Query 001091
Match_columns 1159
No_of_seqs 555 out of 4059
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 10:35:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001091.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001091hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 6E-108 2E-112 1088.6 87.4 918 222-1154 2-1026(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 4.4E-86 1.5E-90 876.7 83.6 860 272-1150 45-975 (1284)
3 4a82_A Cystic fibrosis transme 100.0 2.9E-75 1E-79 718.4 61.5 544 267-820 6-575 (578)
4 3qf4_A ABC transporter, ATP-bi 100.0 9.8E-74 3.4E-78 705.1 67.3 544 264-822 12-579 (587)
5 3qf4_B Uncharacterized ABC tra 100.0 1.7E-74 5.8E-79 713.9 60.6 539 270-822 32-591 (598)
6 3b5x_A Lipid A export ATP-bind 100.0 5.2E-71 1.8E-75 681.5 72.8 539 267-821 17-579 (582)
7 3b60_A Lipid A export ATP-bind 100.0 3.9E-71 1.3E-75 682.6 68.3 537 269-821 19-579 (582)
8 2yl4_A ATP-binding cassette SU 100.0 1.3E-70 4.3E-75 679.8 66.5 544 268-821 12-583 (595)
9 4f4c_A Multidrug resistance pr 100.0 1.9E-71 6.6E-76 738.4 54.4 550 263-822 738-1317(1321)
10 3g5u_A MCG1178, multidrug resi 100.0 3.5E-61 1.2E-65 638.6 57.2 544 271-823 701-1272(1284)
11 3nh6_A ATP-binding cassette SU 100.0 2.2E-54 7.5E-59 488.1 23.1 262 552-823 14-291 (306)
12 2pze_A Cystic fibrosis transme 100.0 1.8E-47 6E-52 416.7 22.9 219 589-815 5-224 (229)
13 2cbz_A Multidrug resistance-as 100.0 4.6E-47 1.6E-51 415.4 23.9 224 590-821 3-229 (237)
14 2ff7_A Alpha-hemolysin translo 100.0 4.2E-45 1.4E-49 402.1 27.0 224 589-820 6-244 (247)
15 2ghi_A Transport protein; mult 100.0 7.2E-45 2.5E-49 403.3 26.5 224 589-821 16-254 (260)
16 1mv5_A LMRA, multidrug resista 100.0 3.2E-45 1.1E-49 402.6 19.2 219 591-819 2-236 (243)
17 2ixe_A Antigen peptide transpo 100.0 1.1E-43 3.7E-48 396.0 24.8 224 589-820 15-256 (271)
18 2bbs_A Cystic fibrosis transme 100.0 8.8E-44 3E-48 399.6 21.1 230 565-808 17-247 (290)
19 3gd7_A Fusion complex of cysti 100.0 2.1E-43 7.3E-48 410.5 23.0 219 588-815 17-249 (390)
20 3gfo_A Cobalt import ATP-bindi 100.0 3.7E-40 1.3E-44 367.4 23.3 200 589-808 6-233 (275)
21 3tif_A Uncharacterized ABC tra 100.0 2.1E-40 7.1E-45 362.2 19.2 201 591-807 2-233 (235)
22 3tui_C Methionine import ATP-b 100.0 3.8E-40 1.3E-44 377.9 20.6 210 588-814 22-259 (366)
23 3fvq_A Fe(3+) IONS import ATP- 100.0 1.1E-39 3.9E-44 374.0 22.9 206 590-815 4-235 (359)
24 1ji0_A ABC transporter; ATP bi 100.0 1.4E-39 4.9E-44 356.8 21.4 199 590-808 6-228 (240)
25 2yz2_A Putative ABC transporte 100.0 6.6E-39 2.2E-43 356.8 24.1 202 591-808 3-227 (266)
26 3rlf_A Maltose/maltodextrin im 100.0 2E-39 7E-44 374.2 20.3 205 590-815 3-230 (381)
27 2olj_A Amino acid ABC transpor 100.0 6.6E-39 2.3E-43 355.3 23.5 198 590-808 24-248 (263)
28 2pcj_A ABC transporter, lipopr 100.0 3.7E-39 1.3E-43 349.9 19.2 192 590-802 4-222 (224)
29 2nq2_C Hypothetical ABC transp 100.0 5.2E-39 1.8E-43 354.7 20.6 198 590-808 4-217 (253)
30 1b0u_A Histidine permease; ABC 100.0 6.5E-39 2.2E-43 355.9 21.5 198 590-808 6-242 (262)
31 1vpl_A ABC transporter, ATP-bi 100.0 1E-38 3.6E-43 352.5 22.1 199 589-808 14-235 (256)
32 1g6h_A High-affinity branched- 100.0 1E-38 3.4E-43 353.7 21.7 195 590-805 7-239 (257)
33 2yyz_A Sugar ABC transporter, 100.0 1.4E-38 4.9E-43 366.1 23.1 204 590-814 3-229 (359)
34 4g1u_C Hemin import ATP-bindin 100.0 1.1E-38 3.7E-43 354.6 21.0 199 589-808 10-237 (266)
35 1z47_A CYSA, putative ABC-tran 100.0 9.7E-39 3.3E-43 366.6 21.1 207 588-814 12-241 (355)
36 1oxx_K GLCV, glucose, ABC tran 100.0 1.7E-38 5.8E-43 365.7 21.3 204 590-814 3-236 (353)
37 2it1_A 362AA long hypothetical 100.0 1.3E-38 4.4E-43 366.8 19.9 204 590-814 3-229 (362)
38 1v43_A Sugar-binding transport 100.0 2.7E-38 9.1E-43 365.5 21.3 204 590-814 11-237 (372)
39 2onk_A Molybdate/tungstate ABC 100.0 1.6E-38 5.5E-43 347.9 17.3 194 591-808 2-216 (240)
40 3d31_A Sulfate/molybdate ABC t 100.0 1.7E-38 6E-43 364.2 18.2 198 591-810 2-219 (348)
41 1g29_1 MALK, maltose transport 100.0 5.8E-38 2E-42 363.4 20.8 204 590-814 3-235 (372)
42 2ihy_A ABC transporter, ATP-bi 100.0 3E-38 1E-42 353.2 17.7 199 589-808 20-252 (279)
43 2pjz_A Hypothetical protein ST 100.0 1E-37 3.6E-42 345.7 20.2 197 591-808 2-215 (263)
44 2qi9_C Vitamin B12 import ATP- 100.0 1.6E-37 5.6E-42 341.6 21.2 193 590-808 4-222 (249)
45 2d2e_A SUFC protein; ABC-ATPas 100.0 1.2E-37 4.3E-42 343.5 18.5 196 590-805 3-230 (250)
46 2zu0_C Probable ATP-dependent 100.0 8.7E-37 3E-41 339.8 21.3 199 589-808 19-254 (267)
47 1sgw_A Putative ABC transporte 100.0 2.5E-36 8.6E-41 324.5 14.9 187 589-798 9-211 (214)
48 2v9p_A Replication protein E1; 100.0 1.8E-35 6.1E-40 332.7 -16.2 231 527-819 40-273 (305)
49 3bk7_A ABC transporter ATP-bin 100.0 3.7E-31 1.3E-35 325.0 17.0 199 588-808 355-563 (607)
50 1yqt_A RNAse L inhibitor; ATP- 100.0 3.6E-31 1.2E-35 322.0 16.7 199 588-808 285-493 (538)
51 3ozx_A RNAse L inhibitor; ATP 100.0 3.1E-30 1E-34 313.0 18.3 198 589-808 268-477 (538)
52 3j16_B RLI1P; ribosome recycli 100.0 6.3E-30 2.2E-34 313.5 16.2 195 594-808 350-559 (608)
53 2iw3_A Elongation factor 3A; a 100.0 5.1E-30 1.7E-34 324.4 15.7 193 589-802 670-981 (986)
54 2iw3_A Elongation factor 3A; a 100.0 1.3E-27 4.6E-32 302.4 24.7 196 589-808 434-635 (986)
55 3bk7_A ABC transporter ATP-bin 100.0 4.2E-28 1.4E-32 297.9 17.0 184 590-795 83-304 (607)
56 1yqt_A RNAse L inhibitor; ATP- 99.9 5.1E-28 1.7E-32 294.3 15.3 183 591-795 21-234 (538)
57 3ux8_A Excinuclease ABC, A sub 99.9 5.3E-28 1.8E-32 303.0 14.0 193 611-808 31-298 (670)
58 3ux8_A Excinuclease ABC, A sub 99.9 3.7E-27 1.3E-31 295.4 17.5 126 672-808 504-640 (670)
59 3pih_A Uvrabc system protein A 99.9 1.9E-26 6.4E-31 292.0 21.8 125 673-808 767-902 (916)
60 3ozx_A RNAse L inhibitor; ATP 99.9 2.3E-27 7.7E-32 287.9 12.6 179 595-796 4-214 (538)
61 3j16_B RLI1P; ribosome recycli 99.9 2.8E-26 9.4E-31 281.3 15.6 184 595-798 82-300 (608)
62 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.4E-27 4.9E-32 284.1 -4.4 175 614-808 128-338 (460)
63 2vf7_A UVRA2, excinuclease ABC 99.9 7.4E-25 2.5E-29 275.4 16.8 94 714-808 724-827 (842)
64 2ygr_A Uvrabc system protein A 99.9 1.6E-24 5.4E-29 273.1 18.4 95 713-808 856-960 (993)
65 2r6f_A Excinuclease ABC subuni 99.9 1.1E-24 3.8E-29 273.5 16.5 95 713-808 838-942 (972)
66 4aby_A DNA repair protein RECN 99.9 2.4E-24 8.2E-29 255.0 12.8 79 721-800 296-380 (415)
67 1e69_A Chromosome segregation 99.9 1.1E-22 3.7E-27 232.7 13.8 186 617-805 19-310 (322)
68 3b85_A Phosphate starvation-in 99.9 1.7E-24 5.8E-29 231.7 -2.3 146 612-795 14-170 (208)
69 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 2.8E-22 9.5E-27 232.9 12.3 84 715-799 274-364 (365)
70 4gp7_A Metallophosphoesterase; 99.9 5.4E-23 1.8E-27 213.5 1.0 149 617-789 3-168 (171)
71 1ye8_A Protein THEP1, hypothet 99.8 8.6E-22 3E-26 205.7 1.2 140 625-799 2-159 (178)
72 1z6g_A Guanylate kinase; struc 99.8 4E-23 1.4E-27 223.0 -11.1 153 612-794 11-193 (218)
73 1tq4_A IIGP1, interferon-induc 99.8 1.1E-20 3.7E-25 221.1 -4.1 155 611-782 36-237 (413)
74 2pt7_A CAG-ALFA; ATPase, prote 99.7 8.2E-20 2.8E-24 209.1 -0.1 131 613-797 160-292 (330)
75 3aez_A Pantothenate kinase; tr 99.7 9.2E-21 3.2E-25 215.1 -8.0 116 620-753 87-209 (312)
76 2vf7_A UVRA2, excinuclease ABC 99.7 2.9E-18 9.8E-23 215.8 13.7 94 714-808 373-475 (842)
77 3qf4_B Uncharacterized ABC tra 99.7 8.6E-17 2.9E-21 198.7 26.1 254 897-1150 43-301 (598)
78 2o5v_A DNA replication and rep 99.7 8.5E-18 2.9E-22 193.7 14.6 81 720-806 265-354 (359)
79 3sop_A Neuronal-specific septi 99.7 1.9E-19 6.6E-24 200.3 -2.1 140 625-784 4-154 (270)
80 2dpy_A FLII, flagellum-specifi 99.7 2.3E-20 8E-25 220.9 -10.3 182 589-808 130-344 (438)
81 3b5x_A Lipid A export ATP-bind 99.7 1.8E-15 6E-20 186.5 31.5 253 899-1151 33-290 (582)
82 3qkt_A DNA double-strand break 99.7 5.5E-17 1.9E-21 186.8 16.6 79 718-797 246-333 (339)
83 3b60_A Lipid A export ATP-bind 99.7 1E-15 3.6E-20 188.5 28.9 254 898-1151 32-290 (582)
84 3qf4_A ABC transporter, ATP-bi 99.7 2.2E-16 7.4E-21 194.6 22.7 275 873-1149 7-286 (587)
85 3b9q_A Chloroplast SRP recepto 99.7 1.1E-18 3.8E-23 197.0 -1.0 158 617-797 94-284 (302)
86 1tf7_A KAIC; homohexamer, hexa 99.7 1.3E-16 4.4E-21 194.3 11.0 150 618-796 276-444 (525)
87 2yl4_A ATP-binding cassette SU 99.7 1.7E-14 5.8E-19 178.2 29.9 221 930-1150 65-286 (595)
88 2og2_A Putative signal recogni 99.7 7.9E-18 2.7E-22 193.6 -0.0 158 617-797 151-341 (359)
89 2o8b_B DNA mismatch repair pro 99.6 9E-17 3.1E-21 207.3 7.2 172 589-805 749-939 (1022)
90 2ewv_A Twitching motility prot 99.6 5.1E-19 1.7E-23 205.8 -13.6 167 613-782 127-353 (372)
91 3pih_A Uvrabc system protein A 99.6 6.3E-16 2.2E-20 196.1 12.5 155 645-808 390-560 (916)
92 3thx_A DNA mismatch repair pro 99.6 3.2E-16 1.1E-20 199.7 9.6 170 588-806 629-811 (934)
93 2i3b_A HCR-ntpase, human cance 99.6 9.6E-18 3.3E-22 176.6 -3.8 147 623-801 1-169 (189)
94 3asz_A Uridine kinase; cytidin 99.6 4E-18 1.4E-22 182.3 -7.7 139 620-780 3-161 (211)
95 2eyu_A Twitching motility prot 99.6 6.4E-17 2.2E-21 179.0 1.5 130 612-794 15-147 (261)
96 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 1.7E-15 5.8E-20 152.8 11.0 81 716-797 53-142 (148)
97 4a82_A Cystic fibrosis transme 99.6 1.4E-14 4.9E-19 178.2 20.8 219 932-1150 66-285 (578)
98 2f1r_A Molybdopterin-guanine d 99.6 3E-18 1E-22 177.4 -10.1 98 624-742 3-125 (171)
99 1znw_A Guanylate kinase, GMP k 99.6 2.5E-18 8.7E-23 183.7 -11.4 165 610-793 8-202 (207)
100 2r6f_A Excinuclease ABC subuni 99.6 1.7E-15 5.8E-20 190.7 11.0 134 670-808 449-600 (972)
101 2obl_A ESCN; ATPase, hydrolase 99.6 1.7E-16 5.7E-21 182.5 0.3 190 590-807 45-254 (347)
102 2ygr_A Uvrabc system protein A 99.6 3.9E-15 1.3E-19 188.2 12.6 134 669-808 465-617 (993)
103 2jeo_A Uridine-cytidine kinase 99.6 2.6E-16 9E-21 172.6 -0.5 162 610-808 11-187 (245)
104 1ewq_A DNA mismatch repair pro 99.6 1E-15 3.5E-20 191.9 4.6 146 589-786 549-704 (765)
105 4a74_A DNA repair and recombin 99.5 8.1E-16 2.8E-20 166.0 1.9 152 619-796 21-201 (231)
106 1cr0_A DNA primase/helicase; R 99.5 1.4E-14 4.7E-19 163.3 11.8 167 611-797 22-237 (296)
107 1w1w_A Structural maintenance 99.5 3.7E-14 1.3E-18 168.4 15.9 73 720-793 333-410 (430)
108 1odf_A YGR205W, hypothetical 3 99.5 7E-17 2.4E-21 181.3 -7.2 128 622-755 30-169 (290)
109 1pzn_A RAD51, DNA repair and r 99.5 1.6E-15 5.6E-20 174.9 1.5 160 612-806 118-313 (349)
110 1tf7_A KAIC; homohexamer, hexa 99.5 4.1E-16 1.4E-20 189.9 -3.8 154 611-796 25-211 (525)
111 3jvv_A Twitching mobility prot 99.5 8.7E-15 3E-19 168.7 4.5 145 595-795 93-246 (356)
112 3kta_B Chromosome segregation 99.5 4.8E-14 1.7E-18 145.9 9.5 79 718-797 62-146 (173)
113 3thx_B DNA mismatch repair pro 99.5 1.7E-14 5.8E-19 183.4 7.2 172 589-798 639-815 (918)
114 1lw7_A Transcriptional regulat 99.5 2.6E-16 8.8E-21 183.0 -10.5 133 615-748 159-329 (365)
115 2w0m_A SSO2452; RECA, SSPF, un 99.4 1.6E-13 5.6E-18 147.8 10.8 157 611-795 9-192 (235)
116 2gza_A Type IV secretion syste 99.4 1.4E-16 5E-21 184.6 -16.0 200 525-734 63-301 (361)
117 1lvg_A Guanylate kinase, GMP k 99.4 2.1E-16 7.2E-21 167.8 -15.1 148 621-794 2-173 (198)
118 1wb9_A DNA mismatch repair pro 99.4 4.1E-14 1.4E-18 178.5 3.0 168 589-800 576-750 (800)
119 1nlf_A Regulatory protein REPA 99.4 4.4E-13 1.5E-17 149.8 10.1 145 619-783 26-184 (279)
120 1pui_A ENGB, probable GTP-bind 99.4 1.1E-14 3.8E-19 154.8 -3.2 153 591-764 4-194 (210)
121 1rj9_A FTSY, signal recognitio 99.4 2.5E-13 8.4E-18 153.4 6.6 136 622-782 101-260 (304)
122 2qag_C Septin-7; cell cycle, c 99.4 4.4E-14 1.5E-18 165.8 -0.0 155 589-783 10-180 (418)
123 3szr_A Interferon-induced GTP- 99.4 1.3E-14 4.5E-19 179.0 -5.1 176 590-807 10-236 (608)
124 2ehv_A Hypothetical protein PH 99.4 2.1E-12 7.1E-17 141.0 11.9 159 619-794 26-207 (251)
125 3c8u_A Fructokinase; YP_612366 99.3 4.2E-15 1.5E-19 158.8 -10.1 115 620-748 19-140 (208)
126 2qnr_A Septin-2, protein NEDD5 99.3 5.5E-14 1.9E-18 158.9 -2.4 141 611-781 11-168 (301)
127 4ad8_A DNA repair protein RECN 99.3 1.1E-12 3.8E-17 159.4 7.0 76 719-795 395-473 (517)
128 1s96_A Guanylate kinase, GMP k 99.3 2.1E-13 7.3E-18 146.8 -1.9 135 617-808 10-160 (219)
129 2cvh_A DNA repair and recombin 99.3 1.3E-11 4.6E-16 131.9 12.1 141 619-795 16-185 (220)
130 2qag_B Septin-6, protein NEDD5 99.3 1.5E-12 5E-17 152.3 4.5 172 590-778 16-217 (427)
131 1zp6_A Hypothetical protein AT 99.2 4.5E-13 1.5E-17 140.4 -1.9 119 619-761 5-142 (191)
132 3auy_A DNA double-strand break 99.2 3.1E-11 1.1E-15 140.4 11.9 77 719-796 279-363 (371)
133 1nij_A Hypothetical protein YJ 99.1 3.2E-13 1.1E-17 153.8 -10.6 142 623-780 4-189 (318)
134 1n0w_A DNA repair protein RAD5 99.1 5.8E-11 2E-15 129.0 6.9 150 619-795 20-209 (243)
135 2bdt_A BH3686; alpha-beta prot 99.1 1.1E-13 3.7E-18 145.2 -16.4 154 623-806 2-182 (189)
136 2rcn_A Probable GTPase ENGC; Y 99.0 2.6E-11 8.8E-16 139.1 1.3 104 621-735 213-328 (358)
137 3ec2_A DNA replication protein 98.9 1.4E-09 4.8E-14 112.9 9.1 111 617-781 32-144 (180)
138 2kjq_A DNAA-related protein; s 98.9 2.1E-09 7E-14 108.5 8.5 88 622-779 35-124 (149)
139 2oap_1 GSPE-2, type II secreti 98.9 6.1E-12 2.1E-16 151.6 -12.1 158 612-784 248-454 (511)
140 2yhs_A FTSY, cell division pro 98.9 6.3E-10 2.2E-14 131.6 5.0 138 617-778 287-447 (503)
141 2bbw_A Adenylate kinase 4, AK4 98.9 4.1E-11 1.4E-15 131.2 -5.2 135 622-767 26-196 (246)
142 1p9r_A General secretion pathw 98.9 7.1E-11 2.4E-15 138.7 -4.2 109 621-744 165-315 (418)
143 1htw_A HI0065; nucleotide-bind 98.9 3E-10 1E-14 115.8 0.2 70 611-682 20-99 (158)
144 3lda_A DNA repair protein RAD5 98.8 2.1E-09 7.3E-14 125.5 6.9 149 619-795 174-363 (400)
145 1udx_A The GTP-binding protein 98.8 1.4E-09 4.9E-14 127.5 4.3 148 614-778 147-306 (416)
146 1sxj_E Activator 1 40 kDa subu 98.8 5.2E-09 1.8E-13 120.4 8.8 127 625-783 38-177 (354)
147 2qm8_A GTPase/ATPase; G protei 98.8 4.2E-10 1.4E-14 129.0 -0.9 143 612-762 43-254 (337)
148 2yv5_A YJEQ protein; hydrolase 98.8 1.3E-09 4.3E-14 123.2 2.4 102 618-733 160-300 (302)
149 3e70_C DPA, signal recognition 98.8 6.8E-09 2.3E-13 118.2 7.4 131 620-779 126-278 (328)
150 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 5.8E-10 2E-14 129.6 -10.0 157 619-805 16-210 (392)
151 1sq5_A Pantothenate kinase; P- 98.5 1.3E-09 4.6E-14 123.3 -7.1 58 589-657 36-115 (308)
152 2px0_A Flagellar biosynthesis 98.5 6.9E-08 2.3E-12 108.5 6.4 138 621-799 103-246 (296)
153 1vma_A Cell division protein F 98.5 8.5E-08 2.9E-12 108.1 6.6 106 618-762 99-207 (306)
154 2dr3_A UPF0273 protein PH0284; 98.5 4.7E-07 1.6E-11 98.0 11.7 157 619-794 19-196 (247)
155 1t9h_A YLOQ, probable GTPase E 98.5 1.9E-08 6.6E-13 113.1 0.6 61 618-680 168-248 (307)
156 1u0l_A Probable GTPase ENGC; p 98.5 4.6E-08 1.6E-12 110.4 3.4 88 618-707 164-289 (301)
157 2x8a_A Nuclear valosin-contain 98.5 3.1E-10 1E-14 126.4 -14.9 129 612-763 34-190 (274)
158 1cke_A CK, MSSA, protein (cyti 98.4 5.4E-09 1.8E-13 112.4 -5.3 115 622-748 4-150 (227)
159 3tr0_A Guanylate kinase, GMP k 98.3 1.1E-07 3.7E-12 100.4 0.3 60 617-681 1-74 (205)
160 1ls1_A Signal recognition part 98.3 2.1E-06 7.1E-11 96.5 10.8 108 617-759 94-202 (295)
161 2r6a_A DNAB helicase, replicat 98.3 1.8E-06 6.2E-11 102.9 10.3 166 613-797 192-401 (454)
162 2zr9_A Protein RECA, recombina 98.2 2E-06 6.7E-11 98.9 10.0 144 619-801 57-236 (349)
163 3a00_A Guanylate kinase, GMP k 98.2 3.5E-07 1.2E-11 95.4 2.5 117 623-746 1-169 (186)
164 1iy2_A ATP-dependent metallopr 98.2 5.1E-09 1.7E-13 116.7 -13.7 43 612-659 63-106 (278)
165 1ixz_A ATP-dependent metallopr 98.1 7.3E-09 2.5E-13 113.6 -13.5 43 612-659 39-82 (254)
166 3kta_A Chromosome segregation 98.1 8.6E-07 2.9E-11 91.7 2.8 109 615-728 18-161 (182)
167 3euj_A Chromosome partition pr 98.1 8.7E-07 3E-11 105.3 2.6 46 612-659 18-64 (483)
168 1oix_A RAS-related protein RAB 98.1 2.5E-06 8.6E-11 89.0 5.5 132 625-765 31-188 (191)
169 1in4_A RUVB, holliday junction 98.1 4.9E-08 1.7E-12 111.7 -8.2 67 612-680 32-123 (334)
170 2qt1_A Nicotinamide riboside k 98.0 9.7E-07 3.3E-11 93.5 1.4 50 619-682 17-66 (207)
171 3lnc_A Guanylate kinase, GMP k 98.0 8.9E-07 3.1E-11 95.5 1.1 35 613-647 16-52 (231)
172 3k1j_A LON protease, ATP-depen 98.0 8.8E-07 3E-11 109.4 1.0 145 611-761 47-223 (604)
173 1svm_A Large T antigen; AAA+ f 98.0 2.7E-08 9.1E-13 115.3 -11.9 128 612-749 157-312 (377)
174 2ce7_A Cell division protein F 98.0 9.3E-06 3.2E-10 96.7 9.0 113 613-784 40-168 (476)
175 4e22_A Cytidylate kinase; P-lo 97.9 6.4E-07 2.2E-11 98.2 -2.2 80 621-707 25-135 (252)
176 3t34_A Dynamin-related protein 97.9 1.3E-05 4.3E-10 92.6 7.6 40 612-654 25-67 (360)
177 1kgd_A CASK, peripheral plasma 97.9 1.2E-06 4.1E-11 90.9 -1.0 33 622-654 4-37 (180)
178 4a1f_A DNAB helicase, replicat 97.9 1.6E-05 5.5E-10 90.5 8.1 99 619-752 42-141 (338)
179 3ney_A 55 kDa erythrocyte memb 97.8 2.2E-06 7.4E-11 90.2 -0.5 74 617-696 13-109 (197)
180 2xau_A PRE-mRNA-splicing facto 97.8 5.5E-06 1.9E-10 104.9 3.0 142 620-783 106-255 (773)
181 2f9l_A RAB11B, member RAS onco 97.8 1.3E-05 4.5E-10 83.9 5.2 35 729-765 130-164 (199)
182 2e87_A Hypothetical protein PH 97.8 3.7E-05 1.3E-09 88.6 9.3 123 624-782 168-292 (357)
183 2ius_A DNA translocase FTSK; n 97.8 3.1E-06 1.1E-10 101.3 -0.6 152 617-781 161-343 (512)
184 2qtf_A Protein HFLX, GTP-bindi 97.7 2.5E-05 8.7E-10 90.1 5.9 132 625-763 181-348 (364)
185 3tqc_A Pantothenate kinase; bi 97.7 1.4E-06 4.7E-11 98.7 -5.0 121 613-753 75-211 (321)
186 2dy1_A Elongation factor G; tr 97.7 1.2E-05 4.2E-10 100.1 2.7 118 617-783 3-139 (665)
187 1jjv_A Dephospho-COA kinase; P 97.6 3.1E-05 1.1E-09 81.6 4.7 125 625-793 4-131 (206)
188 3hr8_A Protein RECA; alpha and 97.6 0.00039 1.3E-08 79.7 13.9 35 620-654 58-92 (356)
189 3nwj_A ATSK2; P loop, shikimat 97.6 7E-06 2.4E-10 89.8 -0.6 51 590-647 17-72 (250)
190 2j41_A Guanylate kinase; GMP, 97.6 2.6E-05 8.8E-10 82.0 3.2 35 618-652 1-35 (207)
191 3bh0_A DNAB-like replicative h 97.6 0.00011 3.8E-09 83.1 8.3 104 617-752 62-165 (315)
192 3vaa_A Shikimate kinase, SK; s 97.5 2.6E-05 8.7E-10 82.0 2.5 39 609-647 10-49 (199)
193 3uie_A Adenylyl-sulfate kinase 97.5 3.3E-05 1.1E-09 81.2 2.9 41 613-654 14-55 (200)
194 1qhl_A Protein (cell division 97.4 4.8E-06 1.6E-10 89.6 -4.7 42 617-660 22-63 (227)
195 2dhr_A FTSH; AAA+ protein, hex 97.4 3.1E-06 1.1E-10 101.4 -7.0 43 612-659 54-97 (499)
196 2z43_A DNA repair and recombin 97.3 0.00046 1.6E-08 78.3 9.8 108 619-753 103-218 (324)
197 2eyu_A Twitching motility prot 97.3 3.3E-07 1.1E-11 101.1 -16.8 113 667-781 83-241 (261)
198 3b9p_A CG5977-PA, isoform A; A 97.3 0.00099 3.4E-08 74.1 11.4 116 622-793 53-187 (297)
199 1fnn_A CDC6P, cell division co 97.3 0.0011 3.6E-08 76.5 11.8 123 622-782 41-171 (389)
200 1v5w_A DMC1, meiotic recombina 97.2 0.0012 4.2E-08 75.4 12.1 108 619-753 118-234 (343)
201 4eun_A Thermoresistant glucoki 97.2 0.00011 3.8E-09 77.1 3.0 38 617-659 23-60 (200)
202 3tau_A Guanylate kinase, GMP k 97.1 0.00019 6.5E-09 76.0 3.6 29 621-649 6-34 (208)
203 3ice_A Transcription terminati 97.1 0.00012 4.2E-09 83.6 1.4 54 589-649 132-200 (422)
204 3lxx_A GTPase IMAP family memb 97.1 0.0022 7.4E-08 69.1 11.2 29 625-653 31-59 (239)
205 1rz3_A Hypothetical protein rb 97.0 0.00021 7.2E-09 75.2 2.8 36 619-654 18-53 (201)
206 1zu4_A FTSY; GTPase, signal re 97.0 0.00095 3.2E-08 75.5 7.8 38 617-654 99-136 (320)
207 2vp4_A Deoxynucleoside kinase; 97.0 0.00033 1.1E-08 75.3 3.7 37 617-658 14-50 (230)
208 3kl4_A SRP54, signal recogniti 96.9 0.0026 9E-08 74.6 10.6 33 622-654 96-128 (433)
209 2z4s_A Chromosomal replication 96.9 0.0014 4.8E-08 77.6 8.0 68 735-803 190-263 (440)
210 3m6a_A ATP-dependent protease 96.8 0.00032 1.1E-08 85.4 2.3 41 613-654 98-139 (543)
211 1ega_A Protein (GTP-binding pr 96.8 0.001 3.6E-08 74.6 6.0 47 622-668 7-55 (301)
212 2qby_A CDC6 homolog 1, cell di 96.8 0.0018 6.3E-08 74.2 8.2 32 621-652 43-74 (386)
213 1knq_A Gluconate kinase; ALFA/ 96.7 0.00055 1.9E-08 69.9 2.9 33 621-658 6-38 (175)
214 2w58_A DNAI, primosome compone 96.7 0.0015 5.2E-08 68.2 6.0 31 624-654 55-85 (202)
215 3cr8_A Sulfate adenylyltranfer 96.7 0.00045 1.5E-08 83.8 1.8 42 618-659 364-406 (552)
216 2q6t_A DNAB replication FORK h 96.7 0.0057 1.9E-07 72.4 11.2 98 619-750 196-294 (444)
217 1l8q_A Chromosomal replication 96.6 0.0023 8E-08 72.2 7.2 32 622-653 36-67 (324)
218 2ffh_A Protein (FFH); SRP54, s 96.5 0.0071 2.4E-07 70.8 10.7 139 617-778 94-246 (425)
219 4dcu_A GTP-binding protein ENG 96.5 0.0029 9.8E-08 75.3 7.1 118 625-784 25-145 (456)
220 1ypw_A Transitional endoplasmi 96.5 0.0044 1.5E-07 78.9 9.1 32 617-648 232-263 (806)
221 3bos_A Putative DNA replicatio 96.5 0.003 1E-07 67.2 6.6 30 621-650 50-79 (242)
222 1u94_A RECA protein, recombina 96.5 0.0091 3.1E-07 68.4 10.9 41 620-667 60-100 (356)
223 1kag_A SKI, shikimate kinase I 96.5 0.00097 3.3E-08 67.7 2.5 27 622-648 3-29 (173)
224 3lxw_A GTPase IMAP family memb 96.5 0.0097 3.3E-07 64.6 10.5 60 722-782 86-151 (247)
225 2www_A Methylmalonic aciduria 96.4 0.0014 4.8E-08 75.1 3.8 33 622-654 73-105 (349)
226 3bgw_A DNAB-like replicative h 96.4 0.0053 1.8E-07 72.6 8.6 97 619-748 193-290 (444)
227 1f2t_A RAD50 ABC-ATPase; DNA d 96.3 0.0018 6.2E-08 64.7 3.4 27 617-644 18-44 (149)
228 3cf0_A Transitional endoplasmi 96.3 0.0066 2.2E-07 67.9 8.3 31 618-648 44-74 (301)
229 2pez_A Bifunctional 3'-phospho 96.3 0.0013 4.3E-08 67.5 2.0 31 621-652 3-33 (179)
230 2p67_A LAO/AO transport system 96.2 0.0014 4.7E-08 74.9 1.8 43 612-654 44-87 (341)
231 4eaq_A DTMP kinase, thymidylat 96.2 0.0021 7.3E-08 69.0 3.2 41 613-654 12-56 (229)
232 4fcw_A Chaperone protein CLPB; 96.1 0.0091 3.1E-07 66.6 8.2 32 623-654 47-78 (311)
233 3h4m_A Proteasome-activating n 96.1 0.013 4.6E-07 64.4 9.2 28 620-647 48-75 (285)
234 1m7g_A Adenylylsulfate kinase; 96.0 0.0014 4.9E-08 69.2 0.9 36 617-652 19-54 (211)
235 3llm_A ATP-dependent RNA helic 96.0 0.0065 2.2E-07 65.3 6.0 123 620-763 73-202 (235)
236 2qor_A Guanylate kinase; phosp 95.9 0.0026 8.8E-08 66.8 2.4 30 619-648 8-37 (204)
237 2vhj_A Ntpase P4, P4; non- hyd 95.9 0.0054 1.8E-07 68.8 4.9 28 619-646 119-146 (331)
238 2gj8_A MNME, tRNA modification 95.9 0.0037 1.3E-07 63.5 3.4 27 621-647 2-28 (172)
239 2yvu_A Probable adenylyl-sulfa 95.9 0.0026 9E-08 65.6 2.2 36 619-654 9-44 (186)
240 2qgz_A Helicase loader, putati 95.8 0.0033 1.1E-07 70.7 2.6 26 623-648 152-177 (308)
241 2i1q_A DNA repair and recombin 95.7 0.016 5.4E-07 65.4 8.1 28 619-646 94-121 (322)
242 1xwi_A SKD1 protein; VPS4B, AA 95.6 0.043 1.5E-06 61.9 11.3 27 621-647 43-69 (322)
243 1f6b_A SAR1; gtpases, N-termin 95.6 0.0033 1.1E-07 65.5 1.4 34 611-645 13-47 (198)
244 1y63_A LMAJ004144AAA protein; 95.5 0.0059 2E-07 62.9 3.3 30 617-646 4-33 (184)
245 1xp8_A RECA protein, recombina 95.5 0.045 1.5E-06 62.9 10.8 41 620-667 71-111 (366)
246 1njg_A DNA polymerase III subu 95.4 0.026 8.8E-07 59.5 7.9 25 625-649 47-71 (250)
247 3d8b_A Fidgetin-like protein 1 95.4 0.032 1.1E-06 63.9 9.3 27 621-647 115-141 (357)
248 2v1u_A Cell division control p 95.4 0.013 4.6E-07 67.0 5.8 29 621-649 42-70 (387)
249 3qks_A DNA double-strand break 95.3 0.0081 2.8E-07 63.2 3.4 27 617-644 18-44 (203)
250 2ohf_A Protein OLA1, GTP-bindi 95.2 0.0074 2.5E-07 69.9 3.0 28 619-646 18-45 (396)
251 1m2o_B GTP-binding protein SAR 95.2 0.01 3.5E-07 61.2 3.6 32 613-645 13-45 (190)
252 1np6_A Molybdopterin-guanine d 95.2 0.0071 2.4E-07 62.1 2.3 29 623-651 6-34 (174)
253 1ly1_A Polynucleotide kinase; 95.1 0.045 1.5E-06 55.4 8.3 22 624-645 3-24 (181)
254 1mky_A Probable GTP-binding pr 95.1 0.013 4.4E-07 69.3 4.7 25 624-648 181-205 (439)
255 2zej_A Dardarin, leucine-rich 95.1 0.01 3.6E-07 60.7 3.3 28 625-652 4-31 (184)
256 2wji_A Ferrous iron transport 94.9 0.016 5.4E-07 58.2 4.0 25 624-648 4-28 (165)
257 1qhx_A CPT, protein (chloramph 94.8 0.012 4.1E-07 59.8 3.0 27 622-648 2-28 (178)
258 3t61_A Gluconokinase; PSI-biol 94.7 0.01 3.4E-07 62.0 1.9 25 623-647 18-42 (202)
259 3cm0_A Adenylate kinase; ATP-b 94.7 0.014 4.7E-07 59.8 2.9 27 621-647 2-28 (186)
260 2wjg_A FEOB, ferrous iron tran 94.6 0.024 8.1E-07 57.8 4.7 23 624-646 8-30 (188)
261 2if2_A Dephospho-COA kinase; a 94.6 0.014 4.7E-07 61.0 2.6 21 625-645 3-23 (204)
262 1ex7_A Guanylate kinase; subst 94.5 0.013 4.4E-07 60.8 2.4 24 625-648 3-26 (186)
263 1gvn_B Zeta; postsegregational 94.5 0.02 6.9E-07 63.6 4.1 36 621-659 31-66 (287)
264 2p5t_B PEZT; postsegregational 94.4 0.015 5.1E-07 63.2 2.7 30 619-648 28-57 (253)
265 3kb2_A SPBC2 prophage-derived 94.3 0.015 5.1E-07 58.5 2.3 23 625-647 3-25 (173)
266 3syl_A Protein CBBX; photosynt 94.3 0.13 4.4E-06 57.1 10.0 28 622-649 66-93 (309)
267 2rhm_A Putative kinase; P-loop 94.3 0.021 7E-07 58.7 3.2 27 621-647 3-29 (193)
268 2qz4_A Paraplegin; AAA+, SPG7, 94.3 0.17 5.9E-06 54.5 10.7 26 622-647 38-63 (262)
269 1kht_A Adenylate kinase; phosp 94.2 0.023 7.7E-07 58.2 3.3 27 622-648 2-28 (192)
270 1j8m_F SRP54, signal recogniti 94.2 0.016 5.4E-07 64.8 2.3 32 623-654 98-129 (297)
271 2v54_A DTMP kinase, thymidylat 94.1 0.024 8.1E-07 58.9 3.3 27 621-647 2-28 (204)
272 2zan_A Vacuolar protein sortin 94.1 0.13 4.6E-06 60.6 10.2 27 621-647 165-191 (444)
273 4ad8_A DNA repair protein RECN 94.0 0.011 3.7E-07 71.4 0.5 30 614-644 51-81 (517)
274 3n70_A Transport activator; si 93.9 0.092 3.1E-06 51.7 7.1 33 622-654 23-55 (145)
275 1lv7_A FTSH; alpha/beta domain 93.9 0.017 5.7E-07 62.8 1.7 30 617-648 41-70 (257)
276 4b4t_L 26S protease subunit RP 93.9 0.16 5.6E-06 59.5 10.2 30 619-648 211-240 (437)
277 3lw7_A Adenylate kinase relate 93.9 0.027 9.2E-07 56.5 3.1 20 624-643 2-21 (179)
278 2wwf_A Thymidilate kinase, put 93.8 0.03 1E-06 58.5 3.3 28 621-648 8-35 (212)
279 2orv_A Thymidine kinase; TP4A 93.8 0.085 2.9E-06 56.3 6.8 51 737-793 89-150 (234)
280 1q3t_A Cytidylate kinase; nucl 93.8 0.024 8.1E-07 60.9 2.5 28 620-647 13-40 (236)
281 3iij_A Coilin-interacting nucl 93.8 0.022 7.4E-07 58.2 2.1 27 621-647 9-35 (180)
282 3io5_A Recombination and repai 93.7 0.075 2.6E-06 59.4 6.5 41 620-667 26-67 (333)
283 1nn5_A Similar to deoxythymidy 93.7 0.031 1.1E-06 58.4 3.3 29 620-648 6-34 (215)
284 2erx_A GTP-binding protein DI- 93.6 0.043 1.5E-06 54.5 4.1 22 625-646 5-26 (172)
285 3r20_A Cytidylate kinase; stru 93.6 0.023 8E-07 61.0 2.1 26 622-647 8-33 (233)
286 2qp9_X Vacuolar protein sortin 93.6 0.13 4.6E-06 58.7 8.7 26 622-647 83-108 (355)
287 2chg_A Replication factor C sm 93.6 0.2 6.9E-06 51.7 9.4 24 625-648 40-63 (226)
288 3trf_A Shikimate kinase, SK; a 93.6 0.034 1.2E-06 56.8 3.3 26 622-647 4-29 (185)
289 3dm5_A SRP54, signal recogniti 93.6 0.37 1.3E-05 56.5 12.4 40 622-668 99-138 (443)
290 2plr_A DTMP kinase, probable t 93.6 0.034 1.2E-06 57.9 3.3 28 622-649 3-30 (213)
291 1gtv_A TMK, thymidylate kinase 93.6 0.009 3.1E-07 62.7 -1.2 26 625-650 2-27 (214)
292 2ewv_A Twitching motility prot 93.5 0.024 8.2E-07 65.4 2.1 64 714-790 191-254 (372)
293 2qby_B CDC6 homolog 3, cell di 93.5 0.057 2E-06 61.8 5.3 27 622-648 44-70 (384)
294 1xjc_A MOBB protein homolog; s 93.4 0.032 1.1E-06 56.9 2.7 26 624-649 5-30 (169)
295 1z2a_A RAS-related protein RAB 93.4 0.034 1.2E-06 55.1 2.9 23 625-647 7-29 (168)
296 1uf9_A TT1252 protein; P-loop, 93.4 0.035 1.2E-06 57.4 3.1 25 622-646 7-31 (203)
297 3q72_A GTP-binding protein RAD 93.4 0.037 1.3E-06 54.9 3.1 24 625-648 4-27 (166)
298 2ze6_A Isopentenyl transferase 93.4 0.028 9.4E-07 61.2 2.2 24 624-647 2-25 (253)
299 1lw7_A Transcriptional regulat 93.3 0.0013 4.5E-08 75.8 -8.8 59 720-779 258-328 (365)
300 2c95_A Adenylate kinase 1; tra 93.3 0.037 1.3E-06 56.9 3.1 27 621-647 7-33 (196)
301 1vht_A Dephospho-COA kinase; s 93.3 0.041 1.4E-06 58.0 3.4 24 622-645 3-26 (218)
302 2r8r_A Sensor protein; KDPD, P 93.3 0.057 2E-06 57.5 4.4 31 621-652 3-34 (228)
303 2jaq_A Deoxyguanosine kinase; 93.2 0.031 1.1E-06 57.8 2.3 24 625-648 2-25 (205)
304 4b4t_K 26S protease regulatory 93.2 0.19 6.7E-06 58.7 9.2 29 620-648 203-231 (428)
305 2nzj_A GTP-binding protein REM 93.2 0.045 1.5E-06 54.7 3.4 23 625-647 6-28 (175)
306 2ce2_X GTPase HRAS; signaling 93.2 0.038 1.3E-06 54.4 2.8 23 625-647 5-27 (166)
307 1kao_A RAP2A; GTP-binding prot 93.1 0.039 1.3E-06 54.4 2.8 22 625-646 5-26 (167)
308 1svi_A GTP-binding protein YSX 93.1 0.043 1.5E-06 56.2 3.2 25 623-647 23-47 (195)
309 2lkc_A Translation initiation 93.1 0.052 1.8E-06 54.5 3.7 26 622-647 7-32 (178)
