T ss_pred cEEEEeeeEEEECC--------eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEE-EECCEEc
Confidence 46999999999963 358999 99999999999999999999999999999864 589998 7755
Q ss_pred ------------EEEEEecCCCCCCCcHHHHHhcCCC---C-C----hHHHHHHHHHhccchHHHhccCCCCccccCCCC
Q 001091 660 ------------KKAYVPQSSWIQTGTIRENILFGKD---M-R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1159)
Q Consensus 660 ------------~iayv~Q~pwi~~gTIreNIlfG~~---~-d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~ 719 (1159)
.++|++|++.+++.|++|||.++.. . + +++.++.++.+++.+.+. +..+....
T Consensus 76 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 148 (253)
T PRK14242 76 YDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESAL 148 (253)
T ss_pred cccccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcc
Confidence 3899999999999999999998632 1 1 234555666666654332 23456678
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEeCCeEE
Q 001091 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1159)
Q Consensus 720 ~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~ 798 (1159)
+||||||||++||||++.+|+++||||||++||+++.+.+. +.++.+.+++|+|++||+++.+. .||+|++|++|+|+
T Consensus 149 ~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~ 227 (253)
T PRK14242 149 GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIE-ELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLI 227 (253)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999977664 56766666899999999999885 59999999999999
Q ss_pred EecChHHHHh
Q 001091 799 QSGKYEDLIA 808 (1159)
Q Consensus 799 e~Gt~~eL~~ 808 (1159)
+.|+++++.+
T Consensus 228 ~~g~~~~~~~ 237 (253)
T PRK14242 228 EVGPTEQIFT 237 (253)
T ss_pred EeCCHHHHHc
Confidence 9999999875
No 87
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-36 Score=343.47 Aligned_cols=205 Identities=25% Similarity=0.379 Sum_probs=170.4
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.|+++|+++.|+.... ...++++| ||+|++||+++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 2 ~l~~~~l~~~y~~~~~---~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 77 (287)
T PRK13637 2 SIKIENLTHIYMEGTP---FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI-IIDGVDITDKKVK 77 (287)
T ss_pred EEEEEEEEEECCCCCc---cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE-EECCEECCCcCcc
Confidence 3789999999974300 01468999 99999999999999999999999999999999999998 7765
Q ss_pred ------EEEEEecCC--CCCCCcHHHHHhcCCC---CCh----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHH
Q 001091 660 ------KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1159)
Q Consensus 660 ------~iayv~Q~p--wi~~gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGG 724 (1159)
.++||+|+| .+++.|++|||.|+.. .++ ++.+++++.++|.. .+........||||
T Consensus 78 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgG 148 (287)
T PRK13637 78 LSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGG 148 (287)
T ss_pred HHHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHH
Confidence 379999998 6889999999998742 222 24456666666641 11234556799999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCccccc-ccCEEEEEeCCeEEEec
Q 001091 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 725 QKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~G 801 (1159)
||||++||||+..+|+++||||||++||+.+.+.+. ++++.+.+ |+|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 149 q~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g 227 (287)
T PRK13637 149 QKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEIL-NKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQG 227 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999987765 45666543 799999999999874 69999999999999999
Q ss_pred ChHHHHh
Q 001091 802 KYEDLIA 808 (1159)
Q Consensus 802 t~~eL~~ 808 (1159)
+.+++.+
T Consensus 228 ~~~~~~~ 234 (287)
T PRK13637 228 TPREVFK 234 (287)
T ss_pred CHHHHHh
Confidence 9999875
No 88
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2.1e-36 Score=330.64 Aligned_cols=203 Identities=30% Similarity=0.449 Sum_probs=175.8
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-------
Q 001091 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1159)
Q Consensus 588 ~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g------- 659 (1159)
.+.++++|++++|++. ...+++++ |+++++|++++|+||+|||||||+++|.|+.+|.+|+| .++|
T Consensus 9 ~~~l~~~~l~~~~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~ 82 (226)
T cd03248 9 KGIVKFQNVTFAYPTR-----PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV-LLDGKPISQYE 82 (226)
T ss_pred CceEEEEEEEEEeCCC-----CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEE-EECCCchHHcC
Confidence 3569999999999753 22468999 99999999999999999999999999999999999998 7776
Q ss_pred ------EEEEEecCCCCCCCcHHHHHhcCCCC-ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHH
Q 001091 660 ------KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1159)
Q Consensus 660 ------~iayv~Q~pwi~~gTIreNIlfG~~~-d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLA 732 (1159)
.++|++|+|.++++|++||+.++... +...+.+..+...+.+.++.+|.|.++...++..+||||||||++||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~la 162 (226)
T cd03248 83 HKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIA 162 (226)
T ss_pred HHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHH
Confidence 38999999999999999999987542 22233334444566778899998999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeE
Q 001091 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1159)
Q Consensus 733 RAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I 797 (1159)
||++++|+++||||||++||+++.+.+. +.+..+.+++|+|++||+++.+..||+|++|++|++
T Consensus 163 ral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 163 RALIRNPQVLILDEATSALDAESEQQVQ-QALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999987664 456666667999999999999988999999999975
No 89
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.4e-36 Score=351.09 Aligned_cols=204 Identities=30% Similarity=0.391 Sum_probs=172.7
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|++++|++ ...++| ||++++||+++|+||+||||||||++|.|+.+|++|+| .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I-~i~g~~~~~~~~~ 74 (353)
T TIGR03265 4 YLSIDNIRKRFGA--------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTI-YQGGRDITRLPPQ 74 (353)
T ss_pred EEEEEEEEEEeCC--------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEE-EECCEECCCCCHH
Confidence 4899999999963 357999 99999999999999999999999999999999999999 8877
Q ss_pred --EEEEEecCCCCC-CCcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHH
Q 001091 660 --KKAYVPQSSWIQ-TGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1159)
Q Consensus 660 --~iayv~Q~pwi~-~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRI 729 (1159)
.++||+|++-+| +.|++|||.|+.. .+ +++.+++++..+|.+..+ .+..+|||||||||
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRv 143 (353)
T TIGR03265 75 KRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER-----------KYPGQLSGGQQQRV 143 (353)
T ss_pred HCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhh-----------CChhhCCHHHHHHH
Confidence 389999999998 4799999999843 22 235556666666654333 45568999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccc-cccCEEEEEeCCeEEEecChHHH
Q 001091 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDL 806 (1159)
Q Consensus 730 aLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL 806 (1159)
+||||+.++|+++|||||||+||+++.+++.+ .++.+.+ +.|+|+|||+.+.+ ..||+|++|++|+|++.|+++|+
T Consensus 144 aLARaL~~~P~llLLDEP~s~LD~~~r~~l~~-~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~ 222 (353)
T TIGR03265 144 ALARALATSPGLLLLDEPLSALDARVREHLRT-EIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEI 222 (353)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999877654 4555543 78999999999986 56999999999999999999999
Q ss_pred HhhcchHH
Q 001091 807 IADQNSEL 814 (1159)
Q Consensus 807 ~~~~~~~~ 814 (1159)
.++....|
T Consensus 223 ~~~p~~~~ 230 (353)
T TIGR03265 223 YRHPATPF 230 (353)
T ss_pred HhCCCCHH
Confidence 87433344
No 90
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-36 Score=342.86 Aligned_cols=203 Identities=26% Similarity=0.411 Sum_probs=170.9
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|++|+|+.... ...++++| ||+|++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 2 i~~~~v~~~y~~~~~---~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~~ 77 (288)
T PRK13643 2 IKFEKVNYTYQPNSP---FASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKV-TVGDIVVSSTSKQK 77 (288)
T ss_pred EEEEEEEEEeCCCCc---ccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEE-EECCEECccccccc
Confidence 789999999974300 01368999 99999999999999999999999999999999999998 7776
Q ss_pred -------EEEEEecCC--CCCCCcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCH
Q 001091 660 -------KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1159)
Q Consensus 660 -------~iayv~Q~p--wi~~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSG 723 (1159)
.++||+|+| .+++.|+.|||.|+.. .+ +++++++++..+|.+++. .....+|||
T Consensus 78 ~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSg 147 (288)
T PRK13643 78 EIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFW----------EKSPFELSG 147 (288)
T ss_pred cHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhc----------cCCcccCCH
Confidence 279999998 7899999999999853 22 235666677767653332 245578999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeCCeEEEec
Q 001091 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 724 GQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~G 801 (1159)
|||||++||||++.+|+++||||||++||+.+.+.+.+ .+..+. +|+|+|++||+++.+. .||+|++|++|++++.|
T Consensus 148 GqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~-~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g 226 (288)
T PRK13643 148 GQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQ-LFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCG 226 (288)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999877654 565553 4899999999999875 59999999999999999
Q ss_pred ChHHHHh
Q 001091 802 KYEDLIA 808 (1159)
Q Consensus 802 t~~eL~~ 808 (1159)
+++++..
T Consensus 227 ~~~~~~~ 233 (288)
T PRK13643 227 TPSDVFQ 233 (288)
T ss_pred CHHHHHc
Confidence 9999875
No 91
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-36 Score=333.09 Aligned_cols=197 Identities=32% Similarity=0.429 Sum_probs=165.3
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|+++.|++ .+++++ |+++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 3 l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (239)
T cd03296 3 IEVRNVSKRFGD--------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI-LFGGEDATDVPVQE 73 (239)
T ss_pred EEEEeEEEEECC--------EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCcCCccc
Confidence 789999999963 368999 99999999999999999999999999999999999998 7765
Q ss_pred -EEEEEecCCCCCC-CcHHHHHhcCCCC-------Ch----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHH
Q 001091 660 -KKAYVPQSSWIQT-GTIRENILFGKDM-------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1159)
Q Consensus 660 -~iayv~Q~pwi~~-gTIreNIlfG~~~-------d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQK 726 (1159)
.++|++|+|.++. .|++|||.++... +. ++.++.++..+|.+. ......+||||||
T Consensus 74 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~ 142 (239)
T cd03296 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWL-----------ADRYPAQLSGGQR 142 (239)
T ss_pred cceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhh-----------hhcChhhCCHHHH
Confidence 3899999998885 6999999986432 11 223444555554322 2344568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCccccc-ccCEEEEEeCCeEEEecCh
Q 001091 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803 (1159)
Q Consensus 727 QRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~ 803 (1159)
||++||||+.++|+++||||||++||+++.+.+. +.+..+.+ ++|+|++||+++.+. .||+|++|++|++++.|+.
T Consensus 143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 221 (239)
T cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELR-RWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTP 221 (239)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCH
Confidence 9999999999999999999999999999977665 46666543 789999999999865 5999999999999999999
Q ss_pred HHHHh
Q 001091 804 EDLIA 808 (1159)
Q Consensus 804 ~eL~~ 808 (1159)
+++.+
T Consensus 222 ~~~~~ 226 (239)
T cd03296 222 DEVYD 226 (239)
T ss_pred HHHhc
Confidence 98865
No 92
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2e-36 Score=351.42 Aligned_cols=201 Identities=28% Similarity=0.380 Sum_probs=172.5
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE-------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~------- 660 (1159)
..++++|++++|++ .+.+++ ||++++||+++|+||+||||||||++|.|+.+|.+|+| .++|.
T Consensus 13 ~~L~l~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I-~~~g~~i~~~~~ 83 (375)
T PRK09452 13 PLVELRGISKSFDG--------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI-MLDGQDITHVPA 83 (375)
T ss_pred ceEEEEEEEEEECC--------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCCCCH
Confidence 35899999999963 357999 99999999999999999999999999999999999999 88773
Q ss_pred ----EEEEecCCCCC-CCcHHHHHhcCCCC---C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHH
Q 001091 661 ----KAYVPQSSWIQ-TGTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1159)
Q Consensus 661 ----iayv~Q~pwi~-~gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQR 728 (1159)
++||+|++.+| +.||+|||.||... + +++.+++++..+|.+.++..| .+||||||||
T Consensus 84 ~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QR 152 (375)
T PRK09452 84 ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQR 152 (375)
T ss_pred HHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHH
Confidence 89999999888 55999999998532 2 234566677777766555544 5899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccc-cccCEEEEEeCCeEEEecChHH
Q 001091 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYED 805 (1159)
Q Consensus 729 IaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~e 805 (1159)
|+||||++++|+++|||||||+||+++.+.+. +.++.+.+ |+|+|+|||+.+.+ ..||+|++|++|+|++.|++++
T Consensus 153 VaLARaL~~~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~ 231 (375)
T PRK09452 153 VAIARAVVNKPKVLLLDESLSALDYKLRKQMQ-NELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE 231 (375)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999977664 45666553 79999999999985 5699999999999999999999
Q ss_pred HHhhc
Q 001091 806 LIADQ 810 (1159)
Q Consensus 806 L~~~~ 810 (1159)
+.++.
T Consensus 232 i~~~p 236 (375)
T PRK09452 232 IYEEP 236 (375)
T ss_pred HHhCc
Confidence 98733
No 93
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-36 Score=342.13 Aligned_cols=203 Identities=26% Similarity=0.380 Sum_probs=171.1
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++++|+.... ...++|+| |++|++||.++|+||+|||||||+++|.|+++|++|+| .++|
T Consensus 3 l~~~~l~~~y~~~~~---~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~~ 78 (290)
T PRK13634 3 ITFQKVEHRYQYKTP---FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTV-TIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEECCCCc---ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE-EECCEECccccccc
Confidence 789999999974300 11468999 99999999999999999999999999999999999999 7776
Q ss_pred -------EEEEEecCC--CCCCCcHHHHHhcCCC---CCh----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCH
Q 001091 660 -------KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1159)
Q Consensus 660 -------~iayv~Q~p--wi~~gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSG 723 (1159)
.++||+|+| .+++.|++|||.|+.. .+. ++.+++++.++|.+++. .....+|||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSg 148 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSG 148 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCH
Confidence 379999998 6888999999998742 222 35667777777764432 234568999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEeCCeEEEe
Q 001091 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQS 800 (1159)
Q Consensus 724 GQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~ 800 (1159)
|||||++||||+..+|+++||||||++||+.+.+.+.+ .++.+. .|+|+|++||+++.+. .||+|++|++|++++.
T Consensus 149 Gq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~-~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~ 227 (290)
T PRK13634 149 GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMME-MFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQ 227 (290)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999877654 566654 3899999999999875 5999999999999999
Q ss_pred cChHHHHh
Q 001091 801 GKYEDLIA 808 (1159)
Q Consensus 801 Gt~~eL~~ 808 (1159)
|+.+++.+
T Consensus 228 g~~~~~~~ 235 (290)
T PRK13634 228 GTPREIFA 235 (290)
T ss_pred CCHHHHhc
Confidence 99999876
No 94
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-36 Score=334.74 Aligned_cols=203 Identities=26% Similarity=0.386 Sum_probs=169.5
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC-----CCCcEEEECC---
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~-----~~G~i~~v~g--- 659 (1159)
..++++|++++|++ .++++| ||++++||+++|+|++|||||||+++|.|+++| .+|+| .++|
T Consensus 6 ~~l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 76 (254)
T PRK14273 6 AIIETENLNLFYTD--------FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNV-IYEGKNI 76 (254)
T ss_pred ceEEEeeeEEEeCC--------ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEE-EECCEec
Confidence 36999999999963 358999 999999999999999999999999999999987 48998 6654
Q ss_pred ------------EEEEEecCCCCCCCcHHHHHhcCCCC----C----hHHHHHHHHHhccchHHHhccCCCCccccCCCC
Q 001091 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1159)
Q Consensus 660 ------------~iayv~Q~pwi~~gTIreNIlfG~~~----d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~ 719 (1159)
.++|++|++.+++.|++|||.|+... + +++.+++++.+++.+.++ +. ...+..
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~----~~~~~~ 149 (254)
T PRK14273 77 YSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---DK----LNTNAL 149 (254)
T ss_pred ccccccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH---HH----HhCCcc
Confidence 38999999999999999999987421 2 123445555555543221 22 234678
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEeCCeEE
Q 001091 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1159)
Q Consensus 720 ~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~ 798 (1159)
+||||||||++||||++++|+++||||||++||+++.+.+. +.++.+.+++|+|++||+++.+. .||+|++|++|+++
T Consensus 150 ~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 228 (254)
T PRK14273 150 SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIE-ELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIE 228 (254)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999987765 46766666899999999999875 49999999999999
Q ss_pred EecChHHHHh
Q 001091 799 QSGKYEDLIA 808 (1159)
Q Consensus 799 e~Gt~~eL~~ 808 (1159)
+.|+++++.+
T Consensus 229 ~~g~~~~~~~ 238 (254)
T PRK14273 229 EESSTDELFF 238 (254)
T ss_pred EeCCHHHHHh
Confidence 9999999875
No 95
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-36 Score=339.82 Aligned_cols=198 Identities=29% Similarity=0.420 Sum_probs=169.9
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|++++|+.. .++++| |+++++||.++|+|++|||||||+++|.|.++|++|+| .++|
T Consensus 4 ~l~~~~l~~~~~~~-------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 75 (274)
T PRK13647 4 IIEVEDLHFRYKDG-------TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV-KVMGREVNAENEK 75 (274)
T ss_pred eEEEEEEEEEeCCC-------CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE-EECCEECCCCCHH
Confidence 48999999999632 468999 99999999999999999999999999999999999999 8876
Q ss_pred ----EEEEEecCC--CCCCCcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHH
Q 001091 660 ----KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1159)
Q Consensus 660 ----~iayv~Q~p--wi~~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQK 726 (1159)
.++|++|+| .+++.|++|||.|+.. .+ +++++++++.++|.+..+..| ..||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~ 144 (274)
T PRK13647 76 WVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQK 144 (274)
T ss_pred HHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHH
Confidence 389999998 6889999999998743 22 245677777778765544443 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccc-cccCEEEEEeCCeEEEecChH
Q 001091 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYE 804 (1159)
Q Consensus 727 QRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~ 804 (1159)
||++||||+.++|+++||||||++||+.+.+.+. +.++.+. +|+|+|++||+++.+ +.||+|++|++|++++.|+.+
T Consensus 145 qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 223 (274)
T PRK13647 145 KRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLM-EILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKS 223 (274)
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999987765 4565553 489999999999998 459999999999999999987
Q ss_pred HHH
Q 001091 805 DLI 807 (1159)
Q Consensus 805 eL~ 807 (1159)
++.
T Consensus 224 ~~~ 226 (274)
T PRK13647 224 LLT 226 (274)
T ss_pred Hhc
Confidence 643
No 96
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-36 Score=351.40 Aligned_cols=198 Identities=27% Similarity=0.377 Sum_probs=169.6
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|++++|++ ..+++| ||++++|++++|+||+|||||||+++|.|+++|++|+| .++|
T Consensus 3 ~l~i~~l~~~~~~--------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I-~~~g~~i~~~~~~ 73 (369)
T PRK11000 3 SVTLRNVTKAYGD--------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDL-FIGEKRMNDVPPA 73 (369)
T ss_pred EEEEEEEEEEeCC--------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCCCCHh
Confidence 3889999999963 358999 99999999999999999999999999999999999999 8876
Q ss_pred --EEEEEecCCCCCC-CcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHH
Q 001091 660 --KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1159)
Q Consensus 660 --~iayv~Q~pwi~~-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRI 729 (1159)
.++||+|++.+|. .|++|||.|+.. .+ +++.+++++.++|.+..+. ...+|||||||||
T Consensus 74 ~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~-----------~~~~LSgGq~QRv 142 (369)
T PRK11000 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDR-----------KPKALSGGQRQRV 142 (369)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcC-----------ChhhCCHHHHHHH
Confidence 3899999999885 599999998743 22 2355667777777544433 3358999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCccccc-ccCEEEEEeCCeEEEecChHHH
Q 001091 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDL 806 (1159)
Q Consensus 730 aLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL 806 (1159)
+||||+.++|+++|||||||+||+++.+.+.+ .++.+.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++++
T Consensus 143 aLAraL~~~P~lLLLDEPts~LD~~~~~~l~~-~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i 221 (369)
T PRK11000 143 AIGRTLVAEPSVFLLDEPLSNLDAALRVQMRI-EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221 (369)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999877655 4555543 799999999999865 5999999999999999999999
Q ss_pred Hh
Q 001091 807 IA 808 (1159)
Q Consensus 807 ~~ 808 (1159)
..
T Consensus 222 ~~ 223 (369)
T PRK11000 222 YH 223 (369)
T ss_pred Hh
Confidence 76
No 97
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.3e-36 Score=332.42 Aligned_cols=197 Identities=23% Similarity=0.373 Sum_probs=164.0
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++++|++ .+++++ |+++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 71 (236)
T cd03219 1 LEVRGLTKRFGG--------LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSV-LFDGEDITGLPPHE 71 (236)
T ss_pred CeeeeeEEEECC--------EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceE-EECCEECCCCCHHH
Confidence 468899999963 358999 99999999999999999999999999999999999998 7765
Q ss_pred ----EEEEEecCCCCCCC-cHHHHHhcCCCCC-----------------hHHHHHHHHHhccchHHHhccCCCCccccCC
Q 001091 660 ----KKAYVPQSSWIQTG-TIRENILFGKDMR-----------------QSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1159)
Q Consensus 660 ----~iayv~Q~pwi~~g-TIreNIlfG~~~d-----------------~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~ 717 (1159)
.++|++|+|.++.+ |++|||.++.... +++.++.++..++ +......
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~ 140 (236)
T cd03219 72 IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL-----------ADLADRP 140 (236)
T ss_pred HHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCc-----------cchhhCC
Confidence 28999999988876 9999998864211 1122333333333 3334566
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCC
Q 001091 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDG 795 (1159)
Q Consensus 718 G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G 795 (1159)
..+||||||||++||||+.++|+++||||||++||+.+.+.+.+ .+..+. +++|+|++||+++.+.. ||+|++|++|
T Consensus 141 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G 219 (236)
T cd03219 141 AGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAE-LIRELRERGITVLLVEHDMDVVMSLADRVTVLDQG 219 (236)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCC
Confidence 77999999999999999999999999999999999999877655 555544 68999999999999865 9999999999
Q ss_pred eEEEecChHHHHh
Q 001091 796 KIEQSGKYEDLIA 808 (1159)
Q Consensus 796 ~I~e~Gt~~eL~~ 808 (1159)
+|++.|+++++.+
T Consensus 220 ~i~~~~~~~~~~~ 232 (236)
T cd03219 220 RVIAEGTPDEVRN 232 (236)
T ss_pred EEEeecCHHHhcc
Confidence 9999999988764
No 98
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-36 Score=329.90 Aligned_cols=199 Identities=27% Similarity=0.398 Sum_probs=170.1
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|++++|++ .++++| ||++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~ 73 (241)
T PRK14250 3 EIEFKEVSYSSFG--------KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI-LIDGVDIKTIDVI 73 (241)
T ss_pred eEEEEeEEEEeCC--------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEhhhcChH
Confidence 3789999999963 368999 99999999999999999999999999999999999999 7776
Q ss_pred ----EEEEEecCCCCCCCcHHHHHhcCCCC---ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHH
Q 001091 660 ----KKAYVPQSSWIQTGTIRENILFGKDM---RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1159)
Q Consensus 660 ----~iayv~Q~pwi~~gTIreNIlfG~~~---d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLA 732 (1159)
.++|++|+|.++..|++||+.++..+ ++++.++.++.++|.+++ ......+||||||||++||
T Consensus 74 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrl~la 143 (241)
T PRK14250 74 DLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY----------ATRDVKNLSGGEAQRVSIA 143 (241)
T ss_pred HhhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH----------hhCCcccCCHHHHHHHHHH
Confidence 38999999999999999999986432 234556677777665332 1235678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHHHHh
Q 001091 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 733 RAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
||++++|+++||||||++||+.+.+.+. +.++.+. .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 144 RTLANNPEVLLLDEPTSALDPTSTEIIE-ELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 9999999999999999999999877654 5666554 38999999999999764 99999999999999999999876
No 99
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3.6e-36 Score=347.66 Aligned_cols=198 Identities=34% Similarity=0.471 Sum_probs=168.6
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|++++|++ ...+++ ||++++||+++|+||+|||||||+++|.|+++|++|+| .++|
T Consensus 3 L~i~~l~~~~~~--------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I-~i~g~~i~~~~~~~ 73 (353)
T PRK10851 3 IEIANIKKSFGR--------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI-RFHGTDVSRLHARD 73 (353)
T ss_pred EEEEEEEEEeCC--------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCHHH
Confidence 789999999963 358999 99999999999999999999999999999999999999 8876
Q ss_pred -EEEEEecCCCCCC-CcHHHHHhcCCCC-------C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHH
Q 001091 660 -KKAYVPQSSWIQT-GTIRENILFGKDM-------R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1159)
Q Consensus 660 -~iayv~Q~pwi~~-gTIreNIlfG~~~-------d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQK 726 (1159)
.++||+|++.++. .|++|||.|+... + +++.++.++..+|.+..+ .+...||||||
T Consensus 74 r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGq~ 142 (353)
T PRK10851 74 RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD-----------RYPAQLSGGQK 142 (353)
T ss_pred CCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHH
Confidence 4899999999986 6999999997432 2 134455566666643332 34468999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCccccc-ccCEEEEEeCCeEEEecCh
Q 001091 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803 (1159)
Q Consensus 727 QRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~ 803 (1159)
||++||||++++|+++|||||||+||+++.+.+.+ .++.+.+ ++|+|+|||+++.+. .||+|++|++|+|++.|++
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~-~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~ 221 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRR-WLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTP 221 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999887754 5666553 789999999999865 5999999999999999999
Q ss_pred HHHHhh
Q 001091 804 EDLIAD 809 (1159)
Q Consensus 804 ~eL~~~ 809 (1159)
+++.++
T Consensus 222 ~~i~~~ 227 (353)
T PRK10851 222 DQVWRE 227 (353)
T ss_pred HHHHhC
Confidence 999873
No 100
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.7e-36 Score=349.15 Aligned_cols=200 Identities=29% Similarity=0.403 Sum_probs=171.4
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCC--CcEEEECC------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS--GAAIKVHG------ 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~--G~i~~v~g------ 659 (1159)
+.++++|++++|+. ...++| |+++++||+++|+||+||||||||++|.|+.+|++ |+| .++|
T Consensus 4 ~~l~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i-~~~g~~~~~~ 74 (362)
T TIGR03258 4 GGIRIDHLRVAYGA--------NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRI-AIADRDLTHA 74 (362)
T ss_pred eEEEEEEEEEEECC--------eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEE-EECCEECCCC
Confidence 45899999999963 358999 99999999999999999999999999999999999 999 8876
Q ss_pred -----EEEEEecCCCCCC-CcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHH
Q 001091 660 -----KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1159)
Q Consensus 660 -----~iayv~Q~pwi~~-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQK 726 (1159)
.++||+|++.+|. .|++|||.|+.. .+ +++.+++++..+|++..+..| .+||||||
T Consensus 75 ~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~ 143 (362)
T TIGR03258 75 PPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQ 143 (362)
T ss_pred CHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHH
Confidence 3899999999885 599999998743 12 235666777777765554443 58999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC---CcEEEEEccCcccc-cccCEEEEEeCCeEEEecC
Q 001091 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS---QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGK 802 (1159)
Q Consensus 727 QRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~---~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt 802 (1159)
|||+||||+.++|+++|||||||+||+...+.+.+ .++.+.+ |+|+|+|||+++.+ ..||+|++|++|++++.|+
T Consensus 144 QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~-~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~ 222 (362)
T TIGR03258 144 QRIAIARAIAIEPDVLLLDEPLSALDANIRANMRE-EIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGE 222 (362)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHH-HHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999877655 4555443 78999999999986 4599999999999999999
Q ss_pred hHHHHhh
Q 001091 803 YEDLIAD 809 (1159)
Q Consensus 803 ~~eL~~~ 809 (1159)
++|+.++
T Consensus 223 ~~~~~~~ 229 (362)
T TIGR03258 223 PQALYDA 229 (362)
T ss_pred HHHHHhC
Confidence 9999873
No 101
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=2.9e-36 Score=328.13 Aligned_cols=197 Identities=25% Similarity=0.441 Sum_probs=166.3
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|+++.|+.. ..++++| |+++++||.++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 1 l~~~~l~~~~~~~------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (220)
T cd03263 1 LQIRNLTKTYKKG------TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA-YINGYSIRTDRKAA 73 (220)
T ss_pred CEEEeeEEEeCCC------CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEecccchHHH
Confidence 4689999999642 2468999 99999999999999999999999999999999999999 7776
Q ss_pred --EEEEEecCCCCC-CCcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHH
Q 001091 660 --KKAYVPQSSWIQ-TGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1159)
Q Consensus 660 --~iayv~Q~pwi~-~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRI 729 (1159)
.++|++|+|-++ +.|++||+.++.. .+ +++.+++++.++|.+.. .....+||||||||+
T Consensus 74 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 142 (220)
T cd03263 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-----------NKRARTLSGGMKRKL 142 (220)
T ss_pred hhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hChhhhCCHHHHHHH
Confidence 379999999888 6899999987531 12 23456667766664332 233468999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHHH
Q 001091 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1159)
Q Consensus 730 aLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL 806 (1159)
+||||+.++|+++||||||++||+.+.+.+. +.++.+.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 143 ~la~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 143 SLAIALIGGPSVLLLDEPTSGLDPASRRAIW-DLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHHHhcCCCEEEECCCCCCCCHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999987765 466666667999999999999865 999999999999999998875
No 102
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-36 Score=336.97 Aligned_cols=200 Identities=28% Similarity=0.402 Sum_probs=173.2
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|+++.|+.. ..+++++ ||+|++||+++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 5 ~l~~~~l~~~~~~~------~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i-~~~g~~i~~~~~~ 77 (279)
T PRK13635 5 IIRVEHISFRYPDA------ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI-TVGGMVLSEETVW 77 (279)
T ss_pred eEEEEEEEEEeCCC------CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE-EECCEECCcCcHH
Confidence 58999999999642 3468999 99999999999999999999999999999999999999 8877
Q ss_pred ----EEEEEecCC--CCCCCcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHH
Q 001091 660 ----KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1159)
Q Consensus 660 ----~iayv~Q~p--wi~~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQK 726 (1159)
.++|++|+| .+++.|++|||.++.. .+ +++.+++++.++|.++++..| .+||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~ 146 (279)
T PRK13635 78 DVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQK 146 (279)
T ss_pred HHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHH
Confidence 379999998 5778999999998632 12 234667777777776655544 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccccccCEEEEEeCCeEEEecChH
Q 001091 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1159)
Q Consensus 727 QRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~ 804 (1159)
||++||||+..+|+++||||||++||+.+.+.+++ .++.+.+ |+|+|++||+++.++.||+|++|++|++++.|+.+
T Consensus 147 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (279)
T PRK13635 147 QRVAIAGVLALQPDIIILDEATSMLDPRGRREVLE-TVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPE 225 (279)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999887654 5666553 79999999999998889999999999999999999
Q ss_pred HHHh
Q 001091 805 DLIA 808 (1159)
Q Consensus 805 eL~~ 808 (1159)
++.+
T Consensus 226 ~~~~ 229 (279)
T PRK13635 226 EIFK 229 (279)
T ss_pred HHhc
Confidence 8876
No 103
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2e-36 Score=328.46 Aligned_cols=188 Identities=24% Similarity=0.401 Sum_probs=158.2
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++++|++. ..+++++ |+++++||+++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 2 l~~~~l~~~~~~~------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 74 (216)
T TIGR00960 2 IRFEQVSKAYPGG------HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKI-RFNGQDLTRLRGRE 74 (216)
T ss_pred eEEEEEEEEecCC------CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEehhhcChhH
Confidence 6899999999642 2468999 99999999999999999999999999999999999998 7765
Q ss_pred ------EEEEEecCCCCCC-CcHHHHHhcCCC---C----ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHH
Q 001091 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---M----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1159)
Q Consensus 660 ------~iayv~Q~pwi~~-gTIreNIlfG~~---~----d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQ 725 (1159)
.++|++|+|.++. .|++||+.++.. . .+++.+++++.++|.+..+.. ..+|||||
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~ 143 (216)
T TIGR00960 75 IPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHAL-----------PMQLSGGE 143 (216)
T ss_pred HHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHH
Confidence 3799999998876 699999987532 1 134556677777775544333 35899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeE
Q 001091 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1159)
Q Consensus 726 KQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I 797 (1159)
|||++||||++++|+++||||||++||+++.+.+.+ .+..+. +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 144 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 144 QQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMR-LFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999887754 565543 47999999999999864 999999999975
No 104
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=4.1e-36 Score=331.93 Aligned_cols=197 Identities=27% Similarity=0.386 Sum_probs=164.5
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++++|+.+ .+++++ ||++++||+++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 2 l~~~~l~~~~~~~-------~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 2 LEVENLSKVYPNG-------KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI-LLEGTDITKLRGKK 73 (243)
T ss_pred eEEEeeeeecCCC-------cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEE-EECCEEhhhCCHHH
Confidence 6789999999622 468999 99999999999999999999999999999999999998 7765
Q ss_pred ------EEEEEecCCCCCC-CcHHHHHhcCCCC---------------ChHHHHHHHHHhccchHHHhccCCCCccccCC
Q 001091 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM---------------RQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1159)
Q Consensus 660 ------~iayv~Q~pwi~~-gTIreNIlfG~~~---------------d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~ 717 (1159)
.++|++|++.++. .|++||+.++... ++++.+++++.++|.+. ....
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~ 142 (243)
T TIGR02315 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADK-----------AYQR 142 (243)
T ss_pred HHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhh-----------hcCC
Confidence 2799999998876 6999999876321 12234455555555432 2345
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEeC
Q 001091 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKD 794 (1159)
Q Consensus 718 G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~ 794 (1159)
..+||||||||++||||++++|+++||||||++||+.+.+.+. +.+..+. .++|+|++||+++.+. .||+|++|++
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVM-DYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKA 221 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 6799999999999999999999999999999999999977664 5566654 3799999999999985 5999999999
Q ss_pred CeEEEecChHHHH
Q 001091 795 GKIEQSGKYEDLI 807 (1159)
Q Consensus 795 G~I~e~Gt~~eL~ 807 (1159)
|++++.|+++++.
T Consensus 222 G~i~~~~~~~~~~ 234 (243)
T TIGR02315 222 GEIVFDGAPSELD 234 (243)
T ss_pred CEEEecCCHHHhC
Confidence 9999999998863
No 105
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-36 Score=332.87 Aligned_cols=203 Identities=26% Similarity=0.367 Sum_probs=171.7
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc-----CCCCcEEEECC---
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~-----~~~G~i~~v~g--- 659 (1159)
..++++|++++|++ .++++| |++|++||.++|+||+|||||||+++|.|.++ |++|+| .++|
T Consensus 12 ~~l~~~~l~~~~~~--------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i-~~~g~~~ 82 (260)
T PRK10744 12 SKIQVRNLNFYYGK--------FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI-LLDGENI 82 (260)
T ss_pred ceEEEEEEEEEeCC--------eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEE-EECCEEc
Confidence 46899999999963 368999 99999999999999999999999999999986 479998 6654
Q ss_pred ------------EEEEEecCCCCCCCcHHHHHhcCCC----CCh----HHHHHHHHHhccchHHHhccCCCCccccCCCC
Q 001091 660 ------------KKAYVPQSSWIQTGTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1159)
Q Consensus 660 ------------~iayv~Q~pwi~~gTIreNIlfG~~----~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~ 719 (1159)
+++|++|+|.++..|++||+.++.. .++ ++.+++++..++.+++. +..+++..
T Consensus 83 ~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 155 (260)
T PRK10744 83 LTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGY 155 (260)
T ss_pred cccccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCC
Confidence 4899999999999999999998632 222 34455666666644432 23456788
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEeCCeEE
Q 001091 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1159)
Q Consensus 720 ~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~ 798 (1159)
+||||||||++||||++++|+++||||||++||+.+.+.+. +.++.+.+++|+|++||+++.+. .||+|++|++|+++
T Consensus 156 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 234 (260)
T PRK10744 156 SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIE-ELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELI 234 (260)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999977665 45666656789999999999885 59999999999999
Q ss_pred EecChHHHHh
Q 001091 799 QSGKYEDLIA 808 (1159)
Q Consensus 799 e~Gt~~eL~~ 808 (1159)
+.|+.+++.+
T Consensus 235 ~~g~~~~~~~ 244 (260)
T PRK10744 235 EFGNTDTIFT 244 (260)
T ss_pred EeCCHHHHHh
Confidence 9999999876
No 106
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-36 Score=326.20 Aligned_cols=190 Identities=32% Similarity=0.414 Sum_probs=159.4
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++++|++ .++++| ||++++||.++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~~ 71 (213)
T cd03259 1 LELKGLSKTYGS--------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI-LIDGRDVTGVPPER 71 (213)
T ss_pred CeeeeeEEEeCC--------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEEcCcCchhh
Confidence 468999999963 368999 99999999999999999999999999999999999999 7765
Q ss_pred -EEEEEecCCCCCC-CcHHHHHhcCCCC---C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHH
Q 001091 660 -KKAYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1159)
Q Consensus 660 -~iayv~Q~pwi~~-gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIa 730 (1159)
.++|++|+|.++. .|++||+.++... + +++.++.++.+++.+..+ ....+||||||||++
T Consensus 72 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~ 140 (213)
T cd03259 72 RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-----------RYPHELSGGQQQRVA 140 (213)
T ss_pred ccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHH
Confidence 3899999998875 6999999876431 2 234456666666654433 334689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEeCCeEEEec
Q 001091 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 731 LARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~G 801 (1159)
||||+.++|+++||||||++||+.+.+.+. +.+..+. .|+|+|++||+++.+. .||+|++|++|++++.|
T Consensus 141 la~al~~~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 141 LARALAREPSLLLLDEPLSALDAKLREELR-EELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999977765 4566553 3899999999999875 49999999999998865
No 107
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.9e-36 Score=324.49 Aligned_cols=187 Identities=33% Similarity=0.476 Sum_probs=159.4
Q ss_pred EEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------E
Q 001091 592 DIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------K 660 (1159)
Q Consensus 592 ~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g----------~ 660 (1159)
+++|++++|+.. .+++++ ||++++||+++|+||+|||||||+++|.|.++|.+|+| .++| .
T Consensus 1 ~~~~l~~~~~~~-------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~ 72 (205)
T cd03226 1 RIENISFSYKKG-------TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI-LLNGKPIKAKERRKS 72 (205)
T ss_pred CcccEEEEeCCc-------CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEhhhHHhhcc
Confidence 367899999641 468999 99999999999999999999999999999999999999 8876 4
Q ss_pred EEEEecCC--CCCCCcHHHHHhcCCCC---ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 001091 661 KAYVPQSS--WIQTGTIRENILFGKDM---RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1159)
Q Consensus 661 iayv~Q~p--wi~~gTIreNIlfG~~~---d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAl 735 (1159)
++|++|+| .+++.|++||+.++.+. ++++.+++++.++|.+..+..| ..||||||||++||||+
T Consensus 73 i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral 141 (205)
T cd03226 73 IGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAAL 141 (205)
T ss_pred eEEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHH
Confidence 89999998 57789999999986432 3356778888888865544333 48999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCccccc-ccCEEEEEeCCeEE
Q 001091 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1159)
Q Consensus 736 y~~a~I~LLDDp~SALD~~t~~~if~~~i~g~-l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~ 798 (1159)
..+|+++||||||++||+.+.+.+. +.++.+ .+++|+|++||+++.+. .||+|++|++|+++
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 142 LSGKDLLIFDEPTSGLDYKNMERVG-ELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999977664 456655 35899999999999986 49999999999975
No 108
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-36 Score=331.43 Aligned_cols=198 Identities=27% Similarity=0.394 Sum_probs=163.7
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++++|+.+ .++++| |+++++|++++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 72 (241)
T cd03256 1 IEVENLSKTYPNG-------KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV-LIDGTDINKLKGKA 72 (241)
T ss_pred CEEeeEEEecCCc-------cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceE-EECCEeccccCHhH
Confidence 4689999999641 468999 99999999999999999999999999999999999998 7765
Q ss_pred ------EEEEEecCCCCCC-CcHHHHHhcCCC------------CC---hHHHHHHHHHhccchHHHhccCCCCccccCC
Q 001091 660 ------KKAYVPQSSWIQT-GTIRENILFGKD------------MR---QSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1159)
Q Consensus 660 ------~iayv~Q~pwi~~-gTIreNIlfG~~------------~d---~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~ 717 (1159)
.++|++|++.++. .|++||+.++.. .+ +++.++.++..+|.+ ....+
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~ 141 (241)
T cd03256 73 LRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-----------KAYQR 141 (241)
T ss_pred HHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh-----------hhCCC
Confidence 3899999988776 799999987532 11 122333444444432 23456
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEeC
Q 001091 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKD 794 (1159)
Q Consensus 718 G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~ 794 (1159)
+.+||||||||++||||+.++|+++||||||++||+++.+.+.+ .++.+. .|+|+|++||+++.+. .||+|++|++
T Consensus 142 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~ 220 (241)
T cd03256 142 ADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMD-LLKRINREEGITVIVSLHQVDLAREYADRIVGLKD 220 (241)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 78999999999999999999999999999999999999877654 565554 3899999999999987 6999999999
Q ss_pred CeEEEecChHHHHh
Q 001091 795 GKIEQSGKYEDLIA 808 (1159)
Q Consensus 795 G~I~e~Gt~~eL~~ 808 (1159)
|++++.|+++++.+
T Consensus 221 G~i~~~~~~~~~~~ 234 (241)
T cd03256 221 GRIVFDGPPAELTD 234 (241)
T ss_pred CEEEeecCHHHhhH
Confidence 99999999988743
No 109
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-36 Score=327.70 Aligned_cols=196 Identities=32% Similarity=0.443 Sum_probs=163.0
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------EE
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------KK 661 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------~i 661 (1159)
++++|++++|+... ...+++++ |+++++|++++|+||+|||||||+++|.|.++|.+|+| .++| .+
T Consensus 1 l~~~~l~~~~~~~~----~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGG----GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEV-LVDGEPVTGPGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCC----cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECccccCcE
Confidence 46899999997420 11478999 99999999999999999999999999999999999999 8876 48
Q ss_pred EEEecCCCCCC-CcHHHHHhcCCCC---C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHH
Q 001091 662 AYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1159)
Q Consensus 662 ayv~Q~pwi~~-gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLAR 733 (1159)
+||+|+|.++. .|++|||.++... + +++.++.++..+|.+.+.. ...+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENA-----------YPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CcccCCHHHHHHHHHHH
Confidence 99999998887 7999999876321 1 2345566666666544433 33589999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEe--CCeEEEecCh
Q 001091 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMK--DGKIEQSGKY 803 (1159)
Q Consensus 734 Aly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~--~G~I~e~Gt~ 803 (1159)
|++++|+++||||||++||+.+.+.+.+ .+..+. .++|+|++||+++.+. .||+|++|+ +|+|+++++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~-~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQE-ELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999887755 565553 3799999999999875 599999999 7999998764
No 110
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-36 Score=338.59 Aligned_cols=204 Identities=24% Similarity=0.433 Sum_probs=168.0
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|++++|+... ....++|+| |++|++||+++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 2 ~l~~~~l~~~y~~~~---~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i-~~~g~~i~~~~~~ 77 (286)
T PRK13646 2 TIRFDNVSYTYQKGT---PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTV-TVDDITITHKTKD 77 (286)
T ss_pred EEEEEEEEEEECCCC---ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEECcccccc
Confidence 378999999997430 012469999 99999999999999999999999999999999999998 7765
Q ss_pred --------EEEEEecCC--CCCCCcHHHHHhcCCC---CChH----HHHHHHHHhccchHHHhccCCCCccccCCCCCCC
Q 001091 660 --------KKAYVPQSS--WIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1159)
Q Consensus 660 --------~iayv~Q~p--wi~~gTIreNIlfG~~---~d~~----~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LS 722 (1159)
.++||+|+| .+++.|++|||.|+.. ++.+ +.++.++.++|..+ .......+||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LS 147 (286)
T PRK13646 78 KYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRD----------VMSQSPFQMS 147 (286)
T ss_pred chHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCC
Confidence 379999998 6888999999998742 2322 23344444444321 1235677999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEeCCeEEE
Q 001091 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1159)
Q Consensus 723 GGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e 799 (1159)
||||||++||||++.+|+++||||||++||+.+.+.+. +.++.+. .|+|+|+|||+++.+. .||+|++|++|+|++
T Consensus 148 gGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVM-RLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVS 226 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999987765 4566654 4899999999999875 699999999999999
Q ss_pred ecChHHHHh
Q 001091 800 SGKYEDLIA 808 (1159)
Q Consensus 800 ~Gt~~eL~~ 808 (1159)
.|+++++.+
T Consensus 227 ~g~~~~~~~ 235 (286)
T PRK13646 227 QTSPKELFK 235 (286)
T ss_pred ECCHHHHHh
Confidence 999999876
No 111
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-36 Score=337.80 Aligned_cols=185 Identities=33% Similarity=0.464 Sum_probs=157.9
Q ss_pred cccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-----------------EEEEEecCCCCC-
Q 001091 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------------KKAYVPQSSWIQ- 671 (1159)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-----------------~iayv~Q~pwi~- 671 (1159)
.++++| |+++++|++++|+||+|||||||+++|.|+++|.+|+| .++| .++|++|++.++
T Consensus 37 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i-~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 115 (269)
T cd03294 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKV-LIDGQDIAAMSRKELRELRRKKISMVFQSFALLP 115 (269)
T ss_pred ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEccccChhhhhhhhcCcEEEEecCcccCC
Confidence 457999 99999999999999999999999999999999999998 7654 489999999988
Q ss_pred CCcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEE
Q 001091 672 TGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (1159)
Q Consensus 672 ~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LL 744 (1159)
+.|++|||.++.. ++ +++.+++++.++|.+.+...| .+||||||||++||||++++|+++||
T Consensus 116 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 116 HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5799999987532 11 245566777777765554443 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEeCCeEEEecChHHHHh
Q 001091 745 DDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 745 DDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
||||++||+.+.+.+. +.+..+. .|+|+|++||+++.+. .||+|++|++|++++.|+++|+.+
T Consensus 185 DEPt~~LD~~~~~~l~-~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 185 DEAFSALDPLIRREMQ-DELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred cCCCccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999987665 4565553 3799999999999875 599999999999999999999876
No 112
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-36 Score=334.34 Aligned_cols=204 Identities=23% Similarity=0.364 Sum_probs=172.2
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC-----CCCcEEEECC--
Q 001091 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG-- 659 (1159)
Q Consensus 588 ~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~-----~~G~i~~v~g-- 659 (1159)
+..|+++|++++|++ .++++| |++|++||+++|+|++|||||||+++|.|+++| .+|+| .++|
T Consensus 17 ~~~l~~~nl~~~~~~--------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I-~~~g~~ 87 (267)
T PRK14235 17 EIKMRARDVSVFYGE--------KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKI-TLDGED 87 (267)
T ss_pred CceEEEEeEEEEECC--------EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE-EECCEE
Confidence 457999999999963 368999 999999999999999999999999999999975 89998 7665
Q ss_pred -------------EEEEEecCCCCCCCcHHHHHhcCCCC-----C----hHHHHHHHHHhccchHHHhccCCCCccccCC
Q 001091 660 -------------KKAYVPQSSWIQTGTIRENILFGKDM-----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1159)
Q Consensus 660 -------------~iayv~Q~pwi~~gTIreNIlfG~~~-----d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~ 717 (1159)
.++|++|+|.+++.|++|||.|+..+ + +++.+++++.+++.+++. +..+..
T Consensus 88 i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~ 160 (267)
T PRK14235 88 IYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEP 160 (267)
T ss_pred CcccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCC
Confidence 37999999999999999999986321 1 233456666666654332 223466
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEeCCe
Q 001091 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGK 796 (1159)
Q Consensus 718 G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~ 796 (1159)
+.+||||||||++||||++.+|+++||||||++||+++.+.+ .+++..+.+++|+|++||+++.+. .||++++|++|+
T Consensus 161 ~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~ 239 (267)
T PRK14235 161 GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV-EELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGN 239 (267)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHH-HHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCE
Confidence 789999999999999999999999999999999999997765 456776666789999999999985 589999999999
Q ss_pred EEEecChHHHHh
Q 001091 797 IEQSGKYEDLIA 808 (1159)
Q Consensus 797 I~e~Gt~~eL~~ 808 (1159)
+++.|+.+++..
T Consensus 240 i~~~g~~~~~~~ 251 (267)
T PRK14235 240 LVEVGDTEKMFT 251 (267)
T ss_pred EEEeCCHHHHHh
Confidence 999999998875
No 113
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-36 Score=314.50 Aligned_cols=209 Identities=25% Similarity=0.392 Sum_probs=174.2
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|.++.|+... ...+.+++ ||++.+||..+|+|+||||||||.++|+|..+|.+|+| .++|
T Consensus 3 ~l~v~nl~~~y~~~~----~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I-~~~G~~~~~~~~~ 77 (252)
T COG1124 3 LLSVRNLSIVYGGGK----FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSI-LLDGKPLAPKKRA 77 (252)
T ss_pred eEEEeceEEEecCCc----chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceE-EECCcccCccccc
Confidence 488999999998651 11268999 99999999999999999999999999999999999999 8888
Q ss_pred -----EEEEEecCCCC---CCCcHHHHHhcC-----CCCChHHHHHHHHHhccchH-HHhccCCCCccccCCCCCCCHHH
Q 001091 660 -----KKAYVPQSSWI---QTGTIRENILFG-----KDMRQSFYEEVLEGCALNQD-IEMWADGDLSVVGERGINLSGGQ 725 (1159)
Q Consensus 660 -----~iayv~Q~pwi---~~gTIreNIlfG-----~~~d~~~y~~vl~ac~L~~d-l~~lp~Gd~T~IGe~G~~LSGGQ 725 (1159)
.+-+|+|+|.= +.-||++-|.=+ .+-.+++..++++..+|.+. +...| ..|||||
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ 146 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQ 146 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhH
Confidence 37899999963 456888877522 22234567888999998764 45555 4799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccccc-cCEEEEEeCCeEEEecC
Q 001091 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1159)
Q Consensus 726 KQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt 802 (1159)
+||||||||+..+|+++||||||||||+.+...|.+ .+..+.+ +-|.|+|||++..+.+ ||+|.||++|+|+|.++
T Consensus 147 ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~Iln-lL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~ 225 (252)
T COG1124 147 RQRIAIARALIPEPKLLILDEPTSALDVSVQAQILN-LLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGP 225 (252)
T ss_pred HHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHH-HHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeec
Confidence 999999999999999999999999999999998876 3444444 5599999999999876 99999999999999999
Q ss_pred hHHHHhhcchHHH
Q 001091 803 YEDLIADQNSELV 815 (1159)
Q Consensus 803 ~~eL~~~~~~~~~ 815 (1159)
-+++.+.....|.
T Consensus 226 ~~~l~~~~~h~yt 238 (252)
T COG1124 226 TEELLSHPSHPYT 238 (252)
T ss_pred hhhhhcCCccHHH
Confidence 9999873233443
No 114
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-36 Score=327.04 Aligned_cols=195 Identities=24% Similarity=0.362 Sum_probs=163.4
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|++++|++ .++++| |+++++||.++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 1 i~~~~~~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (220)
T cd03265 1 IEVENLVKKYGD--------FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRA-TVAGHDVVREPREV 71 (220)
T ss_pred CEEEEEEEEECC--------EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEecCcChHHH
Confidence 478999999963 368999 99999999999999999999999999999999999998 7766
Q ss_pred --EEEEEecCCCCCC-CcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHH
Q 001091 660 --KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1159)
Q Consensus 660 --~iayv~Q~pwi~~-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRI 729 (1159)
.++|++|++.++. .|++|||.++.. .+ +++.++.++.++|.+..+. ...+||||||||+
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~ 140 (220)
T cd03265 72 RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADR-----------LVKTYSGGMRRRL 140 (220)
T ss_pred hhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhCCHHHHHHH
Confidence 4899999998776 599999987521 11 2345666777766543322 2358999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-C-CcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHHH
Q 001091 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1159)
Q Consensus 730 aLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~-~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL 806 (1159)
+||||++.+|+++||||||++||+++.+.+. +.+..+. + ++|+|++||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 141 EIARSLVHRPEVLFLDEPTIGLDPQTRAHVW-EYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999987665 4565554 3 7899999999999865 999999999999999988764
No 115
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-36 Score=332.98 Aligned_cols=202 Identities=22% Similarity=0.384 Sum_probs=169.0
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc--C---CCCcEEEECC----
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--R---ISGAAIKVHG---- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~--~---~~G~i~~v~g---- 659 (1159)
.|+++|+++.|+. .+++++ ||+|++||+++|+|++|||||||+++|.|+++ | ++|+| .++|
T Consensus 12 ~l~i~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i-~~~g~~~~ 82 (259)
T PRK14274 12 VYQINGMNLWYGQ--------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEM-NYNGSNIL 82 (259)
T ss_pred eEEEeeEEEEECC--------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEE-EECCEEcc
Confidence 5899999999963 368999 99999999999999999999999999999987 3 58998 6654
Q ss_pred -----------EEEEEecCCCCCCCcHHHHHhcCCCC----ChH----HHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 -----------~iayv~Q~pwi~~gTIreNIlfG~~~----d~~----~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.++|++|+|.+++.|++||+.|+... +++ +.+++++..++.+++. +.....+.+
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~ 155 (259)
T PRK14274 83 KGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALS 155 (259)
T ss_pred ccccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCccc
Confidence 38999999999999999999886431 211 2334455555544332 233567789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEeCCeEEE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e 799 (1159)
||||||||++||||++++|+++||||||++||+++.+.+ .+.+..+.+++|+|+|||+++.+. .||+|++|++|++++
T Consensus 156 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~ 234 (259)
T PRK14274 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKI-EELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVE 234 (259)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999997765 567777666899999999999875 599999999999999
Q ss_pred ecChHHHHh
Q 001091 800 SGKYEDLIA 808 (1159)
Q Consensus 800 ~Gt~~eL~~ 808 (1159)
.|+.+++.+
T Consensus 235 ~g~~~~~~~ 243 (259)
T PRK14274 235 CNDTNKMFS 243 (259)
T ss_pred ECCHHHHhh
Confidence 999999875
No 116
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=3.4e-36 Score=327.06 Aligned_cols=190 Identities=31% Similarity=0.435 Sum_probs=157.5
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++++|++.. ...+++++ ||++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~~~----~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~~~~~~~~~ 75 (218)
T cd03255 1 IELKNLSKTYGGGG----EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEV-RVDGTDISKLSEKE 75 (218)
T ss_pred CeEeeeEEEecCCC----cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeE-EECCEehhhcchhH
Confidence 46899999996420 01468999 99999999999999999999999999999999999998 7654
Q ss_pred -------EEEEEecCCCCCCC-cHHHHHhcCCCC---C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHH
Q 001091 660 -------KKAYVPQSSWIQTG-TIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1159)
Q Consensus 660 -------~iayv~Q~pwi~~g-TIreNIlfG~~~---d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGG 724 (1159)
.++|++|+|.++.+ |++||+.++..+ + +++.+++++..+|.+.+ ..+..+||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G 144 (218)
T cd03255 76 LAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRL-----------NHYPSELSGG 144 (218)
T ss_pred HHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhh-----------hcChhhcCHH
Confidence 48999999998876 999999986432 1 23445556655554332 3445689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccccccCEEEEEeCCeE
Q 001091 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1159)
Q Consensus 725 QKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~~aD~Iivl~~G~I 797 (1159)
||||++||||++++|+++||||||++||+++.+.+. +.+..+.+ ++|+|++||+++.+..||+|++|++|++
T Consensus 145 ~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 145 QQQRVAIARALANDPKIILADEPTGNLDSETGKEVM-ELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999977664 56666654 7999999999998888999999999975
No 117
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-36 Score=331.99 Aligned_cols=202 Identities=24% Similarity=0.356 Sum_probs=169.1
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc-----CCCCcEEEECC----
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG---- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~-----~~~G~i~~v~g---- 659 (1159)
.|+++|++++|+. .+++++ |++|++||+++|+|++|||||||+++|.|+++ |.+|+| .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v-~i~g~~~~ 74 (251)
T PRK14251 4 IISAKDVHLSYGN--------YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEI-KFEGQNIY 74 (251)
T ss_pred eEEEEeeEEEECC--------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEE-EECCEEcc
Confidence 4899999999963 368999 99999999999999999999999999999997 479998 6655
Q ss_pred -----------EEEEEecCCCCCCCcHHHHHhcCCCC----C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 -----------~iayv~Q~pwi~~gTIreNIlfG~~~----d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.++|++|++.+++.|++|||.++... + +++.+++++.+++.++.. .....+..+
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 147 (251)
T PRK14251 75 GSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK-------DNLDRNAQA 147 (251)
T ss_pred cccchHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH-------HHhccChhh
Confidence 38999999999999999999876421 1 134455666666643221 123456789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeCCeEEE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e 799 (1159)
||||||||++||||++++|+++||||||++||+.+.+.+. +.+..+.+++|+|++||+++.++. ||+|++|++|++++
T Consensus 148 LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14251 148 FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIE-ETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHH-HHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999977664 566666667999999999998765 99999999999999
Q ss_pred ecChHHHHh
Q 001091 800 SGKYEDLIA 808 (1159)
Q Consensus 800 ~Gt~~eL~~ 808 (1159)
.|+.+++..
T Consensus 227 ~~~~~~~~~ 235 (251)
T PRK14251 227 AGPTEEMFI 235 (251)
T ss_pred eCCHHHHHh
Confidence 999999875
No 118
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-33 Score=307.06 Aligned_cols=499 Identities=16% Similarity=0.170 Sum_probs=319.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLV--LASVFLFAKTVESLTQRQWYFGAN 343 (1159)
Q Consensus 266 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~--l~~~l~~~~~~~~l~~~~~~~~~~ 343 (1159)
...++|.+++.++....+.+...+.. ..++-.+-+++...+........+. +...+++++.+ ++.-.....+
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~g---~~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~i---s~lg~t~~gq 77 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGALG---IGLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLI---SQLGLTTLGQ 77 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 45678888888887766666554433 3333333334322221001100111 11122222222 2222222334
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCC--CC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHH
Q 001091 344 RIGIRVRSALTVLIYKRSMAIKFA--GP-SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1159)
Q Consensus 344 r~~~riR~~L~~~iy~K~L~ls~~--~~-~~G~i~nlms~D~~~i~~~~~~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~ 420 (1159)
..-.++|..++. |.+.-+.. .+ .++.++..++.|+..|.-.+..+.++..+.+-+..+..+|++.-+ ...+.
T Consensus 78 ~~I~klr~~~~~----kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp-~mf~l 152 (546)
T COG4615 78 HFIYKLRSEFIK----KILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSP-KMFLL 152 (546)
T ss_pred HHHHHHHHHHHH----HHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhH-HHHHH
Confidence 444555655544 44433221 12 788899999999999986666666666555555556666666555 56666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhcc--HHHHHHHHH-HHHHHHHHHHHHHHHH
Q 001091 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSW--EQEFLKKLL-RLREIERDSLKKYLYT 497 (1159)
Q Consensus 421 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~w--E~~f~~~i~-~~R~~E~~~l~~~~~~ 497 (1159)
.++.+++.+..+....++.-+...+..+..|+-.+..+.++.|-|.+|+..- +..+.+.+. ..++.+.+. .+.
T Consensus 153 ~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~----~~~ 228 (546)
T COG4615 153 TVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHI----IRA 228 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhh----hhh
Confidence 6666777777777777777777788888899999999999999999998762 222222222 122222211 111
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhcCCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001091 498 CSAI-AFLFWASPTLVSVITFGVCILLKTPL-TSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (1159)
Q Consensus 498 ~~~~-~~~~~~~~~lv~~~~f~~~~~~~~~L-t~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~ 575 (1159)
.... ....|....+.+++....|+...-.. +...+.|....+-.++.|+.+....++.+.+|.++++||.++-..|+.
T Consensus 229 n~f~~la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~ 308 (546)
T COG4615 229 NTFHLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYK 308 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCcc
Confidence 1111 12234433443343333333322222 222444445555668999999999999999999999999998776653
Q ss_pred CCCCCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcE
Q 001091 576 KKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1159)
Q Consensus 576 ~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i 654 (1159)
.+-....+. ++-..|+++|+.|+|++. ..-+.. |++|++||+|-|+|.+||||||++++++|.+.|++|+|
T Consensus 309 a~~~~~q~~-p~~~~lelrnvrfay~~~-------~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I 380 (546)
T COG4615 309 ADFPRPQAF-PDWKTLELRNVRFAYQDN-------AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380 (546)
T ss_pred ccCCCCCcC-CcccceeeeeeeeccCcc-------cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCce
Confidence 222111111 123469999999999865 366777 99999999999999999999999999999999999999
Q ss_pred EEECCE-------------EEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 655 IKVHGK-------------KAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 655 ~~v~g~-------------iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.++|+ ++-|.-|-|+|..++ -++. -.++..++-++.-.+..-. .+.+|--+ -..
T Consensus 381 -~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll-----~~e~~as~q~i~~~LqrLel~~kt-sl~d~~fs-----~~k 448 (546)
T COG4615 381 -LLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL-----GPEGKASPQLIEKWLQRLELAHKT-SLNDGRFS-----NLK 448 (546)
T ss_pred -eECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh-----CCccCCChHHHHHHHHHHHHhhhh-cccCCccc-----ccc
Confidence 99885 244555566665432 1222 2344444444433332211 12222221 247
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccccCEEEEEeCCeEE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~ 798 (1159)
||-|||.|+|+--|+.-+.|||+|||=-+--||+-.+.-.+..+ ..+ .|||++.|||+-++...|||++.|+||+++
T Consensus 449 LStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lL-p~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~ 527 (546)
T COG4615 449 LSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLL-PLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLS 527 (546)
T ss_pred cccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHh-HHHHHhCCeEEEEecCchhhhhHHHHHHHhcCcee
Confidence 99999999999999999999999999999999999765555443 333 499999999999999999999999999999
Q ss_pred Ee
Q 001091 799 QS 800 (1159)
Q Consensus 799 e~ 800 (1159)
|.
T Consensus 528 e~ 529 (546)
T COG4615 528 EL 529 (546)
T ss_pred ec
Confidence 85
No 119
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-36 Score=331.34 Aligned_cols=202 Identities=23% Similarity=0.370 Sum_probs=168.0
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc--C---CCCcEEEECC----
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--R---ISGAAIKVHG---- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~--~---~~G~i~~v~g---- 659 (1159)
.++++|++++|++ .+++++ |+++++||.++|+||+|||||||+++|.|..+ | .+|+| .++|
T Consensus 5 ~l~~~~l~~~~~~--------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i-~~~g~~~~ 75 (252)
T PRK14239 5 ILQVSDLSVYYNK--------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSI-VYNGHNIY 75 (252)
T ss_pred eEEEEeeEEEECC--------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceE-EECCEECc
Confidence 5899999999963 368999 99999999999999999999999999999853 5 48998 7654
Q ss_pred -----------EEEEEecCCCCCCCcHHHHHhcCCCC----Ch----HHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 -----------~iayv~Q~pwi~~gTIreNIlfG~~~----d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.++|++|+|.+++.|++||+.++... ++ ++.+++++.+++.+.+. +..+....+
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 148 (252)
T PRK14239 76 SPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALG 148 (252)
T ss_pred CcccchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCccc
Confidence 38999999999999999999875321 11 22334555555543332 234567789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEeCCeEEE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e 799 (1159)
||||||||++||||+.++|+++||||||++||+++.+.+. +.++.+.+++|+|++||+++.+. .||+|++|++|++++
T Consensus 149 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14239 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIE-ETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIE 227 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHH-HHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999988775 46666666799999999999875 599999999999999
Q ss_pred ecChHHHHh
Q 001091 800 SGKYEDLIA 808 (1159)
Q Consensus 800 ~Gt~~eL~~ 808 (1159)
.|+.+++.+
T Consensus 228 ~g~~~~~~~ 236 (252)
T PRK14239 228 YNDTKQMFM 236 (252)
T ss_pred eCCHHHHHh
Confidence 999999876
No 120
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-36 Score=331.55 Aligned_cols=202 Identities=26% Similarity=0.381 Sum_probs=170.0
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCC---ccC--CCCcEEEECC----
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE---IPR--ISGAAIKVHG---- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe---~~~--~~G~i~~v~g---- 659 (1159)
.++++|+++.|++ .+.+++ |+++++||.++|+||+|||||||+++|.|. +++ ++|+| .++|
T Consensus 3 ~l~~~~~~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i-~~~g~~~~ 73 (250)
T PRK14245 3 KIDARDVNFWYGD--------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEI-RIDGRNIY 73 (250)
T ss_pred EEEEEEEEEEECC--------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEE-EECCEecc
Confidence 5889999999963 358999 999999999999999999999999999986 454 48998 6664
Q ss_pred -----------EEEEEecCCCCCCCcHHHHHhcCCCC----C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 -----------~iayv~Q~pwi~~gTIreNIlfG~~~----d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.++|++|+|.+++.|++|||.++... + +++.+++++.++|.++++ +...+.+.+
T Consensus 74 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 146 (250)
T PRK14245 74 DKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFA 146 (250)
T ss_pred cccccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCccc
Confidence 38999999999999999999876321 1 234556667677654443 233467789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEeCCeEEE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e 799 (1159)
||||||||++||||++++|+++||||||++||+.+.+.+. +.++.+.+++|+|+|||+++.+. .||+|++|++|++++
T Consensus 147 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~ 225 (250)
T PRK14245 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVE-ELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999987664 56766666899999999999875 599999999999999
Q ss_pred ecChHHHHh
Q 001091 800 SGKYEDLIA 808 (1159)
Q Consensus 800 ~Gt~~eL~~ 808 (1159)
.|+++++.+
T Consensus 226 ~~~~~~~~~ 234 (250)
T PRK14245 226 YDDTKKIFT 234 (250)
T ss_pred ECCHHHHhc
Confidence 999999876
No 121
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=6.9e-36 Score=314.33 Aligned_cols=165 Identities=28% Similarity=0.551 Sum_probs=150.3
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE---------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~--------- 660 (1159)
|+++|++++|+.. ..+++++ |+++++||.++|+||+|||||||+++|.|+++|.+|+| .++|.
T Consensus 1 i~~~~~~~~~~~~------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 73 (178)
T cd03247 1 LSINNVSFSYPEQ------EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI-TLDGVPVSDLEKAL 73 (178)
T ss_pred CEEEEEEEEeCCC------CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEE-EECCEEHHHHHHHH
Confidence 4789999999743 2468999 99999999999999999999999999999999999999 88773
Q ss_pred ---EEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHcc
Q 001091 661 ---KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1159)
Q Consensus 661 ---iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~ 737 (1159)
++|++|+|++++.|++||| ..+||||||||++||||+.+
T Consensus 74 ~~~i~~~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~ 115 (178)
T cd03247 74 SSLISVLNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQ 115 (178)
T ss_pred HhhEEEEccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhc
Confidence 8999999999999999998 56899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEec
Q 001091 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 738 ~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~G 801 (1159)
+|+++||||||++||+++.+.+.+ .++.+.+++|+|++||+.+.++.||++++|++|++++.|
T Consensus 116 ~p~~lllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 116 DAPIVLLDEPTVGLDPITERQLLS-LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred CCCEEEEECCcccCCHHHHHHHHH-HHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999776654 566655789999999999999999999999999998765
No 122
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-36 Score=344.96 Aligned_cols=201 Identities=25% Similarity=0.365 Sum_probs=167.6
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|++++|+... ...++++| ||++++||+++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 2 i~i~~l~~~y~~~~----~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I-~~~g~~i~~~~~~~ 76 (343)
T PRK11153 2 IELKNISKVFPQGG----RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRV-LVDGQDLTALSEKE 76 (343)
T ss_pred EEEEeEEEEeCCCC----CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCcCCHHH
Confidence 68999999997320 13568999 99999999999999999999999999999999999999 7765
Q ss_pred ------EEEEEecCCCCCC-CcHHHHHhcCCC---CCh----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHH
Q 001091 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1159)
Q Consensus 660 ------~iayv~Q~pwi~~-gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQ 725 (1159)
+++|++|++.++. .|++|||.++.. .++ ++.++.++..+|.+.. .....+|||||
T Consensus 77 ~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGq 145 (343)
T PRK11153 77 LRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKA-----------DRYPAQLSGGQ 145 (343)
T ss_pred HHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHH
Confidence 3899999999886 799999988642 222 2334455555554322 33456899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccc-cCEEEEEeCCeEEEecC
Q 001091 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1159)
Q Consensus 726 KQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt 802 (1159)
|||++||||+.++|+++|||||||+||+.+.+.+.+ .++.+. .|+|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 146 ~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~-~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~ 224 (343)
T PRK11153 146 KQRVAIARALASNPKVLLCDEATSALDPATTRSILE-LLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224 (343)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999999877654 566554 37999999999999765 99999999999999999
Q ss_pred hHHHHh
Q 001091 803 YEDLIA 808 (1159)
Q Consensus 803 ~~eL~~ 808 (1159)
.+++..
T Consensus 225 ~~~~~~ 230 (343)
T PRK11153 225 VSEVFS 230 (343)
T ss_pred HHHHHh
Confidence 999976
No 123
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=337.81 Aligned_cols=203 Identities=23% Similarity=0.367 Sum_probs=168.1
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|++++|+.... ...+++++ |++|++||.++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 3 i~~~~l~~~y~~~~~---~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i-~~~g~~~~~~~~~~ 78 (305)
T PRK13651 3 IKVKNIVKIFNKKLP---TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTI-EWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEECCCCC---ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE-EEeceecccccccc
Confidence 789999999975300 11368999 99999999999999999999999999999999999998 6642
Q ss_pred ---------------------------EEEEEecCC--CCCCCcHHHHHhcCCC---CCh----HHHHHHHHHhccchHH
Q 001091 660 ---------------------------KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDI 703 (1159)
Q Consensus 660 ---------------------------~iayv~Q~p--wi~~gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~dl 703 (1159)
.++||+|+| -++..|++|||.||.. .++ ++.+++++.++|..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~ 158 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY 158 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh
Confidence 379999986 6788999999999852 222 3455666666664322
Q ss_pred HhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccc
Q 001091 704 EMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEF 782 (1159)
Q Consensus 704 ~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~ 782 (1159)
......+||||||||++||||+..+|+++||||||++||+...+.+.+ .++.+. .|+|+|+|||+++.
T Consensus 159 ----------~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivtHd~~~ 227 (305)
T PRK13651 159 ----------LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILE-IFDNLNKQGKTIILVTHDLDN 227 (305)
T ss_pred ----------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeeCHHH
Confidence 224567899999999999999999999999999999999998776654 565543 48999999999998
Q ss_pred c-cccCEEEEEeCCeEEEecChHHHHh
Q 001091 783 L-DAADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 783 l-~~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
+ ..||+|++|++|+|++.|+.+++.+
T Consensus 228 ~~~~adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 228 VLEWTKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred HHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 6 5699999999999999999999876
No 124
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-36 Score=335.79 Aligned_cols=201 Identities=27% Similarity=0.385 Sum_probs=171.3
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCC---CcEEEECC-----
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS---GAAIKVHG----- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~---G~i~~v~g----- 659 (1159)
..|+++|+++.|++. ..+++++ |++|++||.++|+||+|||||||+++|.|+++|.+ |+| .++|
T Consensus 4 ~~l~i~~l~~~~~~~------~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i-~i~g~~~~~ 76 (282)
T PRK13640 4 NIVEFKHVSFTYPDS------KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKI-TVDGITLTA 76 (282)
T ss_pred ceEEEEEEEEEcCCC------CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEE-EECCEECCc
Confidence 468999999999743 2468999 99999999999999999999999999999999988 888 7766
Q ss_pred --------EEEEEecCCC--CCCCcHHHHHhcCCC---CCh----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCC
Q 001091 660 --------KKAYVPQSSW--IQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1159)
Q Consensus 660 --------~iayv~Q~pw--i~~gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LS 722 (1159)
.++|++|+|+ +++.|++|||.|+.+ .++ ++.+++++.++|.+..... ..+||
T Consensus 77 ~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LS 145 (282)
T PRK13640 77 KTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSE-----------PANLS 145 (282)
T ss_pred CCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCC-----------cccCC
Confidence 3799999984 678999999998743 222 3456667777776544433 36999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccccccCEEEEEeCCeEEEe
Q 001091 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1159)
Q Consensus 723 GGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~ 800 (1159)
||||||++||||++++|+++||||||++||+.+.+.+.+ .+..+.+ |+|+|++||+++.+..||+|++|++|++++.
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~ 224 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILK-LIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQ 224 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999887755 5665543 7999999999999988999999999999999
Q ss_pred cChHHHHh
Q 001091 801 GKYEDLIA 808 (1159)
Q Consensus 801 Gt~~eL~~ 808 (1159)
|+.+++.+
T Consensus 225 g~~~~~~~ 232 (282)
T PRK13640 225 GSPVEIFS 232 (282)
T ss_pred CCHHHHhc
Confidence 99998875
No 125
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-35 Score=335.23 Aligned_cols=199 Identities=23% Similarity=0.398 Sum_probs=170.3
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.|+++|++++|+.+ .+++++ ||+|++||.++|+|++|||||||+++|.|.++|.+|+| .++|
T Consensus 5 ~l~~~~l~~~~~~~-------~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i-~i~g~~~~~~~~~ 76 (283)
T PRK13636 5 ILKVEELNYNYSDG-------THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI-LFDGKPIDYSRKG 76 (283)
T ss_pred eEEEEeEEEEeCCC-------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEE-EECCEECCCCcch
Confidence 58999999999632 468999 99999999999999999999999999999999999999 7776
Q ss_pred ------EEEEEecCC--CCCCCcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHH
Q 001091 660 ------KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1159)
Q Consensus 660 ------~iayv~Q~p--wi~~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGG 724 (1159)
.++|++|+| .+++.|++|||.++.. +. +++.+++++.++|.+. ......+||||
T Consensus 77 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G 145 (283)
T PRK13636 77 LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL-----------KDKPTHCLSFG 145 (283)
T ss_pred HHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhCCcccCCHH
Confidence 279999998 6789999999987532 11 2345666666666432 23567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCccccc-ccCEEEEEeCCeEEEec
Q 001091 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 725 QKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~G 801 (1159)
||||++||||++.+|+++||||||++||+.+.+.+. +.+..+.+ |+|+|++||+++.++ .||+|++|++|++++.|
T Consensus 146 ~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g 224 (283)
T PRK13636 146 QKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM-KLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQG 224 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999987665 45666543 899999999999986 59999999999999999
Q ss_pred ChHHHHh
Q 001091 802 KYEDLIA 808 (1159)
Q Consensus 802 t~~eL~~ 808 (1159)
+++++.+
T Consensus 225 ~~~~~~~ 231 (283)
T PRK13636 225 NPKEVFA 231 (283)
T ss_pred CHHHHhc
Confidence 9999876
No 126
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-35 Score=326.65 Aligned_cols=201 Identities=28% Similarity=0.402 Sum_probs=165.1
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|++++|++.. ...+++++ ||++++||.++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 2 i~~~~l~~~~~~~~----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 76 (233)
T cd03258 2 IELKNVSKVFGDTG----GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSV-LVDGTDLTLLSGKE 76 (233)
T ss_pred eEEecceEEccCCC----CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcccCCHHH
Confidence 68899999996420 01278999 99999999999999999999999999999999999998 7764
Q ss_pred ------EEEEEecCCCCCC-CcHHHHHhcCCC---CCh----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHH
Q 001091 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1159)
Q Consensus 660 ------~iayv~Q~pwi~~-gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQ 725 (1159)
.++|++|+|.++. .|++|||.++.. .+. ++.++.++..+|.+. ......+|||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~ 145 (233)
T cd03258 77 LRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDK-----------ADAYPAQLSGGQ 145 (233)
T ss_pred HHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhcChhhCCHHH
Confidence 3899999999986 699999987632 221 233444444444332 234457899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccc-cCEEEEEeCCeEEEecC
Q 001091 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1159)
Q Consensus 726 KQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt 802 (1159)
|||++||||+.++|+++||||||++||+.+.+.+. +.+..+. .|+|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 146 ~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 224 (233)
T cd03258 146 KQRVGIARALANNPKVLLCDEATSALDPETTQSIL-ALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT 224 (233)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999977664 4566554 38999999999999765 99999999999999999
Q ss_pred hHHHHh
Q 001091 803 YEDLIA 808 (1159)
Q Consensus 803 ~~eL~~ 808 (1159)
.+++.+
T Consensus 225 ~~~~~~ 230 (233)
T cd03258 225 VEEVFA 230 (233)
T ss_pred HHHHhc
Confidence 888764
No 127
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-35 Score=333.55 Aligned_cols=198 Identities=30% Similarity=0.430 Sum_probs=167.6
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++++|+.+ .++++| ||+|++||.++|+||+|||||||+++|.|+++|++|+| .++|
T Consensus 2 l~~~~l~~~~~~~-------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~ 73 (274)
T PRK13644 2 IRLENVSYSYPDG-------TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV-LVSGIDTGDFSKLQ 73 (274)
T ss_pred EEEEEEEEEcCCC-------CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEECCccccHH
Confidence 6899999999632 458999 99999999999999999999999999999999999998 7765
Q ss_pred ----EEEEEecCCC--CCCCcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHH
Q 001091 660 ----KKAYVPQSSW--IQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1159)
Q Consensus 660 ----~iayv~Q~pw--i~~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQK 726 (1159)
.++|++|+|. +++.|++|||.|+.. .+ +++.+++++.++|.+.. ......||||||
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~ 142 (274)
T PRK13644 74 GIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYR-----------HRSPKTLSGGQG 142 (274)
T ss_pred HHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHh-----------cCCcccCCHHHH
Confidence 3799999986 577899999998742 22 23445556666654332 334568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEEEEEeCCeEEEecChHH
Q 001091 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1159)
Q Consensus 727 QRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~e 805 (1159)
||++||||++++|+++||||||++||+.+.+.+.+ .++.+. +|+|+|++||+++.++.||+|++|++|++++.|+.++
T Consensus 143 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 221 (274)
T PRK13644 143 QCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLE-RIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPEN 221 (274)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999777654 465543 4899999999999998899999999999999999998
Q ss_pred HHh
Q 001091 806 LIA 808 (1159)
Q Consensus 806 L~~ 808 (1159)
+..
T Consensus 222 ~~~ 224 (274)
T PRK13644 222 VLS 224 (274)
T ss_pred Hhc
Confidence 865
No 128
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.1e-35 Score=320.84 Aligned_cols=190 Identities=26% Similarity=0.367 Sum_probs=162.4
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|++++|++ .+.+++ ||++++|+.++|+||+|||||||+++|.|+.+|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 71 (208)
T cd03268 1 LKTNDLTKTYGK--------KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI-TFDGKSYQKNIEAL 71 (208)
T ss_pred CEEEEEEEEECC--------eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCCcccchHHHH
Confidence 468999999953 468999 99999999999999999999999999999999999999 8876
Q ss_pred -EEEEEecCCCCC-CCcHHHHHhcCCC---CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHH
Q 001091 660 -KKAYVPQSSWIQ-TGTIRENILFGKD---MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1159)
Q Consensus 660 -~iayv~Q~pwi~-~gTIreNIlfG~~---~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARA 734 (1159)
.++||+|++.++ +.|++||+.++.. .++++.+++++..++.+.++ .....||||||||++||||
T Consensus 72 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~a 140 (208)
T cd03268 72 RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-----------KKVKGFSLGMKQRLGIALA 140 (208)
T ss_pred hhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-----------hhHhhCCHHHHHHHHHHHH
Confidence 389999999877 6899999987532 24556677777777754433 3456899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeEEEec
Q 001091 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 735 ly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~G 801 (1159)
+..+|+++||||||++||+.+.+.+.+ .+..+. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 141 l~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 141 LLGNPDLLILDEPTNGLDPDGIKELRE-LILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999877654 565544 58999999999999864 9999999999998765
No 129
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-35 Score=345.60 Aligned_cols=202 Identities=26% Similarity=0.379 Sum_probs=169.9
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
..++++|++++|++ .+++++ ||++++||+++|+||+||||||||++|.|+.+|.+|+| .++|
T Consensus 18 ~~l~l~~v~~~~~~--------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I-~i~g~~i~~~~~ 88 (377)
T PRK11607 18 PLLEIRNLTKSFDG--------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI-MLDGVDLSHVPP 88 (377)
T ss_pred ceEEEEeEEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCCCCH
Confidence 45999999999963 358999 99999999999999999999999999999999999999 8877
Q ss_pred ---EEEEEecCCCCCC-CcHHHHHhcCCC---CCh----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHH
Q 001091 660 ---KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1159)
Q Consensus 660 ---~iayv~Q~pwi~~-gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQR 728 (1159)
.++||+|++-+|. .|++|||.|+.. .+. ++.+++++..+|.+..+. +..+||||||||
T Consensus 89 ~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-----------~~~~LSgGq~QR 157 (377)
T PRK11607 89 YQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKR-----------KPHQLSGGQRQR 157 (377)
T ss_pred HHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHH
Confidence 3899999999986 599999999743 222 344566666666543333 335899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccc-cccCEEEEEeCCeEEEecChHH
Q 001091 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYED 805 (1159)
Q Consensus 729 IaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~e 805 (1159)
|+||||+..+|+++|||||||+||++..+.+.+. +..+. .|.|+|+|||+.+.+ ..||+|++|++|+|++.|+.+|
T Consensus 158 VaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~-l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~ 236 (377)
T PRK11607 158 VALARSLAKRPKLLLLDEPMGALDKKLRDRMQLE-VVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEE 236 (377)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHH
Confidence 9999999999999999999999999998776543 44443 379999999999985 5699999999999999999999
Q ss_pred HHhhcc
Q 001091 806 LIADQN 811 (1159)
Q Consensus 806 L~~~~~ 811 (1159)
+..+..
T Consensus 237 ~~~~p~ 242 (377)
T PRK11607 237 IYEHPT 242 (377)
T ss_pred HHhCCc
Confidence 987333
No 130
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=332.29 Aligned_cols=204 Identities=25% Similarity=0.356 Sum_probs=173.2
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc-----CCCCcEEEECC--
Q 001091 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG-- 659 (1159)
Q Consensus 588 ~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~-----~~~G~i~~v~g-- 659 (1159)
...|+++|++++|+. .++++| ||++++||.++|+|++|||||||+++|.|+++ |++|+| .++|
T Consensus 18 ~~~l~~~nl~~~~~~--------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~ 88 (267)
T PRK14237 18 EIALSTKDLHVYYGK--------KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQI-LYRGID 88 (267)
T ss_pred CeEEEEeeEEEEECC--------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEE-EECCEE
Confidence 346999999999953 468999 99999999999999999999999999999996 579998 6665
Q ss_pred -------------EEEEEecCCCCCCCcHHHHHhcCCCC----C----hHHHHHHHHHhccchHHHhccCCCCccccCCC
Q 001091 660 -------------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1159)
Q Consensus 660 -------------~iayv~Q~pwi~~gTIreNIlfG~~~----d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G 718 (1159)
.++|++|++.++..|++|||.++... + +++..++++.++|.++++ +..+...
T Consensus 89 ~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~ 161 (267)
T PRK14237 89 INRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSA 161 (267)
T ss_pred cccccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCc
Confidence 38999999999999999999886321 1 234556677777765442 2345678
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEeCCeE
Q 001091 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1159)
Q Consensus 719 ~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I 797 (1159)
.+||||||||++||||++++|+++||||||++||+.+.+.+. +.+..+.+++|+|++||+++.+. .||+|++|++|++
T Consensus 162 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 240 (267)
T PRK14237 162 LTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLE-ETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDL 240 (267)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 899999999999999999999999999999999999977665 46666666899999999999875 5999999999999
Q ss_pred EEecChHHHHh
Q 001091 798 EQSGKYEDLIA 808 (1159)
Q Consensus 798 ~e~Gt~~eL~~ 808 (1159)
++.|+.+++.+
T Consensus 241 ~~~g~~~~~~~ 251 (267)
T PRK14237 241 IEYDKTRNIFT 251 (267)
T ss_pred EEeCCHHHHhc
Confidence 99999999865
No 131
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.1e-35 Score=324.01 Aligned_cols=198 Identities=27% Similarity=0.432 Sum_probs=162.4
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|++++|+. .+++++ ||++++||.++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 71 (222)
T cd03224 1 LEVENLNAGYGK--------SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI-RFDGRDITGLPPHE 71 (222)
T ss_pred CEEeeEEeecCC--------eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcCCCCHHH
Confidence 468999999963 368999 99999999999999999999999999999999999998 7765
Q ss_pred ----EEEEEecCCCCCCC-cHHHHHhcCCCCC--h---HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHH
Q 001091 660 ----KKAYVPQSSWIQTG-TIRENILFGKDMR--Q---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1159)
Q Consensus 660 ----~iayv~Q~pwi~~g-TIreNIlfG~~~d--~---~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRI 729 (1159)
.++|++|++.++.+ |++||+.++.... . ++.+++++.. ..+ ......+..+||||||||+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~~l----~~~~~~~~~~LS~G~~qrv 141 (222)
T cd03224 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------PRL----KERRKQLAGTLSGGEQQML 141 (222)
T ss_pred HHhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------Hhh----hhhhhCchhhCCHHHHHHH
Confidence 38999999988876 9999998875432 1 1222233322 111 1223456778999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHHHH
Q 001091 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807 (1159)
Q Consensus 730 aLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~ 807 (1159)
+||||+..+|+++||||||++||+++.+.+. +.++.+. +++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 142 ~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 142 AIARALMSRPKLLLLDEPSEGLAPKIVEEIF-EAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HHHHHHhcCCCEEEECCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999999977665 4565554 57999999999998754 9999999999999999988775
Q ss_pred h
Q 001091 808 A 808 (1159)
Q Consensus 808 ~ 808 (1159)
+
T Consensus 221 ~ 221 (222)
T cd03224 221 A 221 (222)
T ss_pred c
Confidence 3
No 132
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=331.10 Aligned_cols=203 Identities=24% Similarity=0.362 Sum_probs=169.2
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC-----CCCcEEEECC---
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~-----~~G~i~~v~g--- 659 (1159)
..++++|+++.|++ .++++| |++|++||+++|+|++|||||||+++|.|..+| ++|+| .++|
T Consensus 11 ~~l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i-~~~g~~i 81 (258)
T PRK14268 11 PQIKVENLNLWYGE--------KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKV-SIEGEDI 81 (258)
T ss_pred eeEEEeeeEEEeCC--------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEE-EECCEEc
Confidence 35999999999963 358999 999999999999999999999999999999975 79998 6654
Q ss_pred ------------EEEEEecCCCCCCCcHHHHHhcCCC---CChH----HHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 ------------KKAYVPQSSWIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 ------------~iayv~Q~pwi~~gTIreNIlfG~~---~d~~----~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.++|++|++.+++.|++||+.|+.. .+.+ +.+++++.+++.+++. ........+
T Consensus 82 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 154 (258)
T PRK14268 82 YEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALS 154 (258)
T ss_pred ccccchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhh
Confidence 3899999999999999999998632 2222 2344555555543221 223456789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEeCCeEEE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e 799 (1159)
||||||||++||||++.+|+++||||||++||+.+.+.+ .+.++.+.+++|+|++||+++.+. .||+|++|++|++++
T Consensus 155 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 233 (258)
T PRK14268 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARI-EDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIE 233 (258)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHH-HHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998766 456766656899999999999875 499999999999999
Q ss_pred ecChHHHHh
Q 001091 800 SGKYEDLIA 808 (1159)
Q Consensus 800 ~Gt~~eL~~ 808 (1159)
.|+++++.+
T Consensus 234 ~~~~~~~~~ 242 (258)
T PRK14268 234 FGQTRQIFH 242 (258)
T ss_pred eCCHHHHhc
Confidence 999999875
No 133
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-35 Score=328.40 Aligned_cols=202 Identities=24% Similarity=0.370 Sum_probs=168.4
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCC-----CCcEEEECC----
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-----SGAAIKVHG---- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~-----~G~i~~v~g---- 659 (1159)
.++++|+++.|++ .+++++ |++|++|++++|+||+|||||||+++|.|+++|. +|+| .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v-~~~g~~~~ 74 (251)
T PRK14249 4 KIKIRGVNFFYHK--------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAV-LLDNENIY 74 (251)
T ss_pred eEEEEEEEEEECC--------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEE-EECCEEcc
Confidence 5899999999963 358999 9999999999999999999999999999999987 5988 6543
Q ss_pred -----------EEEEEecCCCCCCCcHHHHHhcCCCC----Ch----HHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 -----------~iayv~Q~pwi~~gTIreNIlfG~~~----d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.++|++|+|.+++.|++|||.++..+ .+ ++.+++++..+|.+.++ +.....+.+
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~ 147 (251)
T PRK14249 75 SPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLA 147 (251)
T ss_pred ccccChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCccc
Confidence 48999999999999999999987432 11 22333344444433222 335677889
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeCCeEEE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e 799 (1159)
||||||||++||||++++|+++||||||++||+.+.+.+. +.+..+.+++|+|++||+++.+.. ||+|++|++|++++
T Consensus 148 LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14249 148 LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIE-ELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVE 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEE
Confidence 9999999999999999999999999999999999987664 567666568999999999999865 79999999999999
Q ss_pred ecChHHHHh
Q 001091 800 SGKYEDLIA 808 (1159)
Q Consensus 800 ~Gt~~eL~~ 808 (1159)
.|+.+++..
T Consensus 227 ~~~~~~~~~ 235 (251)
T PRK14249 227 YGRTGEIFS 235 (251)
T ss_pred eCCHHHHHh
Confidence 999998865
No 134
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-35 Score=328.02 Aligned_cols=200 Identities=28% Similarity=0.410 Sum_probs=164.8
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++++|++. .+++++ |+++++|++++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 72 (242)
T cd03295 1 IEFENVTKRYGGG-------KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI-FIDGEDIREQDPVE 72 (242)
T ss_pred CEEEEEEEEeCCc-------ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCeEcCcCChHH
Confidence 4689999999741 358999 99999999999999999999999999999999999998 7765
Q ss_pred ---EEEEEecCCCCCC-CcHHHHHhcCCCC---C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHH
Q 001091 660 ---KKAYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1159)
Q Consensus 660 ---~iayv~Q~pwi~~-gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQR 728 (1159)
.++|++|+|.++. .|++||+.++..+ + +++.+++++..++.+ .......+.+||||||||
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qr 143 (242)
T cd03295 73 LRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQR 143 (242)
T ss_pred hhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHH
Confidence 3799999998885 7999999876422 2 123344445444432 012345678999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEeCCeEEEecChHH
Q 001091 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYED 805 (1159)
Q Consensus 729 IaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~e 805 (1159)
++||||++++|+++||||||++||+.+.+.+. +.+..+. +|+|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 144 v~laral~~~p~llllDEPt~~LD~~~~~~l~-~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 222 (242)
T cd03295 144 VGVARALAADPPLLLMDEPFGALDPITRDQLQ-EEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDE 222 (242)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999977654 4565554 3899999999999764 599999999999999999988
Q ss_pred HHh
Q 001091 806 LIA 808 (1159)
Q Consensus 806 L~~ 808 (1159)
+.+
T Consensus 223 ~~~ 225 (242)
T cd03295 223 ILR 225 (242)
T ss_pred HHc
Confidence 865
No 135
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-35 Score=327.79 Aligned_cols=202 Identities=24% Similarity=0.381 Sum_probs=169.3
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC-----CCCcEEEECC----
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~-----~~G~i~~v~g---- 659 (1159)
.++++|+++.|++ .+.++| ||++++||+++|+||+|||||||+++|.|.+++ ++|+| .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~~~ 73 (250)
T PRK14240 3 KISVKDLDLFYGD--------FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEV-LLDGQDIY 73 (250)
T ss_pred eEEEEEEEEEECC--------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-EECCEEcc
Confidence 4889999999963 358999 999999999999999999999999999998763 68998 7765
Q ss_pred -----------EEEEEecCCCCCCCcHHHHHhcCCCC----C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 -----------~iayv~Q~pwi~~gTIreNIlfG~~~----d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.++|++|+|.+++.|++|||.++... + +++.+++++.+++.+++. ........+
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~ 146 (250)
T PRK14240 74 KSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALG 146 (250)
T ss_pred ccccchHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCC
Confidence 38999999999999999999987421 1 223344555665544443 234556789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeCCeEEE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e 799 (1159)
||||||||++||||++++|+++||||||++||+.+.+.+ .+++..+.+++|+|++||+++.+.. ||+|++|++|++++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~ 225 (250)
T PRK14240 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKI-EELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVE 225 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998766 5567766668999999999998754 99999999999999
Q ss_pred ecChHHHHh
Q 001091 800 SGKYEDLIA 808 (1159)
Q Consensus 800 ~Gt~~eL~~ 808 (1159)
.|+.+++..
T Consensus 226 ~~~~~~~~~ 234 (250)
T PRK14240 226 FGDTVDLFT 234 (250)
T ss_pred eCCHHHHHh
Confidence 999998865
No 136
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.5e-36 Score=322.33 Aligned_cols=189 Identities=24% Similarity=0.389 Sum_probs=159.6
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|+++.|++ .++++| ||++++| +++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 1 i~~~~~~~~~~~--------~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 70 (211)
T cd03264 1 LQLENLTKRYGK--------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI-RIDGQDVLKQPQKL 70 (211)
T ss_pred CEEEEEEEEECC--------EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEE-EECCCccccchHHH
Confidence 478999999963 368999 9999999 999999999999999999999999999999 7776
Q ss_pred --EEEEEecCCCCCCC-cHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHH
Q 001091 660 --KKAYVPQSSWIQTG-TIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1159)
Q Consensus 660 --~iayv~Q~pwi~~g-TIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRI 729 (1159)
.++|++|+|.++.+ |++|||.+... .+ +++.+++++.+++.+..+ ....+||||||||+
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 139 (211)
T cd03264 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRV 139 (211)
T ss_pred HhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHH
Confidence 38999999998875 99999987421 11 234556666666654332 23468999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEeCCeEEEec
Q 001091 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 730 aLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~G 801 (1159)
+||||+.++|+++||||||++||+.+.+.+. +.++.+.+++|+|++||+++.+. .||++++|++|++++.|
T Consensus 140 ~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 140 GIAQALVGDPSILIVDEPTAGLDPEERIRFR-NLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999988765 45666666799999999999986 59999999999998765
No 137
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.6e-35 Score=325.82 Aligned_cols=197 Identities=22% Similarity=0.394 Sum_probs=166.1
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++++|++ .+++++ |+++++||.++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 2 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~i~~~~~~~ 72 (236)
T TIGR03864 2 LEVAGLSFAYGA--------RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQI-SVAGHDLRRAPRAA 72 (236)
T ss_pred EEEEeeEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCEEcccCChhh
Confidence 678999999963 368999 99999999999999999999999999999999999998 7766
Q ss_pred --EEEEEecCCCC-CCCcHHHHHhcCCC---CChH----HHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHH
Q 001091 660 --KKAYVPQSSWI-QTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1159)
Q Consensus 660 --~iayv~Q~pwi-~~gTIreNIlfG~~---~d~~----~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRI 729 (1159)
.++|++|++.+ ++.|++||+.++.. .+++ +.++.++..+| ......+..+||||||||+
T Consensus 73 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrl 141 (236)
T TIGR03864 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGL-----------AERADDKVRELNGGHRRRV 141 (236)
T ss_pred hhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhhhcCChhhCCHHHHHHH
Confidence 38999999987 67899999987532 2222 22233333333 3334566779999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHHH
Q 001091 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLI 807 (1159)
Q Consensus 730 aLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~ 807 (1159)
+||||+.++|+++||||||++||+.+.+.+.+ .+..+. +++|+|++||+++.++.||+|++|++|++++.|+.+++.
T Consensus 142 ~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 142 EIARALLHRPALLLLDEPTVGLDPASRAAIVA-HVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH-HHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999887754 566654 489999999999998889999999999999999999887
Q ss_pred h
Q 001091 808 A 808 (1159)
Q Consensus 808 ~ 808 (1159)
+
T Consensus 221 ~ 221 (236)
T TIGR03864 221 G 221 (236)
T ss_pred H
Confidence 6
No 138
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=9.1e-36 Score=322.53 Aligned_cols=190 Identities=31% Similarity=0.425 Sum_probs=158.3
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|++++|+. .++++| ||++++||.++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 1 i~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v-~~~g~~~~~~~~~~ 71 (213)
T cd03301 1 VELENVTKRFGN--------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI-YIGGRDVTDLPPKD 71 (213)
T ss_pred CEEEeeEEEECC--------eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCcCCccc
Confidence 468999999964 368999 99999999999999999999999999999999999998 7765
Q ss_pred -EEEEEecCCCCCC-CcHHHHHhcCCC---CCh----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHH
Q 001091 660 -KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1159)
Q Consensus 660 -~iayv~Q~pwi~~-gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIa 730 (1159)
.++|++|++.++. .|++||+.++.. .++ ++.++.++..++.+.. .....+||||||||++
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr~~ 140 (213)
T cd03301 72 RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLL-----------DRKPKQLSGGQRQRVA 140 (213)
T ss_pred ceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHH-----------hCChhhCCHHHHHHHH
Confidence 3899999999885 699999987632 222 2334445555554332 3445689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccc-cCEEEEEeCCeEEEec
Q 001091 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 731 LARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~G 801 (1159)
||||++++|+++||||||++||+++.+.+.+ .++.+. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 141 laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 141 LGRAIVREPKVFLMDEPLSNLDAKLRVQMRA-ELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999877654 565553 37999999999998765 9999999999999876
No 139
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-35 Score=332.80 Aligned_cols=201 Identities=27% Similarity=0.459 Sum_probs=169.3
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
..++++|++++|++. ..+++++ |+++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 6 ~~l~~~nl~~~~~~~------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I-~~~g~~i~~~~~ 78 (271)
T PRK13632 6 VMIKVENVSFSYPNS------ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI-KIDGITISKENL 78 (271)
T ss_pred eEEEEEeEEEEcCCC------CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEecCcCCH
Confidence 358999999999642 2568999 99999999999999999999999999999999999998 7765
Q ss_pred -----EEEEEecCC--CCCCCcHHHHHhcCCC---CChH----HHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHH
Q 001091 660 -----KKAYVPQSS--WIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1159)
Q Consensus 660 -----~iayv~Q~p--wi~~gTIreNIlfG~~---~d~~----~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQ 725 (1159)
.++||+|+| .+++.|++|||.++.. ++++ +.+++++..+|.+.+. .+..+|||||
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~ 147 (271)
T PRK13632 79 KEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLD-----------KEPQNLSGGQ 147 (271)
T ss_pred HHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CCcccCCHHH
Confidence 379999998 4667899999998632 3333 2445566666654433 3457999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-C-CcEEEEEccCcccccccCEEEEEeCCeEEEecCh
Q 001091 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1159)
Q Consensus 726 KQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~-~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~ 803 (1159)
|||++||||+.++|+++||||||++||+.+.+.+++ .+..+. + ++|+|++||+++.+..||+|++|++|++++.|+.