310 3ihw_A Centg3; RAS, centaurin, 93.1 0.062 2.1E-06 54.9 4.4 22 625-646 22-43 (184)
311 2vli_A Antibiotic resistance p 93.1 0.036 1.2E-06 56.4 2.5 27 621-647 3-29 (183)
312 1u8z_A RAS-related protein RAL 93.1 0.042 1.4E-06 54.3 2.9 22 625-646 6-27 (168)
313 1z0j_A RAB-22, RAS-related pro 93.1 0.042 1.4E-06 54.6 2.9 23 625-647 8-30 (170)
314 1jal_A YCHF protein; nucleotid 93.1 0.057 1.9E-06 61.8 4.3 24 623-646 2-25 (363)
315 3tw8_B RAS-related protein RAB 93.1 0.046 1.6E-06 54.9 3.3 23 625-647 11-33 (181)
316 2dyk_A GTP-binding protein; GT 93.0 0.042 1.5E-06 54.1 2.9 23 625-647 3-25 (161)
317 1q57_A DNA primase/helicase; d 93.0 0.49 1.7E-05 56.6 12.7 42 619-666 238-279 (503)
318 1g16_A RAS-related protein SEC 93.0 0.04 1.4E-06 54.7 2.7 23 625-647 5-27 (170)
319 2ged_A SR-beta, signal recogni 93.0 0.042 1.4E-06 56.2 2.9 25 623-647 48-72 (193)
320 1ek0_A Protein (GTP-binding pr 93.0 0.044 1.5E-06 54.3 2.9 23 625-647 5-27 (170)
321 1ypw_A Transitional endoplasmi 93.0 0.025 8.5E-07 71.9 1.3 32 617-648 505-536 (806)
322 3pqc_A Probable GTP-binding pr 93.0 0.047 1.6E-06 55.7 3.2 23 625-647 25-47 (195)
323 1z08_A RAS-related protein RAB 93.0 0.045 1.5E-06 54.5 2.9 23 625-647 8-30 (170)
324 2j9r_A Thymidine kinase; TK1, 93.0 0.12 4E-06 54.7 6.2 28 621-648 26-53 (214)
325 3q85_A GTP-binding protein REM 92.9 0.05 1.7E-06 54.1 3.3 23 625-647 4-26 (169)
326 1sxj_D Activator 1 41 kDa subu 92.9 0.075 2.6E-06 60.1 5.1 23 626-648 61-83 (353)
327 1ky3_A GTP-binding protein YPT 92.9 0.046 1.6E-06 54.9 2.9 23 625-647 10-32 (182)
328 1c1y_A RAS-related protein RAP 92.8 0.046 1.6E-06 54.1 2.8 22 625-646 5-26 (167)
329 4b4t_M 26S protease regulatory 92.8 0.19 6.5E-06 58.8 8.4 30 619-648 211-240 (434)
330 2ga8_A Hypothetical 39.9 kDa p 92.8 0.015 5.1E-07 66.1 -0.9 37 612-648 10-49 (359)
331 1tev_A UMP-CMP kinase; ploop, 92.8 0.053 1.8E-06 55.5 3.3 26 622-647 2-27 (196)
332 1wms_A RAB-9, RAB9, RAS-relate 92.8 0.049 1.7E-06 54.6 2.9 23 625-647 9-31 (177)
333 4ag6_A VIRB4 ATPase, type IV s 92.8 0.046 1.6E-06 63.4 3.0 34 622-655 34-67 (392)
334 2bwj_A Adenylate kinase 5; pho 92.8 0.041 1.4E-06 56.7 2.4 28 620-647 9-36 (199)
335 2fn4_A P23, RAS-related protei 92.7 0.048 1.6E-06 54.8 2.8 22 625-646 11-32 (181)
336 3k53_A Ferrous iron transport 92.7 0.051 1.8E-06 59.5 3.1 24 625-648 5-28 (271)
337 3clv_A RAB5 protein, putative; 92.6 0.051 1.7E-06 55.6 2.9 24 624-647 8-31 (208)
338 3t5d_A Septin-7; GTP-binding p 92.6 0.052 1.8E-06 59.6 3.1 23 625-647 10-32 (274)
339 3cmu_A Protein RECA, recombina 92.6 0.3 1E-05 66.8 11.0 40 611-650 1066-1108(2050)
340 3uk6_A RUVB-like 2; hexameric 92.5 0.36 1.2E-05 54.9 10.1 28 622-649 69-96 (368)
341 1aky_A Adenylate kinase; ATP:A 92.5 0.061 2.1E-06 56.8 3.4 27 621-647 2-28 (220)
342 2cxx_A Probable GTP-binding pr 92.5 0.07 2.4E-06 54.1 3.8 23 625-647 3-25 (190)
343 1r2q_A RAS-related protein RAB 92.5 0.054 1.8E-06 53.7 2.8 22 625-646 8-29 (170)
344 4b4t_H 26S protease regulatory 92.4 0.26 8.8E-06 57.9 8.7 29 620-648 240-268 (467)
345 2y8e_A RAB-protein 6, GH09086P 92.4 0.056 1.9E-06 54.1 2.8 22 625-646 16-37 (179)
346 1nks_A Adenylate kinase; therm 92.4 0.059 2E-06 55.1 3.0 24 625-648 3-26 (194)
347 1uj2_A Uridine-cytidine kinase 92.4 0.064 2.2E-06 58.1 3.4 27 621-647 20-46 (252)
348 2cdn_A Adenylate kinase; phosp 92.4 0.068 2.3E-06 55.5 3.4 27 621-647 18-44 (201)
349 3auy_A DNA double-strand break 92.4 0.056 1.9E-06 62.2 3.1 27 617-644 20-46 (371)
350 1zd8_A GTP:AMP phosphotransfer 92.3 0.053 1.8E-06 57.6 2.6 27 621-647 5-31 (227)
351 3cmu_A Protein RECA, recombina 92.3 0.38 1.3E-05 65.9 11.3 35 620-654 1424-1458(2050)
352 4dsu_A GTPase KRAS, isoform 2B 92.3 0.06 2.1E-06 54.5 2.9 23 625-647 6-28 (189)
353 3a8t_A Adenylate isopentenyltr 92.3 0.074 2.5E-06 60.1 3.9 33 621-656 38-70 (339)
354 1fzq_A ADP-ribosylation factor 92.3 0.064 2.2E-06 54.6 3.1 24 623-646 16-39 (181)
355 2oil_A CATX-8, RAS-related pro 92.3 0.061 2.1E-06 55.0 2.9 23 625-647 27-49 (193)
356 4b4t_J 26S protease regulatory 92.2 0.29 9.9E-06 56.6 8.7 29 618-648 179-207 (405)
357 3bc1_A RAS-related protein RAB 92.2 0.061 2.1E-06 54.6 2.8 22 625-646 13-34 (195)
358 1via_A Shikimate kinase; struc 92.2 0.047 1.6E-06 55.4 2.0 23 625-647 6-28 (175)
359 2hxs_A RAB-26, RAS-related pro 92.2 0.068 2.3E-06 53.6 3.1 22 625-646 8-29 (178)
360 1wf3_A GTP-binding protein; GT 92.2 0.068 2.3E-06 59.7 3.4 22 625-646 9-30 (301)
361 1jwy_B Dynamin A GTPase domain 92.2 0.063 2.2E-06 59.9 3.2 23 625-647 26-48 (315)
362 1r8s_A ADP-ribosylation factor 92.2 0.063 2.2E-06 53.0 2.8 22 625-646 2-23 (164)
363 1ukz_A Uridylate kinase; trans 92.1 0.06 2.1E-06 55.9 2.7 26 622-647 14-39 (203)
364 3iev_A GTP-binding protein ERA 92.1 0.069 2.4E-06 59.8 3.4 23 625-647 12-34 (308)
365 2qag_A Septin-2, protein NEDD5 92.1 0.06 2E-06 61.8 2.9 50 589-652 16-66 (361)
366 1sxj_C Activator 1 40 kDa subu 92.1 0.035 1.2E-06 62.9 0.9 42 612-653 32-76 (340)
367 1z0f_A RAB14, member RAS oncog 92.1 0.067 2.3E-06 53.6 2.9 23 625-647 17-39 (179)
368 2g6b_A RAS-related protein RAB 92.1 0.067 2.3E-06 53.7 2.9 23 625-647 12-34 (180)
369 2qmh_A HPR kinase/phosphorylas 92.1 0.11 3.7E-06 54.2 4.4 36 612-647 23-58 (205)
370 2efe_B Small GTP-binding prote 92.0 0.069 2.4E-06 53.7 2.9 23 625-647 14-36 (181)
371 2bme_A RAB4A, RAS-related prot 91.9 0.068 2.3E-06 54.1 2.8 23 625-647 12-34 (186)
372 1upt_A ARL1, ADP-ribosylation 91.9 0.075 2.6E-06 52.8 3.1 25 622-646 6-30 (171)
373 2a9k_A RAS-related protein RAL 91.9 0.071 2.4E-06 53.8 2.9 22 625-646 20-41 (187)
374 2aka_B Dynamin-1; fusion prote 91.9 0.073 2.5E-06 58.8 3.2 23 625-647 28-50 (299)
375 2xtp_A GTPase IMAP family memb 91.9 0.075 2.6E-06 57.6 3.3 24 624-647 23-46 (260)
376 4bas_A ADP-ribosylation factor 91.9 0.098 3.4E-06 53.5 4.0 25 623-647 17-41 (199)
377 3t1o_A Gliding protein MGLA; G 91.9 0.075 2.6E-06 54.2 3.1 25 625-649 16-40 (198)
378 4b4t_I 26S protease regulatory 91.9 0.33 1.1E-05 56.4 8.8 29 620-648 213-241 (437)
379 3con_A GTPase NRAS; structural 91.9 0.069 2.4E-06 54.4 2.8 23 625-647 23-45 (190)
380 1moz_A ARL1, ADP-ribosylation 91.9 0.066 2.2E-06 54.1 2.6 24 622-645 17-40 (183)
381 3iby_A Ferrous iron transport 91.9 0.076 2.6E-06 57.8 3.2 23 625-647 3-25 (256)
382 2z0h_A DTMP kinase, thymidylat 91.8 0.076 2.6E-06 54.6 3.1 24 625-648 2-25 (197)
383 3cmw_A Protein RECA, recombina 91.8 0.27 9.3E-06 66.4 9.0 125 620-781 1079-1219(1706)
384 3a4m_A L-seryl-tRNA(SEC) kinas 91.8 0.081 2.8E-06 57.7 3.3 28 621-648 2-29 (260)
385 3cmw_A Protein RECA, recombina 91.8 0.55 1.9E-05 63.5 11.8 42 620-668 380-421 (1706)
386 3t5g_A GTP-binding protein RHE 91.7 0.1 3.6E-06 52.5 3.9 21 625-645 8-28 (181)
387 2bov_A RAla, RAS-related prote 91.7 0.078 2.7E-06 54.6 2.9 23 625-647 16-38 (206)
388 1vg8_A RAS-related protein RAB 91.7 0.078 2.7E-06 54.8 2.9 23 625-647 10-32 (207)
389 3b1v_A Ferrous iron uptake tra 91.6 0.1 3.4E-06 57.4 3.9 24 624-647 4-27 (272)
390 2gf9_A RAS-related protein RAB 91.6 0.081 2.8E-06 54.0 2.9 23 625-647 24-46 (189)
391 1qf9_A UMP/CMP kinase, protein 91.6 0.083 2.8E-06 53.9 3.0 25 623-647 6-30 (194)
392 3def_A T7I23.11 protein; chlor 91.6 0.085 2.9E-06 57.5 3.2 23 625-647 38-60 (262)
393 2fg5_A RAB-22B, RAS-related pr 91.6 0.078 2.7E-06 54.4 2.8 23 625-647 25-47 (192)
394 4dhe_A Probable GTP-binding pr 91.5 0.048 1.7E-06 57.2 1.2 24 624-647 30-53 (223)
395 1zbd_A Rabphilin-3A; G protein 91.5 0.094 3.2E-06 54.1 3.4 23 625-647 10-32 (203)
396 1a7j_A Phosphoribulokinase; tr 91.5 0.06 2E-06 59.8 1.9 42 622-670 4-45 (290)
397 2qu8_A Putative nucleolar GTP- 91.5 0.092 3.1E-06 55.6 3.3 23 624-646 30-52 (228)
398 2il1_A RAB12; G-protein, GDP, 91.5 0.088 3E-06 54.0 3.1 23 625-647 28-50 (192)
399 1zak_A Adenylate kinase; ATP:A 91.5 0.079 2.7E-06 56.0 2.7 26 622-647 4-29 (222)
400 3cbq_A GTP-binding protein REM 91.5 0.081 2.8E-06 54.7 2.8 22 625-646 25-46 (195)
401 3kkq_A RAS-related protein M-R 91.4 0.1 3.5E-06 52.7 3.5 22 625-646 20-41 (183)
402 1ksh_A ARF-like protein 2; sma 91.4 0.1 3.5E-06 52.9 3.5 26 622-647 17-42 (186)
403 3tkl_A RAS-related protein RAB 91.4 0.1 3.5E-06 53.3 3.5 23 625-647 18-40 (196)
404 1z06_A RAS-related protein RAB 91.4 0.084 2.9E-06 53.8 2.8 22 625-646 22-43 (189)
405 2h57_A ADP-ribosylation factor 91.3 0.082 2.8E-06 54.0 2.7 25 623-647 21-45 (190)
406 3tlx_A Adenylate kinase 2; str 91.3 0.098 3.4E-06 56.4 3.4 27 621-647 27-53 (243)
407 2pbr_A DTMP kinase, thymidylat 91.3 0.097 3.3E-06 53.5 3.2 24 625-648 2-25 (195)
408 3hu3_A Transitional endoplasmi 91.3 0.87 3E-05 54.3 11.9 28 620-647 235-262 (489)
409 1nrj_B SR-beta, signal recogni 91.3 0.089 3E-06 55.0 2.9 24 625-648 14-37 (218)
410 2gf0_A GTP-binding protein DI- 91.3 0.083 2.8E-06 54.1 2.6 23 624-646 9-31 (199)
411 3fb4_A Adenylate kinase; psych 91.3 0.093 3.2E-06 55.0 3.1 23 625-647 2-24 (216)
412 1h65_A Chloroplast outer envel 91.3 0.095 3.2E-06 57.3 3.3 23 625-647 41-63 (270)
413 3i8s_A Ferrous iron transport 91.2 0.092 3.2E-06 57.7 3.1 23 625-647 5-27 (274)
414 3dl0_A Adenylate kinase; phosp 91.2 0.081 2.8E-06 55.5 2.6 23 625-647 2-24 (216)
415 2h17_A ADP-ribosylation factor 91.2 0.091 3.1E-06 53.3 2.8 24 623-646 21-44 (181)
416 3pxi_A Negative regulator of g 91.2 0.38 1.3E-05 60.7 9.1 30 625-654 523-552 (758)
417 3u61_B DNA polymerase accessor 91.2 0.38 1.3E-05 53.7 8.2 24 624-647 49-72 (324)
418 3llu_A RAS-related GTP-binding 91.1 0.11 3.8E-06 53.4 3.5 26 624-649 21-46 (196)
419 2o52_A RAS-related protein RAB 91.1 0.1 3.5E-06 54.0 3.1 23 625-647 27-49 (200)
420 1mh1_A RAC1; GTP-binding, GTPa 91.1 0.093 3.2E-06 52.9 2.8 22 625-646 7-28 (186)
421 1m7b_A RND3/RHOE small GTP-bin 91.1 0.094 3.2E-06 53.3 2.8 22 625-646 9-30 (184)
422 3oes_A GTPase rhebl1; small GT 91.1 0.089 3E-06 54.4 2.7 27 621-647 22-48 (201)
423 2pt5_A Shikimate kinase, SK; a 91.1 0.11 3.7E-06 52.1 3.2 23 625-647 2-24 (168)
424 3exa_A TRNA delta(2)-isopenten 91.1 0.11 3.7E-06 58.2 3.4 26 622-647 2-27 (322)
425 3dz8_A RAS-related protein RAB 91.0 0.092 3.1E-06 53.7 2.7 23 625-647 25-47 (191)
426 2iyv_A Shikimate kinase, SK; t 91.0 0.087 3E-06 53.7 2.5 24 624-647 3-26 (184)
427 2a5j_A RAS-related protein RAB 91.0 0.1 3.4E-06 53.4 2.9 23 625-647 23-45 (191)
428 3ake_A Cytidylate kinase; CMP 91.0 0.08 2.7E-06 54.9 2.2 23 625-647 4-26 (208)
429 1zd9_A ADP-ribosylation factor 91.0 0.1 3.5E-06 53.3 2.9 24 623-646 22-45 (188)
430 3cph_A RAS-related protein SEC 90.9 0.1 3.4E-06 54.2 2.9 26 622-647 19-44 (213)
431 1e6c_A Shikimate kinase; phosp 90.9 0.094 3.2E-06 52.7 2.5 24 624-647 3-26 (173)
432 2bcg_Y Protein YP2, GTP-bindin 90.9 0.099 3.4E-06 54.1 2.8 23 625-647 10-32 (206)
433 1x3s_A RAS-related protein RAB 90.9 0.11 3.6E-06 53.1 2.9 23 625-647 17-39 (195)
434 1jbk_A CLPB protein; beta barr 90.8 0.095 3.3E-06 52.9 2.5 29 621-649 41-69 (195)
435 2zts_A Putative uncharacterize 90.8 0.13 4.5E-06 54.8 3.7 26 620-645 27-52 (251)
436 3be4_A Adenylate kinase; malar 90.8 0.11 3.8E-06 54.7 3.1 26 622-647 4-29 (217)
437 2grj_A Dephospho-COA kinase; T 90.8 0.11 3.9E-06 53.9 3.1 24 623-646 12-35 (192)
438 3bwd_D RAC-like GTP-binding pr 90.7 0.12 4.1E-06 52.0 3.1 24 623-646 8-31 (182)
439 3a1s_A Iron(II) transport prot 90.7 0.12 4E-06 56.4 3.2 23 625-647 7-29 (258)
440 1zj6_A ADP-ribosylation factor 90.6 0.13 4.4E-06 52.3 3.3 23 623-645 16-38 (187)
441 2atv_A RERG, RAS-like estrogen 90.6 0.11 3.9E-06 53.3 2.9 25 622-646 27-51 (196)
442 2fv8_A H6, RHO-related GTP-bin 90.6 0.1 3.6E-06 54.2 2.6 24 624-647 26-49 (207)
443 2ew1_A RAS-related protein RAB 90.5 0.11 3.7E-06 54.1 2.7 22 625-646 28-49 (201)
444 2q3h_A RAS homolog gene family 90.5 0.13 4.4E-06 52.9 3.3 25 622-646 19-43 (201)
445 2f7s_A C25KG, RAS-related prot 90.5 0.13 4.4E-06 53.8 3.2 23 625-647 27-49 (217)
446 2fu5_C RAS-related protein RAB 90.5 0.085 2.9E-06 53.3 1.8 22 625-646 10-31 (183)
447 3reg_A RHO-like small GTPase; 90.5 0.12 4.1E-06 52.9 2.9 23 625-647 25-47 (194)
448 2j1l_A RHO-related GTP-binding 90.5 0.12 4.2E-06 54.0 3.1 22 625-646 36-57 (214)
449 2wsm_A Hydrogenase expression/ 90.4 0.11 3.8E-06 54.4 2.7 25 624-648 31-55 (221)
450 2f6r_A COA synthase, bifunctio 90.4 0.12 4.3E-06 56.9 3.1 22 623-644 75-96 (281)
451 2p5s_A RAS and EF-hand domain 90.4 0.13 4.4E-06 53.1 3.1 27 621-647 26-52 (199)
452 1jr3_A DNA polymerase III subu 90.4 0.28 9.5E-06 55.7 6.2 26 625-650 40-65 (373)
453 2b6h_A ADP-ribosylation factor 90.4 0.13 4.6E-06 52.7 3.2 25 621-645 27-51 (192)
454 3r7w_A Gtpase1, GTP-binding pr 90.3 0.14 4.7E-06 57.3 3.5 28 622-649 2-29 (307)
455 3cnl_A YLQF, putative uncharac 90.3 0.14 4.8E-06 56.0 3.4 29 624-652 100-128 (262)
456 2cjw_A GTP-binding protein GEM 90.3 0.12 4.2E-06 53.1 2.8 22 625-646 8-29 (192)
457 3c5c_A RAS-like protein 12; GD 90.2 0.13 4.3E-06 52.7 2.8 22 625-646 23-44 (187)
458 3e1s_A Exodeoxyribonuclease V, 90.2 0.27 9.4E-06 59.8 6.2 33 622-654 203-235 (574)
459 2gco_A H9, RHO-related GTP-bin 90.1 0.12 4.2E-06 53.4 2.7 23 625-647 27-49 (201)
460 1ko7_A HPR kinase/phosphatase; 90.1 0.15 5E-06 57.2 3.4 33 612-645 133-166 (314)
461 1gwn_A RHO-related GTP-binding 90.1 0.13 4.4E-06 53.7 2.8 24 624-647 29-52 (205)
462 3zvl_A Bifunctional polynucleo 90.0 0.14 4.9E-06 59.8 3.4 29 619-647 254-282 (416)
463 1zuh_A Shikimate kinase; alpha 90.0 0.15 5.1E-06 51.2 3.1 25 623-647 7-31 (168)
464 2fh5_B SR-beta, signal recogni 90.0 0.17 5.7E-06 52.7 3.5 24 624-647 8-31 (214)
465 2iwr_A Centaurin gamma 1; ANK 89.9 0.11 3.6E-06 52.3 1.9 22 625-646 9-30 (178)
466 3foz_A TRNA delta(2)-isopenten 89.9 0.14 4.8E-06 57.1 3.0 25 623-647 10-34 (316)
467 1p5z_B DCK, deoxycytidine kina 89.8 0.12 3.9E-06 56.4 2.2 28 620-647 21-48 (263)
468 4djt_A GTP-binding nuclear pro 89.7 0.086 2.9E-06 55.1 1.1 23 625-647 13-35 (218)
469 3d3q_A TRNA delta(2)-isopenten 89.7 0.13 4.4E-06 58.2 2.6 25 624-648 8-32 (340)
470 2dby_A GTP-binding protein; GD 89.7 0.13 4.3E-06 59.2 2.5 58 625-700 3-60 (368)
471 2atx_A Small GTP binding prote 89.7 0.15 5E-06 52.2 2.8 22 625-646 20-41 (194)
472 3tqf_A HPR(Ser) kinase; transf 89.6 0.22 7.6E-06 50.7 3.9 34 612-645 5-38 (181)
473 2g3y_A GTP-binding protein GEM 89.5 0.18 6.2E-06 53.1 3.4 23 625-647 39-61 (211)
474 3v9p_A DTMP kinase, thymidylat 89.5 0.16 5.4E-06 54.3 2.9 29 621-649 23-51 (227)
475 1sky_E F1-ATPase, F1-ATP synth 89.5 0.093 3.2E-06 61.8 1.2 37 618-654 146-182 (473)
476 2ocp_A DGK, deoxyguanosine kin 89.4 0.17 5.8E-06 54.2 3.2 27 622-648 1-27 (241)
477 2x77_A ADP-ribosylation factor 89.4 0.15 5E-06 51.9 2.5 24 622-645 21-44 (189)
478 4edh_A DTMP kinase, thymidylat 89.4 0.19 6.3E-06 53.2 3.4 29 621-649 4-32 (213)
479 3vfd_A Spastin; ATPase, microt 89.3 0.91 3.1E-05 52.3 9.5 26 622-647 147-172 (389)
480 1puj_A YLQF, conserved hypothe 89.3 0.21 7.1E-06 55.2 3.9 27 622-648 119-145 (282)
481 2x2e_A Dynamin-1; nitration, h 89.2 0.14 4.8E-06 58.4 2.5 23 625-647 33-55 (353)
482 1ak2_A Adenylate kinase isoenz 89.1 0.2 6.8E-06 53.4 3.4 26 622-647 15-40 (233)
483 3crm_A TRNA delta(2)-isopenten 89.1 0.17 5.9E-06 56.9 3.0 25 624-648 6-30 (323)
484 1qvr_A CLPB protein; coiled co 89.0 0.4 1.4E-05 61.4 6.7 35 624-658 589-623 (854)
485 2yc2_C IFT27, small RAB-relate 89.0 0.096 3.3E-06 54.0 0.8 23 624-646 21-43 (208)
486 3ld9_A DTMP kinase, thymidylat 89.0 0.21 7.1E-06 53.2 3.4 30 620-649 18-47 (223)
487 2hup_A RAS-related protein RAB 88.9 0.18 6.2E-06 52.2 2.8 23 625-647 31-53 (201)
488 4gzl_A RAS-related C3 botulinu 88.8 0.18 6E-06 52.4 2.7 24 622-645 29-52 (204)
489 2p65_A Hypothetical protein PF 88.8 0.13 4.4E-06 51.8 1.6 29 621-649 41-69 (187)
490 2orw_A Thymidine kinase; TMTK, 88.8 0.19 6.5E-06 51.8 2.8 27 622-648 2-28 (184)
491 2hf9_A Probable hydrogenase ni 88.7 0.18 6.1E-06 53.0 2.7 26 623-648 38-63 (226)
492 3lv8_A DTMP kinase, thymidylat 88.7 0.22 7.4E-06 53.6 3.3 28 622-649 26-53 (236)
493 3cpj_B GTP-binding protein YPT 88.7 0.19 6.6E-06 52.8 2.9 23 625-647 15-37 (223)
494 3tmk_A Thymidylate kinase; pho 88.6 0.22 7.4E-06 52.8 3.2 29 621-649 3-31 (216)
495 3cf2_A TER ATPase, transitiona 88.6 1.5 5E-05 55.3 11.2 31 618-648 233-263 (806)
496 2xb4_A Adenylate kinase; ATP-b 88.6 0.21 7.2E-06 52.9 3.1 23 625-647 2-24 (223)
497 1e4v_A Adenylate kinase; trans 88.4 0.21 7.3E-06 52.3 3.0 23 625-647 2-24 (214)
498 4tmk_A Protein (thymidylate ki 88.3 0.24 8.1E-06 52.4 3.3 28 622-649 2-29 (213)
499 2h92_A Cytidylate kinase; ross 88.2 0.17 5.9E-06 53.0 2.1 25 623-647 3-27 (219)
500 2j69_A Bacterial dynamin-like 88.2 0.22 7.6E-06 62.1 3.5 26 622-647 68-93 (695)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.7e-108 Score=1088.60 Aligned_cols=918 Identities=17% Similarity=0.165 Sum_probs=650.1
Q ss_pred HHhhc-cCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhccc-----------C----CCChHHHHHHHH-HHH---HHHHH
Q 001091 222 FQRGR-IQKLELLHIPPIPQSETANDASSLLEESLRKQKT-----------D----ATSLPQVIIHAV-WKS---LALNA 281 (1159)
Q Consensus 222 ~~~G~-~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~-----------~----~~sl~~~l~~~~-~~~---~~~~~ 281 (1159)
++.|. |++|+.+|.+++.|+|..+...+.+++.|.++.. + ++--++.++|.- +++ ++++.
T Consensus 2 ~r~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Lfrya~~~d~~l~~~g~ 81 (1321)
T 4f4c_A 2 LRNGSLRQSLRTLDSFSLAPEDVLKTAIKTVEDYEGDNIDSNGEIKITRDAKEEVVNKVSIPQLYRYTTTLEKLLLFIGT 81 (1321)
T ss_dssp --CHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTSTTTBCSSSCBCCSCC---CCSSCCCHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCchhhcCCcccccccCCchhhcccccchhhhhcccccccccccchhhhhhhcccCCCCHHHHhhccChHHHHHHHHHH
Confidence 44554 5679999999999999999999998887754310 0 122345566521 222 33333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-------C-C-----C-Ccc-----h---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 282 AFAGVNTIASYIGPFLITNFVSFLSG-------K-H-----D-HSS-----Y---HYGLVLASVFLFAKTVESLTQRQWY 339 (1159)
Q Consensus 282 l~~l~~~~~~~~~P~ll~~li~~~~~-------~-~-----~-~~~-----~---~~g~~l~~~l~~~~~~~~l~~~~~~ 339 (1159)
+++++..+..-+.++++..+++.+.+ . . . ... . .+.+.+++..+...++..+....+.
T Consensus 82 ~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~ 161 (1321)
T 4f4c_A 82 LVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQITVTCYL 161 (1321)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333322233455555543211 0 0 0 000 0 0011111111111222222223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhhh
Q 001091 340 FGANRIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGA 415 (1159)
Q Consensus 340 ~~~~r~~~riR~~L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg~ 415 (1159)
+ +|.|+-..+...+|+|.++++.. .+++|+++|++++|++++++++. .+..++..++.++.++++++.. +|
T Consensus 162 ~----~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~-~~ 236 (1321)
T 4f4c_A 162 Y----VAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTH-SW 236 (1321)
T ss_dssp H----HHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHH-CH
T ss_pred H----HHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 3 44444455556779999998753 34899999999999999999764 5678888888888887777653 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 416 APAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYL 495 (1159)
Q Consensus 416 ~~~l~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~ 495 (1159)
..+++.++++++++++...+.++.++..++.++..+++.+.++|.++|||+||+|+||+.+.+++.+..++..+...+..
T Consensus 237 ~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 316 (1321)
T 4f4c_A 237 QLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKG 316 (1321)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777888888889999999999999999999999999999999999999999998888876555554433333
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 001091 496 YTCSAIAFLFWAS--PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKED 573 (1159)
Q Consensus 496 ~~~~~~~~~~~~~--~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~ 573 (1159)
...+......... ...+.+++++.+.+.++.+++|.+++++.++..+..|+..++..+..+.++.+|++||.++|+.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 396 (1321)
T 4f4c_A 317 LFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRK 396 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3333332222222 22344566788888899999999999999999999999999999999999999999999999876
Q ss_pred CCCCCC--CCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCC
Q 001091 574 NQKKPI--TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI 650 (1159)
Q Consensus 574 e~~~~~--~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~ 650 (1159)
+..+.. ...+..+.++.|+++|++|+|++. ++.|+|+| ||+|++||++|||||+|||||||+++|+|+|+|.
T Consensus 397 ~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~-----~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~ 471 (1321)
T 4f4c_A 397 PVIDSSSKAGRKDMKIKGDITVENVHFTYPSR-----PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL 471 (1321)
T ss_dssp CCSSCSSSCCCCCCCCCCCEEEEEEEECCSSS-----TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS
T ss_pred ccccccccccccCCCCCCcEEEEEeeeeCCCC-----CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccc
Confidence 522211 111222234679999999999876 46789999 9999999999999999999999999999999999
Q ss_pred CCcEEEECC-------------EEEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccC
Q 001091 651 SGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1159)
Q Consensus 651 ~G~i~~v~g-------------~iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe 716 (1159)
+|+| .++| +||||+|+||||||||||||+||+| .+++++.++++.|++++|++.||+||+|+|||
T Consensus 472 ~G~I-~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe 550 (1321)
T 4f4c_A 472 KGKI-TIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGD 550 (1321)
T ss_dssp EEEE-EETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESS
T ss_pred cCcc-cCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecC
Confidence 9999 9998 5999999999999999999999986 68999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCe
Q 001091 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1159)
Q Consensus 717 ~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~ 796 (1159)
+|.+|||||||||+||||+|+||+||||||||||||++++ ++++++++++++|||+|+||||+++++.||+|+||+||+
T Consensus 551 ~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te-~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ 629 (1321)
T 4f4c_A 551 RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESE-GIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQ 629 (1321)
T ss_dssp SSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTH-HHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTE
T ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHH-HHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCe
Confidence 9999999999999999999999999999999999999995 577889999999999999999999999999999999999
Q ss_pred EEEecChHHHHhhcchHHHHHHHHhhhccc-----CCCCCCccc--ccccCccccc-chhhhhc----cCCC-ccCCCCC
Q 001091 797 IEQSGKYEDLIADQNSELVRQMKAHRKSLD-----QVNPPQEDK--CLSRVPCQMS-QITEERF----ARPI-SCGEFSG 863 (1159)
Q Consensus 797 I~e~Gt~~eL~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~-~~~~~~~----~~~~-~~~~~~~ 863 (1159)
|+|+|+|+||++ +++.|.++++.+..... +.+...++. .......... +....++ .... .......
T Consensus 630 ive~Gth~eL~~-~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1321)
T 4f4c_A 630 VVEVGDHRALMA-QQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNG 708 (1321)
T ss_dssp EEEEECHHHHHT-TTCHHHHHHHHHHHHHHHHHHHCC-------------------------------------------
T ss_pred eeccCCHHHHHH-hhhHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhccccccccCC
Confidence 999999999999 89999999876542210 000000000 0000000000 0000000 0000 0000000
Q ss_pred C-Cccchh---------------hcCcchHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhccchhee----eccccc--
Q 001091 864 R-SQDEDT---------------ELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIA----WATDEK-- 921 (1159)
Q Consensus 864 ~-~~~e~~---------------~~G~v~~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~----~w~~~~-- 921 (1159)
. .++|++ +.|..++..|+.|......++.+++.+++.++.........+|++ .|..+.
T Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1321)
T 4f4c_A 709 PVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPAD 788 (1321)
T ss_dssp -------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSST
T ss_pred cchhHHHhhccchhHHHHHHHHHHcCCcceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 1 222223 333333333433333222222222222222222222222222333 222111
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc--CChhHHHHHhhcCHHHHHh
Q 001091 922 RKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDS--TPSSRILNRCSTDQSTVDT 999 (1159)
Q Consensus 922 ~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~--tp~GrIlNRfS~D~~~vD~ 999 (1159)
......+|..+|++++++..++.+++.+++...+.++++++|++++++++++||+|||+ ||+|+|+|||++|++.+|.
T Consensus 789 ~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~ 868 (1321)
T 4f4c_A 789 FLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRT 868 (1321)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHH
Confidence 11234678899999999999999999999999999999999999999999999999997 8999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHhhccchHHHHHHHHhcchh
Q 001091 1000 DIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYIT--TARELARMVGTRKAPILHHFSESIAGAT 1077 (1159)
Q Consensus 1000 ~lp~~l~~~~~~~~~~l~~i~vi~~~~~~~~~~~iPl~~~~~~~q~~Yl~--tsReLkRL~~~srSPi~shf~Etl~Gl~ 1077 (1159)
.+|..+..++..++.+++.++++++..|++.+++++++.++++.+.++.+ ..++.++.+..+ +...++.|+++|+.
T Consensus 869 ~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~l~gi~ 946 (1321)
T 4f4c_A 869 AIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFA--DSGKIAIEAIENVR 946 (1321)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHH--HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhHH
Confidence 99999999999999999999999999998877766666555555555544 345556655554 45577899999999
Q ss_pred hhhhccchHHHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHhcCCCCCCHHHHHHHHHHhcc
Q 001091 1078 TIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFA---FFLVLIILVTLPRSAIDPSKFLQLFISISP 1154 (1159)
Q Consensus 1078 tIRAf~~e~~f~~~~~~~lD~~~~~~~~~~~~~rWL~~rldll~~~~---~~~~~~~~v~~~~~~~~~g~v~~~~~~is~ 1154 (1159)
|||+|++|++|.+++.+.+|.+.+..+.....+.|.....+.+..+. ++..++.++.....+++++.++.+++++.+
T Consensus 947 tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~ 1026 (1321)
T 4f4c_A 947 TVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITI 1026 (1321)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHT
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHH
Confidence 99999999999999999999999988765554444333333332222 222222333334456777777766655544
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.4e-86 Score=876.74 Aligned_cols=860 Identities=15% Similarity=0.155 Sum_probs=595.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------CCc---------chHHHHHHHHHHHHHHHHHHHH
Q 001091 272 AVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKH--------DHS---------SYHYGLVLASVFLFAKTVESLT 334 (1159)
Q Consensus 272 ~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~--------~~~---------~~~~g~~l~~~l~~~~~~~~l~ 334 (1159)
.+|..++.+.++.++..+...+.|+++..+++.+.... ... .......++..++...++..++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1284)
T 3g5u_A 45 LDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIV 124 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777778878888888888888877542110 000 0000111222222222222332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 001091 335 QRQWYFGANRIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILY 410 (1159)
Q Consensus 335 ~~~~~~~~~r~~~riR~~L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~~-~~~~w~~pl~i~ia~~lL~ 410 (1159)
.....+...+.+.++-..+...+|+|.++++.. ..++|+++|++++|++.+++.+.. +..+...++.++.++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 204 (1284)
T 3g5u_A 125 AYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGF 204 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233344566777777778889999998753 348999999999999999987753 3344444555554444444
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHH
Q 001091 411 KNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDS 490 (1159)
Q Consensus 411 ~~lg~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~ 490 (1159)
. +.|..+++.+++++++..+...+.++.++..++.++..++..+.+.|.++||++||.|++|+.+.++..+..++-.+.
T Consensus 205 ~-~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~ 283 (1284)
T 3g5u_A 205 T-RGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRL 283 (1284)
T ss_dssp H-TTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 3 333455666666666677777788888888889999999999999999999999999999987777766543332222
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 491 LKKYLYTCSAIAFLFW--ASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQE 568 (1159)
Q Consensus 491 l~~~~~~~~~~~~~~~--~~~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~ 568 (1159)
..+.....+....... .....+.+++++.+.+..+.+++|.+++++..+.....|+..+...+..+.++.++.+|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~ 363 (1284)
T 3g5u_A 284 GIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFK 363 (1284)
T ss_dssp HHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221112221111111 11223445677888888889999999988888888889999999999999999999999999
Q ss_pred HhcccCCCCC--CCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhC
Q 001091 569 FIKEDNQKKP--ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILG 645 (1159)
Q Consensus 569 fL~~~e~~~~--~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llG 645 (1159)
+++.+++.+. ....+..+..+.|+++|++|+|+++ ++.++|+| ||++++||++|||||+|||||||+++|+|
T Consensus 364 ~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~-----~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g 438 (1284)
T 3g5u_A 364 IIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSR-----KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQR 438 (1284)
T ss_dssp TTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSST-----TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTT
T ss_pred HHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCC-----CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 9987652211 1111112234679999999999864 34689999 99999999999999999999999999999
Q ss_pred CccCCCCcEEEECCE-------------EEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCC
Q 001091 646 EIPRISGAAIKVHGK-------------KAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDL 711 (1159)
Q Consensus 646 e~~~~~G~i~~v~g~-------------iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~ 711 (1159)
+++|++|+| .++|. +|||+|+||+|++||||||.||.+ .++++++++++.|+++++++.+|+|++
T Consensus 439 ~~~~~~G~i-~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~ 517 (1284)
T 3g5u_A 439 LYDPLDGMV-SIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFD 517 (1284)
T ss_dssp SSCCSEEEE-EETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGG
T ss_pred CCCCCCeEE-EECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccc
Confidence 999999999 99984 999999999999999999999975 678899999999999999999999999
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEE
Q 001091 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLV 791 (1159)
Q Consensus 712 T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iiv 791 (1159)
|.+||+|.+|||||||||+||||+|+||+|+||||||||||+++++. ++++++...+|+|+|+||||+++++.||+|+|
T Consensus 518 t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~-i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~v 596 (1284)
T 3g5u_A 518 TLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV-VQAALDKAREGRTTIVIAHRLSTVRNADVIAG 596 (1284)
T ss_dssp CCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHH-HHHHHHHHHTTSEEEEECSCHHHHTTCSEEEE
T ss_pred ccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHH-HHHHHHHHcCCCEEEEEecCHHHHHcCCEEEE
Confidence 99999999999999999999999999999999999999999999765 46678888889999999999999999999999
Q ss_pred EeCCeEEEecChHHHHhhcchHHHHHHHHhhhcccCCCCCCc---cccccc--Ccccccchh--hhhccCCC--ccCCCC
Q 001091 792 MKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQE---DKCLSR--VPCQMSQIT--EERFARPI--SCGEFS 862 (1159)
Q Consensus 792 l~~G~I~e~Gt~~eL~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~--~~~~~~~~--~~~~~~ 862 (1159)
|++|+|+++|+|+|+++ .++.|.+++..+....+.....+. .+.... ......... ........ ......
T Consensus 597 l~~G~i~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1284)
T 3g5u_A 597 FDGGVIVEQGNHDELMR-EKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQD 675 (1284)
T ss_dssp CSSSCCCCEECHHHHHH-TTSHHHHHHHHTC-------------------------------------------------
T ss_pred EECCEEEEECCHHHHHh-CCCHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999 788888887665432111000000 000000 000000000 00000000 000000
Q ss_pred CC-Cccc--hhhcCcchHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcc----chheeecccccc----cCCchhHHH
Q 001091 863 GR-SQDE--DTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGS----NYWIAWATDEKR----KVSREQLIG 931 (1159)
Q Consensus 863 ~~-~~~e--~~~~G~v~~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~wl~~w~~~~~----~~~~~~~l~ 931 (1159)
.. ..+| +......++..++.|.+.. +..+.+.+++.++..+..... ..|+..|....+ ......|..
T Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 753 (1284)
T 3g5u_A 676 RKLSTKEALDEDVPPASFWRILKLNSTE--WPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSL 753 (1284)
T ss_dssp --------CCCCCSCCCTTHHHHHHHHT--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHH
T ss_pred cccchhhhhhccccchHHHHHHHHhcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHH
Confidence 00 1111 1112223333444554432 222222222222222222222 223333332211 112356788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc--cCChhHHHHHhhcCHHHHHhhHHHHHHHHH
Q 001091 932 VFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFD--STPSSRILNRCSTDQSTVDTDIPYRLAGLA 1009 (1159)
Q Consensus 932 vy~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD--~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~ 1009 (1159)
+|++++++..++.+++.+.+...+.+.+.++|.+++++++++|++||| .+|+|+|+|||++|++.+|..++..+..++
T Consensus 754 ~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~ 833 (1284)
T 3g5u_A 754 LFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIF 833 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999 589999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHH---HHHHHHHHHHHHHHHHHh--hhHHHHHHHhhccchHHHHHHHHhcchhhhhhccc
Q 001091 1010 FALIQLLSIIILMSQAAWQVFP---LFLVILGISIWYQAYYIT--TARELARMVGTRKAPILHHFSESIAGATTIRCFNQ 1084 (1159)
Q Consensus 1010 ~~~~~~l~~i~vi~~~~~~~~~---~~iPl~~~~~~~q~~Yl~--tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~ 1084 (1159)
..++.+++.++++....|.+.+ +++|+++++.+++.++++ ..+..++++. ...++.|+++|+.|||+|++
T Consensus 834 ~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~e~l~gi~ti~a~~~ 908 (1284)
T 3g5u_A 834 QNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEG-----SGKIATEAIENFRTVVSLTR 908 (1284)
T ss_dssp HHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHTTCTTTTTCSS
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcc
Confidence 9999998888888888776543 456666666555555443 2333344433 33578999999999999999
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHhcCCCCCCHHHHHHHHH
Q 001091 1085 ENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLII----LVTLPRSAIDPSKFLQLFI 1150 (1159)
Q Consensus 1085 e~~f~~~~~~~lD~~~~~~~~~~~~~rWL~~rldll~~~~~~~~~~~----~v~~~~~~~~~g~v~~~~~ 1150 (1159)
|++|.+++.+..+...+... ...+|.++...+...+..+..++. ..+...+.++++.++.++.
T Consensus 909 e~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~ 975 (1284)
T 3g5u_A 909 EQKFETMYAQSLQIPYRNAM---KKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFS 975 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 99999999999887666433 445566665555444332222111 1223345566655444443
No 3
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.9e-75 Score=718.42 Aligned_cols=544 Identities=21% Similarity=0.268 Sum_probs=450.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 267 QVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYH----YGLVLASVFLFAKTVESLTQRQWYFGA 342 (1159)
Q Consensus 267 ~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~----~g~~l~~~l~~~~~~~~l~~~~~~~~~ 342 (1159)
+.+++.+++.++.+.++.++..++..+.|++++.+++.+.......... ..+.+++++++..++..++.....+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (578)
T 4a82_A 6 LQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLA 85 (578)
T ss_dssp HHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888999999999999999999999999875432201111 013344445555556666666666667
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhhhHHH
Q 001091 343 NRIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPA 418 (1159)
Q Consensus 343 ~r~~~riR~~L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg~~~~ 418 (1159)
.+++.++...+...+|+|.++++.. ..++|+++|++++|++++.+++. .++.+|..++.+++++++++..-+ ..+
T Consensus 86 ~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~-~l~ 164 (578)
T 4a82_A 86 QWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDV-KLT 164 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCT-TTH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHH
Confidence 7889999999999999999998764 34899999999999999999775 366788888888888777776544 556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 419 FAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTC 498 (1159)
Q Consensus 419 l~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~ 498 (1159)
+++++++++++++...+.++.++..++.++..+++.+.++|.++||++||+|+||+.+.+++++.++++.+...+.....
T Consensus 165 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (578)
T 4a82_A 165 LAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWN 244 (578)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777777888899999999999999999999999999999999999999998888887666655544444333
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 001091 499 SAIAFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQK 576 (1159)
Q Consensus 499 ~~~~~~~~~~~--~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~ 576 (1159)
+.......... ..+.+++++.+.+..+.+++|.+++++.++..+..|+..++..+..+.++.+|++|+.++++.+++.
T Consensus 245 ~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 324 (578)
T 4a82_A 245 AYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDI 324 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 33222222211 2234566788888889999999999999999999999999999999999999999999999876532
Q ss_pred -CCCCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcE
Q 001091 577 -KPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1159)
Q Consensus 577 -~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i 654 (1159)
+.....+....++.|+++|++|+|++. +.++|+| |+++++||+++|+||+|||||||+++|+|+++|++|+|
T Consensus 325 ~~~~~~~~~~~~~~~i~~~~v~~~y~~~------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 398 (578)
T 4a82_A 325 KNGVGAQPIEIKQGRIDIDHVSFQYNDN------EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI 398 (578)
T ss_dssp CCCTTCCCCCCCSCCEEEEEEEECSCSS------SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEE
T ss_pred cCCCCccccCCCCCeEEEEEEEEEcCCC------CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEE
Confidence 211111112234679999999999853 3679999 99999999999999999999999999999999999999
Q ss_pred EEECC-------------EEEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 655 IKVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 655 ~~v~g-------------~iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
.++| +++||||+||+|++||+|||.+|.+ .++++..++++.++++++++.+|+|++|.+||+|.+
T Consensus 399 -~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~ 477 (578)
T 4a82_A 399 -LIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477 (578)
T ss_dssp -EETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTT
T ss_pred -EECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCc
Confidence 9998 4999999999999999999999976 467788999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEe
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~ 800 (1159)
|||||||||+||||+++||+|+||||||||||+++++.+ .++++.+.+++|+|+|||+++.++.||+|++|++|+|+++
T Consensus 478 LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i-~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~ 556 (578)
T 4a82_A 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII-QEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVET 556 (578)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHH-HHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999997765 5678888889999999999999999999999999999999
Q ss_pred cChHHHHhhcchHHHHHHHH
Q 001091 801 GKYEDLIADQNSELVRQMKA 820 (1159)
Q Consensus 801 Gt~~eL~~~~~~~~~~l~~~ 820 (1159)
|+|+|+++ .++.|.++.+.
T Consensus 557 g~~~el~~-~~~~~~~~~~~ 575 (578)
T 4a82_A 557 GTHRELIA-KQGAYEHLYSI 575 (578)
T ss_dssp ECHHHHHH-TTSHHHHHHTT
T ss_pred CCHHHHHh-CCcHHHHHHHh
Confidence 99999998 77788887643
No 4
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=9.8e-74 Score=705.11 Aligned_cols=544 Identities=19% Similarity=0.248 Sum_probs=434.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 264 SLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGAN 343 (1159)
Q Consensus 264 sl~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 343 (1159)
+.++.+++.+++.++...++.++..++..++|++++.+++....... ... .+.+++.+++..++..+......+...
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (587)
T 3qf4_A 12 KTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD-FSL--VLKTGILMLIVALIGAVGGIGCTVFAS 88 (587)
T ss_dssp CCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778889999999999999999999999999999998654322 111 112222222222223332222223344
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHhhhHHHH
Q 001091 344 RIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYI-HRIWLLPVQVFLALVILYKNLGAAPAF 419 (1159)
Q Consensus 344 r~~~riR~~L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~~~-~~~w~~pl~i~ia~~lL~~~lg~~~~l 419 (1159)
+.+.++...+...+|+|.++++.. ..++|+++|++++|++++.+++... ..++..++.++.++++++..-+ ..++
T Consensus 89 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~-~l~l 167 (587)
T 3qf4_A 89 YASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINV-KLSS 167 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCT-TTTH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 556666666777889999988754 2389999999999999999987643 4455566666666655553322 4455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHH----HHHHHHHHHHHH
Q 001091 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRL----REIERDSLKKYL 495 (1159)
Q Consensus 420 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~----R~~E~~~l~~~~ 495 (1159)
+.+++++++.++...+.++.++..++.++..+++.+.++|.++||++||.|++|+.+.+++.+. |+.+.+..+...
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (587)
T 3qf4_A 168 VLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIV 247 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666667777788888899999999999999999999999999999999998876666554 444444333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001091 496 YTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (1159)
Q Consensus 496 ~~~~~~~~~~~~~~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~ 575 (1159)
....... .......+.+++++.+.+..+.++++.+++++.++..+..|+..++..+..+.++.+|.+|+.++++.++.
T Consensus 248 ~~~~~~~--~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~ 325 (587)
T 3qf4_A 248 FALPLFI--FIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPA 325 (587)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 2222111 22233445567788888888999999999999999999999999999999999999999999999987652
Q ss_pred -CCCCCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCc
Q 001091 576 -KKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGA 653 (1159)
Q Consensus 576 -~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~ 653 (1159)
++.....+..+.++.|+++|++|+|++. ..++|+| ||++++||+++|+||+|||||||+++|+|+++|++|+
T Consensus 326 ~~~~~~~~~~~~~~~~i~~~~v~~~y~~~------~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~ 399 (587)
T 3qf4_A 326 IEEADNALALPNVEGSVSFENVEFRYFEN------TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGR 399 (587)
T ss_dssp CCCCTTCBCCSCCCCCEEEEEEEECSSSS------SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEE
T ss_pred cCCCCCccccCCCCCcEEEEEEEEEcCCC------CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcE
Confidence 2211111112234579999999999754 4679999 9999999999999999999999999999999999999
Q ss_pred EEEECC-------------EEEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCC
Q 001091 654 AIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1159)
Q Consensus 654 i~~v~g-------------~iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~ 719 (1159)
| .++| +++||||+|++|++||||||.+|.+ .+++++.++++.|+++++++.+|+|++|.+||+|.
T Consensus 400 i-~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~ 478 (587)
T 3qf4_A 400 V-EVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGR 478 (587)
T ss_dssp E-EESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSC
T ss_pred E-EECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCC
Confidence 9 9987 4999999999999999999999975 67888999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEE
Q 001091 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1159)
Q Consensus 720 ~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e 799 (1159)
+|||||||||+||||+++||+|+||||||||||+++++++.+ .++.+.+|+|+|+|||+++.+..||+|++|++|+|++
T Consensus 479 ~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~ 557 (587)
T 3qf4_A 479 NFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILD-GLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAG 557 (587)
T ss_dssp SSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHH-HHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEE
T ss_pred CcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999998865 5777778999999999999999999999999999999
Q ss_pred ecChHHHHhhcchHHHHHHHHhh
Q 001091 800 SGKYEDLIADQNSELVRQMKAHR 822 (1159)
Q Consensus 800 ~Gt~~eL~~~~~~~~~~l~~~~~ 822 (1159)
+|+|+|+++ .++.|.++.+.+.
T Consensus 558 ~g~~~el~~-~~~~~~~~~~~~~ 579 (587)
T 3qf4_A 558 FGTHKELLE-HCKPYREIYESQF 579 (587)
T ss_dssp EECHHHHHH-HCHHHHHHHHHHC
T ss_pred ECCHHHHHh-CCcHHHHHHHHHh
Confidence 999999998 7888888876653
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.7e-74 Score=713.85 Aligned_cols=539 Identities=20% Similarity=0.254 Sum_probs=449.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 270 IHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRV 349 (1159)
Q Consensus 270 ~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~ri 349 (1159)
++.+++.++...++.++..++..+.|++++.+++.+..+.. ... ...+++++++..++..++.....+...+++.++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (598)
T 3qf4_B 32 LRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR-FDL--LPRYMLILGTIYALTSLLFWLQGKIMLTLSQDV 108 (598)
T ss_dssp TGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC-GGG--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888899999999999999999999998764332 121 122223333333444444444445556778888
Q ss_pred HHHHHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHH
Q 001091 350 RSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFST 425 (1159)
Q Consensus 350 R~~L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l~~~ 425 (1159)
...+...+|+|.++++.. ..++|+++|++++|++++.+++. .+..++..++.++.++++++..-+ ..+++.++++
T Consensus 109 ~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~-~l~l~~l~~~ 187 (598)
T 3qf4_B 109 VFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNV-ILSLVTLSIV 187 (598)
T ss_dssp HHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHTTHH
T ss_pred HHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 888888999999998764 23899999999999999999875 577888888888888877776544 6666667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 426 IFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLF 505 (1159)
Q Consensus 426 i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~ 505 (1159)
++.+++...+.++.++..++..+..+++.+.+.|.++|+++||+|+||+.+.+++++.+++..+...+.....+......
T Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (598)
T 3qf4_B 188 PLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLM 267 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888888999999999999999999999999999999999999999999999887777766555544433322222
Q ss_pred HHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCC
Q 001091 506 WASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPT 583 (1159)
Q Consensus 506 ~~~~--~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~ 583 (1159)
.... ..+.+++++++.+..+.+++|.+++++.+...+..|+..++..+..+.++.+|.+|+.++++.+++.+.....+
T Consensus 268 ~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~ 347 (598)
T 3qf4_B 268 NMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVE 347 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCC
Confidence 2211 23445667888888899999999999999999999999999999999999999999999998766322111111
Q ss_pred CCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---
Q 001091 584 SKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--- 659 (1159)
Q Consensus 584 ~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--- 659 (1159)
..+.++.|+++|++|+|+++ .++|+| |+++++||+++|+||+|||||||+++|+|+++|++|+| .++|
T Consensus 348 ~~~~~~~i~~~~v~~~y~~~-------~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i-~~~g~~i 419 (598)
T 3qf4_B 348 LREVRGEIEFKNVWFSYDKK-------KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI-LVDGIDI 419 (598)
T ss_dssp CCSCCCCEEEEEEECCSSSS-------SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEE-EETTEEG
T ss_pred CCCCCCeEEEEEEEEECCCC-------CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEE-EECCEEh
Confidence 22234579999999999743 579999 99999999999999999999999999999999999999 9988
Q ss_pred ----------EEEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHH
Q 001091 660 ----------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1159)
Q Consensus 660 ----------~iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQR 728 (1159)
+++||||+|++|++||+|||.+|.+ .++++.+++++.++++++++.+|+|++|.+||+|.+||||||||
T Consensus 420 ~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qr 499 (598)
T 3qf4_B 420 RKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQL 499 (598)
T ss_dssp GGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHH
T ss_pred hhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHH
Confidence 4999999999999999999999975 67788999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHHHh
Q 001091 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 729 IaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
|+||||++++|+|+||||||||||+++++++. +++..+.+|+|+|+|||+++.++.||+|++|++|+|+++|+|+|+++
T Consensus 500 v~iAral~~~p~illlDEpts~LD~~~~~~i~-~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 500 LAITRAFLANPKILILDEATSNVDTKTEKSIQ-AAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp HHHHHHHHTCCSEEEECCCCTTCCHHHHHHHH-HHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHH
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHH-HHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999998875 56777778999999999999999999999999999999999999998
Q ss_pred hcchHHHHHHHHhh
Q 001091 809 DQNSELVRQMKAHR 822 (1159)
Q Consensus 809 ~~~~~~~~l~~~~~ 822 (1159)
.++.|.+++..+.
T Consensus 579 -~~~~~~~~~~~~~ 591 (598)
T 3qf4_B 579 -KRGFYYELFTSQY 591 (598)
T ss_dssp -TTCHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHh
Confidence 7888988887654
No 6
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=5.2e-71 Score=681.53 Aligned_cols=539 Identities=19% Similarity=0.229 Sum_probs=442.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 267 QVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (1159)
Q Consensus 267 ~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~ 346 (1159)
+.+++.+++.++...++.++..++..+.|++++.+++.+..+.. . .. .+.+++++++..++..++.....+...+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (582)
T 3b5x_A 17 WTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE-S-NF-LRILPFMILGLMFVRGLSGFASSYCLSWVS 93 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-h-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888999999999999999999998753222 1 11 222223334444555565555566677889
Q ss_pred HHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHH
Q 001091 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFF-LYIHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1159)
Q Consensus 347 ~riR~~L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~-~~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l 422 (1159)
.++...+...+|+|.++++.. ..++|+++|++++|++++.+++ ..+..++..++.+++++++++. +.|..+++.+
T Consensus 94 ~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~-~~~~l~li~l 172 (582)
T 3b5x_A 94 GNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFW-NSWQLSLVLI 172 (582)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHH
Confidence 999999999999999998753 3489999999999999999975 4677888888888877776665 4446666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 001091 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLL----RLREIERDSLKKYLYTC 498 (1159)
Q Consensus 423 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~----~~R~~E~~~l~~~~~~~ 498 (1159)
+++++.+++...+.++.++..++..+..+++.+.+.|.++|+++||.|++|+.+.+++. +.++.+.+..+......
T Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (582)
T 3b5x_A 173 VVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIAD 252 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777788888899999999999999999999999999999999998766655 44555555544444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 001091 499 SAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP 578 (1159)
Q Consensus 499 ~~~~~~~~~~~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~ 578 (1159)
....++.... .+.+++++.+.+..+.+++|.+++++.++..+..|+..++..+..+.++.++++|+.++++.+++.+.
T Consensus 253 ~~~~~~~~~~--~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 330 (582)
T 3b5x_A 253 PVIQMIASLA--LFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDN 330 (582)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC
Confidence 3333332222 23356678888888999999999999999999999999999999999999999999999987653221
Q ss_pred CCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEE
Q 001091 579 ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (1159)
Q Consensus 579 ~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v 657 (1159)
.. .+..+..+.|+++|++|+|+++ +.++|+| |+++++||+++|+||+|||||||+++|+|+++|++|+| .+
T Consensus 331 ~~-~~~~~~~~~i~~~~v~~~y~~~------~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i-~~ 402 (582)
T 3b5x_A 331 GK-YEAERVNGEVDVKDVTFTYQGK------EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI-CL 402 (582)
T ss_pred CC-CCCCCCCCeEEEEEEEEEcCCC------CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEE-EE
Confidence 11 1111223569999999999743 2578999 99999999999999999999999999999999999999 88
Q ss_pred CC-------------EEEEEecCCCCCCCcHHHHHhcCC--CCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCC
Q 001091 658 HG-------------KKAYVPQSSWIQTGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1159)
Q Consensus 658 ~g-------------~iayv~Q~pwi~~gTIreNIlfG~--~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LS 722 (1159)
+| +++||||+|++|++||+|||.+|. +.++++++++++.++++++++.+|+|++|.+||+|.+||
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LS 482 (582)
T 3b5x_A 403 DGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLS 482 (582)
T ss_pred CCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCC
Confidence 87 489999999999999999999986 467889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecC
Q 001091 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1159)
Q Consensus 723 GGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt 802 (1159)
|||||||+||||+++||+|+||||||||||+++++.+. +.++.+.+|+|+|+|||+++.++.||+|++|++|+|++.|+
T Consensus 483 gGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~-~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~ 561 (582)
T 3b5x_A 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQ-AALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGR 561 (582)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHH-HHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999988774 56777778999999999999999999999999999999999
Q ss_pred hHHHHhhcchHHHHHHHHh
Q 001091 803 YEDLIADQNSELVRQMKAH 821 (1159)
Q Consensus 803 ~~eL~~~~~~~~~~l~~~~ 821 (1159)
|+|+.+ .++.|.++++.+
T Consensus 562 ~~~l~~-~~~~~~~~~~~q 579 (582)
T 3b5x_A 562 HADLLA-QDGAYAQLHRIQ 579 (582)
T ss_pred HHHHHh-CCcHHHHHHHHh
Confidence 999998 778888887654
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=3.9e-71 Score=682.60 Aligned_cols=537 Identities=18% Similarity=0.225 Sum_probs=440.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIR 348 (1159)
Q Consensus 269 l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~r 348 (1159)
.++.+++.++...++.++..++..+.|++++.+++.+..+.. ... .+.+++++++..++..++.....+...+.+.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (582)
T 3b60_A 19 TIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD--RSV-LLWMPLVVIGLMILRGITSYISSYCISWVSGK 95 (582)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT--HHH-HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567778888888899999999999999999997653322 111 22222333444455556555555667788999
Q ss_pred HHHHHHHHHHHHHhcccCCC---CChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHH
Q 001091 349 VRSALTVLIYKRSMAIKFAG---PSSGIIINMINVDVERIGDFF-LYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1159)
Q Consensus 349 iR~~L~~~iy~K~L~ls~~~---~~~G~i~nlms~D~~~i~~~~-~~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l~~ 424 (1159)
+...+...+|+|.++++... .++|+++|++++|++.+.+++ ..+..++..++.+++++++++. +.|..+++.+++
T Consensus 96 ~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~-~~~~l~li~l~~ 174 (582)
T 3b60_A 96 VVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFY-YSWQLSIILVVL 174 (582)
T ss_dssp HHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHH
Confidence 99999999999999987642 389999999999999999965 4677888888888877777665 443556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 001091 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR----LREIERDSLKKYLYTCSA 500 (1159)
Q Consensus 425 ~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~----~R~~E~~~l~~~~~~~~~ 500 (1159)
+++..++...+.++.++..++..+..+++.+.+.|.++|+++||.|++|+.+.+++.+ .++.+.+..+........
T Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (582)
T 3b60_A 175 APIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPI 254 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777888889999999999999999999999999999999999987666554 455555544444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 001091 501 IAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPIT 580 (1159)
Q Consensus 501 ~~~~~~~~~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~ 580 (1159)
..++.... .+.+++++.+.+..+.+++|.+++++.++..+..|+..++..+..+.++.++++|+.++++.+++.+...
T Consensus 255 ~~~~~~~~--~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~ 332 (582)
T 3b60_A 255 IQLIASLA--LAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGK 332 (582)
T ss_dssp HHHHHHHH--HHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCCC
T ss_pred HHHHHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCC
Confidence 33322222 2335567777778889999999999999999999999999999999999999999999998765322111
Q ss_pred CCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC
Q 001091 581 EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (1159)
Q Consensus 581 ~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g 659 (1159)
.+..+..+.|+++|++|+|+++ +.++|+| |+++++||+++|+||+|||||||+++|+|+++|++|+| .++|
T Consensus 333 -~~~~~~~~~i~~~~v~~~y~~~------~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i-~~~g 404 (582)
T 3b60_A 333 -RVIDRATGDLEFRNVTFTYPGR------EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI-LMDG 404 (582)
T ss_dssp -BCCSCCCCCEEEEEEEECSSSS------SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEE-EETT
T ss_pred -CCCCCCCCcEEEEEEEEEcCCC------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeE-EECC
Confidence 1111223569999999999742 2578999 99999999999999999999999999999999999999 9987
Q ss_pred -------------EEEEEecCCCCCCCcHHHHHhcCC--CCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHH
Q 001091 660 -------------KKAYVPQSSWIQTGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1159)
Q Consensus 660 -------------~iayv~Q~pwi~~gTIreNIlfG~--~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGG 724 (1159)
+++||||+|++|++||+|||.+|. +.++++++++++.++++++++.+|+|++|.+||+|.+||||
T Consensus 405 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgG 484 (582)
T 3b60_A 405 HDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGG 484 (582)
T ss_dssp EETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHH
T ss_pred EEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHH
Confidence 389999999999999999999986 46788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChH
Q 001091 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1159)
Q Consensus 725 QKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~ 804 (1159)
|||||+||||++++|+|+||||||||||+++++.+. +.++.+.+|+|+|+|||+++.++.||+|++|++|+|++.|+|+
T Consensus 485 q~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~-~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b60_A 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQ-AALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHS 563 (582)
T ss_dssp HHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHH-HHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHH-HHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999988775 5677777899999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHh
Q 001091 805 DLIADQNSELVRQMKAH 821 (1159)
Q Consensus 805 eL~~~~~~~~~~l~~~~ 821 (1159)
|+++ .++.|.++.+.+
T Consensus 564 ~l~~-~~~~~~~~~~~q 579 (582)
T 3b60_A 564 ELLA-QHGVYAQLHKMQ 579 (582)
T ss_dssp HHHH-HTSSHHHHHHHT
T ss_pred HHHH-cCCHHHHHHHHh
Confidence 9998 677788887654
No 8
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.3e-70 Score=679.81 Aligned_cols=544 Identities=21% Similarity=0.243 Sum_probs=423.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (1159)
Q Consensus 268 ~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~ 347 (1159)
.+++.+++.++...++.++..++..+.|++++.+++.+............+.+++++++..++..++.....+...+.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (595)
T 2yl4_A 12 GLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQ 91 (595)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888899999999999999999976432110111101122222233333344444444455677889
Q ss_pred HHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHH
Q 001091 348 RVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFF-LYIHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (1159)
Q Consensus 348 riR~~L~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~-~~~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l~ 423 (1159)
++...+...+|+|.++++.. ..++|+++|++++|++++.+++ ..+..++..++.+++++++++.. .|..+++.++
T Consensus 92 ~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~-~~~l~li~l~ 170 (595)
T 2yl4_A 92 RIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFV-SPNLATFVLS 170 (595)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHH
Confidence 99999999999999998753 3489999999999999999765 45677778887777777666653 3355566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 001091 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR----LREIERDSLKKYLYTCS 499 (1159)
Q Consensus 424 ~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~----~R~~E~~~l~~~~~~~~ 499 (1159)
++++.+++...+.++.++..++..+..+++.+.+.|.++|+++||.|++|+.+.+++.+ .++.+.+..+.......
T Consensus 171 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (595)
T 2yl4_A 171 VVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFG 250 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677777888888999999999999999999999999999999999976666554 44444444333333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-CC
Q 001091 500 AIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQK-KP 578 (1159)
Q Consensus 500 ~~~~~~~~~~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~-~~ 578 (1159)
...++. ....+.+++++.+.+..+.+++|.+++++.+...+..|+..++..+..+.++.++.+|+.++++.+++. +.
T Consensus 251 ~~~~~~--~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 328 (595)
T 2yl4_A 251 ATGLSG--NLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFN 328 (595)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSS
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC
Confidence 222221 223344567888888889999999999999999999999999999999999999999999999876521 11
Q ss_pred CCCCCCCCCCcc-EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEE
Q 001091 579 ITEPTSKASDVA-IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1159)
Q Consensus 579 ~~~~~~~~~~~~-I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~ 656 (1159)
....+..+..+. |+++|++|+|+++ ++.++|+| |+++++||+++|+||+|||||||+++|+|+++|++|+| .
T Consensus 329 ~~~~~~~~~~~~~i~~~~v~~~y~~~-----~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i-~ 402 (595)
T 2yl4_A 329 EGVILNEKSFQGALEFKNVHFAYPAR-----PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI-S 402 (595)
T ss_dssp CSBCCCTTTCCCCEEEEEEEEECSSC-----TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEE-E
T ss_pred CCCCCCcCCCCCeEEEEEEEEEeCCC-----CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEE-E
Confidence 111111122356 9999999999753 23579999 99999999999999999999999999999999999999 9
Q ss_pred ECC-------------EEEEEecCCCCCCCcHHHHHhcCCC----CChHHHHHHHHHhccchHHHhccCCCCccccCCCC
Q 001091 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGKD----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1159)
Q Consensus 657 v~g-------------~iayv~Q~pwi~~gTIreNIlfG~~----~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~ 719 (1159)
++| +++||||+|++|++||+|||.+|.+ .++++++++++.++++++++.+|+|++|.+||+|.
T Consensus 403 ~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~ 482 (595)
T 2yl4_A 403 LDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGV 482 (595)
T ss_dssp ETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSC
T ss_pred ECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCC
Confidence 987 3899999999999999999999976 57889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEE
Q 001091 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1159)
Q Consensus 720 ~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e 799 (1159)
+|||||||||+||||++++|+|+||||||||||+++++.+ .+.++.+.+++|+|+|||+++.++.||+|++|++|+|++
T Consensus 483 ~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i-~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~ 561 (595)
T 2yl4_A 483 LLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLV-QEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITE 561 (595)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHH-HHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999997766 556777778999999999999999999999999999999
Q ss_pred ecChHHHHhhcchHHHHHHHHh
Q 001091 800 SGKYEDLIADQNSELVRQMKAH 821 (1159)
Q Consensus 800 ~Gt~~eL~~~~~~~~~~l~~~~ 821 (1159)
.|+|+|++++.++.|.++++.+
T Consensus 562 ~g~~~~l~~~~~~~~~~~~~~q 583 (595)
T 2yl4_A 562 YGKHEELLSKPNGIYRKLMNKQ 583 (595)
T ss_dssp EECSCC------C---------
T ss_pred ECCHHHHHhCCChHHHHHHHHh
Confidence 9999999873367787776544
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.9e-71 Score=738.38 Aligned_cols=550 Identities=18% Similarity=0.215 Sum_probs=398.6
Q ss_pred CChHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 263 TSLPQVIIH--AVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYF 340 (1159)
Q Consensus 263 ~sl~~~l~~--~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~ 340 (1159)
.++++.+.. .+++.++++.+...+........++++...++....+..+.... +..+++.+++..++..++.....+
T Consensus 738 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~i~~~~~~~ 816 (1321)
T 4f4c_A 738 TNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQ-GHFWALMFLVLAAAQGICSFLMTF 816 (1321)
T ss_dssp CCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTT-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345444432 34555555555555555555566677777777665433212222 333444444444444444333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCC--C---CChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhh
Q 001091 341 GANRIGIRVRSALTVLIYKRSMAIKFA--G---PSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLG 414 (1159)
Q Consensus 341 ~~~r~~~riR~~L~~~iy~K~L~ls~~--~---~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~pl~i~ia~~lL~~~lg 414 (1159)
...+.+.++...+...+|+|.++.+.. . .++|+++|+++.|++.+.+.+. .+..+....+.++.++++++. ++
T Consensus 817 ~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~-~~ 895 (1321)
T 4f4c_A 817 FMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFF-YG 895 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHH-HC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehH-Hh
Confidence 445666677777777888888887643 1 3799999999999999988664 445555555555555555443 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 001091 415 AAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKY 494 (1159)
Q Consensus 415 ~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~ 494 (1159)
|..+++.+++++++..+.....++..+...+..+...+......|.++|+++||.|++|+.+.++..+.-+...+...+.
T Consensus 896 ~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~ 975 (1321)
T 4f4c_A 896 WQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKE 975 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 24444444444444444444444444444555566677778889999999999999999999988877554443333322
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001091 495 LYTCSAIAFLFWASP--TLVSVITFGVCILLKTP--LTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFI 570 (1159)
Q Consensus 495 ~~~~~~~~~~~~~~~--~lv~~~~f~~~~~~~~~--Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL 570 (1159)
............... ..+.++.++.+.+..+. +.+..++.++..+.....|+..+......+.++..+.+|+.+++
T Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l 1055 (1321)
T 4f4c_A 976 AFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGML 1055 (1321)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222222211111111 12223445555555444 56677777777777777788888889999999999999999999
Q ss_pred cccCCCCCC-CCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 571 KEDNQKKPI-TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 571 ~~~e~~~~~-~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
+.+++.+.. ...+..+..+.|+|+|++|+|+++ ++.|+|+| ||+|+|||++|||||+|||||||+++|+|+|+
T Consensus 1056 ~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~-----~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1056 RKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPER-----PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp HCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTS-----CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred hCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCC-----CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc
Confidence 876522211 111222345689999999999876 45689999 99999999999999999999999999999999
Q ss_pred CCCCcEEEECC-------------EEEEEecCCCCCCCcHHHHHhcCC---CCChHHHHHHHHHhccchHHHhccCCCCc
Q 001091 649 RISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGK---DMRQSFYEEVLEGCALNQDIEMWADGDLS 712 (1159)
Q Consensus 649 ~~~G~i~~v~g-------------~iayv~Q~pwi~~gTIreNIlfG~---~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T 712 (1159)
|.+|+| .+|| +++||||+|+||+|||||||.||. +.++++.+++++.|+++++++.||+|++|
T Consensus 1131 p~~G~I-~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT 1209 (1321)
T 4f4c_A 1131 TLGGEI-FIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFET 1209 (1321)
T ss_dssp CSSSEE-EETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCS
T ss_pred CCCCEE-EECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCC
Confidence 999999 9998 489999999999999999999994 46789999999999999999999999999
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEE
Q 001091 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM 792 (1159)
Q Consensus 713 ~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl 792 (1159)
.|||+|.|||||||||||||||+++||+|+||||||||||++|++.| ++.++...+|||+|+||||++++.+||+|+||
T Consensus 1210 ~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~I-q~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vl 1288 (1321)
T 4f4c_A 1210 RVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVV-QEALDRAREGRTCIVIAHRLNTVMNADCIAVV 1288 (1321)
T ss_dssp EETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHH-HHHHTTTSSSSEEEEECSSSSTTTTCSEEEEE
T ss_pred EecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHH-HHHHHHHcCCCEEEEeccCHHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999998765 67899999999999999999999999999999
Q ss_pred eCCeEEEecChHHHHhhcchHHHHHHHHhh
Q 001091 793 KDGKIEQSGKYEDLIADQNSELVRQMKAHR 822 (1159)
Q Consensus 793 ~~G~I~e~Gt~~eL~~~~~~~~~~l~~~~~ 822 (1159)
++|+|+|+|+|+||++ +++.|.++++.|.
T Consensus 1289 d~G~IvE~Gth~eLl~-~~g~y~~L~~~Q~ 1317 (1321)
T 4f4c_A 1289 SNGTIIEKGTHTQLMS-EKGAYYKLTQKQM 1317 (1321)
T ss_dssp SSSSEEEEECHHHHHH-CC-----------
T ss_pred ECCEEEEECCHHHHHh-CCcHHHHHHHHHH
Confidence 9999999999999999 7899999987653
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.5e-61 Score=638.63 Aligned_cols=544 Identities=17% Similarity=0.222 Sum_probs=409.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 271 HAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSS-YHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRV 349 (1159)
Q Consensus 271 ~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~-~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~ri 349 (1159)
+.+|+.++.+.++.++..++..+.|+++..+++.......... ......++..+++..++..+......+...+.+.++
T Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~ 780 (1284)
T 3g5u_A 701 STEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEIL 780 (1284)
T ss_dssp HHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556777777788888888888888888887654322011 111112222222222223332222233345667777
Q ss_pred HHHHHHHHHHHHhcccCC-----CCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHH
Q 001091 350 RSALTVLIYKRSMAIKFA-----GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (1159)
Q Consensus 350 R~~L~~~iy~K~L~ls~~-----~~~~G~i~nlms~D~~~i~~~~~~-~~~~w~~pl~i~ia~~lL~~~lg~~~~l~~l~ 423 (1159)
...+...+|+|.++.+.. ..++|+++|++++|++.+.+.+.. +..+....+.++.++++++. ++|..+++.++
T Consensus 781 ~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~-~~~~l~lv~l~ 859 (1284)
T 3g5u_A 781 TKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLI-YGWQLTLLLLA 859 (1284)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCSSSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHH
Confidence 777778889998887642 348999999999999999887643 33344444444444444332 33334444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001091 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAF 503 (1159)
Q Consensus 424 ~~i~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~ 503 (1159)
++++++.+.....+...+...+..+..++..+...|.++|+++||.+++|+.+.++..+..+...+...+.....+....
T Consensus 860 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 939 (1284)
T 3g5u_A 860 IVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFS 939 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566666667777777777888888999999999999999999999888876544433322222222111111
Q ss_pred HHHH--HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC--C
Q 001091 504 LFWA--SPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP--I 579 (1159)
Q Consensus 504 ~~~~--~~~lv~~~~f~~~~~~~~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~--~ 579 (1159)
+... ....+.+++++.+.+..+.++.+.++.++..+.....|+..+......+.++..+.+|+.++++.+++.+. .