T Consensus 148 ~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~-~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~ 226 (271)
T PRK13632 148 KQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKK-IMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKP 226 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCH
Confidence 999999999999999999999999999999877654 565554 3 5899999999999888999999999999999999
Q ss_pred HHHHh
Q 001091 804 EDLIA 808 (1159)
Q Consensus 804 ~eL~~ 808 (1159)
+++.+
T Consensus 227 ~~~~~ 231 (271)
T PRK13632 227 KEILN 231 (271)
T ss_pred HHHhc
Confidence 88875
No 140
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.1e-35 Score=322.07 Aligned_cols=187 Identities=33% Similarity=0.502 Sum_probs=156.4
Q ss_pred EeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------EEEE
Q 001091 593 IEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------KKAY 663 (1159)
Q Consensus 593 ~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------~iay 663 (1159)
++|++++|+. .+++++ |+++++||.++|+||+|||||||+++|.|+++|.+|+| .++| .++|
T Consensus 2 ~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~i~~ 72 (213)
T cd03235 2 VEDLTVSYGG--------HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSI-RVFGKPLEKERKRIGY 72 (213)
T ss_pred cccceeEECC--------EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE-EECCccHHHHHhheEE
Confidence 6788999863 358999 99999999999999999999999999999999999999 8887 3899
Q ss_pred EecCCCC---CCCcHHHHHhcCCCC-----------ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHH
Q 001091 664 VPQSSWI---QTGTIRENILFGKDM-----------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1159)
Q Consensus 664 v~Q~pwi---~~gTIreNIlfG~~~-----------d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRI 729 (1159)
++|+|.+ ++.|++|||.++... ++++.+++++.+++.+.++. ...+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHH
Confidence 9999876 568999999876421 12456667777777644432 3458999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeEEEec
Q 001091 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 730 aLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~G 801 (1159)
+||||+.++|+++||||||++||+.+.+.+.+ .+..+. +++|+|++||+++.+.. ||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYE-LLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999877654 565544 68999999999999865 9999999986 55544
No 141
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-35 Score=325.33 Aligned_cols=196 Identities=28% Similarity=0.361 Sum_probs=162.9
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|+++.|+... ...+++++ ||++++||+++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 5 ~l~~~~l~~~~~~~~----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~i~~~~~~ 79 (233)
T PRK11629 5 LLQCDNLCKRYQEGS----VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV-IFNGQPMSKLSSA 79 (233)
T ss_pred eEEEEeEEEEcCCCC----cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEcCcCCHH
Confidence 489999999997430 12468999 99999999999999999999999999999999999998 7765
Q ss_pred --------EEEEEecCCCCCCC-cHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCH
Q 001091 660 --------KKAYVPQSSWIQTG-TIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1159)
Q Consensus 660 --------~iayv~Q~pwi~~g-TIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSG 723 (1159)
.++|++|+|.++.. |++||+.++.. .+ +++.+++++.++|.+. ......+|||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSg 148 (233)
T PRK11629 80 AKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR-----------ANHRPSELSG 148 (233)
T ss_pred HHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCH
Confidence 38999999988865 99999987421 22 2344556666655432 3345578999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccccCEEEEEeCCeEEEec
Q 001091 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 724 GQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~G 801 (1159)
|||||++||||+..+|+++||||||++||+.+.+.+. +.+..+. +|+|+|++||+++.+..+|++++|++|+|++.|
T Consensus 149 G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~ 227 (233)
T PRK11629 149 GERQRVAIARALVNNPRLVLADEPTGNLDARNADSIF-QLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAEL 227 (233)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999977665 4566553 489999999999999889999999999999877
Q ss_pred C
Q 001091 802 K 802 (1159)
Q Consensus 802 t 802 (1159)
+
T Consensus 228 ~ 228 (233)
T PRK11629 228 S 228 (233)
T ss_pred c
Confidence 5
No 142
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-35 Score=327.87 Aligned_cols=202 Identities=23% Similarity=0.336 Sum_probs=171.7
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC-----CCCcEEEECC----
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~-----~~G~i~~v~g---- 659 (1159)
-++++|+++.|+. .+.++| |+++++||+++|+|++|||||||+++|.|..+| .+|+| .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i-~~~g~~i~ 74 (251)
T PRK14270 4 KMESKNLNLWYGE--------KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEV-LLDGKNIY 74 (251)
T ss_pred EEEEEEeEEEECC--------eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEE-EECCEecc
Confidence 4889999999963 358999 999999999999999999999999999999875 78998 7654
Q ss_pred -----------EEEEEecCCCCCCCcHHHHHhcCCCC----C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 -----------~iayv~Q~pwi~~gTIreNIlfG~~~----d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.++|++|++.+++.|++||+.|+... + +++.+++++.++|.++++. ....+...
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~ 147 (251)
T PRK14270 75 DKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALK 147 (251)
T ss_pred cccccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCccc
Confidence 38999999999999999999986421 1 2344567777777544432 23456779
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeCCeEEE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e 799 (1159)
||||||||++||||++++|+++|||||||+||+.+.+.+. +.+..+.+++|+|+|||+++.++. ||+|++|++|++++
T Consensus 148 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~ 226 (251)
T PRK14270 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIE-DLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIE 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEE
Confidence 9999999999999999999999999999999999987764 467666667999999999998765 99999999999999
Q ss_pred ecChHHHHh
Q 001091 800 SGKYEDLIA 808 (1159)
Q Consensus 800 ~Gt~~eL~~ 808 (1159)
.|+.+++..
T Consensus 227 ~~~~~~~~~ 235 (251)
T PRK14270 227 FNKTEKIFL 235 (251)
T ss_pred eCCHHHHhc
Confidence 999999875
No 143
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-35 Score=330.93 Aligned_cols=203 Identities=23% Similarity=0.332 Sum_probs=168.5
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc-----CCCCcEEEECC---
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~-----~~~G~i~~v~g--- 659 (1159)
..++++|++++|++ .+++++ |+++++||+++|+|++|||||||+++|.|+.+ |.+|+| .++|
T Consensus 20 ~~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 90 (268)
T PRK14248 20 HILEVKDLSIYYGE--------KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEI-LYEGLNI 90 (268)
T ss_pred ceEEEEEEEEEeCC--------ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEE-EECCEEc
Confidence 45899999999963 368999 99999999999999999999999999999864 689998 6654
Q ss_pred ------------EEEEEecCCCCCCCcHHHHHhcCCCCC--------hHHHHHHHHHhccchHHHhccCCCCccccCCCC
Q 001091 660 ------------KKAYVPQSSWIQTGTIRENILFGKDMR--------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1159)
Q Consensus 660 ------------~iayv~Q~pwi~~gTIreNIlfG~~~d--------~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~ 719 (1159)
.++|++|++.++++|++||+.++..+. +++.+++++.+++..++. ...+....
T Consensus 91 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 163 (268)
T PRK14248 91 LDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSAL 163 (268)
T ss_pred ccccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcc
Confidence 489999999999999999999763211 122334444455433221 23456678
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEeCCeEE
Q 001091 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1159)
Q Consensus 720 ~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~ 798 (1159)
+||||||||++||||++++|+++||||||++||+.+.+.+ .+.++.+.+++|+|++||+++.+. .||+|++|++|+++
T Consensus 164 ~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 242 (268)
T PRK14248 164 SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKI-EELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLV 242 (268)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHH-HHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999998766 456766666789999999999875 59999999999999
Q ss_pred EecChHHHHh
Q 001091 799 QSGKYEDLIA 808 (1159)
Q Consensus 799 e~Gt~~eL~~ 808 (1159)
+.|+.+++..
T Consensus 243 ~~~~~~~~~~ 252 (268)
T PRK14248 243 EYDQTEQIFT 252 (268)
T ss_pred EeCCHHHHHh
Confidence 9999998876
No 144
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-35 Score=332.09 Aligned_cols=204 Identities=27% Similarity=0.413 Sum_probs=171.5
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC-----CCCcEEEECC--
Q 001091 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG-- 659 (1159)
Q Consensus 588 ~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~-----~~G~i~~v~g-- 659 (1159)
...++++|++++|++ .++++| ||++++||+++|+|++|||||||+++|.|.+++ .+|+| .++|
T Consensus 23 ~~~l~~~nl~~~~~~--------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i-~i~g~~ 93 (272)
T PRK14236 23 QTALEVRNLNLFYGD--------KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEI-RLDGQN 93 (272)
T ss_pred CcEEEEEEEEEEECC--------eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEE-EECCEE
Confidence 346999999999963 368999 999999999999999999999999999999874 79998 6654
Q ss_pred -------------EEEEEecCCCCCCCcHHHHHhcCCCC----C----hHHHHHHHHHhccchHHHhccCCCCccccCCC
Q 001091 660 -------------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1159)
Q Consensus 660 -------------~iayv~Q~pwi~~gTIreNIlfG~~~----d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G 718 (1159)
.++|++|++.++++|++|||.++..+ . +++.+++++..++.+++. +..+.++
T Consensus 94 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~ 166 (272)
T PRK14236 94 IYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENA 166 (272)
T ss_pred CcccccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCc
Confidence 47999999999999999999876321 1 123455556566654433 2446778
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEeCCeE
Q 001091 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1159)
Q Consensus 719 ~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I 797 (1159)
.+||||||||++||||++++|+++||||||++||+.+.+.+ .+.+..+.+++|+|++||+++.+. .||+|++|++|+|
T Consensus 167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l-~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i 245 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKI-EELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKL 245 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEE
Confidence 89999999999999999999999999999999999997665 556766666899999999999875 5999999999999
Q ss_pred EEecChHHHHh
Q 001091 798 EQSGKYEDLIA 808 (1159)
Q Consensus 798 ~e~Gt~~eL~~ 808 (1159)
++.|+++++.+
T Consensus 246 ~~~g~~~~~~~ 256 (272)
T PRK14236 246 VEYGDTDTLFT 256 (272)
T ss_pred EecCCHHHHhc
Confidence 99999998865
No 145
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.2e-36 Score=311.19 Aligned_cols=199 Identities=26% Similarity=0.417 Sum_probs=169.2
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.|+++|++-.|+++ ...|++ |++|++||.|||+|++||||||||++|.|..+|++|+| .++|
T Consensus 3 ~i~~~nl~k~yp~~-------~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i-~~~g~~i~~~~~k 74 (258)
T COG3638 3 MIEVKNLSKTYPGG-------HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI-LFNGVQITKLKGK 74 (258)
T ss_pred eEEEeeeeeecCCC-------ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceE-EecccchhccchH
Confidence 58999999999854 678999 99999999999999999999999999999999999999 8876
Q ss_pred -------EEEEEecCCCC-CCCcHHHHHhcCCC------------CChHHHHHHHHH---hccchHHHhccCCCCccccC
Q 001091 660 -------KKAYVPQSSWI-QTGTIRENILFGKD------------MRQSFYEEVLEG---CALNQDIEMWADGDLSVVGE 716 (1159)
Q Consensus 660 -------~iayv~Q~pwi-~~gTIreNIlfG~~------------~d~~~y~~vl~a---c~L~~dl~~lp~Gd~T~IGe 716 (1159)
++||++|++-| ...|+-+|++.|+- +.++....++++ .++.+. .-.
T Consensus 75 ~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~-----------A~q 143 (258)
T COG3638 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDK-----------AYQ 143 (258)
T ss_pred HHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHH-----------HHH
Confidence 48999999876 66799999998852 344444444443 233221 235
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh--cCCcEEEEEccCcccc-cccCEEEEEe
Q 001091 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL--LSQKTVLYTTHQLEFL-DAADLVLVMK 793 (1159)
Q Consensus 717 ~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~--l~~kTvIlVTH~l~~l-~~aD~Iivl~ 793 (1159)
|-.+|||||+|||+|||||+++|+|+|=|||+++|||.+++++++- ++.+ -.|.|+|+.-|++++. ++||||+-|+
T Consensus 144 ra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~-l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~ 222 (258)
T COG3638 144 RASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDI-LKDINQEDGITVIVNLHQVDLAKKYADRIIGLK 222 (258)
T ss_pred HhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHH-HHHHHHHcCCEEEEEechHHHHHHHHhhheEec
Confidence 6789999999999999999999999999999999999999998764 4433 3589999999999996 5699999999
Q ss_pred CCeEEEecChHHHHh
Q 001091 794 DGKIEQSGKYEDLIA 808 (1159)
Q Consensus 794 ~G~I~e~Gt~~eL~~ 808 (1159)
+|+|+..|+.+|+-+
T Consensus 223 ~G~ivfDg~~~el~~ 237 (258)
T COG3638 223 AGRIVFDGPASELTD 237 (258)
T ss_pred CCcEEEeCChhhhhH
Confidence 999999999999644
No 146
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.6e-35 Score=321.78 Aligned_cols=194 Identities=23% Similarity=0.377 Sum_probs=159.8
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++++|+... ...+++++ |+++++||.++|+|++|||||||+++|.|+++|++|+| .++|
T Consensus 2 l~~~~v~~~~~~~~----~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 76 (218)
T cd03266 2 ITADALTKRFRDVK----KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFA-TVDGFDVVKEPAEA 76 (218)
T ss_pred eEEEEEEEecCCCC----ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceE-EECCEEcccCHHHH
Confidence 67899999997430 11268999 99999999999999999999999999999999999999 7876
Q ss_pred --EEEEEecCCCCCCC-cHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHH
Q 001091 660 --KKAYVPQSSWIQTG-TIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1159)
Q Consensus 660 --~iayv~Q~pwi~~g-TIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRI 729 (1159)
.++|++|+|.++.. |++|||.+... .+ +++.++.++..++.+. ...+..+||||||||+
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv 145 (218)
T cd03266 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEEL-----------LDRRVGGFSTGMRQKV 145 (218)
T ss_pred HhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------HhhhhhhcCHHHHHHH
Confidence 48999999998885 99999976432 11 2334455555555332 3456678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeCCeEEEec
Q 001091 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 730 aLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~G 801 (1159)
+||||++.+|+++||||||++||+.+.+.+. +.++.+. +++|+|++||+++.++ .||+|++|++|++++.|
T Consensus 146 ~laral~~~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 146 AIARALVHDPPVLLLDEPTTGLDVMATRALR-EFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHhcCCCEEEEcCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999977665 4565553 4899999999999875 49999999999998765
No 147
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=329.21 Aligned_cols=201 Identities=22% Similarity=0.370 Sum_probs=167.0
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc-----CCCCcEEEECC-----
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG----- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~-----~~~G~i~~v~g----- 659 (1159)
-+++|+++.|++ .+.+++ ||++++||+++|+|++|||||||+++|.|..+ |.+|+| .++|
T Consensus 6 ~~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~i~~ 76 (251)
T PRK14244 6 ASVKNLNLWYGS--------KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGEL-DIDGIDVYS 76 (251)
T ss_pred EEeeeEEEEECC--------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEE-EECCEehHh
Confidence 468899999963 468999 99999999999999999999999999999986 469998 7755
Q ss_pred ----------EEEEEecCCCCCCCcHHHHHhcCCCC-----Ch----HHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 ----------KKAYVPQSSWIQTGTIRENILFGKDM-----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 ----------~iayv~Q~pwi~~gTIreNIlfG~~~-----d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.++|++|++.++++|++|||.++... +. ++.+++++..+|.+++. +..+..+.+
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 149 (251)
T PRK14244 77 VDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFE 149 (251)
T ss_pred cccchHHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhh
Confidence 37999999999999999999876321 11 22334455555543322 234556789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeCCeEEE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e 799 (1159)
||||||||++||||++++|+++||||||++||+.+.+.+ .+.+..+.+++|+|++||+++.+.. ||+|++|++|++++
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 228 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVI-ENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVE 228 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999987765 4567666678999999999999865 99999999999999
Q ss_pred ecChHHHHh
Q 001091 800 SGKYEDLIA 808 (1159)
Q Consensus 800 ~Gt~~eL~~ 808 (1159)
.|+.+++.+
T Consensus 229 ~~~~~~~~~ 237 (251)
T PRK14244 229 YNTTQEIFK 237 (251)
T ss_pred eCCHHHHhc
Confidence 999999876
No 148
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-35 Score=328.75 Aligned_cols=203 Identities=24% Similarity=0.389 Sum_probs=171.5
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc-----CCCCcEEEECC---
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~-----~~~G~i~~v~g--- 659 (1159)
..|+++|++++|++ .++++| |+++++||+++|+|++|||||||+++|.|.++ |.+|+| .++|
T Consensus 9 ~~l~i~~v~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 79 (264)
T PRK14243 9 TVLRTENLNVYYGS--------FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKV-TFHGKNL 79 (264)
T ss_pred eEEEEeeeEEEECC--------EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEE-EECCEEc
Confidence 35899999999963 368999 99999999999999999999999999999876 378998 7655
Q ss_pred ------------EEEEEecCCCCCCCcHHHHHhcCCCC---C---hHHHHHHHHHhccchHHHhccCCCCccccCCCCCC
Q 001091 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM---R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1159)
Q Consensus 660 ------------~iayv~Q~pwi~~gTIreNIlfG~~~---d---~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~L 721 (1159)
+++|++|++.+++.|++|||.++... . +++.+++++.+++.++++. ..+..+.+|
T Consensus 80 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~L 152 (264)
T PRK14243 80 YAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSL 152 (264)
T ss_pred cccccChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccC
Confidence 38999999999989999999986432 1 2344556666776555432 235677899
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEe-------
Q 001091 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMK------- 793 (1159)
Q Consensus 722 SGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~------- 793 (1159)
|||||||++||||++++|+++||||||++||+++.+.+ .+.+..+.+++|+|++||+++.++ .||+|++|+
T Consensus 153 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~ 231 (264)
T PRK14243 153 SGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRI-EELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGG 231 (264)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeccccccc
Confidence 99999999999999999999999999999999998765 456777666789999999999875 599999998
Q ss_pred --CCeEEEecChHHHHh
Q 001091 794 --DGKIEQSGKYEDLIA 808 (1159)
Q Consensus 794 --~G~I~e~Gt~~eL~~ 808 (1159)
+|+|++.|+.+|+.+
T Consensus 232 ~~~g~i~~~~~~~~~~~ 248 (264)
T PRK14243 232 GRYGYLVEFDRTEKIFN 248 (264)
T ss_pred ccCceEEEeCCHHHHHh
Confidence 899999999999976
No 149
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-35 Score=329.28 Aligned_cols=204 Identities=23% Similarity=0.359 Sum_probs=170.1
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc-----CCCCcEEEECC--
Q 001091 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG-- 659 (1159)
Q Consensus 588 ~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~-----~~~G~i~~v~g-- 659 (1159)
+..++++|++++|+. .+++++ ||+|++||+++|+||+|||||||+++|.|.++ |++|+| .++|
T Consensus 11 ~~~l~i~nl~~~~~~--------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v-~~~g~~ 81 (269)
T PRK14259 11 NIIISLQNVTISYGT--------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRV-LFDGTD 81 (269)
T ss_pred CceEEEEeEEEEECC--------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-EECCEE
Confidence 346999999999963 358999 99999999999999999999999999999987 589998 7665
Q ss_pred -------------EEEEEecCCCCCCCcHHHHHhcCCCC---C---hHHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 -------------KKAYVPQSSWIQTGTIRENILFGKDM---R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 -------------~iayv~Q~pwi~~gTIreNIlfG~~~---d---~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.++|++|+|.++..|++||+.++... + +++.+++++.+++...++ +.......+
T Consensus 82 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~ 154 (269)
T PRK14259 82 LYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYS 154 (269)
T ss_pred cccccCCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCccc
Confidence 38999999999989999999987532 1 233445555555533222 234566789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEeC-----
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKD----- 794 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~~----- 794 (1159)
||||||||++||||++++|+++||||||++||+.+.+++. +.++.+.+++|+|++||+++.+. .||+|++|++
T Consensus 155 LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~ 233 (269)
T PRK14259 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIE-ETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEG 233 (269)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEecccccc
Confidence 9999999999999999999999999999999999987765 46666666899999999999875 5999999996
Q ss_pred ------CeEEEecChHHHHh
Q 001091 795 ------GKIEQSGKYEDLIA 808 (1159)
Q Consensus 795 ------G~I~e~Gt~~eL~~ 808 (1159)
|++++.|+.+++.+
T Consensus 234 ~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 234 GSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred ccccccceEEEeCCHHHHHh
Confidence 67999999999876
No 150
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-35 Score=326.28 Aligned_cols=202 Identities=25% Similarity=0.327 Sum_probs=167.1
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC-----CCCcEEEECC----
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~-----~~G~i~~v~g---- 659 (1159)
.++++|++++|++ .+++++ ||++++||.++|+||+|||||||+++|.|+++| .+|+| .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~i~ 73 (250)
T PRK14247 3 KIEIRDLKVSFGQ--------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEV-YLDGQDIF 73 (250)
T ss_pred eEEEEeeEEEECC--------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEE-EECCEECC
Confidence 4889999999963 358999 999999999999999999999999999999974 69998 7765
Q ss_pred ---------EEEEEecCCCC-CCCcHHHHHhcCCCC-----C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 ---------KKAYVPQSSWI-QTGTIRENILFGKDM-----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 ---------~iayv~Q~pwi-~~gTIreNIlfG~~~-----d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.++|++|+|-+ ++.|++||+.++... + +++.++.++.++|.+.++ ........+
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 146 (250)
T PRK14247 74 KMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGK 146 (250)
T ss_pred cCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCccc
Confidence 38999999864 578999999876421 1 123345556666543221 122345678
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEeCCeEEE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e 799 (1159)
||||||||++||||+.++|+++||||||++||+.+.+.+.+ .+..+.+++|+|++||+++.+. .||+|++|++|++++
T Consensus 147 LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14247 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIES-LFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVE 225 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEE
Confidence 99999999999999999999999999999999999877654 5666656899999999999875 599999999999999
Q ss_pred ecChHHHHh
Q 001091 800 SGKYEDLIA 808 (1159)
Q Consensus 800 ~Gt~~eL~~ 808 (1159)
.|+.+++.+
T Consensus 226 ~g~~~~~~~ 234 (250)
T PRK14247 226 WGPTREVFT 234 (250)
T ss_pred ECCHHHHHc
Confidence 999999876
No 151
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-35 Score=327.64 Aligned_cols=202 Identities=24% Similarity=0.338 Sum_probs=166.8
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC-----CCCcEEEECC----
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~-----~~G~i~~v~g---- 659 (1159)
.++++|++++|+. .++++| |+++++||+++|+||+|||||||+++|.|+++| .+|+| .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i-~~~g~~i~ 74 (253)
T PRK14267 4 AIETVNLRVYYGS--------NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEV-RLFGRNIY 74 (253)
T ss_pred eEEEEeEEEEeCC--------eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE-EECCEEcc
Confidence 4889999999963 368999 999999999999999999999999999999987 49998 7654
Q ss_pred -----------EEEEEecCCCCCCC-cHHHHHhcCCCC-----Ch----HHHHHHHHHhccchHHHhccCCCCccccCCC
Q 001091 660 -----------KKAYVPQSSWIQTG-TIRENILFGKDM-----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1159)
Q Consensus 660 -----------~iayv~Q~pwi~~g-TIreNIlfG~~~-----d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G 718 (1159)
.++|++|++.++.. |++||+.++... +. ++.+++++..+|.++++ .......
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~ 147 (253)
T PRK14267 75 SPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYP 147 (253)
T ss_pred ccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccCh
Confidence 37999999998865 999999876321 11 22334444444433322 1235567
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEeCCeE
Q 001091 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1159)
Q Consensus 719 ~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I 797 (1159)
.+||||||||++||||++++|+++||||||++||+.+.+.+. +.+..+.+++|+|++||+++.+. .||+|++|++|++
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 226 (253)
T PRK14267 148 SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIE-ELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKL 226 (253)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEE
Confidence 899999999999999999999999999999999999987665 45666656799999999999875 5999999999999
Q ss_pred EEecChHHHHh
Q 001091 798 EQSGKYEDLIA 808 (1159)
Q Consensus 798 ~e~Gt~~eL~~ 808 (1159)
++.|+.+++.+
T Consensus 227 ~~~~~~~~~~~ 237 (253)
T PRK14267 227 IEVGPTRKVFE 237 (253)
T ss_pred EEeCCHHHHHh
Confidence 99999999876
No 152
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-35 Score=319.06 Aligned_cols=188 Identities=27% Similarity=0.416 Sum_probs=159.0
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|++++|++. . .| |+++++||+++|+||+|||||||+++|+|+++|.+|+| .++|
T Consensus 1 i~~~~l~~~~~~~--------~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i-~~~g~~~~~~~~~~ 69 (211)
T cd03298 1 VRLDKIRFSYGEQ--------P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV-LINGVDVTAAPPAD 69 (211)
T ss_pred CEEEeEEEEeCCE--------e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcCcCCHhH
Confidence 4789999999632 1 28 99999999999999999999999999999999999999 8877
Q ss_pred -EEEEEecCCCCCCC-cHHHHHhcCCC-------CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHH
Q 001091 660 -KKAYVPQSSWIQTG-TIRENILFGKD-------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1159)
Q Consensus 660 -~iayv~Q~pwi~~g-TIreNIlfG~~-------~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIa 730 (1159)
.++|++|+|.++.+ |++||+.++.. .++++.+++++.++|.+.....| .+||||||||++
T Consensus 70 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ 138 (211)
T cd03298 70 RPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVA 138 (211)
T ss_pred ccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHH
Confidence 38999999999875 99999987642 12345667777777765544433 489999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccc-cCEEEEEeCCeEEEec
Q 001091 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 731 LARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~G 801 (1159)
||||++++|+++||||||++||+++.+.+. +.++.+. +++|+|++||+++.++. ||+|++|++|++++.|
T Consensus 139 ia~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 139 LARVLVRDKPVLLLDEPFAALDPALRAEML-DLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999987664 4566654 37999999999999865 9999999999998764
No 153
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-35 Score=327.13 Aligned_cols=202 Identities=26% Similarity=0.373 Sum_probs=168.6
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC-----CCCcEEEECC----
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~-----~~G~i~~v~g---- 659 (1159)
.|+++|+++.|++ .+.|+| ||++++||+++|+||+|||||||+++|.|..++ ++|+| .++|
T Consensus 6 ~i~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~~~ 76 (253)
T PRK14261 6 ILSTKNLNLWYGE--------KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDI-LYNGENIM 76 (253)
T ss_pred eEEEeeeEEEECC--------eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE-EECCEEcc
Confidence 5899999999963 368999 999999999999999999999999999998753 48988 6654
Q ss_pred -----------EEEEEecCCCCCCCcHHHHHhcCCCC----Ch----HHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 -----------~iayv~Q~pwi~~gTIreNIlfG~~~----d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.++|++|+|.+++.|++|||.|+... +. ++..++++..++.+++. +..++.+.+
T Consensus 77 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~ 149 (253)
T PRK14261 77 DSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK-------DRLHDSALS 149 (253)
T ss_pred ccccchhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH-------HHhhcChhh
Confidence 38999999999999999999987432 11 12233444444443332 345678889
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEeCCeEEE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e 799 (1159)
||||||||++||||++++|+++||||||++||+.+.+.+ .+.+..+.+++|+|++||+++.++ .||+|++|++|++++
T Consensus 150 LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l-~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~ 228 (253)
T PRK14261 150 LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKI-EDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIE 228 (253)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998766 456766666799999999999986 599999999999999
Q ss_pred ecChHHHHh
Q 001091 800 SGKYEDLIA 808 (1159)
Q Consensus 800 ~Gt~~eL~~ 808 (1159)
.|+.+++.+
T Consensus 229 ~g~~~~~~~ 237 (253)
T PRK14261 229 FDKTTQIFE 237 (253)
T ss_pred cCCHHHHHh
Confidence 999998865
No 154
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-35 Score=330.72 Aligned_cols=201 Identities=27% Similarity=0.400 Sum_probs=170.3
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|++++|+.. ...+++++ |+++++||.++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 4 ~l~~~~l~~~~~~~-----~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~i~~~~~~ 77 (277)
T PRK13642 4 ILEVENLVFKYEKE-----SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV-KIDGELLTAENVW 77 (277)
T ss_pred eEEEEEEEEEcCCC-----CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEE-EECCEECCcCCHH
Confidence 48999999999743 23468999 99999999999999999999999999999999999999 8876
Q ss_pred ----EEEEEecCC--CCCCCcHHHHHhcCCC---CCh----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHH
Q 001091 660 ----KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1159)
Q Consensus 660 ----~iayv~Q~p--wi~~gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQK 726 (1159)
.++|++|+| -+++.|+.|||.++.. ..+ ++.+++++.++|.+..+ .....||||||
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~ 146 (277)
T PRK13642 78 NLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKT-----------REPARLSGGQK 146 (277)
T ss_pred HHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHH
Confidence 379999998 3778999999987632 222 34456666666653322 24568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccccccCEEEEEeCCeEEEecChH
Q 001091 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1159)
Q Consensus 727 QRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~ 804 (1159)
||++||||+.++|+++||||||++||+.+.+.+. +.++.+.+ |+|+|++||+++.+..||+|++|++|++++.|+++
T Consensus 147 qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (277)
T PRK13642 147 QRVAVAGIIALRPEIIILDESTSMLDPTGRQEIM-RVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPS 225 (277)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999987765 45665543 79999999999999889999999999999999999
Q ss_pred HHHh
Q 001091 805 DLIA 808 (1159)
Q Consensus 805 eL~~ 808 (1159)
++.+
T Consensus 226 ~~~~ 229 (277)
T PRK13642 226 ELFA 229 (277)
T ss_pred HHhc
Confidence 9876
No 155
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-35 Score=330.04 Aligned_cols=203 Identities=20% Similarity=0.346 Sum_probs=168.8
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc-----CCCCcEEEECC---
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~-----~~~G~i~~v~g--- 659 (1159)
..++++|+++.|++ .++++| ||+|++||+++|+|++|||||||+++|.|.++ |++|+| .++|
T Consensus 23 ~~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i-~~~g~~~ 93 (271)
T PRK14238 23 VVFDTQNLNLWYGE--------DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKI-LYRDQNI 93 (271)
T ss_pred eEEEEeeeEEEECC--------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeE-EECCEEc
Confidence 35999999999963 358999 99999999999999999999999999999987 699998 7765
Q ss_pred ------------EEEEEecCCCCCCCcHHHHHhcCCC---C-ChHH----HHHHHHHhccchHHHhccCCCCccccCCCC
Q 001091 660 ------------KKAYVPQSSWIQTGTIRENILFGKD---M-RQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1159)
Q Consensus 660 ------------~iayv~Q~pwi~~gTIreNIlfG~~---~-d~~~----y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~ 719 (1159)
.++|++|+|.++..|++|||.++.. . +++. ..++++..++.+++. ......+.
T Consensus 94 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~ 166 (271)
T PRK14238 94 FDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAY 166 (271)
T ss_pred ccccccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcc
Confidence 3899999999999999999987632 1 1111 123333333322332 33456788
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEeCCeEE
Q 001091 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1159)
Q Consensus 720 ~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~ 798 (1159)
+||||||||++||||++++|+++||||||++||+.+.+.+. +.+..+.+++|+|++||+++.+. .||+|++|++|+++
T Consensus 167 ~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~ 245 (271)
T PRK14238 167 GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVE-ELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVN 245 (271)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999987665 46777666899999999999976 59999999999999
Q ss_pred EecChHHHHh
Q 001091 799 QSGKYEDLIA 808 (1159)
Q Consensus 799 e~Gt~~eL~~ 808 (1159)
+.|+++++.+
T Consensus 246 ~~g~~~~~~~ 255 (271)
T PRK14238 246 EYDDTDKIFS 255 (271)
T ss_pred EeCCHHHHHc
Confidence 9999999876
No 156
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2.1e-35 Score=342.11 Aligned_cols=192 Identities=31% Similarity=0.476 Sum_probs=160.6
Q ss_pred cccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------------------EEEEEecCC
Q 001091 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------------------KKAYVPQSS 668 (1159)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------------------~iayv~Q~p 668 (1159)
...++| ||++++||+++|+|++|||||||+++|.|+++|++|+| .++| .++||+|++
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I-~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSV-LVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE-EECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 457899 99999999999999999999999999999999999999 8875 389999999
Q ss_pred CCCC-CcHHHHHhcCCCC---C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 001091 669 WIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1159)
Q Consensus 669 wi~~-gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~ 740 (1159)
.+++ .|++|||.||..+ + +++.+++++..+|.+..+. ...+||||||||++||||++++|+
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~-----------~~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADK-----------KPGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9987 7999999987532 2 2344566666666544332 345799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccc-cccCEEEEEeCCeEEEecChHHHHhhcchHHH
Q 001091 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815 (1159)
Q Consensus 741 I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~ 815 (1159)
|+||||||||||+.+.+.+.+ .+..+.+ ++|+|+|||+++.+ +.||+|++|++|++++.|+.+|+..+....|.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~-~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~ 261 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQD-ELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYV 261 (382)
T ss_pred EEEEECCCccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHH
Confidence 999999999999999887755 4555443 89999999999986 56999999999999999999999863333333
No 157
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=2.1e-35 Score=323.99 Aligned_cols=197 Identities=26% Similarity=0.395 Sum_probs=163.2
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++++|++ .+++++ |+++++|++++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~ 71 (232)
T cd03218 1 LRAENLSKRYGK--------RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKI-LLDGQDITKLPMHK 71 (232)
T ss_pred CeEEEEEEEeCC--------EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEecccCCHhH
Confidence 468999999963 368999 99999999999999999999999999999999999998 7765
Q ss_pred ----EEEEEecCCCCCCC-cHHHHHhcCCCC---Ch----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHH
Q 001091 660 ----KKAYVPQSSWIQTG-TIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1159)
Q Consensus 660 ----~iayv~Q~pwi~~g-TIreNIlfG~~~---d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQ 727 (1159)
.++|++|++.++.+ |++||+.++.+. ++ ++.++.++..++ .........+|||||||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~q 140 (232)
T cd03218 72 RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHI-----------THLRKSKASSLSGGERR 140 (232)
T ss_pred HHhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHH
Confidence 38999999988876 999999875421 11 122333333333 33345566799999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeCCeEEEecChHH
Q 001091 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYED 805 (1159)
Q Consensus 728 RIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~e 805 (1159)
|++||||+..+|+++||||||++||+.+.+.+.+ .++.+. +++|+|++||+++.+. .||+|++|++|++++.|+.++
T Consensus 141 rl~la~al~~~p~llllDEPt~~LD~~~~~~~~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 219 (232)
T cd03218 141 RVEIARALATNPKFLLLDEPFAGVDPIAVQDIQK-IIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEE 219 (232)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHH
Confidence 9999999999999999999999999999776654 565554 4899999999998765 599999999999999999988
Q ss_pred HHh
Q 001091 806 LIA 808 (1159)
Q Consensus 806 L~~ 808 (1159)
+..
T Consensus 220 ~~~ 222 (232)
T cd03218 220 IAA 222 (232)
T ss_pred hhc
Confidence 764
No 158
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.1e-35 Score=322.46 Aligned_cols=196 Identities=24% Similarity=0.385 Sum_probs=164.1
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
..|+++|+++.|++ .++++| |+++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 6 ~~i~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~ 76 (225)
T PRK10247 6 PLLQLQNVGYLAGD--------AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL-LFEGEDISTLKP 76 (225)
T ss_pred ceEEEeccEEeeCC--------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE-EECCEEcCcCCH
Confidence 35999999999963 368999 99999999999999999999999999999999999999 7776
Q ss_pred -----EEEEEecCCCCCCCcHHHHHhcCCCC-----ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHH
Q 001091 660 -----KKAYVPQSSWIQTGTIRENILFGKDM-----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1159)
Q Consensus 660 -----~iayv~Q~pwi~~gTIreNIlfG~~~-----d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRI 729 (1159)
.++|++|+|.+++.|++||+.++..+ ++++.++.++..++.+ +.......+||||||||+
T Consensus 77 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv 146 (225)
T PRK10247 77 EIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRI 146 (225)
T ss_pred HHHHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHH
Confidence 38999999999999999999875321 2233445555554432 233566789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccccCEEEEEe-CCeEEEecChH
Q 001091 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMK-DGKIEQSGKYE 804 (1159)
Q Consensus 730 aLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~aD~Iivl~-~G~I~e~Gt~~ 804 (1159)
+||||++++|+++||||||++||+.+.+.+ .+++..+. +++|+|++||+++.++.||+|++|+ ++..+++|+|+
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 147 SLIRNLQFMPKVLLLDEITSALDESNKHNV-NEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999997655 45666654 3789999999999998999999994 77778888885
No 159
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.8e-35 Score=324.63 Aligned_cols=197 Identities=29% Similarity=0.420 Sum_probs=164.6
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|+++.|++ .++++| |+++++||+++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 2 l~~~~l~~~~~~--------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 72 (240)
T PRK09493 2 IEFKNVSKHFGP--------TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL-IVDGLKVNDPKVDE 72 (240)
T ss_pred EEEEeEEEEECC--------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCcCChhH
Confidence 678999999963 358999 99999999999999999999999999999999999998 7765
Q ss_pred -----EEEEEecCCCCCC-CcHHHHHhcCCC----CCh----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHH
Q 001091 660 -----KKAYVPQSSWIQT-GTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1159)
Q Consensus 660 -----~iayv~Q~pwi~~-gTIreNIlfG~~----~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQ 725 (1159)
.++|++|++.++. .|++||+.++.. .+. ++..++++..+|++ ....+...|||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~ 141 (240)
T PRK09493 73 RLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAE-----------RAHHYPSELSGGQ 141 (240)
T ss_pred HHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChH-----------HHhcChhhcCHHH
Confidence 3799999998875 699999988631 222 23334444444432 2334557899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeEEEecCh
Q 001091 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1159)
Q Consensus 726 KQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~ 803 (1159)
|||++||||++++|++++|||||++||+++.+.+.+ .++.+. +++|+|++||+++.++. ||+|++|++|++++.|++
T Consensus 142 ~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 220 (240)
T PRK09493 142 QQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLK-VMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDP 220 (240)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCH
Confidence 999999999999999999999999999999876654 566554 48999999999999865 999999999999999999
Q ss_pred HHHHh
Q 001091 804 EDLIA 808 (1159)
Q Consensus 804 ~eL~~ 808 (1159)
+++.+
T Consensus 221 ~~~~~ 225 (240)
T PRK09493 221 QVLIK 225 (240)
T ss_pred HHHhc
Confidence 98865
No 160
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-35 Score=326.11 Aligned_cols=195 Identities=27% Similarity=0.340 Sum_probs=165.5
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
..|+++|++++|+. .+++++ ||++++||+++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 11 ~~l~i~~l~~~~~~--------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i-~~~g~~~~~~~~ 81 (257)
T PRK11247 11 TPLLLNAVSKRYGE--------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGTAPLAEARE 81 (257)
T ss_pred CcEEEEEEEEEECC--------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEHHHhhC
Confidence 45999999999963 368999 99999999999999999999999999999999999999 7776
Q ss_pred EEEEEecCCCCCC-CcHHHHHhcCCCC-ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHcc
Q 001091 660 KKAYVPQSSWIQT-GTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1159)
Q Consensus 660 ~iayv~Q~pwi~~-gTIreNIlfG~~~-d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~ 737 (1159)
.++|++|+|.++. .|++||+.++... .+++.++.++..+|.+.. ..+..+||||||||++||||+.+
T Consensus 82 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqkqrl~laraL~~ 150 (257)
T PRK11247 82 DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRA-----------NEWPAALSGGQKQRVALARALIH 150 (257)
T ss_pred ceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHhc
Confidence 4899999998876 7999999986421 234556666666665432 34567999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEeCCeEEEecChH
Q 001091 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYE 804 (1159)
Q Consensus 738 ~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~ 804 (1159)
+|+++||||||++||+.+.+.+.+ .+..+. .++|+|++||+++.+. .||+|++|++|+|++.|+.+
T Consensus 151 ~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 151 RPGLLLLDEPLGALDALTRIEMQD-LIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999776654 565553 3799999999999875 59999999999999988764
No 161
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-35 Score=329.14 Aligned_cols=200 Identities=24% Similarity=0.334 Sum_probs=168.0
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|++++|++. ..++++| |+++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 7 ~l~i~~l~~~~~~~------~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~~~~~~~~ 79 (269)
T PRK13648 7 IIVFKNVSFQYQSD------ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI-FYNNQAITDDNFE 79 (269)
T ss_pred eEEEEEEEEEcCCC------CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEECCcCCHH
Confidence 58999999999743 2468999 99999999999999999999999999999999999999 8876
Q ss_pred ----EEEEEecCCC--CCCCcHHHHHhcCCC---CCh----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHH
Q 001091 660 ----KKAYVPQSSW--IQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1159)
Q Consensus 660 ----~iayv~Q~pw--i~~gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQK 726 (1159)
.++|++|+|+ +++.|+++|+.|+.. .+. ++.+++++..++.+.. ..+..+||||||
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~ 148 (269)
T PRK13648 80 KLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQK 148 (269)
T ss_pred HHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHH
Confidence 3799999995 567799999998743 122 2333445555544322 234578999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccccCEEEEEeCCeEEEecChH
Q 001091 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1159)
Q Consensus 727 QRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~ 804 (1159)
||++||||++++|+++||||||++||+.+.+.+.+ .++.+. .++|+|++||+++.+..||+|++|++|++++.|+++
T Consensus 149 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~ 227 (269)
T PRK13648 149 QRVAIAGVLALNPSVIILDEATSMLDPDARQNLLD-LVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPT 227 (269)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999887654 566654 378999999999998889999999999999999999
Q ss_pred HHHh
Q 001091 805 DLIA 808 (1159)
Q Consensus 805 eL~~ 808 (1159)
++.+
T Consensus 228 ~~~~ 231 (269)
T PRK13648 228 EIFD 231 (269)
T ss_pred HHhc
Confidence 9876
No 162
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=2.9e-35 Score=327.79 Aligned_cols=200 Identities=26% Similarity=0.384 Sum_probs=167.0
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
+.++++|+++.|++ .+.++| ||++++||+++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 4 ~~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~ 74 (257)
T PRK10619 4 NKLNVIDLHKRYGE--------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSI-VVNGQTINLVRD 74 (257)
T ss_pred ccEEEeeeEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEEcccccc
Confidence 46999999999963 358999 99999999999999999999999999999999999998 7665
Q ss_pred ------------------EEEEEecCCCCCC-CcHHHHHhcCC----CCC----hHHHHHHHHHhccchHHHhccCCCCc
Q 001091 660 ------------------KKAYVPQSSWIQT-GTIRENILFGK----DMR----QSFYEEVLEGCALNQDIEMWADGDLS 712 (1159)
Q Consensus 660 ------------------~iayv~Q~pwi~~-gTIreNIlfG~----~~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T 712 (1159)
.++|++|++.++. .|++||+.++. ..+ +++..+.++..++.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------- 145 (257)
T PRK10619 75 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA--------- 145 (257)
T ss_pred cccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh---------
Confidence 3799999999986 59999998752 112 12333444444443221
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEE
Q 001091 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVL 790 (1159)
Q Consensus 713 ~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Ii 790 (1159)
......+||||||||++||||+.++|+++||||||++||+.+.+.+.+ .++.+. +|+|+|+|||+++.++. ||+|+
T Consensus 146 -~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivsH~~~~~~~~~d~i~ 223 (257)
T PRK10619 146 -QGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVI 223 (257)
T ss_pred -hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 135567999999999999999999999999999999999999887654 566654 48999999999999885 99999
Q ss_pred EEeCCeEEEecChHHHHh
Q 001091 791 VMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 791 vl~~G~I~e~Gt~~eL~~ 808 (1159)
+|++|++++.|+++++.+
T Consensus 224 ~l~~G~i~~~~~~~~~~~ 241 (257)
T PRK10619 224 FLHQGKIEEEGAPEQLFG 241 (257)
T ss_pred EEECCEEEEeCCHHHhhh
Confidence 999999999999999865
No 163
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-35 Score=332.11 Aligned_cols=204 Identities=24% Similarity=0.395 Sum_probs=168.4
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.|+++|+++.|++... ...++++| |+++++||+++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 2 ~i~~~~l~~~~~~~~~---~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 77 (287)
T PRK13641 2 SIKFENVDYIYSPGTP---MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTI-TIAGYHITPETGN 77 (287)
T ss_pred EEEEEEEEEEcCCCCC---ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEECcccccc
Confidence 3789999999974200 01468999 99999999999999999999999999999999999998 7766
Q ss_pred --------EEEEEecCC--CCCCCcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCC
Q 001091 660 --------KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1159)
Q Consensus 660 --------~iayv~Q~p--wi~~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LS 722 (1159)
.++|++|+| .+++.|++|||.|+.. .+ +++.+++++.++|..++ ......+||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LS 147 (287)
T PRK13641 78 KNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL----------ISKSPFELS 147 (287)
T ss_pred chHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH----------hhCCcccCC
Confidence 279999998 5778999999987642 22 22445556666664322 134467899
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeCCeEEEe
Q 001091 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQS 800 (1159)
Q Consensus 723 GGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~ 800 (1159)
||||||++||||+..+|+++||||||++||+...+.+ .+.++.+. +|+|+|++||+++.+. .||+|++|++|++++.
T Consensus 148 gGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l-~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~ 226 (287)
T PRK13641 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEM-MQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKH 226 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999997765 45666654 4899999999999875 5999999999999999
Q ss_pred cChHHHHh
Q 001091 801 GKYEDLIA 808 (1159)
Q Consensus 801 Gt~~eL~~ 808 (1159)
|+.+++.+
T Consensus 227 g~~~~~~~ 234 (287)
T PRK13641 227 ASPKEIFS 234 (287)
T ss_pred CCHHHHhc
Confidence 99998875
No 164
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=2.5e-35 Score=320.95 Aligned_cols=191 Identities=30% Similarity=0.389 Sum_probs=157.3
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++++|++.. ...+.+++ ||++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 2 l~~~~v~~~~~~~~----~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 76 (221)
T TIGR02211 2 LKCENLGKRYQEGK----LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEV-LFNGQSLSKLSSNE 76 (221)
T ss_pred EEEEeeeEEccCCC----cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEhhhcCHhH
Confidence 68899999996420 12468999 99999999999999999999999999999999999998 7764
Q ss_pred -------EEEEEecCCCCCC-CcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHH
Q 001091 660 -------KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1159)
Q Consensus 660 -------~iayv~Q~pwi~~-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGG 724 (1159)
.++|++|+|.++. .|++||+.++.. ++ +++..+.++.+++.+. ......+||||
T Consensus 77 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G 145 (221)
T TIGR02211 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHR-----------INHRPSELSGG 145 (221)
T ss_pred HHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHH
Confidence 3899999998885 699999987421 22 2234455555555432 23345689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccccCEEEEEeCCeEE
Q 001091 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798 (1159)
Q Consensus 725 QKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~ 798 (1159)
||||++||||++++|+++||||||++||+++.+.+. +.+..+. .++|+|++||+++.+..+|+|++|++|+++
T Consensus 146 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 146 ERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIF-DLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 999999999999999999999999999999987665 4566554 379999999999998889999999999986
No 165
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-35 Score=325.67 Aligned_cols=202 Identities=24% Similarity=0.347 Sum_probs=168.8
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC-----CCCcEEEECC----
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~-----~~G~i~~v~g---- 659 (1159)
.++++|+++.|+. .+.+++ |+++++||+++|+||+|||||||+++|.|..+| .+|+| .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v-~~~g~~~~ 73 (249)
T PRK14253 3 KFNIENLDLFYGE--------NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKL-TMDGEDIY 73 (249)
T ss_pred eEEEeccEEEECC--------eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE-EECCEEcc
Confidence 4789999999963 358999 999999999999999999999999999999986 58998 7765
Q ss_pred ----------EEEEEecCCCCCCCcHHHHHhcCCCC---C-h----HHHHHHHHHhccchHHHhccCCCCccccCCCCCC
Q 001091 660 ----------KKAYVPQSSWIQTGTIRENILFGKDM---R-Q----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1159)
Q Consensus 660 ----------~iayv~Q~pwi~~gTIreNIlfG~~~---d-~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~L 721 (1159)
.++|++|+|.++..|++|||.++... + + ++..++++..++.+++. +.......+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~L 146 (249)
T PRK14253 74 GNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGL 146 (249)
T ss_pred cccchHHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccC
Confidence 37999999999999999999986421 1 1 22334455555554442 2345667899
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeCCeEEEe
Q 001091 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1159)
Q Consensus 722 SGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~ 800 (1159)
|||||||++||||++.+|+++||||||++||+++.+.+. +.+..+.+++|+|++||+++.++. ||+|++|++|+|++.
T Consensus 147 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~ 225 (249)
T PRK14253 147 SGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIE-ELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEH 225 (249)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999977654 567777667999999999999775 999999999999999
Q ss_pred cChHHHHh
Q 001091 801 GKYEDLIA 808 (1159)
Q Consensus 801 Gt~~eL~~ 808 (1159)
|+.+++.+
T Consensus 226 g~~~~~~~ 233 (249)
T PRK14253 226 DDTQVIFS 233 (249)
T ss_pred CCHHHHHc
Confidence 99888764
No 166
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.2e-35 Score=324.65 Aligned_cols=197 Identities=22% Similarity=0.327 Sum_probs=166.3
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|+++.|++ .+.+++ ||++++||+++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 3 i~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~~ 73 (242)
T TIGR03411 3 LYLEGLSVSFDG--------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSV-LFGGTDLTGLPEHQ 73 (242)
T ss_pred EEEEeeEEEcCC--------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeE-EECCeecCCCCHHH
Confidence 789999999963 368999 99999999999999999999999999999999999998 7765
Q ss_pred ----EEEEEecCCCCCCC-cHHHHHhcCCCCC---------------hHHHHHHHHHhccchHHHhccCCCCccccCCCC
Q 001091 660 ----KKAYVPQSSWIQTG-TIRENILFGKDMR---------------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1159)
Q Consensus 660 ----~iayv~Q~pwi~~g-TIreNIlfG~~~d---------------~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~ 719 (1159)
.++|++|++.++.+ |++||+.++...+ +++.++.++..++ .........
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~ 142 (242)
T TIGR03411 74 IARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL-----------ADEADRLAG 142 (242)
T ss_pred HHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCC-----------chhhcCChh
Confidence 38999999999886 9999998864311 1223333333333 233445667
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeCCeEE
Q 001091 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1159)
Q Consensus 720 ~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~ 798 (1159)
+||||||||++||||++++|+++||||||++||+++.+.+. +.++.+.+++|+|++||+++.++. ||+|++|++|+++
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~ 221 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTA-ELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVL 221 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE
Confidence 89999999999999999999999999999999999987664 567666668999999999999865 9999999999999
Q ss_pred EecChHHHHh
Q 001091 799 QSGKYEDLIA 808 (1159)
Q Consensus 799 e~Gt~~eL~~ 808 (1159)
+.|+++++..
T Consensus 222 ~~~~~~~~~~ 231 (242)
T TIGR03411 222 AEGSLDQVQA 231 (242)
T ss_pred eeCCHHHHhc
Confidence 9999998865
No 167
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-35 Score=332.05 Aligned_cols=203 Identities=26% Similarity=0.405 Sum_probs=166.0
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++++|+... ....++++| |+++++|++++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 3 l~~~~l~~~~~~~~---~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~i~~~~~~~ 78 (280)
T PRK13649 3 INLQNVSYTYQAGT---PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSV-RVDDTLITSTSKNK 78 (280)
T ss_pred EEEEEEEEEcCCCC---ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEcccccccc
Confidence 78999999997430 001368999 99999999999999999999999999999999999998 7765
Q ss_pred -------EEEEEecCC--CCCCCcHHHHHhcCCC---CChH----HHHHHHHHhccchHHHhccCCCCccccCCCCCCCH
Q 001091 660 -------KKAYVPQSS--WIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1159)
Q Consensus 660 -------~iayv~Q~p--wi~~gTIreNIlfG~~---~d~~----~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSG 723 (1159)
.++|++|+| .+++.|++|||.|+.. .+.+ +.+++++..+|.++ ....+..+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSg 148 (280)
T PRK13649 79 DIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSG 148 (280)
T ss_pred CHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCH
Confidence 279999998 6888999999987632 2222 22344444444321 12345678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeCCeEEEec
Q 001091 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 724 GQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~G 801 (1159)
|||||++||||++++|+++||||||++||+++.+.+.+ .++.+. +++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 227 (280)
T PRK13649 149 GQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMT-LFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSG 227 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999776654 565554 4799999999999885 59999999999999999
Q ss_pred ChHHHHh
Q 001091 802 KYEDLIA 808 (1159)
Q Consensus 802 t~~eL~~ 808 (1159)
+.+++.+
T Consensus 228 ~~~~~~~ 234 (280)
T PRK13649 228 KPKDIFQ 234 (280)
T ss_pred CHHHHhc
Confidence 9998865
No 168
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=2e-35 Score=320.09 Aligned_cols=187 Identities=28% Similarity=0.392 Sum_probs=156.0
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|+++.|+.. .++++| |+++++|++++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~i~~~~~~~ 72 (214)
T cd03292 1 IEFINVTKTYPNG-------TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI-RVNGQDVSDLRGRA 72 (214)
T ss_pred CEEEEEEEEeCCC-------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEcccCCHHH
Confidence 4689999999642 468999 99999999999999999999999999999999999998 7765
Q ss_pred ------EEEEEecCCCCCC-CcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHH
Q 001091 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1159)
Q Consensus 660 ------~iayv~Q~pwi~~-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQ 725 (1159)
.++|++|+|.++. .|++||+.++.. .+ +++.++.++.+++++.++. ...+|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~ 141 (214)
T cd03292 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRA-----------LPAELSGGE 141 (214)
T ss_pred HHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHH
Confidence 3899999998887 599999987632 11 2344566666666543332 335899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeE
Q 001091 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1159)
Q Consensus 726 KQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I 797 (1159)
|||++||||+.++|+++||||||++||+++.+.+. +.++.+. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 142 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 142 QQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIM-NLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999977665 4565553 58999999999999875 999999999974
No 169
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-35 Score=327.71 Aligned_cols=203 Identities=24% Similarity=0.363 Sum_probs=172.4
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC-----CCCcEEEECC---
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~-----~~G~i~~v~g--- 659 (1159)
..|+++|++++|++ .++++| |+++++||+++|+|++|||||||+++|.|+.+| .+|+| .++|
T Consensus 15 ~~l~~~~l~~~~~~--------~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i-~~~g~~~ 85 (265)
T PRK14252 15 QKSEVNKLNFYYGG--------YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEI-ILHPDNV 85 (265)
T ss_pred ceEEEEEEEEEECC--------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEE-EEcCccc
Confidence 46999999999963 368999 999999999999999999999999999999875 68988 6643
Q ss_pred --------------EEEEEecCCCCCCCcHHHHHhcCCCC--------ChHHHHHHHHHhccchHHHhccCCCCccccCC
Q 001091 660 --------------KKAYVPQSSWIQTGTIRENILFGKDM--------RQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1159)
Q Consensus 660 --------------~iayv~Q~pwi~~gTIreNIlfG~~~--------d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~ 717 (1159)
.++|++|+|.++.+|++|||.++... .+++..++++.+++.+++. +..+..
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~ 158 (265)
T PRK14252 86 NILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDL 158 (265)
T ss_pred cccccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCC
Confidence 38999999999999999999876321 1345566677776654443 334567
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEeCCe
Q 001091 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGK 796 (1159)
Q Consensus 718 G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~ 796 (1159)
..+||||||||++||||++++|+++||||||++||+.+.+.+. +.+..+.+++|+|+|||+++.+. .||+|++|++|+
T Consensus 159 ~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~-~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~ 237 (265)
T PRK14252 159 AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIE-ELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGE 237 (265)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 7899999999999999999999999999999999999977665 45666656789999999999985 599999999999
Q ss_pred EEEecChHHHHh
Q 001091 797 IEQSGKYEDLIA 808 (1159)
Q Consensus 797 I~e~Gt~~eL~~ 808 (1159)
+++.|+.+++..
T Consensus 238 i~~~g~~~~~~~ 249 (265)
T PRK14252 238 LIEFGATDTIFI 249 (265)
T ss_pred EEEeCCHHHHHh
Confidence 999999999865
No 170
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-35 Score=332.91 Aligned_cols=205 Identities=24% Similarity=0.347 Sum_probs=165.2
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
+.|+++|++++|+.... ...++++| |+++++||.++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 5 ~~l~i~nl~~~~~~~~~---~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~ 80 (289)
T PRK13645 5 KDIILDNVSYTYAKKTP---FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQT-IVGDYAIPANLK 80 (289)
T ss_pred ceEEEEEEEEEeCCCCc---cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEEcccccc
Confidence 45899999999974300 01358999 99999999999999999999999999999999999998 6654
Q ss_pred ----------EEEEEecCCC--CCCCcHHHHHhcCCCC---ChH----HHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 ----------KKAYVPQSSW--IQTGTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 ----------~iayv~Q~pw--i~~gTIreNIlfG~~~---d~~----~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.++|++|+|. +++.|++|||.|+... +.+ +.++.++..+|. .+ .......+
T Consensus 81 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~-------~~---~~~~~~~~ 150 (289)
T PRK13645 81 KIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLP-------ED---YVKRSPFE 150 (289)
T ss_pred ccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCC-------hh---HhcCChhh
Confidence 3799999984 6788999999986431 211 122333333332 11 12356678
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEeCCeE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I 797 (1159)
||||||||++||||++++|+++||||||++||+++.+.+. +.++.+. .++|+|++||+++.+. .||+|++|++|++
T Consensus 151 LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i 229 (289)
T PRK13645 151 LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFI-NLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKV 229 (289)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999977664 4566554 3799999999999875 5999999999999
Q ss_pred EEecChHHHHh
Q 001091 798 EQSGKYEDLIA 808 (1159)
Q Consensus 798 ~e~Gt~~eL~~ 808 (1159)
++.|+.+++.+
T Consensus 230 ~~~g~~~~~~~ 240 (289)
T PRK13645 230 ISIGSPFEIFS 240 (289)
T ss_pred EEeCCHHHHhc
Confidence 99999998865
No 171
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3e-35 Score=305.70 Aligned_cols=160 Identities=28% Similarity=0.453 Sum_probs=145.2
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--EEEEEecC
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQS 667 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--~iayv~Q~ 667 (1159)
|+++|++++|+.. .+.+++ |+++++||+++|+||+|||||||+++|+|+.+|.+|+| .++| .++|++|+
T Consensus 1 i~~~~~~~~~~~~-------~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~~~~~i~~~~q~ 72 (166)
T cd03223 1 IELENLSLATPDG-------RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI-GMPEGEDLLFLPQR 72 (166)
T ss_pred CEEEEEEEEcCCC-------CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCCceEEEECCC
Confidence 4689999999642 468999 99999999999999999999999999999999999999 8877 79999999
Q ss_pred CCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q 001091 668 SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1159)
Q Consensus 668 pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp 747 (1159)
+.++++|++|||.++ +...||||||||++||||++++|+++|||||
T Consensus 73 ~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEP 118 (166)
T cd03223 73 PYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEA 118 (166)
T ss_pred CccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 999999999999874 3478999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCC
Q 001091 748 FSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDG 795 (1159)
Q Consensus 748 ~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G 795 (1159)
|++||+++.+.+.+ .+..+ ++|+|++||+.+....||+|++|++|
T Consensus 119 t~~LD~~~~~~l~~-~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 119 TSALDEESEDRLYQ-LLKEL--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred ccccCHHHHHHHHH-HHHHh--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 99999999887754 55554 69999999999988889999999875
No 172
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-35 Score=326.03 Aligned_cols=202 Identities=29% Similarity=0.410 Sum_probs=168.2
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC-----CCCcEEEECC----
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~-----~~G~i~~v~g---- 659 (1159)
.|+++|+++.|++ .+.+++ ||++++||+++|+|++|||||||+++|.|.++| .+|+| .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i-~i~g~~~~ 73 (250)
T PRK14262 3 IIEIENFSAYYGE--------KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKI-YFKGQDIY 73 (250)
T ss_pred eEEEEeeEEEeCC--------ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE-EECCEEcc
Confidence 4889999999963 368999 999999999999999999999999999999874 89998 7654
Q ss_pred -----------EEEEEecCCCCCCCcHHHHHhcCCCC----ChH----HHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 -----------~iayv~Q~pwi~~gTIreNIlfG~~~----d~~----~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.++|++|+|.++..|++||+.++... .++ +.++.++..++.++++ +..+.+..+
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 146 (250)
T PRK14262 74 DPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTR 146 (250)
T ss_pred cchhhHHHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhh
Confidence 38999999999999999999876321 111 2333444445544332 234567889
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEeCCeEEE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e 799 (1159)
||||||||++||||++++|+++||||||++||+.+.+.+ .+.++.+.+++|+|++||+++.+. .||+|++|++|++++
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRI-EKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIE 225 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHH-HHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999997765 556766666899999999999764 599999999999999
Q ss_pred ecChHHHHh
Q 001091 800 SGKYEDLIA 808 (1159)
Q Consensus 800 ~Gt~~eL~~ 808 (1159)
.|+.+++.+
T Consensus 226 ~g~~~~~~~ 234 (250)
T PRK14262 226 YGPTREIVE 234 (250)
T ss_pred ecCHHHHHh
Confidence 999999875
No 173
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=4.4e-35 Score=328.39 Aligned_cols=199 Identities=25% Similarity=0.326 Sum_probs=165.6
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
..|+++|+++.|++ .++++| ||++++|++++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 6 ~~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~ 76 (269)
T PRK11831 6 NLVDMRGVSFTRGN--------RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI-LFDGENIPAMSR 76 (269)
T ss_pred ceEEEeCeEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEccccCh
Confidence 35899999999963 468999 99999999999999999999999999999999999998 7765
Q ss_pred --------EEEEEecCCCCCCC-cHHHHHhcCC----CCCh----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCC
Q 001091 660 --------KKAYVPQSSWIQTG-TIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1159)
Q Consensus 660 --------~iayv~Q~pwi~~g-TIreNIlfG~----~~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LS 722 (1159)
.++|++|++.++.+ |++|||.++. ..++ ++..+.++..++.+.. ..+..+||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS 145 (269)
T PRK11831 77 SRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAA-----------KLMPSELS 145 (269)
T ss_pred hhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCC
Confidence 38999999999875 9999998752 1222 2333445555543222 23446899
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccc-cCEEEEEeCCeEEE
Q 001091 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1159)
Q Consensus 723 GGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e 799 (1159)
||||||++||||+.++|+++||||||++||+.+.+.+. +.++.+. +|+|+|++||+++.+.. ||+|++|++|++++
T Consensus 146 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~ 224 (269)
T PRK11831 146 GGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLV-KLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVA 224 (269)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEE
Confidence 99999999999999999999999999999999977664 4566554 27999999999998765 99999999999999
Q ss_pred ecChHHHHh
Q 001091 800 SGKYEDLIA 808 (1159)
Q Consensus 800 ~Gt~~eL~~ 808 (1159)
.|+++++.+
T Consensus 225 ~g~~~~~~~ 233 (269)
T PRK11831 225 HGSAQALQA 233 (269)
T ss_pred eCCHHHHhc
Confidence 999999876
No 174
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-35 Score=323.22 Aligned_cols=197 Identities=26% Similarity=0.355 Sum_probs=163.2
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|+++.|++ .++++| |+++++||.++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 3 l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 73 (242)
T PRK11124 3 IQLNGINCFYGA--------HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL-NIAGNHFDFSKTPS 73 (242)
T ss_pred EEEEeeEEEECC--------eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEecccccccc
Confidence 789999999963 368999 99999999999999999999999999999999999998 7754
Q ss_pred ---------EEEEEecCCCCCC-CcHHHHHhcCC-C---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCC
Q 001091 660 ---------KKAYVPQSSWIQT-GTIRENILFGK-D---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1159)
Q Consensus 660 ---------~iayv~Q~pwi~~-gTIreNIlfG~-~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~L 721 (1159)
.++|++|+|-++. .|++|||.++. + .. +++..+.++..++.+ .......+|
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~L 142 (242)
T PRK11124 74 DKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKP-----------YADRFPLHL 142 (242)
T ss_pred hhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhC
Confidence 3799999998886 59999997431 1 11 122334444444433 333445699
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeEEE
Q 001091 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1159)
Q Consensus 722 SGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e 799 (1159)
|||||||++||||++++|+++||||||++||+.+.+.+.+ .++.+. +++|+|++||+++.+.. ||+|++|++|++++
T Consensus 143 S~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~ 221 (242)
T PRK11124 143 SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS-IIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE 221 (242)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999877654 566654 48999999999999865 99999999999999
Q ss_pred ecChHHHHh
Q 001091 800 SGKYEDLIA 808 (1159)
Q Consensus 800 ~Gt~~eL~~ 808 (1159)
.|+++++.+
T Consensus 222 ~~~~~~~~~ 230 (242)
T PRK11124 222 QGDASCFTQ 230 (242)
T ss_pred eCCHHHhcC
Confidence 999988754
No 175
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-35 Score=329.46 Aligned_cols=204 Identities=25% Similarity=0.385 Sum_probs=172.6
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
-++++|++++|+.... ....+++++ |++|++||.++|+|++|||||||+++|.|.++|.+|+| .++|
T Consensus 4 ~l~~~~l~~~~~~~~~--~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~i~g~~i~~~~~~ 80 (280)
T PRK13633 4 MIKCKNVSYKYESNEE--STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKV-YVDGLDTSDEENL 80 (280)
T ss_pred eEEEeeeEEEcCCCCC--CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEeccccccH
Confidence 4899999999974300 012469999 99999999999999999999999999999999999998 7765
Q ss_pred -----EEEEEecCCC--CCCCcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHH
Q 001091 660 -----KKAYVPQSSW--IQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1159)
Q Consensus 660 -----~iayv~Q~pw--i~~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQ 725 (1159)
.++|++|+|. ++..|++||+.|+.. .+ +++.+++++.++|.+..... ..+|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~ 149 (280)
T PRK13633 81 WDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHA-----------PHLLSGGQ 149 (280)
T ss_pred HHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHH
Confidence 3799999984 677799999998742 12 24566777777876555443 36899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccccCEEEEEeCCeEEEecCh
Q 001091 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1159)
Q Consensus 726 KQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~ 803 (1159)
|||++||||+.++|+++||||||++||+.+.+.+. +.+..+. .|+|+|++||+++.+..||++++|++|+|++.|++
T Consensus 150 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (280)
T PRK13633 150 KQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVV-NTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTP 228 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999988765 5666654 38999999999999888999999999999999999
Q ss_pred HHHHh
Q 001091 804 EDLIA 808 (1159)
Q Consensus 804 ~eL~~ 808 (1159)
+++..
T Consensus 229 ~~~~~ 233 (280)
T PRK13633 229 KEIFK 233 (280)
T ss_pred HHHhc
Confidence 99876
No 176
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-35 Score=343.12 Aligned_cols=206 Identities=26% Similarity=0.395 Sum_probs=169.2
Q ss_pred cEEEeeeEEEeCCcccc----------------cCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCC
Q 001091 590 AIDIEAGEYAWDAREEN----------------FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~----------------~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G 652 (1159)
.|+++|++..|.+.... .....+.++| ||++++||+++|+||+|||||||+++|.|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 47888888777654210 0012347999 999999999999999999999999999999999999
Q ss_pred cEEEECC-----------------EEEEEecCCCCCC-CcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhcc
Q 001091 653 AAIKVHG-----------------KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWA 707 (1159)
Q Consensus 653 ~i~~v~g-----------------~iayv~Q~pwi~~-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp 707 (1159)
+| .++| +++||+|++.++. .|++|||.|+.. ++ +++..++++.++|.+.....|
T Consensus 84 ~I-~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~ 162 (400)
T PRK10070 84 QV-LIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP 162 (400)
T ss_pred EE-EECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc
Confidence 99 7765 4899999999885 699999998643 22 234556677777765444433
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-
Q 001091 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD- 784 (1159)
Q Consensus 708 ~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~- 784 (1159)
.+||||||||++||||+..+|+++|||||||+||+.+.+.+.+ .+..+. .++|+|+|||+++.+.
T Consensus 163 -----------~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~-~L~~l~~~~g~TIIivTHd~~~~~~ 230 (400)
T PRK10070 163 -----------DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQD-ELVKLQAKHQRTIVFISHDLDEAMR 230 (400)
T ss_pred -----------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHH-HHHHHHHHCCCeEEEEECCHHHHHH
Confidence 5899999999999999999999999999999999999877654 555553 4899999999999875
Q ss_pred ccCEEEEEeCCeEEEecChHHHHh
Q 001091 785 AADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 785 ~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
.||+|++|++|+|++.|+++++.+
T Consensus 231 ~~Dri~vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 231 IGDRIAIMQNGEVVQVGTPDEILN 254 (400)
T ss_pred hCCEEEEEECCEEEecCCHHHHHh
Confidence 599999999999999999999986
No 177
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-35 Score=317.85 Aligned_cols=190 Identities=26% Similarity=0.445 Sum_probs=157.9
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------E
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------K 660 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------~ 660 (1159)
++++|+++.|++ .+++++ |+++++|+.++|+||+|||||||+++|.|.++|.+|+| .++| .
T Consensus 1 l~~~~l~~~~~~--------~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (210)
T cd03269 1 LEVENVTKRFGR--------VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV-LFDGKPLDIAARNR 71 (210)
T ss_pred CEEEEEEEEECC--------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCCchhHHHHcc
Confidence 468999999963 368999 99999999999999999999999999999999999999 8876 4
Q ss_pred EEEEecCCCCCC-CcHHHHHhcCCCC---C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHH
Q 001091 661 KAYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1159)
Q Consensus 661 iayv~Q~pwi~~-gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLA 732 (1159)
++|++|++-++. .|++||+.++..+ + +++.++.++..++... ......+||||||||++||
T Consensus 72 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la 140 (210)
T cd03269 72 IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEY-----------ANKRVEELSKGNQQKVQFI 140 (210)
T ss_pred EEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHH-----------HhCcHhhCCHHHHHHHHHH
Confidence 899999998876 5999999875321 1 2233444555544332 3345678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeEEEec
Q 001091 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 733 RAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~G 801 (1159)
||++++|+++||||||++||+.+.+.+.+ .++.+. +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 141 ~al~~~p~~lllDEP~~~LD~~~~~~~~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 141 AAVIHDPELLILDEPFSGLDPVNVELLKD-VIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999877655 455543 47899999999998754 9999999999998764
No 178
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-35 Score=329.22 Aligned_cols=204 Identities=25% Similarity=0.371 Sum_probs=170.1
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc-----CCCCcEEEECC--
Q 001091 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG-- 659 (1159)
Q Consensus 588 ~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~-----~~~G~i~~v~g-- 659 (1159)
+..|+++|+++.|+. .+++++ ||+|++||+++|+||+|||||||+++|.|.++ |.+|+| .++|
T Consensus 37 ~~~l~i~~l~~~~~~--------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I-~i~G~~ 107 (285)
T PRK14254 37 ETVIEARDLNVFYGD--------EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGEL-TFRGKN 107 (285)
T ss_pred CceEEEEEEEEEECC--------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE-EECCEE
Confidence 346999999999963 368999 99999999999999999999999999999987 689998 7654
Q ss_pred -------------EEEEEecCCCCCCCcHHHHHhcCCC---C---ChHHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 -------------KKAYVPQSSWIQTGTIRENILFGKD---M---RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 -------------~iayv~Q~pwi~~gTIreNIlfG~~---~---d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.++|++|++.++..|++|||.++.. . .+++.+++++..+|.++++. ...++..+
T Consensus 108 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~ 180 (285)
T PRK14254 108 VYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLD 180 (285)
T ss_pred ccccccchHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCccc
Confidence 3799999999999999999987532 1 13345566666666443321 23566789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEE-EEeCCeEE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVL-VMKDGKIE 798 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Ii-vl~~G~I~ 798 (1159)
||||||||++||||++++|+++||||||++||+.+.+.+. +.++.+.+++|+|++||+++.+.. ||+++ +|++|+|+
T Consensus 181 LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~-~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~ 259 (285)
T PRK14254 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIE-DLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELV 259 (285)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEE
Confidence 9999999999999999999999999999999999987664 467666667899999999999765 99975 57999999
Q ss_pred EecChHHHHh
Q 001091 799 QSGKYEDLIA 808 (1159)
Q Consensus 799 e~Gt~~eL~~ 808 (1159)
+.|+.+++.+
T Consensus 260 ~~g~~~~~~~ 269 (285)
T PRK14254 260 EFDDTDKIFE 269 (285)
T ss_pred EeCCHHHHHh
Confidence 9999988865
No 179
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-35 Score=325.22 Aligned_cols=202 Identities=25% Similarity=0.372 Sum_probs=171.1
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc-----CCCCcEEEECC----
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG---- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~-----~~~G~i~~v~g---- 659 (1159)
.++++|+++.|++ .+.++| |+++++||.++|+|++|||||||+++|.|..+ |++|+| .++|
T Consensus 3 ~l~~~~v~~~~~~--------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v-~~~g~~i~ 73 (250)
T PRK14266 3 RIEVENLNTYFDD--------AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHI-YLDGVDIY 73 (250)
T ss_pred EEEEEeEEEEeCC--------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEE-EECCEEcc
Confidence 4789999999963 368999 99999999999999999999999999999864 388998 6655
Q ss_pred -----------EEEEEecCCCCCCCcHHHHHhcCCC----CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 -----------KKAYVPQSSWIQTGTIRENILFGKD----MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 -----------~iayv~Q~pwi~~gTIreNIlfG~~----~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.++|+||+|++|+.|++|||.++.. .+ ++++.+.++.++|.++++.+ .++.+.+
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~ 146 (250)
T PRK14266 74 DPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALG 146 (250)
T ss_pred cccccHHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCccc
Confidence 3899999999999999999987531 12 23456677777776665432 3466789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeCCeEEE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e 799 (1159)
||||||||++||||++++|+++||||||++||+.+.+.+ .+.+..+.+++|+|++||+++.+.. +|+|++|++|++++
T Consensus 147 LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l-~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~ 225 (250)
T PRK14266 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKI-EDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIE 225 (250)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHH-HHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEE
Confidence 999999999999999999999999999999999997766 4567666668999999999998765 89999999999999
Q ss_pred ecChHHHHh
Q 001091 800 SGKYEDLIA 808 (1159)
Q Consensus 800 ~Gt~~eL~~ 808 (1159)
.|+++++..
T Consensus 226 ~g~~~~~~~ 234 (250)
T PRK14266 226 SGLTDQIFI 234 (250)
T ss_pred eCCHHHHHh
Confidence 999999865
No 180
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.3e-35 Score=323.22 Aligned_cols=198 Identities=27% Similarity=0.445 Sum_probs=163.9
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|+++.|++ .+.++| ||++++||.++|+|++|||||||+++|.|.++|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (230)
T TIGR03410 1 LEVSNLNVYYGQ--------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSI-RLDGEDITKLPPHE 71 (230)
T ss_pred CEEEeEEEEeCC--------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-EECCEECCCCCHHH
Confidence 468999999963 368999 99999999999999999999999999999999999998 7765
Q ss_pred ----EEEEEecCCCCCCC-cHHHHHhcCCCC-C---hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHH
Q 001091 660 ----KKAYVPQSSWIQTG-TIRENILFGKDM-R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1159)
Q Consensus 660 ----~iayv~Q~pwi~~g-TIreNIlfG~~~-d---~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIa 730 (1159)
.++|++|++.++.. |++||+.++... . ++.++++++..+ +..........+||||||||++
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~ 141 (230)
T TIGR03410 72 RARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLA 141 (230)
T ss_pred HHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHH
Confidence 38999999998876 999999876432 1 122333333332 1112234566789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHHHH
Q 001091 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807 (1159)
Q Consensus 731 LARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~ 807 (1159)
||||++++|+++||||||++||+.+.+.+. +.+..+.+ ++|+|++||+++.++. ||+|+++++|++++.|+.+++.
T Consensus 142 la~al~~~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 142 IARALVTRPKLLLLDEPTEGIQPSIIKDIG-RVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHH-HHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 999999999999999999999999977665 55655543 7999999999999875 9999999999999999999874
Q ss_pred h
Q 001091 808 A 808 (1159)
Q Consensus 808 ~ 808 (1159)
.
T Consensus 221 ~ 221 (230)
T TIGR03410 221 E 221 (230)
T ss_pred h
Confidence 3
No 181
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-35 Score=333.21 Aligned_cols=203 Identities=25% Similarity=0.398 Sum_probs=170.8
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc-----CCCCcEEEECC---
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~-----~~~G~i~~v~g--- 659 (1159)
..|+++|+++.|++ .++|++ ||+|++||+++|+|++|||||||+++|.|.++ |.+|+| .++|
T Consensus 44 ~~l~i~nl~~~~~~--------~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I-~i~g~~i 114 (305)
T PRK14264 44 AKLSVEDLDVYYGD--------DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSV-ELDGQDI 114 (305)
T ss_pred ceEEEEEEEEEeCC--------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-EECCEEc
Confidence 45899999999963 368999 99999999999999999999999999999986 689998 7764
Q ss_pred ------------EEEEEecCCCCCCCcHHHHHhcCCCC--------------------ChHHHHHHHHHhccchHHHhcc
Q 001091 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM--------------------RQSFYEEVLEGCALNQDIEMWA 707 (1159)
Q Consensus 660 ------------~iayv~Q~pwi~~gTIreNIlfG~~~--------------------d~~~y~~vl~ac~L~~dl~~lp 707 (1159)
.++|++|++.++++|++|||.++... .+++.+++++.+++.+++
T Consensus 115 ~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---- 190 (305)
T PRK14264 115 YQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV---- 190 (305)
T ss_pred ccccccHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh----
Confidence 48999999999999999999986321 123345556666554433
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-c
Q 001091 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-A 786 (1159)
Q Consensus 708 ~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-a 786 (1159)
++..+.+..+||||||||++||||+.++|+|+||||||++||+.+.+.+ .+.++.+.+++|+|++||+++.+.. |
T Consensus 191 ---~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l-~~~L~~~~~~~tiiivtH~~~~i~~~~ 266 (305)
T PRK14264 191 ---NDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKI-EDLIEELAEEYTVVVVTHNMQQAARIS 266 (305)
T ss_pred ---hHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHhcCCEEEEEEcCHHHHHHhc
Confidence 3445677889999999999999999999999999999999999997766 4567776667999999999999765 9
Q ss_pred CEE-EEEeCCeEEEecChHHHHh
Q 001091 787 DLV-LVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 787 D~I-ivl~~G~I~e~Gt~~eL~~ 808 (1159)
|+| ++|++|++++.|+++++.+
T Consensus 267 d~i~~~l~~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 267 DQTAVFLTGGELVEYDDTDKIFE 289 (305)
T ss_pred CEEEEEecCCEEEEeCCHHHHHh
Confidence 997 5679999999999998875
No 182
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-35 Score=328.06 Aligned_cols=199 Identities=27% Similarity=0.416 Sum_probs=168.9
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|++++|+.. .++++| ||++++||.++|+|++|||||||+++|.|+++|++|+| .++|
T Consensus 3 ~l~~~~l~~~~~~~-------~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 74 (277)
T PRK13652 3 LIETRDLCYSYSGS-------KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV-LIRGEPITKENIR 74 (277)
T ss_pred eEEEEEEEEEeCCC-------CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEECCcCCHH
Confidence 37899999999643 358999 99999999999999999999999999999999999999 8766
Q ss_pred ----EEEEEecCC--CCCCCcHHHHHhcCCC---CCh----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHH
Q 001091 660 ----KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1159)
Q Consensus 660 ----~iayv~Q~p--wi~~gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQK 726 (1159)
.++||+|+| .+++.|++|||.++.. +++ ++.++.++.++|.+.+.. ....||||||
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~ 143 (277)
T PRK13652 75 EVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDR-----------VPHHLSGGEK 143 (277)
T ss_pred HHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcC-----------CcccCCHHHH
Confidence 389999997 3778999999987642 333 245666777777554433 3458999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCccccc-ccCEEEEEeCCeEEEecCh
Q 001091 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803 (1159)
Q Consensus 727 QRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~ 803 (1159)
||++||||++.+|+++||||||++||+.+.+.+. +.++.+.+ ++|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 144 qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~ 222 (277)
T PRK13652 144 KRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELI-DFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTV 222 (277)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCH
Confidence 9999999999999999999999999999977664 45655543 799999999999984 6999999999999999999
Q ss_pred HHHHh
Q 001091 804 EDLIA 808 (1159)
Q Consensus 804 ~eL~~ 808 (1159)
+++.+
T Consensus 223 ~~~~~ 227 (277)
T PRK13652 223 EEIFL 227 (277)
T ss_pred HHHhc
Confidence 99976
No 183
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=5.4e-35 Score=324.43 Aligned_cols=198 Identities=28% Similarity=0.395 Sum_probs=164.6
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|++++|++ .++++| |+++++|++++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 73 (250)
T PRK11264 3 AIEVKNLVKKFHG--------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTI-RVGDITIDTARSL 73 (250)
T ss_pred cEEEeceEEEECC--------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEccccccc
Confidence 3789999999963 358999 99999999999999999999999999999999999998 6643
Q ss_pred ------------EEEEEecCCCCCC-CcHHHHHhcCC----CCCh----HHHHHHHHHhccchHHHhccCCCCccccCCC
Q 001091 660 ------------KKAYVPQSSWIQT-GTIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1159)
Q Consensus 660 ------------~iayv~Q~pwi~~-gTIreNIlfG~----~~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G 718 (1159)
.++|++|+|.++. .|++||+.++. ..+. ++.++.++..+|.. ......
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~ 142 (250)
T PRK11264 74 SQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAG-----------KETSYP 142 (250)
T ss_pred cchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc-----------hhhCCh
Confidence 4899999998885 79999998752 1121 22334444444432 234567
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCe
Q 001091 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1159)
Q Consensus 719 ~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~ 796 (1159)
.+||||||||++||||+..+|+++||||||++||+.+.+.+.+ .+..+. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 143 ~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~ 221 (250)
T PRK11264 143 RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLN-TIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGR 221 (250)
T ss_pred hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 8999999999999999999999999999999999999776654 565554 48999999999999865 99999999999
Q ss_pred EEEecChHHHHh
Q 001091 797 IEQSGKYEDLIA 808 (1159)
Q Consensus 797 I~e~Gt~~eL~~ 808 (1159)
+++.|+.+++.+
T Consensus 222 i~~~~~~~~~~~ 233 (250)
T PRK11264 222 IVEQGPAKALFA 233 (250)
T ss_pred EEEeCCHHHHhc
Confidence 999999999865
No 184
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=6e-35 Score=319.51 Aligned_cols=194 Identities=26% Similarity=0.364 Sum_probs=161.8
Q ss_pred ccEEEeeeEEEeCCcccccCCC-cccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-------
Q 001091 589 VAIDIEAGEYAWDAREENFKKP-TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~-~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g------- 659 (1159)
..++++|++++|++. .. .+++++ ||++++||.++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 5 ~~l~~~~l~~~~~~~-----~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~~~~~~ 78 (228)
T PRK10584 5 NIVEVHHLKKSVGQG-----EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEV-SLVGQPLHQMD 78 (228)
T ss_pred ceEEEeeeEEEccCC-----CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeE-EECCEEcccCC
Confidence 358999999999753 11 358999 99999999999999999999999999999999999998 7654
Q ss_pred ----------EEEEEecCCCCCC-CcHHHHHhcCCC---C----ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCC
Q 001091 660 ----------KKAYVPQSSWIQT-GTIRENILFGKD---M----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1159)
Q Consensus 660 ----------~iayv~Q~pwi~~-gTIreNIlfG~~---~----d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~L 721 (1159)
.++|++|+|.++. .|++|||.++.. . ++++.++.++.+++.+.++.. ..+|
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~L 147 (228)
T PRK10584 79 EEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHL-----------PAQL 147 (228)
T ss_pred HHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhC
Confidence 4899999998877 599999987421 1 134556677777776544433 3589
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccccCEEEEEeCCeEEE
Q 001091 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1159)
Q Consensus 722 SGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e 799 (1159)
|||||||++||||+.++|+++||||||++||+.+.+.+. +.++.+. .++|+|++||+++.+..||+|++|++|++++
T Consensus 148 S~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 148 SGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIA-DLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQE 226 (228)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999977665 4565553 3789999999999988899999999999986
Q ss_pred e
Q 001091 800 S 800 (1159)
Q Consensus 800 ~ 800 (1159)
.
T Consensus 227 ~ 227 (228)
T PRK10584 227 E 227 (228)
T ss_pred c
Confidence 4
No 185
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-35 Score=327.17 Aligned_cols=199 Identities=23% Similarity=0.318 Sum_probs=167.4
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
..++++|++++|++ .+++++ ||++++||+++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 10 ~~l~i~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~ 80 (265)
T PRK10575 10 TTFALRNVSFRVPG--------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI-LLDAQPLESWSS 80 (265)
T ss_pred ceEEEeeEEEEECC--------EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE-EECCEehhhCCH
Confidence 46999999999963 368999 99999999999999999999999999999999999999 8876
Q ss_pred -----EEEEEecCCCCC-CCcHHHHHhcCCC--------C---ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCC
Q 001091 660 -----KKAYVPQSSWIQ-TGTIRENILFGKD--------M---RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1159)
Q Consensus 660 -----~iayv~Q~pwi~-~gTIreNIlfG~~--------~---d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LS 722 (1159)
.++|++|++-++ ..|++||+.++.. . ++++.+++++.+++.+.++.. ..+||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS 149 (265)
T PRK10575 81 KAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----------VDSLS 149 (265)
T ss_pred HHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----------cccCC
Confidence 389999997654 4599999997631 1 123456677777765443333 34799
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEeCCeEEE
Q 001091 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1159)
Q Consensus 723 GGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e 799 (1159)
||||||++||||+..+|+++||||||++||+.+.+.+. +.+..+. .++|+|++||+++.+. .||+|++|++|+|++
T Consensus 150 gG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~-~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~ 228 (265)
T PRK10575 150 GGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVL-ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIA 228 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 99999999999999999999999999999999977654 4566654 3799999999999985 599999999999999
Q ss_pred ecChHHHHh
Q 001091 800 SGKYEDLIA 808 (1159)
Q Consensus 800 ~Gt~~eL~~ 808 (1159)
.|+.+++.+
T Consensus 229 ~~~~~~~~~ 237 (265)
T PRK10575 229 QGTPAELMR 237 (265)
T ss_pred ecCHHHhcC
Confidence 999988865
No 186
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-35 Score=318.96 Aligned_cols=195 Identities=26% Similarity=0.422 Sum_probs=165.4
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++++|+.. + .+ |+++++||.++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 2 l~~~~l~~~~~~~--------~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 70 (232)
T PRK10771 2 LKLTDITWLYHHL--------P--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSL-TLNGQDHTTTPPSR 70 (232)
T ss_pred eEEEEEEEEECCc--------c--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCeecCcCChhh
Confidence 6899999999632 1 27 99999999999999999999999999999999999999 7776
Q ss_pred -EEEEEecCCCCCCC-cHHHHHhcCCC-------CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHH
Q 001091 660 -KKAYVPQSSWIQTG-TIRENILFGKD-------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1159)
Q Consensus 660 -~iayv~Q~pwi~~g-TIreNIlfG~~-------~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIa 730 (1159)
.++|++|++-++.+ |++|||.++.. .++++.+++++..+|.+.+...| ..||||||||++
T Consensus 71 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ 139 (232)
T PRK10771 71 RPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVA 139 (232)
T ss_pred ccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHH
Confidence 38999999988875 99999987531 11334566677777765555444 479999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHHHH
Q 001091 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807 (1159)
Q Consensus 731 LARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~ 807 (1159)
||||+.++|+++||||||++||+.+.+.+.+ .+..+.+ ++|+|++||+++.++. ||+|++|++|++++.|+++++.
T Consensus 140 laral~~~p~lllLDEP~~gLD~~~~~~~~~-~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 140 LARCLVREQPILLLDEPFSALDPALRQEMLT-LVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999876654 5655543 7899999999999865 9999999999999999999987
Q ss_pred h
Q 001091 808 A 808 (1159)
Q Consensus 808 ~ 808 (1159)
+
T Consensus 219 ~ 219 (232)
T PRK10771 219 S 219 (232)
T ss_pred h
Confidence 6
No 187
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=5.1e-35 Score=332.93 Aligned_cols=199 Identities=29% Similarity=0.447 Sum_probs=166.9
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
..|+++|+++.|++ ...++| ||+|++||+++++||+|||||||+++|+|+++|++|+| .++|
T Consensus 6 ~~i~i~~l~k~~~~--------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v-~i~G~~~~~~~~ 76 (306)
T PRK13537 6 APIDFRNVEKRYGD--------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI-SLCGEPVPSRAR 76 (306)
T ss_pred ceEEEEeEEEEECC--------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEecccchH
Confidence 46999999999963 358999 99999999999999999999999999999999999999 8876
Q ss_pred ----EEEEEecCCCCCC-CcHHHHHhc-CCCC--Ch----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHH
Q 001091 660 ----KKAYVPQSSWIQT-GTIRENILF-GKDM--RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1159)
Q Consensus 660 ----~iayv~Q~pwi~~-gTIreNIlf-G~~~--d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQ 727 (1159)
++|||||+|-++. .|++||+.| +.-+ +. ++.+++++.++|.+ ..++.+ .+|||||||
T Consensus 77 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~----~~LS~G~~q 145 (306)
T PRK13537 77 HARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN-------KADAKV----GELSGGMKR 145 (306)
T ss_pred HHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------HhcCch----hhCCHHHHH
Confidence 4899999998875 799999985 3221 21 23345555555432 223333 479999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHH
Q 001091 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1159)
Q Consensus 728 RIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~e 805 (1159)
|++||||+.++|++++|||||++||+...+.+.+ .+..+. +|+|+|++||+++.++. ||+|++|++|++++.|+.++
T Consensus 146 rl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~-~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~ 224 (306)
T PRK13537 146 RLTLARALVNDPDVLVLDEPTTGLDPQARHLMWE-RLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHA 224 (306)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999877654 566654 48999999999999865 99999999999999999999
Q ss_pred HHh
Q 001091 806 LIA 808 (1159)
Q Consensus 806 L~~ 808 (1159)
+.+
T Consensus 225 l~~ 227 (306)
T PRK13537 225 LIE 227 (306)
T ss_pred HHh
Confidence 876
No 188
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-35 Score=328.60 Aligned_cols=203 Identities=24% Similarity=0.330 Sum_probs=169.9
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC-----CCCcEEEECC---
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~-----~~G~i~~v~g--- 659 (1159)
..++++|++++|+. .++++| ||++++||+++|+|++|||||||+++|.|+++| .+|+| .++|
T Consensus 20 ~~l~i~nl~~~~~~--------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i-~~~g~~i 90 (276)
T PRK14271 20 PAMAAVNLTLGFAG--------KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDV-LLGGRSI 90 (276)
T ss_pred cEEEEeeEEEEECC--------EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEE-EECCEEc
Confidence 35899999999963 468999 999999999999999999999999999999986 69998 7765
Q ss_pred -----------EEEEEecCCCCCCCcHHHHHhcCCC----CChHHH----HHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 -----------KKAYVPQSSWIQTGTIRENILFGKD----MRQSFY----EEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 -----------~iayv~Q~pwi~~gTIreNIlfG~~----~d~~~y----~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.++|++|+|.+++.|++|||.++.. .+++.+ .+.++.+++.+.+ .+.......+
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~ 163 (276)
T PRK14271 91 FNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFR 163 (276)
T ss_pred cccchhHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCccc
Confidence 3799999999999999999998632 222222 3344555543322 2334567789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEeCCeEEE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e 799 (1159)
||||||||++||||++++|+++||||||++||+.+.+.+.+ .+..+.+++|+|+|||+++.+. .||+|++|++|+|++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~ 242 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEE-FIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVE 242 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999877654 5666656789999999999875 499999999999999
Q ss_pred ecChHHHHh
Q 001091 800 SGKYEDLIA 808 (1159)
Q Consensus 800 ~Gt~~eL~~ 808 (1159)
.|+.+++.+
T Consensus 243 ~g~~~~~~~ 251 (276)
T PRK14271 243 EGPTEQLFS 251 (276)
T ss_pred eCCHHHHHh
Confidence 999999876
No 189
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=2.7e-35 Score=319.04 Aligned_cols=186 Identities=26% Similarity=0.439 Sum_probs=156.4
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++++|+.+ .++++| ||++++|++++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 2 l~~~~l~~~~~~~-------~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 2 IEFHNVSKAYPGG-------VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV-RIAGEDVNRLRGRQ 73 (214)
T ss_pred EEEEeeeEEeCCC-------ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcccCCHHH
Confidence 6899999999532 468999 99999999999999999999999999999999999998 7655
Q ss_pred ------EEEEEecCCCCCC-CcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHH
Q 001091 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1159)
Q Consensus 660 ------~iayv~Q~pwi~~-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQ 725 (1159)
.++|++|+|.++. .|++||+.++.. ++ +++.++.++..++.+.+... ..+|||||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~ 142 (214)
T TIGR02673 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAF-----------PEQLSGGE 142 (214)
T ss_pred HHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHH
Confidence 3799999999885 699999987632 11 34556677777765544433 35899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCe
Q 001091 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1159)
Q Consensus 726 KQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~ 796 (1159)
|||++||||++++|+++||||||++||+.+...+.+ .++.+. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 143 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 143 QQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILD-LLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999876654 565543 48999999999999875 99999999985
No 190
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-35 Score=324.67 Aligned_cols=198 Identities=19% Similarity=0.341 Sum_probs=164.8
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|+++.|++ .+++++ |+++++|++++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 5 ~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~ 75 (255)
T PRK11300 5 LLSVSGLMMRFGG--------LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI-LLRGQHIEGLPGH 75 (255)
T ss_pred eEEEeeEEEEECC--------EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceE-EECCEECCCCCHH
Confidence 5899999999963 468999 99999999999999999999999999999999999998 7766
Q ss_pred -----EEEEEecCCCCCCC-cHHHHHhcCCC-----------C-----C---h---HHHHHHHHHhccchHHHhccCCCC
Q 001091 660 -----KKAYVPQSSWIQTG-TIRENILFGKD-----------M-----R---Q---SFYEEVLEGCALNQDIEMWADGDL 711 (1159)
Q Consensus 660 -----~iayv~Q~pwi~~g-TIreNIlfG~~-----------~-----d---~---~~y~~vl~ac~L~~dl~~lp~Gd~ 711 (1159)
.++|++|+|.++.+ |++|||.++.. + + + ++.++.++.. |..
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~ 144 (255)
T PRK11300 76 QIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV-----------GLL 144 (255)
T ss_pred HHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC-----------Chh
Confidence 27899999999875 99999998631 0 0 0 1122222322 333
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-C-CcEEEEEccCcccccc-cCE
Q 001091 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDA-ADL 788 (1159)
Q Consensus 712 T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~-~kTvIlVTH~l~~l~~-aD~ 788 (1159)
.....+..+||||||||++||||++.+|+++||||||++||+.+.+.+. +.+..+. + ++|+|++||+++.++. ||+
T Consensus 145 ~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~L~~~~~~~~~tii~~sH~~~~~~~~~d~ 223 (255)
T PRK11300 145 EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELD-ELIAELRNEHNVTVLLIEHDMKLVMGISDR 223 (255)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHH-HHHHHHHhhcCCEEEEEeCCHHHHHHhCCE
Confidence 3455677899999999999999999999999999999999999977664 4565554 3 7899999999999865 999
Q ss_pred EEEEeCCeEEEecChHHHHh
Q 001091 789 VLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 789 Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
|++|++|++++.|+.+++.+
T Consensus 224 i~~l~~g~i~~~~~~~~~~~ 243 (255)
T PRK11300 224 IYVVNQGTPLANGTPEEIRN 243 (255)
T ss_pred EEEEECCeEEecCCHHHHhh
Confidence 99999999999999988765
No 191
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=3.7e-35 Score=321.13 Aligned_cols=195 Identities=31% Similarity=0.422 Sum_probs=155.9
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|++++|+... ...+++++ |+++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 2 l~~~~v~~~~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 76 (228)
T cd03257 2 LEVKNLSVSFPTGG----GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSI-IFDGKDLLKLSRRL 76 (228)
T ss_pred eEEEeeeEeccCCC----cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEccccchhh
Confidence 68999999996420 11368999 99999999999999999999999999999999999998 7655
Q ss_pred ------EEEEEecCCC--C-CCCcHHHHHhcCCC-----CChHHHH----HHHHHhccchHHHhccCCCCccccCCCCCC
Q 001091 660 ------KKAYVPQSSW--I-QTGTIRENILFGKD-----MRQSFYE----EVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1159)
Q Consensus 660 ------~iayv~Q~pw--i-~~gTIreNIlfG~~-----~d~~~y~----~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~L 721 (1159)
.++|++|+|. + .+.|++|||.++.. .+++..+ +.++..++. ......+..+|
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~L 146 (228)
T cd03257 77 RKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLP----------EEVLNRYPHEL 146 (228)
T ss_pred HHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCC----------hhHhhCCchhc
Confidence 4899999993 3 46899999986521 1111111 233333331 12345666889
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCccccc-ccCEEEEEeCCeEE
Q 001091 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1159)
Q Consensus 722 SGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~ 798 (1159)
|||||||++||||++++|+++||||||++||+++.+.+. +.++.+.+ |+|+|++||+++.++ .||+|++|++|+++
T Consensus 147 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 225 (228)
T cd03257 147 SGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQIL-DLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIV 225 (228)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEE
Confidence 999999999999999999999999999999999977664 45666543 799999999999987 59999999999998
Q ss_pred Eec
Q 001091 799 QSG 801 (1159)
Q Consensus 799 e~G 801 (1159)
+.|
T Consensus 226 ~~g 228 (228)
T cd03257 226 EEG 228 (228)
T ss_pred ecC
Confidence 765
No 192
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-35 Score=324.55 Aligned_cols=197 Identities=25% Similarity=0.395 Sum_probs=165.9
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++++|++ .+++++ |+++++|++++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 3 l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (255)
T PRK11231 3 LRTENLTVGYGT--------KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV-FLGDKPISMLSSRQ 73 (255)
T ss_pred EEEEeEEEEECC--------EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEE-EECCEEhHHCCHHH
Confidence 789999999963 468999 99999999999999999999999999999999999998 7776
Q ss_pred ---EEEEEecCCCCCCC-cHHHHHhcCCC-----C------ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHH
Q 001091 660 ---KKAYVPQSSWIQTG-TIRENILFGKD-----M------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1159)
Q Consensus 660 ---~iayv~Q~pwi~~g-TIreNIlfG~~-----~------d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGG 724 (1159)
.++|++|++.++.+ |++||+.++.. + ++++.+++++.+++.+.. ......||||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G 142 (255)
T PRK11231 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLA-----------DRRLTDLSGG 142 (255)
T ss_pred HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHH-----------cCCcccCCHH
Confidence 38999999988866 99999998631 1 122444555555554322 2456789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeCCeEEEecC
Q 001091 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGK 802 (1159)
Q Consensus 725 QKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt 802 (1159)
||||++||||+.++|+++||||||++||+++.+.+. +.+..+. +++|+|++||+++.++ .||+|++|++|++++.|+
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 221 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELM-RLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcC
Confidence 999999999999999999999999999999977665 4565543 4899999999999875 599999999999999999
Q ss_pred hHHHHh
Q 001091 803 YEDLIA 808 (1159)
Q Consensus 803 ~~eL~~ 808 (1159)
++++..