T Consensus 940 ~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~ 1019 (1284)
T 3g5u_A 940 FTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYST 1019 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccc
Confidence 1111 11223445567777777889999999888888888889988888888899999999999999987652211 1
Q ss_pred CCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEEC
Q 001091 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1159)
Q Consensus 580 ~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~ 658 (1159)
...+....++.|+++|++|+|++. ++.++|+| ||+|++||++|||||+|||||||+++|.|+++|.+|+| .++
T Consensus 1020 ~~~~~~~~~g~i~~~~v~~~y~~~-----~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I-~i~ 1093 (1284)
T 3g5u_A 1020 QGLKPNMLEGNVQFSGVVFNYPTR-----PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV-FLD 1093 (1284)
T ss_dssp SCCCTTTTSCCEEEEEEEBCCSCG-----GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEE-ESS
T ss_pred ccccccCCCCcEEEEEEEEECCCC-----CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE-EEC
Confidence 111112234679999999999864 33579999 99999999999999999999999999999999999999 888
Q ss_pred C-------------EEEEEecCCCCCCCcHHHHHhcCCC---CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCC
Q 001091 659 G-------------KKAYVPQSSWIQTGTIRENILFGKD---MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1159)
Q Consensus 659 g-------------~iayv~Q~pwi~~gTIreNIlfG~~---~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LS 722 (1159)
| +++||||+|.+|++||||||.+|.+ .++++.+++++.+++++.++.+|+|++|.|||+|.+||
T Consensus 1094 g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LS 1173 (1284)
T 3g5u_A 1094 GKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLS 1173 (1284)
T ss_dssp SSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSC
T ss_pred CEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccC
Confidence 7 4899999999999999999999975 46778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecC
Q 001091 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1159)
Q Consensus 723 GGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt 802 (1159)
|||||||+||||++++|+|+|||||||+||+++++.| ++.++...+|+|+|+|||+++++..||+|+||++|+|+|.|+
T Consensus 1174 gGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i-~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~ 1252 (1284)
T 3g5u_A 1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESEKVV-QEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGT 1252 (1284)
T ss_dssp HHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHH-HHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH-HHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999997765 566777778999999999999999999999999999999999
Q ss_pred hHHHHhhcchHHHHHHHHhhh
Q 001091 803 YEDLIADQNSELVRQMKAHRK 823 (1159)
Q Consensus 803 ~~eL~~~~~~~~~~l~~~~~~ 823 (1159)
|+|+++ .++.|.++++.+..
T Consensus 1253 ~~~l~~-~~g~y~~l~~~q~~ 1272 (1284)
T 3g5u_A 1253 HQQLLA-QKGIYFSMVSVQAG 1272 (1284)
T ss_dssp HHHHHH-SCSHHHHHHHHHC-
T ss_pred HHHHHh-CCCHHHHHHHHHhh
Confidence 999999 88999999887643
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.2e-54 Score=488.10 Aligned_cols=262 Identities=24% Similarity=0.420 Sum_probs=229.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCC-CCCCCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEE
Q 001091 552 LISMIAQTKVSLYRIQEFIKEDNQ-KKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVC 629 (1159)
Q Consensus 552 ~i~~~~~a~vs~~RI~~fL~~~e~-~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIv 629 (1159)
....+.++.++++|+.++++.++. .+.....+.....+.|+++|++|+|+.. .++|+| ||+|++||+++|+
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~-------~~vL~~isl~i~~Ge~vaiv 86 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADG-------RETLQDVSFTVMPGQTLALV 86 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTT-------CEEEEEEEEEECTTCEEEEE
T ss_pred cchhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCC-------CceeeeeeEEEcCCCEEEEE
Confidence 345677888999999999986542 1111111112234579999999999743 578999 9999999999999
Q ss_pred cCCCCChhHHHHHHhCCccCCCCcEEEECC-------------EEEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHH
Q 001091 630 GSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLE 695 (1159)
Q Consensus 630 G~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------------~iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ 695 (1159)
||+|||||||+++|+|+++|.+|+| .++| .++||+|+|++|++||+|||.||.+ .++++.+++++
T Consensus 87 G~sGsGKSTLl~ll~gl~~p~~G~I-~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~ 165 (306)
T 3nh6_A 87 GPSGAGKSTILRLLFRFYDISSGCI-RIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQ 165 (306)
T ss_dssp SSSCHHHHHHHHHHTTSSCCSEEEE-EETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHcCCCCCCcEE-EECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHH
Confidence 9999999999999999999999999 9988 3899999999999999999999975 57788999999
Q ss_pred HhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEE
Q 001091 696 GCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLY 775 (1159)
Q Consensus 696 ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIl 775 (1159)
.+++.++++.+|+|++|.+|++|.+|||||||||+||||++++|+|+||||||||||+++++.|. +.+..+.+++|+|+
T Consensus 166 ~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~-~~l~~l~~~~Tvi~ 244 (306)
T 3nh6_A 166 AAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQ-ASLAKVCANRTTIV 244 (306)
T ss_dssp HHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHH-HHHHHHHTTSEEEE
T ss_pred HhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHH-HHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999988875 46777778999999
Q ss_pred EccCcccccccCEEEEEeCCeEEEecChHHHHhhcchHHHHHHHHhhh
Q 001091 776 TTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRK 823 (1159)
Q Consensus 776 VTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~~l~~~~~~ 823 (1159)
|||+++.+..||+|++|++|+|++.|+++|+++ .++.|.+++..+..
T Consensus 245 itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~-~~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 245 VAHRLSTVVNADQILVIKDGCIVERGRHEALLS-RGGVYADMWQLQQG 291 (306)
T ss_dssp ECCSHHHHHTCSEEEEEETTEEEEEECHHHHHH-HTSHHHHHHHHHHC
T ss_pred EEcChHHHHcCCEEEEEECCEEEEECCHHHHHh-cChHHHHHHHHHHh
Confidence 999999999999999999999999999999998 78889998876653
No 12
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.8e-47 Score=416.71 Aligned_cols=219 Identities=38% Similarity=0.675 Sum_probs=199.1
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecC
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~ 667 (1159)
..|+++|++++|+.. ..++|++ ||++++||+++|+||+|||||||+++|+|.++|.+|+| .++|+++|+||+
T Consensus 5 ~~l~~~~l~~~y~~~------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~i~~v~q~ 77 (229)
T 2pze_A 5 TEVVMENVTAFWEEG------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-KHSGRISFCSQF 77 (229)
T ss_dssp EEEEEEEEEECSSTT------SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE-EECSCEEEECSS
T ss_pred ceEEEEEEEEEeCCC------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEE-EECCEEEEEecC
Confidence 469999999999642 3578999 99999999999999999999999999999999999999 999999999999
Q ss_pred CCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q 001091 668 SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1159)
Q Consensus 668 pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp 747 (1159)
|+++++|++|||.|+..+++.+++++++++++.++++.+|.+++|.+++++.+||||||||++||||++++|+++|||||
T Consensus 78 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEP 157 (229)
T 2pze_A 78 SWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 157 (229)
T ss_dssp CCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred CcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 99999999999999977777778889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHHHhhcchHHH
Q 001091 748 FSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815 (1159)
Q Consensus 748 ~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~ 815 (1159)
||+||+++.+.+.+.++..+.+++|+|+|||+++.+..||+|++|++|++++.|+++++.+ ....+.
T Consensus 158 ts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~ 224 (229)
T 2pze_A 158 FGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN-LQPDFS 224 (229)
T ss_dssp TTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHT-C--CHH
T ss_pred ccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHh-cChHHH
Confidence 9999999988877644445556899999999999988899999999999999999999987 433343
No 13
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=4.6e-47 Score=415.39 Aligned_cols=224 Identities=44% Similarity=0.849 Sum_probs=203.8
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCC
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~p 668 (1159)
.|+++|++++|+.. ..++|++ ||++++||+++|+||+|||||||+++|+|.++|.+|+| .++|+++||+|+|
T Consensus 3 ~l~~~~l~~~y~~~------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I-~~~g~i~~v~Q~~ 75 (237)
T 2cbz_A 3 SITVRNATFTWARS------DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV-AIKGSVAYVPQQA 75 (237)
T ss_dssp CEEEEEEEEESCTT------SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEE-EECSCEEEECSSC
T ss_pred eEEEEEEEEEeCCC------CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEEEEEcCCC
Confidence 38999999999642 2578999 99999999999999999999999999999999999999 9999999999999
Q ss_pred CCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCC
Q 001091 669 WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF 748 (1159)
Q Consensus 669 wi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~ 748 (1159)
++++.|++|||.++..+++++++++.+++++.+++..+|.|++|.+++++.+|||||||||+||||++++|+++||||||
T Consensus 76 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 155 (237)
T 2cbz_A 76 WIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 155 (237)
T ss_dssp CCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred cCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 99999999999999877777888999999999899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHH--hhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHHHhhcchHHHHHHHHh
Q 001091 749 SAVDAHTGTHLFKQCL--MGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAH 821 (1159)
Q Consensus 749 SALD~~t~~~if~~~i--~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~~l~~~~ 821 (1159)
|+||+.+.+.+.+... ..+.+|+|+|+|||+++.+..||+|++|++|+|++.|+++++.+ ....|.++...+
T Consensus 156 s~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 229 (237)
T 2cbz_A 156 SAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA-RDGAFAEFLRTY 229 (237)
T ss_dssp TTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHH-HTSHHHHHHHHT
T ss_pred cccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhh-ccHHHHHHHHHH
Confidence 9999999888766432 23446899999999999988899999999999999999999987 666777766543
No 14
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=4.2e-45 Score=402.14 Aligned_cols=224 Identities=26% Similarity=0.395 Sum_probs=202.0
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
..|+++|++++|+.. ..++|++ ||++++||+++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 6 ~~~~~~~l~~~y~~~------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I-~i~g~~~~~~~~ 78 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD------SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV-LIDGHDLALADP 78 (247)
T ss_dssp EEEEEEEEEEESSTT------SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEETTTSCH
T ss_pred CceeEEEEEEEeCCC------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEEhhhCCH
Confidence 469999999999531 2468999 99999999999999999999999999999999999999 8887
Q ss_pred -----EEEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHH
Q 001091 660 -----KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1159)
Q Consensus 660 -----~iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLAR 733 (1159)
.++||+|+|.++++|++|||.|+.+ .++++.+++++.+++.+.++.+|.|+++.+++++.+|||||||||+|||
T Consensus 79 ~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAr 158 (247)
T 2ff7_A 79 NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 158 (247)
T ss_dssp HHHHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHH
T ss_pred HHHHhcEEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHH
Confidence 3899999999999999999999864 4667788999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHHHhhcchH
Q 001091 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSE 813 (1159)
Q Consensus 734 Aly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~ 813 (1159)
|++++|+++|||||||+||+.+.+.+.+ .+..+.+|+|+|+|||+++.+..||+|++|++|++++.|+++|+.++..+.
T Consensus 159 aL~~~p~lllLDEPts~LD~~~~~~i~~-~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~ 237 (247)
T 2ff7_A 159 ALVNNPKILIFDEATSALDYESEHVIMR-NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237 (247)
T ss_dssp HHTTCCSEEEECCCCSCCCHHHHHHHHH-HHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCH
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchH
Confidence 9999999999999999999999887754 566665789999999999998889999999999999999999998722667
Q ss_pred HHHHHHH
Q 001091 814 LVRQMKA 820 (1159)
Q Consensus 814 ~~~l~~~ 820 (1159)
|.+++..
T Consensus 238 ~~~l~~~ 244 (247)
T 2ff7_A 238 YSYLYQL 244 (247)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7776643
No 15
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=7.2e-45 Score=403.30 Aligned_cols=224 Identities=26% Similarity=0.430 Sum_probs=200.8
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
..|+++|++|+|+.. ...++|++ ||++++|++++|+||+|||||||+++|+|.+++ +|+| .++|
T Consensus 16 ~~l~i~~l~~~y~~~-----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I-~i~g~~i~~~~~ 88 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQ-----TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDI-KIGGKNVNKYNR 88 (260)
T ss_dssp CCEEEEEEEECCTTC-----CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEE-EETTEEGGGBCH
T ss_pred CeEEEEEEEEEeCCC-----CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEE-EECCEEhhhcCH
Confidence 359999999999753 12468999 999999999999999999999999999999987 8999 8877
Q ss_pred -----EEEEEecCCCCCCCcHHHHHhcCCC-CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHH
Q 001091 660 -----KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1159)
Q Consensus 660 -----~iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLAR 733 (1159)
.++||+|+|.+|+.|++|||.|+.. .++++..++++.+++.+.++.+|+|.+|.+++++.+|||||||||+|||
T Consensus 89 ~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAr 168 (260)
T 2ghi_A 89 NSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIAR 168 (260)
T ss_dssp HHHHTTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHH
T ss_pred HHHhccEEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHH
Confidence 3899999999999999999999853 4566788899999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHHHhhcchH
Q 001091 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSE 813 (1159)
Q Consensus 734 Aly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~ 813 (1159)
|++++|+++|||||||+||+++.+.+. +.+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++++.+ ....
T Consensus 169 aL~~~p~lllLDEPts~LD~~~~~~i~-~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~-~~~~ 246 (260)
T 2ghi_A 169 CLLKDPKIVIFDEATSSLDSKTEYLFQ-KAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK-LNGE 246 (260)
T ss_dssp HHHHCCSEEEEECCCCTTCHHHHHHHH-HHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHH-HTSH
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHH-HHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHh-cChH
Confidence 999999999999999999999977664 56776667899999999999998899999999999999999999987 5667
Q ss_pred HHHHHHHh
Q 001091 814 LVRQMKAH 821 (1159)
Q Consensus 814 ~~~l~~~~ 821 (1159)
|.++...+
T Consensus 247 ~~~~~~~~ 254 (260)
T 2ghi_A 247 YAEMWNMQ 254 (260)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 77766543
No 16
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3.2e-45 Score=402.58 Aligned_cols=219 Identities=29% Similarity=0.457 Sum_probs=198.3
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|++|+|+.+ .++|++ ||++++||+++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 2 l~~~~l~~~y~~~-------~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~ 73 (243)
T 1mv5_A 2 LSARHVDFAYDDS-------EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI-TIDGQPIDNISLEN 73 (243)
T ss_dssp EEEEEEEECSSSS-------SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCE-EETTEESTTTSCSC
T ss_pred EEEEEEEEEeCCC-------CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEEhhhCCHHH
Confidence 7899999999522 468999 99999999999999999999999999999999999999 8876
Q ss_pred ---EEEEEecCCCCCCCcHHHHHhcC-C-CCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHH
Q 001091 660 ---KKAYVPQSSWIQTGTIRENILFG-K-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1159)
Q Consensus 660 ---~iayv~Q~pwi~~gTIreNIlfG-~-~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARA 734 (1159)
.++||+|+|.+|++|++|||.|+ . ..++++.+++++.+++.+.++.+|.|++|.+++++.+|||||||||+||||
T Consensus 74 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAra 153 (243)
T 1mv5_A 74 WRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARA 153 (243)
T ss_dssp CTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred HHhhEEEEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHH
Confidence 38999999999999999999998 3 356778889999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHHHhhcchHH
Q 001091 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814 (1159)
Q Consensus 735 ly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~ 814 (1159)
++++|+++|||||||+||+++.+.+.+ .+..+.+|+|+|+|||+++.+..||+|++|++|++++.|+++++.+ ....|
T Consensus 154 l~~~p~lllLDEPts~LD~~~~~~i~~-~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~ 231 (243)
T 1mv5_A 154 FLRNPKILMLDEATASLDSESESMVQK-ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA-THPLY 231 (243)
T ss_dssp HHHCCSEEEEECCSCSSCSSSCCHHHH-HHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHH-HCHHH
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHH-HHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh-ccHHH
Confidence 999999999999999999999887765 5665557999999999999888899999999999999999999987 55556
Q ss_pred HHHHH
Q 001091 815 VRQMK 819 (1159)
Q Consensus 815 ~~l~~ 819 (1159)
.+++.
T Consensus 232 ~~~~~ 236 (243)
T 1mv5_A 232 AKYVS 236 (243)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
No 17
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.1e-43 Score=396.03 Aligned_cols=224 Identities=25% Similarity=0.341 Sum_probs=197.9
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
..|+++|++++|+.. ...++|++ ||++++||+++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 15 ~~l~~~~l~~~y~~~-----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I-~~~g~~i~~~~~ 88 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNH-----PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV-LLDGEPLVQYDH 88 (271)
T ss_dssp CCEEEEEEEECCTTC-----TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEEGGGBCH
T ss_pred ceEEEEEEEEEeCCC-----CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEE-EECCEEcccCCH
Confidence 469999999999752 12568999 99999999999999999999999999999999999999 8887
Q ss_pred -----EEEEEecCCCCCCCcHHHHHhcCCCC-Ch-HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHH
Q 001091 660 -----KKAYVPQSSWIQTGTIRENILFGKDM-RQ-SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1159)
Q Consensus 660 -----~iayv~Q~pwi~~gTIreNIlfG~~~-d~-~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLA 732 (1159)
.++||+|+|.+++.||+|||.|+.+. .. ++..+.++...+.+.++.+|+|.++.+++++.+|||||||||+||
T Consensus 89 ~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lA 168 (271)
T 2ixe_A 89 HYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALA 168 (271)
T ss_dssp HHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHH
T ss_pred HHHhccEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHH
Confidence 38999999999999999999998643 22 455566677778888999999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccccccCEEEEEeCCeEEEecChHHHHhhc
Q 001091 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810 (1159)
Q Consensus 733 RAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~ 810 (1159)
||++++|+++|||||||+||+.+.+.+. +.+..+.+ |+|+|+|||+++.+..||+|++|++|+|++.|+++++.+ .
T Consensus 169 raL~~~p~lllLDEPts~LD~~~~~~i~-~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~-~ 246 (271)
T 2ixe_A 169 RALIRKPRLLILDNATSALDAGNQLRVQ-RLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME-R 246 (271)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHH-HHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHH-H
T ss_pred HHHhcCCCEEEEECCccCCCHHHHHHHH-HHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh-C
Confidence 9999999999999999999999987765 45666654 899999999999988899999999999999999999987 5
Q ss_pred chHHHHHHHH
Q 001091 811 NSELVRQMKA 820 (1159)
Q Consensus 811 ~~~~~~l~~~ 820 (1159)
...|.+++..
T Consensus 247 ~~~~~~~~~~ 256 (271)
T 2ixe_A 247 GGCYRSMVEA 256 (271)
T ss_dssp TSHHHHHHHC
T ss_pred cHHHHHHHHH
Confidence 6677776543
No 18
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=8.8e-44 Score=399.59 Aligned_cols=230 Identities=36% Similarity=0.630 Sum_probs=184.3
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHH
Q 001091 565 RIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSI 643 (1159)
Q Consensus 565 RI~~fL~~~e~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~l 643 (1159)
|+.+.++.+..... . .........++++|++|.+ .++|++ ||+|++|++++|+||+|||||||+++|
T Consensus 17 ~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~~l~~~~----------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l 84 (290)
T 2bbs_A 17 GFGELFEKAKQNNN-N-RKTSNGDDSLSFSNFSLLG----------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMI 84 (290)
T ss_dssp HHHHHHHHCC-------------------------C----------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHH
T ss_pred HHHHHhcccccccc-c-ccccCCCceEEEEEEEEcC----------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHH
Confidence 67777765542111 0 0111123469999999852 358999 999999999999999999999999999
Q ss_pred hCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCH
Q 001091 644 LGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1159)
Q Consensus 644 lGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSG 723 (1159)
.|.++|.+|+| .++|+++|++|+|+++++|++|||. +..+++.+++++++.+++.+.++.+|.+++|.+++++.+|||
T Consensus 85 ~Gl~~p~~G~I-~~~g~i~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSg 162 (290)
T 2bbs_A 85 MGELEPSEGKI-KHSGRISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSG 162 (290)
T ss_dssp TTSSCEEEEEE-ECCSCEEEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCH
T ss_pred hcCCCCCCcEE-EECCEEEEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCH
Confidence 99999999999 9999999999999999999999999 765566677888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecCh
Q 001091 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1159)
Q Consensus 724 GQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~ 803 (1159)
|||||++||||++++|+++|||||||+||+.+.+.+.+..+..+.+|+|+|+|||+++.+..||+|++|++|++++.|++
T Consensus 163 Gq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~ 242 (290)
T 2bbs_A 163 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTF 242 (290)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCH
Confidence 99999999999999999999999999999999888766434444468999999999999888999999999999999999
Q ss_pred HHHHh
Q 001091 804 EDLIA 808 (1159)
Q Consensus 804 ~eL~~ 808 (1159)
+++.+
T Consensus 243 ~~l~~ 247 (290)
T 2bbs_A 243 SELQN 247 (290)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 99876
No 19
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-43 Score=410.47 Aligned_cols=219 Identities=25% Similarity=0.327 Sum_probs=200.0
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-------
Q 001091 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1159)
Q Consensus 588 ~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g------- 659 (1159)
...|+++|++++|+.. ..++|++ ||+|++||+++|+|||||||||||++|.|+++ .+|+| .++|
T Consensus 17 ~~~i~~~~l~~~y~~~------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I-~i~G~~i~~~~ 88 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEG------GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEI-QIDGVSWDSIT 88 (390)
T ss_dssp SCCEEEEEEEEESSSS------SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEE-EESSCBTTSSC
T ss_pred CCeEEEEEEEEEecCC------CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEE-EECCEECCcCC
Confidence 3569999999999643 3578999 99999999999999999999999999999998 89999 8887
Q ss_pred ------EEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHH
Q 001091 660 ------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1159)
Q Consensus 660 ------~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLAR 733 (1159)
.++||+|++.+|.+|++|||.+.....+++.+++++.++|.+.++..|.+++|.++++|.+|||||||||+|||
T Consensus 89 ~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalAR 168 (390)
T 3gd7_A 89 LEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLAR 168 (390)
T ss_dssp HHHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHH
T ss_pred hHHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHH
Confidence 38999999999999999999977777788999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHHHhhcchH
Q 001091 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSE 813 (1159)
Q Consensus 734 Aly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~ 813 (1159)
|+.++|+++|||||||+||+++.+.+. +.++.+.+++|+|+|||+++.+..||+|++|++|+|++.|+++|+.++....
T Consensus 169 AL~~~P~lLLLDEPts~LD~~~~~~l~-~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~ 247 (390)
T 3gd7_A 169 SVLSKAKILLLDEPSAHLDPVTYQIIR-RTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADR 247 (390)
T ss_dssp HHHTTCCEEEEESHHHHSCHHHHHHHH-HHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBH
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCch
Confidence 999999999999999999999987765 4566666789999999999999889999999999999999999998844444
Q ss_pred HH
Q 001091 814 LV 815 (1159)
Q Consensus 814 ~~ 815 (1159)
|.
T Consensus 248 ~v 249 (390)
T 3gd7_A 248 FV 249 (390)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 20
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.7e-40 Score=367.38 Aligned_cols=200 Identities=24% Similarity=0.378 Sum_probs=172.3
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
..|+++|++++|+.. .++|+| ||++++||+++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 6 ~~l~i~~ls~~y~~~-------~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I-~~~G~~i~~~~~ 77 (275)
T 3gfo_A 6 YILKVEELNYNYSDG-------THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI-LFDNKPIDYSRK 77 (275)
T ss_dssp EEEEEEEEEEECTTS-------CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEE-EETTEECCCSHH
T ss_pred cEEEEEEEEEEECCC-------CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEE-EECCEECCcccc
Confidence 369999999999743 468999 99999999999999999999999999999999999999 8877
Q ss_pred -------EEEEEecCC--CCCCCcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCH
Q 001091 660 -------KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1159)
Q Consensus 660 -------~iayv~Q~p--wi~~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSG 723 (1159)
.+|||+|+| .+++.|++|||.|+.. .+ +++.+++++.++|.+.. .....+|||
T Consensus 78 ~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSg 146 (275)
T 3gfo_A 78 GIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLK-----------DKPTHCLSF 146 (275)
T ss_dssp HHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGT-----------TSBGGGSCH
T ss_pred cHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCCcccCCH
Confidence 389999998 5789999999998742 22 24566677777765322 245568999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEeCCeEEEe
Q 001091 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQS 800 (1159)
Q Consensus 724 GQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~ 800 (1159)
|||||++||||+..+|+++|||||||+||+.+.+.+++ .+..+. +|+|+|+|||+++.+. .||+|++|++|+|++.
T Consensus 147 GqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~-~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~ 225 (275)
T 3gfo_A 147 GQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMK-LLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQ 225 (275)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHH-HHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH-HHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999887765 566554 3899999999999986 5999999999999999
Q ss_pred cChHHHHh
Q 001091 801 GKYEDLIA 808 (1159)
Q Consensus 801 Gt~~eL~~ 808 (1159)
|+++|+.+
T Consensus 226 g~~~~~~~ 233 (275)
T 3gfo_A 226 GNPKEVFA 233 (275)
T ss_dssp ECHHHHTH
T ss_pred CCHHHHhc
Confidence 99999976
No 21
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.1e-40 Score=362.22 Aligned_cols=201 Identities=26% Similarity=0.358 Sum_probs=165.6
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|++++|+... ...++|++ ||++++||+++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 2 l~~~~l~~~y~~~~----~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I-~~~g~~~~~~~~~~ 76 (235)
T 3tif_A 2 VKLKNVTKTYKMGE----EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV-YIDNIKTNDLDDDE 76 (235)
T ss_dssp EEEEEEEEEEEETT----EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEECTTCCHHH
T ss_pred EEEEEEEEEeCCCC----cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE-EECCEEcccCCHHH
Confidence 78999999997530 12468999 99999999999999999999999999999999999999 8887
Q ss_pred -------EEEEEecCCCCCCC-cHHHHHhcCC------CCCh----HHHHHHHHHhccchHHHhccCCCCccccCCCCCC
Q 001091 660 -------KKAYVPQSSWIQTG-TIRENILFGK------DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1159)
Q Consensus 660 -------~iayv~Q~pwi~~g-TIreNIlfG~------~~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~L 721 (1159)
.++||+|+|.++.. |++|||.++. ..++ ++..++++.++|.+.. ......+|
T Consensus 77 ~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~L 146 (235)
T 3tif_A 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQL 146 (235)
T ss_dssp HHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGS
T ss_pred HHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----------hhCChhhC
Confidence 29999999998876 9999998752 1222 2334455555553321 13557789
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccccccCEEEEEeCCeEEE
Q 001091 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1159)
Q Consensus 722 SGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e 799 (1159)
|||||||++||||+.++|+++|||||||+||+.+.+.+.+ .+..+.+ |+|+|+|||+++....||+|++|++|+|++
T Consensus 147 SgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~-~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~ 225 (235)
T 3tif_A 147 SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQ-LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225 (235)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999888765 4655543 899999999999888899999999999999
Q ss_pred ecChHHHH
Q 001091 800 SGKYEDLI 807 (1159)
Q Consensus 800 ~Gt~~eL~ 807 (1159)
.|+.+++.
T Consensus 226 ~~~~~~~~ 233 (235)
T 3tif_A 226 EEKLRGFD 233 (235)
T ss_dssp EEECC---
T ss_pred EcChhhhc
Confidence 99877753
No 22
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=3.8e-40 Score=377.89 Aligned_cols=210 Identities=23% Similarity=0.332 Sum_probs=175.9
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-------
Q 001091 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1159)
Q Consensus 588 ~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g------- 659 (1159)
+..|+++|++++|+... ...++|+| ||+|++||+++|+||||||||||+++|.|.++|++|+| .++|
T Consensus 22 ~~mi~v~~ls~~y~~~~----~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I-~i~G~~i~~~~ 96 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGT----RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSV-LVDGQELTTLS 96 (366)
T ss_dssp -CCEEEEEEEEEEECSS----SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE-EETTEECSSCC
T ss_pred CceEEEEeEEEEeCCCC----CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEE-EECCEECCcCC
Confidence 34699999999997530 12468999 99999999999999999999999999999999999999 8877
Q ss_pred ---------EEEEEecCCCCCCC-cHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCC
Q 001091 660 ---------KKAYVPQSSWIQTG-TIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1159)
Q Consensus 660 ---------~iayv~Q~pwi~~g-TIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LS 722 (1159)
.||||+|+|.++.. ||+|||.|+.. .+ +++.+++++.++|.+..+ ....+||
T Consensus 97 ~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~-----------~~~~~LS 165 (366)
T 3tui_C 97 ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-----------SYPSNLS 165 (366)
T ss_dssp HHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT-----------CCTTTSC
T ss_pred HHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhc-----------CChhhCC
Confidence 38999999988764 99999998632 22 245666777777754322 3456899
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccc-cCEEEEEeCCeEEE
Q 001091 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1159)
Q Consensus 723 GGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e 799 (1159)
|||||||+||||+..+|+++||||||||||+.+.+.+++ .++.+. .|+|+|+|||+++.+.. ||+|++|++|+|++
T Consensus 166 GGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~-lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~ 244 (366)
T 3tui_C 166 GGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE-LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE 244 (366)
T ss_dssp HHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999888765 566553 38999999999999764 99999999999999
Q ss_pred ecChHHHHhhcchHH
Q 001091 800 SGKYEDLIADQNSEL 814 (1159)
Q Consensus 800 ~Gt~~eL~~~~~~~~ 814 (1159)
.|+.+|+..+....+
T Consensus 245 ~g~~~ev~~~p~~~~ 259 (366)
T 3tui_C 245 QDTVSEVFSHPKTPL 259 (366)
T ss_dssp CCBHHHHHSSCCSHH
T ss_pred EcCHHHHHhCCCcHH
Confidence 999999987444344
No 23
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.1e-39 Score=373.97 Aligned_cols=206 Identities=27% Similarity=0.382 Sum_probs=174.1
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.|+++|++++|++ .++|+| ||++++||+++|+|||||||||||++|.|+.+|++|+| .++|
T Consensus 4 ~l~i~~ls~~y~~--------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I-~i~G~~i~~~~~~ 74 (359)
T 3fvq_A 4 ALHIGHLSKSFQN--------TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI-SLSGKTIFSKNTN 74 (359)
T ss_dssp CEEEEEEEEEETT--------EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEE-EETTEEEESSSCB
T ss_pred EEEEEeEEEEECC--------EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEE-EECCEECcccccc
Confidence 4899999999963 468999 99999999999999999999999999999999999999 8776
Q ss_pred ------EEEEEecCCCCCC-CcHHHHHhcCCCC-------ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHH
Q 001091 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM-------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1159)
Q Consensus 660 ------~iayv~Q~pwi~~-gTIreNIlfG~~~-------d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQ 725 (1159)
.+|||+|++-+|. .||+|||.||... .+++.+++++.++|.+..+ .+..+|||||
T Consensus 75 ~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------r~~~~LSGGq 143 (359)
T 3fvq_A 75 LPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAG-----------RYPHELSGGQ 143 (359)
T ss_dssp CCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTT-----------SCGGGSCHHH
T ss_pred cchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhc-----------CChhhCCHHH
Confidence 3899999998875 6999999998542 1345667777777754333 3446899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCcccc-cccCEEEEEeCCeEEEecCh
Q 001091 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKY 803 (1159)
Q Consensus 726 KQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~-l~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~ 803 (1159)
||||+||||+..+|+++|||||||+||+...+.+.+...+-. ..|+|+|+|||+++.+ ..||+|++|++|+|++.|++
T Consensus 144 ~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~ 223 (359)
T 3fvq_A 144 QQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASP 223 (359)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCH
Confidence 999999999999999999999999999999888866543322 2489999999999886 55999999999999999999
Q ss_pred HHHHhhcchHHH
Q 001091 804 EDLIADQNSELV 815 (1159)
Q Consensus 804 ~eL~~~~~~~~~ 815 (1159)
+|+.++....+.
T Consensus 224 ~el~~~p~~~~~ 235 (359)
T 3fvq_A 224 HELYRQPADLDA 235 (359)
T ss_dssp HHHHHSCSCHHH
T ss_pred HHHHhCcccHHH
Confidence 999874444443
No 24
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-39 Score=356.82 Aligned_cols=199 Identities=22% Similarity=0.346 Sum_probs=167.2
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.++++|++++|+. .++|++ ||++++||+++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 6 ~l~~~~l~~~y~~--------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 76 (240)
T 1ji0_A 6 VLEVQSLHVYYGA--------IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI-IFNGQDITNKPAH 76 (240)
T ss_dssp EEEEEEEEEEETT--------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEECTTCCHH
T ss_pred eEEEEeEEEEECC--------eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCCCCHH
Confidence 5899999999963 468999 99999999999999999999999999999999999999 8876
Q ss_pred -----EEEEEecCCCCCCC-cHHHHHhcCC-C-CChH----HHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHH
Q 001091 660 -----KKAYVPQSSWIQTG-TIRENILFGK-D-MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1159)
Q Consensus 660 -----~iayv~Q~pwi~~g-TIreNIlfG~-~-~d~~----~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQ 727 (1159)
.++|++|+|.++.+ |++|||.++. + .+++ +.+++++.. + |.....+.+..+|||||||
T Consensus 77 ~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~---------~-~l~~~~~~~~~~LSgGq~q 146 (240)
T 1ji0_A 77 VINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLF---------P-RLKERLKQLGGTLSGGEQQ 146 (240)
T ss_dssp HHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHC---------H-HHHTTTTSBSSSSCHHHHH
T ss_pred HHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHc---------c-cHhhHhcCChhhCCHHHHH
Confidence 28999999998876 9999999874 1 1222 223333332 1 1222345678899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccc-cccCEEEEEeCCeEEEecChHH
Q 001091 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYED 805 (1159)
Q Consensus 728 RIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~e 805 (1159)
|++||||++++|+++|||||||+||+++.+.+.+ .++.+. +|+|+|+|||+++.+ ..||+|++|++|++++.|++++
T Consensus 147 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 225 (240)
T 1ji0_A 147 MLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFE-VIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASE 225 (240)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999887765 565554 689999999999876 5699999999999999999999
Q ss_pred HHh
Q 001091 806 LIA 808 (1159)
Q Consensus 806 L~~ 808 (1159)
+.+
T Consensus 226 ~~~ 228 (240)
T 1ji0_A 226 LLD 228 (240)
T ss_dssp HHT
T ss_pred Hhc
Confidence 875
No 25
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=6.6e-39 Score=356.82 Aligned_cols=202 Identities=23% Similarity=0.335 Sum_probs=172.7
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|++++|+.+. ....++|++ ||++++||+++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 3 l~~~~l~~~y~~~~---~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I-~~~g~~~~~~~~~~ 78 (266)
T 2yz2_A 3 IEVVNVSHIFHRGT---PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV-LYDGERKKGYEIRR 78 (266)
T ss_dssp EEEEEEEEEESTTS---TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEECCHHHHGG
T ss_pred EEEEEEEEEecCCC---ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE-EECCEECchHHhhh
Confidence 78999999996220 001468999 99999999999999999999999999999999999999 8887
Q ss_pred EEEEEecCC--CCCCCcHHHHHhcCCCC------ChHHHHHHHHHhccc--hHHHhccCCCCccccCCCCCCCHHHHHHH
Q 001091 660 KKAYVPQSS--WIQTGTIRENILFGKDM------RQSFYEEVLEGCALN--QDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1159)
Q Consensus 660 ~iayv~Q~p--wi~~gTIreNIlfG~~~------d~~~y~~vl~ac~L~--~dl~~lp~Gd~T~IGe~G~~LSGGQKQRI 729 (1159)
.++||+|+| .+++.|++|||.|+... .+++.+++++.++|. +..+.. ..+||||||||+
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----------~~~LSgGq~qRv 147 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRV-----------PFFLSGGEKRRV 147 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCC-----------GGGSCHHHHHHH
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCC-----------hhhCCHHHHHHH
Confidence 389999996 57889999999987421 245678888888887 443333 368999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHHHH
Q 001091 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807 (1159)
Q Consensus 730 aLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~ 807 (1159)
+||||+.++|+++|||||||+||+++.+.+.+ .++.+. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 226 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLR-IVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFL 226 (266)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHHcCCCEEEEcCccccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999887765 565553 58999999999999865 9999999999999999999987
Q ss_pred h
Q 001091 808 A 808 (1159)
Q Consensus 808 ~ 808 (1159)
+
T Consensus 227 ~ 227 (266)
T 2yz2_A 227 E 227 (266)
T ss_dssp H
T ss_pred c
Confidence 6
No 26
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2e-39 Score=374.24 Aligned_cols=205 Identities=27% Similarity=0.407 Sum_probs=174.9
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.|+++|++++|+. ..+|+| ||++++||+++|+|||||||||||++|.|.++|++|+| .++|
T Consensus 3 ~l~~~~l~~~yg~--------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I-~i~G~~~~~~~~~ 73 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--------VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL-FIGEKRMNDTPPA 73 (381)
T ss_dssp CEEEEEEEEEETT--------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE-EETTEECTTCCGG
T ss_pred EEEEEeEEEEECC--------EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEE-EECCEECCCCCHH
Confidence 4899999999963 468999 99999999999999999999999999999999999999 8887
Q ss_pred --EEEEEecCCCCCC-CcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHH
Q 001091 660 --KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1159)
Q Consensus 660 --~iayv~Q~pwi~~-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRI 729 (1159)
.++||+|++-+|. .||+|||.||.. .+ +++.+++++.++|.+..+ .+..+|||||||||
T Consensus 74 ~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------r~p~~LSGGqrQRV 142 (381)
T 3rlf_A 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRV 142 (381)
T ss_dssp GSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-----------CCGGGSCHHHHHHH
T ss_pred HCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhHCCHHHHHHH
Confidence 3899999998875 599999999742 22 345667777777765433 33468999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccc-cccCEEEEEeCCeEEEecChHHH
Q 001091 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDL 806 (1159)
Q Consensus 730 aLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL 806 (1159)
+||||+..+|+++|||||||+||+...+.+.+. ++.+.+ |+|+|+|||+++.+ ..||+|++|++|+|++.|+++|+
T Consensus 143 aiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~-l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l 221 (381)
T 3rlf_A 143 AIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE-ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221 (381)
T ss_dssp HHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHH-HHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHH
Confidence 999999999999999999999999998887654 555543 89999999999876 56999999999999999999999
Q ss_pred HhhcchHHH
Q 001091 807 IADQNSELV 815 (1159)
Q Consensus 807 ~~~~~~~~~ 815 (1159)
.++....|.
T Consensus 222 ~~~p~~~~v 230 (381)
T 3rlf_A 222 YHYPADRFV 230 (381)
T ss_dssp HHCCSBHHH
T ss_pred HhCCccHHH
Confidence 874444443
No 27
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=6.6e-39 Score=355.27 Aligned_cols=198 Identities=28% Similarity=0.364 Sum_probs=169.9
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.|+++|++++|++ .++|+| ||++++||+++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 24 ~l~i~~l~~~y~~--------~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I-~~~g~~i~~~~~~ 94 (263)
T 2olj_A 24 MIDVHQLKKSFGS--------LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI-IIDGINLKAKDTN 94 (263)
T ss_dssp SEEEEEEEEEETT--------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE-EETTEESSSTTCC
T ss_pred eEEEEeEEEEECC--------EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE-EECCEECCCcccc
Confidence 5999999999953 468999 99999999999999999999999999999999999999 8876
Q ss_pred ------EEEEEecCCCCCCC-cHHHHHhcCC----CCC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHH
Q 001091 660 ------KKAYVPQSSWIQTG-TIRENILFGK----DMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1159)
Q Consensus 660 ------~iayv~Q~pwi~~g-TIreNIlfG~----~~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGG 724 (1159)
.++||+|++.++.. |++|||.|+. ..+ +++.+++++.++|.+.. .....+||||
T Consensus 95 ~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgG 163 (263)
T 2olj_A 95 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKA-----------HAYPDSLSGG 163 (263)
T ss_dssp HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGT-----------TSCGGGSCHH
T ss_pred HHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCChhhCCHH
Confidence 28999999988776 9999999853 122 23456667777665432 3446789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEEEeCCeEEEecC
Q 001091 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGK 802 (1159)
Q Consensus 725 QKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt 802 (1159)
||||++||||+..+|+++|||||||+||+.+.+.+.+ .+..+. +|+|+|+|||+++.+. .||+|++|++|+|++.|+
T Consensus 164 qkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~-~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 242 (263)
T 2olj_A 164 QAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLS-VMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGK 242 (263)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999887754 565553 4899999999999876 599999999999999999
Q ss_pred hHHHHh
Q 001091 803 YEDLIA 808 (1159)
Q Consensus 803 ~~eL~~ 808 (1159)
.+++.+
T Consensus 243 ~~~~~~ 248 (263)
T 2olj_A 243 PEDLFD 248 (263)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999876
No 28
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.7e-39 Score=349.89 Aligned_cols=192 Identities=23% Similarity=0.300 Sum_probs=163.3
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.|+++|++++|++ .++|+| ||++++||+++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 4 ~l~~~~l~~~y~~--------~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 74 (224)
T 2pcj_A 4 ILRAENIKKVIRG--------YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV-FLEGKEVDYTNEK 74 (224)
T ss_dssp EEEEEEEEEEETT--------EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEE-EETTEECCSSCHH
T ss_pred EEEEEeEEEEECC--------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEECCCCCHH
Confidence 4899999999963 468999 99999999999999999999999999999999999999 8765
Q ss_pred --------EEEEEecCCCCCC-CcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCH
Q 001091 660 --------KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1159)
Q Consensus 660 --------~iayv~Q~pwi~~-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSG 723 (1159)
.++||+|+|.++. .|++|||.++.. .+ +++.+++++.++|.+. ...+..+|||
T Consensus 75 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSg 143 (224)
T 2pcj_A 75 ELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDK-----------LSRKPYELSG 143 (224)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTC-----------TTCCGGGSCH
T ss_pred HHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCH
Confidence 2899999998875 699999988632 11 2345566666665432 2344568999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEEEEEeCCeEEEecC
Q 001091 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1159)
Q Consensus 724 GQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt 802 (1159)
|||||++||||+.++|+++|||||||+||+++.+.+.+ .+..+. +|+|+|+|||+++.+..||+|++|++|++++.|+
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~-~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 144 GEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMD-IFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 99999999999999999999999999999999887764 565553 4899999999999887899999999999999886
No 29
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=5.2e-39 Score=354.70 Aligned_cols=198 Identities=27% Similarity=0.393 Sum_probs=169.8
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCC
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~p 668 (1159)
.++++|++++|+.+ .++|++ ||++++||.++|+||+|||||||+++|.|.++|.+|+| .....++||+|+|
T Consensus 4 ~l~i~~l~~~y~~~-------~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I-~~~~~i~~v~q~~ 75 (253)
T 2nq2_C 4 ALSVENLGFYYQAE-------NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-EVYQSIGFVPQFF 75 (253)
T ss_dssp EEEEEEEEEEETTT-------TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEE-EECSCEEEECSCC
T ss_pred eEEEeeEEEEeCCC-------CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EEeccEEEEcCCC
Confidence 48999999999622 468999 99999999999999999999999999999999999999 7888899999999
Q ss_pred CCC-CCcHHHHHhcCCC-C-------C---hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 001091 669 WIQ-TGTIRENILFGKD-M-------R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1159)
Q Consensus 669 wi~-~gTIreNIlfG~~-~-------d---~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly 736 (1159)
.++ +.|++|||.++.. . . +++.+++++..+|.+.. ..+..+||||||||++||||++
T Consensus 76 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv~lAraL~ 144 (253)
T 2nq2_C 76 SSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLA-----------KREFTSLSGGQRQLILIARAIA 144 (253)
T ss_dssp CCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGT-----------TSBGGGSCHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHh-----------cCChhhCCHHHHHHHHHHHHHH
Confidence 887 7799999998742 1 1 24556677766665432 2356799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-C-CcEEEEEccCcccc-cccCEEEEEeCCeEEEecChHHHHh
Q 001091 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 737 ~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~-~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
++|+++|||||||+||+++.+.+.+ .+..+. + |+|+|++||+++.+ ..||+|++|++|+ ++.|+++++.+
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 145 SECKLILLDEPTSALDLANQDIVLS-LLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp TTCSEEEESSSSTTSCHHHHHHHHH-HHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 9999999999999999999887755 565554 3 89999999999987 5699999999999 99999999865
No 30
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=6.5e-39 Score=355.89 Aligned_cols=198 Identities=26% Similarity=0.385 Sum_probs=170.2
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.|+++|++++|+. .++|+| ||++++||+++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 6 ~l~i~~l~~~y~~--------~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 76 (262)
T 1b0u_A 6 KLHVIDLHKRYGG--------HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI-IVNGQNINLVRDK 76 (262)
T ss_dssp CEEEEEEEEEETT--------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE-EETTEECCEEECT
T ss_pred eEEEeeEEEEECC--------EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEEccccccc
Confidence 4899999999953 468999 99999999999999999999999999999999999999 7765
Q ss_pred -----------------EEEEEecCCCCCCC-cHHHHHhcCC----CCC----hHHHHHHHHHhccchH-HHhccCCCCc
Q 001091 660 -----------------KKAYVPQSSWIQTG-TIRENILFGK----DMR----QSFYEEVLEGCALNQD-IEMWADGDLS 712 (1159)
Q Consensus 660 -----------------~iayv~Q~pwi~~g-TIreNIlfG~----~~d----~~~y~~vl~ac~L~~d-l~~lp~Gd~T 712 (1159)
.++||+|++.++.. |++|||.++. ..+ +++.+++++..+|.+. .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-------- 148 (262)
T 1b0u_A 77 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG-------- 148 (262)
T ss_dssp TSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT--------
T ss_pred cccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhc--------
Confidence 28999999988765 9999999853 122 2456677777777654 32
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEE
Q 001091 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVL 790 (1159)
Q Consensus 713 ~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Ii 790 (1159)
.+..+||||||||++||||+.++|+++|||||||+||+++.+.+.+ .+..+. +|+|+|+|||+++.+. .||+|+
T Consensus 149 ---~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~-~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~ 224 (262)
T 1b0u_A 149 ---KYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVI 224 (262)
T ss_dssp ---SCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHTTCCEEEECSCHHHHHHHCSEEE
T ss_pred ---CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 3456899999999999999999999999999999999999887765 565553 4899999999999875 599999
Q ss_pred EEeCCeEEEecChHHHHh
Q 001091 791 VMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 791 vl~~G~I~e~Gt~~eL~~ 808 (1159)
+|++|++++.|+++++.+
T Consensus 225 ~l~~G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 225 FLHQGKIEEEGDPEQVFG 242 (262)
T ss_dssp EEETTEEEEEECHHHHHH
T ss_pred EEECCEEEEeCCHHHHHh
Confidence 999999999999999976
No 31
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1e-38 Score=352.53 Aligned_cols=199 Identities=23% Similarity=0.302 Sum_probs=170.9
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
+.|+++|++++|+. .++|++ ||++++||+++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 14 ~~l~i~~l~~~y~~--------~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I-~~~g~~~~~~~~ 84 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK--------KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV-TVFGKNVVEEPH 84 (256)
T ss_dssp CCEEEEEEEEEETT--------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE-EETTEETTTCHH
T ss_pred CeEEEEEEEEEECC--------EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEECCccHH
Confidence 46999999999953 468999 99999999999999999999999999999999999999 8877
Q ss_pred ----EEEEEecCCCCCCC-cHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHH
Q 001091 660 ----KKAYVPQSSWIQTG-TIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1159)
Q Consensus 660 ----~iayv~Q~pwi~~g-TIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQ 727 (1159)
.++|++|+|.++.. |++||+.++.. .+ +++.+++++.++|.+.. ..+..+|||||||
T Consensus 85 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGq~q 153 (256)
T 1vpl_A 85 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI-----------KDRVSTYSKGMVR 153 (256)
T ss_dssp HHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGG-----------GSBGGGCCHHHHH
T ss_pred HHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHh-----------cCChhhCCHHHHH
Confidence 38999999988776 99999988531 22 23556677777765433 2345689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHH
Q 001091 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1159)
Q Consensus 728 RIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~e 805 (1159)
|++||||+.++|+++|||||||+||+.+.+.+.+ .+..+. +|+|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 232 (256)
T 1vpl_A 154 KLLIARALMVNPRLAILDEPTSGLDVLNAREVRK-ILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEE 232 (256)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHH-HHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999887754 565553 58999999999999866 99999999999999999999
Q ss_pred HHh
Q 001091 806 LIA 808 (1159)
Q Consensus 806 L~~ 808 (1159)
+.+
T Consensus 233 ~~~ 235 (256)
T 1vpl_A 233 LKE 235 (256)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 32
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1e-38 Score=353.72 Aligned_cols=195 Identities=24% Similarity=0.323 Sum_probs=165.6
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.|+++|++++|++ .++|+| ||++++||+++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 7 ~l~i~~l~~~y~~--------~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 77 (257)
T 1g6h_A 7 ILRTENIVKYFGE--------FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV-YFENKDITNKEPA 77 (257)
T ss_dssp EEEEEEEEEEETT--------EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEECTTCCHH
T ss_pred EEEEeeeEEEECC--------EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCHH
Confidence 5899999999963 468999 99999999999999999999999999999999999999 8876
Q ss_pred -----EEEEEecCCCCCC-CcHHHHHhcCCCC----------------C----hHHHHHHHHHhccchHHHhccCCCCcc
Q 001091 660 -----KKAYVPQSSWIQT-GTIRENILFGKDM----------------R----QSFYEEVLEGCALNQDIEMWADGDLSV 713 (1159)
Q Consensus 660 -----~iayv~Q~pwi~~-gTIreNIlfG~~~----------------d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~ 713 (1159)
.++||+|+|.++. .|++|||.++... + +++.+++++.++|. ..
T Consensus 78 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~ 146 (257)
T 1g6h_A 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-----------HL 146 (257)
T ss_dssp HHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-----------GG
T ss_pred HHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCc-----------hh
Confidence 2899999998775 7999999987422 1 12334445544443 23
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCccccc-ccCEEEE
Q 001091 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLV 791 (1159)
Q Consensus 714 IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~-~aD~Iiv 791 (1159)
...+..+||||||||++||||+.++|+++|||||||+||+.+.+.+.+ .++.+. +|+|+|+|||+++.+. .||+|++
T Consensus 147 ~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~ 225 (257)
T 1g6h_A 147 YDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN-HVLELKAKGITFLIIEHRLDIVLNYIDHLYV 225 (257)
T ss_dssp TTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCCSTTGGGCSEEEE
T ss_pred hCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEE
Confidence 445677999999999999999999999999999999999999887765 565543 4899999999999875 6999999
Q ss_pred EeCCeEEEecChHH
Q 001091 792 MKDGKIEQSGKYED 805 (1159)
Q Consensus 792 l~~G~I~e~Gt~~e 805 (1159)
|++|++++.|++++
T Consensus 226 l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 226 MFNGQIIAEGRGEE 239 (257)
T ss_dssp EETTEEEEEEESHH
T ss_pred EECCEEEEEeCHHH
Confidence 99999999999998
No 33
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-38 Score=366.09 Aligned_cols=204 Identities=24% Similarity=0.302 Sum_probs=174.3
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.|+++|++++|++ .++|++ ||++++||+++|+|||||||||||++|.|..+|++|+| .++|
T Consensus 3 ~l~~~~l~~~y~~--------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I-~i~g~~i~~~~~~ 73 (359)
T 2yyz_A 3 SIRVVNLKKYFGK--------VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI-YFDDVLVNDIPPK 73 (359)
T ss_dssp CEEEEEEEEEETT--------EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE-EETTEECTTSCGG
T ss_pred EEEEEEEEEEECC--------EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEE-EECCEECCCCChh
Confidence 3899999999953 468999 99999999999999999999999999999999999999 8877
Q ss_pred --EEEEEecCCCCCC-CcHHHHHhcCCCC-------ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHH
Q 001091 660 --KKAYVPQSSWIQT-GTIRENILFGKDM-------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1159)
Q Consensus 660 --~iayv~Q~pwi~~-gTIreNIlfG~~~-------d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRI 729 (1159)
.++||+|++.+|. .|++|||.||... .+++.+++++.++|.+..+.. ..+|||||||||
T Consensus 74 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-----------~~~LSgGq~QRv 142 (359)
T 2yyz_A 74 YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRK-----------PTQLSGGQQQRV 142 (359)
T ss_dssp GTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSC-----------GGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCC-----------hhhCCHHHHHHH
Confidence 3899999998875 5999999998542 134677888888876544433 358999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccc-cccCEEEEEeCCeEEEecChHHH
Q 001091 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDL 806 (1159)
Q Consensus 730 aLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL 806 (1159)
+||||+.++|+++|||||||+||++..+.+.+ .++.+.+ |+|+|+|||+++.+ ..||+|++|++|+|++.|+++|+
T Consensus 143 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~-~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 221 (359)
T 2yyz_A 143 ALARALVKQPKVLLFDEPLSNLDANLRMIMRA-EIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221 (359)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999887655 4555543 89999999999886 56999999999999999999999
Q ss_pred HhhcchHH
Q 001091 807 IADQNSEL 814 (1159)
Q Consensus 807 ~~~~~~~~ 814 (1159)
.++....|
T Consensus 222 ~~~p~~~~ 229 (359)
T 2yyz_A 222 YDSPKNMF 229 (359)
T ss_dssp HHSCSBHH
T ss_pred HhCcccHH
Confidence 87333333
No 34
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.1e-38 Score=354.58 Aligned_cols=199 Identities=25% Similarity=0.366 Sum_probs=171.4
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE-------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~------- 660 (1159)
..++++|++++|+. .++|++ ||++++||+++|+||+|||||||+++|.|.++|++|+| .++|.
T Consensus 10 ~~l~~~~l~~~~~~--------~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I-~~~g~~~~~~~~ 80 (266)
T 4g1u_C 10 ALLEASHLHYHVQQ--------QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGEC-HLLGQNLNSWQP 80 (266)
T ss_dssp CEEEEEEEEEEETT--------EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEE-EETTEETTTSCH
T ss_pred ceEEEEeEEEEeCC--------eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE-EECCEECCcCCH
Confidence 35899999999963 478999 99999999999999999999999999999999999999 88873
Q ss_pred ------EEEEecCCCC-CCCcHHHHHhcCCC-----CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHH
Q 001091 661 ------KAYVPQSSWI-QTGTIRENILFGKD-----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1159)
Q Consensus 661 ------iayv~Q~pwi-~~gTIreNIlfG~~-----~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQR 728 (1159)
++|++|++-+ ++.|++||+.++.. .++++.+++++.++|.+..+ ....+||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~QR 149 (266)
T 4g1u_C 81 KALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQ-----------RDYRVLSGGEQQR 149 (266)
T ss_dssp HHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTT-----------SBGGGCCHHHHHH
T ss_pred HHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHHHHHH
Confidence 8999999876 77899999998753 22456677777777654222 2345799999999
Q ss_pred HHHHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEeCCeEEE
Q 001091 729 IQLARAVYS------NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1159)
Q Consensus 729 IaLARAly~------~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e 799 (1159)
++||||+.+ +|+++|||||||+||+.+.+.+.+ .++.+. .++|+|+|||+++.+. .||+|++|++|+|++
T Consensus 150 v~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~-~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~ 228 (266)
T 4g1u_C 150 VQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLR-LLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVA 228 (266)
T ss_dssp HHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHH-HHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHH-HHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999 999999999999999999887765 565554 2579999999999875 599999999999999
Q ss_pred ecChHHHHh
Q 001091 800 SGKYEDLIA 808 (1159)
Q Consensus 800 ~Gt~~eL~~ 808 (1159)
.|+++|+.+
T Consensus 229 ~g~~~~~~~ 237 (266)
T 4g1u_C 229 CGTPEEVLN 237 (266)
T ss_dssp EECHHHHCC
T ss_pred EcCHHHHhC
Confidence 999999875
No 35
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=9.7e-39 Score=366.55 Aligned_cols=207 Identities=28% Similarity=0.391 Sum_probs=174.1
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-------
Q 001091 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1159)
Q Consensus 588 ~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g------- 659 (1159)
...|+++|++++|+.+ .++|+| ||++++||+++|+|||||||||||++|.|..+|++|+| .++|
T Consensus 12 ~~~l~~~~l~~~y~g~-------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I-~i~g~~i~~~~ 83 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGG-------ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV-WIGGKRVTDLP 83 (355)
T ss_dssp CEEEEEEEEEECCTTS-------TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE-EETTEECTTCC
T ss_pred CceEEEEEEEEEEcCC-------CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEE-EECCEECCcCC
Confidence 3569999999999422 468999 99999999999999999999999999999999999999 8877
Q ss_pred ----EEEEEecCCCCCC-CcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHH
Q 001091 660 ----KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1159)
Q Consensus 660 ----~iayv~Q~pwi~~-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQ 727 (1159)
.++||+|++.+|. .|++|||.||.. .+ +++.+++++.++|.+..+. +..+|||||||
T Consensus 84 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r-----------~~~~LSGGq~Q 152 (355)
T 1z47_A 84 PQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANR-----------FPHELSGGQQQ 152 (355)
T ss_dssp GGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHH
T ss_pred hhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcC-----------CcccCCHHHHH
Confidence 3899999998876 599999999742 22 3456777777777544333 34589999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccc-cccCEEEEEeCCeEEEecChH
Q 001091 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYE 804 (1159)
Q Consensus 728 RIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~ 804 (1159)
||+||||+..+|+++|||||||+||+...+.+.+ .++.+.+ |+|+|+|||+++.+ ..||+|++|++|+|++.|+++
T Consensus 153 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~-~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~ 231 (355)
T 1z47_A 153 RVALARALAPRPQVLLFDEPFAAIDTQIRRELRT-FVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPE 231 (355)
T ss_dssp HHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHH-HHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999999999999999999999887755 4555543 89999999999886 459999999999999999999
Q ss_pred HHHhhcchHH
Q 001091 805 DLIADQNSEL 814 (1159)
Q Consensus 805 eL~~~~~~~~ 814 (1159)
|+.++....|
T Consensus 232 ~l~~~p~~~~ 241 (355)
T 1z47_A 232 EVYEKPGTLF 241 (355)
T ss_dssp HHHHSCSSHH
T ss_pred HHHhCccchH
Confidence 9987333333
No 36
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.7e-38 Score=365.68 Aligned_cols=204 Identities=27% Similarity=0.304 Sum_probs=172.7
Q ss_pred cEEEeeeEEEeCCcccccCCCcc--cccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTI--KLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~--~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g------- 659 (1159)
.|+++|++++|+. .+ +|++ ||++++||+++|+||+||||||||++|.|..+|++|+| .++|
T Consensus 3 ~l~i~~l~~~y~~--------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I-~i~g~~i~~~~ 73 (353)
T 1oxx_K 3 RIIVKNVSKVFKK--------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL-YFDDRLVASNG 73 (353)
T ss_dssp CEEEEEEEEEEGG--------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEE-EETTEEEEETT
T ss_pred EEEEEeEEEEECC--------EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECcccc
Confidence 3899999999953 34 8999 99999999999999999999999999999999999999 7765
Q ss_pred ---------EEEEEecCCCCCC-CcHHHHHhcCCCC---C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCC
Q 001091 660 ---------KKAYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1159)
Q Consensus 660 ---------~iayv~Q~pwi~~-gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LS 722 (1159)
.++||+|++-+|. .|++|||.||... + +++.+++++..+|.+..+. +..+||
T Consensus 74 ~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~-----------~~~~LS 142 (353)
T 1oxx_K 74 KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH-----------FPRELS 142 (353)
T ss_dssp EESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSC
T ss_pred cccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcC-----------ChhhCC
Confidence 3899999998876 4999999998542 2 3456677777777654333 335899
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccc-cccCEEEEEeCCeEEE
Q 001091 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQ 799 (1159)
Q Consensus 723 GGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e 799 (1159)
|||||||+||||+..+|+++|||||||+||++..+.+.+ .++.+.+ |+|+|+|||+++.+ ..||+|++|++|+|++
T Consensus 143 GGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~-~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~ 221 (353)
T 1oxx_K 143 GAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA-LVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ 221 (353)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHH-HHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999887755 4555543 89999999999886 4599999999999999
Q ss_pred ecChHHHHhhcchHH
Q 001091 800 SGKYEDLIADQNSEL 814 (1159)
Q Consensus 800 ~Gt~~eL~~~~~~~~ 814 (1159)
.|+++|+.++....|
T Consensus 222 ~g~~~~l~~~p~~~~ 236 (353)
T 1oxx_K 222 VGKPEDLYDNPVSIQ 236 (353)
T ss_dssp EECHHHHHHSCSSHH
T ss_pred EcCHHHHHhCcccHH
Confidence 999999987333333
No 37
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.3e-38 Score=366.80 Aligned_cols=204 Identities=27% Similarity=0.348 Sum_probs=172.2
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.|+++|++++|++ .++|++ ||++++||+++|+|||||||||||++|.|.++|++|+| .++|
T Consensus 3 ~l~~~~l~~~y~~--------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I-~i~g~~i~~~~~~ 73 (362)
T 2it1_A 3 EIKLENIVKKFGN--------FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI-YFDEKDVTELPPK 73 (362)
T ss_dssp CEEEEEEEEESSS--------SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE-EETTEECTTSCGG
T ss_pred EEEEEeEEEEECC--------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEE-EECCEECCcCCHh
Confidence 3899999999953 468999 99999999999999999999999999999999999999 8877
Q ss_pred --EEEEEecCCCCCC-CcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHH
Q 001091 660 --KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1159)
Q Consensus 660 --~iayv~Q~pwi~~-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRI 729 (1159)
.++||+|++-+|. .|++|||.||.. .+ +++.+++++.++|.+..+ .+..+|||||||||
T Consensus 74 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------r~~~~LSGGq~QRv 142 (362)
T 2it1_A 74 DRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLN-----------RYPWQLSGGQQQRV 142 (362)
T ss_dssp GTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTT-----------CCGGGSCHHHHHHH
T ss_pred HCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhh-----------CChhhCCHHHHHHH
Confidence 3899999998876 599999999742 22 235666777777654333 23458999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccc-cccCEEEEEeCCeEEEecChHHH
Q 001091 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDL 806 (1159)
Q Consensus 730 aLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL 806 (1159)
+||||+.++|+++|||||||+||++..+.+.+ .++.+.+ |+|+|+|||+++.+ ..||+|++|++|+|++.|+++|+
T Consensus 143 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~-~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~ 221 (362)
T 2it1_A 143 AIARALVKEPEVLLLDEPLSNLDALLRLEVRA-ELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221 (362)
T ss_dssp HHHHHHTTCCSEEEEESGGGGSCHHHHHHHHH-HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999887755 4555543 89999999999876 56999999999999999999999
Q ss_pred HhhcchHH
Q 001091 807 IADQNSEL 814 (1159)
Q Consensus 807 ~~~~~~~~ 814 (1159)
.++....|
T Consensus 222 ~~~p~~~~ 229 (362)
T 2it1_A 222 YYKPKYKF 229 (362)
T ss_dssp HHSCSBHH
T ss_pred HhCccchH
Confidence 87333333
No 38
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.7e-38 Score=365.48 Aligned_cols=204 Identities=25% Similarity=0.304 Sum_probs=168.5
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.|+++|++++|++ .++|++ ||++++||+++|+|||||||||||++|.|.++|++|+| .++|
T Consensus 11 ~l~~~~l~~~y~~--------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I-~i~g~~i~~~~~~ 81 (372)
T 1v43_A 11 EVKLENLTKRFGN--------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI-YFGDRDVTYLPPK 81 (372)
T ss_dssp CEEEEEEEEEETT--------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE-EETTEECTTSCGG
T ss_pred eEEEEEEEEEECC--------EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEE-EECCEECCCCChh
Confidence 4899999999953 468999 99999999999999999999999999999999999999 8887
Q ss_pred --EEEEEecCCCCCC-CcHHHHHhcCCCC---C----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHH
Q 001091 660 --KKAYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1159)
Q Consensus 660 --~iayv~Q~pwi~~-gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRI 729 (1159)
.++||+|++.+|. .|++|||.||... + +++.+++++.++|.+..+. +..+|||||||||
T Consensus 82 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSGGq~QRv 150 (372)
T 1v43_A 82 DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNR-----------YPAQLSGGQRQRV 150 (372)
T ss_dssp GGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTS-----------CTTTCCSSCHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHH
Confidence 3899999998875 5999999998542 2 2356677777777544333 3468999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccc-cccCEEEEEeCCeEEEecChHHH
Q 001091 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDL 806 (1159)
Q Consensus 730 aLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL 806 (1159)
+||||+..+|+++|||||||+||++..+.+.+ .++.+.+ |+|+|+|||+++.+ ..||+|++|++|+|++.|+++|+
T Consensus 151 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~-~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 229 (372)
T 1v43_A 151 AVARAIVVEPDVLLMDEPLSNLDAKLRVAMRA-EIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229 (372)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999887765 4555543 89999999999886 56999999999999999999999
Q ss_pred HhhcchHH
Q 001091 807 IADQNSEL 814 (1159)
Q Consensus 807 ~~~~~~~~ 814 (1159)
.++....|
T Consensus 230 ~~~p~~~~ 237 (372)
T 1v43_A 230 YLRPNSVF 237 (372)
T ss_dssp HHCCSBHH
T ss_pred HhCcccHH
Confidence 87333333
No 39
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-38 Score=347.92 Aligned_cols=194 Identities=27% Similarity=0.375 Sum_probs=165.2
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++++|+. .|+| ||++++ |+++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 2 l~~~~l~~~y~~----------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~ 69 (240)
T 2onk_A 2 FLKVRAEKRLGN----------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEV-RLNGADITPLPPER 69 (240)
T ss_dssp CEEEEEEEEETT----------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEE-EETTEECTTSCTTT
T ss_pred EEEEEEEEEeCC----------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCcCchhh
Confidence 688999999941 3899 999999 9999999999999999999999999999999 8877
Q ss_pred -EEEEEecCCCCCCC-cHHHHHhcCCCC-----ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHH
Q 001091 660 -KKAYVPQSSWIQTG-TIRENILFGKDM-----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1159)
Q Consensus 660 -~iayv~Q~pwi~~g-TIreNIlfG~~~-----d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLA 732 (1159)
.++|++|+|.++.. |++|||.|+... ++++.+++++..+|.+.. .....+||||||||++||
T Consensus 70 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lA 138 (240)
T 2onk_A 70 RGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL-----------DRKPARLSGGERQRVALA 138 (240)
T ss_dssp SCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTT-----------TCCGGGSCHHHHHHHHHH
T ss_pred CcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHh-----------cCChhhCCHHHHHHHHHH
Confidence 38999999998876 999999997543 134455666666554322 234568999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccc-cccCEEEEEeCCeEEEecChHHHHh
Q 001091 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 733 RAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
||+.++|+++|||||||+||+.+.+.+.+ .+..+.+ |+|+|++||+++.+ ..||+|++|++|++++.|+++++.+
T Consensus 139 ral~~~p~lllLDEPts~LD~~~~~~~~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 139 RALVIQPRLLLLDEPLSAVDLKTKGVLME-ELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp HHHTTCCSSBEEESTTSSCCHHHHHHHHH-HHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999887754 5665542 89999999999986 5599999999999999999999876
No 40
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.7e-38 Score=364.23 Aligned_cols=198 Identities=29% Similarity=0.416 Sum_probs=170.5
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
|+++|++++|++ . ++++ ||++++||+++|+|||||||||||++|.|.++|++|+| .++|
T Consensus 2 l~~~~l~~~y~~--------~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I-~~~g~~i~~~~~~~ 71 (348)
T 3d31_A 2 IEIESLSRKWKN--------F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI-LLDGKDVTDLSPEK 71 (348)
T ss_dssp EEEEEEEEECSS--------C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEE-EETTEECTTSCHHH
T ss_pred EEEEEEEEEECC--------E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEE-EECCEECCCCchhh
Confidence 689999999952 4 8999 99999999999999999999999999999999999999 8887
Q ss_pred -EEEEEecCCCCCCC-cHHHHHhcCCC----CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHH
Q 001091 660 -KKAYVPQSSWIQTG-TIRENILFGKD----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1159)
Q Consensus 660 -~iayv~Q~pwi~~g-TIreNIlfG~~----~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLAR 733 (1159)
.++||+|++.+|.. |++|||.||.. -.+++.+++++.++|.+..+ .+..+|||||||||+|||
T Consensus 72 r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------~~~~~LSgGq~QRvalAr 140 (348)
T 3d31_A 72 HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-----------RNPLTLSGGEQQRVALAR 140 (348)
T ss_dssp HTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT-----------SCGGGSCHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHHHHHHHH
Confidence 38999999988865 99999999742 12266777888777754333 334689999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccc-cccCEEEEEeCCeEEEecChHHHHhhc
Q 001091 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQ 810 (1159)
Q Consensus 734 Aly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~~~ 810 (1159)
|+..+|+++|||||||+||+...+.+.+ .++.+. .|+|+|+|||+++.+ ..||+|++|++|+|++.|+++|+.++.
T Consensus 141 aL~~~P~lLLLDEP~s~LD~~~~~~l~~-~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 141 ALVTNPKILLLDEPLSALDPRTQENARE-MLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp HTTSCCSEEEEESSSTTSCHHHHHHHHH-HHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 9999999999999999999999887755 455554 389999999999875 569999999999999999999998733
No 41
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=5.8e-38 Score=363.37 Aligned_cols=204 Identities=24% Similarity=0.335 Sum_probs=171.9
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
.|+++|++++|++ .++|++ ||++++||+++|+|||||||||||++|.|..+|++|+| .++|
T Consensus 3 ~l~~~~l~~~y~~--------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I-~i~g~~~~~~~~~ 73 (372)
T 1g29_1 3 GVRLVDVWKVFGE--------VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI-YIGDKLVADPEKG 73 (372)
T ss_dssp EEEEEEEEEEETT--------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE-EETTEEEEEGGGT
T ss_pred EEEEEeEEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEE-EECCEECcccccc
Confidence 3889999999953 468999 99999999999999999999999999999999999999 7765
Q ss_pred --------EEEEEecCCCCCC-CcHHHHHhcCCC---CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCH
Q 001091 660 --------KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1159)
Q Consensus 660 --------~iayv~Q~pwi~~-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSG 723 (1159)
.++||+|++.+|. .|++|||.||.. .+ +++.+++++..+|.+..+ .+..+|||
T Consensus 74 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------r~~~~LSG 142 (372)
T 1g29_1 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-----------RKPRELSG 142 (372)
T ss_dssp EECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-----------CCGGGSCH
T ss_pred ccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CCcccCCH
Confidence 3899999998874 699999999742 22 245667777777754333 23468999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCcccc-cccCEEEEEeCCeEEEe
Q 001091 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQS 800 (1159)
Q Consensus 724 GQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~ 800 (1159)
||||||+||||+..+|+++|||||||+||++..+.+.+ .++.+.+ |+|+|+|||+++.+ ..||+|++|++|+|++.
T Consensus 143 Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~-~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~ 221 (372)
T 1g29_1 143 GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA-ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV 221 (372)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHH-HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHH-HHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999999999999999999999999887755 4555543 89999999999886 56999999999999999
Q ss_pred cChHHHHhhcchHH
Q 001091 801 GKYEDLIADQNSEL 814 (1159)
Q Consensus 801 Gt~~eL~~~~~~~~ 814 (1159)
|+++|+.++....|
T Consensus 222 g~~~~l~~~p~~~~ 235 (372)
T 1g29_1 222 GSPDEVYDKPANTF 235 (372)
T ss_dssp ECHHHHHHSCSBHH
T ss_pred CCHHHHHhCcccHH
Confidence 99999987333333
No 42
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=3e-38 Score=353.18 Aligned_cols=199 Identities=26% Similarity=0.361 Sum_probs=167.6
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
..|+++|++++|+. .++|+| ||++++||+++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 20 ~~l~~~~l~~~y~~--------~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I-~~~g~~~~~~~~ 90 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG--------KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV-NLFGKMPGKVGY 90 (279)
T ss_dssp EEEEEEEEEEEETT--------EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE-EETTBCCC---C
T ss_pred ceEEEEeEEEEECC--------EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEE-EECCEEcccccC
Confidence 35999999999963 468999 99999999999999999999999999999999999999 8876
Q ss_pred -------EEEEEecCCCC-CCC--cHHHHHhcCCC--------CCh---HHHHHHHHHhccchHHHhccCCCCccccCCC
Q 001091 660 -------KKAYVPQSSWI-QTG--TIRENILFGKD--------MRQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1159)
Q Consensus 660 -------~iayv~Q~pwi-~~g--TIreNIlfG~~--------~d~---~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G 718 (1159)
.++||+|+|.+ ++. |++|||.++.. .++ ++.+++++.++|.+. ...+.
T Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~ 159 (279)
T 2ihy_A 91 SAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAK-----------AQQYI 159 (279)
T ss_dssp CHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGG-----------TTSBG
T ss_pred CHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhH-----------hcCCh
Confidence 28999999864 444 99999998741 122 345566666666432 23456
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEE--EEEccCcccc-cccCEEEEEeC
Q 001091 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTV--LYTTHQLEFL-DAADLVLVMKD 794 (1159)
Q Consensus 719 ~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTv--IlVTH~l~~l-~~aD~Iivl~~ 794 (1159)
.+||||||||++||||+..+|+++|||||||+||+.+.+.+.+ .++.+. +|+|+ |+|||+++.+ ..||+|++|++
T Consensus 160 ~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~-~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~ 238 (279)
T 2ihy_A 160 GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLS-ILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKD 238 (279)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEET
T ss_pred hhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHH-HHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEEC
Confidence 7899999999999999999999999999999999999887765 565553 38999 9999999987 46999999999
Q ss_pred CeEEEecChHHHHh
Q 001091 795 GKIEQSGKYEDLIA 808 (1159)
Q Consensus 795 G~I~e~Gt~~eL~~ 808 (1159)
|+|++.|+++++.+
T Consensus 239 G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 239 GQSIQQGAVEDILT 252 (279)
T ss_dssp TEEEEEEEHHHHCS
T ss_pred CEEEEECCHHHHhc
Confidence 99999999999865
No 43
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1e-37 Score=345.67 Aligned_cols=197 Identities=20% Similarity=0.351 Sum_probs=168.8
Q ss_pred EEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g---------- 659 (1159)
++++|++++|+... ...++|++ ||+++ |++++|+||+|||||||+++|.|.+ |.+|+| .++|
T Consensus 2 l~~~~l~~~y~~~~----~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I-~~~g~~~~~~~~~~ 74 (263)
T 2pjz_A 2 IQLKNVGITLSGKG----YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNI-FINGMEVRKIRNYI 74 (263)
T ss_dssp EEEEEEEEEEEEET----TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEE-EETTEEGGGCSCCT
T ss_pred EEEEEEEEEeCCCC----ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEE-EECCEECcchHHhh
Confidence 68999999996410 01468999 99999 9999999999999999999999999 999999 8887
Q ss_pred EEE-EEecCCCCCCCcHHHHHhcCC---CCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 001091 660 KKA-YVPQSSWIQTGTIRENILFGK---DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1159)
Q Consensus 660 ~ia-yv~Q~pwi~~gTIreNIlfG~---~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAl 735 (1159)
+++ |++|+|.+ +.|++||+.++. ..++++.+++++..+|.. ...+.+..+||||||||++||||+
T Consensus 75 ~i~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LSgGqkqRv~lAraL 143 (263)
T 2pjz_A 75 RYSTNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGE----------EILRRKLYKLSAGQSVLVRTSLAL 143 (263)
T ss_dssp TEEECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCG----------GGGGSBGGGSCHHHHHHHHHHHHH
T ss_pred heEEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCCh----------hHhcCChhhCCHHHHHHHHHHHHH
Confidence 589 99999999 999999999864 334566777777776651 223456779999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccc-cccC-EEEEEeCCeEEEecChHHHHh
Q 001091 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL-DAAD-LVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 736 y~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l-~~aD-~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
+++|+++|||||||+||+++.+.+.+ .+..+.+ |+|+|||+++.+ ..|| +|++|++|++++.|+++|+.+
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~-~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 144 ASQPEIVGLDEPFENVDAARRHVISR-YIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp HTCCSEEEEECTTTTCCHHHHHHHHH-HHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred HhCCCEEEEECCccccCHHHHHHHHH-HHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999887754 5655533 999999999987 5699 999999999999999999876
No 44
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.6e-37 Score=341.58 Aligned_cols=193 Identities=23% Similarity=0.404 Sum_probs=168.0
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE--------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~-------- 660 (1159)
.++++|++++ ++|++ ||++++||.++|+||+|||||||+++|.|.++|. |+| .++|.
T Consensus 4 ~l~~~~l~~~------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i-~~~g~~~~~~~~~ 69 (249)
T 2qi9_C 4 VMQLQDVAES------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSI-QFAGQPLEAWSAT 69 (249)
T ss_dssp EEEEEEEEET------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEE-EETTEEGGGSCHH
T ss_pred EEEEEceEEE------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEE-EECCEECCcCCHH
Confidence 4788999875 36899 9999999999999999999999999999999999 999 88873
Q ss_pred -----EEEEecCCCCCCC-cHHHHHhcCCCC--ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHH
Q 001091 661 -----KAYVPQSSWIQTG-TIRENILFGKDM--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1159)
Q Consensus 661 -----iayv~Q~pwi~~g-TIreNIlfG~~~--d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLA 732 (1159)
++|++|+|.++.. |++||+.++... ++++.+++++..+|.+.. ..+..+||||||||++||
T Consensus 70 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv~lA 138 (249)
T 2qi9_C 70 KLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL-----------GRSTNQLSGGEWQRVRLA 138 (249)
T ss_dssp HHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGT-----------TSBGGGCCHHHHHHHHHH
T ss_pred HHhceEEEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHH
Confidence 8999999988765 999999998532 366777888888775432 245679999999999999
Q ss_pred HHHccCCC-------EEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccc-cccCEEEEEeCCeEEEecCh
Q 001091 733 RAVYSNSD-------VYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKY 803 (1159)
Q Consensus 733 RAly~~a~-------I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~ 803 (1159)
||++++|+ ++|||||||+||+.+.+.+.+ .+..+. +|+|+|++||+++.+ ..||+|++|++|++++.|++
T Consensus 139 raL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~-~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 217 (249)
T 2qi9_C 139 AVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDK-ILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRR 217 (249)
T ss_dssp HHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEH
T ss_pred HHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999 999999999999999887765 565553 589999999999997 56999999999999999999
Q ss_pred HHHHh
Q 001091 804 EDLIA 808 (1159)
Q Consensus 804 ~eL~~ 808 (1159)
+++.+
T Consensus 218 ~~~~~ 222 (249)
T 2qi9_C 218 EEVLT 222 (249)
T ss_dssp HHHSC
T ss_pred HHHhc
Confidence 99865
No 45
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.2e-37 Score=343.50 Aligned_cols=196 Identities=21% Similarity=0.218 Sum_probs=157.2
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCC--ccCCCCcEEEECCE------
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE--IPRISGAAIKVHGK------ 660 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe--~~~~~G~i~~v~g~------ 660 (1159)
.++++|++++|+. .++|+| ||++++||+++|+||+|||||||+++|.|. ++|.+|+| .++|.