T Consensus 222 ~~~~~~ 227 (255)
T PRK11231 222 PEEVMT 227 (255)
T ss_pred HHHhcC
Confidence 998865
No 193
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=6.8e-35 Score=323.98 Aligned_cols=197 Identities=28% Similarity=0.381 Sum_probs=164.8
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|+++.|+. .+.++| ||++++||.++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 1 i~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~i~~~~~~~ 71 (252)
T TIGR03005 1 VRFSDVTKRFGI--------LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQI-QVEGEQLYHMPGRN 71 (252)
T ss_pred CEEEEEEEEeCC--------eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEcccccccc
Confidence 478999999963 368999 99999999999999999999999999999999999998 6654
Q ss_pred ----------------EEEEEecCCCCCC-CcHHHHHhcCCC----CC----hHHHHHHHHHhccchHHHhccCCCCccc
Q 001091 660 ----------------KKAYVPQSSWIQT-GTIRENILFGKD----MR----QSFYEEVLEGCALNQDIEMWADGDLSVV 714 (1159)
Q Consensus 660 ----------------~iayv~Q~pwi~~-gTIreNIlfG~~----~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~I 714 (1159)
.++|++|++.++. .|++||+.++.. .+ +++.++.++..++.+. .
T Consensus 72 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~ 140 (252)
T TIGR03005 72 GPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADK-----------A 140 (252)
T ss_pred ccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhH-----------h
Confidence 3899999998874 899999987521 12 1234445555554332 3
Q ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCccccc-ccCEEEE
Q 001091 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLV 791 (1159)
Q Consensus 715 Ge~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~-~aD~Iiv 791 (1159)
.....+||||||||++||||+.++|+++||||||++||+.+.+.+. +.+..+.+ ++|+|++||+++.+. .||++++
T Consensus 141 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~ 219 (252)
T TIGR03005 141 DHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVL-NVIRRLASEHDLTMLLVTHEMGFAREFADRVCF 219 (252)
T ss_pred hcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEE
Confidence 4455789999999999999999999999999999999999977665 45665543 799999999999985 5999999
Q ss_pred EeCCeEEEecChHHHHh
Q 001091 792 MKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 792 l~~G~I~e~Gt~~eL~~ 808 (1159)
|++|++++.|+++++.+
T Consensus 220 l~~G~i~~~g~~~~~~~ 236 (252)
T TIGR03005 220 FDKGRIVEQGKPDEIFR 236 (252)
T ss_pred EECCEEEEeCCHHHHhc
Confidence 99999999999999876
No 194
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-35 Score=328.55 Aligned_cols=198 Identities=27% Similarity=0.433 Sum_probs=166.8
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++++|+.. .++++| ||+|++||.++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 2 l~~~~l~~~~~~~-------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (275)
T PRK13639 2 LETRDLKYSYPDG-------TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV-LIKGEPIKYDKKSL 73 (275)
T ss_pred EEEEEEEEEeCCC-------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEE-EECCEECccccchH
Confidence 6899999999632 468999 99999999999999999999999999999999999998 7765
Q ss_pred -----EEEEEecCC--CCCCCcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHH
Q 001091 660 -----KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1159)
Q Consensus 660 -----~iayv~Q~p--wi~~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQ 725 (1159)
.++|++|+| .+++.|++|||.++.. .+ +++..++++.++|.... .....+|||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LS~Gq 142 (275)
T PRK13639 74 LEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-----------NKPPHHLSGGQ 142 (275)
T ss_pred HHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-----------cCChhhCCHHH
Confidence 279999997 6788999999988642 11 13445566666664221 12356899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeCCeEEEecCh
Q 001091 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803 (1159)
Q Consensus 726 KQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~ 803 (1159)
|||++||||+..+|+++||||||++||+.+.+.+.+ .+..+. +++|+|++||+++.+. .||+|++|++|++++.|+.
T Consensus 143 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~ 221 (275)
T PRK13639 143 KKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMK-LLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTP 221 (275)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999877654 566654 4899999999999986 5999999999999999999
Q ss_pred HHHHh
Q 001091 804 EDLIA 808 (1159)
Q Consensus 804 ~eL~~ 808 (1159)
+++.+
T Consensus 222 ~~~~~ 226 (275)
T PRK13639 222 KEVFS 226 (275)
T ss_pred HHHhc
Confidence 99876
No 195
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-35 Score=323.20 Aligned_cols=203 Identities=22% Similarity=0.338 Sum_probs=169.6
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc--C---CCCcEEEECC---
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--R---ISGAAIKVHG--- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~--~---~~G~i~~v~g--- 659 (1159)
+.|+++|++++|++ .++++| |++|++||.++|+|++|||||||+++|.|+++ | ++|+| .++|
T Consensus 3 ~~l~~~nl~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v-~~~g~~i 73 (252)
T PRK14256 3 NKVKLEQLNVHFGK--------NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKI-LLDDTDI 73 (252)
T ss_pred cEEEEEEEEEEeCC--------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEE-EECCEEc
Confidence 46899999999963 368999 99999999999999999999999999999986 3 58988 6655
Q ss_pred ------------EEEEEecCCCCCC-CcHHHHHhcCCC----CC----hHHHHHHHHHhccchHHHhccCCCCccccCCC
Q 001091 660 ------------KKAYVPQSSWIQT-GTIRENILFGKD----MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1159)
Q Consensus 660 ------------~iayv~Q~pwi~~-gTIreNIlfG~~----~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G 718 (1159)
.++|++|++.++. .|++|||.++.. .+ +++.++.++.+++...++. ..+..+
T Consensus 74 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~ 146 (252)
T PRK14256 74 YDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNA 146 (252)
T ss_pred ccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCc
Confidence 3899999999887 699999987521 22 2345566666776543332 123457
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEeCCeE
Q 001091 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1159)
Q Consensus 719 ~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I 797 (1159)
.+||||||||++||||++.+|+++||||||++||+.+.+.+. +.++.+.+++|+|++||+++.++ .||++++|++|+|
T Consensus 147 ~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 225 (252)
T PRK14256 147 MELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIE-ELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDL 225 (252)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEE
Confidence 799999999999999999999999999999999999977664 46776667799999999999985 5999999999999
Q ss_pred EEecChHHHHh
Q 001091 798 EQSGKYEDLIA 808 (1159)
Q Consensus 798 ~e~Gt~~eL~~ 808 (1159)
++.|+.+++..
T Consensus 226 ~~~~~~~~~~~ 236 (252)
T PRK14256 226 VECGETKKIFT 236 (252)
T ss_pred EEeCCHHHHHh
Confidence 99999999876
No 196
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=7.4e-35 Score=331.90 Aligned_cols=199 Identities=32% Similarity=0.473 Sum_probs=165.0
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
..|+++|++++|++ .+++++ ||++++|++++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 3 ~~i~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~ 73 (303)
T TIGR01288 3 VAIDLVGVSKSYGD--------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI-TVLGEPVPSRAR 73 (303)
T ss_pred cEEEEEeEEEEeCC--------eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECcccHH
Confidence 35899999999963 358999 99999999999999999999999999999999999999 7765
Q ss_pred ----EEEEEecCCCCC-CCcHHHHHhc-CCC--CCh----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHH
Q 001091 660 ----KKAYVPQSSWIQ-TGTIRENILF-GKD--MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1159)
Q Consensus 660 ----~iayv~Q~pwi~-~gTIreNIlf-G~~--~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQ 727 (1159)
.++|++|++.++ +.|++||+.+ +.. .++ ++.+++++.++|.+. . ..+..+|||||||
T Consensus 74 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~-------~----~~~~~~LSgG~~q 142 (303)
T TIGR01288 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-------A----DVRVALLSGGMKR 142 (303)
T ss_pred HHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhH-------h----cCchhhCCHHHHH
Confidence 489999999887 4799999975 221 222 223344554444322 2 2334579999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeCCeEEEecChHH
Q 001091 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYED 805 (1159)
Q Consensus 728 RIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~e 805 (1159)
|++||||+.++|+++||||||++||+.+.+.+.+ .+..+. +|+|+|++||+++.+. .||+|++|++|++++.|+.++
T Consensus 143 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 221 (303)
T TIGR01288 143 RLTLARALINDPQLLILDEPTTGLDPHARHLIWE-RLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHA 221 (303)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999877654 565543 5899999999999986 499999999999999999999
Q ss_pred HHh
Q 001091 806 LIA 808 (1159)
Q Consensus 806 L~~ 808 (1159)
+.+
T Consensus 222 ~~~ 224 (303)
T TIGR01288 222 LID 224 (303)
T ss_pred HHh
Confidence 865
No 197
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-35 Score=320.71 Aligned_cols=197 Identities=29% Similarity=0.383 Sum_probs=167.8
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|++++|+. .+++++ |+++++|+.++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~--------~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i-~~~g~~~~~~~~~~ 71 (232)
T cd03300 1 IELENVSKFYGG--------FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI-LLDGKDITNLPPHK 71 (232)
T ss_pred CEEEeEEEEeCC--------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEcCcCChhh
Confidence 468999999963 368999 99999999999999999999999999999999999998 7865
Q ss_pred -EEEEEecCCCCCCC-cHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHH
Q 001091 660 -KKAYVPQSSWIQTG-TIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1159)
Q Consensus 660 -~iayv~Q~pwi~~g-TIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIa 730 (1159)
.++||+|++-++.+ |++||+.++.. .+ +++.+++++..++.+.+... ..+||||||||++
T Consensus 72 ~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~ 140 (232)
T cd03300 72 RPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRK-----------PSQLSGGQQQRVA 140 (232)
T ss_pred cceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHH
Confidence 48999999999865 99999987632 12 34556666666665544433 3699999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHHHH
Q 001091 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807 (1159)
Q Consensus 731 LARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~ 807 (1159)
||||++++|+++||||||++||+.+.+.+ .+.+..+.+ ++|+|++||+++.++. ||+|++|++|++.+.|+++++.
T Consensus 141 laral~~~p~llllDEP~~gLD~~~~~~l-~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 141 IARALVNEPKVLLLDEPLGALDLKLRKDM-QLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 99999999999999999999999998765 455666543 8999999999999765 9999999999999999998887
Q ss_pred h
Q 001091 808 A 808 (1159)
Q Consensus 808 ~ 808 (1159)
+
T Consensus 220 ~ 220 (232)
T cd03300 220 E 220 (232)
T ss_pred h
Confidence 6
No 198
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.8e-35 Score=317.22 Aligned_cols=186 Identities=32% Similarity=0.472 Sum_probs=153.9
Q ss_pred EEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-----------
Q 001091 592 DIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (1159)
Q Consensus 592 ~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g----------- 659 (1159)
+++|+++.|+.. ..+++++ ||++++|++++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 1 ~~~~l~~~~~~~------~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~~ 73 (211)
T cd03225 1 ELKNLSFSYPDG------ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEV-LVDGKDLTKLSLKEL 73 (211)
T ss_pred CceeEEEecCCC------CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEEcccCCHHHH
Confidence 367899999642 2468999 99999999999999999999999999999999999999 7766
Q ss_pred --EEEEEecCC--CCCCCcHHHHHhcCCC---CCh----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHH
Q 001091 660 --KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1159)
Q Consensus 660 --~iayv~Q~p--wi~~gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQR 728 (1159)
.++|++|+| .+++.|++||+.++.. ++. ++.++.++..+|.+.+ ..+..+||||||||
T Consensus 74 ~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qr 142 (211)
T cd03225 74 RRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLR-----------DRSPFTLSGGQKQR 142 (211)
T ss_pred HhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCHHHHHH
Confidence 379999998 4678999999987632 222 2344555555554333 24457899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCe
Q 001091 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1159)
Q Consensus 729 IaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~ 796 (1159)
++||||++++|+++||||||++||+.+.+.+.+ .+..+. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 143 v~laral~~~p~llllDEPt~~LD~~~~~~~~~-~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 143 VAIAGVLAMDPDILLLDEPTAGLDPAGRRELLE-LLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999887765 565554 48999999999999876 99999999985
No 199
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=8.3e-35 Score=333.77 Aligned_cols=216 Identities=22% Similarity=0.357 Sum_probs=172.3
Q ss_pred ccEEEeeeEEEeCCcccc-----cCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---
Q 001091 589 VAIDIEAGEYAWDAREEN-----FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~-----~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--- 659 (1159)
..++++|++.+|+..... .+....+++| ||+|++||.++|+|++|||||||+++|+|+++|.+|+| .++|
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I-~~~G~~i 85 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEV-AWLGKDL 85 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEE-EECCEEC
Confidence 468999999999742100 0012468999 99999999999999999999999999999999999998 7765
Q ss_pred -------------EEEEEecCCC--CC-CCcHHHHHhcCC-----CCCh----HHHHHHHHHhccchHHHhccCCCCccc
Q 001091 660 -------------KKAYVPQSSW--IQ-TGTIRENILFGK-----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVV 714 (1159)
Q Consensus 660 -------------~iayv~Q~pw--i~-~gTIreNIlfG~-----~~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~I 714 (1159)
+++||+|+|. ++ ..||+|||.++. ..++ ++.++.++..+|.++. .
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~----------~ 155 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNL----------I 155 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH----------h
Confidence 4899999983 54 689999997532 2332 2334556666664321 2
Q ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccccc-cCEEEE
Q 001091 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLV 791 (1159)
Q Consensus 715 Ge~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~~-aD~Iiv 791 (1159)
......|||||||||+||||++.+|+++|+||||||||+.+.+.+.+ .++.+.+ +.|+|+|||+++.+.. ||+|++
T Consensus 156 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l~~~~~~til~iTHdl~~~~~~~dri~v 234 (331)
T PRK15079 156 NRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVN-LLQQLQREMGLSLIFIAHDLAVVKHISDRVLV 234 (331)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 34456899999999999999999999999999999999999888765 5655543 7899999999999875 999999
Q ss_pred EeCCeEEEecChHHHHhhcchHHHH
Q 001091 792 MKDGKIEQSGKYEDLIADQNSELVR 816 (1159)
Q Consensus 792 l~~G~I~e~Gt~~eL~~~~~~~~~~ 816 (1159)
|++|+|++.|+.+++.++....|.+
T Consensus 235 l~~G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 235 MYLGHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred EECCEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999999998734444544
No 200
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=9.3e-35 Score=325.11 Aligned_cols=213 Identities=24% Similarity=0.311 Sum_probs=167.9
Q ss_pred cEEEeeeEEEeCCccc-ccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 590 AIDIEAGEYAWDAREE-NFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~-~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
.++++|++++|+.... ......++++| ||++++||+++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~ 80 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTV-SFRGQDLYQLDR 80 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEccccCH
Confidence 3789999999963200 00012568999 99999999999999999999999999999999999998 7765
Q ss_pred --------EEEEEecCCC--C-CCCcHHHHHhcCC----CCCh----HHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 --------KKAYVPQSSW--I-QTGTIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 --------~iayv~Q~pw--i-~~gTIreNIlfG~----~~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.++|++|+|- + .+.|++|||.++. .++. ++.+++++..++..+ ....++.+
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~ 150 (265)
T TIGR02769 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSE----------DADKLPRQ 150 (265)
T ss_pred HHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChh----------hhhCChhh
Confidence 3899999973 3 3579999997542 1222 233444444444321 23456779
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCccccc-ccCEEEEEeCCeE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~-~aD~Iivl~~G~I 797 (1159)
||||||||++||||++++|+++||||||++||+.+.+.+. +.+..+.+ ++|+|+|||+++.+. .||+|++|++|++
T Consensus 151 LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 229 (265)
T TIGR02769 151 LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVIL-ELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQI 229 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEE
Confidence 9999999999999999999999999999999999977654 55666543 899999999999986 5999999999999
Q ss_pred EEecChHHHHhhcchHHH
Q 001091 798 EQSGKYEDLIADQNSELV 815 (1159)
Q Consensus 798 ~e~Gt~~eL~~~~~~~~~ 815 (1159)
++.|+.+++.. ....+.
T Consensus 230 ~~~g~~~~~~~-~~~~~~ 246 (265)
T TIGR02769 230 VEECDVAQLLS-FKHPAG 246 (265)
T ss_pred EEECCHHHHcC-CCCHHH
Confidence 99999999986 333333
No 201
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=322.67 Aligned_cols=203 Identities=24% Similarity=0.347 Sum_probs=173.2
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC-----CCCcEEEECC---
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~-----~~G~i~~v~g--- 659 (1159)
..+.+++.++.|.+ .+.+++ ||++++||+++|+|++|||||||+++|.|+++| .+|+| .++|
T Consensus 7 ~~~~~~~~~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i-~~~g~~i 77 (261)
T PRK14263 7 IVMDCKLDKIFYGN--------FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHV-HFLGQDV 77 (261)
T ss_pred ceEEEEeEEEEeCC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEE-EECCEec
Confidence 46888999998853 468999 999999999999999999999999999999986 79998 7765
Q ss_pred ------------EEEEEecCCCCCCCcHHHHHhcCCCC------ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCC
Q 001091 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1159)
Q Consensus 660 ------------~iayv~Q~pwi~~gTIreNIlfG~~~------d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~L 721 (1159)
.++|++|+|++++.|++|||.++..+ .+++.++.++..+|.+++.. ..++...+|
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~L 150 (261)
T PRK14263 78 YGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSL 150 (261)
T ss_pred cccccchHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccC
Confidence 37999999999999999999987431 12456777777777665542 234677899
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEe-------
Q 001091 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMK------- 793 (1159)
Q Consensus 722 SGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~------- 793 (1159)
|||||||++||||+.++|+++||||||++||+.+.+.+.+ .++.+.+++|+|++||+++.++ .||+|++|+
T Consensus 151 S~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~-~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~ 229 (261)
T PRK14263 151 SGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEE-LMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGT 229 (261)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEeccccccc
Confidence 9999999999999999999999999999999999887654 5666656799999999999875 599999996
Q ss_pred -CCeEEEecChHHHHh
Q 001091 794 -DGKIEQSGKYEDLIA 808 (1159)
Q Consensus 794 -~G~I~e~Gt~~eL~~ 808 (1159)
+|++++.|+++++.+
T Consensus 230 ~~G~i~~~g~~~~~~~ 245 (261)
T PRK14263 230 RTGYLVEMGPTAQIFQ 245 (261)
T ss_pred CCceEEEeCCHHHHHh
Confidence 899999999999876
No 202
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=5.5e-35 Score=306.00 Aligned_cols=158 Identities=35% Similarity=0.591 Sum_probs=143.6
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|++++|+.. ..+.+++ |+++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 1 i~~~~l~~~~~~~------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 73 (173)
T cd03246 1 LEVENVSFRYPGA------EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV-RLDGADISQWDPNE 73 (173)
T ss_pred CEEEEEEEEcCCC------CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE-EECCEEcccCCHHH
Confidence 4689999999753 2468999 99999999999999999999999999999999999998 7776
Q ss_pred ---EEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 001091 660 ---KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1159)
Q Consensus 660 ---~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly 736 (1159)
.++|++|+|+++++|++||+ ||||||||++||||+.
T Consensus 74 ~~~~i~~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~ 112 (173)
T cd03246 74 LGDHVGYLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALY 112 (173)
T ss_pred HHhheEEECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHh
Confidence 48999999999999999998 9999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEEEEEeCCeE
Q 001091 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1159)
Q Consensus 737 ~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~Iivl~~G~I 797 (1159)
++|+++||||||++||+++.+.+.+ .++.+. +++|+|++||+++.+..||+|++|++|++
T Consensus 113 ~~p~~lllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 113 GNPRILVLDEPNSHLDVEGERALNQ-AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred cCCCEEEEECCccccCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999999887755 555543 48999999999999988999999999975
No 203
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=327.57 Aligned_cols=204 Identities=22% Similarity=0.331 Sum_probs=167.8
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc-----CCCCcEEEECC--
Q 001091 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG-- 659 (1159)
Q Consensus 588 ~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~-----~~~G~i~~v~g-- 659 (1159)
+..++++|++++|+. .++++| |++|++||+++|+||+|||||||+++|.|..+ |.+|+| .++|
T Consensus 37 ~~~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I-~~~g~~ 107 (286)
T PRK14275 37 KPHVVAKNFSIYYGE--------FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGAL-MFDGED 107 (286)
T ss_pred ceEEEEeeeEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEE-EECCEE
Confidence 346899999999963 358999 99999999999999999999999999999854 489998 6654
Q ss_pred -------------EEEEEecCCCCCCCcHHHHHhcCCCC----Ch----HHHHHHHHHhccchHHHhccCCCCccccCCC
Q 001091 660 -------------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1159)
Q Consensus 660 -------------~iayv~Q~pwi~~gTIreNIlfG~~~----d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G 718 (1159)
.++|++|+|.++..|++|||.++... ++ ++..++++..++.+.+. .....+.
T Consensus 108 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~ 180 (286)
T PRK14275 108 IYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNA 180 (286)
T ss_pred hhhcccchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCCh
Confidence 48999999999989999999986421 11 12234444444432221 1234567
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeCCeE
Q 001091 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1159)
Q Consensus 719 ~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I 797 (1159)
..||||||||++||||++++|+++||||||++||+++.+.+. +.++.+.+++|+|++||+++.+.. ||+|++|++|++
T Consensus 181 ~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~-~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i 259 (286)
T PRK14275 181 LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIE-DLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVL 259 (286)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 899999999999999999999999999999999999977665 467666667899999999999764 999999999999
Q ss_pred EEecChHHHHh
Q 001091 798 EQSGKYEDLIA 808 (1159)
Q Consensus 798 ~e~Gt~~eL~~ 808 (1159)
++.|+++++.+
T Consensus 260 ~~~g~~~~~~~ 270 (286)
T PRK14275 260 VEHAPTAQLFT 270 (286)
T ss_pred EEeCCHHHHHh
Confidence 99999999876
No 204
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-34 Score=318.90 Aligned_cols=203 Identities=21% Similarity=0.335 Sum_probs=163.4
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|+++.|++ .+.+++ |+++++||.++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 5 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~ 75 (237)
T PRK11614 5 MLSFDKVSAHYGK--------IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI-VFDGKDITDWQTA 75 (237)
T ss_pred EEEEEeEEEeeCC--------ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceE-EECCEecCCCCHH
Confidence 4889999999963 468999 99999999999999999999999999999999999998 7765
Q ss_pred -----EEEEEecCCCCCC-CcHHHHHhcCCCC-ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHH
Q 001091 660 -----KKAYVPQSSWIQT-GTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1159)
Q Consensus 660 -----~iayv~Q~pwi~~-gTIreNIlfG~~~-d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLA 732 (1159)
.++|++|++-++. .|++|||.++..+ +.+..++.++. -++.++..+++ ......+||||||||++||
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~l~~~~~l~~~-~~~~~~~LS~G~~qrl~la 149 (237)
T PRK11614 76 KIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKW-----VYELFPRLHER-RIQRAGTMSGGEQQMLAIG 149 (237)
T ss_pred HHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHH-----HHHHHHHHHHH-HhCchhhCCHHHHHHHHHH
Confidence 3899999998887 4999999886532 22222221111 11122111111 2345678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccc-cccCEEEEEeCCeEEEecChHHHHh
Q 001091 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 733 RAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
||++++|+|+||||||++||+.+.+.+.+ .++.+. +++|+|++||+++.+ ..||+|++|++|++++.|+++++..
T Consensus 150 ~al~~~p~illlDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFD-TIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHHHhCCCEEEEcCccccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999776654 565554 489999999999876 5599999999999999999999865
No 205
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=8.4e-35 Score=339.68 Aligned_cols=198 Identities=26% Similarity=0.448 Sum_probs=170.0
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|++++|++ .+++++ ||++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 3 ~L~~~nls~~y~~--------~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I-~l~G~~i~~~~~~ 73 (402)
T PRK09536 3 MIDVSDLSVEFGD--------TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV-LVAGDDVEALSAR 73 (402)
T ss_pred eEEEeeEEEEECC--------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEE-EECCEEcCcCCHH
Confidence 4889999999963 468999 99999999999999999999999999999999999999 8876
Q ss_pred ----EEEEEecCCCC-CCCcHHHHHhcCCC-----C------ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCH
Q 001091 660 ----KKAYVPQSSWI-QTGTIRENILFGKD-----M------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1159)
Q Consensus 660 ----~iayv~Q~pwi-~~gTIreNIlfG~~-----~------d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSG 723 (1159)
+++||+|++-+ ++.|++||+.+|.. + ++++.+++++..++.+..+ ....+|||
T Consensus 74 ~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-----------~~~~~LSg 142 (402)
T PRK09536 74 AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-----------RPVTSLSG 142 (402)
T ss_pred HHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-----------CChhhCCH
Confidence 38999999987 78999999998752 1 2345566667666654332 23568999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccc-cccCEEEEEeCCeEEEec
Q 001091 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 724 GQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~G 801 (1159)
|||||++||||++++|+++||||||++||+.....+. +.++.+. +++|+|++||+++.+ +.||+|++|++|++++.|
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~-~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G 221 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTL-ELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEec
Confidence 9999999999999999999999999999999977765 4566554 488999999999998 559999999999999999
Q ss_pred ChHHHHh
Q 001091 802 KYEDLIA 808 (1159)
Q Consensus 802 t~~eL~~ 808 (1159)
+++|++.
T Consensus 222 ~~~ev~~ 228 (402)
T PRK09536 222 PPADVLT 228 (402)
T ss_pred CHHHHhC
Confidence 9999876
No 206
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=319.83 Aligned_cols=198 Identities=21% Similarity=0.372 Sum_probs=164.4
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|++++|++ .++++| ||++++|++++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 73 (241)
T PRK10895 3 TLTAKNLAKAYKG--------RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI-IIDDEDISLLPLH 73 (241)
T ss_pred eEEEeCcEEEeCC--------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCHH
Confidence 3789999999963 368999 99999999999999999999999999999999999998 7765
Q ss_pred -----EEEEEecCCCCCC-CcHHHHHhcCCCC----Ch----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHH
Q 001091 660 -----KKAYVPQSSWIQT-GTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1159)
Q Consensus 660 -----~iayv~Q~pwi~~-gTIreNIlfG~~~----d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQ 725 (1159)
.++|++|++-++. .|++||+.++... ++ ++.++.++..++ ......+..+|||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~ 142 (241)
T PRK10895 74 ARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHI-----------EHLRDSMGQSLSGGE 142 (241)
T ss_pred HHHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCC-----------HHHhhcchhhCCHHH
Confidence 3899999998887 5999999876322 21 123333333332 233456678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeCCeEEEecCh
Q 001091 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803 (1159)
Q Consensus 726 KQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~ 803 (1159)
|||++||||+.++|+++||||||++||+.+.+.+. +.+..+. +|+|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 143 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~ 221 (241)
T PRK10895 143 RRRVEIARALAANPKFILLDEPFAGVDPISVIDIK-RIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTP 221 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCH
Confidence 99999999999999999999999999999977664 4565544 4899999999998764 5999999999999999999
Q ss_pred HHHHh
Q 001091 804 EDLIA 808 (1159)
Q Consensus 804 ~eL~~ 808 (1159)
+++.+
T Consensus 222 ~~~~~ 226 (241)
T PRK10895 222 TEILQ 226 (241)
T ss_pred HHHhc
Confidence 98865
No 207
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-34 Score=325.10 Aligned_cols=197 Identities=21% Similarity=0.301 Sum_probs=164.3
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++++|++ .+++++ |+++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 2 l~~~~l~~~~~~--------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~~ 72 (271)
T PRK13638 2 LATSDLWFRYQD--------EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAV-LWQGKPLDYSKRGL 72 (271)
T ss_pred eEEEEEEEEcCC--------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEE-EECCEEcccccCCH
Confidence 678999999963 358999 99999999999999999999999999999999999998 7655
Q ss_pred -----EEEEEecCCC--CCCCcHHHHHhcCCC---CCh----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHH
Q 001091 660 -----KKAYVPQSSW--IQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1159)
Q Consensus 660 -----~iayv~Q~pw--i~~gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQ 725 (1159)
.++|++|+|. ++..|+.||+.++.. .++ ++.+++++..+|.+.. .....+|||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~ 141 (271)
T PRK13638 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-----------HQPIQCLSHGQ 141 (271)
T ss_pred HHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-----------cCCchhCCHHH
Confidence 3799999985 677899999987521 222 2234455555554322 23457899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeCCeEEEecCh
Q 001091 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803 (1159)
Q Consensus 726 KQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~ 803 (1159)
|||++||||+..+|+++||||||++||+.+.+.+. +.+..+. +|+|+|++||+++.+. .||+|++|++|++++.|+.
T Consensus 142 ~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~ 220 (271)
T PRK13638 142 KKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMI-AIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAP 220 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999987765 4565553 4899999999999985 4999999999999999999
Q ss_pred HHHHh
Q 001091 804 EDLIA 808 (1159)
Q Consensus 804 ~eL~~ 808 (1159)
+++..
T Consensus 221 ~~~~~ 225 (271)
T PRK13638 221 GEVFA 225 (271)
T ss_pred HHHhc
Confidence 98875
No 208
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=323.74 Aligned_cols=200 Identities=20% Similarity=0.279 Sum_probs=167.7
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-------
Q 001091 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1159)
Q Consensus 588 ~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g------- 659 (1159)
...|+++|++++|++ ..++++ ||++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 5 ~~~l~i~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~ 75 (265)
T PRK10253 5 VARLRGEQLTLGYGK--------YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHV-WLDGEHIQHYA 75 (265)
T ss_pred ccEEEEEEEEEEECC--------EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEE-EECCEEhhhCC
Confidence 346999999999963 358999 99999999999999999999999999999999999999 8776
Q ss_pred ------EEEEEecCCCCC-CCcHHHHHhcCC-CC----------ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCC
Q 001091 660 ------KKAYVPQSSWIQ-TGTIRENILFGK-DM----------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1159)
Q Consensus 660 ------~iayv~Q~pwi~-~gTIreNIlfG~-~~----------d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~L 721 (1159)
.++|++|++-++ +.|++||+.++. +. ++++.+++++..+|.+. ......+|
T Consensus 76 ~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~L 144 (265)
T PRK10253 76 SKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL-----------ADQSVDTL 144 (265)
T ss_pred HHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-----------hcCCcccC
Confidence 389999999876 579999998762 11 12244555555555432 23456799
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEeCCeEE
Q 001091 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1159)
Q Consensus 722 SGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~ 798 (1159)
|||||||++||||++++|+++||||||++||+.+.+++.+ .+..+. +++|+|++||+++.+. .||+|++|++|+++
T Consensus 145 S~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~-~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 223 (265)
T PRK10253 145 SGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLE-LLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIV 223 (265)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999887755 565554 3789999999999875 59999999999999
Q ss_pred EecChHHHHh
Q 001091 799 QSGKYEDLIA 808 (1159)
Q Consensus 799 e~Gt~~eL~~ 808 (1159)
+.|+.+++..
T Consensus 224 ~~g~~~~~~~ 233 (265)
T PRK10253 224 AQGAPKEIVT 233 (265)
T ss_pred EeCCHHHHhh
Confidence 9999998865
No 209
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-34 Score=321.17 Aligned_cols=197 Identities=26% Similarity=0.424 Sum_probs=166.4
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|+++.|+. .+++++ ||++++|++++|+|++|||||||+++|.|+.+|.+|+| .++|
T Consensus 3 l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i-~~~g~~~~~~~~~~ 73 (258)
T PRK13548 3 LEARNLSVRLGG--------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV-RLNGRPLADWSPAE 73 (258)
T ss_pred EEEEeEEEEeCC--------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-EECCEEcccCCHHH
Confidence 789999999963 358999 99999999999999999999999999999999999999 7766
Q ss_pred ---EEEEEecCCCC-CCCcHHHHHhcCCC-C------ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHH
Q 001091 660 ---KKAYVPQSSWI-QTGTIRENILFGKD-M------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1159)
Q Consensus 660 ---~iayv~Q~pwi-~~gTIreNIlfG~~-~------d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQR 728 (1159)
.++|++|++.+ ++.|++||+.++.. . ++++.++.++..++.+.. ......||||||||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGe~qr 142 (258)
T PRK13548 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLA-----------GRDYPQLSGGEQQR 142 (258)
T ss_pred hhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHh-----------cCCcccCCHHHHHH
Confidence 27999999987 77899999988642 1 123345555655554322 23457999999999
Q ss_pred HHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEeCCeEEE
Q 001091 729 IQLARAVY------SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1159)
Q Consensus 729 IaLARAly------~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e 799 (1159)
++||||++ .+|+++||||||++||+.+.+++. +.++.+. +++|+|++||+++.+. .||+|++|++|++++
T Consensus 143 v~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 221 (258)
T PRK13548 143 VQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVL-RLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVA 221 (258)
T ss_pred HHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999 599999999999999999987665 5666654 4899999999999886 599999999999999
Q ss_pred ecChHHHHh
Q 001091 800 SGKYEDLIA 808 (1159)
Q Consensus 800 ~Gt~~eL~~ 808 (1159)
.|+++++.+
T Consensus 222 ~~~~~~~~~ 230 (258)
T PRK13548 222 DGTPAEVLT 230 (258)
T ss_pred eCCHHHHhC
Confidence 999998865
No 210
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.1e-34 Score=319.13 Aligned_cols=197 Identities=36% Similarity=0.470 Sum_probs=164.9
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|++++|++ .++++| |+++.+||.++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 1 i~i~~l~~~~~~--------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i-~i~g~~~~~~~~~~ 71 (237)
T TIGR00968 1 IEIANISKRFGS--------FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRI-RLNGQDATRVHARD 71 (237)
T ss_pred CEEEEEEEEECC--------eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEcCcCChhh
Confidence 478999999963 368999 99999999999999999999999999999999999998 7765
Q ss_pred -EEEEEecCCCCCCC-cHHHHHhcCCCC---C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHH
Q 001091 660 -KKAYVPQSSWIQTG-TIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1159)
Q Consensus 660 -~iayv~Q~pwi~~g-TIreNIlfG~~~---d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIa 730 (1159)
.++|+||+|-++.+ |++||+.++.+. + +++.+++++..++.+.. .....+||||||||++
T Consensus 72 ~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qrl~ 140 (237)
T TIGR00968 72 RKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLG-----------DRYPNQLSGGQRQRVA 140 (237)
T ss_pred cCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hCChhhCCHHHHHHHH
Confidence 48999999999875 999999886532 2 12334445554443322 2344689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHHHH
Q 001091 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807 (1159)
Q Consensus 731 LARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~ 807 (1159)
||||+.++|+++|||||+++||+++.+.+.+ .+..+.+ ++|+|++||+++.++. ||+|++|++|++++.|+.+++.
T Consensus 141 laral~~~p~llllDEP~~~LD~~~~~~~~~-~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 141 LARALAVEPQVLLLDEPFGALDAKVRKELRS-WLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999876654 5655443 7999999999998755 9999999999999999999987
Q ss_pred h
Q 001091 808 A 808 (1159)
Q Consensus 808 ~ 808 (1159)
+
T Consensus 220 ~ 220 (237)
T TIGR00968 220 D 220 (237)
T ss_pred c
Confidence 5
No 211
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.3e-34 Score=313.61 Aligned_cols=188 Identities=29% Similarity=0.438 Sum_probs=158.3
Q ss_pred EEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-----------
Q 001091 592 DIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (1159)
Q Consensus 592 ~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g----------- 659 (1159)
+++|+++.|+. .+++ |+++++|+.++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 2 ~~~~l~~~~~~----------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~~ 70 (213)
T TIGR01277 2 ALDKVRYEYEH----------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI-KVNDQSHTGLAPYQR 70 (213)
T ss_pred eEEeeeEEeCC----------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEEcccCChhcc
Confidence 68899999852 2458 99999999999999999999999999999999999999 7766
Q ss_pred EEEEEecCCCCCC-CcHHHHHhcCC-C-C-----ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHH
Q 001091 660 KKAYVPQSSWIQT-GTIRENILFGK-D-M-----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1159)
Q Consensus 660 ~iayv~Q~pwi~~-gTIreNIlfG~-~-~-----d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaL 731 (1159)
.++|++|+|.++. .|++||+.++. + . ++++.+++++..++.+.....| .+||||||||++|
T Consensus 71 ~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 139 (213)
T TIGR01277 71 PVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVAL 139 (213)
T ss_pred ceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHH
Confidence 3899999999887 59999998642 1 1 2345666777777765444444 3899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccc-cCEEEEEeCCeEEEecC
Q 001091 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1159)
Q Consensus 732 ARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt 802 (1159)
|||++++|+++||||||++||+.+.+.+.+ .+..+. .++|+|+|||+.+.++. ||+|++|++|++++.|.
T Consensus 140 aral~~~p~llllDEPt~~LD~~~~~~~~~-~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 140 ARCLVRPNPILLLDEPFSALDPLLREEMLA-LVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999887654 565554 37899999999998764 99999999999998874
No 212
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-34 Score=320.26 Aligned_cols=202 Identities=21% Similarity=0.351 Sum_probs=164.5
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCC-----CCcEEEECC----
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-----SGAAIKVHG---- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~-----~G~i~~v~g---- 659 (1159)
.++++|++++|++ .++++| ||++++||.++|+|++|||||||+++|.|+++|. +|+| .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~~~ 74 (252)
T PRK14272 4 LLSAQDVNIYYGD--------KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRI-LLDGQDIY 74 (252)
T ss_pred EEEEeeeEEEECC--------EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeE-EECCEEcc
Confidence 4789999999963 368999 9999999999999999999999999999999864 7988 7654
Q ss_pred -----------EEEEEecCCCCCC-CcHHHHHhcCCCC----ChH----HHHHHHHHhccchHHHhccCCCCccccCCCC
Q 001091 660 -----------KKAYVPQSSWIQT-GTIRENILFGKDM----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1159)
Q Consensus 660 -----------~iayv~Q~pwi~~-gTIreNIlfG~~~----d~~----~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~ 719 (1159)
.++|++|+|.++. .|++||+.++... +++ +.++.++..++.+.+ ++. ......
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~----~~~~~~ 147 (252)
T PRK14272 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDR----LKTPAT 147 (252)
T ss_pred cCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhh----hcCCcc
Confidence 4899999999887 5999999865321 222 222233333333222 111 234467
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeCCeEE
Q 001091 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1159)
Q Consensus 720 ~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~ 798 (1159)
+||||||||++||||+.++|+++||||||++||+.+.+.+. +.++.+.+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14272 148 GLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIE-DLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLV 226 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 89999999999999999999999999999999999977665 466666567999999999999875 9999999999999
Q ss_pred EecChHHHHh
Q 001091 799 QSGKYEDLIA 808 (1159)
Q Consensus 799 e~Gt~~eL~~ 808 (1159)
+.|+.+++.+
T Consensus 227 ~~~~~~~~~~ 236 (252)
T PRK14272 227 EHGPTDQLFT 236 (252)
T ss_pred EeCCHHHHHh
Confidence 9999999876
No 213
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=336.01 Aligned_cols=194 Identities=24% Similarity=0.420 Sum_probs=165.2
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
+++ |++++|++. .+ | ||++++||+++|+||+|||||||+++|.|+.+|++|+| .++|
T Consensus 2 l~~-~l~k~~~~~---------~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I-~~~g~~~~~~~~~~ 69 (352)
T PRK11144 2 LEL-NFKQQLGDL---------CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRI-VLNGRVLFDAEKGI 69 (352)
T ss_pred eEE-EEEEEeCCE---------EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEcccccccc
Confidence 455 788888532 22 7 99999999999999999999999999999999999998 6654
Q ss_pred -------EEEEEecCCCCCC-CcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHH
Q 001091 660 -------KKAYVPQSSWIQT-GTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1159)
Q Consensus 660 -------~iayv~Q~pwi~~-gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIa 730 (1159)
.++||+|++.++. .|++|||.|+.+ .++++.+++++..+|.+.++.. ..+||||||||++
T Consensus 70 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qRva 138 (352)
T PRK11144 70 CLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRY-----------PGSLSGGEKQRVA 138 (352)
T ss_pred ccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCC-----------cccCCHHHHHHHH
Confidence 3799999999885 699999999843 3456677788888776554443 4689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCccccc-ccCEEEEEeCCeEEEecChHHHH
Q 001091 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLI 807 (1159)
Q Consensus 731 LARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~ 807 (1159)
||||+.++|+++|||||||+||+++.+.+.+ .++.+.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 139 laraL~~~p~llLLDEPts~LD~~~~~~l~~-~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 139 IGRALLTAPELLLMDEPLASLDLPRKRELLP-YLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 9999999999999999999999999877654 4665543 789999999999765 59999999999999999999998
Q ss_pred h
Q 001091 808 A 808 (1159)
Q Consensus 808 ~ 808 (1159)
.
T Consensus 218 ~ 218 (352)
T PRK11144 218 A 218 (352)
T ss_pred h
Confidence 7
No 214
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=2.1e-34 Score=321.79 Aligned_cols=196 Identities=24% Similarity=0.386 Sum_probs=163.2
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCC---CCcEEEECC------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVHG------ 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~---~G~i~~v~g------ 659 (1159)
.++++|++++|++ .+++++ ||++++||+++|+||+|||||||+++|.|+++|. +|+| .++|
T Consensus 4 ~l~~~nl~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i-~~~g~~~~~~ 74 (262)
T PRK09984 4 IIRVEKLAKTFNQ--------HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHI-ELLGRTVQRE 74 (262)
T ss_pred EEEEeeEEEEeCC--------eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEE-EECCEecccc
Confidence 5899999999963 468999 9999999999999999999999999999999886 4888 6665
Q ss_pred ------------EEEEEecCCCCCC-CcHHHHHhcCCC------------CC---hHHHHHHHHHhccchHHHhccCCCC
Q 001091 660 ------------KKAYVPQSSWIQT-GTIRENILFGKD------------MR---QSFYEEVLEGCALNQDIEMWADGDL 711 (1159)
Q Consensus 660 ------------~iayv~Q~pwi~~-gTIreNIlfG~~------------~d---~~~y~~vl~ac~L~~dl~~lp~Gd~ 711 (1159)
.++|++|++.++. .|++||+.++.. .+ +++.+++++..+|.+.+
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------- 146 (262)
T PRK09984 75 GRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFA-------- 146 (262)
T ss_pred cccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHH--------
Confidence 3799999998877 599999987632 01 22344555555554322
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccc-cccCE
Q 001091 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFL-DAADL 788 (1159)
Q Consensus 712 T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l-~~aD~ 788 (1159)
.....+||||||||++||||++.+|+++||||||++||+++.+.+. +.++.+. +|+|+|++||+++.+ ..||+
T Consensus 147 ---~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tvii~tH~~~~~~~~~d~ 222 (262)
T PRK09984 147 ---HQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVM-DTLRDINQNDGITVVVTLHQVDYALRYCER 222 (262)
T ss_pred ---hCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 3455689999999999999999999999999999999999987664 5576654 379999999999986 55999
Q ss_pred EEEEeCCeEEEecChHHH
Q 001091 789 VLVMKDGKIEQSGKYEDL 806 (1159)
Q Consensus 789 Iivl~~G~I~e~Gt~~eL 806 (1159)
|++|++|++++.|+++++
T Consensus 223 i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 223 IVALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEEEECCEEEEeCCHHHh
Confidence 999999999999999986
No 215
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.5e-34 Score=319.45 Aligned_cols=197 Identities=22% Similarity=0.265 Sum_probs=159.3
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCc--cCCCCcEEEECCE-------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVHGK------- 660 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~--~~~~G~i~~v~g~------- 660 (1159)
++++|++++|++ .++++| ||++++||+++|+||+|||||||+++|.|.. +|++|+| .++|.
T Consensus 1 l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i-~~~g~~~~~~~~ 71 (243)
T TIGR01978 1 LKIKDLHVSVED--------KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTI-LFKGQDLLELEP 71 (243)
T ss_pred CeEeeEEEEECC--------EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceE-EECCEecCCCCH
Confidence 468999999963 368999 9999999999999999999999999999994 7999999 77662
Q ss_pred -------EEEEecCCCCCCC-cHHHHHhcCCC----------CC----hHHHHHHHHHhccchHHHhccCCCCccccCCC
Q 001091 661 -------KAYVPQSSWIQTG-TIRENILFGKD----------MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1159)
Q Consensus 661 -------iayv~Q~pwi~~g-TIreNIlfG~~----------~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G 718 (1159)
++|++|+|.++.+ |++||+.+... .+ +++.+++++..+|.+++ .....
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~ 141 (243)
T TIGR01978 72 DERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF----------LNRSV 141 (243)
T ss_pred HHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh----------ccccc
Confidence 7899999988775 89999976421 11 12334444545543221 11122
Q ss_pred C-CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc--cCEEEEEeC
Q 001091 719 I-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA--ADLVLVMKD 794 (1159)
Q Consensus 719 ~-~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~--aD~Iivl~~ 794 (1159)
. +||||||||++||||+.++|+++||||||++||+.+.+.+. +.+..+. +++|+|+|||+++.+.. ||+|++|++
T Consensus 142 ~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~ 220 (243)
T TIGR01978 142 NEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVA-EGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLD 220 (243)
T ss_pred ccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH-HHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeC
Confidence 2 49999999999999999999999999999999999987765 4566554 47999999999999875 799999999
Q ss_pred CeEEEecChHHHH
Q 001091 795 GKIEQSGKYEDLI 807 (1159)
Q Consensus 795 G~I~e~Gt~~eL~ 807 (1159)
|++++.|+++++.
T Consensus 221 G~i~~~g~~~~~~ 233 (243)
T TIGR01978 221 GRIVKSGDVELAK 233 (243)
T ss_pred CEEEEecCHHHhc
Confidence 9999999987654
No 216
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.3e-34 Score=322.37 Aligned_cols=197 Identities=22% Similarity=0.365 Sum_probs=164.7
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|+++.|++ .+++++ |+++++||.++|+|++|||||||+++|.|.++|.+|+| .++|
T Consensus 2 l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 72 (256)
T TIGR03873 2 LRLSRVSWSAGG--------RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTV-DLAGVDLHGLSRRA 72 (256)
T ss_pred ceEEeEEEEECC--------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEE-EECCEEcccCCHHH
Confidence 688999999963 468999 99999999999999999999999999999999999998 8876
Q ss_pred ---EEEEEecCCC-CCCCcHHHHHhcCCC-C----------ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHH
Q 001091 660 ---KKAYVPQSSW-IQTGTIRENILFGKD-M----------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1159)
Q Consensus 660 ---~iayv~Q~pw-i~~gTIreNIlfG~~-~----------d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGG 724 (1159)
.++|++|++. .+..|++||+.++.. . +.++.+++++.+++.+. .......||||
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G 141 (256)
T TIGR03873 73 RARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL-----------ADRDMSTLSGG 141 (256)
T ss_pred HhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHH
Confidence 3899999984 567899999988631 1 11234445555555322 23456789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeCCeEEEecC
Q 001091 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGK 802 (1159)
Q Consensus 725 QKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt 802 (1159)
||||++||||++.+|+++||||||++||+++.+.+. +.++.+. +++|+|++||+++.++ .||+|++|++|++++.|+
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 220 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETL-ALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGP 220 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecC
Confidence 999999999999999999999999999999977664 4566554 4789999999999985 599999999999999999
Q ss_pred hHHHHh
Q 001091 803 YEDLIA 808 (1159)
Q Consensus 803 ~~eL~~ 808 (1159)
.+++.+
T Consensus 221 ~~~~~~ 226 (256)
T TIGR03873 221 PREVLT 226 (256)
T ss_pred HHHhhC
Confidence 998865
No 217
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-34 Score=317.94 Aligned_cols=196 Identities=33% Similarity=0.476 Sum_probs=165.9
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|+++.|+. . .+++ |++|++||+++|+|++|||||||+++|.|.++|++|+| .++|
T Consensus 1 l~~~~l~~~~~~--------~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v-~i~g~~~~~~~~~~ 70 (235)
T cd03299 1 LKVENLSKDWKE--------F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKI-LLNGKDITNLPPEK 70 (235)
T ss_pred CeeEeEEEEeCC--------c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCEEcCcCChhH
Confidence 468899999952 2 6999 99999999999999999999999999999999999999 8876
Q ss_pred -EEEEEecCCCCCC-CcHHHHHhcCCCC---C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHH
Q 001091 660 -KKAYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1159)
Q Consensus 660 -~iayv~Q~pwi~~-gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIa 730 (1159)
.++|++|++.++. .|++||+.++... + +++..+.++.++|.+.++. ...+||||||||++
T Consensus 71 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~ 139 (235)
T cd03299 71 RDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNR-----------KPETLSGGEQQRVA 139 (235)
T ss_pred cCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhc-----------CcccCCHHHHHHHH
Confidence 4899999998884 7999999876422 1 2234556666666554443 34689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHHHH
Q 001091 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807 (1159)
Q Consensus 731 LARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~ 807 (1159)
||||++++|++++|||||++||+.+.+.+. +.++.+.+ ++|+|++||+++.++. ||+|++|++|++++.|+++++.
T Consensus 140 laral~~~p~llllDEPt~gLD~~~~~~l~-~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 140 IARALVVNPKILLLDEPFSALDVRTKEKLR-EELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHHHHHcCCCEEEECCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999977664 45655543 8999999999999875 9999999999999999999887
Q ss_pred h
Q 001091 808 A 808 (1159)
Q Consensus 808 ~ 808 (1159)
+
T Consensus 219 ~ 219 (235)
T cd03299 219 K 219 (235)
T ss_pred h
Confidence 6
No 218
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1e-34 Score=314.34 Aligned_cols=186 Identities=32% Similarity=0.414 Sum_probs=154.5
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++++|+. .+.+++ ||++++|+.++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (213)
T cd03262 1 IEIKNLHKSFGD--------FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI-IIDGLKLTDDKKNI 71 (213)
T ss_pred CEEEEEEEEECC--------eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCccchhH
Confidence 468999999963 368999 99999999999999999999999999999999999998 7765
Q ss_pred -----EEEEEecCCCCCC-CcHHHHHhcCC----CCCh----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHH
Q 001091 660 -----KKAYVPQSSWIQT-GTIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1159)
Q Consensus 660 -----~iayv~Q~pwi~~-gTIreNIlfG~----~~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQ 725 (1159)
.++|++|+|.++. .|++||+.++. .++. ++.+++++.+++.+.+ .....+|||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~ 140 (213)
T cd03262 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKA-----------DAYPAQLSGGQ 140 (213)
T ss_pred HHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hhCccccCHHH
Confidence 2799999999886 69999998763 2222 2344455555554333 33457899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeE
Q 001091 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1159)
Q Consensus 726 KQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I 797 (1159)
|||++||||+.++|+++||||||++||+.+.+.+. +.+..+. +++|+|++||+++.++. ||+|++|++|+|
T Consensus 141 ~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 141 QQRVAIARALAMNPKVMLFDEPTSALDPELVGEVL-DVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999977665 4566554 47999999999999865 999999999975
No 219
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-34 Score=321.44 Aligned_cols=202 Identities=24% Similarity=0.381 Sum_probs=169.7
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC-----CCCcEEEECC----
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~-----~~G~i~~v~g---- 659 (1159)
.++++|+++.|++ .+++++ |+++++||.++|+|++|||||||+++|.|+++| ++|+| .++|
T Consensus 7 ~l~~~~l~~~~~~--------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i-~~~g~~i~ 77 (259)
T PRK14260 7 AIKVKDLSFYYNT--------SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVV-DFFGQNIY 77 (259)
T ss_pred eEEEEEEEEEECC--------eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEE-EECCEecc
Confidence 5899999999963 358999 999999999999999999999999999999985 48988 6654
Q ss_pred -----------EEEEEecCCCCCCCcHHHHHhcCCC----CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 -----------KKAYVPQSSWIQTGTIRENILFGKD----MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 -----------~iayv~Q~pwi~~gTIreNIlfG~~----~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.++|++|+|.+++.|++|||.++.. ++ +++.+++++.+++.++++.. ....+..
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~ 150 (259)
T PRK14260 78 DPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK-------LNKSALG 150 (259)
T ss_pred ccccchHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH-------hcCCccc
Confidence 3899999999999999999987532 12 23345666667775544322 3456789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEe-----C
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMK-----D 794 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~-----~ 794 (1159)
||||||||++||||+.++|+++||||||++||+.+.+.+. +.++.+.+++|+|++||+++.++. ||++++|+ +
T Consensus 151 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~ 229 (259)
T PRK14260 151 LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVE-ELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRI 229 (259)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCC
Confidence 9999999999999999999999999999999999977665 456666667999999999999865 99999997 5
Q ss_pred CeEEEecChHHHHh
Q 001091 795 GKIEQSGKYEDLIA 808 (1159)
Q Consensus 795 G~I~e~Gt~~eL~~ 808 (1159)
|++++.|+.+++.+
T Consensus 230 G~i~~~~~~~~~~~ 243 (259)
T PRK14260 230 GQMVEFGVTTQIFS 243 (259)
T ss_pred ceEEEeCCHHHHhc
Confidence 99999999999865
No 220
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.4e-34 Score=315.33 Aligned_cols=189 Identities=23% Similarity=0.321 Sum_probs=155.9
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|+++.|+.+ .++++| ||++++|+.++|+||+|||||||+++|.|+++|++|+| .++|
T Consensus 2 l~~~~l~~~~~~~-------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~i~~~~~~~ 73 (222)
T PRK10908 2 IRFEHVSKAYLGG-------RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI-WFSGHDITRLKNRE 73 (222)
T ss_pred EEEEeeEEEecCC-------CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEcccCChhH
Confidence 6889999999532 468999 99999999999999999999999999999999999998 7765
Q ss_pred ------EEEEEecCCCC-CCCcHHHHHhcCCC---CChH----HHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHH
Q 001091 660 ------KKAYVPQSSWI-QTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1159)
Q Consensus 660 ------~iayv~Q~pwi-~~gTIreNIlfG~~---~d~~----~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQ 725 (1159)
.++|++|+|.+ ++.|++|||.++.. .+++ +.++.++..++.+++. ....+|||||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~ 142 (222)
T PRK10908 74 VPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK-----------NFPIQLSGGE 142 (222)
T ss_pred HHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCchhCCHHH
Confidence 37999999986 67899999988632 2221 2334455555543332 3456899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeEEE
Q 001091 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1159)
Q Consensus 726 KQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e 799 (1159)
|||++||||++++|+++||||||++||+.+.+.+.+ +++.+. +++|+|++||+++.++. ||+|++|++|+++.
T Consensus 143 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 143 QQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILR-LFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999776654 565553 47899999999999876 89999999999863
No 221
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-34 Score=319.69 Aligned_cols=202 Identities=23% Similarity=0.337 Sum_probs=166.1
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc--C---CCCcEEEECC----
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--R---ISGAAIKVHG---- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~--~---~~G~i~~v~g---- 659 (1159)
.|+++|+++.|+. .+.+++ |+++++||+++|+|++|||||||+++|.|..+ | ++|+| .++|
T Consensus 5 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~~~ 75 (252)
T PRK14255 5 IITSSDVHLFYGK--------FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNV-SLRGQNIY 75 (252)
T ss_pred eEEEEeEEEEECC--------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEE-EEcCEEcc
Confidence 4899999999963 368999 99999999999999999999999999999865 4 58988 6655
Q ss_pred -----------EEEEEecCCCCCCCcHHHHHhcCCCC----Ch----HHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 -----------~iayv~Q~pwi~~gTIreNIlfG~~~----d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.++|++|+|.+++.|++|||.++... ++ ++..+.++.+++...+ .........+
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~ 148 (252)
T PRK14255 76 APNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALS 148 (252)
T ss_pred cccccHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCccc
Confidence 38999999999999999999875321 11 2233444444443222 1234556789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeCCeEEE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e 799 (1159)
||||||||++||||++++|+++||||||++||+++.+.+. +.+..+.+++|+|+|||+++.++. ||+|++|++|++++
T Consensus 149 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14255 149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIE-NMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIE 227 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999987765 456666667899999999999864 99999999999999
Q ss_pred ecChHHHHh
Q 001091 800 SGKYEDLIA 808 (1159)
Q Consensus 800 ~Gt~~eL~~ 808 (1159)
.|+.++...
T Consensus 228 ~~~~~~~~~ 236 (252)
T PRK14255 228 FADTKQMFL 236 (252)
T ss_pred eCCHHHHhc
Confidence 999888765
No 222
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.8e-33 Score=349.21 Aligned_cols=197 Identities=23% Similarity=0.337 Sum_probs=161.8
Q ss_pred CcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCC---CCcEEEECCE----------EEEEecCCCCCC-Cc
Q 001091 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVHGK----------KAYVPQSSWIQT-GT 674 (1159)
Q Consensus 610 ~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~---~G~i~~v~g~----------iayv~Q~pwi~~-gT 674 (1159)
++++|+| |+++++||+++|+||+||||||||++|.|+.++. +|+| .++|. ++||+|+++++. .|
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i-~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSV-LLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEE-EECCEECCHHHHhhhceeeccccccCccCc
Confidence 4679999 9999999999999999999999999999999874 7998 88884 599999999985 69
Q ss_pred HHHHHhcCCCCCh----HHHHHHHHHhccchHHHhccCCCCccccCC--CCCCCHHHHHHHHHHHHHccCCCEEEEeCCC
Q 001091 675 IRENILFGKDMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGER--GINLSGGQKQRIQLARAVYSNSDVYIFDDPF 748 (1159)
Q Consensus 675 IreNIlfG~~~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~--G~~LSGGQKQRIaLARAly~~a~I~LLDDp~ 748 (1159)
|||||.|+..+.. .+.++..+.+.+-+++ .+++..+|.||+. +..||||||||++||||++++|++++|||||
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQAL-GLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHc-CchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 9999998754321 1112221222222222 2355678999985 4899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcc--cccccCEEEEEeCCeEEEecChHHHHh
Q 001091 749 SAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE--FLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 749 SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~--~l~~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
|+||++++.++.+.+.+-..+|+|+|++||+++ ..+.+|+|++|++|++++.|+++|+.+
T Consensus 195 sgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred cchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 999999999987754333335899999999996 367899999999999999999999865
No 223
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2.4e-34 Score=313.70 Aligned_cols=194 Identities=24% Similarity=0.328 Sum_probs=164.9
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------E
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------K 660 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------~ 660 (1159)
++++|++++|+. .+++++ ||++++||.++|+||+|||||||+++|.|+++|.+|+| .++| .
T Consensus 1 l~l~~v~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~~~~~~~~~~~~ 71 (223)
T TIGR03740 1 LETKNLSKRFGK--------QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI-IFDGHPWTRKDLHK 71 (223)
T ss_pred CEEEeEEEEECC--------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEecccccccc
Confidence 468999999963 368999 99999999999999999999999999999999999999 7766 4
Q ss_pred EEEEecCCCCCC-CcHHHHHhcCC---CCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 001091 661 KAYVPQSSWIQT-GTIRENILFGK---DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1159)
Q Consensus 661 iayv~Q~pwi~~-gTIreNIlfG~---~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly 736 (1159)
++|++|++-++. .|++||+.++. ..++++.++.++..++++..+ ....+||||||||++||||++
T Consensus 72 ~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rv~laral~ 140 (223)
T TIGR03740 72 IGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGK-----------KKAKQFSLGMKQRLGIAIALL 140 (223)
T ss_pred EEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHh-----------hhHhhCCHHHHHHHHHHHHHh
Confidence 799999998775 69999998643 234566677777777764332 234689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeCCeEEEecChHH
Q 001091 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYED 805 (1159)
Q Consensus 737 ~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~e 805 (1159)
.+|+++||||||++||+.+.+.+ .+.+..+. +++|+|++||+++.++ .||+|++|++|++++.|+.++
T Consensus 141 ~~p~llllDEP~~~LD~~~~~~l-~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 141 NHPKLLILDEPTNGLDPIGIQEL-RELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred cCCCEEEECCCccCCCHHHHHHH-HHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999997765 45666554 4789999999999985 599999999999999998764
No 224
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.8e-34 Score=331.81 Aligned_cols=199 Identities=30% Similarity=0.456 Sum_probs=166.1
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
..|+++|++++|++ ..+++| ||+|++|+.++++||+|||||||+++|+|+++|++|+| .++|
T Consensus 40 ~~i~i~nl~k~y~~--------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i-~i~G~~~~~~~~ 110 (340)
T PRK13536 40 VAIDLAGVSKSYGD--------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI-TVLGVPVPARAR 110 (340)
T ss_pred eeEEEEEEEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEE-EECCEECCcchH
Confidence 46999999999963 368999 99999999999999999999999999999999999999 8876
Q ss_pred ----EEEEEecCCCCC-CCcHHHHHhc-CCCC--Ch----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHH
Q 001091 660 ----KKAYVPQSSWIQ-TGTIRENILF-GKDM--RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1159)
Q Consensus 660 ----~iayv~Q~pwi~-~gTIreNIlf-G~~~--d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQ 727 (1159)
.++|+||++.++ +.|++||+.| +.-+ +. ++.+++++.++|. +..++ +..+|||||||
T Consensus 111 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~-------~~~~~----~~~~LS~G~kq 179 (340)
T PRK13536 111 LARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-------SKADA----RVSDLSGGMKR 179 (340)
T ss_pred HHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-------hhhCC----ChhhCCHHHHH
Confidence 389999999885 6799999975 3211 21 2334445544443 22233 34589999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHH
Q 001091 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1159)
Q Consensus 728 RIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~e 805 (1159)
|++||||+.++|+++||||||++||+.+.+.+.+ .+..+. +|+|+|++||+++.+.. ||+|++|++|+|+..|+.++
T Consensus 180 rv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~-~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~ 258 (340)
T PRK13536 180 RLTLARALINDPQLLILDEPTTGLDPHARHLIWE-RLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHA 258 (340)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999877654 565543 48999999999999865 99999999999999999999
Q ss_pred HHh
Q 001091 806 LIA 808 (1159)
Q Consensus 806 L~~ 808 (1159)
+.+
T Consensus 259 l~~ 261 (340)
T PRK13536 259 LID 261 (340)
T ss_pred HHh
Confidence 876
No 225
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-34 Score=320.55 Aligned_cols=203 Identities=26% Similarity=0.374 Sum_probs=169.4
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC-----CCCcEEEECC---
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~-----~~G~i~~v~g--- 659 (1159)
..|+++|+++.|+. .+++++ |+++++||.++|+||+|||||||+++|.|..++ .+|+| .++|
T Consensus 19 ~~l~~~nl~~~~~~--------~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~l 89 (274)
T PRK14265 19 SVFEVEGVKVFYGG--------FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRL-LYRDRNI 89 (274)
T ss_pred ceEEEeeEEEEeCC--------eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceE-EECCEec
Confidence 46999999999963 358999 999999999999999999999999999999863 58988 6654
Q ss_pred ------------EEEEEecCCCCCCCcHHHHHhcCCC---CC---hHHHHHHHHHhccchHHHhccCCCCccccCCCCCC
Q 001091 660 ------------KKAYVPQSSWIQTGTIRENILFGKD---MR---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1159)
Q Consensus 660 ------------~iayv~Q~pwi~~gTIreNIlfG~~---~d---~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~L 721 (1159)
.++|++|++.+++.|++|||.++.. ++ ++..++.++.+++.+.+.. ........|
T Consensus 90 ~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~L 162 (274)
T PRK14265 90 YDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTAL 162 (274)
T ss_pred ccccchhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccC
Confidence 4899999999999999999988642 11 2233455666666544331 234667899
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEe-------
Q 001091 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMK------- 793 (1159)
Q Consensus 722 SGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~------- 793 (1159)
|||||||++||||++++|+++||||||++||+.+.+.+. +.+..+.+++|+|++||+++.+. .||+|++|+
T Consensus 163 SgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~ 241 (274)
T PRK14265 163 SGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVE-ELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYG 241 (274)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeccccccc
Confidence 999999999999999999999999999999999977664 46666666799999999999885 599999997
Q ss_pred --CCeEEEecChHHHHh
Q 001091 794 --DGKIEQSGKYEDLIA 808 (1159)
Q Consensus 794 --~G~I~e~Gt~~eL~~ 808 (1159)
+|++++.|+.+|+..
T Consensus 242 ~~~G~~~~~g~~~~~~~ 258 (274)
T PRK14265 242 KRRGKLVEFSPTEQMFG 258 (274)
T ss_pred ccCceEEEeCCHHHHHh
Confidence 899999999999875
No 226
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-34 Score=318.45 Aligned_cols=192 Identities=27% Similarity=0.427 Sum_probs=160.7
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------EE
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------KK 661 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------~i 661 (1159)
++++|+++.|++ .++++| |+++++|++++|+||+|||||||+++|.|.++|++|+| .++| .+
T Consensus 2 l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~ 72 (255)
T PRK11248 2 LQISHLYADYGG--------KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI-TLDGKPVEGPGAER 72 (255)
T ss_pred EEEEEEEEEeCC--------eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCCcE
Confidence 688999999963 368999 99999999999999999999999999999999999999 8876 37
Q ss_pred EEEecCCCCCC-CcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHH
Q 001091 662 AYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1159)
Q Consensus 662 ayv~Q~pwi~~-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLAR 733 (1159)
+|++|++.++. .|++||+.++.. .+ +++.+++++..+|.+.. ..+..+||||||||++|||
T Consensus 73 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrl~lar 141 (255)
T PRK11248 73 GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAE-----------KRYIWQLSGGQRQRVGIAR 141 (255)
T ss_pred EEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------hCChhhCCHHHHHHHHHHH
Confidence 99999998876 699999987632 12 23445566666654332 2345789999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEe--CCeEEEecCh
Q 001091 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMK--DGKIEQSGKY 803 (1159)
Q Consensus 734 Aly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~--~G~I~e~Gt~ 803 (1159)
|+..+|+++||||||++||+.+.+.+.+ .+..+. .|+|+|++||+++.+. .||+|++|+ +|+|++.++.
T Consensus 142 al~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 142 ALAANPQLLLLDEPFGALDAFTREQMQT-LLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999776654 566553 3899999999999875 499999998 5999998765
No 227
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=8e-34 Score=315.65 Aligned_cols=200 Identities=25% Similarity=0.351 Sum_probs=168.3
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC----CCCcEEEECC-----
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR----ISGAAIKVHG----- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~----~~G~i~~v~g----- 659 (1159)
.++++|++++| + .+++++ |+++++||+++|+|++|||||||+++|.|+.+| ++|+| .++|
T Consensus 4 ~l~~~~l~~~~--~-------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i-~~~g~~i~~ 73 (254)
T PRK10418 4 QIELRNIALQA--A-------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRV-LLDGKPVAP 73 (254)
T ss_pred EEEEeCeEEEe--c-------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEE-EECCeeccc
Confidence 58999999999 2 358999 999999999999999999999999999999999 99998 7765
Q ss_pred ------EEEEEecCCC-CCC--CcHHHHHhc-----CCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHH
Q 001091 660 ------KKAYVPQSSW-IQT--GTIRENILF-----GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1159)
Q Consensus 660 ------~iayv~Q~pw-i~~--gTIreNIlf-----G~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQ 725 (1159)
.++||+|+|- .++ .|+.+|+.+ |.+.++++.++.++.++|.+. .+.++....+|||||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq 145 (254)
T PRK10418 74 CALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGM 145 (254)
T ss_pred cccccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHH
Confidence 4899999983 343 688888753 433345667777777776431 234566778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEeCCeEEEecC
Q 001091 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGK 802 (1159)
Q Consensus 726 KQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt 802 (1159)
|||++||||++++|+++||||||++||+.+.+.+. ++++.+. .|+|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 146 ~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~ 224 (254)
T PRK10418 146 LQRMMIALALLCEAPFIIADEPTTDLDVVAQARIL-DLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGD 224 (254)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHH-HHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999977664 4566554 3789999999999985 599999999999999999
Q ss_pred hHHHHh
Q 001091 803 YEDLIA 808 (1159)
Q Consensus 803 ~~eL~~ 808 (1159)
.+++.+
T Consensus 225 ~~~~~~ 230 (254)
T PRK10418 225 VETLFN 230 (254)
T ss_pred HHHHhh
Confidence 999876
No 228
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3e-34 Score=326.44 Aligned_cols=197 Identities=27% Similarity=0.428 Sum_probs=167.9
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++++|++ ..+++| ||++++||.++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 3 l~~~~l~~~~~~--------~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i-~i~g~~~~~~~~~~ 73 (301)
T TIGR03522 3 IRVSSLTKLYGT--------QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSV-QVCGEDVLQNPKEV 73 (301)
T ss_pred EEEEEEEEEECC--------EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEcccChHHH
Confidence 789999999963 358999 99999999999999999999999999999999999999 8876
Q ss_pred --EEEEEecCCCCCCC-cHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHH
Q 001091 660 --KKAYVPQSSWIQTG-TIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1159)
Q Consensus 660 --~iayv~Q~pwi~~g-TIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRI 729 (1159)
.++|+||+|.++.. |++||+.+... .+ .++.+++++..+|.+. ...+..+||||||||+
T Consensus 74 ~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv 142 (301)
T TIGR03522 74 QRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE-----------QHKKIGQLSKGYRQRV 142 (301)
T ss_pred HhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchH-----------hcCchhhCCHHHHHHH
Confidence 48999999999865 99999975332 12 2344555555555432 3355678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHHHHh
Q 001091 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 730 aLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
+||||+.++|++++|||||++||+.+.+.+.+ .+..+.+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+
T Consensus 143 ~la~al~~~p~lliLDEPt~gLD~~~~~~l~~-~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 143 GLAQALIHDPKVLILDEPTTGLDPNQLVEIRN-VIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999876654 56666678999999999998765 99999999999999999999865
No 229
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=5e-34 Score=318.11 Aligned_cols=202 Identities=21% Similarity=0.314 Sum_probs=162.6
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|+++.|++ .+++++ ||++++||+++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 6 ~l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~i~ 76 (258)
T PRK11701 6 LLSVRGLTKLYGP--------RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV-HYRMRDGQLRDLY 76 (258)
T ss_pred eEEEeeeEEEcCC--------ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-EECCccccccccc
Confidence 5899999999963 368999 99999999999999999999999999999999999998 6655
Q ss_pred -------------EEEEEecCCC---CCCCcHHHHHhcCC----CCC-hHHHHHHHHHhccchHHHhccCCCCccccCCC
Q 001091 660 -------------KKAYVPQSSW---IQTGTIRENILFGK----DMR-QSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1159)
Q Consensus 660 -------------~iayv~Q~pw---i~~gTIreNIlfG~----~~d-~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G 718 (1159)
.++|++|++. ..+.|++|||.+.. ..+ ++..+++ .+.++.++-+ .+..+..+
T Consensus 77 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~l~~~~l~-~~~~~~~~ 149 (258)
T PRK11701 77 ALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATA------GDWLERVEID-AARIDDLP 149 (258)
T ss_pred cCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHH------HHHHHHcCCC-hhHHhCCC
Confidence 2799999984 23468999986431 111 1111111 1223333221 13456778
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCccccc-ccCEEEEEeCC
Q 001091 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDG 795 (1159)
Q Consensus 719 ~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~-~aD~Iivl~~G 795 (1159)
.+||||||||++||||+.++|+++||||||++||+.+.+.+. ++++.+.+ |+|+|++||+++.++ .||+|++|++|
T Consensus 150 ~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g 228 (258)
T PRK11701 150 TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLL-DLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQG 228 (258)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 899999999999999999999999999999999999977665 45665543 789999999999997 59999999999
Q ss_pred eEEEecChHHHHh
Q 001091 796 KIEQSGKYEDLIA 808 (1159)
Q Consensus 796 ~I~e~Gt~~eL~~ 808 (1159)
++++.|+++++..
T Consensus 229 ~i~~~~~~~~~~~ 241 (258)
T PRK11701 229 RVVESGLTDQVLD 241 (258)
T ss_pred EEEEeCCHHHHhc
Confidence 9999999999875
No 230
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-34 Score=318.83 Aligned_cols=202 Identities=24% Similarity=0.378 Sum_probs=166.6
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC-----CCCcEEEECC----
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~-----~~G~i~~v~g---- 659 (1159)
.++++|++++|++ .+++++ |+++++||.++|+||+|||||||+++|.|.++| ++|+| .++|
T Consensus 4 ~l~i~~v~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I-~~~g~~~~ 74 (258)
T PRK14241 4 RIDVKDLNIYYGS--------FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEV-LLDGEDLY 74 (258)
T ss_pred cEEEeeEEEEECC--------EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEE-EECCEecc
Confidence 4899999999963 358999 999999999999999999999999999999974 69998 7755
Q ss_pred -----------EEEEEecCCCCCC-CcHHHHHhcCCCC----Ch----HHHHHHHHHhccchHHHhccCCCCccccCCCC
Q 001091 660 -----------KKAYVPQSSWIQT-GTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1159)
Q Consensus 660 -----------~iayv~Q~pwi~~-gTIreNIlfG~~~----d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~ 719 (1159)
.++|++|++-++. .|++||+.++... +. ++.+++++..++.+.++ ........
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 147 (258)
T PRK14241 75 GPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGG 147 (258)
T ss_pred ccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcc
Confidence 3899999998886 6999999875321 11 23344555555533221 22345677
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEe-----
Q 001091 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMK----- 793 (1159)
Q Consensus 720 ~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~----- 793 (1159)
+||||||||++||||+.++|+++||||||++||+.+.+.+ .+.+..+.+++|+|++||+++.+. .||+|++|+
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~ 226 (258)
T PRK14241 148 GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAI-EDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATG 226 (258)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCC
Confidence 8999999999999999999999999999999999997766 456766666799999999999875 599999996
Q ss_pred -CCeEEEecChHHHHh
Q 001091 794 -DGKIEQSGKYEDLIA 808 (1159)
Q Consensus 794 -~G~I~e~Gt~~eL~~ 808 (1159)
+|+|++.|+++++..
T Consensus 227 ~~g~i~~~~~~~~~~~ 242 (258)
T PRK14241 227 KPGRLVEIDDTEKIFS 242 (258)
T ss_pred CCceEEecCCHHHHHh
Confidence 899999999999865
No 231
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-34 Score=326.80 Aligned_cols=213 Identities=21% Similarity=0.323 Sum_probs=168.1
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC----CCCcEEEECC-----
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR----ISGAAIKVHG----- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~----~~G~i~~v~g----- 659 (1159)
.++++|++++|+... ....+++| ||+|++||.++|+|++|||||||+++|+|++++ ++|+| .++|
T Consensus 3 ~L~v~~l~~~~~~~~----~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i-~~~G~~i~~ 77 (326)
T PRK11022 3 LLNVDKLSVHFGDES----APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKL-EFNGQDLQR 77 (326)
T ss_pred eEEEeCeEEEECCCC----ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEE-EECCEECCc
Confidence 378999999997530 11458999 999999999999999999999999999999974 78998 7776
Q ss_pred ------------EEEEEecCCC---CCCCcHHHHHhcC----CCCC----hHHHHHHHHHhccchHHHhccCCCCccccC
Q 001091 660 ------------KKAYVPQSSW---IQTGTIRENILFG----KDMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1159)
Q Consensus 660 ------------~iayv~Q~pw---i~~gTIreNIlfG----~~~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe 716 (1159)
.++||+|+|. ...-|+.+|+... ...+ +++..+.++..+|.+.. ...+.
T Consensus 78 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~ 149 (326)
T PRK11022 78 ISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDV 149 (326)
T ss_pred CCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhC
Confidence 3899999985 2335777666432 1112 23445666666664321 12345
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEe
Q 001091 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMK 793 (1159)
Q Consensus 717 ~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~ 793 (1159)
...+|||||||||+||||+..+|+++|+||||||||+.+...+.+ .++.+. .|+|+|+|||+++.+. .||+|++|.
T Consensus 150 ~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~-lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~ 228 (326)
T PRK11022 150 YPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIE-LLLELQQKENMALVLITHDLALVAEAAHKIIVMY 228 (326)
T ss_pred CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 677999999999999999999999999999999999999887765 455554 3899999999999985 599999999
Q ss_pred CCeEEEecChHHHHhhcchHHHH
Q 001091 794 DGKIEQSGKYEDLIADQNSELVR 816 (1159)
Q Consensus 794 ~G~I~e~Gt~~eL~~~~~~~~~~ 816 (1159)
+|+|+|.|+.+++.++....|.+
T Consensus 229 ~G~ive~g~~~~~~~~p~hpyt~ 251 (326)
T PRK11022 229 AGQVVETGKAHDIFRAPRHPYTQ 251 (326)
T ss_pred CCEEEEECCHHHHhhCCCChHHH
Confidence 99999999999998744444543
No 232
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2.7e-34 Score=327.10 Aligned_cols=185 Identities=26% Similarity=0.394 Sum_probs=157.5
Q ss_pred cccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC------------EEEEEecCCCCCCC-cHH
Q 001091 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------KKAYVPQSSWIQTG-TIR 676 (1159)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g------------~iayv~Q~pwi~~g-TIr 676 (1159)
.++++| ||++++||+++|+||+|||||||+++|+|+++|++|+| .++| .++|++|++.++.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTA-RVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEcccCHHHHHhhcEEecCCCCCCCCCcHH
Confidence 468999 99999999999999999999999999999999999999 8876 38999999988765 999
Q ss_pred HHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q 001091 677 ENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (1159)
Q Consensus 677 eNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~S 749 (1159)
||+.+... .+ +++.+++++.++|.+..+ .+..+||||||||++||||+.++|+++||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAAD-----------RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-----------CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99987422 11 234566677776654322 3456899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHHHHh
Q 001091 750 AVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 750 ALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
+||+.+.+.+.+ .++.+. +|+|+|++||+++.+.. ||+|++|++|++++.|+.+++.+
T Consensus 154 gLD~~~~~~l~~-~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 154 GLDPRTRRAIWD-YIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCCHHHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 999999876654 565553 47999999999999864 99999999999999999999876
No 233
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-34 Score=315.97 Aligned_cols=203 Identities=24% Similarity=0.340 Sum_probs=167.1
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
+.++++|++++|++ .+.++| ||++++||.++|+|++|||||||+++|.|.++|.+|+| .++|
T Consensus 9 ~~i~~~~~~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v-~~~G~~~~~g~~ 79 (257)
T PRK14246 9 DVFNISRLYLYIND--------KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKI-KVDGKVLYFGKD 79 (257)
T ss_pred hheeeeeEEEecCC--------ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCce-eEcCEEEECCcc
Confidence 46999999999964 468999 99999999999999999999999999999999999776 5443
Q ss_pred -----------EEEEEecCCCCCCC-cHHHHHhcCCC---C-ChHHH----HHHHHHhccchHHHhccCCCCccccCCCC
Q 001091 660 -----------KKAYVPQSSWIQTG-TIRENILFGKD---M-RQSFY----EEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1159)
Q Consensus 660 -----------~iayv~Q~pwi~~g-TIreNIlfG~~---~-d~~~y----~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~ 719 (1159)
.++|++|+|-++.+ |++|||.++.. + +++.. ++.++..++.+.+ ....++.+.
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~ 152 (257)
T PRK14246 80 IFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPAS 152 (257)
T ss_pred cccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcc
Confidence 37999999998875 99999997632 1 22222 3334444443322 122355678
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEeCCeEE
Q 001091 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1159)
Q Consensus 720 ~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~ 798 (1159)
.||||||||++||||++++|+++||||||++||+.+.+.+ .+.+..+.+++|+|+|||+.++++ .||++++|++|+++
T Consensus 153 ~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~ 231 (257)
T PRK14246 153 QLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAI-EKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELV 231 (257)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHH-HHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 8999999999999999999999999999999999997765 456766666799999999999985 59999999999999
Q ss_pred EecChHHHHh
Q 001091 799 QSGKYEDLIA 808 (1159)
Q Consensus 799 e~Gt~~eL~~ 808 (1159)
+.|+.+++.+
T Consensus 232 ~~g~~~~~~~ 241 (257)
T PRK14246 232 EWGSSNEIFT 241 (257)
T ss_pred EECCHHHHHh
Confidence 9999999876
No 234
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=8.4e-34 Score=317.68 Aligned_cols=207 Identities=24% Similarity=0.360 Sum_probs=166.3
Q ss_pred cEEEeeeEEEeCCccccc-CCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 590 AIDIEAGEYAWDAREENF-KKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~-~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
.|+++|++++|+...... ....++++| |+++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~ 82 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEL-LIDDHPLHFGDY 82 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEE-EECCEECCCCch
Confidence 489999999996320000 012468999 99999999999999999999999999999999999999 7765
Q ss_pred -----EEEEEecCCC--CC-CCcHHHHHhcCCC----CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCH
Q 001091 660 -----KKAYVPQSSW--IQ-TGTIRENILFGKD----MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1159)
Q Consensus 660 -----~iayv~Q~pw--i~-~gTIreNIlfG~~----~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSG 723 (1159)
.++|++|+|- ++ +-|+.||+.++.. ++ +++.+++++.++|.++.. .....+|||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS~ 152 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA----------SYYPHMLAP 152 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH----------hcCchhcCH
Confidence 3899999984 33 4589999876421 22 234456677777643221 123458999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccc-cCEEEEEeCCeEEEe
Q 001091 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1159)
Q Consensus 724 GQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~ 800 (1159)
|||||++||||++++|+++||||||++||+++.+.+. +.+..+. .|+|+|++||+++.+.. ||+|++|++|++++.
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~ 231 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLI-NLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVER 231 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEec
Confidence 9999999999999999999999999999999977654 4566654 37899999999999876 999999999999999
Q ss_pred cChHHHHh
Q 001091 801 GKYEDLIA 808 (1159)
Q Consensus 801 Gt~~eL~~ 808 (1159)
|+++++.+
T Consensus 232 ~~~~~~~~ 239 (267)
T PRK15112 232 GSTADVLA 239 (267)
T ss_pred CCHHHHhc
Confidence 99999876
No 235
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-34 Score=324.78 Aligned_cols=216 Identities=21% Similarity=0.308 Sum_probs=170.7
Q ss_pred ccEEEeeeEEEeCCccccc--CCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC------
Q 001091 589 VAIDIEAGEYAWDAREENF--KKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------ 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~--~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g------ 659 (1159)
..++++|++++|+...... +....+++| ||+|++||+++|+|++|||||||+++|+|+.+|.+|+| .++|
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i-~~~g~~l~~~ 82 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGEL-YYQGQDLLKA 82 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEE-EECCEEcCcC
Confidence 3589999999997421000 012468999 99999999999999999999999999999999999998 7765
Q ss_pred ----------EEEEEecCCC--C-CCCcHHHHHhcCC----CCC----hHHHHHHHHHhccchHHHhccCCCCccccCCC
Q 001091 660 ----------KKAYVPQSSW--I-QTGTIRENILFGK----DMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1159)
Q Consensus 660 ----------~iayv~Q~pw--i-~~gTIreNIlfG~----~~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G 718 (1159)
+++||+|+|. + ...||.+|+..+. ..+ .++..+.++.++|.++. . ....
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~------~----~~~p 152 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEH------Y----DRYP 152 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHH------h----cCCC
Confidence 4899999983 3 3469999986321 122 23445666666664321 1 2345
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccc-cCEEEEEeCC
Q 001091 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDG 795 (1159)
Q Consensus 719 ~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G 795 (1159)
..|||||||||+||||+..+|+++|+||||++||+.+.+.+++ .+..+. .|.|+|+|||+++.+.. ||+|++|.+|
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~-lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G 231 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLN-LMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLG 231 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 6899999999999999999999999999999999999888866 455554 38999999999999875 9999999999
Q ss_pred eEEEecChHHHHhhcchHHHH
Q 001091 796 KIEQSGKYEDLIADQNSELVR 816 (1159)
Q Consensus 796 ~I~e~Gt~~eL~~~~~~~~~~ 816 (1159)
+|+|.|+.+++.++....|.+
T Consensus 232 ~ive~g~~~~~~~~p~hpyt~ 252 (327)
T PRK11308 232 RCVEKGTKEQIFNNPRHPYTQ 252 (327)
T ss_pred EEEEECCHHHHhcCCCCHHHH
Confidence 999999999998733444544
No 236
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=6.7e-34 Score=315.12 Aligned_cols=197 Identities=25% Similarity=0.393 Sum_probs=169.6
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--EEEEEec
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQ 666 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--~iayv~Q 666 (1159)
.++++|+++.|++ .+++++ ||++++||.++|+||+|||||||+++|.|+.+|.+|+| .+++ .++|++|
T Consensus 4 ~l~~~~l~~~~~~--------~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i-~~~~~~~i~~v~q 74 (251)
T PRK09544 4 LVSLENVSVSFGQ--------RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-KRNGKLRIGYVPQ 74 (251)
T ss_pred EEEEeceEEEECC--------ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCccCEEEecc
Confidence 4889999999963 358999 99999999999999999999999999999999999999 8876 5999999
Q ss_pred CCCCCC---CcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q 001091 667 SSWIQT---GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYI 743 (1159)
Q Consensus 667 ~pwi~~---gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~L 743 (1159)
+|.++. .|+++|+.+....++++.+++++.++|.+.++ .....||||||||++||||++++|+++|
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrv~laral~~~p~lll 143 (251)
T PRK09544 75 KLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLID-----------APMQKLSGGETQRVLLARALLNRPQLLV 143 (251)
T ss_pred ccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 987754 48999997765555677788888888765443 2356899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCccccc-ccCEEEEEeCCeEEEecChHHHHh
Q 001091 744 FDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 744 LDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
|||||++||+.+.+.+. +.+..+.+ ++|+|++||+++.+. .||+|++|++ +|++.|+++++.+
T Consensus 144 LDEPt~~LD~~~~~~l~-~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 144 LDEPTQGVDVNGQVALY-DLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred EeCCCcCCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 99999999999987765 45655543 799999999999975 5999999965 7999999999865
No 237
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-33 Score=315.14 Aligned_cols=216 Identities=19% Similarity=0.328 Sum_probs=172.3
Q ss_pred ccEEEeeeEEEeCCcccc------------cCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEE
Q 001091 589 VAIDIEAGEYAWDAREEN------------FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI 655 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~------------~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~ 655 (1159)
..|+++|++..|.....+ .....+++++ ||++++||.++|+||+|||||||+++|+|+++|.+|+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I- 81 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV- 81 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE-
Confidence 358899998888653110 1133568999 99999999999999999999999999999999999999
Q ss_pred EECCEEEEEecCCCCCC-CcHHHHHhcCC---CCChHHH----HHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHH
Q 001091 656 KVHGKKAYVPQSSWIQT-GTIRENILFGK---DMRQSFY----EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1159)
Q Consensus 656 ~v~g~iayv~Q~pwi~~-gTIreNIlfG~---~~d~~~y----~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQ 727 (1159)
.++|.++|++|++++.+ .|++|||.++. .++.+.. +++++..+|.+ .+.....+|||||||
T Consensus 82 ~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~Gq~q 150 (264)
T PRK13546 82 DRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGE-----------FIYQPVKKYSSGMRA 150 (264)
T ss_pred EECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCCcccCCHHHHH
Confidence 99999999999998764 69999998642 2333322 23333333332 233456789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHH
Q 001091 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1159)
Q Consensus 728 RIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~e 805 (1159)
|++||||++++|+++||||||++||+.+.+.+.+ .+..+. .|+|+|++||+++.++. ||+|++|++|+|++.|++++
T Consensus 151 rv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~-~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~ 229 (264)
T PRK13546 151 KLGFSINITVNPDILVIDEALSVGDQTFAQKCLD-KIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDD 229 (264)
T ss_pred HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999877665 454443 58999999999999865 99999999999999999999
Q ss_pred HHhhcchHHHHHH
Q 001091 806 LIADQNSELVRQM 818 (1159)
Q Consensus 806 L~~~~~~~~~~l~ 818 (1159)
+.+ +...|.+..
T Consensus 230 ~~~-~~~~~~~~~ 241 (264)
T PRK13546 230 VLP-KYEAFLNDF 241 (264)
T ss_pred HHH-HhHHHHHHH
Confidence 987 444444433
No 238
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-34 Score=319.70 Aligned_cols=198 Identities=29% Similarity=0.441 Sum_probs=163.6
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|++++|+++ .++++| |+++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 6 ~l~~~~l~~~~~~~-------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~ 77 (272)
T PRK15056 6 GIVVNDVTVTWRNG-------HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI-SILGQPTRQALQK 77 (272)
T ss_pred eEEEEeEEEEecCC-------cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEhHHhhcc
Confidence 58999999999632 468999 99999999999999999999999999999999999999 8876
Q ss_pred -EEEEEecCCCC---CCCcHHHHHhcCCC-----------CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHH
Q 001091 660 -KKAYVPQSSWI---QTGTIRENILFGKD-----------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1159)
Q Consensus 660 -~iayv~Q~pwi---~~gTIreNIlfG~~-----------~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGG 724 (1159)
.++|++|+|.+ +..+++||+.++.. .++++.+++++..+|.+..+ ....+||||
T Consensus 78 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG 146 (272)
T PRK15056 78 NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-----------RQIGELSGG 146 (272)
T ss_pred ceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHH
Confidence 48999999864 45689999976421 11234455666666654322 234579999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccc-cccCEEEEEeCCeEEEecC
Q 001091 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGK 802 (1159)
Q Consensus 725 QKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt 802 (1159)
||||++||||++++|+++||||||++||+.+.+.+. +.+..+. +|+|+|++||+++.+ ..||+++++ +|++++.|+
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~-~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~ 224 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARII-SLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGP 224 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecC
Confidence 999999999999999999999999999999987765 4566554 489999999999886 459999777 899999999
Q ss_pred hHHHHh
Q 001091 803 YEDLIA 808 (1159)
Q Consensus 803 ~~eL~~ 808 (1159)
++++.+
T Consensus 225 ~~~~~~ 230 (272)
T PRK15056 225 TETTFT 230 (272)
T ss_pred HHhccC
Confidence 998764
No 239
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=8.1e-34 Score=325.74 Aligned_cols=214 Identities=20% Similarity=0.329 Sum_probs=170.1
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCC---CCcEEEECC-----
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVHG----- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~---~G~i~~v~g----- 659 (1159)
..++++|++++|.... .....++| ||+|++||.++|+|+||||||||+++|+|+++|. +|+| .++|
T Consensus 11 ~~L~i~~l~~~~~~~~----~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I-~~~G~~i~~ 85 (330)
T PRK09473 11 ALLDVKDLRVTFSTPD----GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSA-TFNGREILN 85 (330)
T ss_pred ceEEEeCeEEEEecCC----CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEE-EECCEECCc
Confidence 4689999999996430 12468999 9999999999999999999999999999999985 9998 7765
Q ss_pred ------------EEEEEecCCC--C-CCCcHHHHHhcCC----CCCh-H---HHHHHHHHhccchHHHhccCCCCccccC
Q 001091 660 ------------KKAYVPQSSW--I-QTGTIRENILFGK----DMRQ-S---FYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1159)
Q Consensus 660 ------------~iayv~Q~pw--i-~~gTIreNIlfG~----~~d~-~---~y~~vl~ac~L~~dl~~lp~Gd~T~IGe 716 (1159)
.++||+|+|. + ...|+.+||.... ..+. + +..+.++..+| +++. +.++.
T Consensus 86 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~-~~~~~ 157 (330)
T PRK09473 86 LPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEAR-KRMKM 157 (330)
T ss_pred CCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChH-HHhcC
Confidence 4899999983 3 4468888885421 2222 2 22333343333 3332 23566
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCccccc-ccCEEEEEe
Q 001091 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMK 793 (1159)
Q Consensus 717 ~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~-~aD~Iivl~ 793 (1159)
....|||||||||+||||++.+|+++|+||||||||+.+.+.+.+ .+..+.+ |.|+|+|||+++.+. .||+|+||+
T Consensus 158 ~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~ 236 (330)
T PRK09473 158 YPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMT-LLNELKREFNTAIIMITHDLGVVAGICDKVLVMY 236 (330)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 788999999999999999999999999999999999999887765 5655543 789999999999986 599999999
Q ss_pred CCeEEEecChHHHHhhcchHHHH
Q 001091 794 DGKIEQSGKYEDLIADQNSELVR 816 (1159)
Q Consensus 794 ~G~I~e~Gt~~eL~~~~~~~~~~ 816 (1159)
+|+|+|.|+.+++.++....|.+
T Consensus 237 ~G~ive~g~~~~i~~~p~~pyt~ 259 (330)
T PRK09473 237 AGRTMEYGNARDVFYQPSHPYSI 259 (330)
T ss_pred CCEEEEECCHHHHHhCCCCHHHH
Confidence 99999999999998744455554
No 240
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=7e-34 Score=318.37 Aligned_cols=212 Identities=25% Similarity=0.344 Sum_probs=167.7
Q ss_pred cEEEeeeEEEeCCccc-ccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 590 AIDIEAGEYAWDAREE-NFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~-~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
.|+++|+++.|+.... ..+.+.++++| ||++++||+++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i-~~~g~~~~~~~~ 81 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNV-SWRGEPLAKLNR 81 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEeccccCh
Confidence 3789999999973100 00012568999 99999999999999999999999999999999999998 7765
Q ss_pred --------EEEEEecCCC--C-CCCcHHHHHhcCC----CCCh----HHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 --------KKAYVPQSSW--I-QTGTIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 --------~iayv~Q~pw--i-~~gTIreNIlfG~----~~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.++|++|++. + .+.|++||+.+.. ..+. ++.++.++.+++..+ ..+.....
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~ 151 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDS----------VLDKRPPQ 151 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChh----------HhhCCCcc
Confidence 3899999983 3 4589999996531 1121 234455554444321 23456778
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccccc-cCEEEEEeCCeE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~~-aD~Iivl~~G~I 797 (1159)
||||||||++||||+.++|+++||||||++||+++.+.+. +++..+.+ ++|+|++||+++.++. ||+|++|++|++
T Consensus 152 LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~-~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i 230 (268)
T PRK10419 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVI-RLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQI 230 (268)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHH-HHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999977654 56666543 7999999999999874 999999999999
Q ss_pred EEecChHHHHhhcchHH
Q 001091 798 EQSGKYEDLIADQNSEL 814 (1159)
Q Consensus 798 ~e~Gt~~eL~~~~~~~~ 814 (1159)
++.|+.+|+.. ....+
T Consensus 231 ~~~g~~~~~~~-~~~~~ 246 (268)
T PRK10419 231 VETQPVGDKLT-FSSPA 246 (268)
T ss_pred eeeCChhhccC-CCCHH
Confidence 99999999876 44433
No 241
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-34 Score=326.73 Aligned_cols=213 Identities=18% Similarity=0.291 Sum_probs=170.0
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc----CCCCcEEEECC-----
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP----RISGAAIKVHG----- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~----~~~G~i~~v~g----- 659 (1159)
.++++|++++|+... ....+++| ||+|++||.++|+|+||||||||+++|+|+.+ +++|+| .++|
T Consensus 3 ~L~v~~l~~~y~~~~----~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i-~~~g~~i~~ 77 (330)
T PRK15093 3 LLDIRNLTIEFKTSD----GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRM-RFDDIDLLR 77 (330)
T ss_pred eEEEeeeEEEEeCCC----CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEE-EECCEECCc
Confidence 478999999996430 12468999 99999999999999999999999999999986 588998 7765
Q ss_pred ------------EEEEEecCCCC---CCCcHHHHHhcCC---C-----C-----ChHHHHHHHHHhccchHHHhccCCCC
Q 001091 660 ------------KKAYVPQSSWI---QTGTIRENILFGK---D-----M-----RQSFYEEVLEGCALNQDIEMWADGDL 711 (1159)
Q Consensus 660 ------------~iayv~Q~pwi---~~gTIreNIlfG~---~-----~-----d~~~y~~vl~ac~L~~dl~~lp~Gd~ 711 (1159)
.++||+|+|.. ...||.+||.+.. . . .+++..+.++..+|.+..+
T Consensus 78 ~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~------- 150 (330)
T PRK15093 78 LSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD------- 150 (330)
T ss_pred CCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH-------
Confidence 38999999963 3569999997421 0 0 1234556677777753211
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccccc-cCE
Q 001091 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADL 788 (1159)
Q Consensus 712 T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~~-aD~ 788 (1159)
........|||||||||+||||++.+|+++|+|||||+||+.+.+++.+ .+..+.+ |.|+|+|||+++.+.. ||+
T Consensus 151 -~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l~~~~g~tii~itHdl~~v~~~~dr 228 (330)
T PRK15093 151 -AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFR-LLTRLNQNNNTTILLISHDLQMLSQWADK 228 (330)
T ss_pred -HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhCCE
Confidence 1123456999999999999999999999999999999999999887765 5655543 7999999999999855 999
Q ss_pred EEEEeCCeEEEecChHHHHhhcchHHHH
Q 001091 789 VLVMKDGKIEQSGKYEDLIADQNSELVR 816 (1159)
Q Consensus 789 Iivl~~G~I~e~Gt~~eL~~~~~~~~~~ 816 (1159)
|++|++|+|++.|+.+++.++....|.+
T Consensus 229 i~vm~~G~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 229 INVLYCGQTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred EEEEECCEEEEECCHHHHHhCCCCHHHH
Confidence 9999999999999999998744445544
No 242
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-34 Score=316.17 Aligned_cols=202 Identities=22% Similarity=0.362 Sum_probs=167.9
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCC-----CCcEEEECC----
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-----SGAAIKVHG---- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~-----~G~i~~v~g---- 659 (1159)
.++++|+++.|+. .++++| ||++++||.++|+|++|||||||+++|.|+++|. +|+| .++|
T Consensus 7 ~l~~~nl~~~~~~--------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i-~~~g~~i~ 77 (261)
T PRK14258 7 AIKVNNLSFYYDT--------QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRV-EFFNQNIY 77 (261)
T ss_pred eEEEeeEEEEeCC--------eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceE-EECCEEhh
Confidence 5899999999963 358999 9999999999999999999999999999999985 7877 5543
Q ss_pred -----------EEEEEecCCCCCCCcHHHHHhcCCC---C-C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 -----------KKAYVPQSSWIQTGTIRENILFGKD---M-R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 -----------~iayv~Q~pwi~~gTIreNIlfG~~---~-d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.++|++|++.++..|++||+.++.. . + +++..++++..++.+.+.. ..+..+.+
T Consensus 78 ~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~ 150 (261)
T PRK14258 78 ERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALD 150 (261)
T ss_pred ccccchHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCccc
Confidence 3899999999999999999987521 1 1 1234556666666443332 24567789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccc-cCEEEEEeC---
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKD--- 794 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~--- 794 (1159)
||||||||++||||+.++|+++||||||++||+.+.+.+.+ .+..+. .++|+|+|||+++.++. ||+|++|++
T Consensus 151 LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~-~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~ 229 (261)
T PRK14258 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVES-LIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNEN 229 (261)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCC
Confidence 99999999999999999999999999999999999876654 555543 48999999999999864 999999999
Q ss_pred --CeEEEecChHHHHh
Q 001091 795 --GKIEQSGKYEDLIA 808 (1159)
Q Consensus 795 --G~I~e~Gt~~eL~~ 808 (1159)
|++++.|+.+++.+
T Consensus 230 ~~G~i~~~~~~~~~~~ 245 (261)
T PRK14258 230 RIGQLVEFGLTKKIFN 245 (261)
T ss_pred cCceEEEeCCHHHHHh
Confidence 99999999999876
No 243
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=5.3e-34 Score=311.63 Aligned_cols=199 Identities=28% Similarity=0.412 Sum_probs=157.7
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc---CCCCcEEEECC------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP---RISGAAIKVHG------ 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~---~~~G~i~~v~g------ 659 (1159)
.+.++|++|.++... ...++++| |+++++||.++|+||+|||||||+++|.|+++ |.+|+| .++|
T Consensus 3 ~~~~~~~~~~~~~~~----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i-~~~g~~~~~~ 77 (226)
T cd03234 3 VLPWWDVGLKAKNWN----KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQI-LFNGQPRKPD 77 (226)
T ss_pred cceeecceeeeecCc----cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEE-EECCEECChH
Confidence 357899999997540 13678999 99999999999999999999999999999999 899998 7776
Q ss_pred ----EEEEEecCCCCCCC-cHHHHHhcCCCCC-----hHHHH-HHHHHhccchHHHhccCCCCcccc-CCCCCCCHHHHH
Q 001091 660 ----KKAYVPQSSWIQTG-TIRENILFGKDMR-----QSFYE-EVLEGCALNQDIEMWADGDLSVVG-ERGINLSGGQKQ 727 (1159)
Q Consensus 660 ----~iayv~Q~pwi~~g-TIreNIlfG~~~d-----~~~y~-~vl~ac~L~~dl~~lp~Gd~T~IG-e~G~~LSGGQKQ 727 (1159)
.++|++|++.++++ |++|||.|+..+. .+... +..+ . ..++....+.+. ....+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~-----~--~~l~~~~l~~~~~~~~~~LS~G~~q 150 (226)
T cd03234 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVE-----D--VLLRDLALTRIGGNLVKGISGGERR 150 (226)
T ss_pred HhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHH-----H--HHHHhhcchhhhcccccCcCHHHHH
Confidence 48999999999887 9999998753211 11110 0000 0 023333334443 455799999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCc-cc-ccccCEEEEEeCCeEEEec
Q 001091 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQL-EF-LDAADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 728 RIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l-~~-l~~aD~Iivl~~G~I~e~G 801 (1159)
|++||||++++|+++||||||++||+.+.+++.+ .+..+. +++|+|++||+. +. ...||+|++|++|++++.|
T Consensus 151 rl~laral~~~p~illlDEP~~gLD~~~~~~~~~-~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 151 RVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVS-TLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999877655 565543 478999999998 34 5679999999999999876
No 244
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=6.2e-34 Score=309.81 Aligned_cols=190 Identities=31% Similarity=0.447 Sum_probs=159.6
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|+++.|++.. .....+++ |+++++|+.++|+|++|||||||+++|.|.++|++|+| .++|
T Consensus 2 l~~~~l~~~~~~~~----~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 76 (220)
T TIGR02982 2 ISIRNLNHYYGHGS----LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSL-KVLGQELYGASEKE 76 (220)
T ss_pred EEEEEEEEEccCCC----cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEEhHhcCHhH
Confidence 78999999996420 12568999 99999999999999999999999999999999999998 7765
Q ss_pred ------EEEEEecCCCCCC-CcHHHHHhcCCC----CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHH
Q 001091 660 ------KKAYVPQSSWIQT-GTIRENILFGKD----MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1159)
Q Consensus 660 ------~iayv~Q~pwi~~-gTIreNIlfG~~----~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGG 724 (1159)
.++|++|+|-++. .|+.||+.++.. .+ +++.+++++.++|.++++..| .+||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G 145 (220)
T TIGR02982 77 LVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGG 145 (220)
T ss_pred HHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHH
Confidence 3899999998887 799999987642 22 224566667777765555443 589999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccccCEEEEEeCCeE
Q 001091 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1159)
Q Consensus 725 QKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~aD~Iivl~~G~I 797 (1159)
||||++||||++++|+++|||||+++||+.+.+.+.+ .++.+. +++|+|++||+++....||+|++|++|++
T Consensus 146 ~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 146 QKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVE-LMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 9999999999999999999999999999999877654 566554 37999999999998778999999999986
No 245
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=8.6e-34 Score=302.45 Aligned_cols=175 Identities=26% Similarity=0.460 Sum_probs=149.0
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCc--cCCCCcEEEECC-------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVHG------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~--~~~~G~i~~v~g------- 659 (1159)
.++++|+++.|+... .....+++++ |+++++||.++|+||+|||||||+++|.|++ +|.+|+| .++|
T Consensus 3 ~l~~~~ls~~~~~~~--~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i-~~~g~~~~~~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSP--SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEV-LINGRPLDKRS 79 (194)
T ss_pred EEEEEeeEEEEecCC--CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEE-EECCEeCchHh
Confidence 489999999997420 0012578999 9999999999999999999999999999999 9999998 7765
Q ss_pred ---EEEEEecCCCCCC-CcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 001091 660 ---KKAYVPQSSWIQT-GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1159)
Q Consensus 660 ---~iayv~Q~pwi~~-gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAl 735 (1159)
.++|++|++.++. .|++|||.++.... .||||||||++||||+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~---------------------------------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAKLR---------------------------------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHHhc---------------------------------cCCHHHHHHHHHHHHH
Confidence 4899999998876 59999997642110 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcc-cc-cccCEEEEEeCCeEEEec
Q 001091 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLE-FL-DAADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 736 y~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~-~l-~~aD~Iivl~~G~I~e~G 801 (1159)
.++|+++||||||++||+++.+.+. +.++.+. +++|+|++||+++ .+ ..||+|++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVM-SLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999999987665 4566554 4899999999997 45 459999999999998764
No 246
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-33 Score=316.44 Aligned_cols=197 Identities=25% Similarity=0.374 Sum_probs=164.7
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCC--------CCcEEEECC--
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI--------SGAAIKVHG-- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~--------~G~i~~v~g-- 659 (1159)
++++|++++|+. .+++++ ||+|++|+.++|+||+|||||||+++|.|+++|. +|+| .++|
T Consensus 2 l~~~nl~~~~~~--------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i-~~~g~~ 72 (272)
T PRK13547 2 LTADHLHVARRH--------RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDV-TLNGEP 72 (272)
T ss_pred eEEEEEEEEECC--------EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEE-EECCEE
Confidence 688999999953 468999 9999999999999999999999999999999998 8998 8876
Q ss_pred -----------EEEEEecCCC-CCCCcHHHHHhcCCC-C----------ChHHHHHHHHHhccchHHHhccCCCCccccC
Q 001091 660 -----------KKAYVPQSSW-IQTGTIRENILFGKD-M----------RQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1159)
Q Consensus 660 -----------~iayv~Q~pw-i~~gTIreNIlfG~~-~----------d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe 716 (1159)
.++|++|++- +++.|++|||.++.. . ++++.+++++..+| .+..+.
T Consensus 73 ~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~ 141 (272)
T PRK13547 73 LAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGA-----------TALVGR 141 (272)
T ss_pred cccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCc-----------HhhhcC
Confidence 2699999975 578999999988631 1 11233444444444 334556
Q ss_pred CCCCCCHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCccccc-
Q 001091 717 RGINLSGGQKQRIQLARAVY---------SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD- 784 (1159)
Q Consensus 717 ~G~~LSGGQKQRIaLARAly---------~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~- 784 (1159)
...+||||||||++||||++ .+|+++||||||++||+.+.+.+.+ .+..+.+ ++|+|++||+++.+.
T Consensus 142 ~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tviiisH~~~~~~~ 220 (272)
T PRK13547 142 DVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLD-TVRRLARDWNLGVLAIVHDPNLAAR 220 (272)
T ss_pred CcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHH
Confidence 77899999999999999999 5999999999999999999877654 5666543 799999999999985
Q ss_pred ccCEEEEEeCCeEEEecChHHHHh
Q 001091 785 AADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 785 ~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
.||+|++|++|+|++.|+.+++.+
T Consensus 221 ~~d~i~~l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 221 HADRIAMLADGAIVAHGAPADVLT 244 (272)
T ss_pred hCCEEEEEECCeEEEecCHHHHcC
Confidence 599999999999999999998865
No 247
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=6.4e-34 Score=286.42 Aligned_cols=191 Identities=29% Similarity=0.411 Sum_probs=167.7
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+|+|++..|+.. .+.|+| ||+|++||++-++||||+||||||++|.++..|++|+| .++|
T Consensus 2 I~f~~V~k~Y~~g-------~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i-~~~~~dl~~l~~~~ 73 (223)
T COG2884 2 IRFENVSKAYPGG-------REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI-LVNGHDLSRLKGRE 73 (223)
T ss_pred eeehhhhhhcCCC-------chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceE-EECCeecccccccc
Confidence 7899999999864 679999 99999999999999999999999999999999999999 7776
Q ss_pred ------EEEEEecCCCC-CCCcHHHHHhcCCCC---C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHH
Q 001091 660 ------KKAYVPQSSWI-QTGTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1159)
Q Consensus 660 ------~iayv~Q~pwi-~~gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQ 725 (1159)
+||+|.||--| .+-|+.||+.|.... . +++..++++..+|.+-...||. .||||+
T Consensus 74 iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGE 142 (223)
T COG2884 74 IPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGE 142 (223)
T ss_pred cchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchH
Confidence 59999999765 678999999986421 1 3566788888999888888874 799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeEEEec
Q 001091 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 726 KQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~G 801 (1159)
+||++||||+..+|+++|-||||-+||+.++..|++ .+.++- .|.||+++||+.+.+.. --+++.+++|+++...
T Consensus 143 QQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~-lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMR-LFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHH-HHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 999999999999999999999999999999999876 444443 59999999999999876 4689999999998654
No 248
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.9e-34 Score=296.89 Aligned_cols=157 Identities=32% Similarity=0.556 Sum_probs=141.0
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++++|++ .+.+++ |+++++||.++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (173)
T cd03230 1 IEVRNLSKRYGK--------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI-KVLGKDIKKEPEEV 71 (173)
T ss_pred CEEEEEEEEECC--------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEEcccchHhh
Confidence 468899999963 358999 99999999999999999999999999999999999998 7765
Q ss_pred --EEEEEecCCCCCCC-cHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 001091 660 --KKAYVPQSSWIQTG-TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1159)
Q Consensus 660 --~iayv~Q~pwi~~g-TIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly 736 (1159)
.++|++|+|.++.+ |++||+. ||||||||++||||++
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~ 111 (173)
T cd03230 72 KRRIGYLPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALL 111 (173)
T ss_pred hccEEEEecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHH
Confidence 37999999998876 9999984 9999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeCCeE
Q 001091 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1159)
Q Consensus 737 ~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I 797 (1159)
++|+++||||||++||+++.+.+.+ .++.+. +|+|+|++||+.+.++ .||+|++|++|++
T Consensus 112 ~~p~illlDEPt~~LD~~~~~~l~~-~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 112 HDPELLILDEPTSGLDPESRREFWE-LLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999887655 565554 4789999999999887 5999999999974
No 249
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=8.8e-34 Score=329.21 Aligned_cols=191 Identities=27% Similarity=0.423 Sum_probs=159.3
Q ss_pred eeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------------
Q 001091 595 AGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------- 659 (1159)
Q Consensus 595 ~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------------- 659 (1159)
|++++|++. .+ + ||++++||+++|+||+|||||||+++|.|+++|++|+| .++|
T Consensus 4 ~l~~~~~~~---------~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I-~~~g~~i~~~~~~~~~~~ 72 (354)
T TIGR02142 4 RFSKRLGDF---------SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEI-VLNGRTLFDSRKGIFLPP 72 (354)
T ss_pred EEEEEECCE---------EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECccCccccccch
Confidence 678888532 24 8 99999999999999999999999999999999999998 6654
Q ss_pred ---EEEEEecCCCCCC-CcHHHHHhcCCCC-C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHH
Q 001091 660 ---KKAYVPQSSWIQT-GTIRENILFGKDM-R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1159)
Q Consensus 660 ---~iayv~Q~pwi~~-gTIreNIlfG~~~-d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIa 730 (1159)
.++|++|++.+|. .|++|||.|+... + +++.+++++..+|.+. ......+||||||||++
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGqkqRva 141 (354)
T TIGR02142 73 EKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHL-----------LGRLPGRLSGGEKQRVA 141 (354)
T ss_pred hhCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHH
Confidence 3799999999986 5999999987432 1 2235556665555433 33445789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCccccc-ccCEEEEEeCCeEEEecChHHHH
Q 001091 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLI 807 (1159)
Q Consensus 731 LARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~ 807 (1159)
||||+..+|+++||||||++||+.+.+.+.+ .++.+.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 142 lAraL~~~p~lllLDEPts~LD~~~~~~l~~-~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 142 IGRALLSSPRLLLMDEPLAALDDPRKYEILP-YLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred HHHHHHcCCCEEEEcCCCcCCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 9999999999999999999999999877654 4655543 799999999999875 49999999999999999999988
Q ss_pred h
Q 001091 808 A 808 (1159)
Q Consensus 808 ~ 808 (1159)
.
T Consensus 221 ~ 221 (354)
T TIGR02142 221 A 221 (354)
T ss_pred c
Confidence 6
No 250
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-33 Score=305.65 Aligned_cols=183 Identities=29% Similarity=0.426 Sum_probs=152.2
Q ss_pred eeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------------
Q 001091 595 AGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------- 659 (1159)
Q Consensus 595 ~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------------- 659 (1159)
|++++|++. .+ | ||++++ |+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 5 ~l~~~~~~~--------~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~~~~~ 72 (214)
T cd03297 5 DIEKRLPDF--------TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTI-VLNGTVLFDSRKKINLPP 72 (214)
T ss_pred eeeEecCCe--------ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEecccccchhhhhh
Confidence 788888643 23 8 999999 9999999999999999999999999999998 7655
Q ss_pred ---EEEEEecCCCCCC-CcHHHHHhcCCCC-----ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHH
Q 001091 660 ---KKAYVPQSSWIQT-GTIRENILFGKDM-----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1159)
Q Consensus 660 ---~iayv~Q~pwi~~-gTIreNIlfG~~~-----d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIa 730 (1159)
.++|++|++.++. .|++|||.++... ++++.++.++..++.+ .......+||||||||++
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~ 141 (214)
T cd03297 73 QQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDH-----------LLNRYPAQLSGGEKQRVA 141 (214)
T ss_pred HhhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHh-----------HhhcCcccCCHHHHHHHH
Confidence 3899999999985 6999999876432 2234555566555543 234566799999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-C-CcEEEEEccCccccc-ccCEEEEEeCCeEEEec
Q 001091 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 731 LARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~-~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~G 801 (1159)
||||++++|+++||||||++||+.+.+.+.+ .+..+. + ++|+|++||+.+.+. .||+|++|++|++++.|
T Consensus 142 la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 142 LARALAAQPELLLLDEPFSALDRALRLQLLP-ELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999776654 565554 3 799999999999885 59999999999998876
No 251
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.3e-33 Score=316.54 Aligned_cols=199 Identities=30% Similarity=0.455 Sum_probs=171.5
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|++..|..+ ..+|+| ||++++|++++++||+|||||||+++|+|.+.|++|+| .++|
T Consensus 4 ~i~~~~l~k~~~~~-------~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i-~i~G~~~~~~~~~ 75 (293)
T COG1131 4 VIEVRNLTKKYGGD-------KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI-LVLGYDVVKEPAK 75 (293)
T ss_pred eeeecceEEEeCCC-------CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EEcCEeCccCHHH
Confidence 47889999999732 578999 99999999999999999999999999999999999999 8887
Q ss_pred ---EEEEEecCCCC-CCCcHHHHHhcCC-----C--CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHH
Q 001091 660 ---KKAYVPQSSWI-QTGTIRENILFGK-----D--MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1159)
Q Consensus 660 ---~iayv~Q~pwi-~~gTIreNIlfG~-----~--~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQR 728 (1159)
++||+||+|-+ .+-|++||+.|-. + .++++.+++++.-+|.++- ..+-..||||||||
T Consensus 76 ~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqr 144 (293)
T COG1131 76 VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQR 144 (293)
T ss_pred HHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHH
Confidence 48999999975 4679999998732 2 3456788888888876521 34567899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC-C-cEEEEEccCcccccc-cCEEEEEeCCeEEEecChHH
Q 001091 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-Q-KTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1159)
Q Consensus 729 IaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~-~-kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~e 805 (1159)
++||+|+..+|++|+|||||++||+.....+. +.++.+.+ + +||+++||.++.+.. ||+|++|++|+++..|+.++
T Consensus 145 l~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~-~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~ 223 (293)
T COG1131 145 LSIALALLHDPELLILDEPTSGLDPESRREIW-ELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEE 223 (293)
T ss_pred HHHHHHHhcCCCEEEECCCCcCCCHHHHHHHH-HHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999977654 56766654 5 799999999999876 99999999999999999998
Q ss_pred HHh
Q 001091 806 LIA 808 (1159)
Q Consensus 806 L~~ 808 (1159)
+..
T Consensus 224 l~~ 226 (293)
T COG1131 224 LKE 226 (293)
T ss_pred HHH
Confidence 765
No 252
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.4e-33 Score=309.08 Aligned_cols=186 Identities=27% Similarity=0.378 Sum_probs=153.4
Q ss_pred cccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC----CCCcEEEECC-----------EEEEEecCCC-CCC--C
Q 001091 613 KLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR----ISGAAIKVHG-----------KKAYVPQSSW-IQT--G 673 (1159)
Q Consensus 613 ~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~----~~G~i~~v~g-----------~iayv~Q~pw-i~~--g 673 (1159)
+++| |+++++|++++|+||+|||||||+++|.|+++| .+|+| .++| .++|++|+|. .++ .
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i-~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEI-LLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEE-EECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 3678 999999999999999999999999999999999 89998 7765 5899999995 333 6
Q ss_pred cHHHHHhcCCC-----C--ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q 001091 674 TIRENILFGKD-----M--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDD 746 (1159)
Q Consensus 674 TIreNIlfG~~-----~--d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDD 746 (1159)
|++||+.++.. . ++++.++.++.+++.+ + .+.......+||||||||++||||++++|+++||||
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999865321 1 1234556666666541 1 123456678999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCccccc-ccCEEEEEeCCeEEEecChHHHHh
Q 001091 747 PFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 747 p~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
||++||+.+.+.+. +.+..+.+ ++|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 152 Pt~~LD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 215 (230)
T TIGR02770 152 PTTDLDVVNQARVL-KLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFY 215 (230)
T ss_pred CccccCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999977664 45665543 789999999999985 599999999999999999999976
No 253
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-33 Score=299.89 Aligned_cols=173 Identities=25% Similarity=0.385 Sum_probs=148.3
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCc--cCCCCcEEEECC-------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVHG------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~--~~~~G~i~~v~g------- 659 (1159)
.++++|+++.|++.. ...+.+++ |+++++||+++|+||+|||||||+++|.|.+ +|.+|++ .++|
T Consensus 3 ~l~~~~l~~~~~~~~----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i-~~~g~~~~~~~ 77 (192)
T cd03232 3 VLTWKNLNYTVPVKG----GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEI-LINGRPLDKNF 77 (192)
T ss_pred EEEEeeeEEEecCCC----CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEE-EECCEehHHHh
Confidence 488999999997520 12468999 9999999999999999999999999999986 4899998 7776
Q ss_pred --EEEEEecCCCCCC-CcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 001091 660 --KKAYVPQSSWIQT-GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1159)
Q Consensus 660 --~iayv~Q~pwi~~-gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly 736 (1159)
.++|++|+|-++. .|++||+.++.. ++ +||||||||++||||+.
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~---------~~------------------------~LSgGe~qrv~la~al~ 124 (192)
T cd03232 78 QRSTGYVEQQDVHSPNLTVREALRFSAL---------LR------------------------GLSVEQRKRLTIGVELA 124 (192)
T ss_pred hhceEEecccCccccCCcHHHHHHHHHH---------Hh------------------------cCCHHHhHHHHHHHHHh
Confidence 4899999998776 599999986421 00 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccc--ccccCEEEEEeC-CeEEEec
Q 001091 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEF--LDAADLVLVMKD-GKIEQSG 801 (1159)
Q Consensus 737 ~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~--l~~aD~Iivl~~-G~I~e~G 801 (1159)
++|+++||||||++||+.+.+.+.+ .+..+. +++|+|++||+++. ...||+|++|++ |++++.|
T Consensus 125 ~~p~vlllDEP~~~LD~~~~~~l~~-~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 125 AKPSILFLDEPTSGLDSQAAYNIVR-FLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cCCcEEEEeCCCcCCCHHHHHHHHH-HHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999887765 465543 48999999999984 467999999999 9999875
No 254
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-33 Score=293.85 Aligned_cols=157 Identities=40% Similarity=0.657 Sum_probs=142.8
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|+++.|++. ..+.+++ |+++++|+.++|+||+|||||||+++|.|+++|.+|++ .++|
T Consensus 1 l~~~~l~~~~~~~------~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 73 (171)
T cd03228 1 IEFKNVSFSYPGR------PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI-LIDGVDLRDLDLES 73 (171)
T ss_pred CEEEEEEEEcCCC------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE-EECCEEhhhcCHHH
Confidence 4689999999743 2368999 99999999999999999999999999999999999998 7776
Q ss_pred ---EEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 001091 660 ---KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1159)
Q Consensus 660 ---~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly 736 (1159)
.++|++|+|.+++.|++||+ ||||||||++||||+.
T Consensus 74 ~~~~i~~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~ 112 (171)
T cd03228 74 LRKNIAYVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALL 112 (171)
T ss_pred HHhhEEEEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHh
Confidence 37999999999999999998 9999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCe
Q 001091 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1159)
Q Consensus 737 ~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~ 796 (1159)
++|+++||||||++||+.+.+++. +.+..+.+++|+|++||+.+.++.||++++|++|+
T Consensus 113 ~~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 113 RDPPILILDEATSALDPETEALIL-EALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHH-HHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999977664 45666666899999999999998899999999985
No 255
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=4.5e-33 Score=309.54 Aligned_cols=202 Identities=22% Similarity=0.325 Sum_probs=161.5
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|+++.|++ .++++| ||++++|++++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 73 (253)
T TIGR02323 3 LLQVSGLSKSYGG--------GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTA-TYIMRSGAELELY 73 (253)
T ss_pred eEEEeeeEEEeCC--------ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EEecccccccccc
Confidence 4899999999964 357999 99999999999999999999999999999999999998 6653
Q ss_pred -------------EEEEEecCCC--C-CCCcHHHHHhcC-----CCCChHHHHHHHHHhccchHHHhccCCCCccccCCC
Q 001091 660 -------------KKAYVPQSSW--I-QTGTIRENILFG-----KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1159)
Q Consensus 660 -------------~iayv~Q~pw--i-~~gTIreNIlfG-----~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G 718 (1159)
.++|++|+|- + +..|+.|||.++ .....+..+++ .+-++.+.-+ .+......
T Consensus 74 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~l~~l~l~-~~~~~~~~ 146 (253)
T TIGR02323 74 QLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAA------HDWLEEVEID-PTRIDDLP 146 (253)
T ss_pred cCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHH------HHHHHHcCCC-hhhhhcCc
Confidence 2799999984 2 456899998642 11111111111 2223343221 23456678
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEeCC
Q 001091 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDG 795 (1159)
Q Consensus 719 ~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G 795 (1159)
.+||||||||++||||++++|+++||||||++||+.+.+.+.+ ++..+. .++|+|+|||+++.+. .||++++|++|
T Consensus 147 ~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G 225 (253)
T TIGR02323 147 RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD-LLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQG 225 (253)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 8999999999999999999999999999999999999876654 565543 3799999999999987 49999999999
Q ss_pred eEEEecChHHHHh
Q 001091 796 KIEQSGKYEDLIA 808 (1159)
Q Consensus 796 ~I~e~Gt~~eL~~ 808 (1159)
++++.|+.+++..
T Consensus 226 ~i~~~~~~~~~~~ 238 (253)
T TIGR02323 226 RVVESGLTDQVLD 238 (253)
T ss_pred EEEEECCHHHHhc
Confidence 9999999998875
No 256
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.8e-34 Score=304.44 Aligned_cols=214 Identities=29% Similarity=0.420 Sum_probs=172.9
Q ss_pred cEEEeeeEEEeCCcccc---------cC-------CCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCC
Q 001091 590 AIDIEAGEYAWDAREEN---------FK-------KPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~---------~~-------~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G 652 (1159)
.|+++|+..-+..+... .+ ....-++| ||+++.||+..|.|-||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 57888887766543211 00 11234778 999999999999999999999999999999999999
Q ss_pred cEEEECC-----------------EEEEEecCC-CCCCCcHHHHHhcCCCC----ChH---HHHHHHHHhccchHHHhcc
Q 001091 653 AAIKVHG-----------------KKAYVPQSS-WIQTGTIRENILFGKDM----RQS---FYEEVLEGCALNQDIEMWA 707 (1159)
Q Consensus 653 ~i~~v~g-----------------~iayv~Q~p-wi~~gTIreNIlfG~~~----d~~---~y~~vl~ac~L~~dl~~lp 707 (1159)
+| .++| +++.|.|+- -+++-||-||..||.+. .+| +-.++++..+|+..=...|
T Consensus 84 ~i-lv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp 162 (386)
T COG4175 84 EI-LVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP 162 (386)
T ss_pred eE-EECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc
Confidence 99 8987 489999995 55789999999999764 234 4455666677766555555
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhh-hcCCcEEEEEccCccc-ccc
Q 001091 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG-LLSQKTVLYTTHQLEF-LDA 785 (1159)
Q Consensus 708 ~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g-~l~~kTvIlVTH~l~~-l~~ 785 (1159)
..||||+||||.||||+..||||+|+|||||||||--...+=++.+.- ..-+||+|+|||+++. ++-
T Consensus 163 -----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlri 231 (386)
T COG4175 163 -----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRI 231 (386)
T ss_pred -----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhc
Confidence 479999999999999999999999999999999999877765554421 1127999999999986 788
Q ss_pred cCEEEEEeCCeEEEecChHHHHhhcchHHH
Q 001091 786 ADLVLVMKDGKIEQSGKYEDLIADQNSELV 815 (1159)
Q Consensus 786 aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~ 815 (1159)
.|+|-.|+||+|++.||++|++.++..+|-
T Consensus 232 G~rIaimkdG~ivQ~Gtp~eIl~~PAndYV 261 (386)
T COG4175 232 GDRIAIMKDGEIVQVGTPEEILLNPANDYV 261 (386)
T ss_pred cceEEEecCCeEEEeCCHHHHHcCccHHHH
Confidence 999999999999999999999985555553
No 257
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-33 Score=300.32 Aligned_cols=179 Identities=24% Similarity=0.348 Sum_probs=149.4
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc---CCCCcEEEECC------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP---RISGAAIKVHG------ 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~---~~~G~i~~v~g------ 659 (1159)
.+.++|++|.|+... ...+++++ |+++++||+++|+||+|||||||+++|.|.++ |.+|+| .++|
T Consensus 3 ~~~~~~~~~~~~~~~----~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i-~i~g~~~~~~ 77 (202)
T cd03233 3 TLSWRNISFTTGKGR----SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDI-HYNGIPYKEF 77 (202)
T ss_pred eEEEEccEEEeccCC----CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEE-EECCEECccc
Confidence 478999999998641 24578999 99999999999999999999999999999999 899998 7766
Q ss_pred ------EEEEEecCCCCCC-CcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHH
Q 001091 660 ------KKAYVPQSSWIQT-GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1159)
Q Consensus 660 ------~iayv~Q~pwi~~-gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLA 732 (1159)
.++|++|++.++. .|++|||.++.... ..+....||||||||++||
T Consensus 78 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------------~~~~~~~LS~Ge~qrl~la 130 (202)
T cd03233 78 AEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK---------------------------GNEFVRGISGGERKRVSIA 130 (202)
T ss_pred hhhhcceEEEEecccccCCCCcHHHHHhhhhhhc---------------------------cccchhhCCHHHHHHHHHH
Confidence 3899999998876 59999998763211 2245568999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccC-cccc-cccCEEEEEeCCeEEEec
Q 001091 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQ-LEFL-DAADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 733 RAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~-l~~l-~~aD~Iivl~~G~I~e~G 801 (1159)
||++++|+++||||||++||+++.+.+.+ .++.+.+ +.|+|++||+ .+.+ ..||+|++|++|++++.|
T Consensus 131 ral~~~p~llllDEPt~~LD~~~~~~~~~-~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 131 EALVSRASVLCWDNSTRGLDSSTALEILK-CIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHhhCCCEEEEcCCCccCCHHHHHHHHH-HHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999877654 6666543 5677777665 4555 569999999999998765
No 258
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=6.2e-30 Score=293.74 Aligned_cols=447 Identities=18% Similarity=0.201 Sum_probs=295.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------CCCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 001091 332 SLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIK------FAGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFL 404 (1159)
Q Consensus 332 ~l~~~~~~~~~~r~~~riR~~L~~~iy~K~L~ls------~~~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~i 404 (1159)
++......|...-+..|.|..+..-+|++=++-. +.+...-.-=.+++.|++++..... ....+...|+.++.
T Consensus 136 s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~ 215 (659)
T KOG0060|consen 136 SLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVY 215 (659)
T ss_pred HHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeeh
Confidence 3344445566778899999999999888876532 1111111123578889999877554 34455667777888
Q ss_pred HHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHH
Q 001091 405 ALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEA-KDARIKATSETLKSMRVLKLLSWEQEFLKKLLRL 483 (1159)
Q Consensus 405 a~~lL~~~lg~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~-~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~ 483 (1159)
-.+.++...||+.-...++-+++-..+|..+.+-+.+...+..+. -|-|. .-+++..|-..|-+|+-+..-...++..
T Consensus 216 Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy-~h~rlr~NaE~iAFY~g~~~E~~~~~~~ 294 (659)
T KOG0060|consen 216 YTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRY-KHSRLRVNAEEIAFYRGGQVEHQRTDQR 294 (659)
T ss_pred hhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhh-heeeeeecchhhhhhccCchHHHHHHHH
Confidence 888888888833222222222333444444433333322222222 23333 3456777888899998765433333332
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH---HH---hcCCcCHHHHHHHH----HHHHHHHHHHHHH
Q 001091 484 REIERDSLKKYL----YTCSAIAFLFWASPTLVSVITFGVC---IL---LKTPLTSGAVLSAL----ATFRILQEPIYNL 549 (1159)
Q Consensus 484 R~~E~~~l~~~~----~~~~~~~~~~~~~~~lv~~~~f~~~---~~---~~~~Lt~~~vft~l----~l~~~l~~pl~~l 549 (1159)
-+.-.+.++... .+..+..++-+ +..++.+.+. ++ ..+.++++..+..+ ..+..+...+..+
T Consensus 295 f~~Lv~~l~~l~~~r~~l~f~~n~~~Y----lg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l 370 (659)
T KOG0060|consen 295 FRNLVQHLRELMSFRFWLGFIDNIFDY----LGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRL 370 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 222222222221 11111111111 1111111110 01 22457777766544 2344455566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccC--C-------------CCCCC-------CCCCCCCCccEEEeeeEEEeCCccccc
Q 001091 550 PELISMIAQTKVSLYRIQEFIKEDN--Q-------------KKPIT-------EPTSKASDVAIDIEAGEYAWDAREENF 607 (1159)
Q Consensus 550 p~~i~~~~~a~vs~~RI~~fL~~~e--~-------------~~~~~-------~~~~~~~~~~I~~~~~sf~w~~~~~~~ 607 (1159)
...-..+.+-..-.+||.++++.-. . .+... .....+.+..|++++++++-|++
T Consensus 371 ~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~---- 446 (659)
T KOG0060|consen 371 VDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN---- 446 (659)
T ss_pred HHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC----
Confidence 6677777777777888888875211 0 00000 01112345789999999998763
Q ss_pred CCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEE--CC---EEEEEecCCCCCCCcHHHHHhc
Q 001091 608 KKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV--HG---KKAYVPQSSWIQTGTIRENILF 681 (1159)
Q Consensus 608 ~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v--~g---~iayv~Q~pwi~~gTIreNIlf 681 (1159)
.....+| |++|+.|+-+.|+||+|||||||++.+-|..+..+|++ .- +| .+-|+||.|+.-.||+||-+.+
T Consensus 447 --g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l-~k~~~~~~~~lfflPQrPYmt~GTLRdQvIY 523 (659)
T KOG0060|consen 447 --GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKL-TKPTDGGPKDLFFLPQRPYMTLGTLRDQVIY 523 (659)
T ss_pred --CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeE-EecccCCCCceEEecCCCCccccchhheeec
Confidence 2445666 99999999999999999999999999999999999998 54 33 3889999999999999999999
Q ss_pred CC--------CCChHHHHHHHHHhccchHHHhccCCCCccc-cCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 001091 682 GK--------DMRQSFYEEVLEGCALNQDIEMWADGDLSVV-GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752 (1159)
Q Consensus 682 G~--------~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~I-Ge~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD 752 (1159)
-. -.++++..+.++-.+|.+-++. .+|.++++ =|=+..||+|++||+|+||-+|++|++-+|||+|||||
T Consensus 524 P~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~ 602 (659)
T KOG0060|consen 524 PLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVT 602 (659)
T ss_pred cCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhcc
Confidence 71 2467899999999999765554 45666544 46688999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeC
Q 001091 753 AHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKD 794 (1159)
Q Consensus 753 ~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~ 794 (1159)
.++|..+.+.|= ..|-|-|-|.||-+.-+.-|.++-|+.
T Consensus 603 ~dvE~~~Yr~~r---~~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 603 EDVEGALYRKCR---EMGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHHHH---HcCCeEEEeccHHHHHhhhhEEEEecC
Confidence 999999887652 248899999999999999999999975
No 259
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-33 Score=293.62 Aligned_cols=158 Identities=37% Similarity=0.493 Sum_probs=141.0
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|++++|+. .+++++ |+++++||.++|+||+|||||||+++|.|+++|++|+| .++|
T Consensus 1 i~~~~l~~~~~~--------~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (178)
T cd03229 1 LELKNVSKRYGQ--------KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI-LIDGEDLTDLEDEL 71 (178)
T ss_pred CEEEEEEEEECC--------eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEccccchhH
Confidence 468999999963 368999 99999999999999999999999999999999999998 7655
Q ss_pred -----EEEEEecCCCCCC-CcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHH
Q 001091 660 -----KKAYVPQSSWIQT-GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1159)
Q Consensus 660 -----~iayv~Q~pwi~~-gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLAR 733 (1159)
.++|++|+|.++. .|++||+.+. ||||||||++|||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~ 113 (178)
T cd03229 72 PPLRRRIGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALAR 113 (178)
T ss_pred HHHhhcEEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHH
Confidence 3799999998875 5999999764 9999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCccccc-ccCEEEEEeCCe
Q 001091 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGK 796 (1159)
Q Consensus 734 Aly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~-~aD~Iivl~~G~ 796 (1159)
|+.++|++++|||||++||+.+...+.+ .++.+.+ ++|+|++||+.+.++ .||+|++|++|+
T Consensus 114 al~~~p~llilDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 114 ALAMDPDVLLLDEPTSALDPITRREVRA-LLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999876654 5655543 699999999999987 599999999985
No 260
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.2e-32 Score=306.05 Aligned_cols=196 Identities=23% Similarity=0.315 Sum_probs=159.3
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCC--ccCCCCcEEEECC-------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE--IPRISGAAIKVHG------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe--~~~~~G~i~~v~g------- 659 (1159)
.++++|+++.|++ .+.+++ |+++++||+++|+|++|||||||+++|.|. ++|++|+| .++|
T Consensus 7 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i-~~~g~~~~~~~ 77 (252)
T CHL00131 7 ILEIKNLHASVNE--------NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDI-LFKGESILDLE 77 (252)
T ss_pred eEEEEeEEEEeCC--------EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceE-EECCEEcccCC
Confidence 5899999999963 358999 999999999999999999999999999998 68999998 7755
Q ss_pred -------EEEEEecCCCCCCC-cHHHHHhcCCC----------CC----hHHHHHHHHHhccchHHHhccCCCCccccCC
Q 001091 660 -------KKAYVPQSSWIQTG-TIRENILFGKD----------MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1159)
Q Consensus 660 -------~iayv~Q~pwi~~g-TIreNIlfG~~----------~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~ 717 (1159)
.++|++|+|.++.+ |+++|+.++.. .+ .++..++++.+++.+. ..+..
T Consensus 78 ~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~ 147 (252)
T CHL00131 78 PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPS----------FLSRN 147 (252)
T ss_pred hhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchh----------hhccc
Confidence 27899999988875 89999876421 01 1233445555554321 12233
Q ss_pred CC-CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc--cCEEEEEe
Q 001091 718 GI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA--ADLVLVMK 793 (1159)
Q Consensus 718 G~-~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~--aD~Iivl~ 793 (1159)
.. .||||||||++||||++++|+++||||||++||+.+.+.+. +.++.+. +++|+|++||+++.+.. ||+|++|+
T Consensus 148 ~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~ 226 (252)
T CHL00131 148 VNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIA-EGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQ 226 (252)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEe
Confidence 33 59999999999999999999999999999999999987765 4566554 48999999999998864 89999999
Q ss_pred CCeEEEecChHH
Q 001091 794 DGKIEQSGKYED 805 (1159)
Q Consensus 794 ~G~I~e~Gt~~e 805 (1159)
+|++++.|++++
T Consensus 227 ~G~i~~~~~~~~ 238 (252)
T CHL00131 227 NGKIIKTGDAEL 238 (252)
T ss_pred CCEEEEecChhh
Confidence 999999999874
No 261
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=4.5e-33 Score=305.01 Aligned_cols=180 Identities=32% Similarity=0.460 Sum_probs=148.9
Q ss_pred ccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE--------EEEEecCCCCCC-CcHHHHHhcCC
Q 001091 614 LTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------KAYVPQSSWIQT-GTIRENILFGK 683 (1159)
Q Consensus 614 L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~--------iayv~Q~pwi~~-gTIreNIlfG~ 683 (1159)
+++ ||++++||+++|+||+|||||||+++|.|+++|.+|+| .++|. .+|++|+|-++. .|++||+.++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~ 79 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGV-ILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAV 79 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCCCChhheEEecCcccCCCCCHHHHHHHHH
Confidence 467 99999999999999999999999999999999999999 88773 489999998876 69999998752
Q ss_pred -----CCCh----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 001091 684 -----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAH 754 (1159)
Q Consensus 684 -----~~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~ 754 (1159)
..++ ++.++.++.+++.+.. .....+||||||||++||||+.++|+++||||||++||+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 80 DRVLPDLSKSERRAIVEEHIALVGLTEAA-----------DKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 (230)
T ss_pred HhcccCCCHHHHHHHHHHHHHHcCCHHHH-----------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 2222 2345556666654332 2345689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEeCCeEEEecChHHH
Q 001091 755 TGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDL 806 (1159)
Q Consensus 755 t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL 806 (1159)
+.+.+.+ .+..+. .|+|+|++||+++.+. .||+|++|++|++++.|+..++
T Consensus 149 ~~~~l~~-~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 149 TRGNLQE-ELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 9877654 565554 3789999999999875 5999999999999998876554
No 262
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.3e-33 Score=294.13 Aligned_cols=158 Identities=29% Similarity=0.500 Sum_probs=140.1
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|++++| .+++ |+++++|+.++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 4 ~l~~~~l~~~~------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 70 (182)
T cd03215 4 VLEVRGLSVKG------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEI-TLDGKPVTRRSPR 70 (182)
T ss_pred EEEEeccEEEe------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCccCHH
Confidence 48899998876 5788 99999999999999999999999999999999999998 7765
Q ss_pred -----EEEEEecCC----CCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHH
Q 001091 660 -----KKAYVPQSS----WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1159)
Q Consensus 660 -----~iayv~Q~p----wi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIa 730 (1159)
.++|++|++ ..++.|++||+.++.. ||||||||++
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~ 114 (182)
T cd03215 71 DAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVV 114 (182)
T ss_pred HHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHH
Confidence 489999985 4567899999987532 9999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeE
Q 001091 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1159)
Q Consensus 731 LARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I 797 (1159)
||||++.+|+++||||||++||+++.+.+. +.++.+. +++|+|++||+++.++. ||+|++|++|++
T Consensus 115 la~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 115 LARWLARDPRVLILDEPTRGVDVGAKAEIY-RLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHccCCCEEEECCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999987765 4566554 47999999999998866 999999999975
No 263
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-32 Score=323.30 Aligned_cols=209 Identities=21% Similarity=0.286 Sum_probs=169.8
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecC
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~ 667 (1159)
..++++|++|.|+.. ...++|++ ||++++|++++|+||+|||||||+++|.|+++|.+|+| .++|...++++.
T Consensus 20 ~mL~lknL~~~~~~~-----~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI-~I~G~~~~i~~~ 93 (549)
T PRK13545 20 PFDKLKDLFFRSKDG-----EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV-DIKGSAALIAIS 93 (549)
T ss_pred ceeEEEEEEEecCCC-----ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEE-EECCEeeeEEec
Confidence 358889999888754 23468999 99999999999999999999999999999999999999 999977677666
Q ss_pred CCCC-CCcHHHHHhcCC---CCChH----HHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCC
Q 001091 668 SWIQ-TGTIRENILFGK---DMRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS 739 (1159)
Q Consensus 668 pwi~-~gTIreNIlfG~---~~d~~----~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a 739 (1159)
+.+. ..|++|||.++. ..+++ +.+++++.++|.+.++ ....+||||||||++||||+..+|
T Consensus 94 ~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld-----------~~~~~LSGGQrQRVaLArAL~~~P 162 (549)
T PRK13545 94 SGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIY-----------QPVKTYSSGMKSRLGFAISVHINP 162 (549)
T ss_pred cccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhh-----------CCcccCCHHHHHHHHHHHHHHhCC
Confidence 6554 469999998743 22322 2345666666654433 345689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHHHHhhcchHHHH
Q 001091 740 DVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVR 816 (1159)
Q Consensus 740 ~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~~ 816 (1159)
+++||||||++||+.+.+.+.+ .+..+. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.. .-..|.+
T Consensus 163 ~LLLLDEPTsgLD~~sr~~Lle-lL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~-~~~~~~~ 239 (549)
T PRK13545 163 DILVIDEALSVGDQTFTKKCLD-KMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD-HYDEFLK 239 (549)
T ss_pred CEEEEECCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh-hHHHHHH
Confidence 9999999999999999887654 465543 48999999999998865 99999999999999999999887 3333433
No 264
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.3e-33 Score=288.98 Aligned_cols=204 Identities=28% Similarity=0.449 Sum_probs=171.4
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE--------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~-------- 660 (1159)
-++++|++-.|.. ..+|++ ||++++||+++++|++|+||||||++|.|..++.+|+| ..+|.
T Consensus 3 mL~v~~l~~~YG~--------~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I-~~~G~dit~~p~~ 73 (237)
T COG0410 3 MLEVENLSAGYGK--------IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI-IFDGEDITGLPPH 73 (237)
T ss_pred ceeEEeEeecccc--------eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeE-EECCeecCCCCHH
Confidence 3688999999964 478999 99999999999999999999999999999999999999 88773
Q ss_pred ------EEEEecCCCCCC-CcHHHHHhcCCCCChH-HHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHH
Q 001091 661 ------KAYVPQSSWIQT-GTIRENILFGKDMRQS-FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1159)
Q Consensus 661 ------iayv~Q~pwi~~-gTIreNIlfG~~~d~~-~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLA 732 (1159)
++||||.-.+|. .||+||+..|....+. +..+. .+++-++.+|. .......+|.+|||||+|-+|||
T Consensus 74 ~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~----~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAia 148 (237)
T COG0410 74 ERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER----DLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIA 148 (237)
T ss_pred HHHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccc----cHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHH
Confidence 899999999885 6999999988543221 11111 02333455553 22334678999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCccc-ccccCEEEEEeCCeEEEecChHHHHh
Q 001091 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 733 RAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~-l~~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
|||.++|+++|||||+.+|-|...+.||+ .|..+.+ +-||++|-++..+ ++.||+.+||++|+|+.+|+.+||.+
T Consensus 149 RALm~~PklLLLDEPs~GLaP~iv~~I~~-~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 149 RALMSRPKLLLLDEPSEGLAPKIVEEIFE-AIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred HHHhcCCCEEEecCCccCcCHHHHHHHHH-HHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 99999999999999999999999999986 4666653 5699999999987 57899999999999999999999987
No 265
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=9.1e-33 Score=336.62 Aligned_cols=198 Identities=26% Similarity=0.410 Sum_probs=167.4
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|++++|++ .++++| ||++++|++++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 11 ~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 81 (510)
T PRK15439 11 LLCARSISKQYSG--------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL-EIGGNPCARLTPA 81 (510)
T ss_pred eEEEEeEEEEeCC--------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCCCCHH
Confidence 5999999999963 358999 99999999999999999999999999999999999999 8876
Q ss_pred -----EEEEEecCCCCCC-CcHHHHHhcCCCCC---hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHH
Q 001091 660 -----KKAYVPQSSWIQT-GTIRENILFGKDMR---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1159)
Q Consensus 660 -----~iayv~Q~pwi~~-gTIreNIlfG~~~d---~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIa 730 (1159)
.++|++|++.++. .|++||+.|+.... +++.+++++..+|..+. ..+..+||||||||++
T Consensus 82 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ 150 (510)
T PRK15439 82 KAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDL-----------DSSAGSLEVADRQIVE 150 (510)
T ss_pred HHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccc-----------cCChhhCCHHHHHHHH
Confidence 3899999988766 59999999975422 23455566666554322 2345689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeCCeEEEecChHHHHh
Q 001091 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 731 LARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
||||+..+|+++||||||++||+...+.+.+ .++.+. +|+|+|++||+++.+. .||+|++|++|+|++.|+++++..
T Consensus 151 la~aL~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 151 ILRGLMRDSRILILDEPTASLTPAETERLFS-RIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 9999999999999999999999999887765 455543 4899999999999875 599999999999999999998865
No 266
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=5e-33 Score=299.48 Aligned_cols=179 Identities=30% Similarity=0.409 Sum_probs=148.3
Q ss_pred EeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC------------
Q 001091 593 IEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------ 659 (1159)
Q Consensus 593 ~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g------------ 659 (1159)
++|+++.|++ .+.++| |+++++||.++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 1 i~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~~~ 71 (206)
T TIGR03608 1 LKNISKKFGD--------KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQV-YLNGKETPPLNSKKAS 71 (206)
T ss_pred CcceEEEECC--------EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEccccchhhHH
Confidence 4688899863 368999 99999999999999999999999999999999999998 6654
Q ss_pred -----EEEEEecCCCCCC-CcHHHHHhcCCCC---C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHH
Q 001091 660 -----KKAYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1159)
Q Consensus 660 -----~iayv~Q~pwi~~-gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQK 726 (1159)
.++|++|+|.++. .|++||+.++..+ + +++.++.++..++.++. .....+||||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~ 140 (206)
T TIGR03608 72 KFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKL-----------KQKIYELSGGEQ 140 (206)
T ss_pred HHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhh-----------cCChhhCCHHHH
Confidence 3899999999886 7999999885321 1 23445566665554332 334568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEEEEE
Q 001091 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVM 792 (1159)
Q Consensus 727 QRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~Iivl 792 (1159)
||++||||++++|+++||||||++||+.+.+.+. +.++.+. +++|+|++||+++.+..||+|++|
T Consensus 141 qr~~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 141 QRVALARAILKDPPLILADEPTGSLDPKNRDEVL-DLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999977665 4566554 479999999999988889999875
No 267
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.7e-32 Score=302.40 Aligned_cols=198 Identities=21% Similarity=0.272 Sum_probs=153.1
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCc--cCCCCcEEEECC--------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVHG-------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~--~~~~G~i~~v~g-------- 659 (1159)
|+++|+++.|++ .+++++ |++|++|++++|+|++|||||||+++|.|+. +|.+|+| .++|
T Consensus 2 i~~~nl~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i-~~~g~~~~~~~~ 72 (248)
T PRK09580 2 LSIKDLHVSVED--------KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV-EFKGKDLLELSP 72 (248)
T ss_pred eEEEEEEEEeCC--------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEE-EECCCccccCCH
Confidence 689999999963 358999 9999999999999999999999999999995 6999998 7765
Q ss_pred ------EEEEEecCCCCCCC-cHHHHHhcCC-------C---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCC
Q 001091 660 ------KKAYVPQSSWIQTG-TIRENILFGK-------D---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1159)
Q Consensus 660 ------~iayv~Q~pwi~~g-TIreNIlfG~-------~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G 718 (1159)
.++|++|+|.++.. |..+|+.+.. . .+ +++.++.++..+ +|+++.+... .
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~~--~ 143 (248)
T PRK09580 73 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK-------MPEDLLTRSV--N 143 (248)
T ss_pred HHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcC-------CChhhcccCC--C
Confidence 38999999987654 5555543211 0 01 011122222222 3333333211 1
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEccCcccccc--cCEEEEEeCC
Q 001091 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA--ADLVLVMKDG 795 (1159)
Q Consensus 719 ~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~-~kTvIlVTH~l~~l~~--aD~Iivl~~G 795 (1159)
.+||||||||++||||++++|+++||||||++||+.+.+.+.+ .++.+.+ ++|+|++||+++.+.. +|+|++|++|
T Consensus 144 ~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g 222 (248)
T PRK09580 144 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVAD-GVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQG 222 (248)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECC
Confidence 3799999999999999999999999999999999999776654 5655543 7999999999999876 8999999999
Q ss_pred eEEEecChHHHH
Q 001091 796 KIEQSGKYEDLI 807 (1159)
Q Consensus 796 ~I~e~Gt~~eL~ 807 (1159)
++++.|++++..
T Consensus 223 ~i~~~g~~~~~~ 234 (248)
T PRK09580 223 RIVKSGDFTLVK 234 (248)
T ss_pred eEEEeCCHHHHH
Confidence 999999988553
No 268
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2.8e-32 Score=292.36 Aligned_cols=171 Identities=27% Similarity=0.344 Sum_probs=145.9
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCC--ccCCCCcEEEECC--------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE--IPRISGAAIKVHG-------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe--~~~~~G~i~~v~g-------- 659 (1159)
++++|++++|++ .+.++| |+++++||.++|+|++|||||||+++|.|+ ++|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i-~~~g~~~~~~~~ 71 (200)
T cd03217 1 LEIKDLHVSVGG--------KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEI-LFKGEDITDLPP 71 (200)
T ss_pred CeEEEEEEEeCC--------EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEE-EECCEECCcCCH
Confidence 468999999963 368999 999999999999999999999999999999 57999998 7765
Q ss_pred ------EEEEEecCCCCCCC-cHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHH
Q 001091 660 ------KKAYVPQSSWIQTG-TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1159)
Q Consensus 660 ------~iayv~Q~pwi~~g-TIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLA 732 (1159)
.++|++|+|.++++ |+++|+ . ....+||||||||++||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~~~~~l------------------------~-----------~~~~~LS~G~~qrv~la 116 (200)
T cd03217 72 EERARLGIFLAFQYPPEIPGVKNADFL------------------------R-----------YVNEGFSGGEKKRNEIL 116 (200)
T ss_pred HHHhhCcEEEeecChhhccCccHHHHH------------------------h-----------hccccCCHHHHHHHHHH
Confidence 28999999988875 555544 0 01247999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc--ccCEEEEEeCCeEEEecChHHHH
Q 001091 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD--AADLVLVMKDGKIEQSGKYEDLI 807 (1159)
Q Consensus 733 RAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~--~aD~Iivl~~G~I~e~Gt~~eL~ 807 (1159)
||+.++|+++||||||++||+.+.+.+. +++..+. +++|+|++||+++.+. .||+|++|++|++.+.| ..|+.
T Consensus 117 ral~~~p~illlDEPt~~LD~~~~~~l~-~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 117 QLLLLEPDLAILDEPDSGLDIDALRLVA-EVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 9999999999999999999999977664 4565554 4799999999999987 69999999999999999 44454
No 269
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-32 Score=339.40 Aligned_cols=219 Identities=21% Similarity=0.301 Sum_probs=172.5
Q ss_pred ccEEEeeeEEEeCCccc---ccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-----
Q 001091 589 VAIDIEAGEYAWDAREE---NFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~---~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g----- 659 (1159)
..++++|+++.|+.... .......++++ ||+|++||+++|+|++|||||||+++|+|..+|++|+| .++|
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I-~~~g~~i~~ 390 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEI-IFNGQRIDT 390 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEE-EECCEECCc
Confidence 35999999999963200 00012358999 99999999999999999999999999999999999999 7765
Q ss_pred -----------EEEEEecCCC--C-CCCcHHHHHhcCC---CC-C----hHHHHHHHHHhccch-HHHhccCCCCccccC
Q 001091 660 -----------KKAYVPQSSW--I-QTGTIRENILFGK---DM-R----QSFYEEVLEGCALNQ-DIEMWADGDLSVVGE 716 (1159)
Q Consensus 660 -----------~iayv~Q~pw--i-~~gTIreNIlfG~---~~-d----~~~y~~vl~ac~L~~-dl~~lp~Gd~T~IGe 716 (1159)
.++|++|+|. + .+.||+||+.++. .. + .++..++++.++|.+ ..+.
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~----------- 459 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWR----------- 459 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhC-----------
Confidence 3899999983 4 4579999997642 11 1 134556677777753 2232
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccc-cCEEEEEe
Q 001091 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMK 793 (1159)
Q Consensus 717 ~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~-aD~Iivl~ 793 (1159)
...+|||||||||+||||+..+|+++|||||||+||+.+.+.+.+ .++.+. .|+|+|+|||+++.+.. ||+|++|+
T Consensus 460 ~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~-ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~ 538 (623)
T PRK10261 460 YPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIIN-LLLDLQRDFGIAYLFISHDMAVVERISHRVAVMY 538 (623)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 335799999999999999999999999999999999999887764 565554 37999999999998754 99999999
Q ss_pred CCeEEEecChHHHHhhcchHHH-HHHHH
Q 001091 794 DGKIEQSGKYEDLIADQNSELV-RQMKA 820 (1159)
Q Consensus 794 ~G~I~e~Gt~~eL~~~~~~~~~-~l~~~ 820 (1159)
+|+|++.|+.+++..+....|. .++.+
T Consensus 539 ~G~iv~~g~~~~i~~~p~~~~~~~l~~~ 566 (623)
T PRK10261 539 LGQIVEIGPRRAVFENPQHPYTRKLMAA 566 (623)
T ss_pred CCEEEEecCHHHHhcCCCCHHHHHHHhh
Confidence 9999999999999763334443 34443
No 270
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-32 Score=333.91 Aligned_cols=198 Identities=21% Similarity=0.362 Sum_probs=162.8
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC--CCCcEEEECC-------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHG------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~--~~G~i~~v~g------- 659 (1159)
.++++|++++|++ .++++| ||++++||+++|+||+|||||||+++|.|.++| ++|+| .++|
T Consensus 5 ~l~~~nl~~~~~~--------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i-~~~g~~~~~~~ 75 (506)
T PRK13549 5 LLEMKNITKTFGG--------VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEI-IFEGEELQASN 75 (506)
T ss_pred eEEEeeeEEEeCC--------eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE-EECCEECCCCC
Confidence 4899999999963 368999 999999999999999999999999999999986 89999 7765
Q ss_pred -------EEEEEecCCCCCC-CcHHHHHhcCCCC------ChH----HHHHHHHHhccchHHHhccCCCCccccCCCCCC
Q 001091 660 -------KKAYVPQSSWIQT-GTIRENILFGKDM------RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1159)
Q Consensus 660 -------~iayv~Q~pwi~~-gTIreNIlfG~~~------d~~----~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~L 721 (1159)
.++||+|+|.++. .|++|||.++... +.+ +.+++++..++. ........+|
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~L 144 (506)
T PRK13549 76 IRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD-----------INPATPVGNL 144 (506)
T ss_pred HHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC-----------CCcccchhhC
Confidence 2899999987765 5999999987431 221 223333333332 1223445689
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeCCeEEE
Q 001091 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1159)
Q Consensus 722 SGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e 799 (1159)
|||||||++||||+..+|+++||||||++||+...+.+.+ .+..+. +|+|+|++||+++.+. .||+|++|++|+|++
T Consensus 145 SgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~ 223 (506)
T PRK13549 145 GLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLD-IIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIG 223 (506)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEee
Confidence 9999999999999999999999999999999999877654 565543 5899999999999886 499999999999999
Q ss_pred ecChHHHHh
Q 001091 800 SGKYEDLIA 808 (1159)
Q Consensus 800 ~Gt~~eL~~ 808 (1159)
.|+.+++..
T Consensus 224 ~~~~~~~~~ 232 (506)
T PRK13549 224 TRPAAGMTE 232 (506)
T ss_pred ecccccCCH
Confidence 999888754
No 271
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2e-32 Score=333.30 Aligned_cols=198 Identities=23% Similarity=0.353 Sum_probs=162.8
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.|+++|++++|++ .++++| ||++++|++++|+||+|||||||+++|.|+++|++|+| .++|
T Consensus 4 ~i~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~ 74 (501)
T PRK10762 4 LLQLKGIDKAFPG--------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSI-LYLGKEVTFNGPK 74 (501)
T ss_pred eEEEeeeEEEeCC--------eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCHH
Confidence 4899999999963 368999 99999999999999999999999999999999999999 7765
Q ss_pred -----EEEEEecCCCCCC-CcHHHHHhcCCCC-------Ch----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCC
Q 001091 660 -----KKAYVPQSSWIQT-GTIRENILFGKDM-------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1159)
Q Consensus 660 -----~iayv~Q~pwi~~-gTIreNIlfG~~~-------d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LS 722 (1159)
.++|++|++-++. .|++|||.|+... +. ++.+++++.++|.+. ......+||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS 143 (501)
T PRK10762 75 SSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS-----------SDKLVGELS 143 (501)
T ss_pred HHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCC-----------ccCchhhCC
Confidence 3899999987664 6999999987431 22 123344444444221 123456899
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeCCeEEEe
Q 001091 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQS 800 (1159)
Q Consensus 723 GGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~ 800 (1159)
||||||++||||+..+|+++||||||++||+.+.+.+.+ .++.+. +++|+|++||+++.+. .||+|++|++|++++.
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~ 222 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFR-VIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAE 222 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999877754 555543 4789999999999875 5999999999999999
Q ss_pred cChHHHHh
Q 001091 801 GKYEDLIA 808 (1159)
Q Consensus 801 Gt~~eL~~ 808 (1159)
|+.+++..
T Consensus 223 ~~~~~~~~ 230 (501)
T PRK10762 223 REVADLTE 230 (501)
T ss_pred cCcCcCCH
Confidence 99887754
No 272
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-32 Score=334.67 Aligned_cols=198 Identities=24% Similarity=0.313 Sum_probs=163.5
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|++++|++ .++++| ||++++||+++|+||+|||||||+++|.|+.+|.+|+| .++|
T Consensus 5 ~l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~i~~~~~~ 75 (510)
T PRK09700 5 YISMAGIGKSFGP--------VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI-TINNINYNKLDHK 75 (510)
T ss_pred eEEEeeeEEEcCC--------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEE-EECCEECCCCCHH
Confidence 4899999999963 358999 99999999999999999999999999999999999999 7765
Q ss_pred -----EEEEEecCCCCCC-CcHHHHHhcCCC-----C-----Ch----HHHHHHHHHhccchHHHhccCCCCccccCCCC
Q 001091 660 -----KKAYVPQSSWIQT-GTIRENILFGKD-----M-----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1159)
Q Consensus 660 -----~iayv~Q~pwi~~-gTIreNIlfG~~-----~-----d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~ 719 (1159)
.++||+|++-++. .|++||+.++.. + +. ++.+++++.++|.+. ......
T Consensus 76 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~ 144 (510)
T PRK09700 76 LAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-----------LDEKVA 144 (510)
T ss_pred HHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC-----------cccchh
Confidence 3899999987765 599999988642 0 11 223344444444321 233456
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeCCeE
Q 001091 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1159)
Q Consensus 720 ~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I 797 (1159)
+||||||||++||||+..+|+++||||||++||+.+.+.+.+ .+..+. +|+|+|+|||+++.+. .||+|++|++|++
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i 223 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFL-IMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSS 223 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 899999999999999999999999999999999999877754 555543 4899999999999886 5999999999999
Q ss_pred EEecChHHHHh
Q 001091 798 EQSGKYEDLIA 808 (1159)
Q Consensus 798 ~e~Gt~~eL~~ 808 (1159)
++.|+++++..
T Consensus 224 ~~~g~~~~~~~ 234 (510)
T PRK09700 224 VCSGMVSDVSN 234 (510)
T ss_pred eeecchhhCCH
Confidence 99999988754
No 273
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.2e-32 Score=298.14 Aligned_cols=177 Identities=29% Similarity=0.478 Sum_probs=147.1
Q ss_pred eEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------EEEEEecCCCC---CCCcHHHHHhcCCC--
Q 001091 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------KKAYVPQSSWI---QTGTIRENILFGKD-- 684 (1159)
Q Consensus 618 l~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------~iayv~Q~pwi---~~gTIreNIlfG~~-- 684 (1159)
|++++||+++|+|++|||||||+++|.|.++|.+|+| .++| .++|++|+|-+ ++.|++||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTV-KVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH 79 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence 4688999999999999999999999999999999999 8887 38999999865 45899999987631
Q ss_pred ---C------ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 001091 685 ---M------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755 (1159)
Q Consensus 685 ---~------d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t 755 (1159)
+ ++++.+++++.+++.+.. .....+||||||||++||||+.++|+++||||||++||+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~ 148 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVGLTELA-----------DRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT 148 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 1 122344555655554322 23445799999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeCCeEEEecChHHHHh
Q 001091 756 GTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 756 ~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
.+.+.+ .++.+. +++|+|++||+++.+. .||+|+++ +|++++.|+++++.+
T Consensus 149 ~~~l~~-~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 149 QELLTE-LFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred HHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 887765 455554 5889999999999875 59999999 899999999999876
No 274
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.9e-32 Score=299.79 Aligned_cols=184 Identities=20% Similarity=0.326 Sum_probs=148.8
Q ss_pred ccccC-CeEee-----CCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-EEEEEecCCC-CCCCcHHHHHhcCC
Q 001091 612 IKLTD-KMKIM-----KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-KKAYVPQSSW-IQTGTIRENILFGK 683 (1159)
Q Consensus 612 ~~L~~-nl~i~-----~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-~iayv~Q~pw-i~~gTIreNIlfG~ 683 (1159)
..+.+ +|+++ +||+++|+||+|||||||+++|.|+++|.+|+| .++| +++|++|++. .++.|++||+.+..
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i-~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~ 86 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI-EIELDTVSYKPQYIKADYEGTVRDLLSSIT 86 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeE-EECCceEEEecccccCCCCCCHHHHHHHHh
Confidence 35566 66665 799999999999999999999999999999999 8988 8999999987 47899999997543
Q ss_pred C-C--ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH
Q 001091 684 D-M--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760 (1159)
Q Consensus 684 ~-~--d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if 760 (1159)
. . ++++.+++++.++|.+.+ .....+||||||||++||||+.++|++|||||||++||+.+...+.
T Consensus 87 ~~~~~~~~~~~~~l~~l~l~~~~-----------~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~ 155 (246)
T cd03237 87 KDFYTHPYFKTEIAKPLQIEQIL-----------DREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMAS 155 (246)
T ss_pred hhccccHHHHHHHHHHcCCHHHh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 2 1 123456677766664332 2455689999999999999999999999999999999999977664
Q ss_pred HHHHhhhc--CCcEEEEEccCcccccc-cCEEEEEeCCeEE--EecChHHHHh
Q 001091 761 KQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE--QSGKYEDLIA 808 (1159)
Q Consensus 761 ~~~i~g~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~--e~Gt~~eL~~ 808 (1159)
+.++.+. .++|+|+|||+++.+.. ||+|++|+++..+ ..++++++.+
T Consensus 156 -~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~ 207 (246)
T cd03237 156 -KVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLRS 207 (246)
T ss_pred -HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHHH
Confidence 4566654 37999999999999874 9999999765443 5567766654
No 275
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=5.5e-32 Score=299.76 Aligned_cols=182 Identities=27% Similarity=0.453 Sum_probs=151.5
Q ss_pred cccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-------------EEEEEecCC-CCCCCcHHH
Q 001091 613 KLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSS-WIQTGTIRE 677 (1159)
Q Consensus 613 ~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------------~iayv~Q~p-wi~~gTIre 677 (1159)
.|++ ||++++|+.++|+|++|||||||+++|.|.+++ +|+| .++| .++|++|++ ..++.|++|
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i-~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSI-QFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEE-EECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence 5889 999999999999999999999999999999864 9998 8776 279999997 456789999
Q ss_pred HHhcCCCC--C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHcc-------CCCEEEE
Q 001091 678 NILFGKDM--R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS-------NSDVYIF 744 (1159)
Q Consensus 678 NIlfG~~~--d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~-------~a~I~LL 744 (1159)
|+.++.+. + +++.+++++..+|.+.+ ......||||||||++||||+.+ +|+++||
T Consensus 89 nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llll 157 (248)
T PRK03695 89 YLTLHQPDKTRTEAVASALNEVAEALGLDDKL-----------GRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157 (248)
T ss_pred HHHhcCccCCCcHHHHHHHHHHHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 99987432 1 23455666666654322 34567899999999999999998 7799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccc-cccCEEEEEeCCeEEEecChHHHHh
Q 001091 745 DDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 745 DDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
||||++||+.+.+.+. +.++.+. +++|+|++||+++.+ ..||+|++|++|++++.|+++++.+
T Consensus 158 DEPt~~LD~~~~~~l~-~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 158 DEPMNSLDVAQQAALD-RLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred cCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 9999999999977665 5565554 479999999999976 5699999999999999999988865
No 276
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.1e-32 Score=292.86 Aligned_cols=185 Identities=22% Similarity=0.280 Sum_probs=151.1
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
..++++|++++|++ .+.+++ ||++++||.++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 10 ~~l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~i~~~~~ 80 (214)
T PRK13543 10 PLLAAHALAFSRNE--------EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQI-QIDGKTATRGDR 80 (214)
T ss_pred ceEEEeeEEEecCC--------ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeE-EECCEEccchhh
Confidence 45899999999963 358999 99999999999999999999999999999999999999 8876
Q ss_pred --EEEEEecCCCCCCC-cHHHHHhcCCCC----ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHH
Q 001091 660 --KKAYVPQSSWIQTG-TIRENILFGKDM----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1159)
Q Consensus 660 --~iayv~Q~pwi~~g-TIreNIlfG~~~----d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLA 732 (1159)
.++|++|++.++.+ |++||+.++..+ .+++.++.++..+|.+ ....+..+||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la 149 (214)
T PRK13543 81 SRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAG-----------YEDTLVRQLSAGQKKRLALA 149 (214)
T ss_pred hhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChh-----------hccCChhhCCHHHHHHHHHH
Confidence 28999999988875 999999775332 1223334444433321 12344568999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeC
Q 001091 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKD 794 (1159)
Q Consensus 733 RAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~ 794 (1159)
||++++|+++||||||++||+...+.+. +.++.+. +++|+|++||+++.++ .||++++++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 150 RLWLSPAPLWLLDEPYANLDLEGITLVN-RMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999977654 4665443 5799999999999885 5899999864
No 277
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.3e-33 Score=273.02 Aligned_cols=178 Identities=25% Similarity=0.393 Sum_probs=154.5
Q ss_pred CcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-------------EEEEEecCCCCCCCcH
Q 001091 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTI 675 (1159)
Q Consensus 610 ~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------------~iayv~Q~pwi~~gTI 675 (1159)
+.++|++ ||.+.+||.++|+||+|||||||++.+.-+.+|++|.+ ...| .|+||.|.|-+|-+||
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l-~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL-LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceE-EEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 5688999 99999999999999999999999999999999999998 8777 4899999999999999
Q ss_pred HHHHhcCC-----CCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 001091 676 RENILFGK-----DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSA 750 (1159)
Q Consensus 676 reNIlfG~-----~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SA 750 (1159)
.||..|-- ..|++.....++..+| +++....+-.+||||+||||+|+|-|---|+|+||||||||
T Consensus 94 eDNlifP~~~r~rr~dr~aa~~llar~~l----------~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsA 163 (223)
T COG4619 94 EDNLIFPWQIRNRRPDRAAALDLLARFAL----------PDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSA 163 (223)
T ss_pred hhccccchHHhccCCChHHHHHHHHHcCC----------chhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhh
Confidence 99999963 3566665555555444 34556677889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhhc--CCcEEEEEccCccc-ccccCEEEEEeCCeEEE
Q 001091 751 VDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEF-LDAADLVLVMKDGKIEQ 799 (1159)
Q Consensus 751 LD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~-l~~aD~Iivl~~G~I~e 799 (1159)
||.+..+.| ++.|..+. ++..++.|||..+. +++||+++-+..|++-+
T Consensus 164 LD~~nkr~i-e~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 164 LDESNKRNI-EEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred cChhhHHHH-HHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 999998776 66666655 47899999999987 89999999999988643
No 278
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-32 Score=338.86 Aligned_cols=206 Identities=21% Similarity=0.334 Sum_probs=166.7
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
..|+++|++++|+... ...++++| ||++++||+++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 11 ~~l~v~~l~~~y~~~~----~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i-~~~g~~~~~~~~ 85 (623)
T PRK10261 11 DVLAVENLNIAFMQEQ----QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLV-QCDKMLLRRRSR 85 (623)
T ss_pred ceEEEeceEEEecCCC----CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEE-EECCEEeccccc
Confidence 3699999999996420 12478999 99999999999999999999999999999999999998 6543
Q ss_pred -------------------EEEEEecCC--CCC-CCcHHHHHhcCCC----CCh----HHHHHHHHHhccchHHHhccCC
Q 001091 660 -------------------KKAYVPQSS--WIQ-TGTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADG 709 (1159)
Q Consensus 660 -------------------~iayv~Q~p--wi~-~gTIreNIlfG~~----~d~----~~y~~vl~ac~L~~dl~~lp~G 709 (1159)
.++||+|+| -++ +.||+|||.++.. .+. ++..++++..+|.+.
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~------- 158 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA------- 158 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh-------
Confidence 489999998 354 4699999988632 222 244455555555210
Q ss_pred CCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-C-CcEEEEEccCccccc-cc
Q 001091 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLD-AA 786 (1159)
Q Consensus 710 d~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~-~kTvIlVTH~l~~l~-~a 786 (1159)
.........+|||||||||+||||+..+|+++||||||++||+.+.+.+.+ .++.+. + |+|+|+|||+++.+. .|
T Consensus 159 -~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~-ll~~l~~~~g~tvi~itHdl~~~~~~a 236 (623)
T PRK10261 159 -QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ-LIKVLQKEMSMGVIFITHDMGVVAEIA 236 (623)
T ss_pred -hhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhC
Confidence 112334567899999999999999999999999999999999999887754 566654 3 899999999999875 59
Q ss_pred CEEEEEeCCeEEEecChHHHHh
Q 001091 787 DLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 787 D~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
|+|++|++|+|++.|+++++..
T Consensus 237 dri~vl~~G~i~~~g~~~~~~~ 258 (623)
T PRK10261 237 DRVLVMYQGEAVETGSVEQIFH 258 (623)
T ss_pred CEEEEeeCCeecccCCHHHhhc
Confidence 9999999999999999999875
No 279
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.98 E-value=2.6e-32 Score=297.71 Aligned_cols=190 Identities=26% Similarity=0.339 Sum_probs=148.4
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEec-CC
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQ-SS 668 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q-~p 668 (1159)
+.++|.+..|+ ..++++| ||++++||.++|+||+|||||||+++|.|+++|.+|+| .++|...+..+ .+
T Consensus 23 l~~~~~~~~~~--------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~~ 93 (224)
T cd03220 23 LGILGRKGEVG--------EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV-TVRGRVSSLLGLGG 93 (224)
T ss_pred hhhhhhhhhcC--------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEchhhcccc
Confidence 44555555554 2568999 99999999999999999999999999999999999999 99997554333 33
Q ss_pred CC-CCCcHHHHHhcCCCC---Ch----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 001091 669 WI-QTGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1159)
Q Consensus 669 wi-~~gTIreNIlfG~~~---d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~ 740 (1159)
.+ .+.|++||+.++... +. ++.+++++..+|.+.+ .....+||||||||++||||++++|+
T Consensus 94 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~laral~~~p~ 162 (224)
T cd03220 94 GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI-----------DLPVKTYSSGMKARLAFAIATALEPD 162 (224)
T ss_pred cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 33 467999999876431 22 1233444444443222 23346799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeCCeEEEec
Q 001091 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 741 I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~G 801 (1159)
++||||||++||+.+.+.+.+ .+..+. +++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 163 llllDEP~~gLD~~~~~~~~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 163 ILLIDEVLAVGDAAFQEKCQR-RLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred EEEEeCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999877655 455443 4789999999999876 59999999999998765
No 280
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.98 E-value=5.9e-32 Score=289.91 Aligned_cols=180 Identities=24% Similarity=0.285 Sum_probs=148.4
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++++|++ .+++++ |+++++||.++|+||+|||||||+++|.|+.+|.+|+| .++|
T Consensus 2 l~~~~l~~~~~~--------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v-~~~g~~~~~~~~~~ 72 (200)
T PRK13540 2 LDVIELDFDYHD--------QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEI-LFERQSIKKDLCTY 72 (200)
T ss_pred EEEEEEEEEeCC--------eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeE-EECCCccccCHHHH
Confidence 678999999963 358999 99999999999999999999999999999999999998 7776
Q ss_pred --EEEEEecCCCCC-CCcHHHHHhcCCCC--ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHH
Q 001091 660 --KKAYVPQSSWIQ-TGTIRENILFGKDM--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1159)
Q Consensus 660 --~iayv~Q~pwi~-~gTIreNIlfG~~~--d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARA 734 (1159)
.++|++|++.++ +.|++||+.++... ++.+.++.++..++.+. ......+||||||||++||||
T Consensus 73 ~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~~rv~lara 141 (200)
T PRK13540 73 QKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHL-----------IDYPCGLLSSGQKRQVALLRL 141 (200)
T ss_pred HhheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchh-----------hhCChhhcCHHHHHHHHHHHH
Confidence 489999999885 68999999987422 23344555555544321 122334799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEEEE
Q 001091 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLV 791 (1159)
Q Consensus 735 ly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~Iiv 791 (1159)
+.++|+++||||||++||+.+.+.+. +.++.+. +++|+|++||+.+++..||.-++
T Consensus 142 l~~~p~~lilDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 142 WMSKAKLWLLDEPLVALDELSLLTII-TKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred HhcCCCEEEEeCCCcccCHHHHHHHH-HHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 99999999999999999999987664 4565543 58999999999999999997654
No 281
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.98 E-value=8.4e-32 Score=288.91 Aligned_cols=181 Identities=27% Similarity=0.364 Sum_probs=152.1
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|+++.|+. .+.+++ |++|++||+++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 1 l~i~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (201)
T cd03231 1 LEADELTCERDG--------RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRV-LLNGGPLDFQRDSI 71 (201)
T ss_pred CEEEEEEEEeCC--------ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEecccccHHh
Confidence 468999999963 358999 99999999999999999999999999999999999998 7765
Q ss_pred --EEEEEecCCCCC-CCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 001091 660 --KKAYVPQSSWIQ-TGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1159)
Q Consensus 660 --~iayv~Q~pwi~-~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAl 735 (1159)
.++|++|++.++ +.|++||+.+..+ .++++.+++++..++.+... ....+||||||||++||||+
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral 140 (201)
T cd03231 72 ARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-----------RPVAQLSAGQQRRVALARLL 140 (201)
T ss_pred hhheEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-----------CchhhCCHHHHHHHHHHHHH
Confidence 489999998775 6899999988643 35667788888887764322 23468999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccc-cccCEEEEE
Q 001091 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVM 792 (1159)
Q Consensus 736 y~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l-~~aD~Iivl 792 (1159)
+++|+++||||||++||+.+.+.+. +.+..+. +++|+|++||+...+ ..+|+++++
T Consensus 141 ~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 141 LSGRPLWILDEPTTALDKAGVARFA-EAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999977765 4565543 489999999987654 568888876
No 282
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.98 E-value=3e-32 Score=299.71 Aligned_cols=178 Identities=24% Similarity=0.323 Sum_probs=144.4
Q ss_pred cccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC------------EEEEEe-cCCCCC-CCcH
Q 001091 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------KKAYVP-QSSWIQ-TGTI 675 (1159)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g------------~iayv~-Q~pwi~-~gTI 675 (1159)
.++|+| |+++++||+++|+|++|||||||+++|.|.++|++|+| .++| .++|++ |++.++ +.|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEV-RVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 568999 99999999999999999999999999999999999998 7765 478997 556664 6799
Q ss_pred HHHHhcCCC---CChH----HHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCC
Q 001091 676 RENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF 748 (1159)
Q Consensus 676 reNIlfG~~---~d~~----~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~ 748 (1159)
+||+.++.. .+++ +.+++++.+++.+.. + .+..+||||||||++||||+.++|+++||||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~----~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELL-------D----TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------c----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999977532 2222 223344444443222 2 234579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccc-cCEEEEEeCCeEEEec
Q 001091 749 SAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 749 SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~G 801 (1159)
++||+.+.+.+.+ .+..+. +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~-~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRN-FLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHH-HHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999887654 566553 37899999999998755 9999999999998765
No 283
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.98 E-value=9.3e-32 Score=330.79 Aligned_cols=205 Identities=26% Similarity=0.379 Sum_probs=165.8
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--EEEEEec
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQ 666 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--~iayv~Q 666 (1159)
-++++|++++|+++ .++++| ||+|++|++++|+||+|||||||+++|.|+++|.+|+| .+++ .++||+|
T Consensus 4 ~i~~~nls~~~~~~-------~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i-~~~~~~~i~~v~Q 75 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-------KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEA-RPAPGIKVGYLPQ 75 (552)
T ss_pred EEEEeeEEEecCCC-------CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecCCCEEEEEec
Confidence 48999999999622 468999 99999999999999999999999999999999999999 7764 6999999
Q ss_pred CCCCCC-CcHHHHHhcCCC-------------------CC--------hHHHHHHHHHhccch---H----HHhccCCCC
Q 001091 667 SSWIQT-GTIRENILFGKD-------------------MR--------QSFYEEVLEGCALNQ---D----IEMWADGDL 711 (1159)
Q Consensus 667 ~pwi~~-gTIreNIlfG~~-------------------~d--------~~~y~~vl~ac~L~~---d----l~~lp~Gd~ 711 (1159)
+|+++. .|++|||.++.. .+ .+++.++++.++... . ++.+ |..
T Consensus 76 ~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~ 153 (552)
T TIGR03719 76 EPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL--RCP 153 (552)
T ss_pred cCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC--CCC
Confidence 999875 699999987631 01 113445555555431 1 1222 221
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEE
Q 001091 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVL 790 (1159)
Q Consensus 712 T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Ii 790 (1159)
.......+||||||||++||||++++|+++||||||++||+++.+.+.+ .+... ++|+|+|||+++++.. ||+|+
T Consensus 154 -~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~-~L~~~--~~tvIiisHd~~~~~~~~d~v~ 229 (552)
T TIGR03719 154 -PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQ-HLQEY--PGTVVAVTHDRYFLDNVAGWIL 229 (552)
T ss_pred -cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHH-HHHhC--CCeEEEEeCCHHHHHhhcCeEE
Confidence 1245667999999999999999999999999999999999999887654 45544 3699999999999865 89999
Q ss_pred EEeCCeEE-EecChHHHHh
Q 001091 791 VMKDGKIE-QSGKYEDLIA 808 (1159)
Q Consensus 791 vl~~G~I~-e~Gt~~eL~~ 808 (1159)
+|++|+++ ..|++++..+
T Consensus 230 ~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 230 ELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred EEECCEEEEecCCHHHHHH
Confidence 99999976 7899998765
No 284
>PLN03211 ABC transporter G-25; Provisional
Probab=99.98 E-value=1e-31 Score=333.40 Aligned_cols=190 Identities=28% Similarity=0.420 Sum_probs=159.6
Q ss_pred CcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCC--CCcEEEECC---------EEEEEecCCCCCC-CcHH
Q 001091 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI--SGAAIKVHG---------KKAYVPQSSWIQT-GTIR 676 (1159)
Q Consensus 610 ~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~--~G~i~~v~g---------~iayv~Q~pwi~~-gTIr 676 (1159)
++.+|+| |+++++||+++|+||+|||||||+++|.|..+|. +|+| .++| +++||+|++.++. .|++
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I-~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 158 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTI-LANNRKPTKQILKRTGFVTQDDILYPHLTVR 158 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEE-EECCEECchhhccceEEECcccccCCcCCHH
Confidence 3568999 9999999999999999999999999999999875 8999 8887 3899999999885 6999
Q ss_pred HHHhcCC------CCChH----HHHHHHHHhccchHHHhccCCCCccccCC-CCCCCHHHHHHHHHHHHHccCCCEEEEe
Q 001091 677 ENILFGK------DMRQS----FYEEVLEGCALNQDIEMWADGDLSVVGER-GINLSGGQKQRIQLARAVYSNSDVYIFD 745 (1159)
Q Consensus 677 eNIlfG~------~~d~~----~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~-G~~LSGGQKQRIaLARAly~~a~I~LLD 745 (1159)
||+.|+. ..+++ +.+++++..+| ++..+|.||++ +..||||||||++||||+.++|+|++||
T Consensus 159 E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 159 ETLVFCSLLRLPKSLTKQEKILVAESVISELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 9999853 12222 23334443333 44568888875 6789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccc--ccccCEEEEEeCCeEEEecChHHHHh
Q 001091 746 DPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEF--LDAADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 746 Dp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~--l~~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
||||+||+.++.++.+ .++.+. +|+|+|++||+++. ...+|+|++|++|++++.|+.+++.+
T Consensus 232 EPtsgLD~~~~~~l~~-~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 232 EPTSGLDATAAYRLVL-TLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCCCcCHHHHHHHHH-HHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 9999999999888765 565554 58999999999984 46799999999999999999999875
No 285
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.98 E-value=8.5e-32 Score=315.44 Aligned_cols=219 Identities=26% Similarity=0.396 Sum_probs=176.2
Q ss_pred CccEEEeeeEEEeCCccccc---CCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----
Q 001091 588 DVAIDIEAGEYAWDAREENF---KKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---- 659 (1159)
Q Consensus 588 ~~~I~~~~~sf~w~~~~~~~---~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---- 659 (1159)
+..++++|++..|.....-. ......++| ||++++||.++|||+||||||||.++|+|..+|.+|+| ..+|
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i-~~~g~~~~ 356 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSI-IFDGQDLD 356 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EEeCcccc
Confidence 34578999999998532110 123456889 99999999999999999999999999999999999998 6655
Q ss_pred -----------EEEEEecCCCC---CCCcHHHHHhcC----CCCC-h---HHHHHHHHHhccchHHHhccCCCCccccCC
Q 001091 660 -----------KKAYVPQSSWI---QTGTIRENILFG----KDMR-Q---SFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1159)
Q Consensus 660 -----------~iayv~Q~pwi---~~gTIreNIlfG----~~~d-~---~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~ 717 (1159)
++-++.|+|.- ...||+++|.-- .... . ++..+.++..+|.+++ ....
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~----------l~ry 426 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEF----------LDRY 426 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHH----------HhcC
Confidence 46799999873 578999999632 1211 2 3455557778887541 2234
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccccc-cCEEEEEeC
Q 001091 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKD 794 (1159)
Q Consensus 718 G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~~-aD~Iivl~~ 794 (1159)
-..||||||||||||||+..+|+++++|||+||||+-+..++.+ .+..+.+ |-|.|+|||++.++++ ||+|.||++
T Consensus 427 P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~Vln-Ll~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~ 505 (539)
T COG1123 427 PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN-LLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYD 505 (539)
T ss_pred chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHH-HHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEEC
Confidence 45899999999999999999999999999999999999999876 4544443 7899999999999876 999999999
Q ss_pred CeEEEecChHHHHhhcchHHHHHH
Q 001091 795 GKIEQSGKYEDLIADQNSELVRQM 818 (1159)
Q Consensus 795 G~I~e~Gt~~eL~~~~~~~~~~l~ 818 (1159)
|+|+|.|+.+++.++...+|.+.+
T Consensus 506 G~iVE~G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 506 GRIVEEGPTEKVFENPQHPYTRKL 529 (539)
T ss_pred CeEEEeCCHHHHhcCCCChHHHHH
Confidence 999999999999885566666554
No 286
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.98 E-value=1.2e-31 Score=329.99 Aligned_cols=205 Identities=26% Similarity=0.373 Sum_probs=160.4
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEEC--CEEEEEec
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--GKKAYVPQ 666 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~--g~iayv~Q 666 (1159)
.|+++|++++|+.+ .++++| ||+|++|++++|+||+|||||||+++|.|+++|++|+| .++ ..++||+|
T Consensus 6 ~l~i~~l~~~y~~~-------~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i-~~~~~~~i~~v~Q 77 (556)
T PRK11819 6 IYTMNRVSKVVPPK-------KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEA-RPAPGIKVGYLPQ 77 (556)
T ss_pred EEEEeeEEEEeCCC-------CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecCCCEEEEEec
Confidence 58999999999622 468999 99999999999999999999999999999999999999 775 47999999
Q ss_pred CCCCCCC-cHHHHHhcCCC-C--------------C-h--------HHHHHHHHHh---c---cch----HHHhccCCCC
Q 001091 667 SSWIQTG-TIRENILFGKD-M--------------R-Q--------SFYEEVLEGC---A---LNQ----DIEMWADGDL 711 (1159)
Q Consensus 667 ~pwi~~g-TIreNIlfG~~-~--------------d-~--------~~y~~vl~ac---~---L~~----dl~~lp~Gd~ 711 (1159)
+|++++. |++||+.++.. + . + +++.++.+.+ . ..+ -++.+ |..
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 155 (556)
T PRK11819 78 EPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL--RCP 155 (556)
T ss_pred CCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC--CCC
Confidence 9998864 99999987631 0 0 0 0011111111 0 011 11111 111
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEE
Q 001091 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVL 790 (1159)
Q Consensus 712 T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Ii 790 (1159)
....+..+|||||||||+||||++++|+++||||||++||+.+.+.+. ++++.+ ++|+|+|||+++++.. ||+|+
T Consensus 156 -~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~-~~L~~~--~~tviiisHd~~~~~~~~d~i~ 231 (556)
T PRK11819 156 -PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLE-QFLHDY--PGTVVAVTHDRYFLDNVAGWIL 231 (556)
T ss_pred -cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHH-HHHHhC--CCeEEEEeCCHHHHHhhcCeEE
Confidence 123455689999999999999999999999999999999999988765 456654 3599999999999865 99999
Q ss_pred EEeCCeEE-EecChHHHHh
Q 001091 791 VMKDGKIE-QSGKYEDLIA 808 (1159)
Q Consensus 791 vl~~G~I~-e~Gt~~eL~~ 808 (1159)
+|++|+++ ..|+|++..+
T Consensus 232 ~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 232 ELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred EEeCCEEEEecCCHHHHHH
Confidence 99999986 7899998765
No 287
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.98 E-value=1.1e-31 Score=288.83 Aligned_cols=181 Identities=25% Similarity=0.279 Sum_probs=152.3
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++++|+. .+.++| |+++++||+++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 2 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v-~~~g~~~~~~~~~~ 72 (204)
T PRK13538 2 LEARNLACERDE--------RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEV-LWQGEPIRRQRDEY 72 (204)
T ss_pred eEEEEEEEEECC--------EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEcccchHHh
Confidence 688999999963 358999 99999999999999999999999999999999999998 7776
Q ss_pred --EEEEEecCCCCCC-CcHHHHHhcCCC----CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHH
Q 001091 660 --KKAYVPQSSWIQT-GTIRENILFGKD----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1159)
Q Consensus 660 --~iayv~Q~pwi~~-gTIreNIlfG~~----~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLA 732 (1159)
+++|++|++.++. .|++|||.++.+ .++++.+++++..+|.+..+ ....+||||||||++||
T Consensus 73 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~la 141 (204)
T PRK13538 73 HQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-----------VPVRQLSAGQQRRVALA 141 (204)
T ss_pred hhheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHHH
Confidence 3899999988765 699999987643 23456777888887764332 23568999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccccc-CEEEEE
Q 001091 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAA-DLVLVM 792 (1159)
Q Consensus 733 RAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~a-D~Iivl 792 (1159)
||+.++|++++|||||++||+.+.+.+. +.++.+. +++|+|++||+++++..+ ++++++
T Consensus 142 ~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 142 RLWLTRAPLWILDEPFTAIDKQGVARLE-ALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 9999999999999999999999988764 4565543 478999999999999764 566665
No 288
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.98 E-value=5.8e-32 Score=328.59 Aligned_cols=193 Identities=22% Similarity=0.311 Sum_probs=158.2
Q ss_pred eeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-------------
Q 001091 594 EAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------- 659 (1159)
Q Consensus 594 ~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g------------- 659 (1159)
+|++++|++ .++++| ||++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 2 ~nl~~~~~~--------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~ 72 (491)
T PRK10982 2 SNISKSFPG--------VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSI-LFQGKEIDFKSSKEALE 72 (491)
T ss_pred CceEEEeCC--------EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEE-EECCEECCCCCHHHHHh
Confidence 678888853 468999 99999999999999999999999999999999999999 7766
Q ss_pred -EEEEEecCCCCC-CCcHHHHHhcCCC-C-----ChH----HHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHH
Q 001091 660 -KKAYVPQSSWIQ-TGTIRENILFGKD-M-----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1159)
Q Consensus 660 -~iayv~Q~pwi~-~gTIreNIlfG~~-~-----d~~----~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQ 727 (1159)
.++|++|++.++ +.|++||+.++.. . +++ +.+++++.+++ .........+|||||||
T Consensus 73 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~q 141 (491)
T PRK10982 73 NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDI-----------DIDPRAKVATLSVSQMQ 141 (491)
T ss_pred CCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCC-----------CCCccCchhhCCHHHHH
Confidence 389999998765 5699999998642 1 221 22233333332 22234456789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeCCeEEEecChHH
Q 001091 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYED 805 (1159)
Q Consensus 728 RIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~e 805 (1159)
|++||||+..+|+++||||||++||+.+.+.+.+ .+..+. +|+|+|++||+++.+. .||+|++|++|+|++.|+.++
T Consensus 142 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 220 (491)
T PRK10982 142 MIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFT-IIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAG 220 (491)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhh
Confidence 9999999999999999999999999999887765 455543 5899999999999875 599999999999999999888
Q ss_pred HH
Q 001091 806 LI 807 (1159)
Q Consensus 806 L~ 807 (1159)
+.
T Consensus 221 ~~ 222 (491)
T PRK10982 221 LT 222 (491)
T ss_pred CC
Confidence 64
No 289
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.98 E-value=7.1e-32 Score=328.47 Aligned_cols=192 Identities=26% Similarity=0.358 Sum_probs=158.8
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|++++|++ .++++| ||++++|++++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I-~~~g~~i~~~~~~ 74 (501)
T PRK11288 4 YLSFDGIGKTFPG--------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSI-LIDGQEMRFASTT 74 (501)
T ss_pred eEEEeeeEEEECC--------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-EECCEECCCCCHH
Confidence 4899999999963 358999 99999999999999999999999999999999999999 7765
Q ss_pred -----EEEEEecCCCCCC-CcHHHHHhcCCC------CCh----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCH
Q 001091 660 -----KKAYVPQSSWIQT-GTIRENILFGKD------MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1159)
Q Consensus 660 -----~iayv~Q~pwi~~-gTIreNIlfG~~------~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSG 723 (1159)
.++|++|+|.++. .|++||+.++.. .+. ++.+++++.++|.+. ......+|||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSg 143 (501)
T PRK11288 75 AALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID-----------PDTPLKYLSI 143 (501)
T ss_pred HHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCC-----------cCCchhhCCH
Confidence 3899999998776 599999998642 121 233444555444321 2234568999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeCCeEEEec
Q 001091 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 724 GQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~G 801 (1159)
|||||++||||+..+|+++||||||++||+++.+.+.+ .+..+. +|+|+|+|||+++.+. .||+|++|++|+|+..+
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~ 222 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFR-VIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATF 222 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999887765 455443 4799999999999875 49999999999998766
Q ss_pred C
Q 001091 802 K 802 (1159)
Q Consensus 802 t 802 (1159)
+
T Consensus 223 ~ 223 (501)
T PRK11288 223 D 223 (501)
T ss_pred C
Confidence 5
No 290
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.98 E-value=8.2e-32 Score=287.62 Aligned_cols=178 Identities=20% Similarity=0.277 Sum_probs=148.7
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------E
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------K 660 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------~ 660 (1159)
++++|++++|+. . .+.+ |+++++||+++|+|++|||||||+++|.|+.+|++|+| .++| .
T Consensus 2 l~~~~l~~~~~~--------~-~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~i~~~~~~~ 71 (195)
T PRK13541 2 LSLHQLQFNIEQ--------K-NLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNI-YYKNCNINNIAKPY 71 (195)
T ss_pred eEEEEeeEEECC--------c-EEEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCcccChhhhhh
Confidence 678999999953 2 3557 99999999999999999999999999999999999999 8877 2
Q ss_pred EEEEecCCCC-CCCcHHHHHhcCCCC--ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHcc
Q 001091 661 KAYVPQSSWI-QTGTIRENILFGKDM--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1159)
Q Consensus 661 iayv~Q~pwi-~~gTIreNIlfG~~~--d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~ 737 (1159)
++|++|++.+ ++.|++|||.++... ++++.+++++.+++.+.. ..++.+||||||||++||||+++
T Consensus 72 ~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~~rl~la~al~~ 140 (195)
T PRK13541 72 CTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLL-----------DEKCYSLSSGMQKIVAIARLIAC 140 (195)
T ss_pred EEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhh-----------ccChhhCCHHHHHHHHHHHHHhc
Confidence 7999998754 789999999886532 344566677777765432 34567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhh-hcCCcEEEEEccCcccccccCEEE
Q 001091 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMG-LLSQKTVLYTTHQLEFLDAADLVL 790 (1159)
Q Consensus 738 ~a~I~LLDDp~SALD~~t~~~if~~~i~g-~l~~kTvIlVTH~l~~l~~aD~Ii 790 (1159)
+|+++||||||++||+.+.+.+. +.++. ..+++|+|++||+.+.++.||.|.
T Consensus 141 ~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 141 QSDLWLLDEVETNLSKENRDLLN-NLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 99999999999999999976654 45543 236899999999999999999774
No 291
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.98 E-value=7.1e-32 Score=330.09 Aligned_cols=197 Identities=24% Similarity=0.385 Sum_probs=163.0
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCc--cCCCCcEEEEC---------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVH--------- 658 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~--~~~~G~i~~v~--------- 658 (1159)
|+++|++++|+. .+++++ ||++++|++++|+||+|||||||+++|.|+. +|++|+| .++
T Consensus 1 l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i-~~~~~~~~~~~~ 71 (520)
T TIGR03269 1 IEVKNLTKKFDG--------KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRI-IYHVALCEKCGY 71 (520)
T ss_pred CEEEEEEEEECC--------eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEE-EEeccccccccc
Confidence 478999999953 368999 9999999999999999999999999999996 7999998 664
Q ss_pred --------------C-----------------------EEEEEecC-CCCCC-CcHHHHHhcCCC---CC----hHHHHH
Q 001091 659 --------------G-----------------------KKAYVPQS-SWIQT-GTIRENILFGKD---MR----QSFYEE 692 (1159)
Q Consensus 659 --------------g-----------------------~iayv~Q~-pwi~~-gTIreNIlfG~~---~d----~~~y~~ 692 (1159)
| .++|++|+ +.++. .|++||+.|+.. ++ +++..+
T Consensus 72 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 151 (520)
T TIGR03269 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVD 151 (520)
T ss_pred cccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1 37999997 55654 699999987532 22 234556
Q ss_pred HHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CC
Q 001091 693 VLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQ 770 (1159)
Q Consensus 693 vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~ 770 (1159)
+++.++|.+.. .....+|||||||||+||||+..+|+++||||||++||+++.+.+.+ .+..+. .|
T Consensus 152 ~l~~~gl~~~~-----------~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~~g 219 (520)
T TIGR03269 152 LIEMVQLSHRI-----------THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHN-ALEEAVKASG 219 (520)
T ss_pred HHHHcCChhhh-----------hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHH-HHHHHHHhcC
Confidence 66666664332 23456899999999999999999999999999999999999887754 565554 37
Q ss_pred cEEEEEccCccccc-ccCEEEEEeCCeEEEecChHHHHh
Q 001091 771 KTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 771 kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
+|||+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 220 ~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 220 ISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred cEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 99999999999986 599999999999999999998866
No 292
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.98 E-value=7.7e-32 Score=327.53 Aligned_cols=196 Identities=23% Similarity=0.327 Sum_probs=164.8
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|++++|+. .++|++ ||++++|++++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 4 l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i-~~~~~~~~~~~~~~ 74 (490)
T PRK10938 4 LQISQGTFRLSD--------TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGER-QSQFSHITRLSFEQ 74 (490)
T ss_pred EEEEeEEEEcCC--------eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceE-EECCcccccCCHHH
Confidence 789999999964 348999 99999999999999999999999999999999999998 7654
Q ss_pred ---EEEEEecCCCC---------CCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHH
Q 001091 660 ---KKAYVPQSSWI---------QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1159)
Q Consensus 660 ---~iayv~Q~pwi---------~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQ 727 (1159)
.++|++|++-+ +..|++||+.++.+ ++++.+++++..+|.+.. .....+|||||||
T Consensus 75 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~q 142 (490)
T PRK10938 75 LQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALL-----------DRRFKYLSTGETR 142 (490)
T ss_pred HHHHhceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhhh-----------hCCcccCCHHHHH
Confidence 27899998643 24699999987632 345666777777665332 2345689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHH
Q 001091 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1159)
Q Consensus 728 RIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~e 805 (1159)
|++||||+..+|+++||||||++||+...+.+.+ .+..+. +|+|+|++||+++.+.. ||+|++|++|+++..|+.++
T Consensus 143 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 221 (490)
T PRK10938 143 KTLLCQALMSEPDLLILDEPFDGLDVASRQQLAE-LLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREE 221 (490)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999887755 455543 47899999999998754 99999999999999999998
Q ss_pred HHh
Q 001091 806 LIA 808 (1159)
Q Consensus 806 L~~ 808 (1159)
+.+
T Consensus 222 ~~~ 224 (490)
T PRK10938 222 ILQ 224 (490)
T ss_pred Hhc
Confidence 765
No 293
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=3.1e-32 Score=274.35 Aligned_cols=194 Identities=27% Similarity=0.455 Sum_probs=157.4
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE--------E
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------K 661 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~--------i 661 (1159)
..+++.+.+|+.. +.+.++| |++|.+||++++.|||||||||||+.+.|+++|..|+| .++|+ -
T Consensus 4 l~~~~~sl~y~g~------~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i-~l~~r~i~gPgaer 76 (259)
T COG4525 4 LNVSHLSLSYEGK------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSI-QLNGRRIEGPGAER 76 (259)
T ss_pred eehhheEEecCCc------chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceE-EECCEeccCCCccc
Confidence 3456788899865 3679999 99999999999999999999999999999999999999 99885 5
Q ss_pred EEEecCCCC-CCCcHHHHHhcCCCC---Ch----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHH
Q 001091 662 AYVPQSSWI-QTGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1159)
Q Consensus 662 ayv~Q~pwi-~~gTIreNIlfG~~~---d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLAR 733 (1159)
|.|.|++-+ +--|+.||+.||... ++ ++-.+.+...+|++. ++ ..-..||||||||+.|||
T Consensus 77 gvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~-------~~----~~i~qLSGGmrQRvGiAR 145 (259)
T COG4525 77 GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGA-------EH----KYIWQLSGGMRQRVGIAR 145 (259)
T ss_pred eeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccc-------cc----cceEeecchHHHHHHHHH
Confidence 999998755 457999999999643 22 233344444444321 11 224589999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccc-ccccCEEEEEe--CCeEEEecCh
Q 001091 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEF-LDAADLVLVMK--DGKIEQSGKY 803 (1159)
Q Consensus 734 Aly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~-l~~aD~Iivl~--~G~I~e~Gt~ 803 (1159)
|+..+|+.++|||||+|||+-|.+++ |+.+..+- .||-+++|||.++. +--|++++||+ .|+|++.=+.