T Consensus 3 ~l~~~~l~~~y~~--------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I-~~~g~~~~~~~ 73 (250)
T 2d2e_A 3 QLEIRDLWASIDG--------ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEI-LLDGENILELS 73 (250)
T ss_dssp EEEEEEEEEEETT--------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEE-EETTEECTTSC
T ss_pred eEEEEeEEEEECC--------EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEE-EECCEECCCCC
Confidence 3889999999963 468999 999999999999999999999999999998 88999999 88772
Q ss_pred --------EEEEecCCCCCCC-cHHHHHhcCCC------CC----hHHHHHHHHHhccchHHHhccCCCCccccCCCCC-
Q 001091 661 --------KAYVPQSSWIQTG-TIRENILFGKD------MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN- 720 (1159)
Q Consensus 661 --------iayv~Q~pwi~~g-TIreNIlfG~~------~d----~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~- 720 (1159)
++|++|+|.++.+ |++||+.++.. .+ .++.+++++..+|..++. .....+
T Consensus 74 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~~~~ 143 (250)
T 2d2e_A 74 PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYL----------SRYLNEG 143 (250)
T ss_dssp HHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGG----------GSBTTCC
T ss_pred HHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHh----------cCCcccC
Confidence 6899999998775 99999987531 11 234455566555532211 112234
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc--cCEEEEEeCCeE
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA--ADLVLVMKDGKI 797 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~--aD~Iivl~~G~I 797 (1159)
||||||||++||||+.++|+++|||||||+||+.+.+.+.+ .+..+. +|+|+|+|||+++.+.. ||+|++|++|++
T Consensus 144 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i 222 (250)
T 2d2e_A 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVAR-GVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRV 222 (250)
T ss_dssp ----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHH-HHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEE
Confidence 99999999999999999999999999999999999887765 566654 48999999999999876 599999999999
Q ss_pred EEecChHH
Q 001091 798 EQSGKYED 805 (1159)
Q Consensus 798 ~e~Gt~~e 805 (1159)
++.|+++.
T Consensus 223 ~~~g~~~~ 230 (250)
T 2d2e_A 223 VATGGPEL 230 (250)
T ss_dssp EEEESHHH
T ss_pred EEEeCHHH
Confidence 99999873
No 46
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=8.7e-37 Score=339.77 Aligned_cols=199 Identities=21% Similarity=0.286 Sum_probs=162.8
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCC--ccCCCCcEEEECCE-----
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE--IPRISGAAIKVHGK----- 660 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe--~~~~~G~i~~v~g~----- 660 (1159)
..++++|++++|++ .++|+| ||++++||+++|+||+|||||||+++|.|. ++|++|+| .++|.
T Consensus 19 ~~l~~~~l~~~y~~--------~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I-~~~g~~i~~~ 89 (267)
T 2zu0_C 19 HMLSIKDLHVSVED--------KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV-EFKGKDLLAL 89 (267)
T ss_dssp -CEEEEEEEEEETT--------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEE-EETTEEGGGS
T ss_pred ceEEEEeEEEEECC--------EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE-EECCEECCcC
Confidence 35999999999953 468999 999999999999999999999999999998 57899999 88872
Q ss_pred ---------EEEEecCCCCCCC-cHHHHHhcCCC----------CCh----HHHHHHHHHhccchHHHhccCCCCccccC
Q 001091 661 ---------KAYVPQSSWIQTG-TIRENILFGKD----------MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1159)
Q Consensus 661 ---------iayv~Q~pwi~~g-TIreNIlfG~~----------~d~----~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe 716 (1159)
++|++|+|.++.+ |++||+.++.. .++ ++.+++++..+|.+ ...+
T Consensus 90 ~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~ 158 (267)
T 2zu0_C 90 SPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPE-----------DLLT 158 (267)
T ss_dssp CHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCT-----------TTTT
T ss_pred CHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCCh-----------hHhc
Confidence 8999999988765 99999976420 121 23444555444432 2223
Q ss_pred CCC--CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc--cCEEEE
Q 001091 717 RGI--NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA--ADLVLV 791 (1159)
Q Consensus 717 ~G~--~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~--aD~Iiv 791 (1159)
+.. +||||||||++||||++++|+++|||||||+||+.+.+.+.+ .++.+. +|+|+|+|||+++.+.. ||+|++
T Consensus 159 ~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~-~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~ 237 (267)
T 2zu0_C 159 RSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVAD-GVNSLRDGKRSFIIVTHYQRILDYIKPDYVHV 237 (267)
T ss_dssp SBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHH-HHHTTCCSSCEEEEECSSGGGGGTSCCSEEEE
T ss_pred CCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEE
Confidence 332 599999999999999999999999999999999999887754 566654 48999999999999875 899999
Q ss_pred EeCCeEEEecChHHHHh
Q 001091 792 MKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 792 l~~G~I~e~Gt~~eL~~ 808 (1159)
|++|++++.|+++++..
T Consensus 238 l~~G~i~~~g~~~~~~~ 254 (267)
T 2zu0_C 238 LYQGRIVKSGDFTLVKQ 254 (267)
T ss_dssp EETTEEEEEECTTHHHH
T ss_pred EECCEEEEEcCHHHHhh
Confidence 99999999999887643
No 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.5e-36 Score=324.48 Aligned_cols=187 Identities=22% Similarity=0.349 Sum_probs=154.0
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------- 659 (1159)
..++++|++++|+ . ++|++ ||++++||+++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 9 ~~l~~~~ls~~y~--------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I-~~~g~~~~~~~~ 78 (214)
T 1sgw_A 9 SKLEIRDLSVGYD--------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI-IYNGVPITKVKG 78 (214)
T ss_dssp CEEEEEEEEEESS--------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEE-EETTEEGGGGGG
T ss_pred ceEEEEEEEEEeC--------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEhhhhcC
Confidence 3699999999994 3 68999 99999999999999999999999999999999999999 8887
Q ss_pred EEEEEecCCCCCCC-cHHHHHhcCCC-----CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHH
Q 001091 660 KKAYVPQSSWIQTG-TIRENILFGKD-----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1159)
Q Consensus 660 ~iayv~Q~pwi~~g-TIreNIlfG~~-----~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLAR 733 (1159)
.++|++|+|.++.+ |++|||.++.. .++++.+++++.++|. .. +.+..+||||||||++|||
T Consensus 79 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~-~~~~~~LSgGqkqrv~lar 146 (214)
T 1sgw_A 79 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-----------DL-KKKLGELSQGTIRRVQLAS 146 (214)
T ss_dssp GEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-----------CT-TSBGGGSCHHHHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-----------cC-CCChhhCCHHHHHHHHHHH
Confidence 38999999998876 99999988631 2345566666665543 23 4567899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEEEEEeCCeEE
Q 001091 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798 (1159)
Q Consensus 734 Aly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~ 798 (1159)
|++++|+++|||||||+||+.+.+.+.+ .+..+. +|+|+|++||+++.+..++..+++.+|+|-
T Consensus 147 aL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~~~~~ 211 (214)
T 1sgw_A 147 TLLVNAEIYVLDDPVVAIDEDSKHKVLK-SILEILKEKGIVIISSREELSYCDVNENLHKYSTKID 211 (214)
T ss_dssp HTTSCCSEEEEESTTTTSCTTTHHHHHH-HHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGBC---
T ss_pred HHHhCCCEEEEECCCcCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeCCccc
Confidence 9999999999999999999999887755 455543 479999999999998774444446666664
No 48
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.97 E-value=1.8e-35 Score=332.71 Aligned_cols=231 Identities=14% Similarity=0.094 Sum_probs=184.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEEEeCCcccc
Q 001091 527 LTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREEN 606 (1159)
Q Consensus 527 Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~~~~~sf~w~~~~~~ 606 (1159)
.+-+.+.+++...+. ..|+..+...+..+.++.++.+||.++++.+++...... +.......|+++|++|+|+
T Consensus 40 ~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~-~~~~~~~~i~~~~vs~~y~----- 112 (305)
T 2v9p_A 40 GSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEG-SWKSILTFFNYQNIELITF----- 112 (305)
T ss_dssp TTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSC-CTHHHHHHHHHTTCCHHHH-----
T ss_pred CccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC-cccccCCeEEEEEEEEEcC-----
Confidence 344566667766555 479999999999999999999999999986541111010 0001113488999999995
Q ss_pred cCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHH-HHhcCCC
Q 001091 607 FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE-NILFGKD 684 (1159)
Q Consensus 607 ~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIre-NIlfG~~ 684 (1159)
.++|++ |++|++|++++|+||+|||||||+++|+|++ +|+| ++|++|+|++|++|++| ||.|+..
T Consensus 113 ----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------~~~v~q~~~lf~~ti~~~ni~~~~~ 179 (305)
T 2v9p_A 113 ----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------LSFANHKSHFWLASLADTRAALVDD 179 (305)
T ss_dssp ----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------ECGGGTTSGGGGGGGTTCSCEEEEE
T ss_pred ----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------EEEecCccccccccHHHHhhccCcc
Confidence 258999 9999999999999999999999999999999 8988 57899999999999998 9999854
Q ss_pred CChHHHHHHHHHhccchHHHh-ccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 001091 685 MRQSFYEEVLEGCALNQDIEM-WADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQC 763 (1159)
Q Consensus 685 ~d~~~y~~vl~ac~L~~dl~~-lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~ 763 (1159)
.++ ++.+.++. ||+|++ |.+|||||||| |||++++|+|+| ||+||+++++.+.
T Consensus 180 ~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~--- 233 (305)
T 2v9p_A 180 ATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYL--- 233 (305)
T ss_dssp ECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGG---
T ss_pred ccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHH---
Confidence 432 22455666 888876 88999999999 999999999999 9999999987663
Q ss_pred HhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHHHhhcchHHHHHHH
Q 001091 764 LMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMK 819 (1159)
Q Consensus 764 i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~~l~~ 819 (1159)
. +||+++.+..||+| +|++|+|++.|+++++ ++.|.+++.
T Consensus 234 --~---------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~~~y~~l~~ 273 (305)
T 2v9p_A 234 --Y---------LHSRVQTFRFEQPC-TDESGEQPFNITDADW----KSFFVRLWG 273 (305)
T ss_dssp --G---------GTTTEEEEECCCCC-CCC---CCCCCCHHHH----HHHHHHSTT
T ss_pred --H---------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----HHHHHHHHH
Confidence 1 29999999999999 9999999999999998 245666543
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=3.7e-31 Score=324.98 Aligned_cols=199 Identities=21% Similarity=0.316 Sum_probs=165.1
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEec
Q 001091 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQ 666 (1159)
Q Consensus 588 ~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q 666 (1159)
+..++++|+++.|++ ..+++ ++++++||+++|+||+|||||||+++|.|.++|.+|+| .+..+++|+||
T Consensus 355 ~~~l~~~~l~~~~~~---------~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I-~~~~~i~~v~Q 424 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGS---------FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-EWDLTVAYKPQ 424 (607)
T ss_dssp CEEEEECCEEEECSS---------CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCC-CCCCCEEEECS
T ss_pred ceEEEEeceEEEecc---------eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EEeeEEEEEec
Confidence 346899999999852 35788 99999999999999999999999999999999999999 78888999999
Q ss_pred CCCC-CCCcHHHHHhcC-C-CC-ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEE
Q 001091 667 SSWI-QTGTIRENILFG-K-DM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVY 742 (1159)
Q Consensus 667 ~pwi-~~gTIreNIlfG-~-~~-d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~ 742 (1159)
++.. ++.|++||+.+. . .+ ++++.+++++..++.+. ......+|||||||||+||||+.++|+++
T Consensus 425 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGe~QRv~iAraL~~~p~lL 493 (607)
T 3bk7_A 425 YIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDL-----------YDRNVEDLSGGELQRVAIAATLLRDADIY 493 (607)
T ss_dssp SCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTT-----------TTSBGGGCCHHHHHHHHHHHHHTSCCSEE
T ss_pred CccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 9865 678999999764 1 11 23344555555554321 23345689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEeC--CeEEEecChHHHHh
Q 001091 743 IFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKD--GKIEQSGKYEDLIA 808 (1159)
Q Consensus 743 LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~--G~I~e~Gt~~eL~~ 808 (1159)
||||||++||+.+...+. +.++.+. +|+|+|+|||+++++. .||+|++|++ |++...|+++++..
T Consensus 494 lLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 494 LLDEPSAYLDVEQRLAVS-RAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp EEECTTTTCCHHHHHHHH-HHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999987765 4566653 4899999999999986 5999999986 88888999998876
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=3.6e-31 Score=322.01 Aligned_cols=199 Identities=21% Similarity=0.322 Sum_probs=163.8
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEec
Q 001091 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQ 666 (1159)
Q Consensus 588 ~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q 666 (1159)
+..++++|+++.|++ ..+++ ++++++||+++|+||+|||||||+++|.|.++|.+|+| .+..+++|+||
T Consensus 285 ~~~l~~~~l~~~~~~---------~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i-~~~~~i~~v~Q 354 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGS---------FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKI-EWDLTVAYKPQ 354 (538)
T ss_dssp CEEEEECCEEEEETT---------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCC-CCCCCEEEECS
T ss_pred CeEEEEeeEEEEECC---------EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECceEEEEec
Confidence 346899999999852 35788 99999999999999999999999999999999999999 78888999999
Q ss_pred CCCC-CCCcHHHHHhcC-C-CC-ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEE
Q 001091 667 SSWI-QTGTIRENILFG-K-DM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVY 742 (1159)
Q Consensus 667 ~pwi-~~gTIreNIlfG-~-~~-d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~ 742 (1159)
++.. ++.|++||+... . .+ ++++.+++++..++.+ .......+||||||||++||||+.++|+++
T Consensus 355 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGGe~qrv~lAraL~~~p~lL 423 (538)
T 1yqt_A 355 YIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIID-----------LYDREVNELSGGELQRVAIAATLLRDADIY 423 (538)
T ss_dssp SCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGG-----------GTTSBGGGCCHHHHHHHHHHHHHTSCCSEE
T ss_pred CCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 9865 678999998754 1 11 2333344444444322 223455689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEeC--CeEEEecChHHHHh
Q 001091 743 IFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKD--GKIEQSGKYEDLIA 808 (1159)
Q Consensus 743 LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~--G~I~e~Gt~~eL~~ 808 (1159)
||||||++||..+.+.+.+ .++.+. .|+|+|+|||+++++. .||+|++|++ |++...|+++++..
T Consensus 424 lLDEPt~~LD~~~~~~i~~-~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 424 LLDEPSAYLDVEQRLAVSR-AIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp EEECTTTTCCHHHHHHHHH-HHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEeCCcccCCHHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999999999887754 566654 3899999999999986 5999999986 88888999988875
No 51
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=3.1e-30 Score=312.98 Aligned_cols=198 Identities=21% Similarity=0.303 Sum_probs=161.1
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-EEEEEec
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-KKAYVPQ 666 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-~iayv~Q 666 (1159)
..++++|++..|++ ..+.+ |+++++||+++|+||+|||||||+++|.|.++|++|+| .+++ .++|+||
T Consensus 268 ~~l~~~~l~~~~~~---------~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~~~~i~~~~q 337 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD---------FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSV-TPEKQILSYKPQ 337 (538)
T ss_dssp EEEEECCEEEEETT---------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCE-ESSCCCEEEECS
T ss_pred ceEEEcceEEEECC---------EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCeeeEeech
Confidence 46889999988853 35777 99999999999999999999999999999999999999 7766 6999999
Q ss_pred CCCC-CCCcHHHHHhcCCC----CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 001091 667 SSWI-QTGTIRENILFGKD----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDV 741 (1159)
Q Consensus 667 ~pwi-~~gTIreNIlfG~~----~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I 741 (1159)
++.. +..|++||+.+... ..+++.+++++..+|.+. ......+|||||||||+||||+.++|++
T Consensus 338 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGq~QRv~iAraL~~~p~l 406 (538)
T 3ozx_A 338 RIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRL-----------LESNVNDLSGGELQKLYIAATLAKEADL 406 (538)
T ss_dssp SCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGC-----------TTSBGGGCCHHHHHHHHHHHHHHSCCSE
T ss_pred hcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHH-----------hcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 9764 57899999976422 123344555555555422 2345568999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccc-cCEEEEEeC--CeEEEecChHHHHh
Q 001091 742 YIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKD--GKIEQSGKYEDLIA 808 (1159)
Q Consensus 742 ~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~--G~I~e~Gt~~eL~~ 808 (1159)
+||||||++||+.+...+.+ .++.+. .|+|+|+|||+++.+.. ||+|++|++ |.+...|++.++..
T Consensus 407 LlLDEPT~gLD~~~~~~i~~-~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 407 YVLDQPSSYLDVEERYIVAK-AIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp EEEESTTTTCCHHHHHHHHH-HHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEEeCCccCCCHHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHH
Confidence 99999999999999877754 566554 48999999999999865 999999986 66777777777654
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.3e-30 Score=313.46 Aligned_cols=195 Identities=20% Similarity=0.327 Sum_probs=159.9
Q ss_pred eeeEEEeCCcccccCCCcccccC-CeEeeCC-----cEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecC
Q 001091 594 EAGEYAWDAREENFKKPTIKLTD-KMKIMKG-----SKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (1159)
Q Consensus 594 ~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G-----~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~ 667 (1159)
++.+|+|+.. ...+++ +|++++| |+++|+||+|||||||+++|.|+.+|++|+. .-...++|+||+
T Consensus 350 ~~~~~~y~~~-------~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~-~~~~~i~~~~q~ 421 (608)
T 3j16_B 350 ASRAFSYPSL-------KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD-IPKLNVSMKPQK 421 (608)
T ss_dssp SSSCCEECCE-------EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC-CCSCCEEEECSS
T ss_pred cceeEEecCc-------ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC-ccCCcEEEeccc
Confidence 5677888643 356778 8888888 7899999999999999999999999999986 444579999999
Q ss_pred CC-CCCCcHHHHHhcC---CCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q 001091 668 SW-IQTGTIRENILFG---KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYI 743 (1159)
Q Consensus 668 pw-i~~gTIreNIlfG---~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~L 743 (1159)
+. .+++|++||+... ...++++.+++++..+|.+. ......+|||||||||+||||+.++|+++|
T Consensus 422 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~-----------~~~~~~~LSGGqkQRv~iAraL~~~p~lLl 490 (608)
T 3j16_B 422 IAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDI-----------IDQEVQHLSGGELQRVAIVLALGIPADIYL 490 (608)
T ss_dssp CCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTT-----------SSSBSSSCCHHHHHHHHHHHHTTSCCSEEE
T ss_pred ccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 65 4678999998642 22345555666766665432 224456899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccc-cCEEEEEeC--CeEEEecChHHHHh
Q 001091 744 FDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKD--GKIEQSGKYEDLIA 808 (1159)
Q Consensus 744 LDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~--G~I~e~Gt~~eL~~ 808 (1159)
|||||++||+.+...+.+ .++.+. .|+|+|+|||+++.+.. ||+|++|++ |+++..|++++++.
T Consensus 491 LDEPT~gLD~~~~~~i~~-ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 491 IDEPSAYLDSEQRIICSK-VIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp ECCTTTTCCHHHHHHHHH-HHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred EECCCCCCCHHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 999999999999877654 566653 48999999999999765 999999986 99999999999987
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=5.1e-30 Score=324.45 Aligned_cols=193 Identities=27% Similarity=0.408 Sum_probs=149.4
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--EEEEEe
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVP 665 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--~iayv~ 665 (1159)
..++++|++|+|++. ..++|+| ||++++|++++|+||+|||||||+++|.|+++|++|+| .+++ +++|++
T Consensus 670 ~mL~v~nLs~~Y~g~------~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I-~~~~~~~I~yv~ 742 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGT------SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV-YTHENCRIAYIK 742 (986)
T ss_dssp EEEEEEEEEECCTTC------SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEE-EECTTCCEEEEC
T ss_pred ceEEEEeeEEEeCCC------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EEcCccceEeec
Confidence 359999999999642 2578999 99999999999999999999999999999999999999 8876 699999
Q ss_pred cCCCC-----CCCcHHHHHhc-----------------------------------------------------------
Q 001091 666 QSSWI-----QTGTIRENILF----------------------------------------------------------- 681 (1159)
Q Consensus 666 Q~pwi-----~~gTIreNIlf----------------------------------------------------------- 681 (1159)
|++.. .+.|++|||.+
T Consensus 743 Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~s 822 (986)
T 2iw3_A 743 QHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFL 822 (986)
T ss_dssp HHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred cchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhh
Confidence 98731 24566666532
Q ss_pred -------CCC------------------------------------------CChHHHHHHHHHhccchHHHhccCCCCc
Q 001091 682 -------GKD------------------------------------------MRQSFYEEVLEGCALNQDIEMWADGDLS 712 (1159)
Q Consensus 682 -------G~~------------------------------------------~d~~~y~~vl~ac~L~~dl~~lp~Gd~T 712 (1159)
+.+ ..+++.+++++.. |...
T Consensus 823 v~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~l-----------GL~~ 891 (986)
T 2iw3_A 823 LGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSML-----------GLDP 891 (986)
T ss_dssp EEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHT-----------TCCH
T ss_pred hhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHc-----------CCCc
Confidence 110 0011122222222 2222
Q ss_pred cc--cCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccccc-ccCEE
Q 001091 713 VV--GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLV 789 (1159)
Q Consensus 713 ~I--Ge~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~-~aD~I 789 (1159)
.. ..+..+||||||||++||||+.++|+++||||||++||+.+...+.+ .++.+ ++|+|+|||+++++. .||+|
T Consensus 892 ~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~-~L~~~--g~tVIiISHD~e~v~~l~DrV 968 (986)
T 2iw3_A 892 EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSK-ALKEF--EGGVIIITHSAEFTKNLTEEV 968 (986)
T ss_dssp HHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHH-HHHSC--SSEEEEECSCHHHHTTTCCEE
T ss_pred hhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHH-HHHHh--CCEEEEEECCHHHHHHhCCEE
Confidence 22 34567899999999999999999999999999999999999776654 45443 679999999999975 59999
Q ss_pred EEEeCCeEEEecC
Q 001091 790 LVMKDGKIEQSGK 802 (1159)
Q Consensus 790 ivl~~G~I~e~Gt 802 (1159)
++|++|++++.|+
T Consensus 969 ivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 969 WAVKDGRMTPSGH 981 (986)
T ss_dssp ECCBTTBCCC---
T ss_pred EEEECCEEEEeCC
Confidence 9999999998774
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.95 E-value=1.3e-27 Score=302.44 Aligned_cols=196 Identities=21% Similarity=0.350 Sum_probs=156.1
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHh-CCccCCCCcEEEECCEEEEEec
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSIL-GEIPRISGAAIKVHGKKAYVPQ 666 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~ll-Ge~~~~~G~i~~v~g~iayv~Q 666 (1159)
..+...|++++|++ .++|++ ||++++|++++|+||+|||||||+++|. |++ .|.-..-..+++|++|
T Consensus 434 ~~L~~~~ls~~yg~--------~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~~~~~~~~~~~v~q 502 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA--------KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGFPTQEECRTVYVEH 502 (986)
T ss_dssp CEEEEEEEEEEETT--------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTCCCTTTSCEEETTC
T ss_pred ceeEEeeEEEEECC--------EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCccccceeEEEEcc
Confidence 35777899999963 468999 9999999999999999999999999999 443 2210000124689999
Q ss_pred CC--CCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEE
Q 001091 667 SS--WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (1159)
Q Consensus 667 ~p--wi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LL 744 (1159)
++ ...+.|++||+.+...-.+++.+++++..++.++... ..-.+||||||||++||||+..+|+++||
T Consensus 503 ~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~----------~~~~~LSGGqkQRvaLArAL~~~P~lLLL 572 (986)
T 2iw3_A 503 DIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIA----------MPISALSGGWKMKLALARAVLRNADILLL 572 (986)
T ss_dssp CCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHH----------SBGGGCCHHHHHHHHHHHHHHTTCSEEEE
T ss_pred cccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhc----------CCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 75 4557799999986210016677888888888533321 22357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeCCeEE-EecChHHHHh
Q 001091 745 DDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE-QSGKYEDLIA 808 (1159)
Q Consensus 745 DDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~-e~Gt~~eL~~ 808 (1159)
||||++||+...+.+.+ .++. .|+|+|+|||+++++.. ||+|++|++|+++ ..|+++++.+
T Consensus 573 DEPTs~LD~~~~~~l~~-~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 573 DEPTNHLDTVNVAWLVN-YLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp ESTTTTCCHHHHHHHHH-HHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred ECCccCCCHHHHHHHHH-HHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999999887754 5655 68999999999999865 9999999999997 6899999875
No 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.95 E-value=4.2e-28 Score=297.94 Aligned_cols=184 Identities=25% Similarity=0.357 Sum_probs=149.1
Q ss_pred cEEE--------eeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEE-----
Q 001091 590 AIDI--------EAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI----- 655 (1159)
Q Consensus 590 ~I~~--------~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~----- 655 (1159)
.|++ +|++++|+.. ...|++ | ++++||.++|+||+|||||||+++|.|+++|++|++.
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~-------~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~ 154 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN-------AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDN 154 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT-------CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHH
T ss_pred eEEEecCCccccCCeEEEECCC-------CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccch
Confidence 4888 8899999642 257888 9 9999999999999999999999999999999999840
Q ss_pred ---EECC---------------EEEEEecCC----CCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCcc
Q 001091 656 ---KVHG---------------KKAYVPQSS----WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSV 713 (1159)
Q Consensus 656 ---~v~g---------------~iayv~Q~p----wi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~ 713 (1159)
.++| .++|++|.. .++.+|++||+.... +.++.+++++..+|.+..+
T Consensus 155 ~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~--~~~~~~~~L~~lgL~~~~~--------- 223 (607)
T 3bk7_A 155 VIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD--EVGKFEEVVKELELENVLD--------- 223 (607)
T ss_dssp HHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC--CSSCHHHHHHHTTCTTGGG---------
T ss_pred hhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH--HHHHHHHHHHHcCCCchhC---------
Confidence 1122 368888863 345579999997532 2456778888887754433
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEE
Q 001091 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLV 791 (1159)
Q Consensus 714 IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iiv 791 (1159)
..-.+||||||||++||||+.++|+++|||||||+||+.....+++ .++.+. +|+|+|+|||+++.+.. ||+|++
T Consensus 224 --~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~-~L~~l~~~g~tvIivsHdl~~~~~~adri~v 300 (607)
T 3bk7_A 224 --RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVAR-VIRRLANEGKAVLVVEHDLAVLDYLSDVIHV 300 (607)
T ss_dssp --SBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHCSEEEE
T ss_pred --CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEecChHHHHhhCCEEEE
Confidence 2345799999999999999999999999999999999999877755 565553 48999999999998765 999999
Q ss_pred EeCC
Q 001091 792 MKDG 795 (1159)
Q Consensus 792 l~~G 795 (1159)
|++|
T Consensus 301 l~~~ 304 (607)
T 3bk7_A 301 VYGE 304 (607)
T ss_dssp EESC
T ss_pred ECCC
Confidence 9865
No 56
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.95 E-value=5.1e-28 Score=294.31 Aligned_cols=183 Identities=25% Similarity=0.338 Sum_probs=144.7
Q ss_pred EEE-eeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEE--------EECC-
Q 001091 591 IDI-EAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI--------KVHG- 659 (1159)
Q Consensus 591 I~~-~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~--------~v~g- 659 (1159)
.++ +|++++|+.. .+.+++ | ++++||+++|+||+|||||||+++|.|+++|++|++. .++|
T Consensus 21 ~~~~~~ls~~yg~~-------~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~ 92 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN-------AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGN 92 (538)
T ss_dssp ---CCCEEEECSTT-------CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTS
T ss_pred hhHhcCcEEEECCc-------cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCc
Confidence 445 5899999642 357888 9 9999999999999999999999999999999999840 1222
Q ss_pred --------------EEEEEecCCC----CCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCC
Q 001091 660 --------------KKAYVPQSSW----IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1159)
Q Consensus 660 --------------~iayv~Q~pw----i~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~L 721 (1159)
.++|++|... .+.+|++||+.... +.++.+++++..+|..+.+ ..-.+|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~--~~~~~~~~l~~lgl~~~~~-----------~~~~~L 159 (538)
T 1yqt_A 93 ELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD--ETGKLEEVVKALELENVLE-----------REIQHL 159 (538)
T ss_dssp THHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC--SSSCHHHHHHHTTCTTTTT-----------SBGGGC
T ss_pred cHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh--HHHHHHHHHHHcCCChhhh-----------CChhhC
Confidence 3789998643 33469999996422 2356778888887754322 234579
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCC
Q 001091 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDG 795 (1159)
Q Consensus 722 SGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G 795 (1159)
||||||||+||||+.++|+++|||||||+||++..+.+++ .++.+. +|+|+|+|||+++++.. ||+|++|++|
T Consensus 160 SgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~-~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 160 SGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAAR-AIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 9999999999999999999999999999999999887765 455543 48999999999999865 9999999865
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.95 E-value=5.3e-28 Score=303.03 Aligned_cols=193 Identities=21% Similarity=0.270 Sum_probs=126.2
Q ss_pred cccccC-CeEeeCCcEEEEEcCCCCChhHHH---------------------HHHhCCccCCCCcEE------EECC---
Q 001091 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLL---------------------SSILGEIPRISGAAI------KVHG--- 659 (1159)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL---------------------~~llGe~~~~~G~i~------~v~g--- 659 (1159)
..+|+| ||+|++||+++|+||||||||||+ +.+.|...|..|.+. .+++
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 457999 999999999999999999999998 777777777754331 3333
Q ss_pred ------EEEEEecCCCC--------------------CCCcHHHHHhcCCCCChH-H--------HHHHHHHhccchHHH
Q 001091 660 ------KKAYVPQSSWI--------------------QTGTIRENILFGKDMRQS-F--------YEEVLEGCALNQDIE 704 (1159)
Q Consensus 660 ------~iayv~Q~pwi--------------------~~gTIreNIlfG~~~d~~-~--------y~~vl~ac~L~~dl~ 704 (1159)
.++|++|.+-+ ...|++||+.+....... . .+++.+.. +.++
T Consensus 111 ~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ 187 (670)
T 3ux8_A 111 SRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---GFLQ 187 (670)
T ss_dssp ----CCBHHHHTTCC-------------------------CC--------------------------CHHHH---HHHH
T ss_pred hccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---HHHH
Confidence 24566665432 346999999875322110 0 01111111 1122
Q ss_pred hccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcc
Q 001091 705 MWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD--VYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLE 781 (1159)
Q Consensus 705 ~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~--I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~ 781 (1159)
.+.-++. .......+|||||||||+||||+.++|+ ++|||||||+||++..+.+++ .++.+. +|+|+|+|||+++
T Consensus 188 ~~gL~~~-~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~-~l~~l~~~g~tvi~vtHd~~ 265 (670)
T 3ux8_A 188 NVGLDYL-TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIA-TLKSMRDLGNTLIVVEHDED 265 (670)
T ss_dssp HTTCTTC-CTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHH-HHHHHHHTTCEEEEECCCHH
T ss_pred HcCCchh-hhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHH
Confidence 2211110 1234567899999999999999999998 999999999999999888765 455543 5899999999999
Q ss_pred cccccCEEEEE------eCCeEEEecChHHHHh
Q 001091 782 FLDAADLVLVM------KDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 782 ~l~~aD~Iivl------~~G~I~e~Gt~~eL~~ 808 (1159)
.+..||+|++| ++|++++.|+++++.+
T Consensus 266 ~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 266 TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp HHHHCSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred HHhhCCEEEEecccccccCCEEEEecCHHHHhc
Confidence 98889999999 8999999999999987
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.94 E-value=3.7e-27 Score=295.44 Aligned_cols=126 Identities=27% Similarity=0.441 Sum_probs=98.4
Q ss_pred CCcHHHHHhcCCCCCh-HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCC---CEEEEeCC
Q 001091 672 TGTIRENILFGKDMRQ-SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS---DVYIFDDP 747 (1159)
Q Consensus 672 ~gTIreNIlfG~~~d~-~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a---~I~LLDDp 747 (1159)
+.|++||+.|.....+ ++-.+.++..+| ++ ...+....+|||||||||+||||+.++| +++|||||
T Consensus 504 ~ltv~e~l~~~~~~~~~~~~~~~l~~~~l---------~~-~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEP 573 (670)
T 3ux8_A 504 DMTVEDALDFFASIPKIKRKLETLYDVGL---------GY-MKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEP 573 (670)
T ss_dssp TSBHHHHHHHTTTCHHHHHHHHHHHHTTC---------TT-SBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEEST
T ss_pred hCCHHHHHHHHHHhhhHHHHHHHHHHcCC---------ch-hhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCC
Confidence 4688999887654321 122222222222 11 2345678899999999999999999887 49999999
Q ss_pred CCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEEEEE------eCCeEEEecChHHHHh
Q 001091 748 FSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVM------KDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 748 ~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~Iivl------~~G~I~e~Gt~~eL~~ 808 (1159)
||+||+.+.+.+.+ .++.+. +|+|+|+|||+++.+..||+|++| ++|+|++.|+++|+.+
T Consensus 574 t~~LD~~~~~~i~~-~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~ 640 (670)
T 3ux8_A 574 TTGLHVDDIARLLD-VLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 640 (670)
T ss_dssp TTTCCHHHHHHHHH-HHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHT
T ss_pred CCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHh
Confidence 99999999888765 455543 489999999999999889999999 8999999999999976
No 59
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=1.9e-26 Score=292.04 Aligned_cols=125 Identities=27% Similarity=0.418 Sum_probs=99.2
Q ss_pred CcHHHHHhcCCCCC-hHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCC---CEEEEeCCC
Q 001091 673 GTIRENILFGKDMR-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS---DVYIFDDPF 748 (1159)
Q Consensus 673 gTIreNIlfG~~~d-~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a---~I~LLDDp~ 748 (1159)
.|++||+.|..... .++..++++..+|. + ..+|+.+.+|||||||||+|||||.++| ++|||||||
T Consensus 767 ~tv~eal~f~~~~~~~~~~~~~L~~vGL~---------~-~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPT 836 (916)
T 3pih_A 767 MTVDEALEFFKNIPSIKRTLQVLHDVGLG---------Y-VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPT 836 (916)
T ss_dssp SBHHHHHHHTTTCHHHHHHHHHHHHTTGG---------G-SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTT
T ss_pred CCHHHHHHHHhcchhHHHHHHHHHHcCCc---------h-hhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCC
Confidence 45666665543321 12333444444442 1 2468889999999999999999999876 799999999
Q ss_pred CCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEEEEE------eCCeEEEecChHHHHh
Q 001091 749 SAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVM------KDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 749 SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~Iivl------~~G~I~e~Gt~~eL~~ 808 (1159)
++||++..+.+.+ .++.+. +|+|||+|||+++.+..||+|++| ++|+|+++|+++|+.+
T Consensus 837 sGLD~~~~~~L~~-lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 837 VGLHFEDVRKLVE-VLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp TTCCHHHHHHHHH-HHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred CCCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 9999999887754 566553 589999999999999999999999 8999999999999998
No 60
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.94 E-value=2.3e-27 Score=287.86 Aligned_cols=179 Identities=28% Similarity=0.352 Sum_probs=141.2
Q ss_pred eeEEEeCCcccccCCCcccccCCeEe-eCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEE-----------ECC---
Q 001091 595 AGEYAWDAREENFKKPTIKLTDKMKI-MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK-----------VHG--- 659 (1159)
Q Consensus 595 ~~sf~w~~~~~~~~~~~~~L~~nl~i-~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~-----------v~g--- 659 (1159)
+.+..|..+ .+.|. +|.+ ++||+++|+||+|||||||+++|.|.++|++|++ . ++|
T Consensus 4 ~~~~~~~~~-------~f~l~-~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i-~~~~~~~~~~~~~~g~~i 74 (538)
T 3ozx_A 4 EVIHRYKVN-------GFKLF-GLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP-NSKVGKDEVLKRFRGKEI 74 (538)
T ss_dssp CEEEESSTT-------SCEEE-CCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT-TSCCCHHHHHHHHTTSTT
T ss_pred CCceecCCC-------ceeec-CCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc-ccccchhhHHhhcCCeeH
Confidence 456667643 23333 3333 4999999999999999999999999999999976 2 111
Q ss_pred ----------------EEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCH
Q 001091 660 ----------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1159)
Q Consensus 660 ----------------~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSG 723 (1159)
.+.|++|.|.++.+|++|++... .++++.+++++.+++..+.+ ..-.+|||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~--~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSg 141 (538)
T 3ozx_A 75 YNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKI--DERGKKDEVKELLNMTNLWN-----------KDANILSG 141 (538)
T ss_dssp HHHHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHH--CCSSCHHHHHHHTTCGGGTT-----------SBGGGCCH
T ss_pred HHHHHHHhhcccchhhccchhhhhhhhccCcHHHHhhcc--hhHHHHHHHHHHcCCchhhc-----------CChhhCCH
Confidence 13455666778889999987532 23457788999888865432 23457999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccc-cCEEEEEeCCe
Q 001091 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1159)
Q Consensus 724 GQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~ 796 (1159)
||||||+||||++++|+|+|||||||+||++....+++ .++.+.+|+|+|+|||+++++.. ||+|++|++|.