T Consensus 146 ALa~eP~~LlLDEPfgAlDa~tRe~m-QelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 146 ALAVEPQLLLLDEPFGALDALTREQM-QELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HhhcCcceEeecCchhhHHHHHHHHH-HHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 99999999999999999999998876 66554433 59999999999987 56699999997 7899986443
No 294
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.98 E-value=7.4e-32 Score=328.53 Aligned_cols=197 Identities=21% Similarity=0.364 Sum_probs=159.9
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC--CCCcEEEECC--------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHG-------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~--~~G~i~~v~g-------- 659 (1159)
++++|++++|++ .+++++ ||++++|++++|+||+|||||||+++|.|+++| .+|+| .++|
T Consensus 2 l~i~~l~~~~~~--------~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i-~~~g~~~~~~~~ 72 (500)
T TIGR02633 2 LEMKGIVKTFGG--------VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI-YWSGSPLKASNI 72 (500)
T ss_pred EEEEeEEEEeCC--------eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE-EECCEECCCCCH
Confidence 689999999963 368999 999999999999999999999999999999987 79999 7765
Q ss_pred ------EEEEEecCCCCCC-CcHHHHHhcCCCC-------Ch----HHHHHHHHHhccchHHHhccCCCCccccCCCCCC
Q 001091 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM-------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1159)
Q Consensus 660 ------~iayv~Q~pwi~~-gTIreNIlfG~~~-------d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~L 721 (1159)
.++||+|+|.++. .|++||+.++..+ +. ++.+++++.+++.+.. ++ ....+|
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~----~~~~~L 142 (500)
T TIGR02633 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN------VT----RPVGDY 142 (500)
T ss_pred HHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc------cc----CchhhC
Confidence 3899999987765 5999999987432 11 1233344444332111 11 224579
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeEEE
Q 001091 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1159)
Q Consensus 722 SGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e 799 (1159)
|||||||++||||++++|+++||||||++||+.+.+.+.+ .++.+. +|+|+|+|||+++.+.. ||+|++|++|++++
T Consensus 143 SgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~ 221 (500)
T TIGR02633 143 GGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLD-IIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVA 221 (500)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEee
Confidence 9999999999999999999999999999999999887755 555543 47899999999999865 99999999999999
Q ss_pred ecChHHHH
Q 001091 800 SGKYEDLI 807 (1159)
Q Consensus 800 ~Gt~~eL~ 807 (1159)
.|+.++..
T Consensus 222 ~~~~~~~~ 229 (500)
T TIGR02633 222 TKDMSTMS 229 (500)
T ss_pred ecCcccCC
Confidence 99877653
No 295
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.98 E-value=4.4e-32 Score=285.96 Aligned_cols=176 Identities=30% Similarity=0.454 Sum_probs=139.5
Q ss_pred EEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCC
Q 001091 592 DIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWI 670 (1159)
Q Consensus 592 ~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi 670 (1159)
+++|+++.|+. .+.+++ |+++++||+++|+||+|||||||+++|.|+++|.+|+| .++|.-- .+ .
T Consensus 1 ~~~~l~~~~~~--------~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v-~~~g~~~--~~---~ 66 (180)
T cd03214 1 EVENLSVGYGG--------RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI-LLDGKDL--AS---L 66 (180)
T ss_pred CeeEEEEEECC--------eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEC--Cc---C
Confidence 46899999963 358999 99999999999999999999999999999999999999 8887410 00 0
Q ss_pred CCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 001091 671 QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSA 750 (1159)
Q Consensus 671 ~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SA 750 (1159)
-...++..|.+-. ++++.+++.+++. ..+.+||||||||++||||+.++|+++||||||++
T Consensus 67 ~~~~~~~~i~~~~--------q~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~ 127 (180)
T cd03214 67 SPKELARKIAYVP--------QALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEPPILLLDEPTSH 127 (180)
T ss_pred CHHHHHHHHhHHH--------HHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 0011222332211 1667777765433 34678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccc-cccCEEEEEeCCeEEEec
Q 001091 751 VDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 751 LD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~G 801 (1159)
||+++.+.+. +.+..+.+ ++|+|++||+++.+ ..||++++|++|++.+.|
T Consensus 128 LD~~~~~~~~-~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 128 LDIAHQIELL-ELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred CCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999977654 56666544 78999999999997 559999999999998754
No 296
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.98 E-value=1.2e-31 Score=288.91 Aligned_cols=182 Identities=25% Similarity=0.296 Sum_probs=152.1
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|+++.|+. ..++++ ||+|++||+++|+|++|||||||+++|.|..+|.+|+| .++|
T Consensus 3 l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 73 (207)
T PRK13539 3 LEGEDLACVRGG--------RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTI-KLDGGDIDDPDVAE 73 (207)
T ss_pred EEEEeEEEEECC--------eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEeCcchhhHh
Confidence 789999999963 358999 99999999999999999999999999999999999999 8877
Q ss_pred EEEEEecCCCC-CCCcHHHHHhcCCC---CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 001091 660 KKAYVPQSSWI-QTGTIRENILFGKD---MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1159)
Q Consensus 660 ~iayv~Q~pwi-~~gTIreNIlfG~~---~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAl 735 (1159)
.++|++|++-+ ++.|++||+.+... .++++.+++++..+|.++.+ . ...+||||||||++||||+
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~----------~~~~LS~G~~qrl~la~al 142 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-L----------PFGYLSAGQKRRVALARLL 142 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-C----------ChhhcCHHHHHHHHHHHHH
Confidence 37999988665 57899999987543 23455677777777754322 1 2347999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCcccccccCEEEEEeC
Q 001091 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAADLVLVMKD 794 (1159)
Q Consensus 736 y~~a~I~LLDDp~SALD~~t~~~if~~~i~g~-l~~kTvIlVTH~l~~l~~aD~Iivl~~ 794 (1159)
.++|+++||||||++||+.+.+.+. +.+..+ .+++|+|++||+++.++. |+++.++.
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 143 VSNRPIWILDEPTAALDAAAVALFA-ELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999988765 456544 358999999999999998 99988854
No 297
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.98 E-value=1e-31 Score=278.50 Aligned_cols=159 Identities=28% Similarity=0.424 Sum_probs=127.6
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCC
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW 669 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pw 669 (1159)
++++|++++|+. .+++++ |+++++||.++|+||+|||||||+++|.|+++|.+|+| .++|.- +.+
T Consensus 1 l~~~~l~~~~~~--------~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v-~~~g~~--~~~--- 66 (163)
T cd03216 1 LELRGITKRFGG--------VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI-LVDGKE--VSF--- 66 (163)
T ss_pred CEEEEEEEEECC--------eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEE--CCc---
Confidence 478999999963 368999 99999999999999999999999999999999999999 887731 000
Q ss_pred CCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q 001091 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (1159)
Q Consensus 670 i~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~S 749 (1159)
.+.++ .++ ..+...++ ||||||||++||||++++|+++||||||+
T Consensus 67 ---~~~~~-----------~~~---------~~i~~~~q------------LS~G~~qrl~laral~~~p~illlDEP~~ 111 (163)
T cd03216 67 ---ASPRD-----------ARR---------AGIAMVYQ------------LSVGERQMVEIARALARNARLLILDEPTA 111 (163)
T ss_pred ---CCHHH-----------HHh---------cCeEEEEe------------cCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 00000 000 00001111 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeEEE
Q 001091 750 AVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1159)
Q Consensus 750 ALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e 799 (1159)
+||+.+.+++.+ .++.+. +++|+|++||+++.++. ||++++|++|++++
T Consensus 112 ~LD~~~~~~l~~-~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 112 ALTPAEVERLFK-VIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999887654 565553 48999999999998765 99999999999975
No 298
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2.4e-31 Score=325.94 Aligned_cols=195 Identities=19% Similarity=0.344 Sum_probs=158.3
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--EEEEEecC
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQS 667 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--~iayv~Q~ 667 (1159)
|+++|++++|++ .+++++ ||+|++|++++|+||+|||||||+++|.|+++|.+|+| .++| +++|++|+
T Consensus 2 l~i~~ls~~~~~--------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i-~~~~~~~i~~~~q~ 72 (530)
T PRK15064 2 LSTANITMQFGA--------KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNV-SLDPNERLGKLRQD 72 (530)
T ss_pred EEEEEEEEEeCC--------cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecCCCEEEEEecc
Confidence 689999999963 468999 99999999999999999999999999999999999999 8875 69999999
Q ss_pred CCCCC-CcHHHHHhcCCC-C-C-------------------------------------hHHHHHHHHHhccchHHHhcc
Q 001091 668 SWIQT-GTIRENILFGKD-M-R-------------------------------------QSFYEEVLEGCALNQDIEMWA 707 (1159)
Q Consensus 668 pwi~~-gTIreNIlfG~~-~-d-------------------------------------~~~y~~vl~ac~L~~dl~~lp 707 (1159)
+-++. .|++||+.++.. + . +++.+++++..+|
T Consensus 73 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-------- 144 (530)
T PRK15064 73 QFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGI-------- 144 (530)
T ss_pred CCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC--------
Confidence 87654 599999987631 0 0 0111122222222
Q ss_pred CCCCccc-cCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-
Q 001091 708 DGDLSVV-GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA- 785 (1159)
Q Consensus 708 ~Gd~T~I-Ge~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~- 785 (1159)
.... .....+||||||||++||||+..+|+++||||||++||++..+.+.+ .+.. .++|+|+|||+++.+..
T Consensus 145 ---~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~--~~~tiiivsHd~~~~~~~ 218 (530)
T PRK15064 145 ---PEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLED-VLNE--RNSTMIIISHDRHFLNSV 218 (530)
T ss_pred ---ChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHH-HHHh--CCCeEEEEeCCHHHHHhh
Confidence 1111 23457899999999999999999999999999999999999877654 4543 47999999999998854
Q ss_pred cCEEEEEeCCeE-EEecChHHHHh
Q 001091 786 ADLVLVMKDGKI-EQSGKYEDLIA 808 (1159)
Q Consensus 786 aD~Iivl~~G~I-~e~Gt~~eL~~ 808 (1159)
||+|++|++|++ ++.|++++.++
T Consensus 219 ~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 219 CTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred cceEEEEeCCEEEEecCCHHHHHH
Confidence 999999999999 47899998875
No 299
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.97 E-value=1.3e-31 Score=328.40 Aligned_cols=206 Identities=24% Similarity=0.362 Sum_probs=164.0
Q ss_pred cEEEeeeEEEeCCcccc---cCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC------
Q 001091 590 AIDIEAGEYAWDAREEN---FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------ 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~---~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g------ 659 (1159)
.++++|+++.|+..... .....+++++ ||++++|++++|+||+|||||||+++|.|.++ .+|+| .++|
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i-~~~g~~i~~~ 352 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEI-WFDGQPLHNL 352 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEE-EECCEEcccc
Confidence 58999999999631000 0012468999 99999999999999999999999999999985 89999 7765
Q ss_pred ----------EEEEEecCC--CCC-CCcHHHHHhcCCC-----CC----hHHHHHHHHHhccchHHHhccCCCCccccCC
Q 001091 660 ----------KKAYVPQSS--WIQ-TGTIRENILFGKD-----MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1159)
Q Consensus 660 ----------~iayv~Q~p--wi~-~gTIreNIlfG~~-----~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~ 717 (1159)
+++|++|+| .++ +.|++||+.++.. .+ +++.++.++..+|.++. ....
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~ 422 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPET----------RHRY 422 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHH----------HhcC
Confidence 389999998 244 5699999987521 12 12344555555554221 1234
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEeC
Q 001091 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKD 794 (1159)
Q Consensus 718 G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~ 794 (1159)
..+||||||||++||||+..+|+++||||||++||+++.+.+.+ .++.+. .|+|+|+|||+++.+. .||+|++|++
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~ 501 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILA-LLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQ 501 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHH-HHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 56899999999999999999999999999999999999887765 566554 3799999999999875 5999999999
Q ss_pred CeEEEecChHHHHh
Q 001091 795 GKIEQSGKYEDLIA 808 (1159)
Q Consensus 795 G~I~e~Gt~~eL~~ 808 (1159)
|+|++.|+.+++.+
T Consensus 502 G~i~~~~~~~~~~~ 515 (529)
T PRK15134 502 GEVVEQGDCERVFA 515 (529)
T ss_pred CEEEEEcCHHHHhc
Confidence 99999999999875
No 300
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.97 E-value=1.2e-31 Score=328.49 Aligned_cols=205 Identities=27% Similarity=0.404 Sum_probs=164.8
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC-----CCCcEEEECC----
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~-----~~G~i~~v~g---- 659 (1159)
.++++|++++|+... ...+++++ ||++++||+++|+||+|||||||+++|.|.++| ++|+| .++|
T Consensus 5 ~l~~~~l~~~~~~~~----~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~i~ 79 (529)
T PRK15134 5 LLAIENLSVAFRQQQ----TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDI-RFHGESLL 79 (529)
T ss_pred eEEEeceEEEecCCC----CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEE-EECCEecc
Confidence 489999999996420 12478999 999999999999999999999999999999986 79998 6654
Q ss_pred -------------EEEEEecCCC--C-CCCcHHHHHhcCC----CCC----hHHHHHHHHHhccchHHHhccCCCCcccc
Q 001091 660 -------------KKAYVPQSSW--I-QTGTIRENILFGK----DMR----QSFYEEVLEGCALNQDIEMWADGDLSVVG 715 (1159)
Q Consensus 660 -------------~iayv~Q~pw--i-~~gTIreNIlfG~----~~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IG 715 (1159)
.++|++|+|. + ...|++||+.++. ..+ +++.+++++.++|.+... ...
T Consensus 80 ~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~ 151 (529)
T PRK15134 80 HASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLT 151 (529)
T ss_pred cCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHh
Confidence 4899999984 3 3469999987431 111 234456666666642111 112
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEE
Q 001091 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVM 792 (1159)
Q Consensus 716 e~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl 792 (1159)
.+..+||||||||++||||++.+|+++|||||||+||+++.+.+.+ .++.+. .|+|+|+|||+++.+. .||+|++|
T Consensus 152 ~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l 230 (529)
T PRK15134 152 DYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQ-LLRELQQELNMGLLFITHNLSIVRKLADRVAVM 230 (529)
T ss_pred hCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHH-HHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEE
Confidence 4456899999999999999999999999999999999999887754 565543 3799999999999876 59999999
Q ss_pred eCCeEEEecChHHHHh
Q 001091 793 KDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 793 ~~G~I~e~Gt~~eL~~ 808 (1159)
++|++++.|+.+++.+
T Consensus 231 ~~G~i~~~g~~~~~~~ 246 (529)
T PRK15134 231 QNGRCVEQNRAATLFS 246 (529)
T ss_pred ECCEEEEeCCHHHHhh
Confidence 9999999999999875
No 301
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.97 E-value=1.4e-31 Score=327.60 Aligned_cols=208 Identities=19% Similarity=0.331 Sum_probs=164.7
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEEC-C--------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH-G-------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~-g-------- 659 (1159)
.++++|++++|++.. ....++++| ||++++|++++|+||+|||||||+++|.|..+|.+|+| .++ |
T Consensus 279 ~l~~~~l~~~~~~~~---~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i-~~~~g~~~~~~~~ 354 (520)
T TIGR03269 279 IIKVRNVSKRYISVD---RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEV-NVRVGDEWVDMTK 354 (520)
T ss_pred eEEEeccEEEeccCC---CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EEecCCccccccc
Confidence 599999999996310 012468999 99999999999999999999999999999999999999 773 2
Q ss_pred -----------EEEEEecCCCCCC-CcHHHHHhcCCC--CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCC
Q 001091 660 -----------KKAYVPQSSWIQT-GTIRENILFGKD--MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1159)
Q Consensus 660 -----------~iayv~Q~pwi~~-gTIreNIlfG~~--~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~L 721 (1159)
+++|++|++-++. .|++||+.++.. .+ +++.++.++.++|...- .+.........|
T Consensus 355 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~~L 428 (520)
T TIGR03269 355 PGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK------AEEILDKYPDEL 428 (520)
T ss_pred cchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc------chhhhhCChhhC
Confidence 3899999987765 699999986321 11 12334455555553200 000123445689
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEeCCeEE
Q 001091 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1159)
Q Consensus 722 SGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~ 798 (1159)
|||||||++||||+..+|+++||||||++||+++.+.+.+ .++.+. .|+|+|+|||+++.+. .||+|++|++|+++
T Consensus 429 SgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 507 (520)
T TIGR03269 429 SEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTH-SILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIV 507 (520)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999877654 565554 3799999999999875 59999999999999
Q ss_pred EecChHHHHh
Q 001091 799 QSGKYEDLIA 808 (1159)
Q Consensus 799 e~Gt~~eL~~ 808 (1159)
+.|+.+++.+
T Consensus 508 ~~g~~~~~~~ 517 (520)
T TIGR03269 508 KIGDPEEIVE 517 (520)
T ss_pred EECCHHHHHh
Confidence 9999888765
No 302
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1e-31 Score=327.39 Aligned_cols=201 Identities=21% Similarity=0.333 Sum_probs=161.6
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc-CCCCcEEEECC--------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-RISGAAIKVHG-------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~-~~~G~i~~v~g-------- 659 (1159)
.++++|+++.|+.. ...++++| ||++++||+++|+||+|||||||+++|.|.++ |.+|+| .++|
T Consensus 259 ~l~~~~l~~~~~~~-----~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i-~~~g~~~~~~~~ 332 (506)
T PRK13549 259 ILEVRNLTAWDPVN-----PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEI-FIDGKPVKIRNP 332 (506)
T ss_pred eEEEecCccccccc-----cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEE-EECCEECCCCCH
Confidence 58999999998531 12468999 99999999999999999999999999999998 599999 7765
Q ss_pred ------EEEEEecCC---CCC-CCcHHHHHhcCCC--C------Ch----HHHHHHHHHhccchHHHhccCCCCccccCC
Q 001091 660 ------KKAYVPQSS---WIQ-TGTIRENILFGKD--M------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1159)
Q Consensus 660 ------~iayv~Q~p---wi~-~gTIreNIlfG~~--~------d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~ 717 (1159)
.++|++|+| .++ +.|+.||+.++.. + ++ ++.++.++.+++..+ .....
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~ 402 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTA----------SPELA 402 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCC----------Ccccc
Confidence 289999996 354 5799999987531 1 21 233444444444210 12344
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeCC
Q 001091 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDG 795 (1159)
Q Consensus 718 G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G 795 (1159)
..+||||||||++||||+..+|+++||||||++||+.+.+.+.+ .++.+. +|+|+|++||+++.+. .||++++|++|
T Consensus 403 ~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G 481 (506)
T PRK13549 403 IARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYK-LINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEG 481 (506)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHH-HHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 56899999999999999999999999999999999999877654 555543 5899999999999875 59999999999
Q ss_pred eEEEecChHHHH
Q 001091 796 KIEQSGKYEDLI 807 (1159)
Q Consensus 796 ~I~e~Gt~~eL~ 807 (1159)
+|+..|+.+++.
T Consensus 482 ~i~~~~~~~~~~ 493 (506)
T PRK13549 482 KLKGDLINHNLT 493 (506)
T ss_pred EEEEEeccccCC
Confidence 999999888763
No 303
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.97 E-value=1.3e-31 Score=289.77 Aligned_cols=184 Identities=19% Similarity=0.186 Sum_probs=148.4
Q ss_pred cccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEE-ECCEEEEEecCCCCCCC-cHHHHHhcCCC---CC
Q 001091 613 KLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK-VHGKKAYVPQSSWIQTG-TIRENILFGKD---MR 686 (1159)
Q Consensus 613 ~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~-v~g~iayv~Q~pwi~~g-TIreNIlfG~~---~d 686 (1159)
+++| |++|++|++++|+||+|||||||+++|+|+++|.+|+| . ++|....+.|++.++.. |++|||.+... .+
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i-~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~ 80 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDF-IGLRGDALPLGANSFILPGLTGEENARMMASLYGLD 80 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCE-EEecCceeccccccccCCcCcHHHHHHHHHHHcCCC
Confidence 5788 99999999999999999999999999999999999998 6 77765556777888765 99999987532 33
Q ss_pred hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q 001091 687 QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG 766 (1159)
Q Consensus 687 ~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g 766 (1159)
.++..+.+. +...++...++.+ ..||||||||++||||+..+|+++|||||++++|+++.+.+.+. +..
T Consensus 81 ~~~~~~~~~------~~~~l~~~~~~~~----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~-l~~ 149 (213)
T PRK15177 81 GDEFSHFCY------QLTQLEQCYTDRV----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAA-LAC 149 (213)
T ss_pred HHHHHHHHH------HHhChhHHhhchH----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHH-HHH
Confidence 333322221 1222333334433 45999999999999999999999999999999999998776553 544
Q ss_pred hcCCcEEEEEccCccccc-ccCEEEEEeCCeEEEecChHHHHh
Q 001091 767 LLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 767 ~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
.++++|+|++||+++.+. .||+|++|++|++++.|+-++..+
T Consensus 150 ~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 150 QLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred HhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 456789999999999985 599999999999999999888765
No 304
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.97 E-value=2.1e-31 Score=290.67 Aligned_cols=189 Identities=21% Similarity=0.272 Sum_probs=148.1
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEEC--C--------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--G-------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~--g-------- 659 (1159)
++++|+++.|+.... .+...+.++| ||++++||.++|+|++|||||||+++|.|.++|.+|+| .++ |
T Consensus 2 l~~~~l~~~~~~~~~-~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~~~g~~~~~~~~ 79 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ-GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRI-LVRHEGAWVDLAQA 79 (224)
T ss_pred EEEEeeEEEeecccC-CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE-EEecCCCccchhhc
Confidence 688999999964200 0012468999 99999999999999999999999999999999999998 775 2
Q ss_pred -----------EEEEEecCCCCCC-CcHHHHHhcCC---CCCh----HHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 -----------KKAYVPQSSWIQT-GTIRENILFGK---DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 -----------~iayv~Q~pwi~~-gTIreNIlfG~---~~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.++|++|+|.++. .|++|||.++. ..+. ++.+++++..++.++.. ...+.+
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~ 149 (224)
T TIGR02324 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW----------HLPPAT 149 (224)
T ss_pred CHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh----------hCCccc
Confidence 3799999998765 59999997642 1221 23334444444432221 234678
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVM 792 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl 792 (1159)
||||||||++||||+.++|+++||||||++||+++.+.+.+ .++.+. +++|+|++||+.+.+. .||+|+.+
T Consensus 150 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVE-LIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 99999999999999999999999999999999999887654 565553 4789999999999885 69999876
No 305
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.97 E-value=1.5e-31 Score=306.94 Aligned_cols=169 Identities=30% Similarity=0.398 Sum_probs=141.9
Q ss_pred EEcCCCCChhHHHHHHhCCccCCCCcEEEECC-----------EEEEEecCCCCCC-CcHHHHHhcCCC---CC----hH
Q 001091 628 VCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------KKAYVPQSSWIQT-GTIRENILFGKD---MR----QS 688 (1159)
Q Consensus 628 IvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-----------~iayv~Q~pwi~~-gTIreNIlfG~~---~d----~~ 688 (1159)
|+||+|||||||+++|.|+++|.+|+| .++| .++|++|++.++. .|++|||.|+.. .+ ++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I-~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSI-MLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEE-EECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 589999999999999999999999999 8876 3899999999886 599999998743 22 23
Q ss_pred HHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc
Q 001091 689 FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768 (1159)
Q Consensus 689 ~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l 768 (1159)
+.+++++.++|.+..+ ....+||||||||++||||+.++|+++|||||||+||+++.+.+.+ .+..+.
T Consensus 80 ~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~-~l~~l~ 147 (325)
T TIGR01187 80 RVLEALRLVQLEEFAD-----------RKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQL-ELKTIQ 147 (325)
T ss_pred HHHHHHHHcCCcchhc-----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHH-HHHHHH
Confidence 4556666666654333 3346899999999999999999999999999999999999877654 565554
Q ss_pred --CCcEEEEEccCccccc-ccCEEEEEeCCeEEEecChHHHHhh
Q 001091 769 --SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIAD 809 (1159)
Q Consensus 769 --~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~~ 809 (1159)
.|+|+|+|||+++.+. .||+|++|++|+|++.|+++|+.++
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 3799999999999865 5999999999999999999999873
No 306
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.5e-31 Score=271.39 Aligned_cols=198 Identities=22% Similarity=0.349 Sum_probs=163.6
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
+++.+.+-+|++. ...++| +|+++.||.++|.|++|+||||+|+.|.+++.|++|+| .++|
T Consensus 2 l~v~~l~K~y~~~-------v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v-~idg~d~~~~p~~v 73 (245)
T COG4555 2 LEVTDLTKSYGSK-------VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV-TIDGVDTVRDPSFV 73 (245)
T ss_pred eeeeehhhhccCH-------HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceE-EEeecccccChHHH
Confidence 5677788888642 446899 99999999999999999999999999999999999999 8876
Q ss_pred --EEEEEecC-CCCCCCcHHHHHhcC-CCCC------hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHH
Q 001091 660 --KKAYVPQS-SWIQTGTIRENILFG-KDMR------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1159)
Q Consensus 660 --~iayv~Q~-pwi~~gTIreNIlfG-~~~d------~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRI 729 (1159)
+|+.++-+ +.--..|.||||.|- .-++ +.+.+++.+.-+|.+-+ ..|-.++|-|+||||
T Consensus 74 rr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~-----------~rRv~~~S~G~kqkV 142 (245)
T COG4555 74 RRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYL-----------DRRVGEFSTGMKQKV 142 (245)
T ss_pred hhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHH-----------HHHHhhhchhhHHHH
Confidence 46766654 444567999999853 3222 34555666655554433 245567999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEccCccccc-ccCEEEEEeCCeEEEecChHHHH
Q 001091 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLI 807 (1159)
Q Consensus 730 aLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~-~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~ 807 (1159)
+||||+.+||++|+||||+|+||..+.+ .|++.+..+.. ||+||+.||-++.++ -||+|+++.+|+++..|+.+++.
T Consensus 143 ~iARAlvh~P~i~vlDEP~sGLDi~~~r-~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~ 221 (245)
T COG4555 143 AIARALVHDPSILVLDEPTSGLDIRTRR-KFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALD 221 (245)
T ss_pred HHHHHHhcCCCeEEEcCCCCCccHHHHH-HHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHH
Confidence 9999999999999999999999998855 66777766654 999999999999998 59999999999999999999987
Q ss_pred h
Q 001091 808 A 808 (1159)
Q Consensus 808 ~ 808 (1159)
+
T Consensus 222 ~ 222 (245)
T COG4555 222 A 222 (245)
T ss_pred H
Confidence 6
No 307
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.97 E-value=4.1e-31 Score=282.92 Aligned_cols=178 Identities=25% Similarity=0.283 Sum_probs=144.7
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|+++.|+. .+.+++ ||++++|+.++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (198)
T TIGR01189 1 LAARNLACSRGE--------RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEV-RWNGTALAEQRDEP 71 (198)
T ss_pred CEEEEEEEEECC--------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEE-EECCEEcccchHHh
Confidence 468899999963 368999 99999999999999999999999999999999999998 7776
Q ss_pred --EEEEEecCCCCCC-CcHHHHHhcCCCC---ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHH
Q 001091 660 --KKAYVPQSSWIQT-GTIRENILFGKDM---RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1159)
Q Consensus 660 --~iayv~Q~pwi~~-gTIreNIlfG~~~---d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLAR 733 (1159)
.++|++|++.++. .|++||+.++.+. ++++.+++++..++.+.++ ....+||||||||++|||
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~ 140 (198)
T TIGR01189 72 HRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-----------LPAAQLSAGQQRRLALAR 140 (198)
T ss_pred hhheEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc-----------CChhhcCHHHHHHHHHHH
Confidence 3789999998875 7999999875432 2335666777777654332 234689999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCcccccccCEEE
Q 001091 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAADLVL 790 (1159)
Q Consensus 734 Aly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~-l~~kTvIlVTH~l~~l~~aD~Ii 790 (1159)
|++++|++++|||||++||+.+.+.+ .+.+..+ .+++|+|++||+...+.. |+++
T Consensus 141 al~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~~tii~~sH~~~~~~~-~~~~ 196 (198)
T TIGR01189 141 LWLSRAPLWILDEPTTALDKAGVALL-AGLLRAHLARGGIVLLTTHQDLGLVE-AREL 196 (198)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHH-HHHHHHHHhCCCEEEEEEcccccccc-eEEe
Confidence 99999999999999999999986655 5566654 358899999998854433 4443
No 308
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7.7e-31 Score=321.50 Aligned_cols=198 Identities=22% Similarity=0.349 Sum_probs=166.1
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--EEEEEe
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVP 665 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--~iayv~ 665 (1159)
..++++|++++|++ .+++++ ||+|++|++++|+||+|||||||+++|.|.++|.+|+| .++| +++|++
T Consensus 318 ~~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i-~~~~~~~i~~~~ 388 (530)
T PRK15064 318 NALEVENLTKGFDN--------GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV-KWSENANIGYYA 388 (530)
T ss_pred ceEEEEeeEEeeCC--------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCceEEEEEc
Confidence 46999999999963 358999 99999999999999999999999999999999999999 8876 799999
Q ss_pred cCCC--CC-CCcHHHHHhcCC--CCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 001091 666 QSSW--IQ-TGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1159)
Q Consensus 666 Q~pw--i~-~gTIreNIlfG~--~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~ 740 (1159)
|++. ++ +.|++||+.+.. ..++++.+++++..++..+. ......+||||||||++||||+.++|+
T Consensus 389 q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~qrv~la~al~~~p~ 458 (530)
T PRK15064 389 QDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDD----------IKKSVKVLSGGEKGRMLFGKLMMQKPN 458 (530)
T ss_pred ccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhH----------hcCcccccCHHHHHHHHHHHHHhcCCC
Confidence 9974 33 479999996522 22345566677777664221 224567899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeCCeEE-EecChHHHHh
Q 001091 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE-QSGKYEDLIA 808 (1159)
Q Consensus 741 I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~-e~Gt~~eL~~ 808 (1159)
++||||||++||+.+.+.+.+ .++.+ +.|+|+|||+.+++.. ||+|++|++|+++ +.|+++++++
T Consensus 459 lllLDEPt~~LD~~~~~~l~~-~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 459 VLVMDEPTNHMDMESIESLNM-ALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred EEEEcCCCCCCCHHHHHHHHH-HHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 999999999999999887755 45554 4599999999998765 9999999999998 8899998876
No 309
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.97 E-value=3.3e-31 Score=281.80 Aligned_cols=159 Identities=26% Similarity=0.394 Sum_probs=131.0
Q ss_pred cccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------------EEEEEecCC--CCCC
Q 001091 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------------KKAYVPQSS--WIQT 672 (1159)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------------~iayv~Q~p--wi~~ 672 (1159)
.+++++ |+++++||.++|+||+|||||||+++|.|.++|.+|+| .++| .++|++|+| .+++
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAV-LIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeE-EECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 468999 99999999999999999999999999999999999998 7765 379999998 4788
Q ss_pred CcHHHHHhcCCC---CCh----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEe
Q 001091 673 GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFD 745 (1159)
Q Consensus 673 gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLD 745 (1159)
.|++|||.++.. .++ ++.+++++..+|.+..+ .+..+||||||||++||||++++|+++|||
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRE-----------RPTHCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999988632 222 23455555555543322 344689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccc
Q 001091 746 DPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEF 782 (1159)
Q Consensus 746 Dp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~ 782 (1159)
|||++||+.+.+.+.+ .+..+. +++|+|++||+++.
T Consensus 153 EPt~~LD~~~~~~~~~-~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 153 EPTAGLDPAGREQMLA-ILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CCcccCCHHHHHHHHH-HHHHHHHcCCEEEEEeecccc
Confidence 9999999999887654 565543 47999999999865
No 310
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.97 E-value=9.6e-31 Score=265.36 Aligned_cols=140 Identities=31% Similarity=0.521 Sum_probs=127.2
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--EEEEEecC
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQS 667 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--~iayv~Q~ 667 (1159)
++++|+++.|++ .+.+++ |+++++||.++|+|++|||||||+++|.|+++|.+|+| .++| .++|++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i-~~~~~~~i~~~~~- 70 (144)
T cd03221 1 IELENLSKTYGG--------KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV-TWGSTVKIGYFEQ- 70 (144)
T ss_pred CEEEEEEEEECC--------ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEE-EECCeEEEEEEcc-
Confidence 468899999963 358999 99999999999999999999999999999999999999 8987 5899999
Q ss_pred CCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q 001091 668 SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1159)
Q Consensus 668 pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp 747 (1159)
||||||||++||||+.++|+++|||||
T Consensus 71 -----------------------------------------------------lS~G~~~rv~laral~~~p~illlDEP 97 (144)
T cd03221 71 -----------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEP 97 (144)
T ss_pred -----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeCCe
Q 001091 748 FSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1159)
Q Consensus 748 ~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~ 796 (1159)
+++||+.+.+.+. +.++.+ ++|+|++||+++.++. ||++++|++|+
T Consensus 98 ~~~LD~~~~~~l~-~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 98 TNHLDLESIEALE-EALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred ccCCCHHHHHHHH-HHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999977664 456554 5899999999999865 89999999985
No 311
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.97 E-value=1.3e-30 Score=305.48 Aligned_cols=213 Identities=26% Similarity=0.381 Sum_probs=170.5
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCC----CCcEEEECC-----
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI----SGAAIKVHG----- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~----~G~i~~v~g----- 659 (1159)
-++++|.+..|.... .....++| ||++.+||.++|||.|||||||+.++|.|..++. +|+| ..+|
T Consensus 5 lL~V~nL~v~~~~~~----~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I-~~~g~dl~~ 79 (539)
T COG1123 5 LLEVENLTVEFATDG----GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEV-ILDGRDLLG 79 (539)
T ss_pred eEEEeceEEEEecCC----cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEE-EECCcchhc
Confidence 589999999987541 22468999 9999999999999999999999999999999987 7998 7766
Q ss_pred ------------EEEEEecCCC-CCC--CcHHHHHh----cCCCC-Ch---HHHHHHHHHhccchHHHhccCCCCccccC
Q 001091 660 ------------KKAYVPQSSW-IQT--GTIRENIL----FGKDM-RQ---SFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1159)
Q Consensus 660 ------------~iayv~Q~pw-i~~--gTIreNIl----fG~~~-d~---~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe 716 (1159)
.|||++|+|+ .+| -||.+-|. ...+. -+ ++-.+.++..+|.+.... ..
T Consensus 80 l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~ 150 (539)
T COG1123 80 LSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DR 150 (539)
T ss_pred CCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------cc
Confidence 4899999986 344 46666654 22222 22 334445555666543332 23
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccc-cCEEEEEe
Q 001091 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMK 793 (1159)
Q Consensus 717 ~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~-aD~Iivl~ 793 (1159)
-...||||||||+.||+|+..+|+++|+||||+|||+.|..+|.+ .++.+. .|.++|+|||.+..+.+ ||+|+||.
T Consensus 151 yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~-llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~ 229 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILD-LLKDLQRELGMAVLFITHDLGVVAELADRVVVMY 229 (539)
T ss_pred CCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHH-HHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEE
Confidence 356899999999999999999999999999999999999999876 566655 48899999999999865 99999999
Q ss_pred CCeEEEecChHHHHhhcchHHHHH
Q 001091 794 DGKIEQSGKYEDLIADQNSELVRQ 817 (1159)
Q Consensus 794 ~G~I~e~Gt~~eL~~~~~~~~~~l 817 (1159)
+|+|+|.|+.+++.++....|..-
T Consensus 230 ~G~iVE~G~~~~i~~~p~hpYT~~ 253 (539)
T COG1123 230 KGEIVETGPTEEILSNPQHPYTRG 253 (539)
T ss_pred CCEEEEecCHHHHHhccCCcccHH
Confidence 999999999999998555556543
No 312
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=9.2e-31 Score=287.29 Aligned_cols=213 Identities=24% Similarity=0.392 Sum_probs=166.7
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC-----CCCcEEEECC-----
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG----- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~-----~~G~i~~v~g----- 659 (1159)
++++|.+.+|.... .....++| ||++++||.++|||.|||||||+.++|+|++++ .+|+| ..+|
T Consensus 2 L~v~nL~v~f~~~~----g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i-~f~g~~l~~ 76 (316)
T COG0444 2 LEVKNLSVSFPTDA----GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEI-LFDGKDLLS 76 (316)
T ss_pred ceEeeeEEEEecCC----ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEE-EECCccccc
Confidence 57888888886541 13568999 999999999999999999999999999999983 55777 6655
Q ss_pred ------------EEEEEecCCCC-C--CCcHHHHH----hcCCCC--C---hHHHHHHHHHhccch---HHHhccCCCCc
Q 001091 660 ------------KKAYVPQSSWI-Q--TGTIRENI----LFGKDM--R---QSFYEEVLEGCALNQ---DIEMWADGDLS 712 (1159)
Q Consensus 660 ------------~iayv~Q~pwi-~--~gTIreNI----lfG~~~--d---~~~y~~vl~ac~L~~---dl~~lp~Gd~T 712 (1159)
.|||++|+|-- + --||.+-| ...... . .++-.+.++..++.+ -++..|
T Consensus 77 l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP----- 151 (316)
T COG0444 77 LSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP----- 151 (316)
T ss_pred CCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC-----
Confidence 58999999842 2 23554444 322221 1 234555666666654 244444
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEE
Q 001091 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLV 789 (1159)
Q Consensus 713 ~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~I 789 (1159)
..|||||||||.||-|+..+|+++|-||||+|||..+..+|.+ .++.+. .|.|+|+|||++..+. .||+|
T Consensus 152 ------helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~-Ll~~l~~e~~~aiilITHDl~vva~~aDri 224 (316)
T COG0444 152 ------HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILD-LLKELQREKGTALILITHDLGVVAEIADRV 224 (316)
T ss_pred ------cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcceE
Confidence 5899999999999999999999999999999999999999876 455554 4899999999999875 59999
Q ss_pred EEEeCCeEEEecChHHHHhhcchHHHH-HHHH
Q 001091 790 LVMKDGKIEQSGKYEDLIADQNSELVR-QMKA 820 (1159)
Q Consensus 790 ivl~~G~I~e~Gt~~eL~~~~~~~~~~-l~~~ 820 (1159)
.||..|+|+|.|+.+++.++....|.+ |+++
T Consensus 225 ~VMYaG~iVE~g~~~~i~~~P~HPYT~~Ll~s 256 (316)
T COG0444 225 AVMYAGRIVEEGPVEEIFKNPKHPYTRGLLNS 256 (316)
T ss_pred EEEECcEEEEeCCHHHHhcCCCChHHHHHHHh
Confidence 999999999999999999866666654 4443
No 313
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=7.4e-31 Score=259.22 Aligned_cols=194 Identities=27% Similarity=0.389 Sum_probs=165.0
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.|++++++.+-.+.. .+-.+|++ ++.|++||.++||||+||||||||..+.|.-+|++|+| .+.|
T Consensus 6 ii~~~~l~ktvg~~~----~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV-~l~G~~L~~ldEd 80 (228)
T COG4181 6 IIEVHHLSKTVGQGE----GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEV-RLLGQPLHKLDED 80 (228)
T ss_pred eeehhhhhhhhcCCC----cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceE-EEcCcchhhcCHH
Confidence 477777776665431 34578999 99999999999999999999999999999999999999 7655
Q ss_pred --------EEEEEecCCC-CCCCcHHHHHhcCCCCC-------hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCH
Q 001091 660 --------KKAYVPQSSW-IQTGTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1159)
Q Consensus 660 --------~iayv~Q~pw-i~~gTIreNIlfG~~~d-------~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSG 723 (1159)
++++|.|.-. |.|.|--||+..-.+.+ .+.-++-+++.+|.+-+...| ..|||
T Consensus 81 ~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP-----------~qLSG 149 (228)
T COG4181 81 ARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP-----------AQLSG 149 (228)
T ss_pred HHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc-----------cccCc
Confidence 5999999965 58999999997643322 234667788888887777666 47999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh-hhcCCcEEEEEccCcccccccCEEEEEeCCeEEE
Q 001091 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLM-GLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1159)
Q Consensus 724 GQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~-g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e 799 (1159)
|++|||+||||+..+|+|++-||||-+||..|+++|.+-.+. .--+|.|.|+|||+......|||++-|++|+|++
T Consensus 150 GEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 150 GEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred hHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 999999999999999999999999999999999999876553 2336899999999999999999999999999985
No 314
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=1.6e-30 Score=344.88 Aligned_cols=201 Identities=24% Similarity=0.366 Sum_probs=170.9
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
..|+++|+++.|++. +.++++| |+++++||+++|+||+|||||||+++|.|..+|++|+| .++|
T Consensus 927 ~~L~I~nLsK~y~~~------~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I-~i~G~dI~~~~~ 999 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS------GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTV-LVGGKDIETNLD 999 (2272)
T ss_pred ceEEEEeEEEEecCC------CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEE-EECCEECcchHH
Confidence 469999999999632 2568999 99999999999999999999999999999999999999 8877
Q ss_pred ----EEEEEecCCCCCC-CcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHH
Q 001091 660 ----KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1159)
Q Consensus 660 ----~iayv~Q~pwi~~-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQ 727 (1159)
.++||||++.+++ .|++|||.|+.. .+ +++.++.++.++|.+. ...+..+|||||||
T Consensus 1000 ~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~-----------~~~~~~~LSGGqKQ 1068 (2272)
T TIGR01257 1000 AVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHK-----------RNEEAQDLSGGMQR 1068 (2272)
T ss_pred HHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHH
Confidence 3899999998875 599999987532 11 2344555666655432 34556789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEEEEEeCCeEEEecChHHH
Q 001091 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDL 806 (1159)
Q Consensus 728 RIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL 806 (1159)
|++||||+..+|+++|||||||+||+...+++.+ .++.+.+|+|+|++||+++.+. .||+|++|++|+++..|+.++|
T Consensus 1069 RLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~-lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~L 1147 (2272)
T TIGR01257 1069 KLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWD-LLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFL 1147 (2272)
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHH-HHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999887765 5666667999999999999986 5999999999999999999999
Q ss_pred Hh
Q 001091 807 IA 808 (1159)
Q Consensus 807 ~~ 808 (1159)
.+
T Consensus 1148 k~ 1149 (2272)
T TIGR01257 1148 KN 1149 (2272)
T ss_pred HH
Confidence 75
No 315
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7e-31 Score=320.58 Aligned_cols=192 Identities=23% Similarity=0.385 Sum_probs=153.5
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|+++.+ . .+++| ||++++|++++|+||+|||||||+++|.|..+|++|+| .++|
T Consensus 265 ~l~~~~l~~~~--~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I-~~~g~~~~~~~~~ 333 (510)
T PRK09700 265 VFEVRNVTSRD--R--------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEI-RLNGKDISPRSPL 333 (510)
T ss_pred EEEEeCccccC--C--------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeE-EECCEECCCCCHH
Confidence 59999999864 1 26999 99999999999999999999999999999999999999 7765
Q ss_pred -----EEEEEecCC---CCC-CCcHHHHHhcCCCC------------Ch----HHHHHHHHHhccchHHHhccCCCCccc
Q 001091 660 -----KKAYVPQSS---WIQ-TGTIRENILFGKDM------------RQ----SFYEEVLEGCALNQDIEMWADGDLSVV 714 (1159)
Q Consensus 660 -----~iayv~Q~p---wi~-~gTIreNIlfG~~~------------d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~I 714 (1159)
.++||+|++ -++ +-|++||+.++... ++ ++.+++++..+|.. + ..
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~----~~ 403 (510)
T PRK09700 334 DAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC------H----SV 403 (510)
T ss_pred HHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC------C----Cc
Confidence 379999984 344 56999999886431 11 11223333333320 1 12
Q ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEE
Q 001091 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVM 792 (1159)
Q Consensus 715 Ge~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl 792 (1159)
......||||||||++||||+..+|+++|||||||+||+.+.+.+.+ .++.+. +|+|+|+|||+++.+. .||+|++|
T Consensus 404 ~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l 482 (510)
T PRK09700 404 NQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYK-VMRQLADDGKVILMVSSELPEIITVCDRIAVF 482 (510)
T ss_pred cCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEE
Confidence 34456799999999999999999999999999999999999877754 565543 5899999999999864 59999999
Q ss_pred eCCeEEEecCh
Q 001091 793 KDGKIEQSGKY 803 (1159)
Q Consensus 793 ~~G~I~e~Gt~ 803 (1159)
++|++++.++.
T Consensus 483 ~~G~i~~~~~~ 493 (510)
T PRK09700 483 CEGRLTQILTN 493 (510)
T ss_pred ECCEEEEEecC
Confidence 99999988765
No 316
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.8e-31 Score=279.92 Aligned_cols=179 Identities=26% Similarity=0.469 Sum_probs=157.9
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-----------------EEEEEecCCCCC-CCcHHHH
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------------KKAYVPQSSWIQ-TGTIREN 678 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-----------------~iayv~Q~pwi~-~gTIreN 678 (1159)
|++.+.-..+|+-|+||||||||+++|.|...|.+|.| .++| +||||.||+-+| +-|||-|
T Consensus 18 ~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I-~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgN 96 (352)
T COG4148 18 NFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRI-ELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGN 96 (352)
T ss_pred eccCCCCceEEEecCCCCChhhHHHHHhccCCccccEE-EECCEEeecccCCcccChhhheeeeEeeccccccceEEecc
Confidence 67777767999999999999999999999999999999 8887 489999999987 5799999
Q ss_pred HhcCCCCC-hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 001091 679 ILFGKDMR-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT 757 (1159)
Q Consensus 679 IlfG~~~d-~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~ 757 (1159)
+.||.... .+.+++++..-++.+-++..| .+||||+||||||+|||..+|+++|+|||+|+||-...+
T Consensus 97 L~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~ 165 (352)
T COG4148 97 LRYGMWKSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKR 165 (352)
T ss_pred hhhhhcccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhh
Confidence 99998664 567888988888888777776 589999999999999999999999999999999999887
Q ss_pred HHHHHHHhhhcC--CcEEEEEccCcccc-cccCEEEEEeCCeEEEecChHHHHh
Q 001091 758 HLFKQCLMGLLS--QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 758 ~if~~~i~g~l~--~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
.|+. .+..+.+ +--+++|||.++.+ +-||+|++|+||++...|+-+|..+
T Consensus 166 Eilp-ylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 166 EILP-YLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred HHHH-HHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 7754 3444443 46799999999875 6699999999999999999999986
No 317
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.8e-30 Score=265.48 Aligned_cols=201 Identities=28% Similarity=0.413 Sum_probs=166.2
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE---------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~--------- 660 (1159)
|+.+|++++-.. +..+++ ++++++||.+||+||+|+||||||++|.||+.|.+|++ .++|.
T Consensus 2 i~a~nls~~~~G--------r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v-~~~g~~l~~~~~~~ 72 (259)
T COG4559 2 IRAENLSYSLAG--------RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV-TLNGVPLNSWPPEE 72 (259)
T ss_pred eeeeeeEEEeec--------ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeE-eeCCcChhhCCHHH
Confidence 677888887653 467888 99999999999999999999999999999999999999 88873
Q ss_pred ----EEEEecCCCC-CCCcHHHHHhcCC-CC----ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHH
Q 001091 661 ----KAYVPQSSWI-QTGTIRENILFGK-DM----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1159)
Q Consensus 661 ----iayv~Q~pwi-~~gTIreNIlfG~-~~----d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIa 730 (1159)
-|..||+.-+ |.=|++|-+.+|+ |. +.++-+++.+.|-..-|+..|...| -..||||++|||.
T Consensus 73 lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-------y~~LSGGEqQRVq 145 (259)
T COG4559 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD-------YRTLSGGEQQRVQ 145 (259)
T ss_pred HHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc-------hhhcCchHHHHHH
Confidence 5899999776 8999999999996 33 2224445555555555666665544 3579999999999
Q ss_pred HHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccc-cccCEEEEEeCCeEEEecC
Q 001091 731 LARAVYS------NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGK 802 (1159)
Q Consensus 731 LARAly~------~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt 802 (1159)
|||.|.+ ++++++|||||||||.+...++++- .+.+. +|..|+.|-|+++.. .+||+|++|.+||++..|+
T Consensus 146 lARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~l-aR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~ 224 (259)
T COG4559 146 LARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRL-ARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGS 224 (259)
T ss_pred HHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHH-HHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCC
Confidence 9999986 4558999999999999998877763 34433 578999999999985 6699999999999999999
Q ss_pred hHHHHh
Q 001091 803 YEDLIA 808 (1159)
Q Consensus 803 ~~eL~~ 808 (1159)
++|.+.
T Consensus 225 p~~vlt 230 (259)
T COG4559 225 PQDVLT 230 (259)
T ss_pred HHHhcC
Confidence 999886
No 318
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.8e-31 Score=270.43 Aligned_cols=204 Identities=25% Similarity=0.395 Sum_probs=166.5
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.+..+|...+|.. .++.++ ||++++||.|++.||+|+||||....+.|+++|++|+| .+++
T Consensus 4 ~L~a~~l~K~y~k--------r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i-~ld~~diT~lPm~ 74 (243)
T COG1137 4 TLVAENLAKSYKK--------RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKI-LLDDEDITKLPMH 74 (243)
T ss_pred EEEehhhhHhhCC--------eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceE-EECCcccccCChH
Confidence 3567777778854 478899 99999999999999999999999999999999999999 8877
Q ss_pred -----EEEEEecCCCCCCC-cHHHHHhcCCCCCh---HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHH
Q 001091 660 -----KKAYVPQSSWIQTG-TIRENILFGKDMRQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1159)
Q Consensus 660 -----~iayv~Q~pwi~~g-TIreNIlfG~~~d~---~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIa 730 (1159)
-++|.||+|-||.+ ||+|||.---++.+ ++-++-.+.-+|-+++. ....-...|.+||||+|.|+-
T Consensus 75 ~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~-----i~hlr~~~a~sLSGGERRR~E 149 (243)
T COG1137 75 KRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFH-----ITHLRDSKAYSLSGGERRRVE 149 (243)
T ss_pred HHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhc-----hHHHhcCcccccccchHHHHH
Confidence 28999999999976 99999986554322 22222223333444332 222334679999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcc-cccccCEEEEEeCCeEEEecChHHHHh
Q 001091 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLE-FLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 731 LARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~-~l~~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
|||||..+|+.+||||||+++||-.-..| ++.+..+. +|--|++.-|++. ++.-||+.+++.+|+|..+|+++|+.+
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dI-q~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDI-QRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHH-HHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 99999999999999999999999987776 66665544 4667788889885 689999999999999999999999987
No 319
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.97 E-value=2.8e-30 Score=322.21 Aligned_cols=201 Identities=26% Similarity=0.374 Sum_probs=167.3
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|+++.|+... ...+.+++ |+++++||.++|+||+|||||||+++|.|+++|++|++ .++|
T Consensus 4 ~l~~~nl~~~y~~~~----~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~i~~~~~~ 78 (648)
T PRK10535 4 LLELKDIRRSYPSGE----EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTY-RVAGQDVATLDAD 78 (648)
T ss_pred EEEEeeEEEEeCCCC----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEcCcCCHH
Confidence 489999999996420 12468999 99999999999999999999999999999999999998 7765
Q ss_pred --------EEEEEecCCCCCC-CcHHHHHhcCCCC---C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCH
Q 001091 660 --------KKAYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1159)
Q Consensus 660 --------~iayv~Q~pwi~~-gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSG 723 (1159)
.++|++|+|.++. .|+.||+.++..+ + +++..+.++.++|.+. +.....+|||
T Consensus 79 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~-----------~~~~~~~LS~ 147 (648)
T PRK10535 79 ALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDR-----------VEYQPSQLSG 147 (648)
T ss_pred HHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hcCCcccCCH
Confidence 3799999999886 5999999864311 1 2233445555555433 3344568999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEEEEEeCCeEEEecC
Q 001091 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1159)
Q Consensus 724 GQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt 802 (1159)
|||||++||||+.++|+++||||||++||+.+.+.+. +.++.+. +++|+|++||+++.+..||++++|++|+++++|+
T Consensus 148 Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~-~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~ 226 (648)
T PRK10535 148 GQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVM-AILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPP 226 (648)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999987765 4566654 4899999999999998899999999999999999
Q ss_pred hHHHH
Q 001091 803 YEDLI 807 (1159)
Q Consensus 803 ~~eL~ 807 (1159)
.+|..
T Consensus 227 ~~~~~ 231 (648)
T PRK10535 227 AQEKV 231 (648)
T ss_pred ccccc
Confidence 98875
No 320
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=1.2e-30 Score=317.84 Aligned_cols=199 Identities=20% Similarity=0.302 Sum_probs=157.3
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC-CCCcEEEECC--------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-ISGAAIKVHG-------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~-~~G~i~~v~g-------- 659 (1159)
.++++|+++.|+.. ....++++ ||++++||+++|+||+|||||||+++|.|.++| .+|+| .++|
T Consensus 257 ~l~~~~l~~~~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i-~~~g~~~~~~~~ 330 (500)
T TIGR02633 257 ILEARNLTCWDVIN-----PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNV-FINGKPVDIRNP 330 (500)
T ss_pred eEEEeCCccccccc-----ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEE-EECCEECCCCCH
Confidence 58999999988421 12458999 999999999999999999999999999999985 89999 7765
Q ss_pred ------EEEEEecCC----CCCCCcHHHHHhcCCC--------CCh----HHHHHHHHHhccchHHHhccCCCCccccCC
Q 001091 660 ------KKAYVPQSS----WIQTGTIRENILFGKD--------MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1159)
Q Consensus 660 ------~iayv~Q~p----wi~~gTIreNIlfG~~--------~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~ 717 (1159)
+++|++|++ ...+.|++||+.++.. .++ ++.++.++.+++..+ .....
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~ 400 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTA----------SPFLP 400 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCC----------CccCc
Confidence 379999996 3455799999988631 111 223344444443211 12234
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeCC
Q 001091 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDG 795 (1159)
Q Consensus 718 G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G 795 (1159)
...||||||||++||||+..+|+++||||||++||+.+.+.+.+ .++.+. +|+|+|+|||+++++. .||+|++|++|
T Consensus 401 ~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G 479 (500)
T TIGR02633 401 IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYK-LINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEG 479 (500)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 46799999999999999999999999999999999999877654 455543 5899999999999885 59999999999
Q ss_pred eEEEecChHH
Q 001091 796 KIEQSGKYED 805 (1159)
Q Consensus 796 ~I~e~Gt~~e 805 (1159)
+|+..++-++
T Consensus 480 ~i~~~~~~~~ 489 (500)
T TIGR02633 480 KLKGDFVNHA 489 (500)
T ss_pred EEEEEEcccc
Confidence 9998775544
No 321
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=9.1e-31 Score=260.04 Aligned_cols=200 Identities=27% Similarity=0.423 Sum_probs=164.2
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
.+++++|....|.. ..+|++ +++.++|+.+.|+|.+||||||+|+||.=+-.|..|.| .++|
T Consensus 5 ~~l~v~dlHK~~G~--------~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I-~v~geei~~k~~ 75 (256)
T COG4598 5 NALEVEDLHKRYGE--------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI-RVNGEEIRLKRD 75 (256)
T ss_pred cceehhHHHhhccc--------chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceE-EECCeEEEeeeC
Confidence 46788888888864 368999 99999999999999999999999999999999999999 7776
Q ss_pred ------------------EEEEEecCCCCC-CCcHHHHHh------cCCCCCh--HHHHHHHHHhccchHHHhccCCCCc
Q 001091 660 ------------------KKAYVPQSSWIQ-TGTIRENIL------FGKDMRQ--SFYEEVLEGCALNQDIEMWADGDLS 712 (1159)
Q Consensus 660 ------------------~iayv~Q~pwi~-~gTIreNIl------fG~~~d~--~~y~~vl~ac~L~~dl~~lp~Gd~T 712 (1159)
+.+.|.|.--+. ..|+-||+. .|.+-++ ++-+.-+...++.+--+..
T Consensus 76 ~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~Y------ 149 (256)
T COG4598 76 KDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAY------ 149 (256)
T ss_pred CCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcC------
Confidence 258999987664 579999986 3443332 3444555555655433333
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEE
Q 001091 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVL 790 (1159)
Q Consensus 713 ~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Ii 790 (1159)
...|||||+||++|||||.-+|+++|+|||||||||+--..+.+ ++..+. .|||.++|||.+.|.++ +.+|+
T Consensus 150 -----P~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLk-v~~~LAeEgrTMv~VTHEM~FAR~Vss~v~ 223 (256)
T COG4598 150 -----PAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLK-VMQDLAEEGRTMVVVTHEMGFARDVSSHVI 223 (256)
T ss_pred -----ccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHH-HHHHHHHhCCeEEEEeeehhHHHhhhhheE
Confidence 46899999999999999999999999999999999986665543 454443 69999999999999987 78999
Q ss_pred EEeCCeEEEecChHHHHhh
Q 001091 791 VMKDGKIEQSGKYEDLIAD 809 (1159)
Q Consensus 791 vl~~G~I~e~Gt~~eL~~~ 809 (1159)
.+.+|.|.|+|+++++..+
T Consensus 224 fLh~G~iEE~G~P~qvf~n 242 (256)
T COG4598 224 FLHQGKIEEEGPPEQVFGN 242 (256)
T ss_pred EeecceecccCChHHHhcC
Confidence 9999999999999999874
No 322
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.97 E-value=2.9e-30 Score=343.32 Aligned_cols=203 Identities=23% Similarity=0.376 Sum_probs=169.4
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc---CCCCcEEEECC------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP---RISGAAIKVHG------ 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~---~~~G~i~~v~g------ 659 (1159)
.++++|++++++... ..+.+|+| |+++++||+++|+||+||||||||++|.|..+ +.+|+| .++|
T Consensus 759 ~l~~~nl~~~~~~~~----~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I-~i~G~~~~~~ 833 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKK----EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDR-LVNGRPLDSS 833 (1394)
T ss_pred eEEEEeeEEEecCCC----CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEE-EECCEECChh
Confidence 478999999986320 23578999 99999999999999999999999999999997 688999 8887
Q ss_pred ---EEEEEecCC-CCCCCcHHHHHhcCC------CCCh-H---HHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHH
Q 001091 660 ---KKAYVPQSS-WIQTGTIRENILFGK------DMRQ-S---FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1159)
Q Consensus 660 ---~iayv~Q~p-wi~~gTIreNIlfG~------~~d~-~---~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQ 725 (1159)
.+|||+|++ .+++.|||||+.|+. ..++ + +.+++++..+|. +-.++.||+.|.+|||||
T Consensus 834 ~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~d~~v~~~~~~LSgGq 906 (1394)
T TIGR00956 834 FQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-------SYADAVVGVPGEGLNVEQ 906 (1394)
T ss_pred hhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhCCCeeCCCCCCCCHHH
Confidence 379999986 467789999999853 1222 2 345566666553 345889999999999999
Q ss_pred HHHHHHHHHHccCCC-EEEEeCCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCccc--ccccCEEEEEeCC-eEEEe
Q 001091 726 KQRIQLARAVYSNSD-VYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEF--LDAADLVLVMKDG-KIEQS 800 (1159)
Q Consensus 726 KQRIaLARAly~~a~-I~LLDDp~SALD~~t~~~if~~~i~g~-l~~kTvIlVTH~l~~--l~~aD~Iivl~~G-~I~e~ 800 (1159)
|||++||||+.++|+ |++||||||+||++++.++.+ .++.+ .+|+|+|++||+++. ...+|+|++|++| ++++.
T Consensus 907 rqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~-~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~ 985 (1394)
T TIGR00956 907 RKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICK-LMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYF 985 (1394)
T ss_pred hhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEE
Confidence 999999999999997 999999999999999887754 56554 468999999999986 3679999999987 99999
Q ss_pred cChHH
Q 001091 801 GKYED 805 (1159)
Q Consensus 801 Gt~~e 805 (1159)
|+.++
T Consensus 986 G~~~~ 990 (1394)
T TIGR00956 986 GDLGE 990 (1394)
T ss_pred CCccc
Confidence 99754
No 323
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.7e-30 Score=253.71 Aligned_cols=198 Identities=27% Similarity=0.381 Sum_probs=164.1
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
+|+++|.+|.|... ..|.| +++.+.|+.+.+.||+|+|||||++.+.=.--|.+|+. .+.+
T Consensus 2 sirv~~in~~yg~~--------q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l-~ia~~~fd~s~~~ 72 (242)
T COG4161 2 SIQLNGINCFYGAH--------QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL-NIAGNHFDFSKTP 72 (242)
T ss_pred ceEEcccccccccc--------hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeE-EecccccccccCc
Confidence 48899999999753 57889 99999999999999999999999998876666889987 6644
Q ss_pred ----------EEEEEecCCCC-CCCcHHHHHhc------CCCCCh--HHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 ----------KKAYVPQSSWI-QTGTIRENILF------GKDMRQ--SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 ----------~iayv~Q~pwi-~~gTIreNIlf------G~~~d~--~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
++|.|.|+-.+ ...|+-||+.= |-+-++ .+-.+.++.-.|.+.-+.+| ..
T Consensus 73 ~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lh 141 (242)
T COG4161 73 SDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LH 141 (242)
T ss_pred cHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------ee
Confidence 48999999776 56899999863 333232 23445566666665555555 57
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeEE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~ 798 (1159)
|||||+|||+||||+.-+|+++|+||||+||||+...++.+ .|+++. .|-|-++|||.+++.++ |.+|+.|++|+|+
T Consensus 142 lsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~-iikel~~tgitqvivthev~va~k~as~vvyme~g~iv 220 (242)
T COG4161 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS-IIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIV 220 (242)
T ss_pred cccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHH-HHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeE
Confidence 99999999999999999999999999999999998888865 466655 48899999999999865 9999999999999
Q ss_pred EecChHHHHh
Q 001091 799 QSGKYEDLIA 808 (1159)
Q Consensus 799 e~Gt~~eL~~ 808 (1159)
|+|+++-.-+
T Consensus 221 e~g~a~~ft~ 230 (242)
T COG4161 221 EQGDASCFTE 230 (242)
T ss_pred eecchhhccC
Confidence 9999877655
No 324
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=5.6e-30 Score=339.77 Aligned_cols=202 Identities=19% Similarity=0.308 Sum_probs=169.8
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-------
Q 001091 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1159)
Q Consensus 588 ~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g------- 659 (1159)
+..|+++|+++.|+.. ..++++| |++|++||+++|+||+|||||||+++|.|+.+|++|+| .++|
T Consensus 1935 ~~~L~v~nLsK~Y~~~------~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I-~i~G~~i~~~~ 2007 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGT------SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDA-TVAGKSILTNI 2007 (2272)
T ss_pred CceEEEEEEEEEECCC------CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEE-EECCEECcchH
Confidence 3469999999999742 2568999 99999999999999999999999999999999999999 8876
Q ss_pred -----EEEEEecCCCCC-CCcHHHHHhcCCC---CCh----HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHH
Q 001091 660 -----KKAYVPQSSWIQ-TGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1159)
Q Consensus 660 -----~iayv~Q~pwi~-~gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQK 726 (1159)
.+|||||++-++ +.|++||+.+... ..+ ++.+++++.++|.+..+ .+...||||||
T Consensus 2008 ~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~d-----------k~~~~LSGGqK 2076 (2272)
T TIGR01257 2008 SDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYAD-----------RLAGTYSGGNK 2076 (2272)
T ss_pred HHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhc-----------CChhhCCHHHH
Confidence 389999998776 4699999976321 122 23445666677654322 34568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeEEEecChH
Q 001091 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYE 804 (1159)
Q Consensus 727 QRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~ 804 (1159)
||++||||+..+|+|++|||||++||+...+.+.+ .++.+. +|+|+|++||+++.+.. ||+|++|++|++...|+.+
T Consensus 2077 qRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~-lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q 2155 (2272)
T TIGR01257 2077 RKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWN-TIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQ 2155 (2272)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999887765 565543 58999999999998865 9999999999999999999
Q ss_pred HHHh
Q 001091 805 DLIA 808 (1159)
Q Consensus 805 eL~~ 808 (1159)
++.+
T Consensus 2156 ~Lk~ 2159 (2272)
T TIGR01257 2156 HLKS 2159 (2272)
T ss_pred HHHH
Confidence 9976
No 325
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=1.3e-29 Score=311.76 Aligned_cols=198 Identities=27% Similarity=0.385 Sum_probs=160.8
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--EEEEEe
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVP 665 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--~iayv~ 665 (1159)
..++++|++++|++ .+++++ ||+|++|++++|+||+|||||||+++|.|+.+|.+|+| .+++ +++|++
T Consensus 321 ~~l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i-~~~~~~~i~~v~ 391 (552)
T TIGR03719 321 KVIEAENLSKGFGD--------KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI-KIGETVKLAYVD 391 (552)
T ss_pred eEEEEeeEEEEECC--------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEE-EECCceEEEEEe
Confidence 46999999999963 368999 99999999999999999999999999999999999999 7765 599999
Q ss_pred cCC-CCC-CCcHHHHHhcCCCC---C--hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 001091 666 QSS-WIQ-TGTIRENILFGKDM---R--QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738 (1159)
Q Consensus 666 Q~p-wi~-~gTIreNIlfG~~~---d--~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~ 738 (1159)
|++ .++ +.|++||+.++... + +.+.+++++..++..+. ......+||||||||++||||+..+
T Consensus 392 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGe~qrv~la~al~~~ 461 (552)
T TIGR03719 392 QSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD----------QQKKVGQLSGGERNRVHLAKTLKSG 461 (552)
T ss_pred CCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHHHHhhC
Confidence 996 344 56999999987431 1 22334455555543211 2234568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeC-CeEE-EecChHHHHh
Q 001091 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKD-GKIE-QSGKYEDLIA 808 (1159)
Q Consensus 739 a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~-G~I~-e~Gt~~eL~~ 808 (1159)
|+++||||||++||+.+.+.+. +.+..+ + .|+|+|||+++++.. ||+|++|++ |++. ..|+++++.+
T Consensus 462 p~lllLDEPt~~LD~~~~~~l~-~~l~~~-~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 462 GNVLLLDEPTNDLDVETLRALE-EALLEF-A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred CCEEEEeCCCCCCCHHHHHHHH-HHHHHC-C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 9999999999999999987765 456554 3 499999999999865 999999987 5876 5789888765
No 326
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3e-30 Score=314.16 Aligned_cols=195 Identities=20% Similarity=0.332 Sum_probs=157.1
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|+++ ..+++| ||++++||+++|+||+|||||||+++|+|+.+|.+|+| .++|
T Consensus 257 ~l~~~~~~~------------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i-~~~g~~~~~~~~~ 323 (501)
T PRK11288 257 RLRLDGLKG------------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQV-YLDGKPIDIRSPR 323 (501)
T ss_pred EEEEecccc------------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceE-EECCEECCCCCHH
Confidence 578888863 137899 99999999999999999999999999999999999999 7765
Q ss_pred -----EEEEEecCC----CCCCCcHHHHHhcCCCC---------Ch----HHHHHHHHHhccchHHHhccCCCCccccCC
Q 001091 660 -----KKAYVPQSS----WIQTGTIRENILFGKDM---------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1159)
Q Consensus 660 -----~iayv~Q~p----wi~~gTIreNIlfG~~~---------d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~ 717 (1159)
.++|++|+| ...+.|+.||+.++... ++ ++.++.++.+++.++ .....
T Consensus 324 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~ 393 (501)
T PRK11288 324 DAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTP----------SREQL 393 (501)
T ss_pred HHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccC----------CccCc
Confidence 378999997 44568999999876311 11 223344444444211 12334
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeCC
Q 001091 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDG 795 (1159)
Q Consensus 718 G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G 795 (1159)
..+||||||||++||||+..+|+++||||||++||..+.+.+.+ ++..+. .|+|+|+|||+++++. .||+|++|++|
T Consensus 394 ~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g 472 (501)
T PRK11288 394 IMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYN-VIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREG 472 (501)
T ss_pred cccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECC
Confidence 56899999999999999999999999999999999999877754 565554 4899999999999874 59999999999
Q ss_pred eEEEecChHHHHh
Q 001091 796 KIEQSGKYEDLIA 808 (1159)
Q Consensus 796 ~I~e~Gt~~eL~~ 808 (1159)
++++.|+.+|...
T Consensus 473 ~i~~~~~~~~~~~ 485 (501)
T PRK11288 473 RIAGELAREQATE 485 (501)
T ss_pred EEEEEEccccCCH
Confidence 9999999887643
No 327
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=1.1e-29 Score=317.06 Aligned_cols=198 Identities=21% Similarity=0.348 Sum_probs=163.4
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--EEEEEe
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVP 665 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--~iayv~ 665 (1159)
..++++|+++.|++. .++++| ||+|++|++++|+||+|||||||+++|.|+++|.+|+| .+++ +++|++
T Consensus 507 ~~L~~~~ls~~y~~~-------~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I-~~~~~~~igyv~ 578 (718)
T PLN03073 507 PIISFSDASFGYPGG-------PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV-FRSAKVRMAVFS 578 (718)
T ss_pred ceEEEEeeEEEeCCC-------CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceE-EECCceeEEEEe
Confidence 469999999999643 468999 99999999999999999999999999999999999999 7765 599999
Q ss_pred cCCCCCCCcHHHHHhcC-----CCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 001091 666 QSSWIQTGTIRENILFG-----KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1159)
Q Consensus 666 Q~pwi~~gTIreNIlfG-----~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~ 740 (1159)
|++. ...++.+|+... ...++++++++++..++..+.. .....+||||||||++||||++++|+
T Consensus 579 Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~----------~~~~~~LSgGqkqRvaLAraL~~~p~ 647 (718)
T PLN03073 579 QHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKPH 647 (718)
T ss_pred cccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHh----------cCCccccCHHHHHHHHHHHHHhcCCC
Confidence 9973 344667775321 1234677888888888865432 13456899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeCCeEE-EecChHHHHh
Q 001091 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE-QSGKYEDLIA 808 (1159)
Q Consensus 741 I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~-e~Gt~~eL~~ 808 (1159)
++||||||++||+.+.+.+.+ .+... + .|+|+|||+++++.. ||+|++|++|+++ ..|++++..+
T Consensus 648 lLLLDEPT~~LD~~s~~~l~~-~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 648 ILLLDEPSNHLDLDAVEALIQ-GLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred EEEEcCCCCCCCHHHHHHHHH-HHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 999999999999999887654 34433 3 499999999999865 9999999999998 6798887643
No 328
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=1.7e-29 Score=310.92 Aligned_cols=198 Identities=25% Similarity=0.378 Sum_probs=161.1
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--EEEEEe
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVP 665 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--~iayv~ 665 (1159)
..++++|+++.|++ .++++| ||+|++|++++|+||+|||||||+++|.|..+|.+|+| .+++ ++||++
T Consensus 323 ~~l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i-~~~~~~~i~~v~ 393 (556)
T PRK11819 323 KVIEAENLSKSFGD--------RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI-KIGETVKLAYVD 393 (556)
T ss_pred eEEEEEeEEEEECC--------eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCceEEEEEe
Confidence 46999999999963 368999 99999999999999999999999999999999999999 7765 599999
Q ss_pred cCC-CCC-CCcHHHHHhcCCCC-----ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 001091 666 QSS-WIQ-TGTIRENILFGKDM-----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738 (1159)
Q Consensus 666 Q~p-wi~-~gTIreNIlfG~~~-----d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~ 738 (1159)
|++ .++ +.|++||+.++... ++.+.++.++..++..+. ......+||||||||++||||+..+
T Consensus 394 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~la~al~~~ 463 (556)
T PRK11819 394 QSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGD----------QQKKVGVLSGGERNRLHLAKTLKQG 463 (556)
T ss_pred CchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHHHHhcC
Confidence 997 454 56999999886421 122333444444443211 1234568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeC-CeEE-EecChHHHHh
Q 001091 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKD-GKIE-QSGKYEDLIA 808 (1159)
Q Consensus 739 a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~-G~I~-e~Gt~~eL~~ 808 (1159)
|+++||||||++||+.+.+.+. +.+..+ + .|+|+|||+++++.. ||+|++|++ |++. ..|+++++.+
T Consensus 464 p~lllLDEPt~~LD~~~~~~l~-~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 464 GNVLLLDEPTNDLDVETLRALE-EALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred CCEEEEcCCCCCCCHHHHHHHH-HHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 9999999999999999987765 456554 3 499999999998765 999999986 7886 4899998876
No 329
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.97 E-value=3e-30 Score=314.14 Aligned_cols=193 Identities=20% Similarity=0.377 Sum_probs=155.7
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|++. +.+++ ||++++||+++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 257 ~l~~~~l~~-------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I-~~~g~~i~~~~~~ 322 (501)
T PRK10762 257 RLKVDNLSG-------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYV-TLDGHEVVTRSPQ 322 (501)
T ss_pred EEEEeCccc-------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCCCCHH
Confidence 588888762 25889 99999999999999999999999999999999999999 8866
Q ss_pred -----EEEEEecCC---CC-CCCcHHHHHhcCCC---------CC----hHHHHHHHHHhccchHHHhccCCCCccccCC
Q 001091 660 -----KKAYVPQSS---WI-QTGTIRENILFGKD---------MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1159)
Q Consensus 660 -----~iayv~Q~p---wi-~~gTIreNIlfG~~---------~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~ 717 (1159)
.++|++|+| .+ .+.|++||+.++.. .+ +++.+++++.++|.. -.....
T Consensus 323 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~ 392 (501)
T PRK10762 323 DGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT----------PSMEQA 392 (501)
T ss_pred HHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC----------CCccCc
Confidence 389999997 34 45799999987521 11 122334444443321 113455
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeCC
Q 001091 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDG 795 (1159)
Q Consensus 718 G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G 795 (1159)
..+||||||||++||||+..+|+++||||||++||+.+.+.+.+ .++.+. +|+|+|++||+++.+. .||+|++|++|
T Consensus 393 ~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 471 (501)
T PRK10762 393 IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQ-LINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEG 471 (501)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECC
Confidence 66899999999999999999999999999999999999877654 565554 4889999999999875 59999999999
Q ss_pred eEEEecChHHHH
Q 001091 796 KIEQSGKYEDLI 807 (1159)
Q Consensus 796 ~I~e~Gt~~eL~ 807 (1159)
+|+..|+.+++.
T Consensus 472 ~i~~~~~~~~~~ 483 (501)
T PRK10762 472 RISGEFTREQAT 483 (501)
T ss_pred EEEEEeccccCC
Confidence 999999887753
No 330
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.5e-29 Score=314.72 Aligned_cols=199 Identities=24% Similarity=0.446 Sum_probs=162.9
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--EEEEE
Q 001091 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYV 664 (1159)
Q Consensus 588 ~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--~iayv 664 (1159)
+..|+++|+++.|++ .+++++ ||+|++|++++|+||+|||||||+++|.|+++|++|+| .+++ +++|+
T Consensus 310 ~~~l~~~~l~~~y~~--------~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i-~~~~~~~igy~ 380 (638)
T PRK10636 310 NPLLKMEKVSAGYGD--------RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI-GLAKGIKLGYF 380 (638)
T ss_pred CceEEEEeeEEEeCC--------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE-EECCCEEEEEe
Confidence 346999999999963 468999 99999999999999999999999999999999999999 8753 69999
Q ss_pred ecCC--CCC-CCcHHHHHh-cCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 001091 665 PQSS--WIQ-TGTIRENIL-FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1159)
Q Consensus 665 ~Q~p--wi~-~gTIreNIl-fG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~ 740 (1159)
+|++ .+. +.|+.+|+. +.....+++.+++++..++..+. ......+||||||||++||||+.++|+
T Consensus 381 ~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~----------~~~~~~~LSgGekqRl~La~~l~~~p~ 450 (638)
T PRK10636 381 AQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDK----------VTEETRRFSGGEKARLVLALIVWQRPN 450 (638)
T ss_pred cCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhH----------hcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 9975 333 458888874 22223345566677766664321 122346899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeCCeEE-EecChHHHHh
Q 001091 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE-QSGKYEDLIA 808 (1159)
Q Consensus 741 I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~-e~Gt~~eL~~ 808 (1159)
++||||||++||+.+.+.+ .+.+..+ . .|+|+|||+.+++.. ||+|++|++|+++ ..|+|++..+
T Consensus 451 lLlLDEPt~~LD~~~~~~l-~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 451 LLLLDEPTNHLDLDMRQAL-TEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred EEEEcCCCCCCCHHHHHHH-HHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 9999999999999997765 4566665 4 499999999999865 9999999999997 7899998754
No 331
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=1e-29 Score=265.44 Aligned_cols=145 Identities=24% Similarity=0.369 Sum_probs=125.9
Q ss_pred eeeEEEeCCcccccCCCcccccCCeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-EEEEEecCCCCCC
Q 001091 594 EAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-KKAYVPQSSWIQT 672 (1159)
Q Consensus 594 ~~~sf~w~~~~~~~~~~~~~L~~nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-~iayv~Q~pwi~~ 672 (1159)
.|++++|++ .+++++++++++||+++|+||+|||||||+++|.|.++|++|+| .++| .++|++|++.
T Consensus 4 ~~l~~~~~~--------~~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~q~~~--- 71 (177)
T cd03222 4 PDCVKRYGV--------FFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND-EWDGITPVYKPQYID--- 71 (177)
T ss_pred CCeEEEECC--------EEEEccCcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEE-EECCEEEEEEcccCC---
Confidence 467777753 34566678999999999999999999999999999999999999 8988 5899999753
Q ss_pred CcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 001091 673 GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752 (1159)
Q Consensus 673 gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD 752 (1159)
||||||||++||||+.++|++++|||||++||
T Consensus 72 ------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 72 ------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhc-C-CcEEEEEccCccccc-ccCEEEEEeCCeEEE
Q 001091 753 AHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1159)
Q Consensus 753 ~~t~~~if~~~i~g~l-~-~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e 799 (1159)
+++.+.+.+ .+..+. + ++|+|++||+++.+. .||+|++|+++-.+.
T Consensus 104 ~~~~~~l~~-~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~ 152 (177)
T cd03222 104 IEQRLNAAR-AIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVY 152 (177)
T ss_pred HHHHHHHHH-HHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccc
Confidence 999887654 555543 4 489999999999987 499999999876553
No 332
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=1.3e-29 Score=272.97 Aligned_cols=198 Identities=27% Similarity=0.407 Sum_probs=161.5
Q ss_pred cEEEeeeEEEeCCcccccCCC--cccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEE-EEEe
Q 001091 590 AIDIEAGEYAWDAREENFKKP--TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-AYVP 665 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~--~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~i-ayv~ 665 (1159)
.++++|++..|+.... .+.. ...++| ||+|++||.+++||+|||||||+-++|+|+++|++|+| ..+|.- .-..
T Consensus 4 ll~v~~l~k~f~~~~~-~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i-~f~g~~i~~~~ 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKG-FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEI-LFEGKDITKLS 81 (268)
T ss_pred eEEEeccEEEEecccc-cCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceE-EEcCcchhhcc
Confidence 4788999988875421 1111 357888 99999999999999999999999999999999999999 887752 1111
Q ss_pred cCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchH-HHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEE
Q 001091 666 QSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQD-IEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (1159)
Q Consensus 666 Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~d-l~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LL 744 (1159)
.+-..+++.+.++..+|.++ +...| ..|||||||||+||||+.-+|++++.
T Consensus 82 -----------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IARALal~P~liV~ 133 (268)
T COG4608 82 -----------------KEERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIARALALNPKLIVA 133 (268)
T ss_pred -----------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHHHHHhhCCcEEEe
Confidence 22224678899999998875 45555 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHHHHhhcchHHHHHH
Q 001091 745 DDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818 (1159)
Q Consensus 745 DDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~~l~ 818 (1159)
|||+||||.-+..+|.+ .+..+- .|-|.+++||+++..++ +|+|.||..|+|+|.|+-+++.+++...|.+.+
T Consensus 134 DEpvSaLDvSiqaqIln-LL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpYTk~L 209 (268)
T COG4608 134 DEPVSALDVSVQAQILN-LLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPYTKAL 209 (268)
T ss_pred cCchhhcchhHHHHHHH-HHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHHHHHH
Confidence 99999999999988865 444333 37899999999999977 999999999999999999999985556665543
No 333
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=1.5e-29 Score=310.49 Aligned_cols=193 Identities=19% Similarity=0.327 Sum_probs=160.0
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecC
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~ 667 (1159)
..++++|+++.|++ ..|++ |+++++||.++|+||+|||||||+++|.|+.+|.+|+| .++-+++|+||+
T Consensus 339 ~~l~~~~ls~~~~~---------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I-~~~~~i~y~~Q~ 408 (590)
T PRK13409 339 TLVEYPDLTKKLGD---------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV-DPELKISYKPQY 408 (590)
T ss_pred eEEEEcceEEEECC---------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EEeeeEEEeccc
Confidence 45899999999853 24888 99999999999999999999999999999999999999 777789999999
Q ss_pred CCC-CCCcHHHHHhcCC-CCC-hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEE
Q 001091 668 SWI-QTGTIRENILFGK-DMR-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (1159)
Q Consensus 668 pwi-~~gTIreNIlfG~-~~d-~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LL 744 (1159)
+-+ ++.|++||+.++. .++ +.+.+++++..+|.+..+ ....+||||||||++||||+.++|++|||
T Consensus 409 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~-----------~~~~~LSGGe~QRvaiAraL~~~p~llLL 477 (590)
T PRK13409 409 IKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLD-----------KNVKDLSGGELQRVAIAACLSRDADLYLL 477 (590)
T ss_pred ccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHh-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 754 6789999998863 222 334566777777653322 34457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEeCCeEEEecChH
Q 001091 745 DDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYE 804 (1159)
Q Consensus 745 DDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~ 804 (1159)
||||++||+.+...+. +.++.+. .++|+|+|||+++++. .||+|++|++ ++...|+..
T Consensus 478 DEPt~~LD~~~~~~l~-~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~~ 538 (590)
T PRK13409 478 DEPSAHLDVEQRLAVA-KAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHAS 538 (590)
T ss_pred eCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeecC
Confidence 9999999999977665 4676654 3799999999999875 5999999965 887777643
No 334
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=3.4e-29 Score=312.29 Aligned_cols=199 Identities=27% Similarity=0.421 Sum_probs=160.3
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--EEEEE
Q 001091 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYV 664 (1159)
Q Consensus 588 ~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--~iayv 664 (1159)
+..++++|++++|++ .+++++ ||+|++|++++|+||+|||||||+++|.|+++|++|+| .++. .++|+
T Consensus 317 ~~~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i-~~~~~~~i~y~ 387 (635)
T PRK11147 317 KIVFEMENVNYQIDG--------KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI-HCGTKLEVAYF 387 (635)
T ss_pred CceEEEeeeEEEECC--------eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE-EECCCcEEEEE
Confidence 346999999999963 358999 99999999999999999999999999999999999999 7743 59999
Q ss_pred ecCC--CCCCCcHHHHHhcCCC-C--C--hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHcc
Q 001091 665 PQSS--WIQTGTIRENILFGKD-M--R--QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1159)
Q Consensus 665 ~Q~p--wi~~gTIreNIlfG~~-~--d--~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~ 737 (1159)
+|++ ...+.|+.||+.++.+ . + +.+..+.++..++..+. ...+...||||||||++||||+.+
T Consensus 388 ~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGekqRl~la~al~~ 457 (635)
T PRK11147 388 DQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKR----------AMTPVKALSGGERNRLLLARLFLK 457 (635)
T ss_pred eCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHH----------HhChhhhCCHHHHHHHHHHHHHhc
Confidence 9985 3345699999987642 1 2 22334444444443221 122345799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEe-CCeEEE-ecChHHHHh
Q 001091 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMK-DGKIEQ-SGKYEDLIA 808 (1159)
Q Consensus 738 ~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~-~G~I~e-~Gt~~eL~~ 808 (1159)
+|+++||||||++||..+.+.+ .+.+... +.|+|+|||+.+++.. ||+|++|+ +|+|.+ .|+|++.++
T Consensus 458 ~p~lLlLDEPt~~LD~~~~~~l-~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 458 PSNLLILDEPTNDLDVETLELL-EELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred CCCEEEEcCCCCCCCHHHHHHH-HHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 9999999999999999996654 5566554 4599999999999864 99999998 899876 689988754
No 335
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=9.1e-30 Score=282.13 Aligned_cols=185 Identities=23% Similarity=0.318 Sum_probs=146.2
Q ss_pred eeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEE-----------ECC---
Q 001091 595 AGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK-----------VHG--- 659 (1159)
Q Consensus 595 ~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~-----------v~g--- 659 (1159)
|++++|+.. .+.++| + .+++||+++|+||+|||||||+++|.|.++|++|+| . ++|
T Consensus 5 ~~~~~y~~~-------~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I-~~~~~~~~~~~~~~g~~~ 75 (255)
T cd03236 5 EPVHRYGPN-------SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKF-DDPPDWDEILDEFRGSEL 75 (255)
T ss_pred CcceeecCc-------chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceE-eeccccchhhhhccCchh
Confidence 678888643 358899 9 499999999999999999999999999999999998 4 333
Q ss_pred ------------EEEEEecCCCCCCCcHHHHHhcCC-C-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHH
Q 001091 660 ------------KKAYVPQSSWIQTGTIRENILFGK-D-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1159)
Q Consensus 660 ------------~iayv~Q~pwi~~gTIreNIlfG~-~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQ 725 (1159)
.++|++|++.++..++.+||.+.- . -++++.+++++.+++.+ ....+..+|||||
T Consensus 76 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~ 144 (255)
T cd03236 76 QNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRH-----------VLDRNIDQLSGGE 144 (255)
T ss_pred hhhhHHhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHH
Confidence 257888887777666666665431 1 12356667777766543 2345667999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeEEEec
Q 001091 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 726 KQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~G 801 (1159)
|||++||||++++|+++||||||++||+.+.+.+. +.++.+. +++|+|++||+++.+.. ||+|++|+ |++.+.|
T Consensus 145 ~qrv~laral~~~p~illlDEPts~LD~~~~~~l~-~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 145 LQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAA-RLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 99999999999999999999999999999977665 4565554 47999999999999874 99999995 6666544
No 336
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.96 E-value=4.1e-29 Score=275.57 Aligned_cols=216 Identities=26% Similarity=0.410 Sum_probs=172.3
Q ss_pred CccEEEeeeEEEeCCcccccC---CCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----
Q 001091 588 DVAIDIEAGEYAWDAREENFK---KPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---- 659 (1159)
Q Consensus 588 ~~~I~~~~~sf~w~~~~~~~~---~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---- 659 (1159)
...++.+|+...|+-...-.+ ......++ |++.++||.++|||+||||||||-.+|++..++. |.| ..+|
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I-~F~G~~i~ 351 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEI-RFDGQDID 351 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceE-EECCcccc
Confidence 346788888888775421111 11235677 9999999999999999999999999999999876 998 7665
Q ss_pred ------------EEEEEecCCC---CCCCcHHHHHhcCCCC------ChHH---HHHHHHHhccchH-HHhccCCCCccc
Q 001091 660 ------------KKAYVPQSSW---IQTGTIRENILFGKDM------RQSF---YEEVLEGCALNQD-IEMWADGDLSVV 714 (1159)
Q Consensus 660 ------------~iayv~Q~pw---i~~gTIreNIlfG~~~------d~~~---y~~vl~ac~L~~d-l~~lp~Gd~T~I 714 (1159)
++-.|.|||+ =+..||.+-|.=|... +.+| ..++++..+|+++ ....|+
T Consensus 352 ~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPh------ 425 (534)
T COG4172 352 GLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPH------ 425 (534)
T ss_pred ccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCc------
Confidence 4789999997 3668999998766422 2344 4455556788764 445554
Q ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccc-cCEEEE
Q 001091 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLV 791 (1159)
Q Consensus 715 Ge~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~-aD~Iiv 791 (1159)
..|||||||||||||+.-+|++++|||||||||..+..+|++ .++.+- .|-+=++|+|++..++. ||+|+|
T Consensus 426 -----EFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~-LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viV 499 (534)
T COG4172 426 -----EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLD-LLRDLQQKHGLSYLFISHDLAVVRALCHRVIV 499 (534)
T ss_pred -----ccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHH-HHHHHHHHhCCeEEEEeccHHHHHHhhceEEE
Confidence 689999999999999999999999999999999999998876 444443 36799999999999976 999999
Q ss_pred EeCCeEEEecChHHHHhhcchHHHHH
Q 001091 792 MKDGKIEQSGKYEDLIADQNSELVRQ 817 (1159)
Q Consensus 792 l~~G~I~e~Gt~~eL~~~~~~~~~~l 817 (1159)
|++|+|+|+|+-+++.++...+|.+-
T Consensus 500 m~~GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 500 MRDGKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred EeCCEEeeeCCHHHHhcCCCcHHHHH
Confidence 99999999999999998666676543
No 337
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.96 E-value=1.1e-29 Score=309.76 Aligned_cols=194 Identities=20% Similarity=0.365 Sum_probs=154.6
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|++. ..+++ ||++++|++++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 268 ~l~~~~l~~-------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~i~~~~~~ 333 (510)
T PRK15439 268 VLTVEDLTG-------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRI-MLNGKEINALSTA 333 (510)
T ss_pred eEEEeCCCC-------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEE-EECCEECCCCCHH
Confidence 588888862 14889 99999999999999999999999999999999999999 8766
Q ss_pred -----EEEEEecCC----CCCCCcHHHHHhcCC----CC--C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 -----KKAYVPQSS----WIQTGTIRENILFGK----DM--R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 -----~iayv~Q~p----wi~~gTIreNIlfG~----~~--d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.++|+||++ ...+.|++||+.... .+ + +++.+++++.+++.. .....+...
T Consensus 334 ~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~ 403 (510)
T PRK15439 334 QRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF----------NHAEQAART 403 (510)
T ss_pred HHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC----------CCccCcccc
Confidence 389999985 334569999996320 11 1 112333444433320 123445678
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeEE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~ 798 (1159)
||||||||++||||+..+|+++||||||++||+.+.+.+.+ .++.+. +|+|+|+|||+++++.. ||+|++|++|+|+
T Consensus 404 LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~-~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~ 482 (510)
T PRK15439 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQ-LIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEIS 482 (510)
T ss_pred CCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999887655 555543 48999999999999865 9999999999999
Q ss_pred EecChHHHHh
Q 001091 799 QSGKYEDLIA 808 (1159)
Q Consensus 799 e~Gt~~eL~~ 808 (1159)
..|+.+++.+
T Consensus 483 ~~~~~~~~~~ 492 (510)
T PRK15439 483 GALTGAAINV 492 (510)
T ss_pred EEEccccCCH
Confidence 9998887754
No 338
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.96 E-value=1.6e-29 Score=307.37 Aligned_cols=192 Identities=23% Similarity=0.343 Sum_probs=153.1
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC-CCCcEEEECC-------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-ISGAAIKVHG------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~-~~G~i~~v~g------- 659 (1159)
..++++|+++.|++ ..++++ ||++++||+++|+||+|||||||+++|.|+.++ .+|+| .++|
T Consensus 259 ~~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i-~~~g~~~~~~~ 329 (490)
T PRK10938 259 PRIVLNNGVVSYND--------RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDL-TLFGRRRGSGE 329 (490)
T ss_pred ceEEEeceEEEECC--------eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeE-EEecccCCCCC
Confidence 46999999999963 358999 999999999999999999999999999998876 69998 7754
Q ss_pred -------EEEEEecCCCCC---CCcHHHHHhcCCC--------CC---hHHHHHHHHHhccchHHHhccCCCCccccCCC
Q 001091 660 -------KKAYVPQSSWIQ---TGTIRENILFGKD--------MR---QSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1159)
Q Consensus 660 -------~iayv~Q~pwi~---~gTIreNIlfG~~--------~d---~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G 718 (1159)
+++|++|++.++ ..|++||+.++.. .+ +++.++.++.++|.++. .....
T Consensus 330 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~ 399 (490)
T PRK10938 330 TIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRT----------ADAPF 399 (490)
T ss_pred CHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhh----------ccCch
Confidence 389999998653 2578888765410 11 23455666666654311 12345
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CC-cEEEEEccCcccccc--cCEEEEEeC
Q 001091 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQ-KTVLYTTHQLEFLDA--ADLVLVMKD 794 (1159)
Q Consensus 719 ~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~-kTvIlVTH~l~~l~~--aD~Iivl~~ 794 (1159)
.+||||||||++||||+..+|+++||||||++||+++.+.+.+ .++.+. ++ .|+|+|||+++.+.. ||++++|++
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~-~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~ 478 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRR-FVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPD 478 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHH-HHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecC
Confidence 6899999999999999999999999999999999999887754 565554 34 469999999999864 899999999
Q ss_pred CeEEEe
Q 001091 795 GKIEQS 800 (1159)
Q Consensus 795 G~I~e~ 800 (1159)
|+|++.
T Consensus 479 G~i~~~ 484 (490)
T PRK10938 479 GDIYRY 484 (490)
T ss_pred CceEEe
Confidence 998864
No 339
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=3e-29 Score=261.74 Aligned_cols=148 Identities=29% Similarity=0.456 Sum_probs=120.6
Q ss_pred CcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE--------EEEEecCCCCCCCcHHHHHh
Q 001091 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------KAYVPQSSWIQTGTIRENIL 680 (1159)
Q Consensus 610 ~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~--------iayv~Q~pwi~~gTIreNIl 680 (1159)
..+.++| ||++++|++++|+|||||||||||++|++ .+|++ .+.+. ++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v-~~~~~~~~~~~~~~~~~~q-------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKA-RLISFLPKFSRNKLIFIDQ-------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcE-EECCcccccccccEEEEhH--------------
Confidence 4678999 99999999999999999999999999974 58888 77654 445444
Q ss_pred cCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHHH
Q 001091 681 FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN--SDVYIFDDPFSAVDAHTGTH 758 (1159)
Q Consensus 681 fG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~--a~I~LLDDp~SALD~~t~~~ 758 (1159)
.++++..+|. +. ..+++..+||||||||++||||++++ |+++||||||++||+++.+.
T Consensus 68 ----------~~~l~~~~L~---------~~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~ 127 (176)
T cd03238 68 ----------LQFLIDVGLG---------YL-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQ 127 (176)
T ss_pred ----------HHHHHHcCCC---------cc-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHH
Confidence 2344444332 11 24667889999999999999999999 99999999999999999887
Q ss_pred HHHHHHhhhc-CCcEEEEEccCcccccccCEEEEEeCCeE
Q 001091 759 LFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1159)
Q Consensus 759 if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~Iivl~~G~I 797 (1159)
+.+ .++.+. +|+|+|+|||+++.+..||+|++|++|+.
T Consensus 128 l~~-~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 128 LLE-VIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred HHH-HHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 655 565554 58999999999999988999999976543
No 340
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=1.3e-29 Score=266.94 Aligned_cols=197 Identities=23% Similarity=0.367 Sum_probs=164.5
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE---------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~--------- 660 (1159)
.++++++.++.. -..++| ||++++||+++++||+|+||||++++|.|.|+|++|+| ..+|.
T Consensus 5 L~v~~l~k~FGG--------l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v-~~~G~~it~l~p~~ 75 (250)
T COG0411 5 LEVRGLSKRFGG--------LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV-IFRGRDITGLPPHR 75 (250)
T ss_pred eeeccceeecCC--------EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceE-EECCcccCCCCHHH
Confidence 567888888864 457899 99999999999999999999999999999999999999 88773
Q ss_pred -----EEEEecCCCCCC-CcHHHHHhcCCC-------------C---Ch---HHHHHHHHHhccchHHHhccCCCCcccc
Q 001091 661 -----KAYVPQSSWIQT-GTIRENILFGKD-------------M---RQ---SFYEEVLEGCALNQDIEMWADGDLSVVG 715 (1159)
Q Consensus 661 -----iayv~Q~pwi~~-gTIreNIlfG~~-------------~---d~---~~y~~vl~ac~L~~dl~~lp~Gd~T~IG 715 (1159)
++--.|.+-+|. .|+-||++-|.. + .+ ++-.+.++.++|.+ .-.
T Consensus 76 iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~-----------~a~ 144 (250)
T COG0411 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGE-----------LAD 144 (250)
T ss_pred HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCch-----------hhc
Confidence 789999999876 599999998732 1 11 22233334444433 334
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccc-cccCEEEEE
Q 001091 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFL-DAADLVLVM 792 (1159)
Q Consensus 716 e~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l-~~aD~Iivl 792 (1159)
+...+||+||+.|+.||||+..+|+++|||||.+++.+.-...+.+ .|..+.+ |.|+++|-|+++.+ ..||+|+||
T Consensus 145 ~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~-~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl 223 (250)
T COG0411 145 RPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAE-LIRELRDRGGVTILLIEHDMKLVMGLADRIVVL 223 (250)
T ss_pred chhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEEeccHHHhhhccEEEec
Confidence 6677999999999999999999999999999999999998887765 5666664 58999999999986 569999999
Q ss_pred eCCeEEEecChHHHHh
Q 001091 793 KDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 793 ~~G~I~e~Gt~~eL~~ 808 (1159)
+.|+++.+|+++|..+
T Consensus 224 ~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 224 NYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcCcccCCHHHHhc
Confidence 9999999999999987
No 341
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=9.4e-29 Score=307.73 Aligned_cols=196 Identities=24% Similarity=0.369 Sum_probs=153.8
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--EEEEEecC
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQS 667 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--~iayv~Q~ 667 (1159)
|+++|++++|+. .++++| ||+|++|++++|+||+|||||||+++|.|+++|++|+| .++| +++|++|+
T Consensus 2 i~i~nls~~~g~--------~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I-~~~~~~~i~~~~q~ 72 (638)
T PRK10636 2 IVFSSLQIRRGV--------RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSY-TFPGNWQLAWVNQE 72 (638)
T ss_pred EEEEEEEEEeCC--------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecCCCEEEEEecC
Confidence 689999999964 468999 99999999999999999999999999999999999999 8876 58999997
Q ss_pred CCCCCCcHHHHHhcCCC-C--------------C-------------------hHHHHHHHHHhccchHHHhccCCCCcc
Q 001091 668 SWIQTGTIRENILFGKD-M--------------R-------------------QSFYEEVLEGCALNQDIEMWADGDLSV 713 (1159)
Q Consensus 668 pwi~~gTIreNIlfG~~-~--------------d-------------------~~~y~~vl~ac~L~~dl~~lp~Gd~T~ 713 (1159)
+..+..|+.+++.-+.. + + +++.+++++..++.+ ..
T Consensus 73 ~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~----------~~ 142 (638)
T PRK10636 73 TPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSN----------EQ 142 (638)
T ss_pred CCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCc----------hh
Confidence 65555677666542210 0 0 011122222222210 11
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEE
Q 001091 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVM 792 (1159)
Q Consensus 714 IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl 792 (1159)
......+||||||||++||||+..+||++||||||++||+.+...+. +.+... +.|+|+|||+.+++.. ||+|++|
T Consensus 143 ~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~-~~L~~~--~~tviivsHd~~~l~~~~d~i~~L 219 (638)
T PRK10636 143 LERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLE-KWLKSY--QGTLILISHDRDFLDPIVDKIIHI 219 (638)
T ss_pred hcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHH-HHHHhC--CCeEEEEeCCHHHHHHhcCEEEEE
Confidence 23345689999999999999999999999999999999999977654 455543 5799999999999865 9999999
Q ss_pred eCCeEE-EecChHHHHh
Q 001091 793 KDGKIE-QSGKYEDLIA 808 (1159)
Q Consensus 793 ~~G~I~-e~Gt~~eL~~ 808 (1159)
++|++. ..|+|++...
T Consensus 220 ~~G~i~~~~g~~~~~~~ 236 (638)
T PRK10636 220 EQQSLFEYTGNYSSFEV 236 (638)
T ss_pred eCCEEEEecCCHHHHHH
Confidence 999996 5799988765
No 342
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.1e-28 Score=287.74 Aligned_cols=194 Identities=25% Similarity=0.375 Sum_probs=162.3
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE-------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~------- 660 (1159)
..++++|++.+|+. ...|++ ||++.+||.+|++|.+|+|||||+|.|.|-|+|++|+| .++|+
T Consensus 7 ~ll~~~~i~K~Fgg--------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I-~~~G~~~~~~sp 77 (500)
T COG1129 7 PLLELRGISKSFGG--------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI-LIDGKPVAFSSP 77 (500)
T ss_pred ceeeeecceEEcCC--------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceE-EECCEEccCCCH
Confidence 35889999999974 478999 99999999999999999999999999999999999999 99984
Q ss_pred -------EEEEecCCCC-CCCcHHHHHhcCCCCC-------hHH----HHHHHHHhccchHHHhccCCCCccccCCCCCC
Q 001091 661 -------KAYVPQSSWI-QTGTIRENILFGKDMR-------QSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1159)
Q Consensus 661 -------iayv~Q~pwi-~~gTIreNIlfG~~~d-------~~~----y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~L 721 (1159)
|+.|.|++-| .|-||.|||-+|++.. ..+ .+++++.-++. .. ....-.+|
T Consensus 78 ~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~-------~~----~~~~v~~L 146 (500)
T COG1129 78 RDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD-------ID----PDTLVGDL 146 (500)
T ss_pred HHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC-------CC----hhhhhhhC
Confidence 8999999776 6789999999887632 222 22222222221 11 33445679
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccc-cccCEEEEEeCCeEEE
Q 001091 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQ 799 (1159)
Q Consensus 722 SGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e 799 (1159)
|+||||-|+||||++.+++|+|||||||||+.+-.+++|+ .++.+. +|.++|+|||+++.+ .-||+|.||.||+.+.
T Consensus 147 siaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~-~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~ 225 (500)
T COG1129 147 SIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD-LIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG 225 (500)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEee
Confidence 9999999999999999999999999999999999999987 466555 699999999999886 5599999999999998
Q ss_pred ecCh
Q 001091 800 SGKY 803 (1159)
Q Consensus 800 ~Gt~ 803 (1159)
.++.
T Consensus 226 ~~~~ 229 (500)
T COG1129 226 TRPT 229 (500)
T ss_pred eccc
Confidence 7773
No 343
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.6e-29 Score=255.47 Aligned_cols=197 Identities=28% Similarity=0.454 Sum_probs=166.1
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE---------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~--------- 660 (1159)
|+++|++.+|.. ..++.+ |++||+|.+++++||+|+||||||+.+.+++++.+|+| .++|.
T Consensus 2 I~i~nv~K~y~~--------~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i-~i~g~~~~~~~s~~ 72 (252)
T COG4604 2 ITIENVSKSYGT--------KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI-TIDGLELTSTPSKE 72 (252)
T ss_pred eeehhhhHhhCC--------EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceE-EEeeeecccCChHH
Confidence 678899999864 578999 99999999999999999999999999999999999999 99883
Q ss_pred ----EEEEecCCCCC-CCcHHHHHhcCC-CC--------ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHH
Q 001091 661 ----KAYVPQSSWIQ-TGTIRENILFGK-DM--------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1159)
Q Consensus 661 ----iayv~Q~pwi~-~gTIreNIlfG~-~~--------d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQK 726 (1159)
++..-|+..+. +-||||=+-||+ || |+...+++++--.|+ .+.+.+. ..||||||
T Consensus 73 LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~----~l~dryL-------d~LSGGQr 141 (252)
T COG4604 73 LAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLE----DLSDRYL-------DELSGGQR 141 (252)
T ss_pred HHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhccc----chHHHhH-------Hhcccchh
Confidence 57788887775 569999999997 55 334455555544443 3333332 36999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEeCCeEEEecCh
Q 001091 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803 (1159)
Q Consensus 727 QRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~ 803 (1159)
||.=+|-.+.+|.|-++||||+.+||-..+..+++. ++.+- -|||+|+|-|...|.. .+|+|+-|+||+++.+|++
T Consensus 142 QRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~-Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~ 220 (252)
T COG4604 142 QRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKI-LRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSP 220 (252)
T ss_pred hhhhhheeeeccCcEEEecCcccccchHHHHHHHHH-HHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCH
Confidence 999999999999999999999999999988888763 44433 2899999999999975 5999999999999999999
Q ss_pred HHHHh
Q 001091 804 EDLIA 808 (1159)
Q Consensus 804 ~eL~~ 808 (1159)
+|+++
T Consensus 221 ~eii~ 225 (252)
T COG4604 221 DEIIQ 225 (252)
T ss_pred HHhcC
Confidence 99987
No 344
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.96 E-value=6.9e-29 Score=301.68 Aligned_cols=200 Identities=19% Similarity=0.294 Sum_probs=153.0
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE-------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~------- 660 (1159)
..|+++|+++.+ .+++++ ||++++||+++|+||+|||||||+++|.|+.+|.+|+| .++|.
T Consensus 249 ~~i~~~~l~~~~----------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~ 317 (491)
T PRK10982 249 VILEVRNLTSLR----------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTI-TLHGKKINNHNA 317 (491)
T ss_pred cEEEEeCccccc----------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEE-EECCEECCCCCH
Confidence 368999998862 247999 99999999999999999999999999999999999999 88761
Q ss_pred -------EEEEecCCC----CCCCcHHHHHhcC-----CC----CChHHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 661 -------KAYVPQSSW----IQTGTIRENILFG-----KD----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 661 -------iayv~Q~pw----i~~gTIreNIlfG-----~~----~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
++|++|++- ..+.|+++|+.+. .. .+....++ ...+-++.+.-+++ .......+
T Consensus 318 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~-~~~~~~~~ 391 (491)
T PRK10982 318 NEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSMRVKTP-GHRTQIGS 391 (491)
T ss_pred HHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhcCccCC-Cccccccc
Confidence 789999852 3456787774332 11 11111111 11122233321111 13456678
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeCCeEE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~ 798 (1159)
||||||||++||||+.++|+|+||||||++||+.+.+.+.+ .+..+. +|+|+|+|||+++.+. .||++++|++|+++
T Consensus 392 LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~-~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQ-LIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVA 470 (491)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHH-HHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999888765 565543 5899999999999875 59999999999999
Q ss_pred EecChHHH
Q 001091 799 QSGKYEDL 806 (1159)
Q Consensus 799 e~Gt~~eL 806 (1159)
..++.+++
T Consensus 471 ~~~~~~~~ 478 (491)
T PRK10982 471 GIVDTKTT 478 (491)
T ss_pred EEEccccC
Confidence 88766543
No 345
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=2.3e-28 Score=304.88 Aligned_cols=203 Identities=23% Similarity=0.337 Sum_probs=153.7
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--EEEEEec
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQ 666 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--~iayv~Q 666 (1159)
.|+++|++++|+. .++++| ||++++|++++|+||+|||||||+++|.|+++|++|+| .++| .++|++|
T Consensus 3 ~l~i~~ls~~~~~--------~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I-~~~~~~~~~~l~q 73 (635)
T PRK11147 3 LISIHGAWLSFSD--------APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRI-IYEQDLIVARLQQ 73 (635)
T ss_pred EEEEeeEEEEeCC--------ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEE-EeCCCCEEEEecc
Confidence 3789999999963 368999 99999999999999999999999999999999999999 8877 4789999
Q ss_pred CCCC-CCCcHHHHHhcCCCC-------------------ChH---HHHHH---HHHh---ccchH----HHhccCCCCcc
Q 001091 667 SSWI-QTGTIRENILFGKDM-------------------RQS---FYEEV---LEGC---ALNQD----IEMWADGDLSV 713 (1159)
Q Consensus 667 ~pwi-~~gTIreNIlfG~~~-------------------d~~---~y~~v---l~ac---~L~~d----l~~lp~Gd~T~ 713 (1159)
.+.. ..+|+.+++..+... .++ .+.++ ++.. ..... ++.+ |..
T Consensus 74 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~-- 149 (635)
T PRK11147 74 DPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--GLD-- 149 (635)
T ss_pred CCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--CCC--
Confidence 8643 347888876433210 000 00000 0000 00001 1111 111
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEE
Q 001091 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVM 792 (1159)
Q Consensus 714 IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl 792 (1159)
......+|||||||||+||||+..+||++||||||++||+++.+.+. +.+..+ +.|+|+|||+.+++.. ||+|++|
T Consensus 150 ~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~-~~L~~~--~~tvlivsHd~~~l~~~~d~i~~L 226 (635)
T PRK11147 150 PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLE-GFLKTF--QGSIIFISHDRSFIRNMATRIVDL 226 (635)
T ss_pred CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHH-HHHHhC--CCEEEEEeCCHHHHHHhcCeEEEE
Confidence 12345689999999999999999999999999999999999987664 456554 3699999999999865 9999999
Q ss_pred eCCeEE-EecChHHHHh
Q 001091 793 KDGKIE-QSGKYEDLIA 808 (1159)
Q Consensus 793 ~~G~I~-e~Gt~~eL~~ 808 (1159)
++|+++ ..|+|++..+
T Consensus 227 ~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 227 DRGKLVSYPGNYDQYLL 243 (635)
T ss_pred ECCEEEEecCCHHHHHH
Confidence 999997 4699988765
No 346
>PLN03140 ABC transporter G family member; Provisional
Probab=99.96 E-value=3.2e-28 Score=322.53 Aligned_cols=207 Identities=26% Similarity=0.420 Sum_probs=165.1
Q ss_pred cEEEeeeEEEeCCcccc-----cCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc--CCCCcEEEECC--
Q 001091 590 AIDIEAGEYAWDAREEN-----FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--RISGAAIKVHG-- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~-----~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~--~~~G~i~~v~g-- 659 (1159)
.+.++|+++..+...+. ......+|+| |+++++|++++|+||+||||||||++|.|..+ +.+|+| .++|
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I-~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDI-RISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceE-EECCcc
Confidence 58889999887532110 0123468999 99999999999999999999999999999976 378998 8876
Q ss_pred --------EEEEEecCCCC-CCCcHHHHHhcCC------CCCh-H---HHHHHHHHhccchHHHhccCCCCccccCCC-C
Q 001091 660 --------KKAYVPQSSWI-QTGTIRENILFGK------DMRQ-S---FYEEVLEGCALNQDIEMWADGDLSVVGERG-I 719 (1159)
Q Consensus 660 --------~iayv~Q~pwi-~~gTIreNIlfG~------~~d~-~---~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G-~ 719 (1159)
.+|||+|++.+ .+.|++||+.|+. ..++ + +.+++++..+|.+ -.++.+|..| .
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~-------~~~~~vg~~~~~ 1018 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN-------LKDAIVGLPGVT 1018 (1470)
T ss_pred CChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh-------HhCCccCCCCCC
Confidence 27999999755 4579999998852 1222 2 3456677666643 2367777655 5
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccc--ccccCEEEEEeC-C
Q 001091 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEF--LDAADLVLVMKD-G 795 (1159)
Q Consensus 720 ~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~--l~~aD~Iivl~~-G 795 (1159)
.||||||||++||||+..+|+|++||||||+||++++..+.+ .++.+. +|+|+|++||+++. ...+|++++|++ |
T Consensus 1019 ~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~-~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG 1097 (1470)
T PLN03140 1019 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1097 (1470)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCC
Confidence 799999999999999999999999999999999999887765 455543 58999999999984 577999999986 8
Q ss_pred eEEEecChHH
Q 001091 796 KIEQSGKYED 805 (1159)
Q Consensus 796 ~I~e~Gt~~e 805 (1159)
++++.|+.++
T Consensus 1098 ~~v~~G~~~~ 1107 (1470)
T PLN03140 1098 QVIYSGPLGR 1107 (1470)
T ss_pred EEEEECCccc
Confidence 9999998653
No 347
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.95 E-value=5.9e-28 Score=275.39 Aligned_cols=190 Identities=29% Similarity=0.448 Sum_probs=162.1
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE-------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~------- 660 (1159)
..+++++.+..|+. ...+++ ||++++||+.|+.|++|+|||||++.|.|.|+|++|+| .++|+
T Consensus 3 ~~l~~~~itK~f~~--------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI-~v~G~~v~~~sP 73 (501)
T COG3845 3 PALEMRGITKRFPG--------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI-RVDGKEVRIKSP 73 (501)
T ss_pred ceEEEeccEEEcCC--------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceE-EECCEEeccCCH
Confidence 46899999999973 356778 99999999999999999999999999999999999999 99984
Q ss_pred -------EEEEecCCCCC-CCcHHHHHhcCCCC------C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCC
Q 001091 661 -------KAYVPQSSWIQ-TGTIRENILFGKDM------R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1159)
Q Consensus 661 -------iayv~Q~pwi~-~gTIreNIlfG~~~------d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LS 722 (1159)
|+.|.|.+-++ +-|+.|||..|.+- | +++.++..+..+|.-|.+ ++-..||
T Consensus 74 ~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~-----------~~V~dLs 142 (501)
T COG3845 74 RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-----------AKVADLS 142 (501)
T ss_pred HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc-----------ceeecCC
Confidence 89999998875 56999999999863 2 345555556566554433 4456799
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeEEE
Q 001091 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1159)
Q Consensus 723 GGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e 799 (1159)
-|+||||.|-+|||++|+++|||||||-|-|.-.+++|+- ++.+. .|||||+|||+++.+.. ||++-||.+|+++.
T Consensus 143 VG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~-l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 143 VGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEI-LRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred cchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 9999999999999999999999999999999999999874 44443 59999999999998755 99999999999864
No 348
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=9.9e-28 Score=247.16 Aligned_cols=140 Identities=41% Similarity=0.645 Sum_probs=123.7
Q ss_pred EeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE-----------
Q 001091 593 IEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----------- 660 (1159)
Q Consensus 593 ~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~----------- 660 (1159)
++|++|.|+. .+.+++ |+++++|+.++|+|++|||||||+++|.|++++.+|++ .++|.
T Consensus 2 ~~~~~~~~~~--------~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i-~~~~~~~~~~~~~~~~ 72 (157)
T cd00267 2 IENLSFRYGG--------RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEI-LIDGKDIAKLPLEELR 72 (157)
T ss_pred eEEEEEEeCC--------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEE-EECCEEcccCCHHHHH
Confidence 6789999864 358999 99999999999999999999999999999999999999 88773
Q ss_pred --EEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 001091 661 --KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738 (1159)
Q Consensus 661 --iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~ 738 (1159)
++|++| ||||||||++||||+..+
T Consensus 73 ~~i~~~~q------------------------------------------------------lS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 73 RRIGYVPQ------------------------------------------------------LSGGQRQRVALARALLLN 98 (157)
T ss_pred hceEEEee------------------------------------------------------CCHHHHHHHHHHHHHhcC
Confidence 556665 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEccCcccccc-cCEEEEEeCCe
Q 001091 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1159)
Q Consensus 739 a~I~LLDDp~SALD~~t~~~if~~~i~g~l~-~kTvIlVTH~l~~l~~-aD~Iivl~~G~ 796 (1159)
|++++|||||++||..+...+. +.+....+ ++|++++||+++.++. ||++++|++|+
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~-~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLL-ELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999999977654 45655433 5899999999999988 69999999975
No 349
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=4.2e-27 Score=281.73 Aligned_cols=206 Identities=25% Similarity=0.367 Sum_probs=161.5
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--EEEEEec
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQ 666 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--~iayv~Q 666 (1159)
.|.++|++++|+. .+.+++ |+++.+|+++++||++|+||||||++|.|+..|.+|+| ...+ +++|++|
T Consensus 3 ~i~~~~ls~~~g~--------~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i-~~~~~~~v~~l~Q 73 (530)
T COG0488 3 MITLENLSLAYGD--------RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV-TRPKGLRVGYLSQ 73 (530)
T ss_pred eEEEeeeEEeeCC--------ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeE-eecCCceEEEeCC
Confidence 4889999999953 578999 99999999999999999999999999999999999999 7766 7999999
Q ss_pred CCCCCCC-cHHHHHhcCCCCC---hHHHHHHHHH---------------------hccchHHHhccC--CCCccccCCCC
Q 001091 667 SSWIQTG-TIRENILFGKDMR---QSFYEEVLEG---------------------CALNQDIEMWAD--GDLSVVGERGI 719 (1159)
Q Consensus 667 ~pwi~~g-TIreNIlfG~~~d---~~~y~~vl~a---------------------c~L~~dl~~lp~--Gd~T~IGe~G~ 719 (1159)
+|-.... |++|.++-|..-- ..+|+++... -.++.+++..-. |...+ ...-.
T Consensus 74 ~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~ 152 (530)
T COG0488 74 EPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVS 152 (530)
T ss_pred CCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchh
Confidence 9998865 9999999875310 1122222110 001112221111 22222 23446
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeCCeEE
Q 001091 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1159)
Q Consensus 720 ~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~ 798 (1159)
+||||||-|++||||+..+||++||||||..||..+-+.+ ++.+.. .+| |+|+|||+-+||.. |++|+-+++|++.
T Consensus 153 ~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WL-e~~L~~-~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~ 229 (530)
T COG0488 153 SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWL-EDYLKR-YPG-TVIVVSHDRYFLDNVATHILELDRGKLT 229 (530)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHH-HHHHHh-CCC-cEEEEeCCHHHHHHHhhheEEecCCcee
Confidence 8999999999999999999999999999999999998776 444443 356 99999999999977 9999999999875
Q ss_pred -EecChHHHHh
Q 001091 799 -QSGKYEDLIA 808 (1159)
Q Consensus 799 -e~Gt~~eL~~ 808 (1159)
..|.|+..++
T Consensus 230 ~y~Gny~~~~~ 240 (530)
T COG0488 230 PYKGNYSSYLE 240 (530)
T ss_pred EecCCHHHHHH
Confidence 6799998876
No 350
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.95 E-value=1.6e-27 Score=317.27 Aligned_cols=189 Identities=21% Similarity=0.250 Sum_probs=154.5
Q ss_pred cccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCc----cCCCCcEEEECC------------EEEEEecCCCCC-C
Q 001091 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI----PRISGAAIKVHG------------KKAYVPQSSWIQ-T 672 (1159)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~----~~~~G~i~~v~g------------~iayv~Q~pwi~-~ 672 (1159)
..+|+| |+++++||+++|+||+||||||||++|.|.. ++.+|+| .++| .++||+|++.++ +
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I-~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVI-TYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEE-EECCEehHHHHhhcCceeEEeccccccCCC
Confidence 568999 9999999999999999999999999999986 4689999 8876 289999987655 5
Q ss_pred CcHHHHHhcCCC----------CChHHHH-----HHHHHhccchHHHhccCCCCccccCC-CCCCCHHHHHHHHHHHHHc
Q 001091 673 GTIRENILFGKD----------MRQSFYE-----EVLEGCALNQDIEMWADGDLSVVGER-GINLSGGQKQRIQLARAVY 736 (1159)
Q Consensus 673 gTIreNIlfG~~----------~d~~~y~-----~vl~ac~L~~dl~~lp~Gd~T~IGe~-G~~LSGGQKQRIaLARAly 736 (1159)
.|++||+.|+.. .+++.+. .+++..+| .+--+|.||++ ...|||||||||+||||+.
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL-------SHTRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCc-------ccccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 699999998621 2222221 23333333 34457888763 5689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcc-c-ccccCEEEEEeCCeEEEecChHHHHh
Q 001091 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLE-F-LDAADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 737 ~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~-~-l~~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
.+|+|++||||||+||+.++..+.+ .++.+. .|+|+|+++|++. . ...+|+|++|++|+++..|+.+++.+
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~-~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~ 300 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIR-ALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQ 300 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHH-HHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHH
Confidence 9999999999999999999888765 566654 3899999999974 3 46699999999999999999988754
No 351
>PLN03140 ABC transporter G family member; Provisional
Probab=99.95 E-value=1.2e-27 Score=317.10 Aligned_cols=197 Identities=22% Similarity=0.352 Sum_probs=157.4
Q ss_pred CcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCC---CCcEEEECC----------EEEEEecCCCC-CCCc
Q 001091 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVHG----------KKAYVPQSSWI-QTGT 674 (1159)
Q Consensus 610 ~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~---~G~i~~v~g----------~iayv~Q~pwi-~~gT 674 (1159)
...+|+| |+.+++|++++|+||+||||||||++|.|.++|. +|+| .++| .++||+|++.+ .+.|
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I-~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEI-TYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEE-EECCEechhhcccceeEEecccccCCCcCc
Confidence 3568999 9999999999999999999999999999999988 9999 8876 48999999755 5679
Q ss_pred HHHHHhcCCC-------CC-------hH---------HHHHHHHHhcc---------chHHH--hccCCCCccccCCC-C
Q 001091 675 IRENILFGKD-------MR-------QS---------FYEEVLEGCAL---------NQDIE--MWADGDLSVVGERG-I 719 (1159)
Q Consensus 675 IreNIlfG~~-------~d-------~~---------~y~~vl~ac~L---------~~dl~--~lp~Gd~T~IGe~G-~ 719 (1159)
++||+.|+.. ++ ++ +.+...+++.. +.-++ .|++-.+|.||++. .
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 9999998521 11 11 11112222221 11122 24555688898754 5
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcc--cccccCEEEEEeCC
Q 001091 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLE--FLDAADLVLVMKDG 795 (1159)
Q Consensus 720 ~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~--~l~~aD~Iivl~~G 795 (1159)
.|||||||||+||||+..+|++++|||||++||+.++..+.+ +++.+. .|+|+|+++||+. ....+|+|++|++|
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~-~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVK-CLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHH-HHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 799999999999999999999999999999999999988874 566653 4899999999973 45779999999999
Q ss_pred eEEEecChHHHHh
Q 001091 796 KIEQSGKYEDLIA 808 (1159)
Q Consensus 796 ~I~e~Gt~~eL~~ 808 (1159)
++++.|+.+++.+
T Consensus 415 ~ivy~G~~~~~~~ 427 (1470)
T PLN03140 415 QIVYQGPRDHILE 427 (1470)
T ss_pred eEEEeCCHHHHHH
Confidence 9999999998864
No 352
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=1.7e-27 Score=244.30 Aligned_cols=190 Identities=26% Similarity=0.347 Sum_probs=154.9
Q ss_pred CcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE-------------EEEEecCCC---CCC
Q 001091 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYVPQSSW---IQT 672 (1159)
Q Consensus 610 ~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~-------------iayv~Q~pw---i~~ 672 (1159)
++++|++ +++|++|+++.|+|.+|+|||||+++|.|..+|++|+| .++|. ++-|.|+|- -.+
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I-~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~ 96 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQI-LIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE 96 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceE-EECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence 4688999 99999999999999999999999999999999999999 89872 678999996 467
Q ss_pred CcHHHHHhcCCCCChHH-HHHHHH---HhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCC
Q 001091 673 GTIRENILFGKDMRQSF-YEEVLE---GCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF 748 (1159)
Q Consensus 673 gTIreNIlfG~~~d~~~-y~~vl~---ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~ 748 (1159)
.||.||+.....-.+.| +...+. ...-.+-++.++.|.+-..+.+-.-|||||||=++|+-|..+.|+|++|||=|
T Consensus 97 lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHT 176 (263)
T COG1101 97 LTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHT 176 (263)
T ss_pred ccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchh
Confidence 89999998632100000 111111 11122347788899999999998999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhhcC-CcEEEEEccCccc-ccccCEEEEEeCCeEEEe
Q 001091 749 SAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEF-LDAADLVLVMKDGKIEQS 800 (1159)
Q Consensus 749 SALD~~t~~~if~~~i~g~l~-~kTvIlVTH~l~~-l~~aD~Iivl~~G~I~e~ 800 (1159)
+||||.+++.+++..-+=.-+ +-|.++|||+++- +..-+|.|+|++|+|+..
T Consensus 177 AALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 177 AALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred hcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 999999999887754322333 4599999999975 788999999999999964
No 353
>PRK13409 putative ATPase RIL; Provisional
Probab=99.95 E-value=1.7e-27 Score=292.53 Aligned_cols=177 Identities=27% Similarity=0.349 Sum_probs=145.0
Q ss_pred eEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEE-----------ECC----
Q 001091 596 GEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK-----------VHG---- 659 (1159)
Q Consensus 596 ~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~-----------v~g---- 659 (1159)
.+..|... ...|++ + .+++|++++|+||+|||||||+++|.|+++|++|+| . ++|
T Consensus 79 ~~~~yg~~-------~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i-~~~~~~~~~~~~~~G~~l~ 149 (590)
T PRK13409 79 PVHRYGVN-------GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDY-EEEPSWDEVLKRFRGTELQ 149 (590)
T ss_pred ceEEecCC-------ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccc-cCCCcHHHHHHHhCChHHH
Confidence 56777532 468999 9 899999999999999999999999999999999998 5 443
Q ss_pred -----------EE----EEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHH
Q 001091 660 -----------KK----AYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1159)
Q Consensus 660 -----------~i----ayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGG 724 (1159)
++ .|++|.|+++.+|++||+.+.. ..++.+++++..+|.... ...-.+||||
T Consensus 150 ~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~l~~~~-----------~~~~~~LSgG 216 (590)
T PRK13409 150 NYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLGLENIL-----------DRDISELSGG 216 (590)
T ss_pred HHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcCCchhh-----------cCChhhCCHH
Confidence 13 4566678888999999997531 235667777777765432 2334579999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeCC
Q 001091 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDG 795 (1159)
Q Consensus 725 QKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G 795 (1159)
||||++||||+.++|++||||||||+||++..+.+.+ .++.+.+|+|+|+|||+++.+.. ||+|++|++|
T Consensus 217 e~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~-~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 217 ELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVAR-LIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999887755 56665558999999999999865 9999999863
No 354
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=7.4e-27 Score=246.66 Aligned_cols=185 Identities=28% Similarity=0.376 Sum_probs=159.5
Q ss_pred cccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEec--CCCCCCCcHHHHHhcC-----
Q 001091 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQ--SSWIQTGTIRENILFG----- 682 (1159)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q--~pwi~~gTIreNIlfG----- 682 (1159)
...|+| ||++++||.++|+|++||||||||+.|.|-++|++|+| .++|++++.-- .-.-.+.|-||||.+-
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v-~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G 118 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV-KVTGKVAPLIELGAGFDPELTGRENIYLRGLILG 118 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceE-EEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence 468999 99999999999999999999999999999999999999 99999985543 2345677999999753
Q ss_pred --CCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH
Q 001091 683 --KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760 (1159)
Q Consensus 683 --~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if 760 (1159)
++.-+++++++++=+.|.++++. .-.+.|-|.+.|++.|=|...+|||||+||.++..|+.=.++-.
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~~-----------PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~ 187 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFIDQ-----------PVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL 187 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhC-----------chhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH
Confidence 22346789999998888877653 34689999999999999999999999999999999998766554
Q ss_pred HHHHhhh-cCCcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHHHHh
Q 001091 761 KQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 761 ~~~i~g~-l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
++ ++.+ .+++|+|+|||+++.+++ ||+++.|++|+|...|+.+|..+
T Consensus 188 ~r-l~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 188 ER-LNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred HH-HHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 43 3444 678999999999999865 99999999999999999999887
No 355
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.5e-27 Score=249.64 Aligned_cols=195 Identities=24% Similarity=0.382 Sum_probs=155.7
Q ss_pred CCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC------
Q 001091 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------ 659 (1159)
Q Consensus 587 ~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g------ 659 (1159)
.+..|+++|++..|.+ +++|+| |.+|++||.-+|+||+||||||||+.+.|+++|.+|.+ .+-|
T Consensus 28 ~~~li~l~~v~v~r~g--------k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~-~~~G~~~G~~ 98 (257)
T COG1119 28 NEPLIELKNVSVRRNG--------KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV-TLLGRRFGKG 98 (257)
T ss_pred CcceEEecceEEEECC--------EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCce-eeeeeeccCC
Confidence 4456999999999964 589999 99999999999999999999999999999999999988 5544
Q ss_pred --------EEEEEecC---CCCCCCcHHHHHhcC---------CCCChHHHHHHHH---HhccchHHHhccCCCCccccC
Q 001091 660 --------KKAYVPQS---SWIQTGTIRENILFG---------KDMRQSFYEEVLE---GCALNQDIEMWADGDLSVVGE 716 (1159)
Q Consensus 660 --------~iayv~Q~---pwi~~gTIreNIlfG---------~~~d~~~y~~vl~---ac~L~~dl~~lp~Gd~T~IGe 716 (1159)
+||||+-+ -..-+-++||-|+=| .++|++.++++-. -+++. ...+.
T Consensus 99 ~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~-----------~la~r 167 (257)
T COG1119 99 ETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAK-----------HLADR 167 (257)
T ss_pred cchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchh-----------hhccC
Confidence 47898743 333467888888744 2456655554432 22222 22334
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc---CCcEEEEEccCcccccc-cCEEEEE
Q 001091 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL---SQKTVLYTTHQLEFLDA-ADLVLVM 792 (1159)
Q Consensus 717 ~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l---~~kTvIlVTH~l~~l~~-aD~Iivl 792 (1159)
.=..||-|||||+-||||+..+|+++|||||+.+||....+.+.+. +.++. .+.|+|+|||+.+.++. .++++.+
T Consensus 168 ~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~-l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll 246 (257)
T COG1119 168 PFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNR-LEELAASPGAPALLFVTHHAEEIPPCFTHRLLL 246 (257)
T ss_pred chhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHH-HHHHhcCCCCceEEEEEcchhhcccccceEEEe
Confidence 4568999999999999999999999999999999999986666554 54443 26899999999998755 7999999
Q ss_pred eCCeEEEecC
Q 001091 793 KDGKIEQSGK 802 (1159)
Q Consensus 793 ~~G~I~e~Gt 802 (1159)
++|+++.+|.
T Consensus 247 ~~g~v~~~g~ 256 (257)
T COG1119 247 KEGEVVAQGK 256 (257)
T ss_pred eCCceeeccc
Confidence 9999998874
No 356
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=1.3e-26 Score=224.28 Aligned_cols=182 Identities=23% Similarity=0.352 Sum_probs=145.3
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCC---CCcEEEECC-------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVHG------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~---~G~i~~v~g------- 659 (1159)
..++|++..-+. .-.|.+ |++|.+||++-+.||+|||||||++-+.|.+.+. +|++ .+++
T Consensus 3 l~l~nvsl~l~g--------~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~-~l~~~~l~~lP 73 (213)
T COG4136 3 LCLKNVSLRLPG--------SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGEL-WLNEQRLDMLP 73 (213)
T ss_pred eeeeeeeecCCC--------ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEE-EECCeeccccc
Confidence 456788766543 467888 9999999999999999999999999999998763 6777 6765
Q ss_pred ----EEEEEecCCCCCC-CcHHHHHhcCCCCC---h---HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHH
Q 001091 660 ----KKAYVPQSSWIQT-GTIRENILFGKDMR---Q---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1159)
Q Consensus 660 ----~iayv~Q~pwi~~-gTIreNIlfG~~~d---~---~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQR 728 (1159)
+++...|+||+|. -+|-+||+|.-|-+ + ..-+.+++..+|+..+.+.| .+||||||+|
T Consensus 74 a~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrAR 142 (213)
T COG4136 74 AAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRAR 142 (213)
T ss_pred hhhhheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHH
Confidence 5899999999986 59999999987754 1 22345666677777666655 4899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEEEEE
Q 001091 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVM 792 (1159)
Q Consensus 729 IaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~Iivl 792 (1159)
|+|-|++.+.|+.+|||||||.||..-..+--+-++.... .|--+|+|||+.+-.|.-.+|+-|
T Consensus 143 vaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 143 VALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999999999999999876543333344333 478899999999998865566554
No 357
>PLN03073 ABC transporter F family; Provisional
Probab=99.94 E-value=7.8e-26 Score=282.48 Aligned_cols=203 Identities=22% Similarity=0.282 Sum_probs=146.9
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecC
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~ 667 (1159)
..|+++|++++|++ .++|+| ||+|++|++++||||+||||||||++|.|+. ..| + .-+|+|+|++|+
T Consensus 176 ~~I~i~nls~~y~~--------~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~--~~g-~-p~~g~I~~~~Q~ 243 (718)
T PLN03073 176 KDIHMENFSISVGG--------RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHA--IDG-I-PKNCQILHVEQE 243 (718)
T ss_pred eeEEEceEEEEeCC--------CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCC--CCC-C-CCCCEEEEEecc
Confidence 46999999999964 358999 9999999999999999999999999999974 123 2 345678999998
Q ss_pred CCCCCCcHHHHHhcC-------------------------------------CCCCh--HHHHHHHHHhccch------H
Q 001091 668 SWIQTGTIRENILFG-------------------------------------KDMRQ--SFYEEVLEGCALNQ------D 702 (1159)
Q Consensus 668 pwi~~gTIreNIlfG-------------------------------------~~~d~--~~y~~vl~ac~L~~------d 702 (1159)
+--.+-|+.|.++-. .+.++ +++.++.+...+.+ .
T Consensus 244 ~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r 323 (718)
T PLN03073 244 VVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEAR 323 (718)
T ss_pred CCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHH
Confidence 644444554332211 00011 23333333222210 0
Q ss_pred ----HHhccCCCC-ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEc
Q 001091 703 ----IEMWADGDL-SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTT 777 (1159)
Q Consensus 703 ----l~~lp~Gd~-T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVT 777 (1159)
++.+ |.. ......-.+||||||||++||||+..+|+++||||||++||++..+.+.+ .++.+ ++|+|+||
T Consensus 324 ~~~~L~~l--gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~-~L~~~--~~tviivs 398 (718)
T PLN03073 324 AASILAGL--SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLET-YLLKW--PKTFIVVS 398 (718)
T ss_pred HHHHHHHC--CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH-HHHHc--CCEEEEEE
Confidence 1111 111 01122345899999999999999999999999999999999999877654 55554 78999999
Q ss_pred cCcccccc-cCEEEEEeCCeEE-EecChHHHHh
Q 001091 778 HQLEFLDA-ADLVLVMKDGKIE-QSGKYEDLIA 808 (1159)
Q Consensus 778 H~l~~l~~-aD~Iivl~~G~I~-e~Gt~~eL~~ 808 (1159)
|+.+++.. ||+|++|++|++. ..|+|++..+
T Consensus 399 Hd~~~l~~~~d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 399 HAREFLNTVVTDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 99999876 9999999999996 6899987765
No 358
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=3.8e-26 Score=227.71 Aligned_cols=198 Identities=26% Similarity=0.388 Sum_probs=154.9
Q ss_pred cccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-------------EEEEEecCCC------CCC
Q 001091 613 KLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSW------IQT 672 (1159)
Q Consensus 613 ~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------------~iayv~Q~pw------i~~ 672 (1159)
..+. +|++++|+..||+|.+|||||||.+.|.|.++|++|+| .++| .|-.+.|+|- +.-
T Consensus 28 AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~i-l~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i 106 (267)
T COG4167 28 AVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEI-LINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI 106 (267)
T ss_pred cccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceE-EECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence 3445 89999999999999999999999999999999999999 8887 4789999884 222
Q ss_pred CcHHH-----HHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q 001091 673 GTIRE-----NILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1159)
Q Consensus 673 gTIre-----NIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp 747 (1159)
|+|-| |--...+-..++..+.++..+|-+|-..+ ....||-|||||||||||+.-+|+|+|-||+
T Consensus 107 GqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~----------~~~~la~~QKQRVaLARALIL~P~iIIaDeA 176 (267)
T COG4167 107 GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANY----------YPHMLAPGQKQRVALARALILRPKIIIADEA 176 (267)
T ss_pred hhHhcchhhhcccCChHHHHHHHHHHHHHhccCcccccc----------chhhcCchhHHHHHHHHHHhcCCcEEEehhh
Confidence 22222 22222222235666777888887765543 2357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHh-hhcCCcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHHHHhhcchHH-HHHHHHh
Q 001091 748 FSAVDAHTGTHLFKQCLM-GLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSEL-VRQMKAH 821 (1159)
Q Consensus 748 ~SALD~~t~~~if~~~i~-g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~-~~l~~~~ 821 (1159)
+.+||..+..++.+-.+. .-.-|-.-|+|+.++..+++ +|+|+||++|+++|.|+..|+++++..+. ..++++|
T Consensus 177 l~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~~~TkRlieSh 253 (267)
T COG4167 177 LASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIESH 253 (267)
T ss_pred hhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCccHHHHHHHHHH
Confidence 999999999988764442 12247899999999999987 99999999999999999999988433333 3444444
No 359
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=7.9e-26 Score=246.84 Aligned_cols=178 Identities=26% Similarity=0.328 Sum_probs=119.0
Q ss_pred CcccccC-CeEeeCCcEEEEEcCCCCChhHHH-HHHh--CC------------------ccCCCCcEEEECC-EEEEEec
Q 001091 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLL-SSIL--GE------------------IPRISGAAIKVHG-KKAYVPQ 666 (1159)
Q Consensus 610 ~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL-~~ll--Ge------------------~~~~~G~i~~v~g-~iayv~Q 666 (1159)
..+.+++ ||++++||.++|+|++|||||||+ ..+. |. +.|..+. +.| ..++..|
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 83 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDS---IEGLSPAIAID 83 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCcccccc---ccCCCceEEec
Confidence 3578999 999999999999999999999996 3322 11 0111111 111 1334444
Q ss_pred CCC-CCC--CcH---HHHHhc-CCCCCh---HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 001091 667 SSW-IQT--GTI---RENILF-GKDMRQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1159)
Q Consensus 667 ~pw-i~~--gTI---reNIlf-G~~~d~---~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly 736 (1159)
++. ..+ .++ .+...+ ..-+.. ....+.++.++|.+ ........+||||||||++||||++
T Consensus 84 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~laral~ 153 (226)
T cd03270 84 QKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGY----------LTLSRSAPTLSGGEAQRIRLATQIG 153 (226)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCc----------ccccCccCcCCHHHHHHHHHHHHHH
Confidence 432 111 122 222111 100111 11122333333321 1235667899999999999999999
Q ss_pred cCC--CEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEEEEE------eCCeEEEec
Q 001091 737 SNS--DVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVM------KDGKIEQSG 801 (1159)
Q Consensus 737 ~~a--~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~Iivl------~~G~I~e~G 801 (1159)
++| +++||||||++||+++.+.+.+. +..+. +|+|+|+|||+++.+..||+|++| ++|+|+++|
T Consensus 154 ~~p~~~llllDEPt~gLD~~~~~~l~~~-l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 154 SGLTGVLYVLDEPSIGLHPRDNDRLIET-LKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred hCCCCCEEEEeCCccCCCHHHHHHHHHH-HHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 998 59999999999999998877654 54443 589999999999999899999999 999999987
No 360
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=6.7e-26 Score=278.87 Aligned_cols=208 Identities=25% Similarity=0.423 Sum_probs=172.2
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC---CCCcEEEECC-----
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR---ISGAAIKVHG----- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~---~~G~i~~v~g----- 659 (1159)
..++++|.+.+-+.... ..+.+|++ +.++++||+.||.||+||||||||++|.|-.+. .+|+| .++|
T Consensus 24 ~~~~~~~~~~~~~~~~~---~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~i-lvNG~~~~~ 99 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSK---KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEI-LLNGRPRDS 99 (613)
T ss_pred ceeEEEEEEEEecCCCC---ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEE-EECCccCch
Confidence 35778887776544310 24678999 999999999999999999999999999999974 78999 9998
Q ss_pred -----EEEEEecCCC-CCCCcHHHHHhcCC------CCC----hHHHHHHHHHhccchHHHhccCCCCccccCC-CCCCC
Q 001091 660 -----KKAYVPQSSW-IQTGTIRENILFGK------DMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGER-GINLS 722 (1159)
Q Consensus 660 -----~iayv~Q~pw-i~~gTIreNIlfG~------~~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~-G~~LS 722 (1159)
..|||+|+.. +.+-||||++.|-. ..+ +++++++++.-+|. + =.+|.||.. +..+|
T Consensus 100 ~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-~------~~~t~ig~~~~rgiS 172 (613)
T KOG0061|consen 100 RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-K------CADTLIGNPGIRGLS 172 (613)
T ss_pred hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-h------hccceecCCCCCccc
Confidence 3799999876 56789999998753 122 35667777766665 2 357888753 35899
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhh-hcCCcEEEEEccCccc--ccccCEEEEEeCCeEEE
Q 001091 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG-LLSQKTVLYTTHQLEF--LDAADLVLVMKDGKIEQ 799 (1159)
Q Consensus 723 GGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g-~l~~kTvIlVTH~l~~--l~~aD~Iivl~~G~I~e 799 (1159)
||||+|+++|--+..||.|++||||||+||++++.++++ .+++ ..+|||||+.=||++. ....|++++|.+|+++.
T Consensus 173 GGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~-~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy 251 (613)
T KOG0061|consen 173 GGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQ-LLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVY 251 (613)
T ss_pred cchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHH-HHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEE
Confidence 999999999999999999999999999999999999886 4544 3469999999999975 67899999999999999
Q ss_pred ecChHHHHh
Q 001091 800 SGKYEDLIA 808 (1159)
Q Consensus 800 ~Gt~~eL~~ 808 (1159)
.|+.+++.+
T Consensus 252 ~G~~~~~~~ 260 (613)
T KOG0061|consen 252 SGSPRELLE 260 (613)
T ss_pred ecCHHHHHH
Confidence 999988765
No 361
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.93 E-value=9e-26 Score=249.21 Aligned_cols=181 Identities=27% Similarity=0.361 Sum_probs=128.7
Q ss_pred cccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHh--------CCc--cCCCCcEEE---ECCEEEEEecCC--------
Q 001091 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSIL--------GEI--PRISGAAIK---VHGKKAYVPQSS-------- 668 (1159)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~ll--------Ge~--~~~~G~i~~---v~g~iayv~Q~p-------- 668 (1159)
...|+| +++||.|.+++|+|++|||||||++.++ +.. .|..++.+. --..+-+|.|.|
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 346889 9999999999999999999999999764 111 122221100 001233444433
Q ss_pred ---------------------------------------CCCCCcHHHHHhcCCCCC-hHHHHHHHHHhccchHHHhccC
Q 001091 669 ---------------------------------------WIQTGTIRENILFGKDMR-QSFYEEVLEGCALNQDIEMWAD 708 (1159)
Q Consensus 669 ---------------------------------------wi~~gTIreNIlfG~~~d-~~~y~~vl~ac~L~~dl~~lp~ 708 (1159)
.+.+.|+.||+-|-..+. .++..+.++.+
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~v----------- 156 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDV----------- 156 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHc-----------
Confidence 234556666665433221 11222222222
Q ss_pred CCCc-cccCCCCCCCHHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccc
Q 001091 709 GDLS-VVGERGINLSGGQKQRIQLARAVYSN---SDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL 783 (1159)
Q Consensus 709 Gd~T-~IGe~G~~LSGGQKQRIaLARAly~~---a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l 783 (1159)
|... ..++...+||||||||++||||+.++ |++|||||||++||++..+.+.+ .++.+. +|.|+|+|||+++++
T Consensus 157 gL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~-~L~~l~~~g~tvIiitH~~~~i 235 (261)
T cd03271 157 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLE-VLQRLVDKGNTVVVIEHNLDVI 235 (261)
T ss_pred CCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHH
Confidence 2322 35778889999999999999999996 79999999999999999887755 565554 489999999999999
Q ss_pred cccCEEEEE------eCCeEEEecCh
Q 001091 784 DAADLVLVM------KDGKIEQSGKY 803 (1159)
Q Consensus 784 ~~aD~Iivl------~~G~I~e~Gt~ 803 (1159)
..||+|++| ++|+|+++|++
T Consensus 236 ~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 236 KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 999999999 89999999974
No 362
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.93 E-value=2.4e-26 Score=231.00 Aligned_cols=122 Identities=39% Similarity=0.611 Sum_probs=110.5
Q ss_pred ccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-------------EEEEEecCCCCCCCc-HHHH
Q 001091 614 LTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGT-IREN 678 (1159)
Q Consensus 614 L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------------~iayv~Q~pwi~~gT-IreN 678 (1159)
|+| |+++++|++++|+|++|||||||+++|.|.++|.+|+| .++| .++|++|+++++++. ++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSI-LINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEE-EETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence 578 99999999999999999999999999999999999999 8876 489999999988775 9999
Q ss_pred HhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q 001091 679 ILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (1159)
Q Consensus 679 IlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~S 749 (1159)
.++++++++++.+++.. ..++.++.++..||||||||++||||++++|+++||||||+
T Consensus 80 ------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 45678888888887755 45677888899999999999999999999999999999996
No 363
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.93 E-value=3.1e-25 Score=245.12 Aligned_cols=214 Identities=28% Similarity=0.410 Sum_probs=167.7
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC-----CCCcEEEECC---
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~-----~~G~i~~v~g--- 659 (1159)
..++++|.+..+.... ......++ ||++++||.+|+||.||||||--.++|+|+++. -+|+| ..+|
T Consensus 5 ~lL~v~nLsV~f~~~~----~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i-~f~G~dl 79 (534)
T COG4172 5 PLLSIRNLSVAFHQEG----GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI-LFDGEDL 79 (534)
T ss_pred cceeeeccEEEEecCC----cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCcccee-EEcChhh
Confidence 3578888887776431 34578899 999999999999999999999999999999986 35677 6655
Q ss_pred --------------EEEEEecCCCC-CC--CcHHHH----HhcCCCCC----hHHHHHHHHHhccch---HHHhccCCCC
Q 001091 660 --------------KKAYVPQSSWI-QT--GTIREN----ILFGKDMR----QSFYEEVLEGCALNQ---DIEMWADGDL 711 (1159)
Q Consensus 660 --------------~iayv~Q~pwi-~~--gTIreN----IlfG~~~d----~~~y~~vl~ac~L~~---dl~~lp~Gd~ 711 (1159)
+|+.+.|+|-- .| -||-.- |..-+..+ ++|..+.++..++.+ -++..|
T Consensus 80 l~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP---- 155 (534)
T COG4172 80 LAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP---- 155 (534)
T ss_pred hcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC----
Confidence 69999999963 22 244443 33333322 345555556666543 344444
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccc-cCE
Q 001091 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADL 788 (1159)
Q Consensus 712 T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~-aD~ 788 (1159)
..|||||||||-||-|+..+||++|-||||.|||..+..+|.+ .++.+- .|..+++|||++..+++ ||+
T Consensus 156 -------HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~-Ll~~Lq~~~gMa~lfITHDL~iVr~~ADr 227 (534)
T COG4172 156 -------HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILD-LLKELQAELGMAILFITHDLGIVRKFADR 227 (534)
T ss_pred -------cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHH-HHHHHHHHhCcEEEEEeccHHHHHHhhhh
Confidence 4799999999999999999999999999999999999999876 455544 37899999999999866 999
Q ss_pred EEEEeCCeEEEecChHHHHhhcchHHHHHHH
Q 001091 789 VLVMKDGKIEQSGKYEDLIADQNSELVRQMK 819 (1159)
Q Consensus 789 Iivl~~G~I~e~Gt~~eL~~~~~~~~~~l~~ 819 (1159)
|.||.+|+|+|.|+-+++.+++...|...+-
T Consensus 228 V~VM~~G~ivE~~~t~~lF~~PqHpYTr~Ll 258 (534)
T COG4172 228 VYVMQHGEIVETGTTETLFAAPQHPYTRKLL 258 (534)
T ss_pred EEEEeccEEeecCcHHHHhhCCCChHHHHHH
Confidence 9999999999999999999866667765543
No 364
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.93 E-value=1.4e-24 Score=260.06 Aligned_cols=200 Identities=28% Similarity=0.443 Sum_probs=168.2
Q ss_pred CCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--EEEE
Q 001091 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAY 663 (1159)
Q Consensus 587 ~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--~iay 663 (1159)
....++++|++++|++. .+++++ |+.|++|+++||+||+|+||||||+.|+|+..|.+|+| .+.. ++||
T Consensus 318 g~~vl~~~~~~~~y~~~-------~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v-~~g~~v~igy 389 (530)
T COG0488 318 GKLVLEFENVSKGYDGG-------RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV-KVGETVKIGY 389 (530)
T ss_pred CCeeEEEeccccccCCC-------ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceE-EeCCceEEEE
Confidence 35679999999999753 578999 99999999999999999999999999999999999998 7654 5999
Q ss_pred EecCC--CCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 001091 664 VPQSS--WIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1159)
Q Consensus 664 v~Q~p--wi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~ 740 (1159)
.+|+- +..+.|+-|++.=+.+ .++...+..+....+..|-. ......||||||.|+.||+.+.++|.
T Consensus 390 f~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~----------~~~v~~LSGGEk~Rl~La~ll~~~pN 459 (530)
T COG0488 390 FDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ----------EKPVGVLSGGEKARLLLAKLLLQPPN 459 (530)
T ss_pred EEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHH----------hCchhhcCHhHHHHHHHHHHhccCCC
Confidence 99985 4466799999976653 34677888888887765533 23456899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeCCeEEEe-cChHHHHh
Q 001091 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS-GKYEDLIA 808 (1159)
Q Consensus 741 I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~-Gt~~eL~~ 808 (1159)
+|||||||..||.++-+.+ ++++... .-|||+|||+-+|+.. |++|+.+++ ++.+. |+|++..+
T Consensus 460 vLiLDEPTNhLDi~s~~aL-e~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 460 LLLLDEPTNHLDIESLEAL-EEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred EEEEcCCCccCCHHHHHHH-HHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 9999999999999996544 4444433 4699999999999977 999999999 77665 99998876
No 365
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=9.7e-26 Score=235.29 Aligned_cols=202 Identities=23% Similarity=0.408 Sum_probs=167.5
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.+++++++-++++ ..+++| ||++++|+..+++|++|+||||.++.|||+++|++|+| .++|
T Consensus 2 ~L~ie~vtK~Fg~--------k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I-~~~g~~~~~~~~~ 72 (300)
T COG4152 2 ALEIEGVTKSFGD--------KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI-TWNGGPLSQEIKN 72 (300)
T ss_pred ceEEecchhccCc--------eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceE-EEcCcchhhhhhh
Confidence 4788999998864 467889 99999999999999999999999999999999999999 9988
Q ss_pred EEEEEecCCCC-CCCcHHHHHhcCCC---CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 001091 660 KKAYVPQSSWI-QTGTIRENILFGKD---MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1159)
Q Consensus 660 ~iayv~Q~pwi-~~gTIreNIlfG~~---~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAl 735 (1159)
+|||.|.+-=| .+.|+.|-+.|-.. ++.+..++= +...++.+.-+.. -..+-..||-|..|+|++--|+
T Consensus 73 rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~-----~~~wLer~~i~~~--~~~kIk~LSKGnqQKIQfisav 145 (300)
T COG4152 73 RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKK-----LQAWLERLEIVGK--KTKKIKELSKGNQQKIQFISAV 145 (300)
T ss_pred hcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhcccccc--ccchHHHhhhhhhHHHHHHHHH
Confidence 79999999776 56899999987532 333333222 2334555432211 2345678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHHHHh
Q 001091 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 736 y~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
.++|+++|||||||+|||...+ +.++.+..+. +|+|+|+.||+++.+.. ||+++.|++|+.+-.|+-+++.+
T Consensus 146 iHePeLlILDEPFSGLDPVN~e-lLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 146 IHEPELLILDEPFSGLDPVNVE-LLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred hcCCCEEEecCCccCCChhhHH-HHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 9999999999999999998865 5566665554 69999999999999866 99999999999999999999876
No 366
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.92 E-value=2.1e-21 Score=220.25 Aligned_cols=447 Identities=18% Similarity=0.194 Sum_probs=265.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC---ChH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 001091 331 ESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SSG---IIINMINVDVERIGDFFLYIHRIWLLP-VQVF 403 (1159)
Q Consensus 331 ~~l~~~~~~~~~~r~~~riR~~L~~~iy~K~L~ls~~~~---~~G---~i~nlms~D~~~i~~~~~~~~~~w~~p-l~i~ 403 (1159)
.++.+..-.|...+++...|.-|+.-.|++-+.-...-+ ..| ..=|-++.|+..+.+....+..-..-| +.++
T Consensus 170 AtFvNS~Iryle~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~ 249 (728)
T KOG0064|consen 170 ASFVNSAIRYLESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLI 249 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 344444555667789999999999999998764321100 112 223558899988888776655555555 3455
Q ss_pred HHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhchHHHHHhccHHHHHHH
Q 001091 404 LALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDAR----IKATSETLKSMRVLKLLSWEQEFLKK 479 (1159)
Q Consensus 404 ia~~lL~~~lg~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R----~~~~~E~L~~ik~IK~~~wE~~f~~~ 479 (1159)
+..+-|....+ -....+.....+.+.+...+-|....--.++..+...| -..-+.+++|-..|-+|+-.+.-.++
T Consensus 250 l~s~~L~~s~~-s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~q 328 (728)
T KOG0064|consen 250 LISFTLLDSAT-SVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQ 328 (728)
T ss_pred HHHHHHHhhhc-cccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHH
Confidence 55555544332 11111111111112222222222211112222222222 23567899999999999987766666
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHH---HHHHHHHH--HHH-HHHHHHHHhcCC--c-----CHHHHHH-HHHHHHH
Q 001091 480 LLRLREIERDS----LKKYLYTCSAIAF---LFWASPTL--VSV-ITFGVCILLKTP--L-----TSGAVLS-ALATFRI 541 (1159)
Q Consensus 480 i~~~R~~E~~~----l~~~~~~~~~~~~---~~~~~~~l--v~~-~~f~~~~~~~~~--L-----t~~~vft-~l~l~~~ 541 (1159)
+++.-+.-... .++.......-.| ..|...-+ +++ +.+++. ..+++ + +-...|+ .=-++-.
T Consensus 329 l~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~-~s~~~~~~~e~~~srt~~f~t~r~LL~s 407 (728)
T KOG0064|consen 329 VDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTL-ASEGTLQLSEEGNSRTKEFITNRRLLLS 407 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeeccc-CCCCcccccccchhHHHHHHHHHHHHHH
Confidence 65542221111 1111111111111 11111100 000 000111 11111 1 1122232 2233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cC------CCCCC-----C--------CCCCC-----CCCccEEEeee
Q 001091 542 LQEPIYNLPELISMIAQTKVSLYRIQEFIKE-DN------QKKPI-----T--------EPTSK-----ASDVAIDIEAG 596 (1159)
Q Consensus 542 l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~-~e------~~~~~-----~--------~~~~~-----~~~~~I~~~~~ 596 (1159)
....+..+...+..+.|-..--.|+.+.++- ++ +...+ . ..+.+ .....|.++|+
T Consensus 408 aAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenI 487 (728)
T KOG0064|consen 408 AADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENI 487 (728)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecC
Confidence 4556667777788888888888888754421 11 00000 0 00000 01224677776
Q ss_pred EEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEEC--CEEEEEecCCCCCCC
Q 001091 597 EYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--GKKAYVPQSSWIQTG 673 (1159)
Q Consensus 597 sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~--g~iayv~Q~pwi~~g 673 (1159)
-.--|+. ..+... +|+|++|.-..|+||+|||||||.+.|-|..|...|.. .+. .++-|.||.|+.--|
T Consensus 488 pvItP~~-------~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L-~~P~~~~mFYIPQRPYms~g 559 (728)
T KOG0064|consen 488 PVITPAG-------DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLL-SIPRPNNIFYIPQRPYMSGG 559 (728)
T ss_pred ceeccCc-------ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCee-ecCCCcceEeccCCCccCcC
Confidence 6554433 445666 99999999999999999999999999999999988876 553 469999999999999
Q ss_pred cHHHHHhcCC--------CCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEe
Q 001091 674 TIRENILFGK--------DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFD 745 (1159)
Q Consensus 674 TIreNIlfG~--------~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLD 745 (1159)
|.||-|.+.. .+.++..+++++...|+. +.+-..|.+. +-+----||||+|||+++||-.|++|.--+||
T Consensus 560 tlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~-i~qr~~g~da-~~dWkd~LsgGekQR~~mARm~yHrPkyalLD 637 (728)
T KOG0064|consen 560 TLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEH-ILQREGGWDA-VRDWKDVLSGGEKQRMGMARMFYHRPKYALLD 637 (728)
T ss_pred cccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHH-HHHhccChhh-hccHHhhccchHHHHHHHHHHHhcCcchhhhh
Confidence 9999999863 356677788888887764 3333444332 22333469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEE
Q 001091 746 DPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM 792 (1159)
Q Consensus 746 Dp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl 792 (1159)
|+|||+-.+++..||+.+ ++ .|-+.|-||||++.-+.-.+.+-.
T Consensus 638 EcTsAvsidvE~~i~~~a-k~--~gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 638 ECTSAVSIDVEGKIFQAA-KD--AGISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred hhhcccccchHHHHHHHH-Hh--cCceEEEeecCccHHHHHHHHHhc
Confidence 999999999999999864 22 377999999999876654444333
No 367
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=2.8e-24 Score=217.24 Aligned_cols=198 Identities=21% Similarity=0.357 Sum_probs=166.9
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE-------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~------- 660 (1159)
..++++|++.+++. -..+++ ||.+.+||+-+|+||+|+||||++..|.|-.+|++|++ ..+|.
T Consensus 4 ~iL~~~~vsVsF~G--------F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v-~f~g~~dl~~~~ 74 (249)
T COG4674 4 IILYLDGVSVSFGG--------FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEV-LFDGDTDLTKLP 74 (249)
T ss_pred ceEEEeceEEEEcc--------eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceE-EEcCchhhccCC
Confidence 35788999999875 357899 99999999999999999999999999999999999999 88872
Q ss_pred --------EEEEecCCCCCC-CcHHHHHhcCCC---------------CChHHHHHHHHHhccchHHHhccCCCCccccC
Q 001091 661 --------KAYVPQSSWIQT-GTIRENILFGKD---------------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1159)
Q Consensus 661 --------iayv~Q~pwi~~-gTIreNIlfG~~---------------~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe 716 (1159)
|+-=.|.|-+|. -||+||+-.... -++.|.++++..-+|.+-- ..
T Consensus 75 e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~-----------~~ 143 (249)
T COG4674 75 EHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDER-----------DR 143 (249)
T ss_pred HHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhh-----------hh
Confidence 677899999885 599999864321 1334777777777775421 12
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCC-CHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeC
Q 001091 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAV-DAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKD 794 (1159)
Q Consensus 717 ~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SAL-D~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~ 794 (1159)
-..+||-||||++-|+--+.++|+++|||||.+++ |++|++. -+.++.+.+++++++|-|+++|++. ||+|-||..
T Consensus 144 ~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~t--aeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~ 221 (249)
T COG4674 144 LAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKT--AELLKSLAGKHSILVVEHDMGFVREIADKVTVLHE 221 (249)
T ss_pred hhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHH--HHHHHHHhcCceEEEEeccHHHHHHhhheeEEEec
Confidence 34689999999999999999999999999999999 6666542 4567778788999999999999976 999999999
Q ss_pred CeEEEecChHHHHh
Q 001091 795 GKIEQSGKYEDLIA 808 (1159)
Q Consensus 795 G~I~e~Gt~~eL~~ 808 (1159)
|.+..+|+.+|+.+
T Consensus 222 G~VL~EGsld~v~~ 235 (249)
T COG4674 222 GSVLAEGSLDEVQN 235 (249)
T ss_pred cceeecccHHHhhc
Confidence 99999999999876
No 368
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.91 E-value=5.3e-24 Score=227.29 Aligned_cols=152 Identities=21% Similarity=0.205 Sum_probs=119.7
Q ss_pred cC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCC---------cEEEE----------CCEEEEEecCCCCCCCc
Q 001091 615 TD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG---------AAIKV----------HGKKAYVPQSSWIQTGT 674 (1159)
Q Consensus 615 ~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G---------~i~~v----------~g~iayv~Q~pwi~~gT 674 (1159)
++ ++++++| +++|+||+|||||||+++|.|.+++..| .+ .. ...++|++|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~vfq~~~~~--- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDV-IFAGSETRKPANFAEVTLTFDNSDGR--- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHH-hccCCCCCCCCceEEEEEEEEcCCCc---
Confidence 45 7899999 9999999999999999999998866533 23 22 13689999999988
Q ss_pred HHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCC
Q 001091 675 IRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY----SNSDVYIFDDPFSA 750 (1159)
Q Consensus 675 IreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly----~~a~I~LLDDp~SA 750 (1159)
|+.. .+++.+++++. ++ ........||||||||++||||+. ++|++++||||+++
T Consensus 89 ------~~~~-~~~~~~~~l~~----------~~----~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~ 147 (197)
T cd03278 89 ------YSII-SQGDVSEIIEA----------PG----KKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAA 147 (197)
T ss_pred ------eeEE-ehhhHHHHHhC----------CC----ccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCccc
Confidence 3321 23455555554 11 112455689999999999999985 67799999999999
Q ss_pred CCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEe
Q 001091 751 VDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMK 793 (1159)
Q Consensus 751 LD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~ 793 (1159)
||++..+.+.+ .++.+.++.|+|+|||+++.+..||+++.|.
T Consensus 148 LD~~~~~~l~~-~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~ 189 (197)
T cd03278 148 LDDANVERFAR-LLKEFSKETQFIVITHRKGTMEAADRLYGVT 189 (197)
T ss_pred CCHHHHHHHHH-HHHHhccCCEEEEEECCHHHHhhcceEEEEE
Confidence 99999887754 5666666899999999999999999999985
No 369
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=6.4e-24 Score=210.23 Aligned_cols=214 Identities=24% Similarity=0.379 Sum_probs=162.1
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
-+++++.+..|.+. .--+| +|++.|||..+|||++||||||||++|.+-+.|+.|+| ..+-
T Consensus 6 LL~V~~lsk~Yg~~--------~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v-~Y~~r~~~~~dl~ 76 (258)
T COG4107 6 LLSVSGLSKLYGPG--------KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTV-TYRMRDGQPRDLY 76 (258)
T ss_pred ceeehhhhhhhCCC--------cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeE-EEEcCCCCchhHh
Confidence 47788888888754 34567 99999999999999999999999999999999999998 4421
Q ss_pred -------------EEEEEecCCCC---CCCcHHHHHhcCC-CC--ChHHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 -------------KKAYVPQSSWI---QTGTIRENILFGK-DM--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 -------------~iayv~Q~pwi---~~gTIreNIlfG~-~~--d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.=++|-|+|-= ..-|---|| |+ .+ ....|-++ ++.+ .+.++.. +=|.+.|.+....
T Consensus 77 ~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~Ni--GERlma~G~RHYG~i-R~~a-~~WL~~V-EI~~~RiDD~Prt 151 (258)
T COG4107 77 TMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNI--GERLMAIGARHYGNI-RAEA-QDWLEEV-EIDLDRIDDLPRT 151 (258)
T ss_pred hhchHHHHHHhhhccceeecCccccceeeeccCCcc--chhHHhhhhhhhhhH-HHHH-HHHHHhc-ccCcccccCcccc
Confidence 13899999841 111112222 10 00 11123222 2222 1223322 2355678888999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccccc-cCEEEEEeCCeE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~~-aD~Iivl~~G~I 797 (1159)
.|||.+||++|||-+...|.++.+||||-+||..+...+.+ +++++-+ +-.+|+|||.+...+- +|+..||++|++
T Consensus 152 FSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLD-llrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~v 230 (258)
T COG4107 152 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD-LLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQV 230 (258)
T ss_pred cchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHH-HHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCE
Confidence 99999999999999999999999999999999999888875 6777664 6799999999998865 999999999999
Q ss_pred EEecChHHHHhhcchHHHHHH
Q 001091 798 EQSGKYEDLIADQNSELVRQM 818 (1159)
Q Consensus 798 ~e~Gt~~eL~~~~~~~~~~l~ 818 (1159)
+|+|--+..+.++...|.+++
T Consensus 231 ve~GLTDrvLDDP~hPYTQLL 251 (258)
T COG4107 231 VESGLTDRVLDDPHHPYTQLL 251 (258)
T ss_pred eccccccccccCCCCchHHHH
Confidence 999998888875556666654
No 370
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.8e-22 Score=210.57 Aligned_cols=197 Identities=25% Similarity=0.307 Sum_probs=157.8
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCC--ccCCCCcEEEECCE-------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE--IPRISGAAIKVHGK------- 660 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe--~~~~~G~i~~v~g~------- 660 (1159)
++++|.+.+-+.. +.+|++ ||+|++||..||.||+|||||||.++|.|. |++++|+| ..+|.
T Consensus 4 L~I~dLhv~v~~~-------keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I-~~~GedI~~l~~ 75 (251)
T COG0396 4 LEIKDLHVEVEGK-------KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEI-LFDGEDILELSP 75 (251)
T ss_pred eEEeeeEEEecCc-------hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceE-EECCcccccCCH
Confidence 6788888776531 489999 999999999999999999999999999996 68999999 88883
Q ss_pred -------EEEEecCCCCCCC-cHHHHHhcCC----CC---C---hHHHHHHHHHhccchHHHhccCCCCccccCCC--CC
Q 001091 661 -------KAYVPQSSWIQTG-TIRENILFGK----DM---R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERG--IN 720 (1159)
Q Consensus 661 -------iayv~Q~pwi~~g-TIreNIlfG~----~~---d---~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G--~~ 720 (1159)
+....|.|-=+.| |+++=+.-+. .. . .++.++.++...+++++. +|+ ..
T Consensus 76 ~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l-----------~R~vN~G 144 (251)
T COG0396 76 DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFL-----------ERYVNEG 144 (251)
T ss_pred hHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHh-----------hcccCCC
Confidence 6788999986666 7777665321 11 1 233344455555555322 233 35
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccccc--CEEEEEeCCeE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAA--DLVLVMKDGKI 797 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~a--D~Iivl~~G~I 797 (1159)
+|||+|.|.-|+-++.-+|++.|||||=|+||...-+ ++.+.++.+. +|+++++|||.-..+.+. |++.||-+|+|
T Consensus 145 FSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk-~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrI 223 (251)
T COG0396 145 FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALK-IVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRI 223 (251)
T ss_pred cCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHH-HHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEE
Confidence 8999999999999999999999999999999998865 5566777665 489999999999988775 99999999999
Q ss_pred EEecChHHHHh
Q 001091 798 EQSGKYEDLIA 808 (1159)
Q Consensus 798 ~e~Gt~~eL~~ 808 (1159)
+.+|.+ ||..
T Consensus 224 v~sG~~-el~~ 233 (251)
T COG0396 224 VKSGDP-ELAE 233 (251)
T ss_pred EecCCH-HHHH
Confidence 999998 7765
No 371
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=4.9e-23 Score=208.31 Aligned_cols=163 Identities=27% Similarity=0.378 Sum_probs=135.2
Q ss_pred CcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE------------EEEEecCCCC-CCCcH
Q 001091 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------------KAYVPQSSWI-QTGTI 675 (1159)
Q Consensus 610 ~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~------------iayv~Q~pwi-~~gTI 675 (1159)
+...+.+ +|++.+||.+-|+||+||||||||+.|.|.++|.+|+| ..+|. .-|..-+|=| ..-|+
T Consensus 14 e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v-~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa 92 (209)
T COG4133 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV-YWQGEPIQNVRESYHQALLYLGHQPGIKTELTA 92 (209)
T ss_pred cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeE-EecCCCCccchhhHHHHHHHhhccccccchhhH
Confidence 3567888 99999999999999999999999999999999999999 77642 3455555555 45799
Q ss_pred HHHHhcCCCC----ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 001091 676 RENILFGKDM----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAV 751 (1159)
Q Consensus 676 reNIlfG~~~----d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SAL 751 (1159)
.||+.|-+++ +++...++++..+|. +++.+|-+ +||-|||.||||||=..+.+++.|||||++|+
T Consensus 93 ~ENL~F~~~~~~~~~~~~i~~Al~~vgL~-g~~dlp~~----------~LSAGQqRRvAlArL~ls~~pLWiLDEP~taL 161 (209)
T COG4133 93 LENLHFWQRFHGSGNAATIWEALAQVGLA-GLEDLPVG----------QLSAGQQRRVALARLWLSPAPLWILDEPFTAL 161 (209)
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHcCcc-cccccchh----------hcchhHHHHHHHHHHHcCCCCceeecCccccc
Confidence 9999997653 457888999999885 45556654 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhh-hcCCcEEEEEccCcccccc
Q 001091 752 DAHTGTHLFKQCLMG-LLSQKTVLYTTHQLEFLDA 785 (1159)
Q Consensus 752 D~~t~~~if~~~i~g-~l~~kTvIlVTH~l~~l~~ 785 (1159)
|.+.. .+|...+.. .-+|--||+.||+.--++.
T Consensus 162 Dk~g~-a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 162 DKEGV-ALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred CHHHH-HHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 99874 566776644 4578899999999765543
No 372
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=5.6e-23 Score=218.09 Aligned_cols=187 Identities=27% Similarity=0.353 Sum_probs=140.0
Q ss_pred cccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE------------EEEE----ecCCCCCCC
Q 001091 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------------KAYV----PQSSWIQTG 673 (1159)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~------------iayv----~Q~pwi~~g 673 (1159)
.+..+| ||+||+|+.++.+|++|+||||+|+.|.|...|++|+| .|+|. ++|| .|--|=.+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v-~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp- 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV-RVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP- 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeE-EecCcCcchhHHHHHHHHHHHhhhhheeeeech-
Confidence 346788 99999999999999999999999999999999999999 99874 2222 12223222
Q ss_pred cHHHHHhcCC---CCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 001091 674 TIRENILFGK---DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSA 750 (1159)
Q Consensus 674 TIreNIlfG~---~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SA 750 (1159)
+.|-+..-+ +..++.|++-++ ...+.| +.+..+-.+-..||=|||-|..||-||.++|+|++|||||=+
T Consensus 115 -~~ds~~v~~~Iy~Ipd~~F~~r~~-----~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 -ALDSLEVLKLIYEIPDDEFAERLD-----FLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred -hhhhHHHHHHHHhCCHHHHHHHHH-----HHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 222222111 122333333222 112222 223334456678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhh--cCCcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHHHHh
Q 001091 751 VDAHTGTHLFKQCLMGL--LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 751 LD~~t~~~if~~~i~g~--l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
||..+...| .+.++.. -++.||++.||.++-+.. ||+|+.|+.|+++..|+.++|.+
T Consensus 187 LDV~aq~~i-r~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~ 246 (325)
T COG4586 187 LDVNAQANI-REFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE 246 (325)
T ss_pred cchhHHHHH-HHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHH
Confidence 999987766 4456543 358999999999998755 99999999999999999999987
No 373
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.88 E-value=1.3e-22 Score=224.18 Aligned_cols=169 Identities=23% Similarity=0.274 Sum_probs=115.3
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCCc----------------cCCCCcEEEECCEEEEEecCCCCC------CCcHH----
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGEI----------------PRISGAAIKVHGKKAYVPQSSWIQ------TGTIR---- 676 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe~----------------~~~~G~i~~v~g~iayv~Q~pwi~------~gTIr---- 676 (1159)
|++++|+||+|||||||+++|.+.+ .+.+|.. ...+.+.++.|++.-+ +-+++
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~-~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig 101 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPS-VMSAYVEIIFDNSDNRFPIDKEEVRLRRTIG 101 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCC-CceEEEEEEEEcCCCccCCCCCEEEEEEEEE
Confidence 7899999999999999999998443 2223311 1112233344443110 01122
Q ss_pred ---HHHhc-CCCCChHHHHHHHHHhccchHH--HhccCCCCcc-------ccCCCCCCCHHHHHHHHHHHHHc----cCC
Q 001091 677 ---ENILF-GKDMRQSFYEEVLEGCALNQDI--EMWADGDLSV-------VGERGINLSGGQKQRIQLARAVY----SNS 739 (1159)
Q Consensus 677 ---eNIlf-G~~~d~~~y~~vl~ac~L~~dl--~~lp~Gd~T~-------IGe~G~~LSGGQKQRIaLARAly----~~a 739 (1159)
+|+.+ +.....+.+...++.+++.++- ...+.|..+. .++++.+||||||||++||||++ ++|
T Consensus 102 ~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~ 181 (243)
T cd03272 102 LKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPA 181 (243)
T ss_pred CCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCC
Confidence 33322 2234556666677766654321 1133443322 35788999999999999999996 468
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEe
Q 001091 740 DVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMK 793 (1159)
Q Consensus 740 ~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~ 793 (1159)
+++||||||++||+++.+.+.+ .+..+.+++|+|++||+.+....||+|++|+
T Consensus 182 ~illlDEp~~~ld~~~~~~~~~-~l~~~~~~~~ii~~~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 182 PFYLFDEIDAALDAQYRTAVAN-MIKELSDGAQFITTTFRPELLEVADKFYGVK 234 (243)
T ss_pred CEEEEECCccCCCHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHhhCCEEEEEE
Confidence 9999999999999999887765 5666666889999999988888899999995
No 374
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.88 E-value=2.4e-22 Score=215.92 Aligned_cols=153 Identities=24% Similarity=0.334 Sum_probs=121.7
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHH----hCCccCCCCcEEEE----------CCEEEEEecCC-----CCC-CCcHH
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSI----LGEIPRISGAAIKV----------HGKKAYVPQSS-----WIQ-TGTIR 676 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~l----lGe~~~~~G~i~~v----------~g~iayv~Q~p-----wi~-~gTIr 676 (1159)
++++.+| +++|+||+|||||||+.+| .|..++.+|.+ .. ...++++.|++ -+. +-|+.
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~-~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGG-AHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccc-cchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 5677788 9999999999999999999 49999888754 21 12689999998 222 23899
Q ss_pred HHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHH------HHHHHHHccCCCEEEEeCCCCC
Q 001091 677 ENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR------IQLARAVYSNSDVYIFDDPFSA 750 (1159)
Q Consensus 677 eNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQR------IaLARAly~~a~I~LLDDp~SA 750 (1159)
||+.++. +++.++.+ .+...+|||||||| ++||||+..+|++++||||+++
T Consensus 95 ~~~~~~~---~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~ 151 (204)
T cd03240 95 ENVIFCH---QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTN 151 (204)
T ss_pred hceeeec---hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccc
Confidence 9998763 22222222 45677999999996 7999999999999999999999
Q ss_pred CCHHHHH-HHHHHHHhhhcC--CcEEEEEccCcccccccCEEEEEe-CC
Q 001091 751 VDAHTGT-HLFKQCLMGLLS--QKTVLYTTHQLEFLDAADLVLVMK-DG 795 (1159)
Q Consensus 751 LD~~t~~-~if~~~i~g~l~--~kTvIlVTH~l~~l~~aD~Iivl~-~G 795 (1159)
||++..+ .+.+ .+..+.+ ++|+|++||+.+.+..||+|++|+ +|
T Consensus 152 LD~~~~~~~l~~-~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~~~ 199 (204)
T cd03240 152 LDEENIEESLAE-IIEERKSQKNFQLIVITHDEELVDAADHIYRVEKDG 199 (204)
T ss_pred cCHHHHHHHHHH-HHHHHHhccCCEEEEEEecHHHHhhCCEEEEEeeCC
Confidence 9999977 6654 4555554 789999999999998999999996 44
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.87 E-value=4.3e-22 Score=215.64 Aligned_cols=159 Identities=16% Similarity=0.205 Sum_probs=114.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCC-ccCCCCcEEEE------------CCEEEEEecCCCCCCCcHHHHHhcCCCCChH
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGE-IPRISGAAIKV------------HGKKAYVPQSSWIQTGTIRENILFGKDMRQS 688 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe-~~~~~G~i~~v------------~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~ 688 (1159)
+|++++|+||+|||||||+++|.+. +.+..+.. .. ...++++.|++.-.-...| ++ ..+.+
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r----~~-gl~~~ 100 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAITYALYGKTPRYG-RQENLRSVFAPGEDTAEVSFTFQLGGKKYRVER----SR-GLDYD 100 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHheeeEecCccccc-cchhHHHHhcCCCccEEEEEEEEECCeEEEEEE----ec-CCCHH
Confidence 4889999999999999999999953 33333332 21 2258888888743322222 22 23333
Q ss_pred HHHHHHHHhccchHHHhccCC-CCccccCCCCCCCHHHHHHHHHHHHHcc----------CCCEEEEeCCCCCCCHHHHH
Q 001091 689 FYEEVLEGCALNQDIEMWADG-DLSVVGERGINLSGGQKQRIQLARAVYS----------NSDVYIFDDPFSAVDAHTGT 757 (1159)
Q Consensus 689 ~y~~vl~ac~L~~dl~~lp~G-d~T~IGe~G~~LSGGQKQRIaLARAly~----------~a~I~LLDDp~SALD~~t~~ 757 (1159)
.+.+.+ .++.| .++.+...+.+||||||||++||||+.. +|+++||||||++||+.+.+
T Consensus 101 ~~~~~~----------~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~ 170 (213)
T cd03279 101 QFTRIV----------LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALE 170 (213)
T ss_pred HHHHhh----------hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHH
Confidence 333221 12223 3455567788999999999999999974 67999999999999999987
Q ss_pred HHHHHHHhhhcC-CcEEEEEccCcccccc-cCEEEEEeCCeE
Q 001091 758 HLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1159)
Q Consensus 758 ~if~~~i~g~l~-~kTvIlVTH~l~~l~~-aD~Iivl~~G~I 797 (1159)
.+ .+.+..+.+ ++|+|+|||+.+.+.. +|+|++|++|.+
T Consensus 171 ~~-~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 171 AV-ATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HH-HHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 66 456666654 8899999999998765 799999998854
No 376
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.86 E-value=1.7e-21 Score=246.95 Aligned_cols=94 Identities=29% Similarity=0.537 Sum_probs=85.8
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEE
Q 001091 714 VGERGINLSGGQKQRIQLARAVYSNS---DVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLV 789 (1159)
Q Consensus 714 IGe~G~~LSGGQKQRIaLARAly~~a---~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~I 789 (1159)
.+.+..+||||||||++||||+.++| ++|||||||++||++..+.+.+ .++.+. +|+|+|+|||+++.+..||+|
T Consensus 824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~-~L~~l~~~G~TVIiitH~~~~i~~aD~i 902 (943)
T PRK00349 824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLE-VLHRLVDKGNTVVVIEHNLDVIKTADWI 902 (943)
T ss_pred ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHhCCEE
Confidence 57788999999999999999999999 9999999999999999877654 566554 589999999999999999999
Q ss_pred EEE------eCCeEEEecChHHHHh
Q 001091 790 LVM------KDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 790 ivl------~~G~I~e~Gt~~eL~~ 808 (1159)
++| ++|+|++.|+++++.+
T Consensus 903 i~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 903 IDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred EEecCCcCCCCCEEEEeCCHHHHHh
Confidence 999 7999999999999987
No 377
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.86 E-value=4.4e-22 Score=220.45 Aligned_cols=167 Identities=20% Similarity=0.214 Sum_probs=128.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCCccCCCCcEEEEC--------C------------EEEEEecCC--CCCCCcHHHHHh--
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--------G------------KKAYVPQSS--WIQTGTIRENIL-- 680 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~--------g------------~iayv~Q~p--wi~~gTIreNIl-- 680 (1159)
+++|+||+|||||||+.+|.+.+.+..|++ ... | .+.|..|++ .++..+++++-.
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~-r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHL-RSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcccc-cccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 999999999999999999998887655544 221 1 133444442 233334444321
Q ss_pred --cCCCCChHHHHHHHHHhccchHHHh--ccCCCCccccCCC---------CCCCHHHHHHHHHHHHHcc----CCCEEE
Q 001091 681 --FGKDMRQSFYEEVLEGCALNQDIEM--WADGDLSVVGERG---------INLSGGQKQRIQLARAVYS----NSDVYI 743 (1159)
Q Consensus 681 --fG~~~d~~~y~~vl~ac~L~~dl~~--lp~Gd~T~IGe~G---------~~LSGGQKQRIaLARAly~----~a~I~L 743 (1159)
-|++.+++.|++.++.|+++.|... .++|+-+.+.+.. .+||||||||++||||+.. +|+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 1556788899999999999876433 4788888886654 7899999999999999975 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEccCcccccccCEEEEEe
Q 001091 744 FDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDAADLVLVMK 793 (1159)
Q Consensus 744 LDDp~SALD~~t~~~if~~~i~g~l~-~kTvIlVTH~l~~l~~aD~Iivl~ 793 (1159)
||||+++||+....++.+ .+..+.+ |.|+|+|||+.+.+..||++++|.
T Consensus 183 lDEPt~~LD~~~~~~l~~-~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~ 232 (247)
T cd03275 183 LDEVDAALDNTNVGKVAS-YIREQAGPNFQFIVISLKEEFFSKADALVGVY 232 (247)
T ss_pred EecccccCCHHHHHHHHH-HHHHhccCCcEEEEEECCHHHHhhCCeEEEEE
Confidence 999999999999887754 5666554 889999999999999999999995
No 378
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.86 E-value=4e-22 Score=228.36 Aligned_cols=201 Identities=20% Similarity=0.323 Sum_probs=167.1
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEE-ECCEEEEEe
Q 001091 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK-VHGKKAYVP 665 (1159)
Q Consensus 588 ~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~-v~g~iayv~ 665 (1159)
...|.++|++|.|+++ .-++++ ||-|.+++.+|+|||+|+||||||+++.|+..|..|.+.. .+..++|-.
T Consensus 387 ~pvi~~~nv~F~y~~~-------~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~ 459 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDN-------PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYN 459 (614)
T ss_pred CCeEEEeccccCCCCc-------chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhh
Confidence 3579999999999865 367888 9999999999999999999999999999999999998821 233577777
Q ss_pred cCC---CCCCCcHHHHHh--cCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 001091 666 QSS---WIQTGTIRENIL--FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1159)
Q Consensus 666 Q~p---wi~~gTIreNIl--fG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~ 740 (1159)
|.- --...|.-||+. |....+.+..+.++..|+|..|.+.-|- .+||+|||.||..||..+..|.
T Consensus 460 Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~~kqP~ 529 (614)
T KOG0927|consen 460 QHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLAVKQPH 529 (614)
T ss_pred hhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHHhcCCc
Confidence 753 356778888885 5555677889999999999988766553 4899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeCCeEEE-ecChHHHHh
Q 001091 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ-SGKYEDLIA 808 (1159)
Q Consensus 741 I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e-~Gt~~eL~~ 808 (1159)
|++|||||++||..+-.. ..++|+.. .-+||+|+|...++.+ |++|.+.+||++.. .|.+..-.+
T Consensus 530 lLlLDEPtnhLDi~tid~-laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk~ 596 (614)
T KOG0927|consen 530 LLLLDEPTNHLDIETIDA-LAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYKE 596 (614)
T ss_pred EEEecCCCcCCCchhHHH-HHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHHH
Confidence 999999999999999554 45667654 3589999999999976 99999999998864 577655443
No 379
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.86 E-value=7.1e-22 Score=219.47 Aligned_cols=172 Identities=20% Similarity=0.279 Sum_probs=128.7
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCCccCCC-CcEEEEC----------------CEEEEEecCCC----------CCCCcH
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGEIPRIS-GAAIKVH----------------GKKAYVPQSSW----------IQTGTI 675 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe~~~~~-G~i~~v~----------------g~iayv~Q~pw----------i~~gTI 675 (1159)
..+++|+||+|||||||+.+|.+.+.+.. |++ ... .++.++.|+|- ...-||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~-r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTV-RASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccc-cccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 55999999999999999999999887653 333 221 16889999862 125688
Q ss_pred HHHHhcCCC---------CChHHHHHHHHHhccchH-HH-hccCCCC-------ccccCCCCCCCHHHHHHHHHHHHHc-
Q 001091 676 RENILFGKD---------MRQSFYEEVLEGCALNQD-IE-MWADGDL-------SVVGERGINLSGGQKQRIQLARAVY- 736 (1159)
Q Consensus 676 reNIlfG~~---------~d~~~y~~vl~ac~L~~d-l~-~lp~Gd~-------T~IGe~G~~LSGGQKQRIaLARAly- 736 (1159)
++||..+.. ...+++.+.++.+++..| .. ..++|+- ....++..+||||||||++||||+.
T Consensus 104 ~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 104 TRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHH
Confidence 888876532 123566777888877522 00 0122211 1234567799999999999999997
Q ss_pred ---cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEe--CCe
Q 001091 737 ---SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMK--DGK 796 (1159)
Q Consensus 737 ---~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~--~G~ 796 (1159)
++|+++||||||++||+...+++.+ .+..+.+|.|+|+|||+.+.+..||+|+-+. ||.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~-~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~~~~~~ 247 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGR-MIKTHFKGSQFIVVSLKEGMFNNANVLFRTRFVDGT 247 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHcCCCEEEEEECCHHHHHhCCEEEEEEeeCCE
Confidence 6889999999999999999887765 5666667899999999999999999998774 654
No 380
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.7e-21 Score=192.69 Aligned_cols=190 Identities=21% Similarity=0.277 Sum_probs=133.8
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEEC--C--------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--G-------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~--g-------- 659 (1159)
+.++|++.++.-..+ ..-.-|++++ +|+++.||++++-||+||||||||++|-|.|.|++|+| .+. |
T Consensus 5 l~v~~~~KtFtlH~q-~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I-~v~H~g~~vdl~~a 82 (235)
T COG4778 5 LNVSNVSKTFTLHQQ-GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQI-LVRHEGEWVDLVTA 82 (235)
T ss_pred eeeecchhheEeeec-CCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceE-EEEeCcchhhhhcc
Confidence 556666554432100 0123588999 99999999999999999999999999999999999998 553 2
Q ss_pred -----------EEEEEecC-CCCCCCcHHHHH-----hcCCCCCh--HHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 660 -----------KKAYVPQS-SWIQTGTIRENI-----LFGKDMRQ--SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 660 -----------~iayv~Q~-pwi~~gTIreNI-----lfG~~~d~--~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
+||||+|- -.|..-+--|-. .-|-+-+. ++-...+..-.+-+-+=.|| ..+
T Consensus 83 ~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~La----------PaT 152 (235)
T COG4778 83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLA----------PAT 152 (235)
T ss_pred ChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCC----------Ccc
Confidence 58999994 223332222221 23333222 22223333333434444443 358
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCcccccc-cCEEEEEe
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMK 793 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~-l~~kTvIlVTH~l~~l~~-aD~Iivl~ 793 (1159)
.|||++|||.|||++.-|-+|+||||||++||+.....++ +.|.+. .+|...|=|=|+-+.=.. ||+++-|.
T Consensus 153 FSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVv-eli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 153 FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVV-ELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred cCCchheehhhhhhhhccCceEEecCCcccccccchHHHH-HHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 9999999999999999999999999999999999866554 566554 368888989998776544 89988774
No 381
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.84 E-value=5.6e-21 Score=245.24 Aligned_cols=200 Identities=23% Similarity=0.359 Sum_probs=166.7
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
.++..+|.+..|+.. . . ..++ ++.+++||..++-|++|+||||.++.|.|+.+|++|++ .++|
T Consensus 563 ~~~~~~~L~k~y~~~-----~-~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a-~i~g~~i~~~~~ 634 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGK-----D-G-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEA-LIKGHDITVSTD 634 (885)
T ss_pred ceEEEcceeeeecch-----h-h-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceE-EEecCccccccc
Confidence 468889999999865 1 2 7788 99999999999999999999999999999999999998 7755
Q ss_pred ------EEEEEecCCCC-CCCcHHHHHhcCC---CCC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHH
Q 001091 660 ------KKAYVPQSSWI-QTGTIRENILFGK---DMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1159)
Q Consensus 660 ------~iayv~Q~pwi-~~gTIreNIlfG~---~~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQ 725 (1159)
.+|||||.--+ ..-|.||.+.+-. -+. ++..++.+++.+|.+.... .-.++||||
T Consensus 635 ~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~-----------~~~~ySgG~ 703 (885)
T KOG0059|consen 635 FQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANK-----------QVRTYSGGN 703 (885)
T ss_pred hhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhcc-----------chhhCCCcc
Confidence 38999997544 5679999997532 112 2234556666666544332 246899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEccCcccccc-cCEEEEEeCCeEEEecCh
Q 001091 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1159)
Q Consensus 726 KQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~-~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~ 803 (1159)
|.|++.|-|+..+|++++||||++++||+..+++.+ ++..+.+ +|.+|+.||.++..+. |||+-+|.+|++...|+.
T Consensus 704 kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~-ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~ 782 (885)
T KOG0059|consen 704 KRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWD-IIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSP 782 (885)
T ss_pred hhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecCh
Confidence 999999999999999999999999999999888765 6777666 4599999999999876 999999999999999999
Q ss_pred HHHHh
Q 001091 804 EDLIA 808 (1159)
Q Consensus 804 ~eL~~ 808 (1159)
++|.+
T Consensus 783 q~LKs 787 (885)
T KOG0059|consen 783 QELKS 787 (885)
T ss_pred HHHHh
Confidence 99986
No 382
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.84 E-value=2.1e-20 Score=245.63 Aligned_cols=94 Identities=30% Similarity=0.465 Sum_probs=84.4
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHc---cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEE
Q 001091 714 VGERGINLSGGQKQRIQLARAVY---SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLV 789 (1159)
Q Consensus 714 IGe~G~~LSGGQKQRIaLARAly---~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~I 789 (1159)
.++...+||||||||++||||+. .+|++|||||||++||++..+.+++ .+..+. +|+|+|+|||+++.+..||+|
T Consensus 803 l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~-lL~~L~~~G~TVIiIsHdl~~i~~aDrV 881 (1809)
T PRK00635 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIY-VLQSLTHQGHTVVIIEHNMHVVKVADYV 881 (1809)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHhCCEE
Confidence 57788899999999999999998 6999999999999999999887765 465554 589999999999999889999
Q ss_pred EEEe------CCeEEEecChHHHHh
Q 001091 790 LVMK------DGKIEQSGKYEDLIA 808 (1159)
Q Consensus 790 ivl~------~G~I~e~Gt~~eL~~ 808 (1159)
++|+ +|+++..|+++++..
T Consensus 882 i~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 882 LELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EEEccCCCCCCCEEEEeCCHHHHHh
Confidence 9996 799999999999976
No 383
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.84 E-value=1.8e-17 Score=182.91 Aligned_cols=267 Identities=18% Similarity=0.277 Sum_probs=201.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 278 ALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLI 357 (1159)
Q Consensus 278 ~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~riR~~L~~~i 357 (1159)
+...++.++..++..+.|++++.+++.+.+++. ......+.++..+++..++.......+.+...+.+.+++..+...+
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNS-DNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRL 80 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888889999999999999999776554 2122245555555555555666666666667899999999999999
Q ss_pred HHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHH
Q 001091 358 YKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYIHRIWLLP-VQVFLALVILYKNLGAAPAFAALFSTIFVMVSNT 433 (1159)
Q Consensus 358 y~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~~~~~~w~~p-l~i~ia~~lL~~~lg~~~~l~~l~~~i~~~~~~~ 433 (1159)
|+|.++.+.. ..++|+++|++++|++++++.+......+... +.++.++++++ .++|..+++.++..++..++..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~l~~l~~~~~~~~~~~ 159 (275)
T PF00664_consen 81 FEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLF-FISWKLALILLIILPLLFLISF 159 (275)
T ss_dssp HHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhccc-ccccccccccchhhhhhHhhhh
Confidence 9999998765 24899999999999999999886554444433 33444433333 4454666666767777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-H
Q 001091 434 PLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFW-ASPT-L 511 (1159)
Q Consensus 434 ~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~-~~~~-l 511 (1159)
.+.++.++..++..++.+++.+.++|.++|+|+||.|++|+.+.+++++.+++..+...+............. .... .
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (275)
T PF00664_consen 160 IFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSI 239 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999998877655554444333333322222 2222 3
Q ss_pred HHHHHHHHHH-HhcCCcCHHHHHHHHHHHHHHHHHH
Q 001091 512 VSVITFGVCI-LLKTPLTSGAVLSALATFRILQEPI 546 (1159)
Q Consensus 512 v~~~~f~~~~-~~~~~Lt~~~vft~l~l~~~l~~pl 546 (1159)
+.++.++.+. ...+.+++|.+++++.++..+..|+
T Consensus 240 ~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 240 VLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 4566778888 8889999999999999999999986
No 384
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.82 E-value=2.3e-20 Score=195.98 Aligned_cols=143 Identities=21% Similarity=0.245 Sum_probs=103.4
Q ss_pred cEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEE--EEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccch
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--AYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQ 701 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~i--ayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~ 701 (1159)
.+.+|+||+|||||+++.+|.=-+--.+-.. ..+... .+-...++-.+++|+ |.| +.
T Consensus 23 ~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~--~~f------------------~~ 81 (178)
T cd03239 23 SFNAIVGPNGSGKSNIVDAICFVLGGKAAKL-RRGSLLFLAGGGVKAGINSASVE--ITF------------------DK 81 (178)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCcccccc-cCcchhhhcccccCCCCceEEEE--EEE------------------EC
Confidence 3999999999999999999853221111000 000000 122222333333332 222 22
Q ss_pred HHHhccCCCCccccCCCCCCCHHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEE
Q 001091 702 DIEMWADGDLSVVGERGINLSGGQKQRIQLARAV----YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYT 776 (1159)
Q Consensus 702 dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAl----y~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlV 776 (1159)
++..+|+|+.|+| ||||||||++||||+ +++|+++++|||++++|++..+.+.+ .+..+. +|+|+|++
T Consensus 82 ~~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~-~L~~~~~~g~tiIii 154 (178)
T cd03239 82 SYFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSD-MIKEMAKHTSQFIVI 154 (178)
T ss_pred ceEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEE
Confidence 3778999999999 999999999999998 48999999999999999999887765 565554 35899999
Q ss_pred ccCcccccccCEEEEEeC
Q 001091 777 THQLEFLDAADLVLVMKD 794 (1159)
Q Consensus 777 TH~l~~l~~aD~Iivl~~ 794 (1159)
||+.+.+..+|+++.+++
T Consensus 155 SH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 155 TLKKEMFENADKLIGVLF 172 (178)
T ss_pred ECCHHHHhhCCeEEEEEE
Confidence 999999999999999974
No 385
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.82 E-value=4e-21 Score=207.44 Aligned_cols=167 Identities=17% Similarity=0.136 Sum_probs=118.3
Q ss_pred ccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCC-CcHHHHHhcCCCCChHH
Q 001091 612 IKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQT-GTIRENILFGKDMRQSF 689 (1159)
Q Consensus 612 ~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~-gTIreNIlfG~~~d~~~ 689 (1159)
.++++ ++ ++++|+||+||||||++++|..-+-...... -.++++|++|+..... .|.++++.+-......
T Consensus 18 ~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 89 (212)
T cd03274 18 QVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKM--RQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDK- 89 (212)
T ss_pred eeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHh--hhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCH-
Confidence 45555 55 7999999999999999999982211110111 1246899999876654 4788887654432110
Q ss_pred HHHHHHHh-------------ccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCCC
Q 001091 690 YEEVLEGC-------------ALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS----NSDVYIFDDPFSAVD 752 (1159)
Q Consensus 690 y~~vl~ac-------------~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~----~a~I~LLDDp~SALD 752 (1159)
..++.. +-..++..+|++.++.+ ..||||||||++||||++. +|++++||||+++||
T Consensus 90 --~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~----~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD 163 (212)
T cd03274 90 --PLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI----SNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALD 163 (212)
T ss_pred --HHHHHCCcCCCCCceEEcCCcEEEeeccccccccch----hhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCC
Confidence 011100 11113445666666554 4799999999999999973 589999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEe
Q 001091 753 AHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMK 793 (1159)
Q Consensus 753 ~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~ 793 (1159)
++..+.+ .+.+..+.++.|+|++||+.+....||+|++|.