T Consensus 142 Ge~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~-~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 142 GGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK-AIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH-HHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 99999999999999999999999999999999887764 67777679999999999998755 99999998764
No 61
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.8e-26 Score=281.27 Aligned_cols=184 Identities=23% Similarity=0.276 Sum_probs=141.1
Q ss_pred eeEEEeCCcccccCCCcccccCCeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEE-----------CC----
Q 001091 595 AGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV-----------HG---- 659 (1159)
Q Consensus 595 ~~sf~w~~~~~~~~~~~~~L~~nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v-----------~g---- 659 (1159)
|++++|... ...+++...+++||.++|+||+|||||||+++|.|+++|++|+| .. .|
T Consensus 82 ~~~~~Y~~~-------~~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i-~~~~~~~~~~~~~~g~~~~ 153 (608)
T 3j16_B 82 HVTHRYSAN-------SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF-DDPPEWQEIIKYFRGSELQ 153 (608)
T ss_dssp TEEEECSTT-------SCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT-CCSSCHHHHHHHTTTSTHH
T ss_pred CeEEEECCC-------ceeecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE-ecccchhhhhheecChhhh
Confidence 457777643 45666622689999999999999999999999999999999987 31 11
Q ss_pred -----------EEEEEecCCC----CC---CCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCC
Q 001091 660 -----------KKAYVPQSSW----IQ---TGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1159)
Q Consensus 660 -----------~iayv~Q~pw----i~---~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~L 721 (1159)
...+.+|..- .. ..++++++....+.++++.+++++..+|..+.+ ....+|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~L 222 (608)
T 3j16_B 154 NYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLK-----------RDIEKL 222 (608)
T ss_dssp HHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGG-----------SCTTTC
T ss_pred hhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhC-----------CChHHC
Confidence 0123333211 11 126777776555556678888888888865543 334689
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccc-cCEEEEEeCCeEE
Q 001091 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1159)
Q Consensus 722 SGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~ 798 (1159)
|||||||++||||+.++|++||||||||+||++....+++ .++.+. +|+|+|+|||+++.+.. ||+|++|++|..+
T Consensus 223 SgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~-~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~ 300 (608)
T 3j16_B 223 SGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQ-IIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSV 300 (608)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHH-HHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTTT
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCccc
Confidence 9999999999999999999999999999999999877754 566654 48999999999999865 9999999987543
No 62
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.4e-27 Score=284.08 Aligned_cols=175 Identities=12% Similarity=0.112 Sum_probs=138.7
Q ss_pred ccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCC-c-EEEECC----EEEEEecCCCC----CCCcHHHHHhcC
Q 001091 614 LTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG-A-AIKVHG----KKAYVPQSSWI----QTGTIRENILFG 682 (1159)
Q Consensus 614 L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G-~-i~~v~g----~iayv~Q~pwi----~~gTIreNIlfG 682 (1159)
+.+ |+++++|++++|+||+|||||||+++|+|.++|.+| + | .++| .++|+||++-+ ...|++||+ ||
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI-~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni-~~ 205 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPL-YINLDPQQPIFTVPGCISATPISDILDAQLPT-WG 205 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCE-EEECCTTSCSSSCSSCCEEEECCSCCCTTCTT-CS
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeE-EEcCCccCCeeeeccchhhcccccccchhhhh-cc
Confidence 346 789999999999999999999999999999999999 8 8 8876 58999999843 346999999 77
Q ss_pred CCC-----ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHH--HccCCCE----EEEeC-CCCC
Q 001091 683 KDM-----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA--VYSNSDV----YIFDD-PFSA 750 (1159)
Q Consensus 683 ~~~-----d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARA--ly~~a~I----~LLDD-p~SA 750 (1159)
... ++++..++++.. |..... + ..+||||||||++|||| +..+|++ +|||| ||++
T Consensus 206 ~~~~~~~~~~~~~~~ll~~~-----------gl~~~~-~-~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~ 272 (460)
T 2npi_A 206 QSLTSGATLLHNKQPMVKNF-----------GLERIN-E-NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQ 272 (460)
T ss_dssp CBCBSSCCSSCCBCCEECCC-----------CSSSGG-G-CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGG
T ss_pred cccccCcchHHHHHHHHHHh-----------CCCccc-c-hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccc
Confidence 542 111111222222 222222 2 67999999999999999 9999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHhhhcCCcEEEEEccCcc------cc-cccCE-----EEEEe-CCeEEEecChHHHHh
Q 001091 751 VDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE------FL-DAADL-----VLVMK-DGKIEQSGKYEDLIA 808 (1159)
Q Consensus 751 LD~~t~~~if~~~i~g~l~~kTvIlVTH~l~------~l-~~aD~-----Iivl~-~G~I~e~Gt~~eL~~ 808 (1159)
||+. ...+.+.++.. ++|+|+|||+.+ .+ ..||+ |++|+ +|+|+ .|+.+++.+
T Consensus 273 LD~~--~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 273 LDEN--LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp SCSS--CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHH
T ss_pred cChh--HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhh
Confidence 9999 44555555543 789999999988 43 45999 99999 99999 999998854
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.92 E-value=7.4e-25 Score=275.38 Aligned_cols=94 Identities=28% Similarity=0.519 Sum_probs=84.6
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEE
Q 001091 714 VGERGINLSGGQKQRIQLARAVYSN---SDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLV 789 (1159)
Q Consensus 714 IGe~G~~LSGGQKQRIaLARAly~~---a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~I 789 (1159)
.+....+|||||||||+||||+.++ |++|||||||++||++..+.+.+ .++.+. +|+|||+|||+++++..||+|
T Consensus 724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~-lL~~L~~~G~tVIvisHdl~~i~~aDri 802 (842)
T 2vf7_A 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQR-QLVKLVDAGNTVIAVEHKMQVVAASDWV 802 (842)
T ss_dssp TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECCCHHHHTTCSEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEcCCHHHHHhCCEE
Confidence 5777889999999999999999996 79999999999999999887754 455543 589999999999999889999
Q ss_pred EEE------eCCeEEEecChHHHHh
Q 001091 790 LVM------KDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 790 ivl------~~G~I~e~Gt~~eL~~ 808 (1159)
++| ++|+|+..|+++++.+
T Consensus 803 i~L~p~~g~~~G~Iv~~g~~~el~~ 827 (842)
T 2vf7_A 803 LDIGPGAGEDGGRLVAQGTPAEVAQ 827 (842)
T ss_dssp EEECSSSGGGCCSEEEEECHHHHTT
T ss_pred EEECCCCCCCCCEEEEEcCHHHHHh
Confidence 999 6999999999999876
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.91 E-value=1.6e-24 Score=273.13 Aligned_cols=95 Identities=29% Similarity=0.536 Sum_probs=84.9
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCE
Q 001091 713 VVGERGINLSGGQKQRIQLARAVYSNS---DVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADL 788 (1159)
Q Consensus 713 ~IGe~G~~LSGGQKQRIaLARAly~~a---~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~ 788 (1159)
..+....+|||||||||+||||+.++| ++|||||||++||+...+.+.+ .++.+. +|+|+|+|||+++++..||+
T Consensus 856 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~-lL~~L~~~G~TVIvisHdl~~i~~aDr 934 (993)
T 2ygr_A 856 RLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLN-VINGLVDKGNTVIVIEHNLDVIKTSDW 934 (993)
T ss_dssp BTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECCCHHHHTTCSE
T ss_pred cccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEcCCHHHHHhCCE
Confidence 457788899999999999999999875 9999999999999999887755 555543 58999999999999988999
Q ss_pred EEEE------eCCeEEEecChHHHHh
Q 001091 789 VLVM------KDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 789 Iivl------~~G~I~e~Gt~~eL~~ 808 (1159)
|++| ++|+|+..|+++++.+
T Consensus 935 IivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 935 IIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp EEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred EEEECCCcCCCCCEEEEecCHHHHHh
Confidence 9999 6899999999999987
No 65
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.91 E-value=1.1e-24 Score=273.48 Aligned_cols=95 Identities=29% Similarity=0.540 Sum_probs=84.8
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCE
Q 001091 713 VVGERGINLSGGQKQRIQLARAVYSNS---DVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADL 788 (1159)
Q Consensus 713 ~IGe~G~~LSGGQKQRIaLARAly~~a---~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~ 788 (1159)
..+....+|||||||||+||||+.++| ++|||||||++||++..+.+.+ .++.+. +|+|+|+|||+++.+..||+
T Consensus 838 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~-lL~~L~~~G~TVIvisHdl~~i~~aDr 916 (972)
T 2r6f_A 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLD-VLHRLVDNGDTVLVIEHNLDVIKTADY 916 (972)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECCCHHHHTTCSE
T ss_pred cccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEcCCHHHHHhCCE
Confidence 456778899999999999999999875 9999999999999999887765 455543 58999999999999988999
Q ss_pred EEEE------eCCeEEEecChHHHHh
Q 001091 789 VLVM------KDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 789 Iivl------~~G~I~e~Gt~~eL~~ 808 (1159)
|++| ++|+|+..|+++++.+
T Consensus 917 IivL~p~gG~~~G~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 917 IIDLGPEGGDRGGQIVAVGTPEEVAE 942 (972)
T ss_dssp EEEECSSSTTSCCSEEEEESHHHHHT
T ss_pred EEEEcCCCCCCCCEEEEecCHHHHHh
Confidence 9999 6899999999999987
No 66
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.90 E-value=2.4e-24 Score=254.98 Aligned_cols=79 Identities=22% Similarity=0.285 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEE----eC
Q 001091 721 LSGGQKQRIQLARAVYSNS--DVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM----KD 794 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a--~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl----~~ 794 (1159)
||||||||++||||++++| +++||||||++||+++.+.+.+ .++.+.+|+|+|+|||+++++..||+|++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~-~L~~l~~~~~vi~itH~~~~~~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAE-QLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHH-HHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHhCCCEEEEEeCcHHHHhhcCeEEEEEEeccC
Confidence 8999999999999999999 9999999999999999888765 566666799999999999999999999999 99
Q ss_pred CeEEEe
Q 001091 795 GKIEQS 800 (1159)
Q Consensus 795 G~I~e~ 800 (1159)
|+++..
T Consensus 375 G~~~~~ 380 (415)
T 4aby_A 375 GRTVSH 380 (415)
T ss_dssp TEEEEE
T ss_pred CceEEE
Confidence 998765
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.88 E-value=1.1e-22 Score=232.72 Aligned_cols=186 Identities=20% Similarity=0.210 Sum_probs=124.6
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCc-------------------------------------------------
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI------------------------------------------------- 647 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~------------------------------------------------- 647 (1159)
++++.+| +++|+||+|||||||+.+|...+
T Consensus 19 ~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r~~ 97 (322)
T 1e69_A 19 LIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAREL 97 (322)
T ss_dssp EEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEEEE
T ss_pred EEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEEEE
Confidence 6888899 99999999999999999998332
Q ss_pred -cCCCCcEEEECCE-------------EEEEecCCCC-CCCcHHHHHhcCCC-----CC--------hHHHHHHHHHhc-
Q 001091 648 -PRISGAAIKVHGK-------------KAYVPQSSWI-QTGTIRENILFGKD-----MR--------QSFYEEVLEGCA- 698 (1159)
Q Consensus 648 -~~~~G~i~~v~g~-------------iayv~Q~pwi-~~gTIreNIlfG~~-----~d--------~~~y~~vl~ac~- 698 (1159)
.+.+|.+ .++|. +++.||+..+ +.|+|.+|+..+.. .| ...|+++.+...
T Consensus 98 ~~~~~~~~-~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~~~ 176 (322)
T 1e69_A 98 KRTGENTY-YLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFNR 176 (322)
T ss_dssp ETTSCEEE-EETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHHHH
T ss_pred EcCCceEE-EECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 1222344 66663 3455666554 47889998876421 01 124555555421
Q ss_pred --------------cch-HHHhccCCCCccccC------CCCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCH
Q 001091 699 --------------LNQ-DIEMWADGDLSVVGE------RGINLSGGQKQRIQLARAVY----SNSDVYIFDDPFSAVDA 753 (1159)
Q Consensus 699 --------------L~~-dl~~lp~Gd~T~IGe------~G~~LSGGQKQRIaLARAly----~~a~I~LLDDp~SALD~ 753 (1159)
+.. ..+.++.|.++.+++ +..+||||||||++||||+. .+|+++||||||++||+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~ 256 (322)
T 1e69_A 177 FISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDD 256 (322)
T ss_dssp HHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCH
T ss_pred HHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCH
Confidence 000 113455566555432 35689999999999999995 78999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEE--EEEeCCeE-EEecChHH
Q 001091 754 HTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLV--LVMKDGKI-EQSGKYED 805 (1159)
Q Consensus 754 ~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~I--ivl~~G~I-~e~Gt~~e 805 (1159)
...+.+++ .+..+.+++|+|++||+.+.+..||++ ++|++|+. +...+.+|
T Consensus 257 ~~~~~l~~-~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 257 YNAERFKR-LLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp HHHHHHHH-HHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred HHHHHHHH-HHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 99887765 566665688999999998888889987 88888864 33344444
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.87 E-value=1.7e-24 Score=231.66 Aligned_cols=146 Identities=19% Similarity=0.182 Sum_probs=90.1
Q ss_pred ccccCCeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEE----------CCEEEEEecCCCCCCCcHHHHH-h
Q 001091 612 IKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV----------HGKKAYVPQSSWIQTGTIRENI-L 680 (1159)
Q Consensus 612 ~~L~~nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v----------~g~iayv~Q~pwi~~gTIreNI-l 680 (1159)
.+|++ +++|++++|+||+|||||||+++|.|. +|++|+| .. ...++|++|+| +||+ .
T Consensus 14 ~~l~~---i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I-~~~~~~~~~~~~~~~ig~v~q~~-------~enl~~ 81 (208)
T 3b85_A 14 HYVDA---IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV-SRIILTRPAVEAGEKLGFLPGTL-------NEKIDP 81 (208)
T ss_dssp HHHHH---HHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSC-SEEEEEECSCCTTCCCCSSCC-------------CT
T ss_pred HHHHh---ccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCee-eeEEecCCchhhhcceEEecCCH-------HHHHHH
Confidence 35554 689999999999999999999999999 9999988 32 23589999988 7888 5
Q ss_pred cCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH
Q 001091 681 FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760 (1159)
Q Consensus 681 fG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if 760 (1159)
++.+. +...-+... .+.++.+ +.. | | |||||++||||+..+|+++|||||||+ +.+.+
T Consensus 82 ~~~~~----~~~~~~~~~-~~~~~~~-------l~~-g--l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l- 139 (208)
T 3b85_A 82 YLRPL----HDALRDMVE-PEVIPKL-------MEA-G--I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQM- 139 (208)
T ss_dssp TTHHH----HHHHTTTSC-TTHHHHH-------HHT-T--S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHH-
T ss_pred HHHHH----HHHHHHhcc-HHHHHHH-------HHh-C--C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHH-
Confidence 64311 110000000 0011100 111 1 1 999999999999999999999999999 43444
Q ss_pred HHHHhhhcCCcEEEEEccCcccccccCEEEEEeCC
Q 001091 761 KQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDG 795 (1159)
Q Consensus 761 ~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G 795 (1159)
.+.+..+.+|+|+| |||+++.+. ++...+||
T Consensus 140 ~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G 170 (208)
T 3b85_A 140 KMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSG 170 (208)
T ss_dssp HHHHTTBCTTCEEE-EEEC---------------C
T ss_pred HHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCc
Confidence 45666664578999 999987654 34444555
No 69
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.87 E-value=2.8e-22 Score=232.92 Aligned_cols=84 Identities=26% Similarity=0.423 Sum_probs=73.6
Q ss_pred cCCCCCCCHHHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccC
Q 001091 715 GERGINLSGGQKQRIQLARAVY------SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAAD 787 (1159)
Q Consensus 715 Ge~G~~LSGGQKQRIaLARAly------~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD 787 (1159)
+....+||||||||++||||+. .+|+++||||||++||+.+.+.+++ .+..+. +|+|+|+|||+++....||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~-~l~~l~~~g~tvi~itH~~~~~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIAS-VLKELERLNKVIVFITHDREFSEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHH-HHHGGGGSSSEEEEEESCHHHHTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhCCCEEEEEecchHHHHhCC
Confidence 3455689999999999999998 7999999999999999999888765 565543 5899999999999988899
Q ss_pred EEEEEeCCeEEE
Q 001091 788 LVLVMKDGKIEQ 799 (1159)
Q Consensus 788 ~Iivl~~G~I~e 799 (1159)
+|++|++|+|++
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999975
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.85 E-value=5.4e-23 Score=213.49 Aligned_cols=149 Identities=18% Similarity=0.168 Sum_probs=102.0
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHH
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEG 696 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~a 696 (1159)
||++++||+++++||+|||||||++++.+..+..++.. -.++++|++--. .++...|+.....
T Consensus 3 sl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~-----~~g~~~~~~~~~------------~~~~~~~~~~~~~ 65 (171)
T 4gp7_A 3 KLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDF-----CRGLMSDDENDQ------------TVTGAAFDVLHYI 65 (171)
T ss_dssp EEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHH-----HHHHHCSSTTCG------------GGHHHHHHHHHHH
T ss_pred cccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHH-----HHHHhcCcccch------------hhHHHHHHHHHHH
Confidence 79999999999999999999999999775443322211 125566654210 0111112222111
Q ss_pred hccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH----------------HHHH
Q 001091 697 CALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTG----------------THLF 760 (1159)
Q Consensus 697 c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~----------------~~if 760 (1159)
....+..|..+.+... ...|||||||++||||+..+|++++|||||++||+.+. +.+.
T Consensus 66 -----~~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~ 139 (171)
T 4gp7_A 66 -----VSKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMK 139 (171)
T ss_dssp -----HHHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHH
T ss_pred -----HHHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhh
Confidence 1233455666665544 34599999999999999999999999999999999954 4333
Q ss_pred HHHHhhhc-CCcEEEEEccCcccccccCEE
Q 001091 761 KQCLMGLL-SQKTVLYTTHQLEFLDAADLV 789 (1159)
Q Consensus 761 ~~~i~g~l-~~kTvIlVTH~l~~l~~aD~I 789 (1159)
+.+..+. +|+|+|+|||+++.+..++++
T Consensus 140 -~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 140 -KSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp -HHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred -hhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 3344432 489999999999988776654
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.82 E-value=8.6e-22 Score=205.68 Aligned_cols=140 Identities=16% Similarity=0.211 Sum_probs=100.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCccC-CCCcEE-EE-----CCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHh
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIPR-ISGAAI-KV-----HGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGC 697 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~~-~~G~i~-~v-----~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac 697 (1159)
.++|+||+|||||||+++|.|++.. ..|... .. ..+++|++|++ |.++|++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~-------------- 61 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SS-------------- 61 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EE--------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hh--------------
Confidence 6899999999999999999999852 123210 11 23579999987 3344442 11
Q ss_pred ccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHH-----HccCCCEEEEeC--CCCCCCHHHHHHHHHHHHhhhcCC
Q 001091 698 ALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA-----VYSNSDVYIFDD--PFSAVDAHTGTHLFKQCLMGLLSQ 770 (1159)
Q Consensus 698 ~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARA-----ly~~a~I~LLDD--p~SALD~~t~~~if~~~i~g~l~~ 770 (1159)
+ ....+..+++.+.+||||||||++|||| ++.+|++++||| |++++|+...+.+. +.+.. .+
T Consensus 62 -~-------~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~-~~l~~--~~ 130 (178)
T 1ye8_A 62 -K-------FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVR-QIMHD--PN 130 (178)
T ss_dssp -T-------TCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHH-HHHTC--TT
T ss_pred -h-------cCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHH-HHHhc--CC
Confidence 0 0011245788889999999999999996 999999999999 99999999876654 34544 46
Q ss_pred cEEEEEcc---Ccccccc-cCEEEEEeCCeEEE
Q 001091 771 KTVLYTTH---QLEFLDA-ADLVLVMKDGKIEQ 799 (1159)
Q Consensus 771 kTvIlVTH---~l~~l~~-aD~Iivl~~G~I~e 799 (1159)
.|+|++|| +.+++.. +|+ .+|+|.+
T Consensus 131 ~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 131 VNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred CeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 78999997 4455543 665 5667765
No 72
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.81 E-value=4e-23 Score=223.05 Aligned_cols=153 Identities=14% Similarity=0.173 Sum_probs=109.5
Q ss_pred ccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEEC-------------CEEEEEecCCCCC------
Q 001091 612 IKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH-------------GKKAYVPQSSWIQ------ 671 (1159)
Q Consensus 612 ~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~-------------g~iayv~Q~pwi~------ 671 (1159)
..|+| ||++++|++++|+||+|||||||+++|+|++ | |++ .+. ..++|++|++.+|
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i-~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYF-YFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTE-EECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcE-EEeecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 46889 9999999999999999999999999999998 4 888 651 2468999987444
Q ss_pred -----CCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHH-----HHHHccCCCE
Q 001091 672 -----TGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL-----ARAVYSNSDV 741 (1159)
Q Consensus 672 -----~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaL-----ARAly~~a~I 741 (1159)
++++++| .+|.+ ++..+++++++.+ ..++ .+||||||||+++ ||+++.+|++
T Consensus 87 ~~~l~~~~~~~~-~~g~~--~~~i~~~l~~~~~------------~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~ 148 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGTL--KSEYDKAKEQNKI------------CLFE---MNINGVKQLKKSTHIKNALYIFIKPPST 148 (218)
T ss_dssp TCEEEEEEETTE-EEEEE--HHHHHHHHHTTCE------------EEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCH
T ss_pred cchhhhhhcccc-cCCCc--HHHHHHHHhCCCc------------EEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCH
Confidence 4455555 44433 3445556554322 2222 6899999999999 8999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeC
Q 001091 742 YIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKD 794 (1159)
Q Consensus 742 ~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~ 794 (1159)
.+||||++++|..+++.|.+ .+....+++| ++| +..+|.|++++|
T Consensus 149 ~~Lde~~~~~d~~~~~~i~~-~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 149 DVLLSRLLTRNTENQEQIQK-RMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHTCCCCHHHHHH-HHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHhcCCCCHHHHHH-HHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 99999999999999887754 4555556667 678 578999998865
No 73
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.76 E-value=1.1e-20 Score=221.09 Aligned_cols=155 Identities=19% Similarity=0.179 Sum_probs=124.9
Q ss_pred cccccC-CeEeeCCc--------------------EEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE----EEEEe
Q 001091 611 TIKLTD-KMKIMKGS--------------------KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----KAYVP 665 (1159)
Q Consensus 611 ~~~L~~-nl~i~~G~--------------------~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~----iayv~ 665 (1159)
..++++ |+++++|+ .++|+||+|||||||+++|.|.++|.+|+| .++|. .+|++
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI-~~~g~~~t~~~~v~ 114 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAA-KTGVVEVTMERHPY 114 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSC-CCCC----CCCEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceE-EECCeecceeEEec
Confidence 467899 99999999 999999999999999999999999999998 77763 27999
Q ss_pred cCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHH--HHHHHHHHHHHcc------
Q 001091 666 QSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG--QKQRIQLARAVYS------ 737 (1159)
Q Consensus 666 Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGG--QKQRIaLARAly~------ 737 (1159)
|++...+.|++||+.+|.+ +++.++.++..++.+. +..+ . |||| ||||++||||+.+
T Consensus 115 q~~~~~~ltv~D~~g~~~~--~~~~~~~L~~~~L~~~--------~~~~----~-lS~G~~~kqrv~la~aL~~~~~p~~ 179 (413)
T 1tq4_A 115 KHPNIPNVVFWDLPGIGST--NFPPDTYLEKMKFYEY--------DFFI----I-ISATRFKKNDIDIAKAISMMKKEFY 179 (413)
T ss_dssp ECSSCTTEEEEECCCGGGS--SCCHHHHHHHTTGGGC--------SEEE----E-EESSCCCHHHHHHHHHHHHTTCEEE
T ss_pred cccccCCeeehHhhcccch--HHHHHHHHHHcCCCcc--------CCeE----E-eCCCCccHHHHHHHHHHHhcCCCeE
Confidence 9987778899999988754 4566777777765431 1111 2 8999 9999999999999
Q ss_pred ----CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc----------CCcEEEEEccCccc
Q 001091 738 ----NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL----------SQKTVLYTTHQLEF 782 (1159)
Q Consensus 738 ----~a~I~LLDDp~SALD~~t~~~if~~~i~g~l----------~~kTvIlVTH~l~~ 782 (1159)
+||+++|||||++||+...+++.+. ++.+. ..+++++.||.++-
T Consensus 180 lV~tkpdlllLDEPtsgLD~~~~~~l~~~-l~~l~~~~l~~~g~~~~~iiliSsh~l~~ 237 (413)
T 1tq4_A 180 FVRTKVDSDITNEADGEPQTFDKEKVLQD-IRLNCVNTFRENGIAEPPIFLLSNKNVCH 237 (413)
T ss_dssp EEECCHHHHHHHHHTTCCTTCCHHHHHHH-HHHHHHHHHHHTTCSSCCEEECCTTCTTS
T ss_pred EEEecCcccccCcccccCCHHHHHHHHHH-HHHHHHHHHHhcCCCCCcEEEEecCcCCc
Confidence 9999999999999999998776543 43331 13567778887653
No 74
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.75 E-value=8.2e-20 Score=209.09 Aligned_cols=131 Identities=23% Similarity=0.239 Sum_probs=102.0
Q ss_pred cccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHH
Q 001091 613 KLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYE 691 (1159)
Q Consensus 613 ~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~ 691 (1159)
++++ ++.+++|+.++|+||+|||||||+++|+|+++|.+|.| .++|..-+.. + ..++++.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i-~i~~~~e~~~--~-----~~~~~i~----------- 220 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERII-SIEDTEEIVF--K-----HHKNYTQ----------- 220 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEE-EEESSCCCCC--S-----SCSSEEE-----------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEE-EECCeecccc--c-----cchhEEE-----------
Confidence 6788 99999999999999999999999999999999999998 8876421100 0 0011110
Q ss_pred HHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCc
Q 001091 692 EVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK 771 (1159)
Q Consensus 692 ~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~k 771 (1159)
+ ++ | |||+||++||||+..+||+++||||+++ ++ .+.+..+..|+
T Consensus 221 -------~------~~----------g----gg~~~r~~la~aL~~~p~ilildE~~~~---e~-----~~~l~~~~~g~ 265 (330)
T 2pt7_A 221 -------L------FF----------G----GNITSADCLKSCLRMRPDRIILGELRSS---EA-----YDFYNVLCSGH 265 (330)
T ss_dssp -------E------EC----------B----TTBCHHHHHHHHTTSCCSEEEECCCCST---HH-----HHHHHHHHTTC
T ss_pred -------E------Ee----------C----CChhHHHHHHHHhhhCCCEEEEcCCChH---HH-----HHHHHHHhcCC
Confidence 0 00 1 8999999999999999999999999982 32 23444444554
Q ss_pred -EEEEEccCcccccccCEEEEEeCCeE
Q 001091 772 -TVLYTTHQLEFLDAADLVLVMKDGKI 797 (1159)
Q Consensus 772 -TvIlVTH~l~~l~~aD~Iivl~~G~I 797 (1159)
|+|++||+.+....+|+|++|++|+.
T Consensus 266 ~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 266 KGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred CEEEEEEcccHHHHHhhhheehhcCCc
Confidence 89999999998888999999988853
No 75
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.75 E-value=9.2e-21 Score=215.06 Aligned_cols=116 Identities=14% Similarity=0.068 Sum_probs=94.9
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCC----C--CChHHHHHH
Q 001091 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGK----D--MRQSFYEEV 693 (1159)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~----~--~d~~~y~~v 693 (1159)
+++|++++|+||+|||||||+++|.|.++|..|. .+++|++|++.++..|++||+.+.. + +|.++..+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~ 161 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRF 161 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 8899999999999999999999999999998774 3589999999998889999997532 1 233333333
Q ss_pred HHHhccchHHHhccCCCC-ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 001091 694 LEGCALNQDIEMWADGDL-SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA 753 (1159)
Q Consensus 694 l~ac~L~~dl~~lp~Gd~-T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~ 753 (1159)
++.+..|.. .. ...||||||||+++|||+..+|+|+|||||++.+|+
T Consensus 162 ---------L~~l~~~~~~~~----~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 162 ---------VTSVKSGSDYAC----APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp ---------HHHHHTTCSCEE----EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred ---------HHHhCCCcccCC----cccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 344443433 33 347999999999999999999999999999999986
No 76
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.75 E-value=2.9e-18 Score=215.81 Aligned_cols=94 Identities=30% Similarity=0.449 Sum_probs=84.0
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEEE
Q 001091 714 VGERGINLSGGQKQRIQLARAVYSNSD--VYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVL 790 (1159)
Q Consensus 714 IGe~G~~LSGGQKQRIaLARAly~~a~--I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~Ii 790 (1159)
.+..-.+|||||||||+|||||.++|+ +|||||||++||++..+.+++ .++.+. .|+|+|+|+|+++++..||+|+
T Consensus 373 l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~-~l~~L~~~G~TVIvVeHdl~~l~~aD~ii 451 (842)
T 2vf7_A 373 LDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLS-ALENLKRGGNSLFVVEHDLDVIRRADWLV 451 (842)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHH-HHHHHHTTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHH-HHHHHHHcCCEEEEEcCCHHHHHhCCEEE
Confidence 355567899999999999999999995 999999999999999888865 455543 4899999999999999999999
Q ss_pred EE------eCCeEEEecChHHHHh
Q 001091 791 VM------KDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 791 vl------~~G~I~e~Gt~~eL~~ 808 (1159)
+| ++|+++..|+++++.+
T Consensus 452 ~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 452 DVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp EECSSSGGGCCSEEEEECGGGGGG
T ss_pred EeCCCcccCCCEEEEecCHHHHHh
Confidence 99 7999999999999987
No 77
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.74 E-value=8.6e-17 Score=198.65 Aligned_cols=254 Identities=16% Similarity=0.163 Sum_probs=197.2
Q ss_pred HHHHHHHHHHHhccchheeecccc---ccc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 001091 897 LLCQVLFQALQMGSNYWIAWATDE---KRK-VSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFR 972 (1159)
Q Consensus 897 ~~~~~~~~~~~~~~~~wl~~w~~~---~~~-~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlr 972 (1159)
+++.++..+..+...+++....+. ..+ .....++.+++++.++..++..++.+.....+.+...++|.++++++++
T Consensus 43 ~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 122 (598)
T 3qf4_B 43 FVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQR 122 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 333444455555555555443321 111 1123456777777888888888888888899999999999999999999
Q ss_pred CcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhH
Q 001091 973 APISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTAR 1052 (1159)
Q Consensus 973 aPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~i~vi~~~~~~~~~~~iPl~~~~~~~q~~Yl~tsR 1052 (1159)
.|++|||++++|+++||+++|++.+++.++..+..++...+.+++.++++....|++.++++.++++++.+..++.+..+
T Consensus 123 ~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~ 202 (598)
T 3qf4_B 123 VPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTR 202 (598)
T ss_dssp SCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998887766666666667777777777
Q ss_pred HHHHHHhhccchHHHHHHHHhcchhhhhhccchHHHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHH-H
Q 001091 1053 ELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLI-I 1131 (1159)
Q Consensus 1053 eLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~f~~~~~~~lD~~~~~~~~~~~~~rWL~~rldll~~~~~~~~~~-~ 1131 (1159)
+..+-.....+...+++.|+++|+.+||+|++|+++.+++.+..+...+........+.|.....+++..+..+++.. .
T Consensus 203 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 282 (598)
T 3qf4_B 203 KYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFG 282 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777888889999999999999999999999999999999988888877776666677777777766543332222 2
Q ss_pred HHhcCCCCCCHHHHHHHHH
Q 001091 1132 LVTLPRSAIDPSKFLQLFI 1150 (1159)
Q Consensus 1132 ~v~~~~~~~~~g~v~~~~~ 1150 (1159)
......|.+++|.+..++.
T Consensus 283 ~~l~~~g~ls~g~~~~~~~ 301 (598)
T 3qf4_B 283 GWLALKDIITVGTIATFIG 301 (598)
T ss_dssp HHHGGGTSSCHHHHHHHHT
T ss_pred HHHHHcCCCCHHHHHHHHH
Confidence 2233457789987765543
No 78
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.74 E-value=8.5e-18 Score=193.72 Aligned_cols=81 Identities=21% Similarity=0.252 Sum_probs=72.1
Q ss_pred CCCHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEE
Q 001091 720 NLSGGQKQRIQLARAVY---------SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVL 790 (1159)
Q Consensus 720 ~LSGGQKQRIaLARAly---------~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Ii 790 (1159)
.||||||||++||||+. .+|+|+|||||||+||+...+.+++. +..+ . .|+|++|| .+. .+|+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~-l~~~-~-qt~i~~th-~~~--~~~~i~ 338 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDL-AASV-P-QAIVTGTE-LAP--GAALTL 338 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHH-HHHS-S-EEEEEESS-CCT--TCSEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHH-HHhc-C-cEEEEEEe-ccc--cCCEEE
Confidence 59999999999999999 89999999999999999998887764 5444 2 89999999 454 899999
Q ss_pred EEeCCeEEEecChHHH
Q 001091 791 VMKDGKIEQSGKYEDL 806 (1159)
Q Consensus 791 vl~~G~I~e~Gt~~eL 806 (1159)
+|++|+|++.|+++++
T Consensus 339 ~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 339 RAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEETTEEEECCCTTTS
T ss_pred EEECCEEEecCCHHHH
Confidence 9999999999998876
No 79
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.72 E-value=1.9e-19 Score=200.28 Aligned_cols=140 Identities=15% Similarity=0.161 Sum_probs=90.5
Q ss_pred EEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC----------EEEEEecCCCCCC-CcHHHHHhcCCCCChHHHHHH
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------KKAYVPQSSWIQT-GTIRENILFGKDMRQSFYEEV 693 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g----------~iayv~Q~pwi~~-gTIreNIlfG~~~d~~~y~~v 693 (1159)
.++|+||+|||||||+++|.|...|.+|++ .++| .++|++|++.++. -||.||+.||...+.+.-.+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i-~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASS-WNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCcc-ccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 489999999999999999999999999998 6654 4899999988765 499999999976432221122
Q ss_pred HHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEE
Q 001091 694 LEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTV 773 (1159)
Q Consensus 694 l~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTv 773 (1159)
+......+..+.++ ..||||||||+++|||+.. +|+||||++++|+.. ..+++ .+.+.+++
T Consensus 83 i~~~~~~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~----~L~~~~~v 143 (270)
T 3sop_A 83 IEKYINEQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMK----HLSKVVNI 143 (270)
T ss_dssp HHHHHHHHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHH----HHHTTSEE
T ss_pred HHHHHHHHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHH----HHHhcCcE
Confidence 22221122222222 2699999999999999765 999999999999976 33333 33334899
Q ss_pred EEEccCccccc
Q 001091 774 LYTTHQLEFLD 784 (1159)
Q Consensus 774 IlVTH~l~~l~ 784 (1159)
|+|.|..+.+.
T Consensus 144 I~Vi~K~D~lt 154 (270)
T 3sop_A 144 IPVIAKADTMT 154 (270)
T ss_dssp EEEETTGGGSC
T ss_pred EEEEeccccCC
Confidence 99998876653
No 80
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.72 E-value=2.3e-20 Score=220.91 Aligned_cols=182 Identities=14% Similarity=0.036 Sum_probs=140.8
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccCCeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC---------
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g--------- 659 (1159)
..++++|+++.|+.. ..++++=+++++||+++|+||+|||||||+++|.|..++..|.+ .+.|
T Consensus 130 ~~l~~~~v~~~~~tg-------~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i-~~~G~r~~ev~~~ 201 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG-------VRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV-GLIGERGREVKDF 201 (438)
T ss_dssp CTTTSCCCCSBCCCS-------CHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEE-EEESCCHHHHHHH
T ss_pred CceEEeccceecCCC-------ceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEE-EEeceecHHHHHH
Confidence 357788888888632 34555557899999999999999999999999999999999988 6655
Q ss_pred ------------EEEEEecC--CCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHH
Q 001091 660 ------------KKAYVPQS--SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1159)
Q Consensus 660 ------------~iayv~Q~--pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQ 725 (1159)
+++||+|+ |...+-|+.+|+.+..+ |.+. . .+++..+ =+...+|||||
T Consensus 202 ~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae-----~~~~---~--~~~v~~~--------ld~l~~lS~g~ 263 (438)
T 2dpy_A 202 IENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAE-----DFRD---R--GQHVLLI--------MDSLTRYAMAQ 263 (438)
T ss_dssp HHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHH-----HHHT---T--TCEEEEE--------EECHHHHHHHH
T ss_pred HHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHH-----HHHh---C--CCCHHHH--------HHhHHHHHHHH
Confidence 37999994 45567899999987532 2110 0 1111111 12356799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcC-----Cc-----EEEEEccCcccccccCEEEEEeCC
Q 001091 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-----QK-----TVLYTTHQLEFLDAADLVLVMKDG 795 (1159)
Q Consensus 726 KQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~-----~k-----TvIlVTH~l~~l~~aD~Iivl~~G 795 (1159)
|||+|| ..+|++ |+|+|+.+...+ .+.+..+.+ |+ |++++||+++ .+.||++++|.||
T Consensus 264 -qrvslA---l~~p~~------t~glD~~~~~~l-~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG 331 (438)
T 2dpy_A 264 -REIALA---IGEPPA------TKGYPPSVFAKL-PALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDG 331 (438)
T ss_dssp -HHHHHH---TTCCCC------SSSCCTTHHHHH-HHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSE
T ss_pred -HHHHHH---hCCCcc------cccCCHHHHHHH-HHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCc
Confidence 999999 888887 999999998766 456665544 54 9999999999 7889999999999
Q ss_pred eEEEecChHHHHh
Q 001091 796 KIEQSGKYEDLIA 808 (1159)
Q Consensus 796 ~I~e~Gt~~eL~~ 808 (1159)
+|+..|+++++..
T Consensus 332 ~Ivl~~~~~~~~~ 344 (438)
T 2dpy_A 332 HIVLSRRLAEAGH 344 (438)
T ss_dssp EEEECHHHHHTTC
T ss_pred EEEEeCCHHHccC
Confidence 9999998877643
No 81
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.71 E-value=1.8e-15 Score=186.51 Aligned_cols=253 Identities=14% Similarity=0.190 Sum_probs=194.2
Q ss_pred HHHHHHHHHhccchheeecccc---cccCCchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 001091 899 CQVLFQALQMGSNYWIAWATDE---KRKVSREQLI-GVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAP 974 (1159)
Q Consensus 899 ~~~~~~~~~~~~~~wl~~w~~~---~~~~~~~~~l-~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraP 974 (1159)
+.++..+......+++.++.+. ........++ ..+++++++..++..++.+.....+.+...+++.++++++++.|
T Consensus 33 ~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 112 (582)
T 3b5x_A 33 ALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMP 112 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344455555555555544421 1111111222 23555666677777778888888999999999999999999999
Q ss_pred ccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 001091 975 ISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTAREL 1054 (1159)
Q Consensus 975 msFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~i~vi~~~~~~~~~~~iPl~~~~~~~q~~Yl~tsReL 1054 (1159)
++|||++++|+++||+++|++.++..+...+..++...+.+++.++++....|++.++++..+++++.+..++.+..++.
T Consensus 113 ~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 192 (582)
T 3b5x_A 113 VRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKI 192 (582)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888888899877766555555555566666666666
Q ss_pred HHHHhhccchHHHHHHHHhcchhhhhhccchHHHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HH
Q 001091 1055 ARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLII-LV 1133 (1159)
Q Consensus 1055 kRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~f~~~~~~~lD~~~~~~~~~~~~~rWL~~rldll~~~~~~~~~~~-~v 1133 (1159)
.+-.....+...+++.|+++|+.+||+|++|+++.+++.+..++..+........+.|.....+++..+..+++..+ ..
T Consensus 193 ~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 272 (582)
T 3b5x_A 193 SRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASV 272 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677788899999999999999999999999999999999999999999888888999888888877554333222 22
Q ss_pred hcCCCCCCHHHHHHHHHH
Q 001091 1134 TLPRSAIDPSKFLQLFIS 1151 (1159)
Q Consensus 1134 ~~~~~~~~~g~v~~~~~~ 1151 (1159)
....|.+++|.+..++..
T Consensus 273 ~v~~g~lt~g~l~~~~~~ 290 (582)
T 3b5x_A 273 DSIRAELTPGTFTVVFSA 290 (582)
T ss_pred HHHcCCCCHHHHHHHHHH
Confidence 233577898876655543
No 82
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.71 E-value=5.5e-17 Score=186.75 Aligned_cols=79 Identities=25% Similarity=0.389 Sum_probs=67.1
Q ss_pred CCCCCHHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEEE
Q 001091 718 GINLSGGQKQ------RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVL 790 (1159)
Q Consensus 718 G~~LSGGQKQ------RIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~Ii 790 (1159)
-..||||||| |+++|||+..+|+++||||||++||+...+.+++ .+..+. +++|+|+|||+.+....||+|+
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~-~l~~~~~~~~~vi~~sH~~~~~~~~d~~~ 324 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERYLKKIPQVILVSHDEELKDAADHVI 324 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHH-HHHHTGGGSSEEEEEESCGGGGGGCSEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEEChHHHHHhCCEEE
Confidence 4579999999 6788899999999999999999999999887765 455543 4789999999988888899999
Q ss_pred EEe--CCeE
Q 001091 791 VMK--DGKI 797 (1159)
Q Consensus 791 vl~--~G~I 797 (1159)
+|+ +|..
T Consensus 325 ~l~~~~g~s 333 (339)
T 3qkt_A 325 RISLENGSS 333 (339)
T ss_dssp EEEEETTEE
T ss_pred EEEecCCcc
Confidence 985 5643
No 83
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.71 E-value=1e-15 Score=188.53 Aligned_cols=254 Identities=14% Similarity=0.117 Sum_probs=196.1
Q ss_pred HHHHHHHHHHhccchheeecccccc-cCCc--hhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 001091 898 LCQVLFQALQMGSNYWIAWATDEKR-KVSR--EQLI-GVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRA 973 (1159)
Q Consensus 898 ~~~~~~~~~~~~~~~wl~~w~~~~~-~~~~--~~~l-~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlra 973 (1159)
++.++..+......+++.++.+.-. ..+. ..++ ..+++++++..++..++.+.....+.+...+++.++++++++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~ 111 (582)
T 3b60_A 32 IALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGM 111 (582)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3334445555555565555442111 1111 1122 2355566667777777888888899999999999999999999
Q ss_pred cccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 001091 974 PISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARE 1053 (1159)
Q Consensus 974 PmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~i~vi~~~~~~~~~~~iPl~~~~~~~q~~Yl~tsRe 1053 (1159)
|++|||++++|+++||+++|++.++..+...+..++...+.+++.++++....|++.++++..+++++.+..++.+..++
T Consensus 112 ~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 191 (582)
T 3b60_A 112 PVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRS 191 (582)
T ss_dssp CSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888889987766555555555556666666667
Q ss_pred HHHHHhhccchHHHHHHHHhcchhhhhhccchHHHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-
Q 001091 1054 LARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIIL- 1132 (1159)
Q Consensus 1054 LkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~f~~~~~~~lD~~~~~~~~~~~~~rWL~~rldll~~~~~~~~~~~~- 1132 (1159)
..+-.....++..+++.|+++|+.+||+|++|+++.+++.+..++..+........+.|.....+++..+..+++..+.