T Consensus 164 ~~~~~~l-~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~ 203 (212)
T cd03274 164 FRNVSIV-ANYIKERTKNAQFIVISLRNNMFELADRLVGIY 203 (212)
T ss_pred HHHHHHH-HHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEE
Confidence 9997755 556777667889999999988888899999995
No 386
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.82 E-value=7.6e-20 Score=231.53 Aligned_cols=92 Identities=30% Similarity=0.552 Sum_probs=82.7
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHcc---CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEE
Q 001091 714 VGERGINLSGGQKQRIQLARAVYS---NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLV 789 (1159)
Q Consensus 714 IGe~G~~LSGGQKQRIaLARAly~---~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~I 789 (1159)
.++...+||||||||++||||+.+ +|++|||||||++||++..+.+.+ .++.+. +|+|+|++||+++.+..||+|
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~-~L~~l~~~G~TVIvi~H~~~~i~~aD~i 900 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLE-VLQRLVDQGNTVVVIEHNLDVIKTADYI 900 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHhCCEE
Confidence 578889999999999999999997 599999999999999999877654 565554 589999999999999999999
Q ss_pred EEE------eCCeEEEecChHHH
Q 001091 790 LVM------KDGKIEQSGKYEDL 806 (1159)
Q Consensus 790 ivl------~~G~I~e~Gt~~eL 806 (1159)
++| ++|+|++.|+++++
T Consensus 901 i~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 901 IDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EEecCCccCCCCEEEEeCCHHHh
Confidence 999 79999999999876
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.82 E-value=9.3e-20 Score=209.09 Aligned_cols=203 Identities=20% Similarity=0.374 Sum_probs=140.7
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecC
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~ 667 (1159)
..|.++|.++++.+ .+.++| .+++.+|+..+++|++||||||+|++|.|--.|..-++ .+...+|+
T Consensus 74 ~dvk~~sls~s~~g--------~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~-----d~y~ls~e 140 (614)
T KOG0927|consen 74 RDVKIESLSLSFHG--------VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHI-----DFYLLSRE 140 (614)
T ss_pred ccceeeeeeeccCC--------ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCccc-----chhhhccc
Confidence 46899999999864 478899 99999999999999999999999999999888766655 23334443
Q ss_pred CCCCCC-cHHHHHhcCCCCChHHHHHHH----HHhc----------------cchH-----HH-hc-cCCC-CccccCCC
Q 001091 668 SWIQTG-TIRENILFGKDMRQSFYEEVL----EGCA----------------LNQD-----IE-MW-ADGD-LSVVGERG 718 (1159)
Q Consensus 668 pwi~~g-TIreNIlfG~~~d~~~y~~vl----~ac~----------------L~~d-----l~-~l-p~Gd-~T~IGe~G 718 (1159)
.---.. +++.-+.+. .-.+.+|+.-. .+|. ++.| +. .| ..|. .......-
T Consensus 141 ~~ps~~~av~~v~~~~-~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~ 219 (614)
T KOG0927|consen 141 IEPSEKQAVQAVVMET-DHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKV 219 (614)
T ss_pred CCCchHHHHHHHhhhh-HHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHh
Confidence 211111 222222121 11111222111 1111 0000 00 00 0111 11233456
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCc-EEEEEccCcccccc-cCEEEEEeCCe
Q 001091 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-TVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1159)
Q Consensus 719 ~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~k-TvIlVTH~l~~l~~-aD~Iivl~~G~ 796 (1159)
.+||||||.|++|||||..+|+++||||||..||..+-..+ ++.+... ++ |.|+++|.-++++. |-+|+.|++++
T Consensus 220 ~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wL-ee~L~k~--d~~~lVi~sh~QDfln~vCT~Ii~l~~kk 296 (614)
T KOG0927|consen 220 KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWL-EEYLAKY--DRIILVIVSHSQDFLNGVCTNIIHLDNKK 296 (614)
T ss_pred hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHH-HHHHHhc--cCceEEEEecchhhhhhHhhhhheecccc
Confidence 78999999999999999999999999999999999986654 3333332 45 89999999999987 99999999999
Q ss_pred -EEEecChHHHHh
Q 001091 797 -IEQSGKYEDLIA 808 (1159)
Q Consensus 797 -I~e~Gt~~eL~~ 808 (1159)
+...|+|++...
T Consensus 297 l~~y~Gnydqy~~ 309 (614)
T KOG0927|consen 297 LIYYEGNYDQYVK 309 (614)
T ss_pred eeeecCCHHHHhh
Confidence 788999999876
No 388
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.81 E-value=3.9e-20 Score=231.23 Aligned_cols=188 Identities=26% Similarity=0.373 Sum_probs=154.9
Q ss_pred CcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc--CCCCcEEEECC----------EEEEEecC-CCCCCCcH
Q 001091 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--RISGAAIKVHG----------KKAYVPQS-SWIQTGTI 675 (1159)
Q Consensus 610 ~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~--~~~G~i~~v~g----------~iayv~Q~-pwi~~gTI 675 (1159)
....|+| +=-++||.++|+.|+||+||||||+.|.|-.. .++|.| .++| .+|||.|+ -++..-||
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi-~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDI-LISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEE-EECCeeCchhhhccccceeecccccCcccch
Confidence 3567888 99999999999999999999999999999642 456777 7887 47999997 57899999
Q ss_pred HHHHhcCC----C---CChHH---HHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCC-CEEEE
Q 001091 676 RENILFGK----D---MRQSF---YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS-DVYIF 744 (1159)
Q Consensus 676 reNIlfG~----~---~d~~~---y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a-~I~LL 744 (1159)
||-+.|.. | -++++ .++|++-.+|++ =-+..||.-|..||.+||.|+.||=-|..|| .|+.|
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~-------~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFL 954 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKE-------YADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFL 954 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchh-------hhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEe
Confidence 99999863 1 13444 356666666543 2346799999999999999999999999999 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhh-hcCCcEEEEEccCccc--ccccCEEEEEe-CCeEEEecChHHH
Q 001091 745 DDPFSAVDAHTGTHLFKQCLMG-LLSQKTVLYTTHQLEF--LDAADLVLVMK-DGKIEQSGKYEDL 806 (1159)
Q Consensus 745 DDp~SALD~~t~~~if~~~i~g-~l~~kTvIlVTH~l~~--l~~aD~Iivl~-~G~I~e~Gt~~eL 806 (1159)
|||||+||++++-.|++ .++. ...|+|++..-||++- .+..|+++.|+ +|+.+..|+..+-
T Consensus 955 DEPTSGLDsqaA~~i~~-~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~ 1019 (1391)
T KOG0065|consen 955 DEPTSGLDSQAAAIVMR-FLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGEN 1019 (1391)
T ss_pred cCCCCCccHHHHHHHHH-HHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccc
Confidence 99999999999877665 4444 3479999999999984 68999999995 8999999987653
No 389
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.79 E-value=7.7e-19 Score=205.59 Aligned_cols=184 Identities=26% Similarity=0.428 Sum_probs=145.7
Q ss_pred cccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE--------------EEEEecC----CCCCCC
Q 001091 613 KLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------------KAYVPQS----SWIQTG 673 (1159)
Q Consensus 613 ~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~--------------iayv~Q~----pwi~~g 673 (1159)
..+| +|++++||+++|.|-+|||+|=|+.+|.|--++.+|+| .++|+ ++|||.| --+...
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i-~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~ 352 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEI-LLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDM 352 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceE-EECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCC
Confidence 4678 99999999999999999999999999999888899999 99985 8999986 357889
Q ss_pred cHHHHHhcCC--------CCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEe
Q 001091 674 TIRENILFGK--------DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFD 745 (1159)
Q Consensus 674 TIreNIlfG~--------~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLD 745 (1159)
+|++||.+.. ..|..+-++..+. ..+++..=..+.+.. -.+||||-+|+|.|||.++.+|+|+|||
T Consensus 353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~--~~~~l~Ik~~s~~~~----v~~LSGGNQQKVvlarwL~~~p~vLilD 426 (500)
T COG1129 353 SIAENITLASLRRFSRRGLIDRRKERALAER--YIRRLRIKTPSPEQP----IGTLSGGNQQKVVLARWLATDPKVLILD 426 (500)
T ss_pred cHHHheehHhhhhhccccccChHHHHHHHHH--HHHhcCcccCCccch----hhcCCchhhhhHHHHHHHhcCCCEEEEC
Confidence 9999998761 1233333333222 122222222333333 4589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccc-cccCEEEEEeCCeEEEecChH
Q 001091 746 DPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYE 804 (1159)
Q Consensus 746 Dp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~ 804 (1159)
|||.++|.-+...|++ .|+.+. +|+++|++|-.+..+ ..||||+||.+|+|+..=+.+
T Consensus 427 EPTRGIDVGAK~eIy~-li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 427 EPTRGIDVGAKAEIYR-LIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred CCCcCcccchHHHHHH-HHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccc
Confidence 9999999999888875 565554 689999999999775 579999999999999753433
No 390
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.79 E-value=1e-18 Score=186.82 Aligned_cols=155 Identities=17% Similarity=0.152 Sum_probs=107.1
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCC-----Cc----EEE---ECCEEEEEecCCCCCCCcHHHHHhcCCC
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS-----GA----AIK---VHGKKAYVPQSSWIQTGTIRENILFGKD 684 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~-----G~----i~~---v~g~iayv~Q~pwi~~gTIreNIlfG~~ 684 (1159)
++++.+| +.+|+||+|||||||+.+|.-.+.... |. ++. -...+.+..|+.-+.. | ..
T Consensus 16 ~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~----~~ 85 (198)
T cd03276 16 QIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N----PL 85 (198)
T ss_pred EEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C----cC
Confidence 5666666 789999999999999999874332211 21 000 0124666666644333 2 11
Q ss_pred C--ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHH
Q 001091 685 M--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV----YSNSDVYIFDDPFSAVDAHTGTH 758 (1159)
Q Consensus 685 ~--d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAl----y~~a~I~LLDDp~SALD~~t~~~ 758 (1159)
. ++++.+++++. .....++..+||||||||++||||+ +.+|+++|||||++++|......
T Consensus 86 ~~~~~~~~~~~l~~--------------~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~ 151 (198)
T cd03276 86 CVLSQDMARSFLTS--------------NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKI 151 (198)
T ss_pred CHHHHHHHHHHhcc--------------ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHH
Confidence 1 11223333322 1123456679999999999999999 69999999999999999999776
Q ss_pred HHHHHHhhhcC----CcEEEEEccCcccccccCEEEEEeCCe
Q 001091 759 LFKQCLMGLLS----QKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1159)
Q Consensus 759 if~~~i~g~l~----~kTvIlVTH~l~~l~~aD~Iivl~~G~ 796 (1159)
+.+ .+....+ ++|+|++||+++.+...|+|-+|..|+
T Consensus 152 ~~~-~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 152 STD-LLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHH-HHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 655 5555432 358999999999999999999998753
No 391
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.77 E-value=9.7e-17 Score=177.05 Aligned_cols=210 Identities=20% Similarity=0.324 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001091 943 FILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILM 1022 (1159)
Q Consensus 943 ~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~i~vi 1022 (1159)
+.....+.....+.+..+++++++++++++.|.+|||++++|+++||+++|++.+++.+...+..++..+..+++.++++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 136 (275)
T PF00664_consen 57 FSYIYFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILL 136 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcc
Confidence 33333444567889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccchHHHHHHHHHHHhhhhhh
Q 001091 1023 SQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCV 1102 (1159)
Q Consensus 1023 ~~~~~~~~~~~iPl~~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~f~~~~~~~lD~~~~~ 1102 (1159)
....|++.++.+...++++.+..++.+..++..+-.....+...+++.|.++|+.+||+|+.|+++.+++.+..|+..+.
T Consensus 137 ~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~ 216 (275)
T PF00664_consen 137 FFISWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKA 216 (275)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999998888877777788888888888888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHh-cCCCCCCHHHHHHHHHHh
Q 001091 1103 TFHNCGTMEWLCLRINLLFNFAFFLVLI-ILVT-LPRSAIDPSKFLQLFISI 1152 (1159)
Q Consensus 1103 ~~~~~~~~rWL~~rldll~~~~~~~~~~-~~v~-~~~~~~~~g~v~~~~~~i 1152 (1159)
.+.....+.|.....+++..+...++.. .... ...|.+++|.+..++.-+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~ 268 (275)
T PF00664_consen 217 SFKYAKIQALLSSISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLS 268 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHH
Confidence 9999999999999999888774333333 3344 467889999877655443
No 392
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=3.1e-19 Score=203.82 Aligned_cols=196 Identities=23% Similarity=0.442 Sum_probs=139.6
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhC---CccCCCCcEEEECCEEEE
Q 001091 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILG---EIPRISGAAIKVHGKKAY 663 (1159)
Q Consensus 588 ~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llG---e~~~~~G~i~~v~g~iay 663 (1159)
..+|.+.|.+.+|.. +..|++ ++++.+|-..++||++|+||||||++|.. ..=|++-++ .|.--+
T Consensus 78 ~~Di~~~~fdLa~G~--------k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~---~g~~t~ 146 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG--------KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEV---RGDDTE 146 (582)
T ss_pred ccceeeeeeeeeecc--------hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhhe---eccchH
Confidence 346888888888864 468888 99999999999999999999999999998 222222222 111111
Q ss_pred EecCCCCCCCcHHHHHhcCCC---C--C-hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHcc
Q 001091 664 VPQSSWIQTGTIRENILFGKD---M--R-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1159)
Q Consensus 664 v~Q~pwi~~gTIreNIlfG~~---~--d-~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~ 737 (1159)
.-|+ -+-.+|-|.-.+.-.+ - + ++-|.+++.--+..+|....|- ..||||-|-|++||||+.+
T Consensus 147 ~~~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt----------~slSGGWrMrlaLARAlf~ 215 (582)
T KOG0062|consen 147 ALQS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT----------KSLSGGWRMRLALARALFA 215 (582)
T ss_pred HHhh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc----------cccCcchhhHHHHHHHHhc
Confidence 1111 1122233333322210 0 1 2335556666667777776664 3799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeCCeEE-EecChHHHHh
Q 001091 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE-QSGKYEDLIA 808 (1159)
Q Consensus 738 ~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~-e~Gt~~eL~~ 808 (1159)
+|||+||||||.-||.+.-..+ ++.+... ..|+|+|+|.-.||.. |..||.+++=++- ..|+|++..+
T Consensus 216 ~pDlLLLDEPTNhLDv~av~WL-e~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 216 KPDLLLLDEPTNHLDVVAVAWL-ENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred CCCEEeecCCcccchhHHHHHH-HHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 9999999999999999987665 3444433 3799999999999977 8889999887763 5788888875
No 393
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.77 E-value=2.9e-18 Score=192.72 Aligned_cols=168 Identities=24% Similarity=0.412 Sum_probs=133.1
Q ss_pred ccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecC-CCCCCCcHHHHHhcCC--CCCh
Q 001091 612 IKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS-SWIQTGTIRENILFGK--DMRQ 687 (1159)
Q Consensus 612 ~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~-pwi~~gTIreNIlfG~--~~d~ 687 (1159)
+.|.- .=+|..||.++|+||+|-||||+++.|.|+++|++|+ ..+-+++|=||- .--++|||++-+.--. .++.
T Consensus 355 F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~--~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~ 432 (591)
T COG1245 355 FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS--EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGS 432 (591)
T ss_pred eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC--CccceEeecceeecCCCCCcHHHHHHHhhhhhccc
Confidence 34444 4466788999999999999999999999999999997 355679999995 2349999999775332 2555
Q ss_pred HHHH-HHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q 001091 688 SFYE-EVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG 766 (1159)
Q Consensus 688 ~~y~-~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g 766 (1159)
.+|+ ++++--.|++-+ ..+-.+||||+-||||+|-||-++||+||||||.+-||.+. +-+..++|+.
T Consensus 433 s~~~~ei~~pl~l~~i~-----------e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEq-R~~vakvIRR 500 (591)
T COG1245 433 SYFKTEIVKPLNLEDLL-----------ERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQ-RIIVAKVIRR 500 (591)
T ss_pred chhHHhhcCccchHHHH-----------hcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHH-HHHHHHHHHH
Confidence 5554 444444444333 23456899999999999999999999999999999999986 4456677776
Q ss_pred hc--CCcEEEEEccCcccccc-cCEEEEEe
Q 001091 767 LL--SQKTVLYTTHQLEFLDA-ADLVLVMK 793 (1159)
Q Consensus 767 ~l--~~kTvIlVTH~l~~l~~-aD~Iivl~ 793 (1159)
.. ++||.++|-|++-.+.. +|+++|.+
T Consensus 501 ~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 501 FIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred HHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 55 47999999999999987 89999996
No 394
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=3.4e-18 Score=189.69 Aligned_cols=198 Identities=21% Similarity=0.358 Sum_probs=145.7
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--EEEEE
Q 001091 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYV 664 (1159)
Q Consensus 588 ~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--~iayv 664 (1159)
.+.+-+.|++|.|+.. .|..++ +|-|.--+.+|||||+|-||||||++|+|+++|..|.. .-+- +|++.
T Consensus 584 PPvLGlH~VtFgy~gq-------kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~-RKnhrL~iG~F 655 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQ-------KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGEL-RKNHRLRIGWF 655 (807)
T ss_pred CCeeecccccccCCCC-------CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchh-hccceeeeech
Confidence 3567889999999865 688888 99999999999999999999999999999999999987 4332 68888
Q ss_pred ecCCC---CCCCcHHHHH--hcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCC
Q 001091 665 PQSSW---IQTGTIRENI--LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS 739 (1159)
Q Consensus 665 ~Q~pw---i~~gTIreNI--lfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a 739 (1159)
.|..- --..|--|-+ .|..||.+. ++.+-.-+|..- -+|. +-..||||||.||+||--..+.|
T Consensus 656 dQh~~E~L~~Eetp~EyLqr~FNlpyq~A--RK~LG~fGL~sH-------AHTi---kikdLSGGQKaRValaeLal~~P 723 (807)
T KOG0066|consen 656 DQHANEALNGEETPVEYLQRKFNLPYQEA--RKQLGTFGLASH-------AHTI---KIKDLSGGQKARVALAELALGGP 723 (807)
T ss_pred hhhhHHhhccccCHHHHHHHhcCCChHHH--HHHhhhhhhhhc-------cceE---eeeecCCcchHHHHHHHHhcCCC
Confidence 88642 1223444444 244454333 233333333321 1121 23579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccC-EEEEEeCCeEEE-ecChHHHHh
Q 001091 740 DVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAAD-LVLVMKDGKIEQ-SGKYEDLIA 808 (1159)
Q Consensus 740 ~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD-~Iivl~~G~I~e-~Gt~~eL~~ 808 (1159)
||+||||||.+||.++-..+ -++|+.+ +-.||+|||.-..+...| ..+|++|-.|-+ .|.+++...
T Consensus 724 DvlILDEPTNNLDIESIDAL-aEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDYkk 791 (807)
T KOG0066|consen 724 DVLILDEPTNNLDIESIDAL-AEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDYKK 791 (807)
T ss_pred CEEEecCCCCCcchhhHHHH-HHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhhccccHHHHHH
Confidence 99999999999999986655 4556654 347999999999987765 456777766655 366665543
No 395
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.76 E-value=2.3e-19 Score=178.37 Aligned_cols=183 Identities=23% Similarity=0.360 Sum_probs=143.5
Q ss_pred ccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE-------------EEEEecC-CCCCCCcHHHH
Q 001091 614 LTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYVPQS-SWIQTGTIREN 678 (1159)
Q Consensus 614 L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~-------------iayv~Q~-pwi~~gTIreN 678 (1159)
|-. +.++..||..-+|||+||||||||..+.|.. |-+|+| .++|. -||.+|+ .-.|..-|-.-
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi-~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSI-QFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceE-EECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence 444 7889999999999999999999999999977 569999 88883 4898886 44677777777
Q ss_pred HhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHcc-------CCCEEEEeCCCCCC
Q 001091 679 ILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS-------NSDVYIFDDPFSAV 751 (1159)
Q Consensus 679 IlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~-------~a~I~LLDDp~SAL 751 (1159)
+....|. .++-.+.-+.|.+ | +.+-..|..-..||||+.|||-||-.+.+ +++++|+|||-++|
T Consensus 93 L~L~qP~-~~~a~~i~~i~~~------L--~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~L 163 (248)
T COG4138 93 LTLHQPD-KTRTELLNDVAGA------L--ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSL 163 (248)
T ss_pred hhhcCch-HHHHHHHHHHHhh------h--cccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcch
Confidence 7776664 3333333333322 1 11223455567899999999999988776 45699999999999
Q ss_pred CHHHHHHHHHHHHhhhc-CCcEEEEEccCcc-cccccCEEEEEeCCeEEEecChHHHHh
Q 001091 752 DAHTGTHLFKQCLMGLL-SQKTVLYTTHQLE-FLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 752 D~~t~~~if~~~i~g~l-~~kTvIlVTH~l~-~l~~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
|...+.. .++.+..+. .|.|||+..|+++ ++++||++..++.|++..+|.-+|.+.
T Consensus 164 DvAQ~~a-Ldrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 164 DVAQQSA-LDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT 221 (248)
T ss_pred hHHHHHH-HHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence 9987554 466666555 5999999999996 699999999999999999999999886
No 396
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=4.1e-18 Score=194.68 Aligned_cols=192 Identities=21% Similarity=0.336 Sum_probs=153.0
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--EEEEE
Q 001091 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYV 664 (1159)
Q Consensus 588 ~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--~iayv 664 (1159)
.+.+++.+++|.|+++ .. +.+.+ ++.+.--+++++||++|.||||+++.+.|+..|.+|.+ .+++ +++|-
T Consensus 360 ~p~l~i~~V~f~y~p~-----~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~-~~~~r~ri~~f 432 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPS-----EY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIV-GRHPRLRIKYF 432 (582)
T ss_pred CCeeEEEeeeccCCCc-----ch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCccccee-eecccceecch
Confidence 4579999999999876 22 67777 99999999999999999999999999999999999988 6655 68999
Q ss_pred ecCCCC-CCCcHHHHHhcCCCC---ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 001091 665 PQSSWI-QTGTIRENILFGKDM---RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1159)
Q Consensus 665 ~Q~pwi-~~gTIreNIlfG~~~---d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~ 740 (1159)
.|.-.= ++-.+.+-=..-+.+ .++.|++-+..-+|..|+..-+ -..||||||-||++|-+...+|.
T Consensus 433 ~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~~~Ph 502 (582)
T KOG0062|consen 433 AQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTWNNPH 502 (582)
T ss_pred hHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhcCCCc
Confidence 996422 222221111111112 5788999999888887776432 24699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeCCeEEE
Q 001091 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1159)
Q Consensus 741 I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e 799 (1159)
+++|||||.-||.++-..+-+ +++.. +--||+|||+.+++.. |+.+.+.+||+|..
T Consensus 503 lLVLDEPTNhLD~dsl~AL~~-Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 503 LLVLDEPTNHLDRDSLGALAK-ALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred EEEecCCCccccHHHHHHHHH-HHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 999999999999998765533 34333 3479999999999976 99999999999975
No 397
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.73 E-value=7e-18 Score=181.00 Aligned_cols=141 Identities=17% Similarity=0.135 Sum_probs=107.9
Q ss_pred CeEeeCCc-EEEEEcCCCCChhHHHHHHh--------CCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCCh
Q 001091 617 KMKIMKGS-KVAVCGSVGSGKSSLLSSIL--------GEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQ 687 (1159)
Q Consensus 617 nl~i~~G~-~vaIvG~~GSGKSTLL~~ll--------Ge~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~ 687 (1159)
|+++.+|+ .++|+||+|||||||++.|. |.+.|....+ .++|+.|.-- .+
T Consensus 21 ~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----~~~~~~~~~~----------~l------ 79 (200)
T cd03280 21 DIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----SLPVFENIFA----------DI------ 79 (200)
T ss_pred eEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----cCcCccEEEE----------ec------
Confidence 89999996 69999999999999999988 5443332221 2344444310 00
Q ss_pred HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh
Q 001091 688 SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL 767 (1159)
Q Consensus 688 ~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~ 767 (1159)
|++..+.++-.++|+|+|||..+++++ .+|+++++|||++++|+.....+....+..+
T Consensus 80 ---------------------g~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l 137 (200)
T cd03280 80 ---------------------GDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEEL 137 (200)
T ss_pred ---------------------CchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence 111123344468999999999999996 8999999999999999999888876666555
Q ss_pred c-CCcEEEEEccCcccccccCEEEEEeCCeEEEe
Q 001091 768 L-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1159)
Q Consensus 768 l-~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~ 800 (1159)
. ++.|+|++||..+....+|++++|++|++...
T Consensus 138 ~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 138 LERGALVIATTHYGELKAYAYKREGVENASMEFD 171 (200)
T ss_pred HhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEe
Confidence 4 47899999999777788999999999999765
No 398
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.72 E-value=1e-16 Score=184.04 Aligned_cols=207 Identities=23% Similarity=0.337 Sum_probs=165.1
Q ss_pred CCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE-----
Q 001091 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----- 660 (1159)
Q Consensus 587 ~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~----- 660 (1159)
.+..++++|.+..=+. +.+.+++ ||++++||+++|.|-.|-|-+-|+.+|.|+.++.+|+| .++|.
T Consensus 254 g~~vL~V~~L~v~~~~-------~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I-~l~G~~v~~~ 325 (501)
T COG3845 254 GEVVLEVEDLSVKDRR-------GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRI-LLNGKDVLGR 325 (501)
T ss_pred CCeEEEEeeeEeecCC-------CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceE-EECCEecccc
Confidence 4567888888765332 2567899 99999999999999999999999999999999899999 88773
Q ss_pred ----------EEEEecCC----CCCCCcHHHHHhcCCCCCh-------HHHHHHHHHh-ccchHHHhccCCCCccccCCC
Q 001091 661 ----------KAYVPQSS----WIQTGTIRENILFGKDMRQ-------SFYEEVLEGC-ALNQDIEMWADGDLSVVGERG 718 (1159)
Q Consensus 661 ----------iayv~Q~p----wi~~gTIreNIlfG~~~d~-------~~y~~vl~ac-~L~~dl~~lp~Gd~T~IGe~G 718 (1159)
+||||.|. -+..-|+.||+.++.-.++ -+++++-+.+ .+-+.++--+.|-.+ .-
T Consensus 326 ~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~----~a 401 (501)
T COG3845 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDA----PA 401 (501)
T ss_pred CCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCc----ch
Confidence 68999987 4789999999998764332 1112221111 122222222444433 34
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccc-cccCEEEEEeCCeE
Q 001091 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL-DAADLVLVMKDGKI 797 (1159)
Q Consensus 719 ~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I 797 (1159)
.+||||+.||+-+||-+-++||+++...||-+||....+.|.++.+..--+|+.|++|+-.++.+ .-||+|.||.+|+|
T Consensus 402 ~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri 481 (501)
T COG3845 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRI 481 (501)
T ss_pred hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCce
Confidence 68999999999999999999999999999999999999999888776667899999999999875 66999999999999
Q ss_pred EEecChHH
Q 001091 798 EQSGKYED 805 (1159)
Q Consensus 798 ~e~Gt~~e 805 (1159)
+...+.++
T Consensus 482 ~~~~~~~~ 489 (501)
T COG3845 482 VGIVPPEE 489 (501)
T ss_pred eccccccc
Confidence 98776655
No 399
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.70 E-value=1.6e-16 Score=171.76 Aligned_cols=175 Identities=18% Similarity=0.132 Sum_probs=102.0
Q ss_pred eEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCC---cEEEECCEEEEEecCCCC---CCCcHHHHHhcCCCCChHHHH
Q 001091 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG---AAIKVHGKKAYVPQSSWI---QTGTIRENILFGKDMRQSFYE 691 (1159)
Q Consensus 618 l~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G---~i~~v~g~iayv~Q~pwi---~~gTIreNIlfG~~~d~~~y~ 691 (1159)
+++.+| +.+|+|++|||||||+.+|.-.+-.... .....+.-+..-.+++++ ++.. ..+|-|.++.....-.
T Consensus 19 i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~-~~~~~~~n~~~~~~q~ 96 (213)
T cd03277 19 FRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGN-PGNIQVDNLCQFLPQD 96 (213)
T ss_pred EecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeC-CCccccCCceEEEchH
Confidence 444343 7799999999999999988644321110 000000000000011110 0000 0013333322111222
Q ss_pred HHHHHhccch--HHHhccCCCCccccCCCCCCCHHHHHHHHHHHH----HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 001091 692 EVLEGCALNQ--DIEMWADGDLSVVGERGINLSGGQKQRIQLARA----VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLM 765 (1159)
Q Consensus 692 ~vl~ac~L~~--dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARA----ly~~a~I~LLDDp~SALD~~t~~~if~~~i~ 765 (1159)
++.+...+.+ -+..++.+++.. ..+...||||||||+.+|++ +..+|+++++|||+++||+...+.+.+. +.
T Consensus 97 ~~~~~~~~~~~e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~-l~ 174 (213)
T cd03277 97 RVGEFAKLSPIELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDM-LV 174 (213)
T ss_pred HHHHHHhCChHhHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHH-HH
Confidence 3334444432 233455565433 45677999999999887755 4589999999999999999998887654 54
Q ss_pred hhc-C-C-cEEEEEccCccc-ccccC--EEEEEeCCe
Q 001091 766 GLL-S-Q-KTVLYTTHQLEF-LDAAD--LVLVMKDGK 796 (1159)
Q Consensus 766 g~l-~-~-kTvIlVTH~l~~-l~~aD--~Iivl~~G~ 796 (1159)
... + + .|+|++||++.. +..+| +|++|++|+
T Consensus 175 ~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 175 ETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred HHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 443 3 4 489999999854 55565 788888886
No 400
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.69 E-value=2.7e-16 Score=160.52 Aligned_cols=200 Identities=23% Similarity=0.365 Sum_probs=149.6
Q ss_pred CCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE-----
Q 001091 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----- 660 (1159)
Q Consensus 587 ~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~----- 660 (1159)
++.+|++.+..|+|+.. .|..-| |+++|.|+...+||.+|+||||||+.|.|-.-.-.|.| .+.|+
T Consensus 10 ~~~aievsgl~f~y~~~-------dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v-~VlgrsaFhD 81 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVS-------DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVV-QVLGRSAFHD 81 (291)
T ss_pred ccceEEEeccEEecccC-------CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeE-EEcCcCcccc
Confidence 35689999999999875 588889 99999999999999999999999999999876656666 77653
Q ss_pred --------EEEEecC----------CCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCC
Q 001091 661 --------KAYVPQS----------SWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1159)
Q Consensus 661 --------iayv~Q~----------pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~L 721 (1159)
..|..-+ .-||-.-=.|..+||-. .|.+|-++.++.-. -|+ -=|-..+
T Consensus 82 t~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLD--Idl-----------~WRmHkv 148 (291)
T KOG2355|consen 82 TSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILD--IDL-----------RWRMHKV 148 (291)
T ss_pred ccccccCceeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhhee--ccc-----------eEEEeec
Confidence 3343321 11222222344445543 24456555555321 122 1244578
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhh--hcCCcEEEEEccCcccccc-cCEEEEEeCCeEE
Q 001091 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG--LLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1159)
Q Consensus 722 SGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g--~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~ 798 (1159)
|-|||.||+|+-.+++.=+++||||.|--||.-....+.+ .++. --+|.|+|++||--+-+.. +.+++.|++|+++
T Consensus 149 SDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLe-FlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~ 227 (291)
T KOG2355|consen 149 SDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLE-FLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLV 227 (291)
T ss_pred cccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHH-HHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeee
Confidence 9999999999999999999999999999999987666654 3433 2368999999999988765 8999999999999
Q ss_pred EecChHHHHh
Q 001091 799 QSGKYEDLIA 808 (1159)
Q Consensus 799 e~Gt~~eL~~ 808 (1159)
..-+|+++.+
T Consensus 228 ~~l~~~~i~e 237 (291)
T KOG2355|consen 228 DNLKYQKIKE 237 (291)
T ss_pred eccccchhhh
Confidence 9877776654
No 401
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.69 E-value=3.7e-17 Score=179.68 Aligned_cols=186 Identities=21% Similarity=0.232 Sum_probs=136.2
Q ss_pred eEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHH---hcCCCCCh---HHHH
Q 001091 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI---LFGKDMRQ---SFYE 691 (1159)
Q Consensus 618 l~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNI---lfG~~~d~---~~y~ 691 (1159)
+.+.+||+++|+|++|+|||||++.|.+.++...+.+ . .+.|+.+++-.--..+.+.| .+..++|+ .+++
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv-~---~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~ 86 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEV-Y---LIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQ 86 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCe-E---EEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHH
Confidence 4678999999999999999999999999998765544 1 24566676533222334444 12223332 2222
Q ss_pred ---HHHHHh------c-----cchHHHhccCCCCccccCCCCCCCHHH--------HHHHHHHHHHccCCCEEEEeCCCC
Q 001091 692 ---EVLEGC------A-----LNQDIEMWADGDLSVVGERGINLSGGQ--------KQRIQLARAVYSNSDVYIFDDPFS 749 (1159)
Q Consensus 692 ---~vl~ac------~-----L~~dl~~lp~Gd~T~IGe~G~~LSGGQ--------KQRIaLARAly~~a~I~LLDDp~S 749 (1159)
.+++.+ + +-+++..++.+.++.+|+.|.++|||| |||+++||+..++++|.+| ||+
T Consensus 87 ~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~ 164 (249)
T cd01128 87 VAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATA 164 (249)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeh
Confidence 111111 1 235789999999999999999999999 9999999999999999999 999
Q ss_pred CCCHHHHHH-HHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHHHhhcchHHHHH
Q 001091 750 AVDAHTGTH-LFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817 (1159)
Q Consensus 750 ALD~~t~~~-if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~~l 817 (1159)
++|+.++.. ++-+.+++ .++|.|+++|++....++|.|.||+.|++ +++++. +++.|...
T Consensus 165 ~~d~~~~~~~~i~~~~~~--~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~-~~~~~~~~ 225 (249)
T cd01128 165 LVDTGSRMDDVIFEEFKG--TGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLL-DPEELQRM 225 (249)
T ss_pred eecCCCcccchHHHHHhc--CCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhC-CHHHHHHH
Confidence 999766543 33122222 57999999999999999999999999998 567776 45455444
No 402
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.68 E-value=1.3e-15 Score=182.38 Aligned_cols=94 Identities=30% Similarity=0.544 Sum_probs=85.1
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEE
Q 001091 714 VGERGINLSGGQKQRIQLARAVYSNS---DVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLV 789 (1159)
Q Consensus 714 IGe~G~~LSGGQKQRIaLARAly~~a---~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~I 789 (1159)
+|..-.+||||+.|||=||.-|.+++ -+|+|||||.+|-.+--+++.+ ++..+. +|.|||+|-|+++.++.||+|
T Consensus 816 LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~-VL~rLvd~GnTViVIEHNLdVIk~AD~I 894 (935)
T COG0178 816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLE-VLHRLVDKGNTVIVIEHNLDVIKTADWI 894 (935)
T ss_pred cCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecccceEeecCEE
Confidence 68889999999999999999999988 8999999999999998887764 455544 699999999999999999999
Q ss_pred EEE------eCCeEEEecChHHHHh
Q 001091 790 LVM------KDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 790 ivl------~~G~I~e~Gt~~eL~~ 808 (1159)
+=| +.|+|+.+||++|+.+
T Consensus 895 IDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 895 IDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred EEcCCCCCCCCceEEEecCHHHHHh
Confidence 999 3689999999999987
No 403
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.67 E-value=1.5e-16 Score=164.98 Aligned_cols=133 Identities=25% Similarity=0.318 Sum_probs=95.9
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE--EE-EEecCCCCCCCcHHHHHhcCCCCChHHHHHH
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--KA-YVPQSSWIQTGTIRENILFGKDMRQSFYEEV 693 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~--ia-yv~Q~pwi~~gTIreNIlfG~~~d~~~y~~v 693 (1159)
++.+.+|.+++|+||+||||||+++++..-.-..+|.. ..... .+ ++++..--+
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~---------------------- 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSAT-RRRSGVKAGCIVAAVSAEL---------------------- 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhh-hccCcccCCCcceeeEEEE----------------------
Confidence 45556667999999999999999999766554444443 11110 01 011111000
Q ss_pred HHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-c
Q 001091 694 LEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS----NSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-L 768 (1159)
Q Consensus 694 l~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~----~a~I~LLDDp~SALD~~t~~~if~~~i~g~-l 768 (1159)
..+. ..|||||+||++|||++.. +|+++|+|||++++|++.+..+.+. +... .
T Consensus 72 ----------------i~~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~-l~~~~~ 129 (162)
T cd03227 72 ----------------IFTR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEA-ILEHLV 129 (162)
T ss_pred ----------------ehhe-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHh
Confidence 0000 1299999999999999986 7899999999999999998887664 4443 3
Q ss_pred CCcEEEEEccCcccccccCEEEEEeC
Q 001091 769 SQKTVLYTTHQLEFLDAADLVLVMKD 794 (1159)
Q Consensus 769 ~~kTvIlVTH~l~~l~~aD~Iivl~~ 794 (1159)
++.|+|++||+.+....+|+++.|+.
T Consensus 130 ~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 130 KGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred cCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 46899999999999999999999964
No 404
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.66 E-value=7.2e-16 Score=203.40 Aligned_cols=99 Identities=28% Similarity=0.418 Sum_probs=87.7
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccc
Q 001091 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSN---SDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL 783 (1159)
Q Consensus 708 ~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~---a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l 783 (1159)
-||.+ +|..-.+||||+.|||-||.-|.++ +.+|+|||||.+|+++.-+++.+ +++.+. +|.|||+|.|+++++
T Consensus 1688 LgYl~-LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~-~l~~L~~~g~tvivieH~~~~i 1765 (1809)
T PRK00635 1688 LGYLP-LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLV-QLRTLVSLGHSVIYIDHDPALL 1765 (1809)
T ss_pred CCeee-CCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHH
Confidence 36655 6999999999999999999999876 78999999999999999887765 465554 689999999999999
Q ss_pred cccCEEEEEe------CCeEEEecChHHHHh
Q 001091 784 DAADLVLVMK------DGKIEQSGKYEDLIA 808 (1159)
Q Consensus 784 ~~aD~Iivl~------~G~I~e~Gt~~eL~~ 808 (1159)
+.||+|+-|. .|+|+.+||++|+.+
T Consensus 1766 ~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1766 KQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred HhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 9999999994 689999999999987
No 405
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=9.8e-16 Score=172.57 Aligned_cols=76 Identities=24% Similarity=0.233 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCC
Q 001091 720 NLSGGQKQRIQLARAVYS----NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDG 795 (1159)
Q Consensus 720 ~LSGGQKQRIaLARAly~----~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G 795 (1159)
+||||||||++|||+++. +|++++||||+++||++....+.+ .+..+.+++|+|++||+++....||++++|++|
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~-~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~ 248 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGK-KLKELSRSHQVLCITHLPQVAAMADNHFLVEKE 248 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHH-HHHHHhCCCEEEEEechHHHHHhcCcEEEEEEe
Confidence 599999999999997543 999999999999999999877654 566666789999999999988889999999876
Q ss_pred e
Q 001091 796 K 796 (1159)
Q Consensus 796 ~ 796 (1159)
.
T Consensus 249 ~ 249 (276)
T cd03241 249 V 249 (276)
T ss_pred c
Confidence 4
No 406
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.65 E-value=2.5e-16 Score=197.56 Aligned_cols=196 Identities=24% Similarity=0.363 Sum_probs=154.8
Q ss_pred cccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCC---CCcEEEECC----------EEEEEecCC-CCCCCcH
Q 001091 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVHG----------KKAYVPQSS-WIQTGTI 675 (1159)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~---~G~i~~v~g----------~iayv~Q~p-wi~~gTI 675 (1159)
...++| +.-++||+.+.+.||.||||||||+++.|..+.. .|+| ..+| .++|++|+. ++...|+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~i-sy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEI-TYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCce-eECCCcccccccCceEEeccccccccceeEE
Confidence 468999 9999999999999999999999999999988643 4566 6665 589999975 5678899
Q ss_pred HHHHhcCC--CCChHHHHHHHHHhc---cch---HHHhccCCCCccccCCCC-CCCHHHHHHHHHHHHHccCCCEEEEeC
Q 001091 676 RENILFGK--DMRQSFYEEVLEGCA---LNQ---DIEMWADGDLSVVGERGI-NLSGGQKQRIQLARAVYSNSDVYIFDD 746 (1159)
Q Consensus 676 reNIlfG~--~~d~~~y~~vl~ac~---L~~---dl~~lp~Gd~T~IGe~G~-~LSGGQKQRIaLARAly~~a~I~LLDD 746 (1159)
||-+-|.. +.+..||+++-+.-. ..+ -+-.|.+..+|.||.+.. ..|||||.||++|-++..++.++..||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 99999853 122222222211111 111 123467788999998754 689999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcc--cccccCEEEEEeCCeEEEecChHHHHh
Q 001091 747 PFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLE--FLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 747 p~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~--~l~~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
++-+||+.|+=++.+ +++.+- -+.|.++.-||.+ .....|+|++|.+|+++.+|+.++.+.
T Consensus 287 ~t~GLDSsTal~iik-~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIK-ALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred ccccccHHHHHHHHH-HHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 999999999877764 565443 4788888889875 467899999999999999999999875
No 407
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=5.1e-14 Score=168.57 Aligned_cols=220 Identities=16% Similarity=0.198 Sum_probs=167.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHH
Q 001091 927 EQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLA 1006 (1159)
Q Consensus 927 ~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~ 1006 (1159)
...+.+..++.++++++.++|..++.+.+.+...+++..++++++|+.++|||.|-+|.|++|.++|...+-+.++..+.
T Consensus 188 ~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls 267 (716)
T KOG0058|consen 188 KRACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLS 267 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHH
Confidence 34566677778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHH---HHHHH-HHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhc
Q 001091 1007 GLAFALIQLLSIIILMSQAAWQVFPL---FLVIL-GISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCF 1082 (1159)
Q Consensus 1007 ~~~~~~~~~l~~i~vi~~~~~~~~~~---~iPl~-~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf 1082 (1159)
..+.+.++.++.++.|+..+|.+..+ .+|++ .+..++.+||.+.||+++-- + +-......|.+++++|||+|
T Consensus 268 ~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a--~--A~a~~vaeE~ls~~rTVRsf 343 (716)
T KOG0058|consen 268 DGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDA--L--ARANQVAEEVLSAMRTVRSF 343 (716)
T ss_pred HHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH--H--HHHHHHHHHHHhhhhhHHHh
Confidence 99999999999999999999987644 45544 55567888999999988743 3 33557889999999999999
Q ss_pred cchHHHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCCHHHHHHHHH
Q 001091 1083 NQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLI-ILVTLPRSAIDPSKFLQLFI 1150 (1159)
Q Consensus 1083 ~~e~~f~~~~~~~lD~~~~~~~~~~~~~rWL~~rldll~~~~~~~~~~-~~v~~~~~~~~~g~v~~~~~ 1150 (1159)
+.|++=.++|.+.+++--+-.--...+.--+.-..++.+++.+..+.. -..+...|.+++|...++++
T Consensus 344 a~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFll 412 (716)
T KOG0058|consen 344 AAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLL 412 (716)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHH
Confidence 999866666666655443332221122222222345555543322211 12233467899987776654
No 408
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.63 E-value=8.1e-14 Score=176.94 Aligned_cols=215 Identities=18% Similarity=0.201 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHH
Q 001091 930 IGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLA 1009 (1159)
Q Consensus 930 l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~ 1009 (1159)
+..++++.++..++..++...+...+.+...++++++++++++.|++||+++++|.++||+++|++.+++.+...+..++
T Consensus 204 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l 283 (711)
T TIGR00958 204 IFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLL 283 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666667777888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccch
Q 001091 1010 FALIQLLSIIILMSQAAWQVFPLFLVIL----GISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQE 1085 (1159)
Q Consensus 1010 ~~~~~~l~~i~vi~~~~~~~~~~~iPl~----~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e 1085 (1159)
..++.+++.++++....|++.++++..+ ++..++.+++.+.+++.+. ..+...+++.|+++|+.|||+|+.|
T Consensus 284 ~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~e~l~g~~~Ik~~~~e 359 (711)
T TIGR00958 284 RNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQE----AVAKANQVAEEALSGMRTVRSFAAE 359 (711)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcChHHHHHhccc
Confidence 9999999998888888888765433222 2333445555555555543 3445679999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001091 1086 NRFLLRSHSLIDDYSCVTFHN---CGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSKFLQLFI 1150 (1159)
Q Consensus 1086 ~~f~~~~~~~lD~~~~~~~~~---~~~~rWL~~rldll~~~~~~~~~~~~v~~~~~~~~~g~v~~~~~ 1150 (1159)
+++.+++.+..|+..+..... .....|...-+..++.+++...+...+ ..|.+++|.+..+++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv--~~g~it~G~lva~~~ 425 (711)
T TIGR00958 360 EGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLV--LTGKVSSGNLVSFLL 425 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHH
Confidence 999999999988877665433 233445544444444333333332233 357788886654443
No 409
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.63 E-value=6.8e-16 Score=173.92 Aligned_cols=159 Identities=29% Similarity=0.425 Sum_probs=127.5
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEE------------------------CC------EEEEEecCCC
Q 001091 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV------------------------HG------KKAYVPQSSW 669 (1159)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v------------------------~g------~iayv~Q~pw 669 (1159)
.++|+.++|+|++|-||||-++.|.||+.|.=|.. .- +| ++-||.--|-
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~-~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk 175 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY-EDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPK 175 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC-CCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHH
Confidence 46899999999999999999999999999988853 11 11 2456666788
Q ss_pred CCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q 001091 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (1159)
Q Consensus 670 i~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~S 749 (1159)
.+.||++|=+.--. +..+++++++.-+|++-++ ..-..||||+=||+|||-|+.+++|+|++|||+|
T Consensus 176 ~~KG~v~elLk~~d--e~g~~devve~l~L~nvl~-----------r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsS 242 (591)
T COG1245 176 VVKGKVGELLKKVD--ERGKFDEVVERLGLENVLD-----------RDVSELSGGELQRVAIAAALLRDADVYFFDEPSS 242 (591)
T ss_pred HhcchHHHHHHhhh--hcCcHHHHHHHhcchhhhh-----------hhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcc
Confidence 89999999774321 1257888888888765433 2345799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhcC-CcEEEEEccCcccccc-cCEEEEEe
Q 001091 750 AVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMK 793 (1159)
Q Consensus 750 ALD~~t~~~if~~~i~g~l~-~kTvIlVTH~l~~l~~-aD~Iivl~ 793 (1159)
=||....-.. -+.|+++.+ +|+||+|-|++..|.. +|.|-++=
T Consensus 243 yLDi~qRl~~-ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 243 YLDIRQRLNA-ARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred cccHHHHHHH-HHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 9999764333 456788887 6999999999999987 88888774
No 410
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.57 E-value=1.1e-12 Score=163.40 Aligned_cols=224 Identities=15% Similarity=0.222 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHH
Q 001091 930 IGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLA 1009 (1159)
Q Consensus 930 l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~ 1009 (1159)
...++++.++..++.+++.++....+.+....++..+++++++.|.++|+..+.|+++||+++|++.+++.+...+..++
T Consensus 57 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i 136 (571)
T TIGR02203 57 PLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLV 136 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777788888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccchHHHH
Q 001091 1010 FALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFL 1089 (1159)
Q Consensus 1010 ~~~~~~l~~i~vi~~~~~~~~~~~iPl~~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~f~ 1089 (1159)
..++.+++.++++.+..|++.++++...++..++...+.+..++..+-.....+...+++.|+++|+.+||+++.++++.
T Consensus 137 ~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~ 216 (571)
T TIGR02203 137 RETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYET 216 (571)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHH
Confidence 99999999999999999988777666555555555555555555555555566789999999999999999999999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCCHHHHHHHHHHhc
Q 001091 1090 LRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLI-ILVTLPRSAIDPSKFLQLFISIS 1153 (1159)
Q Consensus 1090 ~~~~~~lD~~~~~~~~~~~~~rWL~~rldll~~~~~~~~~~-~~v~~~~~~~~~g~v~~~~~~is 1153 (1159)
+++.+..|...+..........|+..-.+++..+...+..+ .......|.+++|.+..+.+.++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~ 281 (571)
T TIGR02203 217 RRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMI 281 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHH
Confidence 99999999999888877777777777666665433222211 12223467889987766655443
No 411
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=3.1e-14 Score=159.95 Aligned_cols=88 Identities=20% Similarity=0.210 Sum_probs=67.3
Q ss_pred ccCCCCccccCCCCC----CCHHHHHHHHHHHHH---------ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcE
Q 001091 706 WADGDLSVVGERGIN----LSGGQKQRIQLARAV---------YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT 772 (1159)
Q Consensus 706 lp~Gd~T~IGe~G~~----LSGGQKQRIaLARAl---------y~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kT 772 (1159)
-|+.|+..+.-++.+ +|+|||||+++||++ +++|+++|||||+++||++..+.+.+. +... + .
T Consensus 165 g~~~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~-l~~~--~-q 240 (270)
T cd03242 165 GPHRDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDA-IEGR--V-Q 240 (270)
T ss_pred CCChhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHH-hhcC--C-C
Confidence 477777776555554 899999999999997 489999999999999999998876553 4332 2 4
Q ss_pred EEEEccCcccccc-c---CEEEEEeCCeE
Q 001091 773 VLYTTHQLEFLDA-A---DLVLVMKDGKI 797 (1159)
Q Consensus 773 vIlVTH~l~~l~~-a---D~Iivl~~G~I 797 (1159)
++++||+.+.+.. + ++|+.+++|+|
T Consensus 241 ~ii~~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 241 TFVTTTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred EEEEeCCchhccchhccCccEEEEeCcEE
Confidence 5566665554433 4 78999999986
No 412
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.56 E-value=2.6e-15 Score=161.38 Aligned_cols=152 Identities=16% Similarity=0.153 Sum_probs=106.0
Q ss_pred CCeEeeCCcEEEEEcCCCCChhHHHHHHhC-CccCCCCcEEEE-CCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHH
Q 001091 616 DKMKIMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKV-HGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEV 693 (1159)
Q Consensus 616 ~nl~i~~G~~vaIvG~~GSGKSTLL~~llG-e~~~~~G~i~~v-~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~v 693 (1159)
+++++.+|++++|+||+|||||||+++|.+ .+....|..+.- ...++|+.|.
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi-------------------------- 75 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRI-------------------------- 75 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEE--------------------------
Confidence 378888999999999999999999999993 333333432000 1112222111
Q ss_pred HHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcE
Q 001091 694 LEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKT 772 (1159)
Q Consensus 694 l~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kT 772 (1159)
+..++..+ .+-++-..+++++|| ++.+.+...+|+++|+|||++++|+.....+....+..+. ++.+
T Consensus 76 ---------~~~~~~~d--~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~ 143 (202)
T cd03243 76 ---------FTRIGAED--SISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCR 143 (202)
T ss_pred ---------EEEecCcc--cccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCe
Confidence 11112111 122333456777765 7777788899999999999999999988777665554433 4789
Q ss_pred EEEEccCcccccccCEEEEEeCCeEEEecChHH
Q 001091 773 VLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1159)
Q Consensus 773 vIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~e 805 (1159)
+|++||+.+....+|++..+++|++...+..++
T Consensus 144 vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 144 TLFATHFHELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred EEEECChHHHHHHhhcCCCeEEEEEEEEecCCe
Confidence 999999999999999999999999988765433
No 413
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.56 E-value=1.3e-14 Score=161.54 Aligned_cols=176 Identities=27% Similarity=0.371 Sum_probs=132.5
Q ss_pred cccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCC--------ccCCCCcEEEECCE-E-EEEec--CCCCCCCcHHH
Q 001091 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE--------IPRISGAAIKVHGK-K-AYVPQ--SSWIQTGTIRE 677 (1159)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe--------~~~~~G~i~~v~g~-i-ayv~Q--~pwi~~gTIre 677 (1159)
..+|+| ||++++|+.++|+|+||+||||++..|+|. |.|++|.| .+..+ + |.+|- +|-+-.-||.|
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v-~vp~nt~~a~iPge~Ep~f~~~tile 474 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKV-EVPKNTVSALIPGEYEPEFGEVTILE 474 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCce-eccccchhhccCcccccccCchhHHH
Confidence 468999 999999999999999999999999999986 46888888 66433 2 34443 34444446666
Q ss_pred HHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 001091 678 NILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT 757 (1159)
Q Consensus 678 NIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~ 757 (1159)
.+- ..+=|-.--.++++..+|.+-. .--.+-..||-|||-|..||+++-.+|.+++-||--|-||..|+.
T Consensus 475 hl~-s~tGD~~~AveILnraGlsDAv---------lyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~ 544 (593)
T COG2401 475 HLR-SKTGDLNAAVEILNRAGLSDAV---------LYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAV 544 (593)
T ss_pred HHh-hccCchhHHHHHHHhhccchhh---------hhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHH
Confidence 542 1222333345666666664321 112334579999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhc--CCcEEEEEccCcccccc--cCEEEEEeCCeEE
Q 001091 758 HLFKQCLMGLL--SQKTVLYTTHQLEFLDA--ADLVLVMKDGKIE 798 (1159)
Q Consensus 758 ~if~~~i~g~l--~~kTvIlVTH~l~~l~~--aD~Iivl~~G~I~ 798 (1159)
.+-.+ |..+. .+-|.+.||||.++... -|+++.+.=|++.
T Consensus 545 rVArk-iselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 545 RVARK-ISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred HHHHH-HHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 88765 55555 48899999999999865 5999988766654
No 414
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.55 E-value=2.2e-15 Score=163.92 Aligned_cols=151 Identities=17% Similarity=0.133 Sum_probs=105.3
Q ss_pred cccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEE-EEecCCCCCCCcHHHHHhcCCCCChH
Q 001091 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA-YVPQSSWIQTGTIRENILFGKDMRQS 688 (1159)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~ia-yv~Q~pwi~~gTIreNIlfG~~~d~~ 688 (1159)
.++.+| +++.++|++++|+||+||||||+++.+.- + .+-.+++ |||.+.-.. .+-|
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~--------~-~~la~~g~~vpa~~~~~--~~~~----------- 74 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV--------I-VLMAQIGCFVPCDSADI--PIVD----------- 74 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH--------H-HHHHHhCCCcCcccEEE--eccc-----------
Confidence 567788 99999999999999999999999998761 1 1111222 555442110 0111
Q ss_pred HHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHH--ccCCCEEEEeCC---CCCCCHHHHHHHHHHH
Q 001091 689 FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV--YSNSDVYIFDDP---FSAVDAHTGTHLFKQC 763 (1159)
Q Consensus 689 ~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAl--y~~a~I~LLDDp---~SALD~~t~~~if~~~ 763 (1159)
++++..++.++ ...++|+|++||..+|+++ ..+|+++||||| |+++|+.......-+.
T Consensus 75 ---~il~~~~l~d~--------------~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~ 137 (222)
T cd03285 75 ---CILARVGASDS--------------QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEY 137 (222)
T ss_pred ---eeEeeeccccc--------------hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHH
Confidence 11111222111 1357999999999999999 899999999999 8889988765433222
Q ss_pred HhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEec
Q 001091 764 LMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 764 i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~G 801 (1159)
+.. .+++|+|++||..+....||++..+++|++...+
T Consensus 138 l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~ 174 (222)
T cd03285 138 IAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALT 174 (222)
T ss_pred HHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEE
Confidence 222 2478999999976666779999999999997654
No 415
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.54 E-value=2.4e-12 Score=158.67 Aligned_cols=212 Identities=10% Similarity=0.080 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHH
Q 001091 938 GGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLS 1017 (1159)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~ 1017 (1159)
++..++.++..+.....+.+...+++.++++++++.|.+||+++++|+++||+++|++.+++.+...+..++..++.+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~ 143 (529)
T TIGR02868 64 IGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSA 143 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666677888899999999999999999999999999999999999999999999888888888888888
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccchHHHHHHHHHHH
Q 001091 1018 IIILMSQAAWQVFPLFLVILGIS-IWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLI 1096 (1159)
Q Consensus 1018 ~i~vi~~~~~~~~~~~iPl~~~~-~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~f~~~~~~~l 1096 (1159)
.+++++...|++.++++..++++ +....++.+..|+..+-.....+...+++.|+++|+.|||+|+.|+++.+++.+..
T Consensus 144 ~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~ 223 (529)
T TIGR02868 144 AVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAAD 223 (529)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHH
Confidence 88888888888776654433332 22333444444444444445667889999999999999999999999999999988
Q ss_pred hhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCCCHHHHHHHH
Q 001091 1097 DDYSCVTFHNCGTMEWLCLRINLLFNFAFFLV-LIILVTLPRSAIDPSKFLQLF 1149 (1159)
Q Consensus 1097 D~~~~~~~~~~~~~rWL~~rldll~~~~~~~~-~~~~v~~~~~~~~~g~v~~~~ 1149 (1159)
++..+........+.+...-..++..+...++ .+.......|.+++|.+..++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~ 277 (529)
T TIGR02868 224 RELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLV 277 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHH
Confidence 88877766554444444433444333222211 111122335778887655443
No 416
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.53 E-value=3.8e-12 Score=158.98 Aligned_cols=213 Identities=17% Similarity=0.248 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHHHHH
Q 001091 933 FIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFAL 1012 (1159)
Q Consensus 933 y~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~ 1012 (1159)
++++.++..++.+.+.......+.+.+.+++.+++++++++|.+||+..+.|+++||+++|++.+++.....+..++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~ 150 (592)
T PRK10790 71 YVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSA 150 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555666666777788888999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHhhhHHHHHH---HHHHHHH-HHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccchHHH
Q 001091 1013 IQLLSIIILMSQAAWQVFPLF---LVILGIS-IWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRF 1088 (1159)
Q Consensus 1013 ~~~l~~i~vi~~~~~~~~~~~---iPl~~~~-~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~f 1088 (1159)
+.+++.++++....|++.+++ +|+.++. .+.++...+..++.+ ...+...+|+.|+++|+.+||+|+.|+++
T Consensus 151 ~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~e~l~~~~~ik~~~~~~~~ 226 (592)
T PRK10790 151 ALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVR----AYLADINDGFNEVINGMSVIQQFRQQARF 226 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcChHHHHHhhhhHHH
Confidence 888888888887787765432 3333222 223333333333333 34567789999999999999999999999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 001091 1089 LLRSHSLIDDYSCVTFHNCGTMEWL-CLRINLLFNFAFFLVLIILVTLPRSAIDPSKFLQLF 1149 (1159)
Q Consensus 1089 ~~~~~~~lD~~~~~~~~~~~~~rWL-~~rldll~~~~~~~~~~~~v~~~~~~~~~g~v~~~~ 1149 (1159)
.+++.+..++..+..+.....+.+. ..-..++..++..+..+.......|.++.|.+..+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~is~g~l~a~~ 288 (592)
T PRK10790 227 GERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGFSASGTIEVGVLYAFI 288 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHH
Confidence 9998887776666544333222221 222333333221111111111235778887655443
No 417
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.52 E-value=3.9e-12 Score=162.08 Aligned_cols=266 Identities=16% Similarity=0.223 Sum_probs=166.8
Q ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhccchheeecccc-cccCCc---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 877 WTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDE-KRKVSR---EQLIGVFIFLSGGSSFFILGRAVLLA 952 (1159)
Q Consensus 877 ~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~-~~~~~~---~~~l~vy~~l~~~~~~~~~~~~~~~~ 952 (1159)
+.-++.|++...+. +..++++.++..++.++..+++....+. -+.... ..+...++++.++..++.+++.++..
T Consensus 144 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 144 LLKFIPLITRQKKL--IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666543222 2222333334444444445554433321 011111 11223344445556667778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 001091 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1159)
Q Consensus 953 ~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~i~vi~~~~~~~~~~ 1032 (1159)
..+.+...+++.++++++++.|++||++.++|.++||++ |.+.+-+.+...+...+..++.++..++++....|++.++
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 300 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLL 300 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 899999999999999999999999999999999999998 8877777666665555555566666666677777776554
Q ss_pred HH---HHH-HHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccchHHHHHHHHHHHhhhhhhHHHHHH
Q 001091 1033 FL---VIL-GISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCG 1108 (1159)
Q Consensus 1033 ~i---Pl~-~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~f~~~~~~~lD~~~~~~~~~~~ 1108 (1159)
++ |+. ++.+++++.+.+..++.. ...+-..+++.|+++|+.|||+||.|+++.+++.+..++..+..+....
T Consensus 301 ~l~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 376 (708)
T TIGR01193 301 SLLSIPVYAVIIILFKRTFNKLNHDAM----QANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQK 376 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 332 223344444444444443 3446678899999999999999999999999988888776666554333
Q ss_pred H---hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 001091 1109 T---MEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSKFLQLFIS 1151 (1159)
Q Consensus 1109 ~---~rWL~~rldll~~~~~~~~~~~~v~~~~~~~~~g~v~~~~~~ 1151 (1159)
. ..++..-+..++.+++...+...+ .+|.+++|.+..+.+-
T Consensus 377 ~~~~~~~~~~~~~~~~~i~il~~g~~lv--~~g~ls~G~lva~~~l 420 (708)
T TIGR01193 377 ADQGQQAIKAVTKLILNVVILWTGAYLV--MRGKLTLGQLITFNAL 420 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHH
Confidence 2 233333344343333333333334 3678899876554433
No 418
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.51 E-value=4.8e-14 Score=179.25 Aligned_cols=94 Identities=31% Similarity=0.464 Sum_probs=84.1
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEEE
Q 001091 714 VGERGINLSGGQKQRIQLARAVYSNS--DVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVL 790 (1159)
Q Consensus 714 IGe~G~~LSGGQKQRIaLARAly~~a--~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~Ii 790 (1159)
.+....+|||||+|||.||||+.++| ++|||||||++||++..+++.+ .+..+. +|+|||+|+|+++.++.||+|+
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~-~L~~L~~~G~TVIvVeHd~~~i~~aD~vi 559 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIN-TLKRLRDLGNTVIVVEHDEETIRAADYVI 559 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHH-HHHHHHhCCCEEEEEECCHHHHhhCCEEE
Confidence 46677899999999999999999986 8999999999999999887765 455543 4899999999999999999999
Q ss_pred EE------eCCeEEEecChHHHHh
Q 001091 791 VM------KDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 791 vl------~~G~I~e~Gt~~eL~~ 808 (1159)
+| ++|+|+.+|+++++..
T Consensus 560 ~LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 560 DIGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred EecccccCCCCEEeeccCHHHHhc
Confidence 99 8999999999999865
No 419
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.51 E-value=4.2e-14 Score=180.06 Aligned_cols=94 Identities=27% Similarity=0.442 Sum_probs=84.3
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEEE
Q 001091 714 VGERGINLSGGQKQRIQLARAVYSNS--DVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVL 790 (1159)
Q Consensus 714 IGe~G~~LSGGQKQRIaLARAly~~a--~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~Ii 790 (1159)
.+..-.+|||||||||+||||+.++| ++|||||||++||++..+.+++ .+..+. +|+|||+|+|+++.+..||+|+
T Consensus 483 l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~-~L~~L~~~G~TVIvVeH~~~~i~~aD~vi 561 (943)
T PRK00349 483 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIE-TLKHLRDLGNTLIVVEHDEDTIRAADYIV 561 (943)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 35667899999999999999999997 9999999999999999887765 565554 4899999999999999999999
Q ss_pred EE------eCCeEEEecChHHHHh
Q 001091 791 VM------KDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 791 vl------~~G~I~e~Gt~~eL~~ 808 (1159)
+| ++|+|+.+|+++++.+
T Consensus 562 ~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 562 DIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred EeccccCCCCCEEeeccCHHHHhc
Confidence 99 9999999999999876
No 420
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.50 E-value=7.1e-12 Score=159.79 Aligned_cols=221 Identities=12% Similarity=0.070 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHH
Q 001091 930 IGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLA 1009 (1159)
Q Consensus 930 l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~ 1009 (1159)
...++++.++..++..++.++....+.+...+++.++++++++.|++||++.++|.++||++.| +.+.+.+...+...+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~ 275 (710)
T TIGR03796 197 LLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTA 275 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHH
Confidence 4445555666777788888888899999999999999999999999999999999999999998 567777777777777
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccchHHHH
Q 001091 1010 FALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFL 1089 (1159)
Q Consensus 1010 ~~~~~~l~~i~vi~~~~~~~~~~~iPl~~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~f~ 1089 (1159)
..++.+++.++++....|++.++++.+++++..+..++.+..++..+-.....+...+++.|+++|+.|||+|+.|+++.
T Consensus 276 ~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~ 355 (710)
T TIGR03796 276 LDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFF 355 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHH
Confidence 77888888888888888877666544433333333333333333322333344567899999999999999999999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCCCHHHHHHHHHH
Q 001091 1090 LRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLV-LIILVTLPRSAIDPSKFLQLFIS 1151 (1159)
Q Consensus 1090 ~~~~~~lD~~~~~~~~~~~~~rWL~~rldll~~~~~~~~-~~~~v~~~~~~~~~g~v~~~~~~ 1151 (1159)
+++.+..++..+..+.....+.|+..-.+++..+...+. .+.......|.++.|.+..+.+.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l 418 (710)
T TIGR03796 356 SRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSL 418 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999888888887777666666666665555544322211 11222234677888876654443
No 421
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.50 E-value=5.6e-12 Score=157.39 Aligned_cols=193 Identities=14% Similarity=0.100 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHH
Q 001091 930 IGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLA 1009 (1159)
Q Consensus 930 l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~ 1009 (1159)
+..++++.++..++..++.+.....+.+....++.++++++++.|++||+..++|+++||+++|++.+++.+...+..++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~ 145 (588)
T PRK11174 66 FILLILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMA 145 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34444555556666777777778888999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccchHHHH
Q 001091 1010 FALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFL 1089 (1159)
Q Consensus 1010 ~~~~~~l~~i~vi~~~~~~~~~~~iPl~~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~f~ 1089 (1159)
..++..++.++++....|++.++++.++++...+...+.+..++..+-.....+-..+++.|+++|+.+||+|++|+++.
T Consensus 146 ~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~ 225 (588)
T PRK11174 146 LAVLVPLLILIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAET 225 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHH
Confidence 88888888888888888876554433322222333333333344433334455668899999999999999999999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHH
Q 001091 1090 LRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFN 1122 (1159)
Q Consensus 1090 ~~~~~~lD~~~~~~~~~~~~~rWL~~rldll~~ 1122 (1159)
+++.+..++..+......-...+...-..++..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (588)
T PRK11174 226 ESIRSASEDFRQRTMEVLRMAFLSSAVLEFFAS 258 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888777665444333334444444443
No 422
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.50 E-value=2.4e-14 Score=153.16 Aligned_cols=132 Identities=17% Similarity=0.199 Sum_probs=90.5
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC-CCCcEEEECCEEEEEecCCC-CCCCcHHHHHhcCCCCChHHHHHHH
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-ISGAAIKVHGKKAYVPQSSW-IQTGTIRENILFGKDMRQSFYEEVL 694 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~-~~G~i~~v~g~iayv~Q~pw-i~~gTIreNIlfG~~~d~~~y~~vl 694 (1159)
++++.+|+.++|+||+|||||||+++|.|.... ..|. .+... .++.|..- +.+.|++||+.+|.....+..+++-
T Consensus 19 ~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~--~v~a~-~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~ 95 (199)
T cd03283 19 DIDMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGA--PVCAS-SFELPPVKIFTSIRVSDDLRDGISYFYAELRRLK 95 (199)
T ss_pred eEEEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCC--EEecC-ccCcccceEEEeccchhccccccChHHHHHHHHH
Confidence 567778999999999999999999999886642 2343 23222 35556433 4567999999988643221112211
Q ss_pred HHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEE
Q 001091 695 EGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTV 773 (1159)
Q Consensus 695 ~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTv 773 (1159)
+-++.+. ..+|+++|+|||++++|+.....+....+..+. ++.|+
T Consensus 96 ------~iL~~~~----------------------------~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~ti 141 (199)
T cd03283 96 ------EIVEKAK----------------------------KGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIG 141 (199)
T ss_pred ------HHHHhcc----------------------------CCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 1112111 079999999999999999998777665555443 47899
Q ss_pred EEEccCcccccc
Q 001091 774 LYTTHQLEFLDA 785 (1159)
Q Consensus 774 IlVTH~l~~l~~ 785 (1159)
|++||+++.+..
T Consensus 142 iivTH~~~~~~~ 153 (199)
T cd03283 142 IISTHDLELADL 153 (199)
T ss_pred EEEcCcHHHHHh
Confidence 999999886543
No 423
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.50 E-value=6.8e-12 Score=154.66 Aligned_cols=217 Identities=16% Similarity=0.130 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHH
Q 001091 929 LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGL 1008 (1159)
Q Consensus 929 ~l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~ 1008 (1159)
+...+++++++..++.+++.+.....+.+...+++.++++++++.|.+||++.++|+++||+++|++.+++.+...+..+
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~ 125 (529)
T TIGR02857 46 ALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQL 125 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44555666666777777888888888999999999999999999999999999999999999999999999888878788
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHH-HHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccc
Q 001091 1009 AFALIQLLSIIILMSQAAWQVFPLF---LVILGIS-IWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQ 1084 (1159)
Q Consensus 1009 ~~~~~~~l~~i~vi~~~~~~~~~~~---iPl~~~~-~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~ 1084 (1159)
+..++.+++.++++....|++.+++ +|+.++. .++.++..+..++.+. ..+-..+++.|+++|+.+||+|+.
T Consensus 126 ~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~e~l~g~~~ik~~~~ 201 (529)
T TIGR02857 126 VLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWA----ALSRLSGHFLDRLRGLPTLKLFGR 201 (529)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCHHHHHHccc
Confidence 8777777777777777777655443 3333222 2233333333333332 334577899999999999999999
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCCCHHHHHHHH
Q 001091 1085 ENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLV-LIILVTLPRSAIDPSKFLQLF 1149 (1159)
Q Consensus 1085 e~~f~~~~~~~lD~~~~~~~~~~~~~rWL~~rldll~~~~~~~~-~~~~v~~~~~~~~~g~v~~~~ 1149 (1159)
|+++.+++.+..++..+..+...-.+.|...-.+++..+...+. .+......+|.+++|.+..+.
T Consensus 202 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~ 267 (529)
T TIGR02857 202 AKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVL 267 (529)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999988888777766555555566555555554432221 111122226778888655443
No 424
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.49 E-value=1.2e-11 Score=157.26 Aligned_cols=216 Identities=13% Similarity=0.157 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHH
Q 001091 930 IGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLA 1009 (1159)
Q Consensus 930 l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~ 1009 (1159)
...++++.++..++..++.+.....+.+....++.++++++++.|++||++.++|.+++|+ +|++.+.+.+...+..++
T Consensus 182 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~ 260 (694)
T TIGR01846 182 ALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVV 260 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence 3445555666777788888888899999999999999999999999999999999999999 699999988877776666
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccch
Q 001091 1010 FALIQLLSIIILMSQAAWQVFPLFLVILGIS----IWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQE 1085 (1159)
Q Consensus 1010 ~~~~~~l~~i~vi~~~~~~~~~~~iPl~~~~----~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e 1085 (1159)
..++.++..++++.+..|++.++++..++++ .++++.+.+..++.. ...+...+++.|+++|+.|||+||.|
T Consensus 261 ~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~e~l~g~~~ik~~~~e 336 (694)
T TIGR01846 261 LDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKF----ERSAAATSFLVESVTGIETIKATATE 336 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHcccC
Confidence 5556555566777777887765543322222 233444433333332 23456779999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCCHHHHHHHHH
Q 001091 1086 NRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVL-IILVTLPRSAIDPSKFLQLFI 1150 (1159)
Q Consensus 1086 ~~f~~~~~~~lD~~~~~~~~~~~~~rWL~~rldll~~~~~~~~~-~~~v~~~~~~~~~g~v~~~~~ 1150 (1159)
+++.+++.+..++..+..+.....+.|...-.+++..+..++.. +.......|.+++|.+..+.+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~ 402 (694)
T TIGR01846 337 PQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNM 402 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999988888777666666766666665543322221 112222357789886654433
No 425
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.49 E-value=1.4e-11 Score=153.42 Aligned_cols=195 Identities=10% Similarity=0.127 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 001091 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1159)
Q Consensus 953 ~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~i~vi~~~~~~~~~~ 1032 (1159)
..+.+...++.+++++++++.|++||+++++|.+++|+++|++.+.......+..++..++.+++.++++....|++.++
T Consensus 82 ~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 161 (585)
T TIGR01192 82 RLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIV 161 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566699999999999999999999999999999999998887777777777777777777788888888776
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccchHHHHHHHHHHHhhhhhhHHHHHHHhHH
Q 001091 1033 FLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEW 1112 (1159)
Q Consensus 1033 ~iPl~~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~f~~~~~~~lD~~~~~~~~~~~~~rW 1112 (1159)
++.+++++.++.+.+.+..++.++......+...+++.|+++|+.|||+|+.++++.+++.+..++..+..+.......+
T Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (585)
T TIGR01192 162 LMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWAL 241 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555555666666666666666666667778999999999999999999999999999888888766655443322222
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHhcCCCCCCHHHHHHHH
Q 001091 1113 LCLRINLLFNF---AFFLVLIILVTLPRSAIDPSKFLQLF 1149 (1159)
Q Consensus 1113 L~~rldll~~~---~~~~~~~~~v~~~~~~~~~g~v~~~~ 1149 (1159)
...-..++..+ ++.+.+... ...|.+++|.+..++
T Consensus 242 ~~~~~~~~~~~~~~~v~~~g~~~--v~~g~it~g~l~a~~ 279 (585)
T TIGR01192 242 ASGLNRMASTISMMCILVIGTVL--VIKGELSVGEVIAFI 279 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHcCCCCHHHHHHHH
Confidence 22222222221 112222222 336778888665443
No 426
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.49 E-value=1.2e-11 Score=153.66 Aligned_cols=214 Identities=13% Similarity=0.099 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHHHHH
Q 001091 933 FIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFAL 1012 (1159)
Q Consensus 933 y~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~ 1012 (1159)
+.+++++..++.++..++....+.+....++.++++++++.|++||++.++|.+++|+++|++.++..+...+..++...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~ 145 (574)
T PRK11160 66 VRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAAL 145 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666667788899999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccchHHHHHH
Q 001091 1013 IQLLSIIILMSQAAWQVFPLFLVIL-GISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLR 1091 (1159)
Q Consensus 1013 ~~~l~~i~vi~~~~~~~~~~~iPl~-~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~f~~~ 1091 (1159)
+.+++.+++++...|++.++++..+ +++..+..++.+..+...+-.....+-+.+++.|+++|+.+||+|+.|+++.++
T Consensus 146 ~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~ 225 (574)
T PRK11160 146 VVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQ 225 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHH
Confidence 8888888888888888776542222 122222233333333333334445567788999999999999999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH
Q 001091 1092 SHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSKFL 1146 (1159)
Q Consensus 1092 ~~~~lD~~~~~~~~~~~~~rWL~~rldll~~~~~~~~~~~~v~~~~~~~~~g~v~ 1146 (1159)
+.+..++..+..+.....+.+...-.+++..+..+...........|.+++|...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l~ 280 (574)
T PRK11160 226 LEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGVGGNAQPGALI 280 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHH
Confidence 9999988888777665555555555565554432222122111124556666543
No 427
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.48 E-value=1.3e-11 Score=156.70 Aligned_cols=216 Identities=15% Similarity=0.173 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHH
Q 001091 930 IGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLA 1009 (1159)
Q Consensus 930 l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~ 1009 (1159)
..+++++.++..++.+++.+.....+.+...+++.++++++++.|++||++.++|.++||++ |.+.+++.+...+...+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~ 257 (686)
T TIGR03797 179 ALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTL 257 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHH
Confidence 44555566667778888888888999999999999999999999999999999999999997 89999888877766666
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccch
Q 001091 1010 FALIQLLSIIILMSQAAWQVFPLFLVIL----GISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQE 1085 (1159)
Q Consensus 1010 ~~~~~~l~~i~vi~~~~~~~~~~~iPl~----~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e 1085 (1159)
.....+++.++++....|++.++++..+ ++.++.++...+..++.++.+ +...+++.|+++|+.|||+|+.|
T Consensus 258 ~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~e~l~gi~~ik~~~~e 333 (686)
T TIGR03797 258 LSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELS----GKISGLTVQLINGISKLRVAGAE 333 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHccHHHHHHhccc
Confidence 6666666677777777887765543322 233445555555566655544 45789999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCCHHHHHHHHH
Q 001091 1086 NRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVL-IILVTLPRSAIDPSKFLQLFI 1150 (1159)
Q Consensus 1086 ~~f~~~~~~~lD~~~~~~~~~~~~~rWL~~rldll~~~~~~~~~-~~~v~~~~~~~~~g~v~~~~~ 1150 (1159)
+++.+++.+..++..+..+.....+.|.....+++..+...+.. +.......|.++.|.+..+.+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~ 399 (686)
T TIGR03797 334 NRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNT 399 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999888887777777777766665543322221 112222367788886554443
No 428
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.47 E-value=1.1e-13 Score=141.75 Aligned_cols=191 Identities=22% Similarity=0.298 Sum_probs=139.2
Q ss_pred ccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEE---------------------EECCEEEEEecCCC
Q 001091 612 IKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI---------------------KVHGKKAYVPQSSW 669 (1159)
Q Consensus 612 ~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~---------------------~v~g~iayv~Q~pw 669 (1159)
....+ |++...||+-++||.+|||||-+.++|.|-.+- +=.|. .+...|+...|+|-
T Consensus 21 K~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kd-nW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~ 99 (330)
T COG4170 21 KAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKD-NWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EeeeeeeeeeccceeeeeeccCCCchhHHHHHHhccccc-ceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCch
Confidence 34556 999999999999999999999999999996541 11110 11225899999985
Q ss_pred C---CCCcH----HHHHhcCC---C------CChHHHHHHHHHhccc--hHHH-hccCCCCccccCCCCCCCHHHHHHHH
Q 001091 670 I---QTGTI----RENILFGK---D------MRQSFYEEVLEGCALN--QDIE-MWADGDLSVVGERGINLSGGQKQRIQ 730 (1159)
Q Consensus 670 i---~~gTI----reNIlfG~---~------~d~~~y~~vl~ac~L~--~dl~-~lp~Gd~T~IGe~G~~LSGGQKQRIa 730 (1159)
- .+.+| -+||-+-. . +...+--+.++..+.. +||. +.| ..|--|+-|+|-
T Consensus 100 sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP-----------~ElTeGE~QKVM 168 (330)
T COG4170 100 SCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP-----------YELTEGECQKVM 168 (330)
T ss_pred hhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc-----------chhccCcceeee
Confidence 3 23333 34553211 1 1223334556666664 3543 223 235557778899
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhh--hcCCcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHHHH
Q 001091 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG--LLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807 (1159)
Q Consensus 731 LARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g--~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~ 807 (1159)
||-|+...|.++|-||||.++|+.|..+||. .+.. .-.|.|+++++|++..+.+ ||+|-||--|+-+|++.-++++
T Consensus 169 IA~A~AnqPrLLIADEPTN~~e~~Tq~QifR-LLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~ 247 (330)
T COG4170 169 IAIALANQPRLLIADEPTNSMEPTTQAQIFR-LLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELV 247 (330)
T ss_pred eehhhccCCceEeccCCCcccCccHHHHHHH-HHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHh
Confidence 9999999999999999999999999999986 3433 3357899999999999865 9999999999999999999999
Q ss_pred hhcchHHH
Q 001091 808 ADQNSELV 815 (1159)
Q Consensus 808 ~~~~~~~~ 815 (1159)
+.....|.
T Consensus 248 ~~PhHPYT 255 (330)
T COG4170 248 TMPHHPYT 255 (330)
T ss_pred cCCCCchH
Confidence 84444454
No 429
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.46 E-value=2.6e-11 Score=151.15 Aligned_cols=220 Identities=15% Similarity=0.119 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHH
Q 001091 930 IGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLA 1009 (1159)
Q Consensus 930 l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~ 1009 (1159)
+..++++.+...++.+++.++....+.+....++..+++++++.|.++|+....|+++||+++|++.+++.....+..++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~ 140 (576)
T TIGR02204 61 FAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMAL 140 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555566667777778888999999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccchHHHH
Q 001091 1010 FALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFL 1089 (1159)
Q Consensus 1010 ~~~~~~l~~i~vi~~~~~~~~~~~iPl~~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~f~ 1089 (1159)
..++.+++.++++....|++.++++..+++.+.+...+.+..+...+-....+....+++.|+++|+.+||+|+.|+++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~ 220 (576)
T TIGR02204 141 RNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAER 220 (576)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHH
Confidence 88888888888888888876554432222222222222222233333334455667899999999999999999999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCCCHHHHHHHH
Q 001091 1090 LRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLV-LIILVTLPRSAIDPSKFLQLF 1149 (1159)
Q Consensus 1090 ~~~~~~lD~~~~~~~~~~~~~rWL~~rldll~~~~~~~~-~~~~v~~~~~~~~~g~v~~~~ 1149 (1159)
+++.+..+...+..........|+..-...+..+...+. .+.......|.+++|.+..+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~ 281 (576)
T TIGR02204 221 SRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFV 281 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999888777766555555566555544433222111 111222235778888654443
No 430
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.44 E-value=4.4e-11 Score=149.35 Aligned_cols=197 Identities=8% Similarity=0.125 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 001091 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1159)
Q Consensus 953 ~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~i~vi~~~~~~~~~~ 1032 (1159)
....+...++..++++++++.|.++|++.+.|++++|+++|++.+.......+..++...+..++.++++....|++.++
T Consensus 82 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 161 (588)
T PRK13657 82 RLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLV 161 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555699999999999999999999999999999999988777777777777676767777777778877666
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccchHHHHHHHHHHHhhhhhhHHHHHHHhHH
Q 001091 1033 FLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEW 1112 (1159)
Q Consensus 1033 ~iPl~~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~f~~~~~~~lD~~~~~~~~~~~~~rW 1112 (1159)
++..+++++.+..++.+..++.++-.....+...+++.|+++|+.+||+|+.++++.+++.+..+...+........+.|
T Consensus 162 ~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (588)
T PRK13657 162 LVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWAL 241 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555556666666667666666667788999999999999999999999999999988888877766554444444
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHhcCCCCCCHHHHHHHH
Q 001091 1113 LCLRINLLFNFAFFL-VLIILVTLPRSAIDPSKFLQLF 1149 (1159)
Q Consensus 1113 L~~rldll~~~~~~~-~~~~~v~~~~~~~~~g~v~~~~ 1149 (1159)
...-.+++..+...+ ..+......+|.+++|.+..+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~ 279 (588)
T PRK13657 242 ASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFV 279 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHH
Confidence 444334333222111 1111222346778888665443
No 431
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.43 E-value=5.2e-11 Score=148.60 Aligned_cols=212 Identities=14% Similarity=0.159 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHHHHHH
Q 001091 934 IFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALI 1013 (1159)
Q Consensus 934 ~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~ 1013 (1159)
++++++..++.+++.+.....+.+....++.++++++++.|.++|++...|.+++|+++|++.+.+.+...+..++..++
T Consensus 72 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~ 151 (582)
T PRK11176 72 IGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGA 151 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666666777888899999999999999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccchHHHH
Q 001091 1014 QLLSIIILMSQAAWQVFPLFLVILGIS----IWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFL 1089 (1159)
Q Consensus 1014 ~~l~~i~vi~~~~~~~~~~~iPl~~~~----~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~f~ 1089 (1159)
.+++.++++....|++.++++..++++ .+.++.+.+..++.+ ...+...+++.|.++|+.+||+|+.++++.
T Consensus 152 ~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~ 227 (582)
T PRK11176 152 SIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQ----NTMGQVTTSAEQMLKGHKEVLIFGGQEVET 227 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCHHHHHHhCcCHHHH
Confidence 888888888888888765544333332 233444433344433 345668899999999999999999999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHhcCCCCCCHHHHHHHH
Q 001091 1090 LRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLII-LVTLPRSAIDPSKFLQLF 1149 (1159)
Q Consensus 1090 ~~~~~~lD~~~~~~~~~~~~~rWL~~rldll~~~~~~~~~~~-~v~~~~~~~~~g~v~~~~ 1149 (1159)
+++.+..+...+......-.+.|...-.++++.+...++..+ ......|.+++|.+..++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~ 288 (582)
T PRK11176 228 KRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVF 288 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999999888887777777777777777665433222221 222235778888764433
No 432
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=2.3e-13 Score=151.70 Aligned_cols=202 Identities=22% Similarity=0.340 Sum_probs=137.9
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCC
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~p 668 (1159)
.|.++|.+.+-. .....-| ||.|-.|...++|||+|-||||||+-|..---...-.| .+-||.|+.
T Consensus 264 DIKiEnF~ISA~--------Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnI-----DvLlCEQEv 330 (807)
T KOG0066|consen 264 DIKIENFDISAQ--------GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNI-----DVLLCEQEV 330 (807)
T ss_pred cceeeeeeeecc--------cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCC-----ceEeeeeee
Confidence 477787776643 2345667 99999999999999999999999998875432111122 367899987
Q ss_pred CCCCCcHHHHHhcCC---------------------CCChHHHHHHHH---Hhc---cchHH-Hhc-cCCCCccccCCCC
Q 001091 669 WIQTGTIRENILFGK---------------------DMRQSFYEEVLE---GCA---LNQDI-EMW-ADGDLSVVGERGI 719 (1159)
Q Consensus 669 wi~~gTIreNIlfG~---------------------~~d~~~y~~vl~---ac~---L~~dl-~~l-p~Gd~T~IGe~G~ 719 (1159)
.--+.|--+-|+=.. .--.+|.++|.+ +.+ .+.-- ..| --|..-+.-+|..
T Consensus 331 vad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt 410 (807)
T KOG0066|consen 331 VADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPT 410 (807)
T ss_pred eecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCc
Confidence 766666555554221 111122222221 111 01000 011 1244455556554
Q ss_pred -CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeCCeE
Q 001091 720 -NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1159)
Q Consensus 720 -~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I 797 (1159)
..|||-|-||+||||||-.|-++.|||||..||-..--.+ ++.+.|+ .||.++|+|.-.||.. |..||.+++-+.
T Consensus 411 ~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWL-dNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkL 487 (807)
T KOG0066|consen 411 TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWL-DNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKL 487 (807)
T ss_pred cccCCceeeehhHHHHHhcCceeeeecCCccccccceeeeh-hhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhh
Confidence 5899999999999999999999999999999998764433 4555555 4899999999999976 899999998887
Q ss_pred E-EecChHHHH
Q 001091 798 E-QSGKYEDLI 807 (1159)
Q Consensus 798 ~-e~Gt~~eL~ 807 (1159)
. ..|+|.-..
T Consensus 488 hyYrGNY~~FK 498 (807)
T KOG0066|consen 488 HYYRGNYTLFK 498 (807)
T ss_pred hhhcchHHHHH
Confidence 5 468875543
No 433
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.41 E-value=4.2e-11 Score=148.79 Aligned_cols=222 Identities=14% Similarity=0.136 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHH
Q 001091 929 LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGL 1008 (1159)
Q Consensus 929 ~l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~ 1008 (1159)
++++++++.++..++.+++.+.....+.+...+++.++++++++.|++||++.++|.++||+++|++.++......+..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~ 117 (569)
T PRK10789 38 WIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTL 117 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444444445555555555566677889999999999999999999999999999999999999999997777667777
Q ss_pred HHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccchHH
Q 001091 1009 AFALIQLLSIIILM-SQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENR 1087 (1159)
Q Consensus 1009 ~~~~~~~l~~i~vi-~~~~~~~~~~~iPl~~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~ 1087 (1159)
+...+..++.++++ ....|++.++++..+++..++.+.+.+..++..+-.....+.+.+++.|+++|+.+||+|+.|++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~ 197 (569)
T PRK10789 118 VDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDR 197 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHH
Confidence 76655555554444 35667665444333333333333333322322223333456788999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001091 1088 FLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFA-FFLVLIILVTLPRSAIDPSKFLQLFI 1150 (1159)
Q Consensus 1088 f~~~~~~~lD~~~~~~~~~~~~~rWL~~rldll~~~~-~~~~~~~~v~~~~~~~~~g~v~~~~~ 1150 (1159)
+.+++.+..+...+..+.....+.+...-...+..+. +++..+.......|.+++|.+..+.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~ 261 (569)
T PRK10789 198 QSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVM 261 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHH
Confidence 9999999888777766644333333322222222211 11111111222367788886654443
No 434
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.41 E-value=8.3e-11 Score=149.64 Aligned_cols=211 Identities=13% Similarity=0.071 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHHHH
Q 001091 932 VFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFA 1011 (1159)
Q Consensus 932 vy~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~~~ 1011 (1159)
.++++.++..++.+++.++....+.+...++..++++++++.|++| +..++|.+++|+ +|++.+.+.+...+...+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~ 269 (694)
T TIGR03375 192 GVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALID 269 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHH
Confidence 3444455566777788888889999999999999999999999998 789999999999 79999999888777766666
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHH---HHH-HHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccchHH
Q 001091 1012 LIQLLSIIILMSQAAWQVFPLFL---VIL-GISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENR 1087 (1159)
Q Consensus 1012 ~~~~l~~i~vi~~~~~~~~~~~i---Pl~-~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~ 1087 (1159)
++.++..++++.+..|++.++.+ |+. ++.+++++.+.+..++..+ ..+...+++.|+++|+.|||+|+.|++
T Consensus 270 ~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~e~l~gi~~ik~~~~e~~ 345 (694)
T TIGR03375 270 LPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMR----ESAQRNAVLVESLSGLETIKALNAEGR 345 (694)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHccccHH
Confidence 66666667777777777655433 322 2233455555555555544 446678999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001091 1088 FLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFN---FAFFLVLIILVTLPRSAIDPSKFLQLFI 1150 (1159)
Q Consensus 1088 f~~~~~~~lD~~~~~~~~~~~~~rWL~~rldll~~---~~~~~~~~~~v~~~~~~~~~g~v~~~~~ 1150 (1159)
+.+++.+..++..+..+.....+.+...-.+++.. +.+.+.+...+ ..|.+++|.+..+++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v--~~g~ls~G~l~a~~~ 409 (694)
T TIGR03375 346 FQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLI--SDGELTMGGLIACVM 409 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHH
Confidence 99999888887777666554444444333333332 22222222233 357789886554433
No 435
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.41 E-value=9e-11 Score=145.30 Aligned_cols=172 Identities=12% Similarity=0.106 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHHHH
Q 001091 932 VFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFA 1011 (1159)
Q Consensus 932 vy~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~~~ 1011 (1159)
.++++.++..++.++..+.....+.+....++.++++++++.|++||++.++|++++|+++|++.++..+. .+..++..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~-~~~~~~~~ 136 (555)
T TIGR01194 58 SFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLF-IFPPIAIA 136 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHH-HHHHHHHH
Confidence 35555566666777777777888999999999999999999999999999999999999999999998775 46667777
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccchH--HHH
Q 001091 1012 LIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQEN--RFL 1089 (1159)
Q Consensus 1012 ~~~~l~~i~vi~~~~~~~~~~~iPl~~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~--~f~ 1089 (1159)
++.+++.++++++..|.+.++++.++++...+..+..+..++..+-.....+.+.+++.|++.|+.+||+|+.++ ...
T Consensus 137 ~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~ 216 (555)
T TIGR01194 137 LAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAH 216 (555)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHH
Confidence 777778888888888887666443332222222222111122222222344678899999999999999999854 445
Q ss_pred HHHHHHHhhhhhhHH
Q 001091 1090 LRSHSLIDDYSCVTF 1104 (1159)
Q Consensus 1090 ~~~~~~lD~~~~~~~ 1104 (1159)
+++.+..++..+...
T Consensus 217 ~~~~~~~~~~~~~~~ 231 (555)
T TIGR01194 217 GAIQESANNIADLHI 231 (555)
T ss_pred HHhhHHHHHHHHHHH
Confidence 556555555555443
No 436
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.40 E-value=1.2e-12 Score=142.51 Aligned_cols=155 Identities=28% Similarity=0.376 Sum_probs=94.3
Q ss_pred eEeeCCcEEEEEcCCCCChhHHHHHH---hCCccCC--CC-----cEEEE--------CCEEEEEecCCC----CCCC--
Q 001091 618 MKIMKGSKVAVCGSVGSGKSSLLSSI---LGEIPRI--SG-----AAIKV--------HGKKAYVPQSSW----IQTG-- 673 (1159)
Q Consensus 618 l~i~~G~~vaIvG~~GSGKSTLL~~l---lGe~~~~--~G-----~i~~v--------~g~iayv~Q~pw----i~~g-- 673 (1159)
+.+. +.+++|+||+||||||++.|| ||+-+.. .+ -| .- ...|....+++- +...
T Consensus 20 ~~~~-~~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI-~~~~~~~~~~~a~V~~~~~~~~~~~~~~~~~~ 97 (220)
T PF02463_consen 20 LSFS-PGLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLI-NKSGSDQDSKSAEVELIFDNSDEEFELDKKEI 97 (220)
T ss_dssp EETT-SSEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB---BTTB---SEEEEEEEEECTTEESSSSSSEE
T ss_pred EecC-CCCEEEEcCCCCCHHHHHHHHHHHHHHccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 3443 359999999999999999999 5642210 11 01 11 112222222211 1111
Q ss_pred cHHHH---------HhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHH----HHHccCCC
Q 001091 674 TIREN---------ILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA----RAVYSNSD 740 (1159)
Q Consensus 674 TIreN---------IlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLA----RAly~~a~ 740 (1159)
.|+.. -+-+.+...+.|.+.++...+..+ .||||||.+++|| .+-+.+++
T Consensus 98 ~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~-----------------~lSgGEk~~~~Lal~lA~~~~~~~p 160 (220)
T PF02463_consen 98 EISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPE-----------------FLSGGEKSLVALALLLALQRYKPSP 160 (220)
T ss_dssp EEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTT-----------------GS-HHHHHHHHHHHHHHHHTCS--S
T ss_pred cccccccccccccccccccccccccccccccccccccc-----------------ccccccccccccccccccccccccc
Confidence 11100 111233345556666655555443 9999999999987 44467899
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEE
Q 001091 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM 792 (1159)
Q Consensus 741 I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl 792 (1159)
+|+||||.++||....+++.+ .+....++.-+|++||+..+...||+.+.+
T Consensus 161 ~~ilDEvd~~LD~~~~~~l~~-~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 161 FLILDEVDAALDEQNRKRLAD-LLKELSKQSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp EEEEESTTTTS-HHHHHHHHH-HHHHHTTTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred ccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 999999999999999887754 566776788999999999999999998876
No 437
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.38 E-value=1.5e-12 Score=139.67 Aligned_cols=141 Identities=16% Similarity=0.147 Sum_probs=99.5
Q ss_pred CcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChH
Q 001091 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQS 688 (1159)
Q Consensus 610 ~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~ 688 (1159)
.+++.+| ++++++|+.++|+||+||||||+++++.+..-. +++ | .|||-.. .+-++.|||..-
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l--a~~----G--~~vpa~~--~~l~~~d~I~~~------ 78 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM--AQI----G--CFVPAEY--ATLPIFNRLLSR------ 78 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH--HHc----C--CCcchhh--cCccChhheeEe------
Confidence 3567888 999999999999999999999999998765311 111 1 1222211 122666676421
Q ss_pred HHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc
Q 001091 689 FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768 (1159)
Q Consensus 689 ~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l 768 (1159)
+..+| .+.++..++|+|+||+ +.+-+...+++++|||||++++|+..+..+....+..+.
T Consensus 79 -----------------~~~~d--~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~ 138 (204)
T cd03282 79 -----------------LSNDD--SMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLI 138 (204)
T ss_pred -----------------cCCcc--ccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH
Confidence 11121 1335567899999975 555567789999999999999999988877766665544
Q ss_pred -CCcEEEEEccCccccccc
Q 001091 769 -SQKTVLYTTHQLEFLDAA 786 (1159)
Q Consensus 769 -~~kTvIlVTH~l~~l~~a 786 (1159)
.++++|++||..+.....
T Consensus 139 ~~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 139 KKESTVFFATHFRDIAAIL 157 (204)
T ss_pred hcCCEEEEECChHHHHHHh
Confidence 488999999998876543
No 438
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.33 E-value=3.1e-12 Score=171.99 Aligned_cols=117 Identities=20% Similarity=0.254 Sum_probs=96.0
Q ss_pred CCCCcHHHHHhcCCCC-ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHH------HHHHHHHHccCCCEE
Q 001091 670 IQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ------RIQLARAVYSNSDVY 742 (1159)
Q Consensus 670 i~~gTIreNIlfG~~~-d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQ------RIaLARAly~~a~I~ 742 (1159)
.|+||++|||.+ ++- +++ ..+.+..+....+..+|.| +|+++.+| +||||||| |++||||+..+|+++
T Consensus 1153 ~~~~~~~~~i~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il 1227 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGII 1227 (1311)
T ss_pred HcCccHHHHhhc-CCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEE
Confidence 589999999999 553 444 5666667777888999999 89999987 99999999 999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhhc------CCcEEEEEccCcccccc------cCEEEEE
Q 001091 743 IFDDPFSAVDAHTGTHLFKQCLMGLL------SQKTVLYTTHQLEFLDA------ADLVLVM 792 (1159)
Q Consensus 743 LLDDp~SALD~~t~~~if~~~i~g~l------~~kTvIlVTH~l~~l~~------aD~Iivl 792 (1159)
+|||||++||+.+...+.+ .+..+. .|.|+|+|||+++++.. +|+.+-+
T Consensus 1228 ~lDEPt~~lD~~~~~~l~~-~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~ 1288 (1311)
T TIGR00606 1228 ALDEPTTNLDRENIESLAH-ALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRL 1288 (1311)
T ss_pred EeeCCcccCCHHHHHHHHH-HHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeee
Confidence 9999999999999877644 444432 37899999999998753 4555544
No 439
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.31 E-value=4e-12 Score=137.86 Aligned_cols=152 Identities=14% Similarity=0.119 Sum_probs=96.0
Q ss_pred cccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCc-cCCCCcEEE-ECCEEEEEecCCCCCCCcHHHHHhcCCCCCh
Q 001091 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI-PRISGAAIK-VHGKKAYVPQSSWIQTGTIRENILFGKDMRQ 687 (1159)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~-~~~~G~i~~-v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~ 687 (1159)
..+.++ +++.++ ++++|+||+||||||+++++.+.. ....|..+. -..+++|+.|- ...-+++||+..|.
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i--~~~~~~~~~ls~g~---- 90 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRI--FTRIGASDDLAGGR---- 90 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeE--eccCCchhhhccCc----
Confidence 346666 777766 899999999999999999996532 112333211 12356666552 12234444443331
Q ss_pred HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHc--cCCCEEEEeCC---CCCCCHHHHHHHHHH
Q 001091 688 SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY--SNSDVYIFDDP---FSAVDAHTGTHLFKQ 762 (1159)
Q Consensus 688 ~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly--~~a~I~LLDDp---~SALD~~t~~~if~~ 762 (1159)
|-=...+..+++++- .+|+++||||| |+++|... +...
T Consensus 91 ----------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~---~~~~ 133 (216)
T cd03284 91 ----------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLS---IAWA 133 (216)
T ss_pred ----------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHH---HHHH
Confidence 111122334666554 69999999999 88888754 3233
Q ss_pred HHhhhc--CCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHH
Q 001091 763 CLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDL 806 (1159)
Q Consensus 763 ~i~g~l--~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL 806 (1159)
.+..+. .+.|+|++||..+....+|++.-+++|++...++.+++
T Consensus 134 il~~l~~~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 134 IVEYLHEKIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HHHHHHhccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 333222 37899999999877777888877788888766554444
No 440
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.31 E-value=6.5e-10 Score=138.26 Aligned_cols=219 Identities=18% Similarity=0.271 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHH
Q 001091 929 LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGL 1008 (1159)
Q Consensus 929 ~l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~ 1008 (1159)
+...++++.++..++.+...+...+.+.+....++.++++++++.|++|||.+++|.+++|+++|++.++..+......+
T Consensus 54 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~ 133 (567)
T COG1132 54 LLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLV 133 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHH
Confidence 44445555555666666666666777799999999999999999999999999999999999999999999998885555
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccchHHH
Q 001091 1009 AFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRF 1088 (1159)
Q Consensus 1009 ~~~~~~~l~~i~vi~~~~~~~~~~~iPl~~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~f 1088 (1159)
....+.+++.++++....|.+.++++...+++......+.+..+...+-...+.+.+.+++.|+++|..+||+|+.+++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~ 213 (567)
T COG1132 134 FTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRE 213 (567)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHH
Confidence 55678888888888888887766554444444444444444446666666677789999999999999999999999977
Q ss_pred HHHHHHHHhhhhhhHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 001091 1089 LLRSHSLIDDYSCVTFHNCGTMEWLC---LRINLLFNFAFFLVLIILVTLPRSAIDPSKFLQLF 1149 (1159)
Q Consensus 1089 ~~~~~~~lD~~~~~~~~~~~~~rWL~---~rldll~~~~~~~~~~~~v~~~~~~~~~g~v~~~~ 1149 (1159)
.+++.+..+...+...........+. ..+..++...+...+...+ ..+.+++|.+..++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~ 275 (567)
T COG1132 214 LKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLV--LSGSLTVGALAAFI 275 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCHhHHHHHH
Confidence 77776666655555433222222222 2223233322223323333 34557777654443
No 441
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.29 E-value=7e-10 Score=137.32 Aligned_cols=170 Identities=14% Similarity=0.200 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHHHHH
Q 001091 933 FIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFAL 1012 (1159)
Q Consensus 933 y~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~ 1012 (1159)
++++.++..++.+++.+.....+.+...+++.++++++++.|++||+.+++|+++||+++|++.+...+. .+..++...
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~ 132 (547)
T PRK10522 54 FLGLLLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGI 132 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHH
Confidence 3333444444556677777788999999999999999999999999999999999999999999987554 456667777
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccch---HHHH
Q 001091 1013 IQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQE---NRFL 1089 (1159)
Q Consensus 1013 ~~~l~~i~vi~~~~~~~~~~~iPl~~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e---~~f~ 1089 (1159)
+.+++.++++....|++.++++..+++.+.+..+..+..+...+-.....+...+++.|.++|+.+|+ ++.+ +++.
T Consensus 133 ~~~i~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~ 211 (547)
T PRK10522 133 ILTLGSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFE 211 (547)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHH
Confidence 77888888888888887766544333332222222222122211122345678899999999999995 5443 4566
Q ss_pred HHHHHHHhhhhhhHH
Q 001091 1090 LRSHSLIDDYSCVTF 1104 (1159)
Q Consensus 1090 ~~~~~~lD~~~~~~~ 1104 (1159)
+++.+..+...+..+
T Consensus 212 ~~~~~~~~~~~~~~~ 226 (547)
T PRK10522 212 NEYEPDAQEYRHHII 226 (547)
T ss_pred HHHhHHHHHHHhhhH
Confidence 777766666554433
No 442
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.29 E-value=1.1e-09 Score=136.61 Aligned_cols=213 Identities=17% Similarity=0.217 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHH
Q 001091 930 IGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLA 1009 (1159)
Q Consensus 930 l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~ 1009 (1159)
....++.++...++.++|.+.+...+-+....+=.+.+++++|-|++||.+.++|.+++|+ +|++.|-+.+...+...+
T Consensus 197 ~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l~~i 275 (709)
T COG2274 197 AIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTGSILTLI 275 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3445556677888999999999999999999999999999999999999999999999998 588888888888877777
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH---HHH-HHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccch
Q 001091 1010 FALIQLLSIIILMSQAAWQVFPLFL---VIL-GISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQE 1085 (1159)
Q Consensus 1010 ~~~~~~l~~i~vi~~~~~~~~~~~i---Pl~-~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e 1085 (1159)
..++.++..+++|.+.+|+++++.+ |+. ++.++.+.+-.+..|+..... +-..++..|++.|+.||++.+.|
T Consensus 276 iD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~----a~~~s~lvE~i~gi~tvK~~~~e 351 (709)
T COG2274 276 IDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEES----AEQQSFLVETIKGIETVKALAAE 351 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHhhhHHHHHhhhh
Confidence 7777777777888888888766543 333 233445556656666655444 44668999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHhcCCCCCCHHHHHHHH
Q 001091 1086 NRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFF---LVLIILVTLPRSAIDPSKFLQLF 1149 (1159)
Q Consensus 1086 ~~f~~~~~~~lD~~~~~~~~~~~~~rWL~~rldll~~~~~~---~~~~~~v~~~~~~~~~g~v~~~~ 1149 (1159)
.+|..+..+..+++.+..+-..-..-|...-..++..+... ......| ..|.++.|....+.
T Consensus 352 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lV--l~~~lTlG~LiAf~ 416 (709)
T COG2274 352 PRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILV--LEGELTLGQLVAFN 416 (709)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCcchHHHHHHH
Confidence 99999999999999999998888888887777776654322 2222334 35678887655443
No 443
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.25 E-value=5.3e-12 Score=133.84 Aligned_cols=123 Identities=17% Similarity=0.145 Sum_probs=83.3
Q ss_pred EEEEcCCCCChhHHHHHHh-CCccCCCCcEEEEC-CEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHH
Q 001091 626 VAVCGSVGSGKSSLLSSIL-GEIPRISGAAIKVH-GKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDI 703 (1159)
Q Consensus 626 vaIvG~~GSGKSTLL~~ll-Ge~~~~~G~i~~v~-g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl 703 (1159)
++|+||+||||||+++.+. ..+....|..+.-+ .+++|+.|- +
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~i-----------------------------------l 46 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRI-----------------------------------F 46 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceE-----------------------------------E
Confidence 6899999999999999998 55444555431111 122332221 1
Q ss_pred HhccCCCCccccCCCCCCCHHHHHHHHHHHHHcc--CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccC
Q 001091 704 EMWADGDLSVVGERGINLSGGQKQRIQLARAVYS--NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQ 779 (1159)
Q Consensus 704 ~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~--~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~ 779 (1159)
..++. .-.+.++-.++|+|++| +++++-. +|+++|+|||++++|+..+..+.+..++.+.+ +.++|++||.
T Consensus 47 ~~~~~--~d~~~~~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~ 121 (185)
T smart00534 47 TRIGA--SDSLAQGLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHY 121 (185)
T ss_pred EEeCC--CCchhccccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecH
Confidence 11111 11134455688888887 4555555 99999999999999999988888777766543 7899999999
Q ss_pred cccccccCE
Q 001091 780 LEFLDAADL 788 (1159)
Q Consensus 780 l~~l~~aD~ 788 (1159)
.+....+|+
T Consensus 122 ~~l~~~~~~ 130 (185)
T smart00534 122 HELTKLADE 130 (185)
T ss_pred HHHHHHhhc
Confidence 986666664
No 444
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.24 E-value=2.7e-11 Score=136.00 Aligned_cols=185 Identities=23% Similarity=0.353 Sum_probs=130.7
Q ss_pred cccccC-CeEeeCCc-----EEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecC-CCCCCCcHHHHHh---
Q 001091 611 TIKLTD-KMKIMKGS-----KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS-SWIQTGTIRENIL--- 680 (1159)
Q Consensus 611 ~~~L~~-nl~i~~G~-----~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~-pwi~~gTIreNIl--- 680 (1159)
+.+..+ .|.|+.|+ .+.-.|.+|-||||+++.+.|..+|.+|.- .-.-+++|=||. .-=+.+|+|+=..
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e-~p~lnVSykpqkispK~~~tvR~ll~~kI 427 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGE-IPVLNVSYKPQKISPKREGTVRQLLHTKI 427 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCc-ccccceeccccccCccccchHHHHHHHHh
Confidence 456666 78888886 678899999999999999999999998853 122368999996 2368899987552
Q ss_pred cCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH
Q 001091 681 FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760 (1159)
Q Consensus 681 fG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if 760 (1159)
-..-+++.-..+|.+-- -.+..++..-.+||||+.||++||-++=+.||+|+.|||-+=||++... +-
T Consensus 428 r~ay~~pqF~~dvmkpL-----------~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi-~A 495 (592)
T KOG0063|consen 428 RDAYMHPQFVNDVMKPL-----------QIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRI-IA 495 (592)
T ss_pred HhhhcCHHHHHhhhhhh-----------hHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHH-HH
Confidence 01112333333333322 2233456667899999999999999999999999999999999998643 22
Q ss_pred HHHHhh-hc-CCcEEEEEccCccccc-ccCEEEEEeC--CeEEEecChHHHHh
Q 001091 761 KQCLMG-LL-SQKTVLYTTHQLEFLD-AADLVLVMKD--GKIEQSGKYEDLIA 808 (1159)
Q Consensus 761 ~~~i~g-~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~--G~I~e~Gt~~eL~~ 808 (1159)
.+.++. .+ ..||--.|-|..-.-. .||+++|.+. +.....-+++.|++
T Consensus 496 skvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~ 548 (592)
T KOG0063|consen 496 SKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLA 548 (592)
T ss_pred HHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHH
Confidence 334433 23 5789999999876554 3999999863 33333444555554
No 445
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.23 E-value=1.5e-11 Score=137.08 Aligned_cols=142 Identities=19% Similarity=0.220 Sum_probs=88.7
Q ss_pred cEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE-EEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchH
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQD 702 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~-iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~d 702 (1159)
+-++|+||+|||||||+++|.|++++.+|++ .++|. +.-+ | ++. +.. .| ...
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i-~~~g~~v~~~---------------------d-~~~-ei~-~~--~~~ 164 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQL-GLRGKKVGIV---------------------D-ERS-EIA-GC--VNG 164 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceE-EECCEEeecc---------------------h-hHH-HHH-HH--hcc
Confidence 5789999999999999999999999999999 88874 3211 1 110 111 11 001
Q ss_pred HHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccc
Q 001091 703 IEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782 (1159)
Q Consensus 703 l~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~ 782 (1159)
+.+..-|..|.+-++-.. ++.-..++|| .+||++++|||.+. ..++..+..+.+|+|+|++||..+.
T Consensus 165 ~~q~~~~~r~~v~~~~~k----~~~~~~~i~~--~~P~villDE~~~~-------e~~~~l~~~~~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 165 VPQHDVGIRTDVLDGCPK----AEGMMMLIRS--MSPDVIVVDEIGRE-------EDVEALLEALHAGVSIIATAHGRDV 231 (270)
T ss_pred cccccccccccccccchH----HHHHHHHHHh--CCCCEEEEeCCCcH-------HHHHHHHHHHhCCCEEEEEechhHH
Confidence 111112222333221111 1113556666 59999999999742 2233334444479999999997655
Q ss_pred --c------------cccCEEEEEeCCeEEEecChHHHH
Q 001091 783 --L------------DAADLVLVMKDGKIEQSGKYEDLI 807 (1159)
Q Consensus 783 --l------------~~aD~Iivl~~G~I~e~Gt~~eL~ 807 (1159)
+ ..+|++++|++|+ ..|+.+++.
T Consensus 232 ~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 232 EDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred HHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 3 4489999999877 667665543
No 446
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.21 E-value=1.9e-09 Score=135.67 Aligned_cols=227 Identities=9% Similarity=-0.107 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHHhccchheeecccccccCCc-hh--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 895 VILLCQVLFQALQMGSNYWIAWATDEKRKVSR-EQ--LIGVFIF----LSGGSSFFILGRAVLLATIAIKTAQRLFLNMI 967 (1159)
Q Consensus 895 ~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~-~~--~l~vy~~----l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll 967 (1159)
+.+++.++...+.+...++...-.+.-...+. .+ ++..+++ ++++..+..++...+......+..+++|++.+
T Consensus 100 ~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~ 179 (659)
T TIGR00954 100 LIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYSKYL 179 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555666656665533321111111 11 1333333 33333344444444555666777888888888
Q ss_pred HHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHH
Q 001091 968 TSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQ-AAWQVFPLFLVILGISIWYQAY 1046 (1159)
Q Consensus 968 ~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~i~vi~~-~~~~~~~~~iPl~~~~~~~q~~ 1046 (1159)
+....-+++|||. ++|.+++|+++|++.+.+.+...+..++..++.+++.++++.. ..|...++++.+.++..++-++
T Consensus 180 ~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~ 258 (659)
T TIGR00954 180 SGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTK 258 (659)
T ss_pred CCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 8888888899997 8899999999999999999999999999999998887776665 6776655554444444455555
Q ss_pred HHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccchHHHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHH
Q 001091 1047 YITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFN 1122 (1159)
Q Consensus 1047 Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~f~~~~~~~lD~~~~~~~~~~~~~rWL~~rldll~~ 1122 (1159)
+.+..+++.+-.....+-..+++.|+++|..+|++|+.|+...+++.+..++..+........+.|+..-.+++..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 334 (659)
T TIGR00954 259 LRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAK 334 (659)
T ss_pred HccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5555555555555566778899999999999999999999999998888888888887777777777777776653
No 447
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.19 E-value=2e-11 Score=151.65 Aligned_cols=92 Identities=26% Similarity=0.357 Sum_probs=79.5
Q ss_pred hccCCCCccccCCC------CCCCHHHHHHHHHHHHHc----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHhhh
Q 001091 705 MWADGDLSVVGERG------INLSGGQKQRIQLARAVY----------SNSDVYIFDDPF-SAVDAHTGTHLFKQCLMGL 767 (1159)
Q Consensus 705 ~lp~Gd~T~IGe~G------~~LSGGQKQRIaLARAly----------~~a~I~LLDDp~-SALD~~t~~~if~~~i~g~ 767 (1159)
.+|++.++.+++.| .+||||||||++||||+. .+|++++||||| ++||+.....+.+ .+..+
T Consensus 447 ~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~-~l~~~ 525 (562)
T PHA02562 447 TLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLS-ILDSL 525 (562)
T ss_pred EechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHH-HHHhC
Confidence 46888888998888 689999999999999987 599999999998 7899999777654 66666
Q ss_pred cCCcEEEEEccCcccccccCEEEEEeC-CeEE
Q 001091 768 LSQKTVLYTTHQLEFLDAADLVLVMKD-GKIE 798 (1159)
Q Consensus 768 l~~kTvIlVTH~l~~l~~aD~Iivl~~-G~I~ 798 (1159)
+++|+|+|||+.+....+|++++|++ |+..
T Consensus 526 -~~~~iiiish~~~~~~~~d~~~~l~~~~~~~ 556 (562)
T PHA02562 526 -KDTNVFVISHKDHDPQKFDRHLKMEKVGRFS 556 (562)
T ss_pred -CCCeEEEEECchhchhhhhcEEEEEEECCee
Confidence 78999999999988888999999975 5543
No 448
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.19 E-value=1.9e-11 Score=116.19 Aligned_cols=63 Identities=21% Similarity=0.244 Sum_probs=54.8
Q ss_pred cccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-------------EEEEEecCCCCCCCcHH
Q 001091 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIR 676 (1159)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------------~iayv~Q~pwi~~gTIr 676 (1159)
.+.|++ ++++++|+.++|+||||||||||++++. +|++ .++| .++|+||+ +|.+|||
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i-~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~ 72 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKH-RLVGDDNVEIREDSKDELIGRNPEL--GLEIRLR 72 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeE-EEeeEeHHHhhhhhcCCEEEEechh--cchhhHH
Confidence 357889 9999999999999999999999999986 6777 6655 26788888 9999999
Q ss_pred HHHhcC
Q 001091 677 ENILFG 682 (1159)
Q Consensus 677 eNIlfG 682 (1159)
|||.+-
T Consensus 73 ~Ni~~~ 78 (107)
T cd00820 73 LNIFLI 78 (107)
T ss_pred hhceee
Confidence 999983
No 449
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.19 E-value=8.8e-11 Score=127.18 Aligned_cols=129 Identities=17% Similarity=0.172 Sum_probs=91.4
Q ss_pred CeEeeCC--cEEEEEcCCCCChhHHHHHHh--CCccCCCCcEEEE-CCEEEEEecCCCCCC--CcHHHHHhcCCCCChHH
Q 001091 617 KMKIMKG--SKVAVCGSVGSGKSSLLSSIL--GEIPRISGAAIKV-HGKKAYVPQSSWIQT--GTIRENILFGKDMRQSF 689 (1159)
Q Consensus 617 nl~i~~G--~~vaIvG~~GSGKSTLL~~ll--Ge~~~~~G~i~~v-~g~iayv~Q~pwi~~--gTIreNIlfG~~~d~~~ 689 (1159)
++.+.++ .+++|+||+|+||||||+.+. +.+ ...|..+.. ..+++|..|.---++ .|+.++.
T Consensus 21 d~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~---------- 89 (213)
T cd03281 21 DTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQ---------- 89 (213)
T ss_pred eEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCCcEEeeeeeeeeeeCCccChhhcc----------
Confidence 4555555 789999999999999999998 444 456665211 346788887632111 1222111
Q ss_pred HHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC
Q 001091 690 YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS 769 (1159)
Q Consensus 690 y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~ 769 (1159)
-|. --+-||+++|++...+++++|||||++++|+..+..++...++.+.+
T Consensus 90 ---------------------S~f---------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~ 139 (213)
T cd03281 90 ---------------------SAF---------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLK 139 (213)
T ss_pred ---------------------chH---------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh
Confidence 000 34569999999999999999999999999998877787777766653
Q ss_pred ----CcEEEEEccCccccccc
Q 001091 770 ----QKTVLYTTHQLEFLDAA 786 (1159)
Q Consensus 770 ----~kTvIlVTH~l~~l~~a 786 (1159)
+.++|++||..+.....
T Consensus 140 ~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 140 RGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred cCCCCcEEEEEcChHHHHHhh
Confidence 24899999998876543
No 450
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.14 E-value=1.5e-10 Score=146.22 Aligned_cols=150 Identities=22% Similarity=0.237 Sum_probs=100.3
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccCCeEeeCC-cEEEEEcCCCCChhHHHHHHhCC-ccCCCCcEEEECCEEEEEecC
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKG-SKVAVCGSVGSGKSSLLSSILGE-IPRISGAAIKVHGKKAYVPQS 667 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~nl~i~~G-~~vaIvG~~GSGKSTLL~~llGe-~~~~~G~i~~v~g~iayv~Q~ 667 (1159)
.+.++++....-.. .. .-.+++.+.+| +.++|+||+|+||||||+.|.|. +.+..|. |||..
T Consensus 295 ~i~l~~~rhPll~~------~~-~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~---------~Vpa~ 358 (771)
T TIGR01069 295 KIILENARHPLLKE------PK-VVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI---------PIPAN 358 (771)
T ss_pred CEEEccccCceecC------Cc-eEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC---------CccCC
Confidence 57777765532111 11 12237788777 89999999999999999999998 4455552 23332
Q ss_pred CCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q 001091 668 SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1159)
Q Consensus 668 pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp 747 (1159)
+... -.+-++|.- .. |+.-.+.++-.++|+|++++..+++++ .+++++|||||
T Consensus 359 ~~~~-~~~~d~i~~--~i-----------------------~~~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~ 411 (771)
T TIGR01069 359 EHSE-IPYFEEIFA--DI-----------------------GDEQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDEL 411 (771)
T ss_pred cccc-ccchhheee--ec-----------------------ChHhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCC
Confidence 2100 011222210 00 111112344568999999999999987 78999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccc
Q 001091 748 FSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEF 782 (1159)
Q Consensus 748 ~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~ 782 (1159)
++++|+..+..+....+..+. +|.++|++||..+.
T Consensus 412 g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL 447 (771)
T TIGR01069 412 GAGTDPDEGSALAISILEYLLKQNAQVLITTHYKEL 447 (771)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 999999999888666555443 57899999999764
No 451
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.13 E-value=1.5e-08 Score=125.45 Aligned_cols=217 Identities=10% Similarity=-0.066 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHH-HHHH
Q 001091 929 LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPY-RLAG 1007 (1159)
Q Consensus 929 ~l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~-~l~~ 1007 (1159)
++.+++++.++..++..++.+.....+.+....+++++++++++.|++. .|..++|+.+|++.+.+.+.. .+..
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~ 122 (544)
T TIGR01842 48 LTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFA 122 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC-----ccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 3444555555566777777888888899999999999999999999853 356789999999999987665 3444
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccchHH
Q 001091 1008 LAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENR 1087 (1159)
Q Consensus 1008 ~~~~~~~~l~~i~vi~~~~~~~~~~~iPl~~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~ 1087 (1159)
++...+.++. ++++....|++.++++..+++.+.+..+..+..|...+-.....+...+++.|+++|+.|||+|+.|++
T Consensus 123 ~~~~~~~~~~-~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~ 201 (544)
T TIGR01842 123 FFDAPWMPIY-LLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGN 201 (544)
T ss_pred HHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHH
Confidence 4444444443 345666677665443221111222222222222222222234456678999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 001091 1088 FLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFA-FFLVLIILVTLPRSAIDPSKFLQLFIS 1151 (1159)
Q Consensus 1088 f~~~~~~~lD~~~~~~~~~~~~~rWL~~rldll~~~~-~~~~~~~~v~~~~~~~~~g~v~~~~~~ 1151 (1159)
+.+++.+..++..+..+.......+...-..++..+. +++..+.......|.+++|.+..+++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~ 266 (544)
T TIGR01842 202 LTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSIL 266 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999988888776665543333333222223332211 111111222233678999877655443
No 452
>PRK13695 putative NTPase; Provisional
Probab=99.07 E-value=1.8e-10 Score=120.90 Aligned_cols=153 Identities=18% Similarity=0.203 Sum_probs=97.5
Q ss_pred EEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHH
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIE 704 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~ 704 (1159)
+++|+|++|||||||++.+.+++.+ .| + .+ .+|+.|+... ++ + ..|-... .. .. +-..-+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G-~-~~---~g~~~~~~~~-~~----~-~~~~~~~--~~----~~-~~~~~l~ 62 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EG-Y-KV---GGFYTEEVRE-GG----K-RIGFKII--DL----DT-GEEGILA 62 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CC-C-eE---EEEEcHHHHh-cC----C-ccceEEE--Ec----CC-CCeEEcc
Confidence 6899999999999999999998765 56 3 32 4677664211 00 0 1111000 00 00 0000011
Q ss_pred hccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC--CCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccc
Q 001091 705 MWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDD--PFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782 (1159)
Q Consensus 705 ~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDD--p~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~ 782 (1159)
....-+...++.....+||+++-++.+++...++|+++++|| |+..+|.+.. ..+.+++ ..++++|+|+|.-..
T Consensus 63 ~~~~~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~-~~l~~~~---~~~~~~i~v~h~~~~ 138 (174)
T PRK13695 63 RVGFPSRPRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFV-KAVEEVL---DSEKPVIATLHRRSV 138 (174)
T ss_pred ccCCCCCCceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHH-HHHHHHH---hCCCeEEEEECchhh
Confidence 110002223445556799999999999999999999999999 4445554432 2333333 358999999998555
Q ss_pred ccccCEEEEEeCCeEEEe
Q 001091 783 LDAADLVLVMKDGKIEQS 800 (1159)
Q Consensus 783 l~~aD~Iivl~~G~I~e~ 800 (1159)
-+.+|+|..+.+|+|.+.
T Consensus 139 ~~~~~~i~~~~~~~i~~~ 156 (174)
T PRK13695 139 HPFVQEIKSRPGGRVYEL 156 (174)
T ss_pred HHHHHHHhccCCcEEEEE
Confidence 567999999999999886
No 453
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.01 E-value=2.3e-09 Score=136.01 Aligned_cols=133 Identities=17% Similarity=0.193 Sum_probs=91.6
Q ss_pred CeEeeC-CcEEEEEcCCCCChhHHHHHHhCC-ccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHH
Q 001091 617 KMKIMK-GSKVAVCGSVGSGKSSLLSSILGE-IPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVL 694 (1159)
Q Consensus 617 nl~i~~-G~~vaIvG~~GSGKSTLL~~llGe-~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl 694 (1159)
++.+.. +..++|+||+++||||+|+.+... +-...|. |||-+.- ..-++-|+|..
T Consensus 320 di~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~---------~vpa~~~-~~i~~~~~i~~------------- 376 (782)
T PRK00409 320 DISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGL---------PIPANEP-SEIPVFKEIFA------------- 376 (782)
T ss_pred eeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCC---------CcccCCC-ccccccceEEE-------------
Confidence 455544 467899999999999999988532 1112221 2222200 01122233321
Q ss_pred HHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEE
Q 001091 695 EGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTV 773 (1159)
Q Consensus 695 ~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTv 773 (1159)
.-||.--+..+-.++|+|++|++.++|++ .+|+++|||||++++|+..+..+....+..+. ++.++
T Consensus 377 ------------~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~v 443 (782)
T PRK00409 377 ------------DIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKI 443 (782)
T ss_pred ------------ecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 12344444456678999999999999999 89999999999999999999888776665443 47899
Q ss_pred EEEccCcccccc
Q 001091 774 LYTTHQLEFLDA 785 (1159)
Q Consensus 774 IlVTH~l~~l~~ 785 (1159)
|++||..+....
T Consensus 444 IitTH~~el~~~ 455 (782)
T PRK00409 444 IATTHYKELKAL 455 (782)
T ss_pred EEECChHHHHHH
Confidence 999999887654
No 454
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.99 E-value=7.4e-10 Score=136.98 Aligned_cols=77 Identities=26% Similarity=0.267 Sum_probs=68.5
Q ss_pred CCCCHHHHHHHHHHHHHccC----CCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeC
Q 001091 719 INLSGGQKQRIQLARAVYSN----SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKD 794 (1159)
Q Consensus 719 ~~LSGGQKQRIaLARAly~~----a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~ 794 (1159)
..||||||||++||||+... |+++|||||+++||+.+...+. +.+..+.+++|||+|||+++....||++++|++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~-~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIA-KKLAQLSERHQVLCVTHLPQVAAHADAHFKVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEE
Confidence 47899999999999999875 6999999999999999987665 456666679999999999999999999999987
Q ss_pred Ce
Q 001091 795 GK 796 (1159)
Q Consensus 795 G~ 796 (1159)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 64
No 455
>PRK10869 recombination and repair protein; Provisional
Probab=98.98 E-value=9.1e-10 Score=135.04 Aligned_cols=76 Identities=24% Similarity=0.258 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCC
Q 001091 720 NLSGGQKQRIQLARAVYS----NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDG 795 (1159)
Q Consensus 720 ~LSGGQKQRIaLARAly~----~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G 795 (1159)
.|||||+|||+|||++.. +|+++|||||+++||..++..+.+ .+..+.+++|+|+|||+++....||++++++++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~-~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~ 508 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGK-LLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKE 508 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 699999999999999996 589999999999999999887655 566666789999999999999999999999875
Q ss_pred e
Q 001091 796 K 796 (1159)
Q Consensus 796 ~ 796 (1159)
.
T Consensus 509 ~ 509 (553)
T PRK10869 509 T 509 (553)
T ss_pred c
Confidence 3
No 456
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.96 E-value=4.9e-10 Score=126.07 Aligned_cols=159 Identities=26% Similarity=0.382 Sum_probs=117.6
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEE----------EECC-------------------EEEEEecCCCCC
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI----------KVHG-------------------KKAYVPQSSWIQ 671 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~----------~v~g-------------------~iayv~Q~pwi~ 671 (1159)
++|+..+.||.+|-||||-++.++|.++|.-|.-. ...| +.-||.|-|---
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 48999999999999999999999999999888531 0011 124667777777
Q ss_pred CCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 001091 672 TGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAV 751 (1159)
Q Consensus 672 ~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SAL 751 (1159)
.|++++++- +..|.+.-.++++.-+|+.-++ ..-..||||+-||.++|-|..+++|+|++|||-|-|
T Consensus 178 k~~v~~~l~--~~~~r~~~~~~~~~~~L~~~~~-----------re~~~lsggelqrfaia~~~vq~advyMFDEpSsYL 244 (592)
T KOG0063|consen 178 KGTVGSLLD--RKDERDNKEEVCDQLDLNNLLD-----------REVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYL 244 (592)
T ss_pred HHHHHHHHH--HHhhcccHHHHHHHHHHhhHHH-----------hhhhhcccchhhhhhhhhhhhhhcceeEecCCcccc
Confidence 777777763 3334445566666555443221 112479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEe
Q 001091 752 DAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMK 793 (1159)
Q Consensus 752 D~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~ 793 (1159)
|....-+- ...|+.++ .++=||+|-|.++.+.. .|-|-.+-
T Consensus 245 DVKQRLka-A~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 245 DVKQRLKA-AITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred hHHHhhhH-HHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 99875432 23455555 48999999999998876 67776663
No 457
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.95 E-value=1.6e-09 Score=117.62 Aligned_cols=135 Identities=16% Similarity=0.134 Sum_probs=87.8
Q ss_pred cccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhC-CccCCCCcEEEECC--EEEEEecCCCCCCCcHHHHHhcCCCCC
Q 001091 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHG--KKAYVPQSSWIQTGTIRENILFGKDMR 686 (1159)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llG-e~~~~~G~i~~v~g--~iayv~Q~pwi~~gTIreNIlfG~~~d 686 (1159)
.++.+| ++.+++|++++|+||+|+||||+++.+.+ ++.+..|.. .... +++|.+|-- -.-..+|++.-|...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~-v~a~~~~~~~~~~i~--~~~~~~d~~~~~~St- 93 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSF-VPASSATLSIFDSVL--TRMGASDSIQHGMST- 93 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCE-EEcCceEEeccceEE--EEecCccccccccch-
Confidence 567788 99999999999999999999999999999 888888875 2221 344443321 011112222211110
Q ss_pred hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q 001091 687 QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG 766 (1159)
Q Consensus 687 ~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g 766 (1159)
+ ..+-+|++-.=.-..+++++|||||.++.|+..+..+....++.
T Consensus 94 ---F--------------------------------~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~ 138 (222)
T cd03287 94 ---F--------------------------------MVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHY 138 (222)
T ss_pred ---H--------------------------------HHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHH
Confidence 0 11122222111123578999999999988888777766666655
Q ss_pred hcC--CcEEEEEccCccccc
Q 001091 767 LLS--QKTVLYTTHQLEFLD 784 (1159)
Q Consensus 767 ~l~--~kTvIlVTH~l~~l~ 784 (1159)
+.+ +.|+|++||..+...
T Consensus 139 l~~~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 139 LLEEKKCLVLFVTHYPSLGE 158 (222)
T ss_pred HHhccCCeEEEEcccHHHHH
Confidence 553 689999999987644
No 458
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.89 E-value=1.9e-09 Score=117.01 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCC-----CCCCHHHHHHHHHH
Q 001091 724 GQKQRIQLARAVYSNSDVYIFDDPF-----SAVDAHTGTHLFKQ 762 (1159)
Q Consensus 724 GQKQRIaLARAly~~a~I~LLDDp~-----SALD~~t~~~if~~ 762 (1159)
-|++++.|||+++.+|+++++|||| ++||+.+.+++.+.
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~ 199 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKE 199 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHH
Confidence 3999999999999999999999999 99999998877653
No 459
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.83 E-value=2.8e-08 Score=105.11 Aligned_cols=141 Identities=18% Similarity=0.166 Sum_probs=88.5
Q ss_pred EEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHh
Q 001091 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEM 705 (1159)
Q Consensus 626 vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~ 705 (1159)
+.|.||+|+|||+|...++-+.-.... ++.|++=+ .| .+.+.+-.+..+. |++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~-------~v~~~s~e-----~~------------~~~~~~~~~~~g~--~~~~ 55 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGE-------PGLYVTLE-----ES------------PEELIENAESLGW--DLER 55 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCC-------cEEEEECC-----CC------------HHHHHHHHHHcCC--ChHH
Confidence 679999999999999877665443222 24555421 11 1111111222222 2333
Q ss_pred c-cCCCCccccCCCCCCCHHHHH-----HHHHHHH-HccCCCEEEEeCCCCCCC---HHHHHHHHHHHHhhhc-CCcEEE
Q 001091 706 W-ADGDLSVVGERGINLSGGQKQ-----RIQLARA-VYSNSDVYIFDDPFSAVD---AHTGTHLFKQCLMGLL-SQKTVL 774 (1159)
Q Consensus 706 l-p~Gd~T~IGe~G~~LSGGQKQ-----RIaLARA-ly~~a~I~LLDDp~SALD---~~t~~~if~~~i~g~l-~~kTvI 774 (1159)
+ ..|....+......+|+||+| +..+.++ .-.+|+++++|+|++.+| ....+.+ .+.+..+. .|.|+|
T Consensus 56 l~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i-~~l~~~l~~~g~tvi 134 (187)
T cd01124 56 LEDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEI-RRLLFALKRFGVTTL 134 (187)
T ss_pred HHhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHH-HHHHHHHHHCCCEEE
Confidence 2 235555566667788999998 3444444 556899999999999999 5444433 33444332 478999
Q ss_pred EEccCccc---------c-cccCEEEEEe
Q 001091 775 YTTHQLEF---------L-DAADLVLVMK 793 (1159)
Q Consensus 775 lVTH~l~~---------l-~~aD~Iivl~ 793 (1159)
+++|.... + ..||.|+.|+
T Consensus 135 ~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 135 LTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred EEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 99998764 3 3489999886
No 460
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.76 E-value=3.6e-08 Score=119.48 Aligned_cols=138 Identities=25% Similarity=0.348 Sum_probs=101.5
Q ss_pred CCCcHHHHHhcCCCCC--h---HHHHHHHHHhc-cchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCC--CEE
Q 001091 671 QTGTIRENILFGKDMR--Q---SFYEEVLEGCA-LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS--DVY 742 (1159)
Q Consensus 671 ~~gTIreNIlfG~~~d--~---~~y~~vl~ac~-L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a--~I~ 742 (1159)
...+|+|-.-|-+.+. + +--+++++.-. -..++...--||.|. ...-.+||||+.|||-||+.+.++= =+|
T Consensus 427 ~~msi~~~~~f~~~l~l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL-~R~a~TLSGGEaQRIRLAtqiGS~LtGVlY 505 (935)
T COG0178 427 SEMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLTL-SRSAGTLSGGEAQRIRLATQIGSGLTGVLY 505 (935)
T ss_pred hhccHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcccc-cccCCCcChhHHHHHHHHHHhcccceeeEE
Confidence 4567888887766554 1 11222222210 012344444566664 3445699999999999999999974 489
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEEEEEe------CCeEEEecChHHHHhhc
Q 001091 743 IFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMK------DGKIEQSGKYEDLIADQ 810 (1159)
Q Consensus 743 LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~Iivl~------~G~I~e~Gt~~eL~~~~ 810 (1159)
+||||.-+|-+.--.++.+ .++.+. .|.|+|+|-|+.+++..||+|+=|- .|+|+.+|+++|+++++
T Consensus 506 VLDEPSIGLHqrDn~rLi~-tL~~LRDlGNTviVVEHDedti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 506 VLDEPSIGLHQRDNERLIE-TLKRLRDLGNTVIVVEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANP 579 (935)
T ss_pred EecCCccCCChhhHHHHHH-HHHHHHhcCCeEEEEecCHHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCC
Confidence 9999999999887777755 344444 4899999999999999999999983 78999999999999843
No 461
>PRK01156 chromosome segregation protein; Provisional
Probab=98.75 E-value=1.4e-08 Score=133.09 Aligned_cols=76 Identities=26% Similarity=0.385 Sum_probs=64.3
Q ss_pred CCCCCCHHHHHHHHH------HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC---C-cEEEEEccCccccccc
Q 001091 717 RGINLSGGQKQRIQL------ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS---Q-KTVLYTTHQLEFLDAA 786 (1159)
Q Consensus 717 ~G~~LSGGQKQRIaL------ARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~---~-kTvIlVTH~l~~l~~a 786 (1159)
.+..||||||+|++| ||+++++|++++|||||++||+.....+.+ .+...++ + .|+|+|||+.++...|
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~-~l~~~~~~~~~~~~ii~ish~~~~~~~~ 876 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKD-IIEYSLKDSSDIPQVIMISHHRELLSVA 876 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHH-HHHHHHHhcCCCCeEEEEECchHHHHhc
Confidence 466899999999975 599999999999999999999999877654 4443322 2 5899999999999999
Q ss_pred CEEEEEe
Q 001091 787 DLVLVMK 793 (1159)
Q Consensus 787 D~Iivl~ 793 (1159)
|+|+.++
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 9999997
No 462
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.74 E-value=7.6e-08 Score=114.20 Aligned_cols=166 Identities=16% Similarity=0.163 Sum_probs=103.8
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCC---------CCCCcHHHHHhcCCCCCh
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW---------IQTGTIRENILFGKDMRQ 687 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pw---------i~~gTIreNIlfG~~~d~ 687 (1159)
-+.+++|++++|+|++|+|||||++.|.|.+++..|.+ .. +.|..- +-...++..|.+-.+.|+
T Consensus 152 l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI-~~------~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 152 LLTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVI-AL------IGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred eeeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEE-EE------EecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 58899999999999999999999999999999988866 33 222210 111223334444333332
Q ss_pred ---HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCE-EEEeC--CCCCCCHHHHHHHHH
Q 001091 688 ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDV-YIFDD--PFSAVDAHTGTHLFK 761 (1159)
Q Consensus 688 ---~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I-~LLDD--p~SALD~~t~~~if~ 761 (1159)
+|+....-+|...+-+.. .|.+-.+==. +|+ |- |||. + +| +.+.| .++++|+.....+-
T Consensus 225 ~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~D--slt-----r~--A~A~-r--Eisl~~ge~P~~~G~dp~~~~~l~- 289 (438)
T PRK07721 225 PALMRIKGAYTATAIAEYFRD--QGLNVMLMMD--SVT-----RV--AMAQ-R--EIGLAVGEPPTTKGYTPSVFAILP- 289 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHH--CCCcEEEEEe--ChH-----HH--HHHH-H--HHHHhcCCCCccccCCHHHHHHHH-
Confidence 566666666666665542 2333222111 010 11 1111 0 00 01234 37899999876543
Q ss_pred HHHhhhc---CCc-----EEEEEccCcccccccCEEEEEeCCeEEEecChHH
Q 001091 762 QCLMGLL---SQK-----TVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1159)
Q Consensus 762 ~~i~g~l---~~k-----TvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~e 805 (1159)
+.+..+- +|+ ||++.+|+++. +.||++.+|.||+|+..|+..+
T Consensus 290 ~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 290 KLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred HHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 4454433 465 99999999985 8899999999999999887543
No 463
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.69 E-value=1.6e-07 Score=103.11 Aligned_cols=144 Identities=24% Similarity=0.300 Sum_probs=81.7
Q ss_pred EeeCCcEEEEEcCCCCChhHH-HHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHH-hcCCCCChHHHHHHHHH
Q 001091 619 KIMKGSKVAVCGSVGSGKSSL-LSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI-LFGKDMRQSFYEEVLEG 696 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTL-L~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNI-lfG~~~d~~~y~~vl~a 696 (1159)
-+++|+.+.|.|++||||||| ++.+.+..++ |. ++.|++.+- -...+.++. .+|-+
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g~------~~~yi~~e~--~~~~~~~~~~~~g~~------------ 77 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQN--GY------SVSYVSTQL--TTTEFIKQMMSLGYD------------ 77 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC--CC------cEEEEeCCC--CHHHHHHHHHHhCCc------------
Confidence 378999999999999999999 5777776553 32 246665321 111122222 12221
Q ss_pred hccchHHHhcc-CCCCccccCCCCCCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCC----CHHHHHHHHHHHHhhh
Q 001091 697 CALNQDIEMWA-DGDLSVVGERGINLSGGQKQRIQLARAVYS----NSDVYIFDDPFSAV----DAHTGTHLFKQCLMGL 767 (1159)
Q Consensus 697 c~L~~dl~~lp-~Gd~T~IGe~G~~LSGGQKQRIaLARAly~----~a~I~LLDDp~SAL----D~~t~~~if~~~i~g~ 767 (1159)
++.+- .|..-.+ +-...+|+++.++-.++|.+-. +|+++++|||++.+ |+...+.+. +.++.+
T Consensus 78 ------~~~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~-~~l~~l 149 (230)
T PRK08533 78 ------INKKLISGKLLYI-PVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLM-AFFKRI 149 (230)
T ss_pred ------hHHHhhcCcEEEE-EecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHH-HHHHHH
Confidence 11111 0111011 1112467777666666665544 69999999999999 666555554 455555
Q ss_pred cC-CcEEEEEccCccccc--------c-cCEEEEEe
Q 001091 768 LS-QKTVLYTTHQLEFLD--------A-ADLVLVMK 793 (1159)
Q Consensus 768 l~-~kTvIlVTH~l~~l~--------~-aD~Iivl~ 793 (1159)
.+ |+|+++ ||+..... . ||-|+.|+
T Consensus 150 ~~~g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 150 SSLNKVIIL-TANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HhCCCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence 33 666655 55544321 1 56677665
No 464
>PRK03918 chromosome segregation protein; Provisional
Probab=98.69 E-value=2.6e-08 Score=130.47 Aligned_cols=75 Identities=28% Similarity=0.390 Sum_probs=63.9
Q ss_pred CCCCCHHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEEE
Q 001091 718 GINLSGGQKQ------RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVL 790 (1159)
Q Consensus 718 G~~LSGGQKQ------RIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~Ii 790 (1159)
...||||||| |++|||++..+|++++|||||+++|+....++.+ .+..+. .+.|+|+|||+.++...||+++
T Consensus 786 ~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~-~l~~~~~~~~~iiiith~~~~~~~~d~~~ 864 (880)
T PRK03918 786 LTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVD-IMERYLRKIPQVIIVSHDEELKDAADYVI 864 (880)
T ss_pred hhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHhCCeEE
Confidence 3579999999 5666678999999999999999999999887765 455544 3679999999999888899999
Q ss_pred EEe
Q 001091 791 VMK 793 (1159)
Q Consensus 791 vl~ 793 (1159)
+|+
T Consensus 865 ~l~ 867 (880)
T PRK03918 865 RVS 867 (880)
T ss_pred EEE
Confidence 997
No 465
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.69 E-value=2.5e-08 Score=106.93 Aligned_cols=119 Identities=21% Similarity=0.257 Sum_probs=79.7
Q ss_pred EEEEEcCCCCChhHHHHHHhCCccCC-CCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHH
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIPRI-SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDI 703 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~~~-~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl 703 (1159)
+++|+||+||||||+++++++++++. .|.++.+...+-|..+.. .|-.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~---------------------------~~~i---- 51 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESK---------------------------RSLI---- 51 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCc---------------------------ccee----
Confidence 78999999999999999999999854 455533333332221110 0000
Q ss_pred HhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccc
Q 001091 704 EMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL 783 (1159)
Q Consensus 704 ~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l 783 (1159)
.+.++|++..+++. ++++|+-.+||++++|||. |.++.... ++....|++++.++|..+..
T Consensus 52 ------~q~~vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~----l~~a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 52 ------NQREVGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLA----LTAAETGHLVMSTLHTNSAA 112 (198)
T ss_pred ------eecccCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHH----HHHHHcCCEEEEEecCCcHH
Confidence 01223333333322 5889999999999999996 66654433 33345689999999999888
Q ss_pred cccCEEEEEe
Q 001091 784 DAADLVLVMK 793 (1159)
Q Consensus 784 ~~aD~Iivl~ 793 (1159)
...|+++.|-
T Consensus 113 ~~~~Rl~~l~ 122 (198)
T cd01131 113 KTIDRIIDVF 122 (198)
T ss_pred HHHhHHHhhc
Confidence 8889987763
No 466
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.67 E-value=3.4e-08 Score=113.17 Aligned_cols=143 Identities=17% Similarity=0.208 Sum_probs=94.1
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHH
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEG 696 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~a 696 (1159)
++.+++|+.++|+|++|||||||+++|++++++..|.+ .+....-+-... .| .
T Consensus 138 ~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv-~ied~~El~~~~---------~~-----------------~ 190 (308)
T TIGR02788 138 RLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERII-TIEDTREIFLPH---------PN-----------------Y 190 (308)
T ss_pred HHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEE-EEcCccccCCCC---------CC-----------------E
Confidence 35678999999999999999999999999999887755 432110000000 00 0
Q ss_pred hccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCc-EEEE
Q 001091 697 CALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-TVLY 775 (1159)
Q Consensus 697 c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~k-TvIl 775 (1159)
+.+... +. +.| .++-...=.+++++..+||++++|||.+ .+. + +.++....|. +++.
T Consensus 191 ~~l~~~----~~-------~~~---~~~~~~~~~l~~~Lr~~pd~ii~gE~r~---~e~----~-~~l~a~~~g~~~~i~ 248 (308)
T TIGR02788 191 VHLFYS----KG-------GQG---LAKVTPKDLLQSCLRMRPDRIILGELRG---DEA----F-DFIRAVNTGHPGSIT 248 (308)
T ss_pred EEEEec----CC-------CCC---cCccCHHHHHHHHhcCCCCeEEEeccCC---HHH----H-HHHHHHhcCCCeEEE
Confidence 011000 00 001 1112223367788999999999999996 222 2 2344444554 6699
Q ss_pred EccCcccccccCEEEEEeCCeEEEecChHHHHh
Q 001091 776 TTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 776 VTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
++|..+.....|++..|..|++...|...+.+.
T Consensus 249 T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~~ 281 (308)
T TIGR02788 249 TLHAGSPEEAFEQLALMVKSSQAGLGLDFAYIV 281 (308)
T ss_pred EEeCCCHHHHHHHHHHHhhccccccCCCHHHHH
Confidence 999999777799999999999998888777664
No 467
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.3e-05 Score=95.79 Aligned_cols=199 Identities=14% Similarity=0.147 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHH
Q 001091 929 LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGL 1008 (1159)
Q Consensus 929 ~l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~ 1008 (1159)
+++..++..++-.+....+.-....++.++-..|++++++++.+.+..|-...|+|.+....+.-++.++.-....+-..
T Consensus 42 ~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~ 121 (559)
T COG4988 42 LLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQM 121 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555566666666777888888899999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHH---HHHHHHHHHHHHHHHH--HhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhcc
Q 001091 1009 AFALIQLLSIIILMSQAAWQVFP---LFLVILGISIWYQAYY--ITTARELARMVGTRKAPILHHFSESIAGATTIRCFN 1083 (1159)
Q Consensus 1009 ~~~~~~~l~~i~vi~~~~~~~~~---~~iPl~~~~~~~q~~Y--l~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~ 1083 (1159)
+.+.+.-+..++.+....|...+ +..|++.+++++...- -++.++.+-+ .-+-+||-+.+.|+.|+|+|+
T Consensus 122 ~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~-----~~ls~~FLD~LrGL~TLr~f~ 196 (559)
T COG4988 122 FLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSAL-----ARLSGHFLDRLRGLETLRAFG 196 (559)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHhcChHHHHHhc
Confidence 88887777777777777777554 3567777665543221 1223333322 336689999999999999999
Q ss_pred chHHHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001091 1084 QENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIIL 1132 (1159)
Q Consensus 1084 ~e~~f~~~~~~~lD~~~~~~~~~~~~~rWL~~rldll~~~~~~~~~~~~ 1132 (1159)
..+.-.++..+.-.+.-+......-.+-==+.-||++..+-++.+++.+
T Consensus 197 ~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~ 245 (559)
T COG4988 197 RTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYI 245 (559)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888877777776666655544444445567777766555555543
No 468
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.63 E-value=6.4e-08 Score=128.32 Aligned_cols=77 Identities=23% Similarity=0.282 Sum_probs=65.8
Q ss_pred CCCCCHHHHHHHHHHHHHcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-
Q 001091 718 GINLSGGQKQRIQLARAVYS----------NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA- 785 (1159)
Q Consensus 718 G~~LSGGQKQRIaLARAly~----------~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~- 785 (1159)
-.+||||+++|++||+|+.. +|++++|||||++||+.+...+++ ++..+. .|+||++|||..++...
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~-~l~~l~~~g~~i~iisH~~~~~~~~ 1026 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIG-ILDAIREGSKMIGIISHVPEFRERI 1026 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCcHHHHHhh
Confidence 46899999999999999985 799999999999999999877655 555543 58999999999998754
Q ss_pred cCEEEEEeCC
Q 001091 786 ADLVLVMKDG 795 (1159)
Q Consensus 786 aD~Iivl~~G 795 (1159)
+|+|.|+++|
T Consensus 1027 ~~~i~v~~~~ 1036 (1042)
T TIGR00618 1027 PHRILVKKTN 1036 (1042)
T ss_pred CCEEEEEECC
Confidence 8999999754
No 469
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.60 E-value=4.1e-07 Score=93.23 Aligned_cols=129 Identities=19% Similarity=0.153 Sum_probs=79.1
Q ss_pred EEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHH
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIE 704 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~ 704 (1159)
.++|+|++|+||||++..+++...+..|. +.|.+++.-.- ..+++... .. ..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~-------v~~~~~e~~~~--~~~~~~~~-----------------~~--~~ 52 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGK-------VVYVDIEEEIE--ELTERLIG-----------------ES--LK 52 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCE-------EEEEECCcchH--HHHHHHhh-----------------hh--hc
Confidence 36899999999999999999988764443 46777653211 12222100 00 00
Q ss_pred hccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCC----------CHHHHHHHHHHHHhhhc-CCcEE
Q 001091 705 MWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAV----------DAHTGTHLFKQCLMGLL-SQKTV 773 (1159)
Q Consensus 705 ~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SAL----------D~~t~~~if~~~i~g~l-~~kTv 773 (1159)
. ..+....+......-+.++.++++.+++...+++++++||+.+-+ |....+ .+.+...... .+.|+
T Consensus 53 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~~~~~~~~v 130 (165)
T cd01120 53 G-ALDNLIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDE-ELRELLERARKGGVTV 130 (165)
T ss_pred c-ccccEEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHH-HHHHHHHHHhcCCceE
Confidence 0 011112222333344566777889999999999999999999544 444333 3344333332 37899
Q ss_pred EEEccCcccc
Q 001091 774 LYTTHQLEFL 783 (1159)
Q Consensus 774 IlVTH~l~~l 783 (1159)
|+++|.....
T Consensus 131 v~~~~~~~~~ 140 (165)
T cd01120 131 IFTLQVPSGD 140 (165)
T ss_pred EEEEecCCcc
Confidence 9999987543
No 470
>PRK00064 recF recombination protein F; Reviewed
Probab=98.59 E-value=9.4e-08 Score=111.90 Aligned_cols=76 Identities=29% Similarity=0.353 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc---c
Q 001091 719 INLSGGQKQRIQLARAVY---------SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA---A 786 (1159)
Q Consensus 719 ~~LSGGQKQRIaLARAly---------~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~---a 786 (1159)
..+|+||+++++||+++. .+|+|+|||||+|.||++..+.+++. +... +.+++++||+.+.++. .
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~-l~~~--~~qv~it~~~~~~~~~~~~~ 348 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLER-LKGL--GAQVFITTTDLEDLADLLEN 348 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHH-Hhcc--CCEEEEEcCChhhhhhhhcc
Confidence 479999999999999885 79999999999999999998777653 3321 4688999998876544 4
Q ss_pred CEEEEEeCCeE
Q 001091 787 DLVLVMKDGKI 797 (1159)
Q Consensus 787 D~Iivl~~G~I 797 (1159)
++++.|++|+|
T Consensus 349 ~~i~~v~~G~i 359 (361)
T PRK00064 349 AKIFHVEQGKI 359 (361)
T ss_pred CcEEEEeCCEE
Confidence 68999999997
No 471
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.58 E-value=7.3e-08 Score=104.51 Aligned_cols=137 Identities=18% Similarity=0.203 Sum_probs=84.5
Q ss_pred cccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCC-CcEEEECCEEEEEecCCCCC-CCcHHHHHhcCCCCCh
Q 001091 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS-GAAIKVHGKKAYVPQSSWIQ-TGTIRENILFGKDMRQ 687 (1159)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~-G~i~~v~g~iayv~Q~pwi~-~gTIreNIlfG~~~d~ 687 (1159)
.++.+| ++..++|++++|+||+|+||||+++.+.+..-..+ |. .+..+-+-++--.-|+ .-.-+||+..|...
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~--~vpa~~~~i~~~~~i~~~~~~~d~~~~~~St-- 92 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM--DVPAKSMRLSLVDRIFTRIGARDDIMKGEST-- 92 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC--ccCccccEeccccEEEEecCcccccccCcch--
Confidence 467778 99999999999999999999999998876532211 22 1111111111101111 11233444333211
Q ss_pred HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh
Q 001091 688 SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL 767 (1159)
Q Consensus 688 ~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~ 767 (1159)
.+ .+-+|++-.=....+++++|||||.++.|+..+..+....+..+
T Consensus 93 -F~---------------------------------~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L 138 (218)
T cd03286 93 -FM---------------------------------VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYL 138 (218)
T ss_pred -HH---------------------------------HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHH
Confidence 00 11222211111125789999999999999999998887766665
Q ss_pred cC--CcEEEEEccCcccccc
Q 001091 768 LS--QKTVLYTTHQLEFLDA 785 (1159)
Q Consensus 768 l~--~kTvIlVTH~l~~l~~ 785 (1159)
.+ +.++|++||..+....
T Consensus 139 ~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 139 VKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHhcCCcEEEEeccHHHHHH
Confidence 54 7899999999887544
No 472
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.58 E-value=2.7e-07 Score=118.67 Aligned_cols=68 Identities=12% Similarity=0.241 Sum_probs=54.2
Q ss_pred HccCCCEEEEeCCCCCC-CHHHHHHHHHHHHhhhc-CCcEEEEEccCcccc----------cccCEEEEEeCCeEEEecC
Q 001091 735 VYSNSDVYIFDDPFSAV-DAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL----------DAADLVLVMKDGKIEQSGK 802 (1159)
Q Consensus 735 ly~~a~I~LLDDp~SAL-D~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l----------~~aD~Iivl~~G~I~e~Gt 802 (1159)
+..+|.++++|||.++| |+...+.+ .+.++... +|.++|++||+++.+ ..||.+++|.+|++.+.|+
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i-~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKI-REWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 46799999999999999 57765554 55565543 488999999999875 4699999999999877664
Q ss_pred h
Q 001091 803 Y 803 (1159)
Q Consensus 803 ~ 803 (1159)
.
T Consensus 728 ~ 728 (818)
T PRK13830 728 R 728 (818)
T ss_pred H
Confidence 3
No 473
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.58 E-value=5.3e-08 Score=131.54 Aligned_cols=76 Identities=20% Similarity=0.198 Sum_probs=66.1
Q ss_pred CCCCCCCHHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEE
Q 001091 716 ERGINLSGGQKQRIQLARAV----YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLV 791 (1159)
Q Consensus 716 e~G~~LSGGQKQRIaLARAl----y~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iiv 791 (1159)
.....||||||||++||||+ +++|++||||||+++||+.....+. +++..+.++.|+|+|||+++.+..||+++.
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~-~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~ 1163 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFA-NLLKEFSKNTQFIVITHNKGTMEVADQLYG 1163 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHH-HHHHHhccCCEEEEEEcChhHHHHhhhHee
Confidence 35568999999999999998 5788999999999999999877664 567666677899999999999989999975
Q ss_pred E
Q 001091 792 M 792 (1159)
Q Consensus 792 l 792 (1159)
+
T Consensus 1164 ~ 1164 (1179)
T TIGR02168 1164 V 1164 (1179)
T ss_pred e
Confidence 5
No 474
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.56 E-value=8.9e-07 Score=87.48 Aligned_cols=119 Identities=28% Similarity=0.344 Sum_probs=83.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccch
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQ 701 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~ 701 (1159)
+|..+.|+||+||||||+++.|++.+......+..++... .........+
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~----------------------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED-------ILEEVLDQLL----------------------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE-------ccccCHHHHH-----------------------
Confidence 4678999999999999999999999877652232333321 1111111111
Q ss_pred HHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH------HHhhhcCCcEEEE
Q 001091 702 DIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQ------CLMGLLSQKTVLY 775 (1159)
Q Consensus 702 dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~------~i~g~l~~kTvIl 775 (1159)
....++......+++.++..+++|-+.+++++++||+....+.......... .......+..+|.
T Consensus 51 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 121 (148)
T smart00382 51 ---------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVIL 121 (148)
T ss_pred ---------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEE
Confidence 2334556678899999999999999999999999999999999887655431 1123345677888
Q ss_pred EccC
Q 001091 776 TTHQ 779 (1159)
Q Consensus 776 VTH~ 779 (1159)
++|.
T Consensus 122 ~~~~ 125 (148)
T smart00382 122 TTND 125 (148)
T ss_pred EeCC
Confidence 8874
No 475
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.52 E-value=8.7e-07 Score=97.66 Aligned_cols=148 Identities=20% Similarity=0.138 Sum_probs=88.1
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHH-hcCCCCChHHHHHHHHHh
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI-LFGKDMRQSFYEEVLEGC 697 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNI-lfG~~~d~~~y~~vl~ac 697 (1159)
-+|+|+.+.|.|++|||||+|...++-+.-. +| .++.|++.+--. ..+.+|. .||-+.++.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g------~~~~y~~~e~~~--~~~~~~~~~~g~~~~~~--------- 82 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QG------KKVYVITTENTS--KSYLKQMESVKIDISDF--------- 82 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CC------CEEEEEEcCCCH--HHHHHHHHHCCCChhHH---------
Confidence 3789999999999999999999998744322 23 346777763211 1122222 233221110
Q ss_pred ccchHHHhccCCCCcccc---CCCCCCCHHHHHHHHHHHHHcc--CCCEEEEeCCCCCCC---HHHHHHHHHHHHhhh-c
Q 001091 698 ALNQDIEMWADGDLSVVG---ERGINLSGGQKQRIQLARAVYS--NSDVYIFDDPFSAVD---AHTGTHLFKQCLMGL-L 768 (1159)
Q Consensus 698 ~L~~dl~~lp~Gd~T~IG---e~G~~LSGGQKQRIaLARAly~--~a~I~LLDDp~SALD---~~t~~~if~~~i~g~-l 768 (1159)
+..|....+. ++....|.++++.+...+.... +|+++++|+|++.+| .+.-..+++ .+..+ .
T Consensus 83 --------~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~-~l~~l~~ 153 (234)
T PRK06067 83 --------FLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT-EAKNLVD 153 (234)
T ss_pred --------HhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH-HHHHHHh
Confidence 0112111111 1223457789999999999987 999999999996544 333223322 23222 2
Q ss_pred CCcEEEEEccCcccc-------c-ccCEEEEEe
Q 001091 769 SQKTVLYTTHQLEFL-------D-AADLVLVMK 793 (1159)
Q Consensus 769 ~~kTvIlVTH~l~~l-------~-~aD~Iivl~ 793 (1159)
+++|+++++|..... . -+|-++.|+
T Consensus 154 ~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 154 LGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred CCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 578999999976542 1 256666665
No 476
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.50 E-value=2.1e-07 Score=102.14 Aligned_cols=63 Identities=25% Similarity=0.353 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEccCcccc
Q 001091 720 NLSGGQKQRIQLARAVYSNS---DVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFL 783 (1159)
Q Consensus 720 ~LSGGQKQRIaLARAly~~a---~I~LLDDp~SALD~~t~~~if~~~i~g~l~-~kTvIlVTH~l~~l 783 (1159)
.+|.|+||.+.|+-+++..+ .++++|||-++|+|...+.++ +.+....+ +.-+|++||.+.++
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~-~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLI-ELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHH-HHHHHTGGGSSEEEEEES-GGG-
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHH-HHHHhhCccCCEEEEeCccchhc
Confidence 46999999999999988776 899999999999999998887 45655555 78999999998765
No 477
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.46 E-value=5.7e-07 Score=105.99 Aligned_cols=152 Identities=19% Similarity=0.177 Sum_probs=106.2
Q ss_pred ccCCeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHH
Q 001091 614 LTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEV 693 (1159)
Q Consensus 614 L~~nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~v 693 (1159)
++..+.+.+|++++|+|++|+|||||++.|.|..++..|.+ +++.|.. -+++|.+. +.
T Consensus 147 ID~ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI-------~~iGerg----~ev~e~~~-----------~~ 204 (432)
T PRK06793 147 IDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVI-------SLVGERG----REVKDFIR-----------KE 204 (432)
T ss_pred EeccceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEE-------EeCCCCc----ccHHHHHH-----------HH
Confidence 33379999999999999999999999999999998877644 4555554 45555542 11
Q ss_pred HHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHc-------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q 001091 694 LEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY-------SNSDVYIFDDPFSAVDAHTGTHLFKQCLMG 766 (1159)
Q Consensus 694 l~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly-------~~a~I~LLDDp~SALD~~t~~~if~~~i~g 766 (1159)
+..-++ ..|.+=-.-.+-|.|+|+|++.+.+.. .++-++++||+|...|+.- .| ...+..
T Consensus 205 l~~~gl----------~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~r--ei-sl~~~e 271 (432)
T PRK06793 205 LGEEGM----------RKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARR--SV-DIAVKE 271 (432)
T ss_pred hhhccc----------ceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHHH--HH-HHHhcC
Confidence 111111 122232445678999999999988876 5788999999999999973 22 223322
Q ss_pred hc-CCcEEEEEccCcccccccCEEEEEeCCeEEEecCh
Q 001091 767 LL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1159)
Q Consensus 767 ~l-~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~ 803 (1159)
.- .|.|..+.||..+.++.+-+ .++|.|...++-
T Consensus 272 ~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~tv 306 (432)
T PRK06793 272 LPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYTV 306 (432)
T ss_pred CCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEEE
Confidence 22 47888888996666666665 378888766553
No 478
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.46 E-value=4.9e-08 Score=104.65 Aligned_cols=100 Identities=18% Similarity=0.201 Sum_probs=78.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcH--HHHHh----cCCCCChHHHHHHHHHhc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTI--RENIL----FGKDMRQSFYEEVLEGCA 698 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTI--reNIl----fG~~~d~~~y~~vl~ac~ 698 (1159)
+++|+|++|||||||++.+++++++..| +..+...+++..|.+|+.+.++ +||+. -|.+....|++.+...|+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 81 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDASMNLEA 81 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHHHHHHH
Confidence 6899999999999999999999887655 4255556666667777766542 44542 356777788999999999
Q ss_pred cchHHHhccCCCCccccCCCCCCCHHH
Q 001091 699 LNQDIEMWADGDLSVVGERGINLSGGQ 725 (1159)
Q Consensus 699 L~~dl~~lp~Gd~T~IGe~G~~LSGGQ 725 (1159)
|.++++.+|++|.+.|+..|.++|.--
T Consensus 82 L~~l~~~~~~~D~iiIEt~G~~l~~~~ 108 (199)
T TIGR00101 82 VAEMEARFPPLEMVFIESGGDNLSATF 108 (199)
T ss_pred HHHHHhcCCCCCEEEEECCCCCccccc
Confidence 999888889999999999997766544
No 479
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=0.00018 Score=85.05 Aligned_cols=197 Identities=13% Similarity=0.161 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 001091 954 IAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLF 1033 (1159)
Q Consensus 954 ~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~i~vi~~~~~~~~~~~ 1033 (1159)
...+.-..++.++++++.-.+..-.+.--.|+++||...|++.+|+..=..+.-.+..+...+++++..++..|++.+.+
T Consensus 85 AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll 164 (573)
T COG4987 85 ATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLL 164 (573)
T ss_pred HHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34556667888888888777777777778999999999999999998877777777776666666666666677665443
Q ss_pred HH-HHHHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccchHHHHHHHHHHHhhhhhhHHHHHHHhHH
Q 001091 1034 LV-ILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEW 1112 (1159)
Q Consensus 1034 iP-l~~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~f~~~~~~~lD~~~~~~~~~~~~~rW 1112 (1159)
.- ++++...+--.+.+.+|..++--...|.-.++||.|-++|.+--+.||++++|.+.+.+..+...+...-......|
T Consensus 165 ~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~ 244 (573)
T COG4987 165 GLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGL 244 (573)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22222222222223334343333456778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhcCCCCCC-HHHHHHHHH
Q 001091 1113 LCLRINLLFNFAFFLVLII-LVTLPRSAID-PSKFLQLFI 1150 (1159)
Q Consensus 1113 L~~rldll~~~~~~~~~~~-~v~~~~~~~~-~g~v~~~~~ 1150 (1159)
-..-+.++.++++....+- +.....|..+ |+.++..++
T Consensus 245 ~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~ 284 (573)
T COG4987 245 SDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLV 284 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHH
Confidence 9999999888765533222 2223345444 454444443
No 480
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.39 E-value=3.8e-07 Score=123.23 Aligned_cols=76 Identities=17% Similarity=0.190 Sum_probs=65.3
Q ss_pred CCCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEE
Q 001091 717 RGINLSGGQKQRIQLARAVY----SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM 792 (1159)
Q Consensus 717 ~G~~LSGGQKQRIaLARAly----~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl 792 (1159)
....||||||++++||+++. .+|++|+||||+++||+.....+ .+.+..+.++.++|+|||+...+..||+++.+
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~-~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~ 1149 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERV-AKLIREKAGEAQFIVVSLRSPMIEYADRAIGV 1149 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHH-HHHHHHhcCCCeEEEEECcHHHHHhcceeEeE
Confidence 34579999999999999996 58899999999999999986655 44666666678899999999999999999877
Q ss_pred e
Q 001091 793 K 793 (1159)
Q Consensus 793 ~ 793 (1159)
.
T Consensus 1150 ~ 1150 (1164)
T TIGR02169 1150 T 1150 (1164)
T ss_pred E
Confidence 4
No 481
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.34 E-value=8.2e-07 Score=117.32 Aligned_cols=76 Identities=26% Similarity=0.251 Sum_probs=61.9
Q ss_pred CCCCCHHHHHHHHHHHHHcc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cC
Q 001091 718 GINLSGGQKQRIQLARAVYS--------NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-AD 787 (1159)
Q Consensus 718 G~~LSGGQKQRIaLARAly~--------~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD 787 (1159)
..+|||||++|++||||+.. +|++++|||||++||+.+...+.+ .+..+. .|+||++|||..+.... ..
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~-~l~~l~~~g~~v~iisH~~~l~~~i~~ 1025 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALD-ALDALNASGKTIGVISHVEAMKERIPV 1025 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHCCCEEEEEecHHHHHHhccc
Confidence 46899999999999999995 899999999999999999777654 566554 58999999996666544 45
Q ss_pred EEEEEeC
Q 001091 788 LVLVMKD 794 (1159)
Q Consensus 788 ~Iivl~~ 794 (1159)
+|.|-..
T Consensus 1026 qi~V~k~ 1032 (1047)
T PRK10246 1026 QIKVKKI 1032 (1047)
T ss_pred eEEEEEC
Confidence 6666543
No 482
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.28 E-value=9.1e-07 Score=103.01 Aligned_cols=123 Identities=22% Similarity=0.262 Sum_probs=81.4
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhCCccCC-CCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhc
Q 001091 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCA 698 (1159)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~-~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~ 698 (1159)
.+++..+.|+||+||||||+++++++++++. +|.|+.+...+-|..+. . .|
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~------------------~---------~~- 170 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRN------------------K---------RS- 170 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccC------------------c---------cc-
Confidence 4678999999999999999999999988753 45553222211111000 0 00
Q ss_pred cchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEcc
Q 001091 699 LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTH 778 (1159)
Q Consensus 699 L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH 778 (1159)
+ + .+.++|..+.+ -.=++++|+-++||++++||+. |+++....++ ....|.+++.+.|
T Consensus 171 ~---i------~q~evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~H 228 (343)
T TIGR01420 171 L---I------NQREVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLH 228 (343)
T ss_pred e---E------EccccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEc
Confidence 0 0 01223433222 2335788999999999999997 8888765444 3456889999999
Q ss_pred CcccccccCEEEEE
Q 001091 779 QLEFLDAADLVLVM 792 (1159)
Q Consensus 779 ~l~~l~~aD~Iivl 792 (1159)
..+.....|+++-|
T Consensus 229 a~~~~~~~~Rl~~~ 242 (343)
T TIGR01420 229 TNSAAQTIERIIDV 242 (343)
T ss_pred CCCHHHHHHHHHHh
Confidence 98877777777654
No 483
>PRK02224 chromosome segregation protein; Provisional
Probab=98.28 E-value=1.1e-06 Score=115.25 Aligned_cols=75 Identities=21% Similarity=0.337 Sum_probs=62.5
Q ss_pred CCCCHHHHH------HHHHHHHHccC------CCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC-C-cEEEEEccCccccc
Q 001091 719 INLSGGQKQ------RIQLARAVYSN------SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-Q-KTVLYTTHQLEFLD 784 (1159)
Q Consensus 719 ~~LSGGQKQ------RIaLARAly~~------a~I~LLDDp~SALD~~t~~~if~~~i~g~l~-~-kTvIlVTH~l~~l~ 784 (1159)
..||||||| |+++||++..+ +++++|||||+++|+.....+.+ .+..+.. | .++|+|||+.+++.
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~-~l~~~~~~~~~qviiish~~~~~~ 858 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVD-LVESMRRLGVEQIVVVSHDDELVG 858 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHH-HHHHHHhcCCCeEEEEECChHHHH
Confidence 489999999 99999999863 36799999999999998777654 4544432 4 48999999999999
Q ss_pred ccCEEEEEeC
Q 001091 785 AADLVLVMKD 794 (1159)
Q Consensus 785 ~aD~Iivl~~ 794 (1159)
.||+++.|..
T Consensus 859 ~ad~~~~~~~ 868 (880)
T PRK02224 859 AADDLVRVEK 868 (880)
T ss_pred hcCeeEEeec
Confidence 9999999964
No 484
>PRK12369 putative transporter; Reviewed
Probab=98.27 E-value=0.0086 Score=69.11 Aligned_cols=224 Identities=14% Similarity=0.035 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhh-
Q 001091 337 QWYFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLG- 414 (1159)
Q Consensus 337 ~~~~~~~r~~~riR~~L~~~iy~K~L~ls~~~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg- 414 (1159)
...|..+++..+.|..|+....++=+..+..-.++ =.+++.|++++.+... ....+...++.++.-..+||..-|
T Consensus 82 ~~~~~~~~l~i~WR~wLT~~~l~~wl~~~~~iDNP---DQRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS~~ 158 (326)
T PRK12369 82 VVDYFASHYAFRWREAMTFSYLKFWRNKRDNIEGS---SQRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLSDG 158 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc---cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34556788999999999999999988754321122 1578889988877543 445566666677666777886332
Q ss_pred ----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHhchHHHHHhccH-HHHHHHH
Q 001091 415 ----------AAPAFAALFSTIFVMVSNTPLANRQERFHS-MIMEAKDARIKATS--ETLKSMRVLKLLSWE-QEFLKKL 480 (1159)
Q Consensus 415 ----------~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~-~~~~~~d~R~~~~~--E~L~~ik~IK~~~wE-~~f~~~i 480 (1159)
....++.++..++...+...+++...+..- +....-|=|-.++. |--.+ | -| ....++.
T Consensus 159 l~~~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~------~-~E~~~l~~~f 231 (326)
T PRK12369 159 VSLPFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN------Y-AKPETLIELF 231 (326)
T ss_pred ceeeecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh------h-hhHHHHHHHH
Confidence 122333333333444444555554433322 22223344443332 11101 1 12 2334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 481 LRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTK 560 (1159)
Q Consensus 481 ~~~R~~E~~~l~~~~~~~~~~~~~~~~~~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~ 560 (1159)
.+.++.-.+..++......+........+.+-.++ ..-.+..++++.|.+..+-..|+.++..+..+.+.+..+.+=.
T Consensus 232 ~~v~~n~~~~~~~~~~l~~~~~~y~~~~~i~p~li--~aP~y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~ 309 (326)
T PRK12369 232 TGLRFNYFRLFLHYGYFNIWLISFSQMMVIVPYLI--MAPGLFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELR 309 (326)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554434444444444433333333322222122 1222457789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 001091 561 VSLYRIQEFIKE 572 (1159)
Q Consensus 561 vs~~RI~~fL~~ 572 (1159)
.+.+|+.+|.+.
T Consensus 310 A~~~RL~~f~~~ 321 (326)
T PRK12369 310 SIYKRLKEFEKN 321 (326)
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 485
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.25 E-value=8.1e-07 Score=104.35 Aligned_cols=47 Identities=23% Similarity=0.314 Sum_probs=41.8
Q ss_pred cccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCC-cEEEECCE
Q 001091 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG-AAIKVHGK 660 (1159)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G-~i~~v~g~ 660 (1159)
..+|++ |+++++||+++|||||||||||||+ .|..+|.+| +| .++|+
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I-~ldg~ 67 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEF-FLDAT 67 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEE-EECCE
Confidence 357899 9999999999999999999999999 677788888 58 88875
No 486
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.22 E-value=1.1e-05 Score=93.43 Aligned_cols=154 Identities=20% Similarity=0.259 Sum_probs=109.4
Q ss_pred eEeeCCcEEEEEcCCCCChhHHHHHHh-CCccCCCCc----EEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHH
Q 001091 618 MKIMKGSKVAVCGSVGSGKSSLLSSIL-GEIPRISGA----AIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEE 692 (1159)
Q Consensus 618 l~i~~G~~vaIvG~~GSGKSTLL~~ll-Ge~~~~~G~----i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~ 692 (1159)
+-||+| ++.|||..--||||||++|. |-|+...|. |++... ...+- .-| -+
T Consensus 240 MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipGDGRE~VVT~~~-avkir------------------AED----GR 295 (448)
T PF09818_consen 240 MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPGDGREFVVTDPD-AVKIR------------------AED----GR 295 (448)
T ss_pred EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCCCCceEEEECCC-ceEEE------------------ecC----Cc
Confidence 779999 99999999999999999996 667766552 101111 11110 001 12
Q ss_pred HHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH--------
Q 001091 693 VLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL-------- 764 (1159)
Q Consensus 693 vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i-------- 764 (1159)
.++.+.+..+|..||.|.+|. -=.-.|=||---|=-+|..|+-..++++|+||=|||-.--+....+++++
T Consensus 296 ~V~~vDISpFI~~LP~g~dT~-~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPIT 374 (448)
T PF09818_consen 296 SVEGVDISPFINNLPGGKDTT-CFSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPIT 374 (448)
T ss_pred eEeCccchHHHhhCCCCCCCC-cccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcc
Confidence 445667889999999999987 33344779999999999999999999999999999985444333334433
Q ss_pred ------hhhc--CCcEEEEEccCc-ccccccCEEEEEeCCe
Q 001091 765 ------MGLL--SQKTVLYTTHQL-EFLDAADLVLVMKDGK 796 (1159)
Q Consensus 765 ------~g~l--~~kTvIlVTH~l-~~l~~aD~Iivl~~G~ 796 (1159)
+.+. .|-+.|+|+-.. .++..||+|++|++=+
T Consensus 375 Pfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~ 415 (448)
T PF09818_consen 375 PFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYR 415 (448)
T ss_pred hHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCcc
Confidence 1221 366666666554 5789999999999754
No 487
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.19 E-value=4.2e-06 Score=96.94 Aligned_cols=101 Identities=16% Similarity=0.133 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEEEeCCcccccCCCccccc-----------C-CeEe
Q 001091 553 ISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLT-----------D-KMKI 620 (1159)
Q Consensus 553 i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~-----------~-nl~i 620 (1159)
+..-.++..+.+|+.+.++.+..... .+ ......++|+|++|.||++ .+.|+ | ++.|
T Consensus 97 v~g~~R~~~~~ER~~~Ll~v~~vn~~---~~-e~~~~ri~Fe~LTf~YP~e-------r~~Le~~~~~~~~R~id~~~pi 165 (415)
T TIGR00767 97 IEGQIRSPKEGERYFALLKVESVNGD---DP-EKAKNRVLFENLTPLYPNE-------RLRLETSTEDLSTRVLDLFAPI 165 (415)
T ss_pred EEEEEeccccHhHHHHHhCCCccCCC---Cc-cccCCCeEEEEeeecCCCc-------cceeecCccccceeeeeeEEEe
Confidence 34445566788999999987652110 11 1224579999999999865 35664 7 8999
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCC
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~p 668 (1159)
.+||.++|+||+|+|||||++.|...+....-.+ . .+.++.+++
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv-~---v~VlLIgER 209 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEV-E---LIVLLIDER 209 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhcccCCce-E---EEEEEcCCC
Confidence 9999999999999999999999999886542222 1 155666553
No 488
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.16 E-value=2.4e-06 Score=99.99 Aligned_cols=62 Identities=26% Similarity=0.280 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHHHcc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc
Q 001091 720 NLSGGQKQRIQLARAVYS---------NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD 784 (1159)
Q Consensus 720 ~LSGGQKQRIaLARAly~---------~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~ 784 (1159)
.+|.||++++.||.++.. +|+|+|||||+|.||++..+.+++. +... |.+++++||+.+.++
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~-l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAEL-LQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHH-Hhhc--CCEEEEEecChhhcc
Confidence 589999999999999999 9999999999999999987776653 3222 679999999987654
No 489
>PRK11098 microcin B17 transporter; Reviewed
Probab=98.11 E-value=0.02 Score=67.57 Aligned_cols=224 Identities=10% Similarity=0.003 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhhh-
Q 001091 338 WYFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGA- 415 (1159)
Q Consensus 338 ~~~~~~r~~~riR~~L~~~iy~K~L~ls~~~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg~- 415 (1159)
..+..+++..|-|..|+....++=++++.-+. .=.+++.|++++.+... ....+...++.++.-+.+||..-|.
T Consensus 158 ~~~~~~~l~irWR~wLT~~yl~~Wl~~r~ien----PDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~l 233 (409)
T PRK11098 158 NNFFVSHYVFRWRTAMNEYYMAHWQKLRHIEG----AAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHV 233 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34556788899999999998887776642221 34577888888766543 3445556666666666677763331
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhchHHHHHhccH-HHHHHHHHH
Q 001091 416 -----------APAFAALFSTIFVMVSNTPLANRQERFHSMIM-EAKDARIKATSETLKSMRVLKLLSWE-QEFLKKLLR 482 (1159)
Q Consensus 416 -----------~~~l~~l~~~i~~~~~~~~~~~~~~~~~~~~~-~~~d~R~~~~~E~L~~ik~IK~~~wE-~~f~~~i~~ 482 (1159)
....++++-.++...+...++++..+..-+.. ..-|=|-+++. .=.+-. .-| +...++..+
T Consensus 234 ~~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVr-vrenaE-----~~E~~~L~~~F~~ 307 (409)
T PRK11098 234 PELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVY-GEDDAD-----RATPPTVRELFSN 307 (409)
T ss_pred ccccccCCCchHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhH-hhhhhh-----HHHHHHHHHHHHH
Confidence 11222232233333333444444433322222 22233333221 000000 113 234455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 483 LREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVS 562 (1159)
Q Consensus 483 ~R~~E~~~l~~~~~~~~~~~~~~~~~~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs 562 (1159)
.|+.-.+..+...+..............+-.++. .=.+..+++|.|.+..+...|+.++..+..+.+....+.+-+..
T Consensus 308 V~~N~~rl~~~~~~l~~f~~~y~~~~~i~P~iv~--aP~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~lael~A~ 385 (409)
T PRK11098 308 VRKNYFRLYFHYMYFNIARILYLQVDNVFGLFLL--FPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSI 385 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555545444444444444333332222221221 22235678999999999999999999999999999999999999
Q ss_pred HHHHHHHhccc
Q 001091 563 LYRIQEFIKED 573 (1159)
Q Consensus 563 ~~RI~~fL~~~ 573 (1159)
.+|+.+|.+.-
T Consensus 386 ~~RL~~F~~~l 396 (409)
T PRK11098 386 YKRLRSFEAAL 396 (409)
T ss_pred HHHHHHHHHHH
Confidence 99999998753
No 490
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.09 E-value=3.6e-06 Score=100.71 Aligned_cols=144 Identities=14% Similarity=0.176 Sum_probs=86.5
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhc-CCCCChHHHHHHHHHh
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILF-GKDMRQSFYEEVLEGC 697 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlf-G~~~d~~~y~~vl~ac 697 (1159)
.+++|+.++++||+|+||||++..|.+.+.+..|.. +|+++++|+ +..+..||+.+ ++.++-. ...+-+..
T Consensus 252 ~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----kV~LI~~Dt--~RigA~EQLr~~AeilGVp-v~~~~~~~ 323 (484)
T PRK06995 252 LLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----KVALLTTDS--YRIGGHEQLRIYGKILGVP-VHAVKDAA 323 (484)
T ss_pred cccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----eEEEEeCCc--cchhHHHHHHHHHHHhCCC-eeccCCch
Confidence 355789999999999999999999999987777753 568999998 77888999964 3321100 00000111
Q ss_pred ccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCC-----CEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcE
Q 001091 698 ALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS-----DVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT 772 (1159)
Q Consensus 698 ~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a-----~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kT 772 (1159)
.+...+..+.+.|...|..-|.+-. ..++..+.+..+++ .+++||.++..-|... +.+. ++. .+.+
T Consensus 324 Dl~~aL~~L~d~d~VLIDTaGr~~~---d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~---i~~~-f~~--~~~~ 394 (484)
T PRK06995 324 DLRLALSELRNKHIVLIDTIGMSQR---DRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNE---VVQA-YRG--PGLA 394 (484)
T ss_pred hHHHHHHhccCCCeEEeCCCCcChh---hHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHH---HHHH-hcc--CCCC
Confidence 1223455666778888888664321 11223333334443 5788888777643322 2111 111 2456
Q ss_pred EEEEccC
Q 001091 773 VLYTTHQ 779 (1159)
Q Consensus 773 vIlVTH~ 779 (1159)
-++.|+-
T Consensus 395 g~IlTKl 401 (484)
T PRK06995 395 GCILTKL 401 (484)
T ss_pred EEEEeCC
Confidence 6667763
No 491
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.07 E-value=3.5e-06 Score=90.32 Aligned_cols=108 Identities=14% Similarity=0.210 Sum_probs=68.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHH-----hcC--CCCChHHHHHHHHHh
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI-----LFG--KDMRQSFYEEVLEGC 697 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNI-----lfG--~~~d~~~y~~vl~ac 697 (1159)
+++|+|++|||||||.+.|.+.+ ..|. +.+++++.+...-+.+++- .++ .+++.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~-------~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 65 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPK-------VVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLI------ 65 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCC-------eEEEEecccccccccccHHHhccCCCCCCCcccHHHHH------
Confidence 47999999999999999999987 2333 3566666655433333322 222 234433333
Q ss_pred ccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 001091 698 ALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755 (1159)
Q Consensus 698 ~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t 755 (1159)
+++..+-.|.. +--...+.|.|++++..+ ...+++++++|.|+...++..
T Consensus 66 ---~~l~~l~~~~~--~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~~ 115 (198)
T cd02023 66 ---SHLQDLKNGKS--VEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKEL 115 (198)
T ss_pred ---HHHHHHHCCCC--EeccccccccCcccCCce---ecCCCCEEEEechhhccchhH
Confidence 34444444432 223445777887776544 568899999999999988743
No 492
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.07 E-value=5.3e-06 Score=91.74 Aligned_cols=129 Identities=22% Similarity=0.330 Sum_probs=71.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCCcc---CCCC---cEEEECCEEEEEecC-CCCCCCcHHHHHhcCCCCChHHHHHHHH
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGEIP---RISG---AAIKVHGKKAYVPQS-SWIQTGTIRENILFGKDMRQSFYEEVLE 695 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe~~---~~~G---~i~~v~g~iayv~Q~-pwi~~gTIreNIlfG~~~d~~~y~~vl~ 695 (1159)
|++.+|+||.|+|||+|...+.=-+- +.-| .. .-.+++-|++=| |. ..+ .+|.+.+..
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~-~~~~~Vlyi~~Ed~~---~~i-----------~~Rl~~i~~ 65 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKV-TEPGRVVYLSAEDPR---EEI-----------HRRLEAILQ 65 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCcccc-CCCceEEEEECCCCH---HHH-----------HHHHHHHHh
Confidence 77899999999999999987752110 1111 01 123445565421 10 001 234444444
Q ss_pred HhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHH----------------HHccCCCEEEEeCCCCC------CCH
Q 001091 696 GCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR----------------AVYSNSDVYIFDDPFSA------VDA 753 (1159)
Q Consensus 696 ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLAR----------------Aly~~a~I~LLDDp~SA------LD~ 753 (1159)
.+++.+ .++. .-..+|+.|++.+++ +...+|+++++| |+++ .|+
T Consensus 66 ~~~~~~----~~~r---------l~~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~ 131 (239)
T cd01125 66 HLEPDD----AGDR---------LFIDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDN 131 (239)
T ss_pred hcCCcC----cccc---------eEEeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCH
Confidence 443211 1100 011245556655554 345799999999 8875 588
Q ss_pred HHHHHHHHHHHhhhc--CCcEEEEEccCcc
Q 001091 754 HTGTHLFKQCLMGLL--SQKTVLYTTHQLE 781 (1159)
Q Consensus 754 ~t~~~if~~~i~g~l--~~kTvIlVTH~l~ 781 (1159)
.....+++. +..+. .|.|+|+++|...
T Consensus 132 ~~~~~~~~~-L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 132 GAMDAVIKA-LRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHHHHHHHH-HHHHHHHhCCEEEEEeccCc
Confidence 776666554 44433 3789999999653
No 493
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.04 E-value=4.6e-05 Score=78.46 Aligned_cols=167 Identities=20% Similarity=0.277 Sum_probs=91.5
Q ss_pred eEeeCCcEEEEEcCCCCChhHHHHHHhCCcc--CCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcC--CCC------Ch
Q 001091 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--RISGAAIKVHGKKAYVPQSSWIQTGTIRENILFG--KDM------RQ 687 (1159)
Q Consensus 618 l~i~~G~~vaIvG~~GSGKSTLL~~llGe~~--~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG--~~~------d~ 687 (1159)
|++++ -++.|+|.+||||||||.+|.--|. +..|.- ...+.+ -.....+.+++..- ++. ..
T Consensus 33 LeF~a-pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~-n~~~~~-------~~s~s~l~~~~k~~~~~k~~~g~FlRA 103 (233)
T COG3910 33 LEFRA-PITFITGENGSGKSTLLEAIAAGMGFNAAGGGK-NFKGEL-------DASHSALVDYAKLHKRKKPPIGFFLRA 103 (233)
T ss_pred ccccC-ceEEEEcCCCccHHHHHHHHHhhccccccCCCc-CcCccc-------ccccchHHHhHHHhhcCCCCcceEEeh
Confidence 44433 4899999999999999999975543 233332 222211 11223344555322 111 12
Q ss_pred HHHHHHHHHhccchHHHhccCCCCccccCCC---CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 001091 688 SFYEEVLEGCALNQDIEMWADGDLSVVGERG---INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL 764 (1159)
Q Consensus 688 ~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G---~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i 764 (1159)
|....|.. -.+|+.... +-+| ...|-|+-=-=-..|.+ .+.-||+||||=|||-+.-.-.+... +
T Consensus 104 Es~yn~as---~~De~~~e~-------~~~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~-l 171 (233)
T COG3910 104 ESFYNVAS---YLDEADGEA-------NYGGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAI-L 171 (233)
T ss_pred hHHHHHHH---HHHhhhhhc-------ccCCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHH-H
Confidence 22222322 111221111 1112 23466665433344443 56789999999999999765444432 2
Q ss_pred hhh-cCCcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHHH
Q 001091 765 MGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1159)
Q Consensus 765 ~g~-l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL 806 (1159)
+.+ -.|.-+|++||.+=.+.. --.|+-++.|.|. .-+|+|.
T Consensus 172 ~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~~-~~~fe~t 214 (233)
T COG3910 172 RDLADSGAQIIIATHSPILLAIPGAEIYEISESGIE-ERDFEET 214 (233)
T ss_pred HHHHhcCCeEEEEecChhheeCCCcEEEEEecCCcc-ccchHHH
Confidence 333 358899999999877533 2377777766544 4456654
No 494
>PRK14079 recF recombination protein F; Provisional
Probab=98.04 E-value=8.5e-06 Score=95.08 Aligned_cols=76 Identities=20% Similarity=0.228 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEE
Q 001091 720 NLSGGQKQRIQLARAVY---------SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVL 790 (1159)
Q Consensus 720 ~LSGGQKQRIaLARAly---------~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Ii 790 (1159)
-+|+||+++++||+++. .+++++|||||+|.||.+..+.+.+ .+... .. +++| ..+.-+-+|+++
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~-~l~~~--~q--~~it-~t~~~~~~~~~~ 336 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLA-LAASL--PQ--AIVA-GTEAPPGAALTL 336 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHH-HHhcC--Cc--EEEE-cCCCCCCCceEE
Confidence 48999999999999997 8999999999999999998777754 33221 13 3444 234556699999
Q ss_pred EEeCCeEEEec
Q 001091 791 VMKDGKIEQSG 801 (1159)
Q Consensus 791 vl~~G~I~e~G 801 (1159)
.+++|++.-..
T Consensus 337 ~~~~~~~~~~~ 347 (349)
T PRK14079 337 RIEAGVFTPEA 347 (349)
T ss_pred EEeccEecCCC
Confidence 99999886543
No 495
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=97.99 E-value=0.016 Score=62.59 Aligned_cols=179 Identities=17% Similarity=0.168 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1159)
Q Consensus 266 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 345 (1159)
+++++|.+++++..+..+-+...++..+.|+++..-||-+-+++. .. ...|+...++.-++.+ ..+. .-.|.
T Consensus 1 Lk~I~r~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~~---~~-~~~~~~~~l~~~~iga-aRR~---~DTRv 72 (237)
T PF13748_consen 1 LKAIARRHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLNGDV---WQ-ALMYAALVLLMWAIGA-ARRI---YDTRV 72 (237)
T ss_pred ChhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH---HH-HHHHHHHHHHHHHHhh-hhHH---HhhHH
Confidence 368999999999999999999999999999999999998876552 22 3334433333333222 2222 33577
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHH
Q 001091 346 GIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1159)
Q Consensus 346 ~~riR~~L~~~iy~K~L~ls~~~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l~~ 424 (1159)
-.|+++.+...++-+.-+ ...+.+++..+++- ...+.||+. .+..+..+.++++.++++|...-- +..++++++
T Consensus 73 f~rIy~~la~~vi~~qr~---~~~~~S~i~ARv~l-sRE~VdFfE~~lP~lits~vsivga~vmLl~~e~-~~g~~~l~~ 147 (237)
T PF13748_consen 73 FSRIYAELAVPVILSQRQ---QGLSVSTIAARVAL-SREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEF-WLGLACLLI 147 (237)
T ss_pred HHHHHHHHhHHHHHHHHH---hCCChhHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 889999998887766432 22356666666532 334555553 566777888888888777664222 344555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKAT 457 (1159)
Q Consensus 425 ~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~ 457 (1159)
.+++..+...++++..+...+.+...+++++.+
T Consensus 148 l~~~~~i~~~f~~~~~~L~~~LNnrlE~eV~~i 180 (237)
T PF13748_consen 148 LALFLLILPRFARRNYRLYRRLNNRLEKEVDII 180 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHh
Confidence 555566666677777777777766666665443
No 496
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.99 E-value=9.1e-06 Score=86.37 Aligned_cols=43 Identities=23% Similarity=0.427 Sum_probs=38.3
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK 660 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~ 660 (1159)
.+.+++|+.++|+||+|||||||+++|+|++++..|.+ .+.+.
T Consensus 19 ~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i-~ied~ 61 (186)
T cd01130 19 WLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERII-TIEDT 61 (186)
T ss_pred HHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEE-EECCc
Confidence 46788999999999999999999999999999988877 66553
No 497
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.97 E-value=3.1e-06 Score=106.27 Aligned_cols=162 Identities=16% Similarity=0.153 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 447 MEAKDARIKATSETLKSMRVLKLLSWEQEFLKKL---------LRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITF 517 (1159)
Q Consensus 447 ~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i---------~~~R~~E~~~l~~~~~~~~~~~~~~~~~~~lv~~~~f 517 (1159)
+..+....+.+.|++.++.+||..+-|+.....+ .++.+...+..+.......+...+... ....++++
T Consensus 36 ~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~--~~~~il~i 113 (644)
T PRK10733 36 TFLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFIS--WFPMLLLI 113 (644)
T ss_pred HHHHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHH--HHHHHHHH
Confidence 3334455667788999999999887665432222 111111111111001111111112211 22334557
Q ss_pred HHHHHhcCCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEe
Q 001091 518 GVCILLKTPLTSG---AVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIE 594 (1159)
Q Consensus 518 ~~~~~~~~~Lt~~---~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~~~ 594 (1159)
+.+.++.+.++.| .++++...-..+..| ..+...+..+.....+.+|+.+..+...++..
T Consensus 114 g~~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~---------------- 176 (644)
T PRK10733 114 GVWIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREPSR---------------- 176 (644)
T ss_pred HHHHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHH----------------
Confidence 7777777777766 444444433344445 45556666777777777787776653211000
Q ss_pred eeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 595 AGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 595 ~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
.+. ...+++| +.++||+|||||++.+++.++..
T Consensus 177 -------------------~~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 177 -------------------FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred -------------------HHhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 001 1235677 99999999999999999999774
No 498
>PRK01889 GTPase RsgA; Reviewed
Probab=97.97 E-value=1e-05 Score=94.63 Aligned_cols=81 Identities=25% Similarity=0.331 Sum_probs=63.6
Q ss_pred eEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------EEEEEecCCCCCCCcHHHHHhcCCCCCh
Q 001091 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------KKAYVPQSSWIQTGTIRENILFGKDMRQ 687 (1159)
Q Consensus 618 l~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g----------~iayv~Q~pwi~~gTIreNIlfG~~~d~ 687 (1159)
-.+++|+.++++|++|+|||||+++|+|+.++..|.+ ..++ .+.+++|.+++++.....|+.+..+.+.
T Consensus 190 ~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i-~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~~~l~~~~~~ 268 (356)
T PRK01889 190 AWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAV-REDDSKGRHTTTHRELHPLPSGGLLIDTPGMRELQLWDAEDG 268 (356)
T ss_pred HHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeE-EECCCCCcchhhhccEEEecCCCeecCCCchhhhcccCchhh
Confidence 3567899999999999999999999999999999998 6543 5789999999999888888877654321
Q ss_pred -----HHHHHHHHHhcc
Q 001091 688 -----SFYEEVLEGCAL 699 (1159)
Q Consensus 688 -----~~y~~vl~ac~L 699 (1159)
..+.+..+.|..
T Consensus 269 l~~~f~~~~~~~~~c~f 285 (356)
T PRK01889 269 VEETFSDIEELAAQCRF 285 (356)
T ss_pred HHHhHHHHHHHHccCCC
Confidence 234445555554
No 499
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.96 E-value=2.8e-06 Score=103.41 Aligned_cols=139 Identities=22% Similarity=0.332 Sum_probs=78.4
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhCC--ccCCCCcEEEECCEEEEEe-cCCCCCCCcHHHHH-hcCCCCChHHHHH---
Q 001091 620 IMKGSKVAVCGSVGSGKSSLLSSILGE--IPRISGAAIKVHGKKAYVP-QSSWIQTGTIRENI-LFGKDMRQSFYEE--- 692 (1159)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLL~~llGe--~~~~~G~i~~v~g~iayv~-Q~pwi~~gTIreNI-lfG~~~d~~~y~~--- 692 (1159)
+++|..+.|.|++|||||||..-.+-+ .+.-+..+ ||+ +++ ...+++|- -||-++ +.+.+
T Consensus 18 lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~l--------yvs~eE~---~~~l~~~~~~~G~~~--~~~~~~g~ 84 (484)
T TIGR02655 18 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGV--------FVTFEES---PQDIIKNARSFGWDL--QKLVDEGK 84 (484)
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEE--------EEEEecC---HHHHHHHHHHcCCCH--HHHhhcCc
Confidence 789999999999999999999987543 22112222 222 111 12233333 233222 11110
Q ss_pred --------------HHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHH--HHHccCCCEEEEeCCCCCCCHHHH
Q 001091 693 --------------VLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA--RAVYSNSDVYIFDDPFSAVDAHTG 756 (1159)
Q Consensus 693 --------------vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLA--RAly~~a~I~LLDDp~SALD~~t~ 756 (1159)
+++...+++ ........+|+||+|||.|+ .|+..+++.+ ....
T Consensus 85 l~~~~~~~~~~~~~~~~~~~l~~-----------~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r 143 (484)
T TIGR02655 85 LFILDASPDPEGQDVVGGFDLSA-----------LIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVR 143 (484)
T ss_pred eEEEecCchhccccccccCCHHH-----------HHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHH
Confidence 011111111 11222347899999999999 6776665433 2333
Q ss_pred HHHHHHHHhhhc-CCcEEEEEccCccc--------c-c-ccCEEEEEe
Q 001091 757 THLFKQCLMGLL-SQKTVLYTTHQLEF--------L-D-AADLVLVMK 793 (1159)
Q Consensus 757 ~~if~~~i~g~l-~~kTvIlVTH~l~~--------l-~-~aD~Iivl~ 793 (1159)
+++. +.++.+. .|+|+|++||+.+. + . -||.|+.|+
T Consensus 144 ~~l~-~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 144 REIF-RLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHH-HHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4443 3444433 48999999998753 1 2 278899886
No 500
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=97.95 E-value=0.02 Score=65.05 Aligned_cols=199 Identities=16% Similarity=0.082 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 280 NAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYK 359 (1159)
Q Consensus 280 ~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~riR~~L~~~iy~ 359 (1159)
..++.++.+.++......-+.+.+.+++.+. ... +-.++.+++..+..++......|...+++.+.|.-|+..+.+
T Consensus 32 ll~l~l~~~~lsv~~~~~~g~~~~aL~~~d~-~~f---~~~l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~~ 107 (281)
T PF06472_consen 32 LLLLLLARVYLSVRINFWNGDFYNALQQKDL-QAF---WRLLLLFLLLAIASALLNSILKYLRQRLALRWREWLTRHLHD 107 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhcCH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666667778888876653 111 111112222233334444455567889999999999999999
Q ss_pred HHhcccCC------CCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHH
Q 001091 360 RSMAIKFA------GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSN 432 (1159)
Q Consensus 360 K~L~ls~~------~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l~~~i~~~~~~ 432 (1159)
+=++-... +......=.+++.|++++.+... ....+...++.++...+.||...|+...++.++..++...+.
T Consensus 108 ~yl~~~~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~~ 187 (281)
T PF06472_consen 108 RYLSNRTYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLIT 187 (281)
T ss_pred HHcCCchhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 87653321 11233455689999999877554 455666677778888888999888444445555556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHH
Q 001091 433 TPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR 482 (1159)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~ 482 (1159)
..+++...+...+..+...+--.....+.++-..|-+|+-|+.-.+++++
T Consensus 188 ~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~ 237 (281)
T PF06472_consen 188 HWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDR 237 (281)
T ss_pred HHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHH
Confidence 77777777666665555555555677889999999999998866665554
Done!