T Consensus 192 ~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 271 (582)
T 3b60_A 192 ISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAAS 271 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777889999999999999999999999999999999999999999999889999999999988776544333322
Q ss_pred HhcCCCCCCHHHHHHHHHH
Q 001091 1133 VTLPRSAIDPSKFLQLFIS 1151 (1159)
Q Consensus 1133 v~~~~~~~~~g~v~~~~~~ 1151 (1159)
.....|.+++|.+..++..
T Consensus 272 ~~v~~g~lt~g~l~~~~~~ 290 (582)
T 3b60_A 272 FPSVMDSLTAGTITVVFSS 290 (582)
T ss_dssp SSSTTSSSHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHH
Confidence 2334677888876655443
No 84
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.71 E-value=2.2e-16 Score=194.56 Aligned_cols=275 Identities=11% Similarity=0.083 Sum_probs=182.1
Q ss_pred CcchHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhccchheeeccccc-ccCCc---hhHHHHHHHHHHHHHHHHHHHH
Q 001091 873 GRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK-RKVSR---EQLIGVFIFLSGGSSFFILGRA 948 (1159)
Q Consensus 873 G~v~~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~-~~~~~---~~~l~vy~~l~~~~~~~~~~~~ 948 (1159)
|..+++.++.|++.. +..+.+.+++.++..++.+...+++.++.+.. ...+. ..+...++++.++..++.+++.
T Consensus 7 g~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (587)
T 3qf4_A 7 GGGGSKTLARYLKPY--WIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCT 84 (587)
T ss_dssp -CCCCCCGGGGTGGG--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555432 22222333344555566666667776665321 11111 2234445555666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 001091 949 VLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQ 1028 (1159)
Q Consensus 949 ~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~i~vi~~~~~~ 1028 (1159)
++....+.+...+++.++++++++.|++||+++++|+++||+++|++.+++.+...+..++...+.+++.++++....|+
T Consensus 85 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 164 (587)
T 3qf4_A 85 VFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVK 164 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999998888888888888888888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccchHHHHHHHHHHHhhhhhhHHHHHH
Q 001091 1029 VFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCG 1108 (1159)
Q Consensus 1029 ~~~~~iPl~~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~f~~~~~~~lD~~~~~~~~~~~ 1108 (1159)
+.++++..++++..+..++.+..+...+-.....+.+.+++.|+++|+.|||+|++|+.+.+++.+..+...+.......
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (587)
T 3qf4_A 165 LSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFS 244 (587)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65554433333333333333334444444445667899999999999999999999999999999888887776654443
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCCHHHHHHHH
Q 001091 1109 TMEWLCLRINLLFNFAFFLVLI-ILVTLPRSAIDPSKFLQLF 1149 (1159)
Q Consensus 1109 ~~rWL~~rldll~~~~~~~~~~-~~v~~~~~~~~~g~v~~~~ 1149 (1159)
...+......++..+..+++.. .......|.+++|.+..++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~ 286 (587)
T 3qf4_A 245 LIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYT 286 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHH
Confidence 3333333333333322222111 1222335778888665443
No 85
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.69 E-value=1.1e-18 Score=197.03 Aligned_cols=158 Identities=12% Similarity=0.139 Sum_probs=112.2
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-------------------EEEEEecCCC-C-CCCcH
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------------KKAYVPQSSW-I-QTGTI 675 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------------------~iayv~Q~pw-i-~~gTI 675 (1159)
|+++++|+.++++||+||||||+++.|.|.++|.+|+| .+.| .++|++|++- . +..|+
T Consensus 94 ~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V-~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v 172 (302)
T 3b9q_A 94 QLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV-LMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVL 172 (302)
T ss_dssp CCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE-EEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHH
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeE-EEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHH
Confidence 56788999999999999999999999999999999999 6643 2799999986 4 45699
Q ss_pred HHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCH
Q 001091 676 RENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD--VYIFDDPFSAVDA 753 (1159)
Q Consensus 676 reNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~--I~LLDDp~SALD~ 753 (1159)
+||+.++...+.+ ..+++.+++. +-++..+ ..|| |||++||||+..+|+ +++|| ||+++|+
T Consensus 173 ~e~l~~~~~~~~d--~~lldt~gl~-------~~~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~ 235 (302)
T 3b9q_A 173 SKAVKRGKEEGYD--VVLCDTSGRL-------HTNYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNM 235 (302)
T ss_dssp HHHHHHHHHTTCS--EEEECCCCCS-------SCCHHHH----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGG
T ss_pred HHHHHHHHHcCCc--chHHhcCCCC-------cchhHHH----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCH
Confidence 9999875321100 0011111111 1111222 2488 999999999999999 99999 9999999
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEccC---------ccccc-ccCEEEEEeCCeE
Q 001091 754 HTGTHLFKQCLMGLLSQKTVLYTTHQ---------LEFLD-AADLVLVMKDGKI 797 (1159)
Q Consensus 754 ~t~~~if~~~i~g~l~~kTvIlVTH~---------l~~l~-~aD~Iivl~~G~I 797 (1159)
.....-|++ -.|.|+|++||- ++... ..+.|..+.+|+.
T Consensus 236 ~~~~~~~~~-----~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 236 LPQAREFNE-----VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHHHHHH-----HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHHHHHHHH-----hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 864322211 137899999992 22332 3578899998864
No 86
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.66 E-value=1.3e-16 Score=194.34 Aligned_cols=150 Identities=15% Similarity=0.097 Sum_probs=113.0
Q ss_pred eEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCc-EEEECCEEEEEecCCCCCCCcHHHHHh-cCCCCChHHHHHHHH
Q 001091 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGA-AIKVHGKKAYVPQSSWIQTGTIRENIL-FGKDMRQSFYEEVLE 695 (1159)
Q Consensus 618 l~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~-i~~v~g~iayv~Q~pwi~~gTIreNIl-fG~~~d~~~y~~vl~ 695 (1159)
..+++|+.++|+|++|||||||++.++|...+. |. + +.|++|++. .++++|.. +|- +.+.+ .
T Consensus 276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~v------i~~~~ee~~---~~l~~~~~~~g~--~~~~~---~- 339 (525)
T 1tf7_A 276 GGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERA------ILFAYEESR---AQLLRNAYSWGM--DFEEM---E- 339 (525)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCE------EEEESSSCH---HHHHHHHHTTSC--CHHHH---H-
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCE------EEEEEeCCH---HHHHHHHHHcCC--CHHHH---H-
Confidence 478999999999999999999999999998874 54 3 567788862 35666652 332 21111 1
Q ss_pred HhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH-----HHHHHHHHHHhhhc-C
Q 001091 696 GCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAH-----TGTHLFKQCLMGLL-S 769 (1159)
Q Consensus 696 ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~-----t~~~if~~~i~g~l-~ 769 (1159)
..|...........|||||+||+++||++..+|+++++| |+++||.. ..+.+. +.++.+. .
T Consensus 340 -----------~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~-~ll~~l~~~ 406 (525)
T 1tf7_A 340 -----------RQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVI-GVTGYAKQE 406 (525)
T ss_dssp -----------HTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHH-HHHHHHHHT
T ss_pred -----------hCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHH-HHHHHHHhC
Confidence 112222333445689999999999999999999999999 99999998 665543 3444332 5
Q ss_pred CcEEEEEccCc----------cccc-ccCEEEEEeCCe
Q 001091 770 QKTVLYTTHQL----------EFLD-AADLVLVMKDGK 796 (1159)
Q Consensus 770 ~kTvIlVTH~l----------~~l~-~aD~Iivl~~G~ 796 (1159)
|.|+|++||.. ..+. .||+|++|++|+
T Consensus 407 g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 407 EITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp TCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred CCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 89999999998 6665 499999999887
No 87
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.65 E-value=1.7e-14 Score=178.20 Aligned_cols=221 Identities=17% Similarity=0.122 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHH
Q 001091 930 IGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLA 1009 (1159)
Q Consensus 930 l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~ 1009 (1159)
+.+++++.++..++.+++.+.....+.+...+++.++++++++.|++|||++++|+++||+++|++.++..+...+..++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~ 144 (595)
T 2yl4_A 65 CLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGL 144 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666677777777888889999999999999999999999999999999999999999999999999898999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccchHHHH
Q 001091 1010 FALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFL 1089 (1159)
Q Consensus 1010 ~~~~~~l~~i~vi~~~~~~~~~~~iPl~~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~f~ 1089 (1159)
..++.+++.++++....|++.++++..+++++.+..++.+..++..+-.....+...+++.|+++|+.+||+|++|+++.
T Consensus 145 ~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~ 224 (595)
T 2yl4_A 145 RAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEI 224 (595)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHH
Confidence 99999888888888888887655433333222333333333333333333445678899999999999999999999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHhcCCCCCCHHHHHHHHH
Q 001091 1090 LRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLII-LVTLPRSAIDPSKFLQLFI 1150 (1159)
Q Consensus 1090 ~~~~~~lD~~~~~~~~~~~~~rWL~~rldll~~~~~~~~~~~-~v~~~~~~~~~g~v~~~~~ 1150 (1159)
+++.+..+...+........+.|.....++++.+..+++..+ ......|.+++|.+..++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~ 286 (595)
T 2yl4_A 225 EKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLM 286 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999988888777777887777777766543322222 2222357789887655443
No 88
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.65 E-value=7.9e-18 Score=193.62 Aligned_cols=158 Identities=12% Similarity=0.136 Sum_probs=114.3
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-------------------EEEEEecCCC--CCCCcH
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------------KKAYVPQSSW--IQTGTI 675 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------------------~iayv~Q~pw--i~~gTI 675 (1159)
|+++++|+.++++||+||||||+++.|.|.++|.+|+| .+.| .++|++|++- .+..|+
T Consensus 151 ~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V-~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv 229 (359)
T 2og2_A 151 QLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV-LMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVL 229 (359)
T ss_dssp CCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE-EEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHH
T ss_pred ceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEE-EEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhH
Confidence 67788999999999999999999999999999999998 6643 2799999986 456799
Q ss_pred HHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCH
Q 001091 676 RENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD--VYIFDDPFSAVDA 753 (1159)
Q Consensus 676 reNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~--I~LLDDp~SALD~ 753 (1159)
+|||.++...+.+ ..+++.+++. +-++..+ ..|| |||++||||+..+|+ +++|| ||+++|+
T Consensus 230 ~e~l~~~~~~~~d--~~lldt~Gl~-------~~~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~ 292 (359)
T 2og2_A 230 SKAVKRGKEEGYD--VVLCDTSGRL-------HTNYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNM 292 (359)
T ss_dssp HHHHHHHHHTTCS--EEEEECCCCS-------SCCHHHH----HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGG
T ss_pred HHHHHHHHhCCCH--HHHHHhcCCC-------hhhhhHH----HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCH
Confidence 9999875321000 0111111211 1112222 2488 999999999999999 99999 9999999
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEccC---------ccccc-ccCEEEEEeCCeE
Q 001091 754 HTGTHLFKQCLMGLLSQKTVLYTTHQ---------LEFLD-AADLVLVMKDGKI 797 (1159)
Q Consensus 754 ~t~~~if~~~i~g~l~~kTvIlVTH~---------l~~l~-~aD~Iivl~~G~I 797 (1159)
.....-|++ ..+.|+|++||- ++... ..+.|..+..|+.
T Consensus 293 ~~~~~~~~~-----~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 293 LPQAREFNE-----VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHHHHHH-----HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHHHHHHHH-----hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 865432221 137899999993 23332 3578999988863
No 89
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.64 E-value=9e-17 Score=207.33 Aligned_cols=172 Identities=15% Similarity=0.161 Sum_probs=122.0
Q ss_pred ccEEEee-----eEEEeCCcccccCCCcccccC-CeEeeC-------CcEEEEEcCCCCChhHHHHHHhCCccCCCCcEE
Q 001091 589 VAIDIEA-----GEYAWDAREENFKKPTIKLTD-KMKIMK-------GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI 655 (1159)
Q Consensus 589 ~~I~~~~-----~sf~w~~~~~~~~~~~~~L~~-nl~i~~-------G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~ 655 (1159)
..|+++| +++.|+.+ .++++| +|.+++ |++++|+||+||||||||+.+ |.+.+.
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~-------~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~----- 815 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD-------DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM----- 815 (1022)
T ss_dssp CCEEEEEECCCC------CC-------CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH-----
T ss_pred ceEEEEeccccEEEEEecCC-------ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH-----
Confidence 4699999 88877432 578899 999987 999999999999999999999 988652
Q ss_pred EECCEEE-EEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHH
Q 001091 656 KVHGKKA-YVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1159)
Q Consensus 656 ~v~g~ia-yv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARA 734 (1159)
.+++ ||||++. .-|+.|||..- .++.+++. .+-.++|+|+++ +++||+
T Consensus 816 ---aqiG~~Vpq~~~--~l~v~d~I~~r--------------ig~~d~~~-----------~~~stf~~em~~-~a~al~ 864 (1022)
T 2o8b_B 816 ---AQMGCYVPAEVC--RLTPIDRVFTR--------------LGASDRIM-----------SGESTFFVELSE-TASILM 864 (1022)
T ss_dssp ---HTTTCCEESSEE--EECCCSBEEEE--------------CC--------------------CHHHHHHHH-HHHHHH
T ss_pred ---hheeEEeccCcC--CCCHHHHHHHH--------------cCCHHHHh-----------hchhhhHHHHHH-HHHHHH
Confidence 2344 9999973 56788887420 12222221 112467887775 999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-C-CcEEEEEccCcccccc-cCEEEEEeCCeEE--EecChHH
Q 001091 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIE--QSGKYED 805 (1159)
Q Consensus 735 ly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~-~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~--e~Gt~~e 805 (1159)
+..+|+++|||||++++|+..+..+...++..+. + |+|+|++||..+.... +|++.++ +|++. +.|+.++
T Consensus 865 la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 865 HATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENECED 939 (1022)
T ss_dssp HCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-------
T ss_pred hCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCccc
Confidence 9999999999999999999987777777776654 3 8899999999998754 8988886 58887 4555433
No 90
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.63 E-value=5.1e-19 Score=205.83 Aligned_cols=167 Identities=18% Similarity=0.158 Sum_probs=136.7
Q ss_pred cccCCeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCC-CCcEEEEC--------CEEEEEec-----CCCCCCCcHHHH
Q 001091 613 KLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-SGAAIKVH--------GKKAYVPQ-----SSWIQTGTIREN 678 (1159)
Q Consensus 613 ~L~~nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~-~G~i~~v~--------g~iayv~Q-----~pwi~~gTIreN 678 (1159)
.+++ +.+++|+.++|+||+|||||||+++|+|++++. +|.|..+. +.++||+| ++..|+++|++|
T Consensus 127 ~l~~-l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~ 205 (372)
T 2ewv_A 127 KVLE-LCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAA 205 (372)
T ss_dssp SHHH-HTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHH
T ss_pred HHHH-HhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHH
Confidence 3444 237899999999999999999999999999998 89883332 35789999 899999999999
Q ss_pred HhcCCCC-------ChHHHHHHHHHhccc-----------------hH------------HHhccCCCCccccCCCCCCC
Q 001091 679 ILFGKDM-------RQSFYEEVLEGCALN-----------------QD------------IEMWADGDLSVVGERGINLS 722 (1159)
Q Consensus 679 IlfG~~~-------d~~~y~~vl~ac~L~-----------------~d------------l~~lp~Gd~T~IGe~G~~LS 722 (1159)
+..+.+. |++..+.+++++... +- ...++.+.++.|++++..+|
T Consensus 206 L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~qrl~~~~ 285 (372)
T 2ewv_A 206 LREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLPKI 285 (372)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEEEEEECS
T ss_pred hhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEEEeEecC
Confidence 9875444 888888888876431 10 12357889999999999999
Q ss_pred HHHHHHHHHHHHHccCCCE--EEEeCCCCCCCHHH--H------HHHHHHHHhhhcCCcEEEEEccCccc
Q 001091 723 GGQKQRIQLARAVYSNSDV--YIFDDPFSAVDAHT--G------THLFKQCLMGLLSQKTVLYTTHQLEF 782 (1159)
Q Consensus 723 GGQKQRIaLARAly~~a~I--~LLDDp~SALD~~t--~------~~if~~~i~g~l~~kTvIlVTH~l~~ 782 (1159)
|| ||+++||+++.+|+| +|+||++|++|... + +.+.++.+..+.+|+|.+.++|+++.
T Consensus 286 ~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 286 GG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp SS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred CC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 99 899999999999999 99999999999752 1 23567777778899999999999874
No 91
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.62 E-value=6.3e-16 Score=196.12 Aligned_cols=155 Identities=23% Similarity=0.341 Sum_probs=111.6
Q ss_pred CCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCC-----hHHHHHHHHHh-ccchHHHhccCCCCcc-ccCC
Q 001091 645 GEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMR-----QSFYEEVLEGC-ALNQDIEMWADGDLSV-VGER 717 (1159)
Q Consensus 645 Ge~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d-----~~~y~~vl~ac-~L~~dl~~lp~Gd~T~-IGe~ 717 (1159)
+-+.|..|+| .++|.-- +-+.+.|+.||+.|....+ ........+.. ...+.+..+ |.... .+..
T Consensus 390 ~rl~~~~~~V-~i~G~~i-----~~~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~v--gL~~l~l~r~ 461 (916)
T 3pih_A 390 RRLNREALSV-KINGLNI-----HEFTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDV--GLEYLTLSRS 461 (916)
T ss_dssp CCBCTTGGGE-EETTEEH-----HHHHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTT--TCTTCBTTSB
T ss_pred ccCChHhcCc-EECCccH-----HHhhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHc--CCccccccCC
Confidence 4567788888 8887421 2245678899987643221 11111111110 001122222 33221 3456
Q ss_pred CCCCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEEEEE--
Q 001091 718 GINLSGGQKQRIQLARAVYSNSD--VYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVM-- 792 (1159)
Q Consensus 718 G~~LSGGQKQRIaLARAly~~a~--I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~Iivl-- 792 (1159)
..+|||||||||+|||||.++|+ +|||||||++||++..+.+++ .++.+. +|+|+|+|||+++++..||+|++|
T Consensus 462 ~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~-~L~~L~~~G~TvivVtHd~~~~~~aD~ii~lgp 540 (916)
T 3pih_A 462 ATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIK-TLKKLRDLGNTVIVVEHDEEVIRNADHIIDIGP 540 (916)
T ss_dssp GGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHH-HHHHTTTTTCEEEEECCCHHHHHTCSEEEEEES
T ss_pred cccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEcC
Confidence 67899999999999999999887 999999999999999888865 466554 489999999999999999999999
Q ss_pred ----eCCeEEEecChHHHHh
Q 001091 793 ----KDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 793 ----~~G~I~e~Gt~~eL~~ 808 (1159)
++|+|+.+|+++|+.+
T Consensus 541 gag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 541 GGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp SSGGGCSEEEEEECHHHHHH
T ss_pred CcccCCCEEEEeechhhhhc
Confidence 8999999999999987
No 92
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.62 E-value=3.2e-16 Score=199.72 Aligned_cols=170 Identities=15% Similarity=0.079 Sum_probs=121.9
Q ss_pred CccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHH--------hCCccCCCCcEEEEC
Q 001091 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSI--------LGEIPRISGAAIKVH 658 (1159)
Q Consensus 588 ~~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~l--------lGe~~~~~G~i~~v~ 658 (1159)
+..++++++....-.. .....++++| +|++++|++++|+||+||||||+++.+ .|.+.|.++..
T Consensus 629 ~~~i~i~~~rHP~le~---~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~---- 701 (934)
T 3thx_A 629 QGRIILKASRHACVEV---QDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE---- 701 (934)
T ss_dssp SCEEEEEEECCTTTTT---C--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE----
T ss_pred CcceEeecCccchhhh---cCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc----
Confidence 3468888876544221 0123578889 999999999999999999999999999 55444433221
Q ss_pred CEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHH--c
Q 001091 659 GKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV--Y 736 (1159)
Q Consensus 659 g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAl--y 736 (1159)
++.+ +.| +...++.+++ -.++|+|++++..+|+++ .
T Consensus 702 --~~~~------------d~i--------------~~~ig~~d~l--------------~~~lStf~~e~~~~a~il~~a 739 (934)
T 3thx_A 702 --VSIV------------DCI--------------LARVGAGDSQ--------------LKGVSTFMAEMLETASILRSA 739 (934)
T ss_dssp --EECC------------SEE--------------EEECC-----------------------CHHHHHHHHHHHHHHHC
T ss_pred --chHH------------HHH--------------HHhcCchhhH--------------HHhHhhhHHHHHHHHHHHHhc
Confidence 1110 000 0001111111 235889999999999988 8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHH
Q 001091 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDL 806 (1159)
Q Consensus 737 ~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL 806 (1159)
.+|+++|||||++++|+..+..+...++..+. .|+|+|++||..+....||++..++||++...++.+++
T Consensus 740 ~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 740 TKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp CTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcE
Confidence 99999999999999999998888776666554 38999999999988888999999999999988877665
No 93
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.62 E-value=9.6e-18 Score=176.59 Aligned_cols=147 Identities=18% Similarity=0.206 Sum_probs=107.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-----------EEEEEecCCCCCCCcHHHHHhcCCCCChHHHH
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYE 691 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-----------~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~ 691 (1159)
|+.++|+||+|||||||++.|.|.++ .+| + .++| +++|++|+. +++ ++|+.-
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i-~~~g~~~~~~~~~~~~ig~~~~~~---~g~-~~~l~~---------- 63 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-V-PVDGFYTEEVRQGGRRIGFDVVTL---SGT-RGPLSR---------- 63 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-C-CCEEEECCEEETTSSEEEEEEEET---TSC-EEEEEE----------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-E-EEcCEecchhHhhhceEEEEEEec---ccc-eehhhc----------
Confidence 78999999999999999999999998 888 7 6544 578999886 443 233210
Q ss_pred HHHHHhccchHHHhcc-CCCCccccCCCCCCCHHHHHHH-HHHH---HHccCCCEEEEeC--CCCCCCHHHHHHHHHHHH
Q 001091 692 EVLEGCALNQDIEMWA-DGDLSVVGERGINLSGGQKQRI-QLAR---AVYSNSDVYIFDD--PFSAVDAHTGTHLFKQCL 764 (1159)
Q Consensus 692 ~vl~ac~L~~dl~~lp-~Gd~T~IGe~G~~LSGGQKQRI-aLAR---Aly~~a~I~LLDD--p~SALD~~t~~~if~~~i 764 (1159)
+. + ..+ ...+..+|+.|.++|||||+++ +|+| |+.++||++|||| |+...|....+.+ ++.+
T Consensus 64 -------~~--~-~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l-~~~l 132 (189)
T 2i3b_A 64 -------VG--L-EPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAV-RQTL 132 (189)
T ss_dssp -------CC--C-CCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHH-HHHH
T ss_pred -------cc--c-cCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHH-HHHH
Confidence 00 0 000 1122478999999999999999 5566 7899999999999 8888888764433 3333
Q ss_pred hhhcCCcEEEE--Ec--cCcccccccCEEEEEeCCeEEEec
Q 001091 765 MGLLSQKTVLY--TT--HQLEFLDAADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 765 ~g~l~~kTvIl--VT--H~l~~l~~aD~Iivl~~G~I~e~G 801 (1159)
. +.+|+|+ +| |+.+ ++.+|+|..+++|+|.+..
T Consensus 133 ~---~~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 133 S---TPGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp H---CSSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred h---CCCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 3 3457775 44 8876 6778899889999998753
No 94
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.61 E-value=4e-18 Score=182.30 Aligned_cols=139 Identities=14% Similarity=0.217 Sum_probs=105.8
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCC---CcHHHHHhc--CC--CCChHHHHH
Q 001091 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQT---GTIRENILF--GK--DMRQSFYEE 692 (1159)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~---gTIreNIlf--G~--~~d~~~y~~ 692 (1159)
.++|++++|+||+|||||||++.|.|.+.| +++|++|++.+++ -|+++|+.+ +. ..|.++..+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLE 72 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHH
Confidence 578999999999999999999999998875 4689999998874 367777654 33 345667777
Q ss_pred HHHHhccchHHHhccCCCCccccCCCCCCCHH----HHHHHHHHHHHccCCCEEEEeCCCCC-------CCHHHHHHHHH
Q 001091 693 VLEGCALNQDIEMWADGDLSVVGERGINLSGG----QKQRIQLARAVYSNSDVYIFDDPFSA-------VDAHTGTHLFK 761 (1159)
Q Consensus 693 vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGG----QKQRIaLARAly~~a~I~LLDDp~SA-------LD~~t~~~if~ 761 (1159)
.++..++.+.+.. .+.++|+| |+||+++||++..+++++++|||+++ ||+..+..+.+
T Consensus 73 ~l~~~~~~~~~~~-----------~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r 141 (211)
T 3asz_A 73 HAQALLRGLPVEM-----------PVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIR 141 (211)
T ss_dssp HHHHHHTTCCEEE-----------CCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHH
T ss_pred HHHHHHcCCCcCC-----------CcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHH
Confidence 7766655443322 24456666 46899999999999999999999999 99998877655
Q ss_pred HHHhhh--cCCcEEEEEccCc
Q 001091 762 QCLMGL--LSQKTVLYTTHQL 780 (1159)
Q Consensus 762 ~~i~g~--l~~kTvIlVTH~l 780 (1159)
. +... .+|+|++.++|+.
T Consensus 142 ~-l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 142 R-LKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp H-HHHHHHHSCCCHHHHHHHH
T ss_pred H-HHHHHHHhCCCHHHHHHHH
Confidence 3 4332 3589999999984
No 95
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.61 E-value=6.4e-17 Score=179.01 Aligned_cols=130 Identities=21% Similarity=0.167 Sum_probs=99.4
Q ss_pred ccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCC-CCcEEEECC-EEEEEecCCCCCCCcHHHHHhcCCCCChH
Q 001091 612 IKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-SGAAIKVHG-KKAYVPQSSWIQTGTIRENILFGKDMRQS 688 (1159)
Q Consensus 612 ~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~-~G~i~~v~g-~iayv~Q~pwi~~gTIreNIlfG~~~d~~ 688 (1159)
++|++ + +++|++++|+||+|||||||+++|+|+++|. +|+| .+.| .+.|++|++.- +
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I-~~~g~~i~~~~~~~~~----------~------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHI-ITIEDPIEYVFKHKKS----------I------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEE-EEEESSCCSCCCCSSS----------E-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEE-EEcCCcceeecCCcce----------e-------
Confidence 46777 7 8999999999999999999999999999998 9998 5543 46666654310 0
Q ss_pred HHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc
Q 001091 689 FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768 (1159)
Q Consensus 689 ~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l 768 (1159)
. + +.++|....++ |++||||+.++||++++|||+ |+++...+++ ...
T Consensus 75 ----------v-------~---q~~~gl~~~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l~----~~~ 121 (261)
T 2eyu_A 75 ----------V-------N---QREVGEDTKSF------ADALRAALREDPDVIFVGEMR---DLETVETALR----AAE 121 (261)
T ss_dssp ----------E-------E---EEEBTTTBSCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH----HHH
T ss_pred ----------e-------e---HHHhCCCHHHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH----HHc
Confidence 0 0 01233322333 899999999999999999999 9988655443 334
Q ss_pred CCcEEEEEccCcccccccCEEEEEeC
Q 001091 769 SQKTVLYTTHQLEFLDAADLVLVMKD 794 (1159)
Q Consensus 769 ~~kTvIlVTH~l~~l~~aD~Iivl~~ 794 (1159)
.|+|++++||..+....+|++++|..
T Consensus 122 ~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 122 TGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp TTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred cCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 68999999999987777899887753
No 96
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.60 E-value=1.7e-15 Score=152.80 Aligned_cols=81 Identities=26% Similarity=0.367 Sum_probs=68.8
Q ss_pred CCCCCCCHHHHHHHHHH------HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCE
Q 001091 716 ERGINLSGGQKQRIQLA------RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADL 788 (1159)
Q Consensus 716 e~G~~LSGGQKQRIaLA------RAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~ 788 (1159)
....+||||||||++|| ||+..+|++++|||||++||++..+.+. +.+..+. +|+|+|+|||+.+....||+
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiiivsH~~~~~~~~d~ 131 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQVILVSHDEELKDAADH 131 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHH-HHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHH-HHHHHHHccCCEEEEEEChHHHHHhCCE
Confidence 34678999999999876 9999999999999999999999987765 4566553 47999999999987788999
Q ss_pred EEEE--eCCeE
Q 001091 789 VLVM--KDGKI 797 (1159)
Q Consensus 789 Iivl--~~G~I 797 (1159)
|++| ++|..
T Consensus 132 ii~l~~~~g~s 142 (148)
T 1f2t_B 132 VIRISLENGSS 142 (148)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEcCCCeE
Confidence 9999 46643
No 97
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.60 E-value=1.4e-14 Score=178.19 Aligned_cols=219 Identities=11% Similarity=0.080 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCChhHHHHHhhcCHHHHHhhHHHHHHHHHHH
Q 001091 932 VFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFA 1011 (1159)
Q Consensus 932 vy~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vlraPmsFFD~tp~GrIlNRfS~D~~~vD~~lp~~l~~~~~~ 1011 (1159)
+++++.++..++.+++.+.....+.+...+++.++++++++.|++|||++++|+++||+++|++.+++.+...+..++..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~ 145 (578)
T 4a82_A 66 ALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLD 145 (578)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566677777788889999999999999999999999999999999999999999999999888777777777
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccchHHHHHHHHhcchhhhhhccchHHHHHH
Q 001091 1012 LIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLR 1091 (1159)
Q Consensus 1012 ~~~~l~~i~vi~~~~~~~~~~~iPl~~~~~~~q~~Yl~tsReLkRL~~~srSPi~shf~Etl~Gl~tIRAf~~e~~f~~~ 1091 (1159)
.+.+++.++++....|++.++.+..+++++.+..++.+..++..+-.....++..+++.|+++|+.+||+|++|+++.++
T Consensus 146 ~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~ 225 (578)
T 4a82_A 146 CITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKN 225 (578)
T ss_dssp HHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHH
Confidence 88888888888888888777665555555555666666667777777778899999999999999999999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCCCHHHHHHHHH
Q 001091 1092 SHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLV-LIILVTLPRSAIDPSKFLQLFI 1150 (1159)
Q Consensus 1092 ~~~~lD~~~~~~~~~~~~~rWL~~rldll~~~~~~~~-~~~~v~~~~~~~~~g~v~~~~~ 1150 (1159)
+.+..++..+........+.+...-.+++..+..+++ .+.......|.+++|.+..++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~ 285 (578)
T 4a82_A 226 FDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVG 285 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHH
Confidence 9888877766655443333333333343333221111 1111122356788887665543
No 98
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.60 E-value=3e-18 Score=177.36 Aligned_cols=98 Identities=18% Similarity=0.190 Sum_probs=79.5
Q ss_pred cEEEEEcCCCCChhHHHHHHhCCccCC---CCcEEEECCE-----------------EE----EEecCCCCCCCcHHHHH
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVHGK-----------------KA----YVPQSSWIQTGTIRENI 679 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe~~~~---~G~i~~v~g~-----------------ia----yv~Q~pwi~~gTIreNI 679 (1159)
+.++|+|++|||||||+++|+|++++. .|.| .++|. ++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I-~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVV-KRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEE-EC------------CHHHHHHHHTCEEEEECSSEEEE---EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEE-EEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec--
Confidence 589999999999999999999999998 7887 65541 34 778887776 222
Q ss_pred hcCCCCChHHHHHHHHHhccchHHHh-ccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEE
Q 001091 680 LFGKDMRQSFYEEVLEGCALNQDIEM-WADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVY 742 (1159)
Q Consensus 680 lfG~~~d~~~y~~vl~ac~L~~dl~~-lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~ 742 (1159)
+ +++. .+++++.++. +| |++|.|||+ |||||||||+||||++++|+++
T Consensus 77 --~---~~~~------~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 --V---SEEE------GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp --C---CHHH------HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred --C---Chhh------hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 2221 6788889998 99 999999995 9999999999999999999875
No 99
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.60 E-value=2.5e-18 Score=183.75 Aligned_cols=165 Identities=11% Similarity=0.041 Sum_probs=100.0
Q ss_pred CcccccCCeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEE---------CCEEEEEecCCCCCC-CcHHHHH
Q 001091 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV---------HGKKAYVPQSSWIQT-GTIRENI 679 (1159)
Q Consensus 610 ~~~~L~~nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v---------~g~iayv~Q~pwi~~-gTIreNI 679 (1159)
..++++| .++++|++++|+||+|||||||+++|.|.++...+.+ .+ ...++|++|++..|. .|++||+
T Consensus 8 ~~~~~~~-~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l 85 (207)
T 1znw_A 8 TKPTARG-QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSV-SATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGEL 85 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECC-CEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred CCcCCCC-CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcc-cccccCCcccccCCCeeEecCHHHHHHHHhcCCc
Confidence 3567776 7899999999999999999999999999986322221 11 124789999987654 4666666
Q ss_pred hcCCC---------CChHHHHHHHHHh-ccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHH---HHccCCCEEEEeC
Q 001091 680 LFGKD---------MRQSFYEEVLEGC-ALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR---AVYSNSDVYIFDD 746 (1159)
Q Consensus 680 lfG~~---------~d~~~y~~vl~ac-~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLAR---Aly~~a~I~LLDD 746 (1159)
.+... ...+..++.++.. .+. . ...+.|.+.++-..++ |+..+|++++|||
T Consensus 86 ~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~-------------~---~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDe 149 (207)
T 1znw_A 86 LEWAEIHGGLHRSGTLAQPVRAAAATGVPVL-------------I---EVDLAGARAIKKTMPEAVTVFLAPPSWQDLQA 149 (207)
T ss_dssp EEEEEEGGGTEEEEEEHHHHHHHHHHTCCEE-------------E---ECCHHHHHHHHHHCTTSEEEEEECSCHHHHHH
T ss_pred eeehhhcCchhhcCCcHHHHHHHHHcCCeEE-------------E---EeCHHHHHHHHHhcCCcEEEEEECCCHHHHHH
Confidence 42210 1122222222211 000 0 0234455544444444 8889999999999
Q ss_pred CCCCC----CHHHHHHHHHHHHhhhc--CCcEEEEEccCccccc-ccCEEEEEe
Q 001091 747 PFSAV----DAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMK 793 (1159)
Q Consensus 747 p~SAL----D~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~-~aD~Iivl~ 793 (1159)
|++++ |+...+.+. +.+..+. .+.|+|+|||+++... .||+|++|.
T Consensus 150 p~~~l~~~~d~~~~~~l~-~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 150 RLIGRGTETADVIQRRLD-TARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHTTSCSCHHHHHHHHH-HHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHhcCCCCHHHHHHHHH-HHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99998 566666554 4455543 4789999999999875 599999984
No 100
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.59 E-value=1.7e-15 Score=190.68 Aligned_cols=134 Identities=20% Similarity=0.330 Sum_probs=100.7
Q ss_pred CCCCcHHHHHhcCCCCC--hH-------HHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCC-
Q 001091 670 IQTGTIRENILFGKDMR--QS-------FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS- 739 (1159)
Q Consensus 670 i~~gTIreNIlfG~~~d--~~-------~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a- 739 (1159)
+.+.||.|++.|.+... ++ ..+++.+.. +.++.+--++. ..+....+|||||||||+||+|+.++|
T Consensus 449 ~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl---~~L~~vGL~~l-~ldR~~~tLSGGEkQRV~LA~aL~~~~~ 524 (972)
T 2r6f_A 449 VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---GFLQNVGLDYL-TLSRSAGTLSGGEAQRIRLATQIGSRLT 524 (972)
T ss_dssp HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH---HHHHHHTCTTS-BSSSBGGGCCHHHHHHHHHHHHHTTCCC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHhhhCCCCcc-ccCCccccCCHHHHHHHHHHHHHhhCCC
Confidence 46789999999865432 21 111222221 11222221211 124456799999999999999999985
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEEEEE------eCCeEEEecChHHHHh
Q 001091 740 -DVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVM------KDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 740 -~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~Iivl------~~G~I~e~Gt~~eL~~ 808 (1159)
++|||||||++||++..+.+++ .++.+. .|+|||+|+|+++++..||+|++| ++|+|+..|+++++.+
T Consensus 525 ~~llILDEPTagLdp~~~~~L~~-~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 525 GVLYVLDEPSIGLHQRDNDRLIA-TLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp SCEEEEECTTTTCCGGGHHHHHH-HHHHHHTTTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred CCEEEEeCcccCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 9999999999999999888875 455554 489999999999999999999999 7999999999999976
No 101
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.58 E-value=1.7e-16 Score=182.51 Aligned_cols=190 Identities=14% Similarity=0.118 Sum_probs=131.6
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccCCeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCC
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW 669 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pw 669 (1159)
.++.+++++.|+.. ..++++-++|.+||+++|+||+|||||||++.|.|..+|+.|.+ .+.| |.+.
T Consensus 45 ~i~~~~l~~~~~tg-------~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i-~~~G------~~~~ 110 (347)
T 2obl_A 45 PLLRQVIDQPFILG-------VRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVL-ALIG------ERGR 110 (347)
T ss_dssp STTCCCCCSEECCS-------CHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEE-EEES------CCHH
T ss_pred CeeecccceecCCC-------CEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEE-EEec------ccHH
Confidence 46777888777632 34565578899999999999999999999999999999988876 4443 2210
Q ss_pred --------CCCCcHHHHHhcCCCCC---hHHHHHHHHHhccchHHHhccCCCCcc-ccCCCCCCCHHHHHHHHHHHHHcc
Q 001091 670 --------IQTGTIRENILFGKDMR---QSFYEEVLEGCALNQDIEMWADGDLSV-VGERGINLSGGQKQRIQLARAVYS 737 (1159)
Q Consensus 670 --------i~~gTIreNIlfG~~~d---~~~y~~vl~ac~L~~dl~~lp~Gd~T~-IGe~G~~LSGGQKQRIaLARAly~ 737 (1159)
+..+..+..+.+....+ .+++.....++.+.+.+.. .|.+.. +-+.-.+||+|| |||++| ..
T Consensus 111 ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la---l~ 184 (347)
T 2obl_A 111 EVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA---SG 184 (347)
T ss_dssp HHHHHHTTSCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH---TT
T ss_pred HHHHHHHhhhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH---cC
Confidence 00000111122222222 3556666666665543332 232211 124456899999 999999 57
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc---CCc-----EEEEEccCcccccccCEEEEEeCCeEEEecChHHHH
Q 001091 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL---SQK-----TVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLI 807 (1159)
Q Consensus 738 ~a~I~LLDDp~SALD~~t~~~if~~~i~g~l---~~k-----TvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~ 807 (1159)
+|++ ++++|+.+...+. +.+..+. +|+ |++++||+++ -+.||++++|.||+|+..|+.+++.
T Consensus 185 ~p~~------t~Gldp~~~~~l~-~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~~ 254 (347)
T 2obl_A 185 EPDV------RGGFPPSVFSSLP-KLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEEN 254 (347)
T ss_dssp CCCC------BTTBCHHHHHHHH-HHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTTT
T ss_pred CCCc------ccCCCHHHHHHHH-HHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHcC
Confidence 8877 9999999977664 4566554 367 9999999999 6779999999999999998877653
No 102
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.57 E-value=3.9e-15 Score=188.16 Aligned_cols=134 Identities=22% Similarity=0.327 Sum_probs=100.8
Q ss_pred CCCCCcHHHHHhcCCCCC--hHH-------HHHHHHHhccchHHHhccCCCCcc-ccCCCCCCCHHHHHHHHHHHHHccC
Q 001091 669 WIQTGTIRENILFGKDMR--QSF-------YEEVLEGCALNQDIEMWADGDLSV-VGERGINLSGGQKQRIQLARAVYSN 738 (1159)
Q Consensus 669 wi~~gTIreNIlfG~~~d--~~~-------y~~vl~ac~L~~dl~~lp~Gd~T~-IGe~G~~LSGGQKQRIaLARAly~~ 738 (1159)
-+.+.||.|++.|..... ++. .+++.+.. +.++.+ |.... .+..-.+|||||||||+||+|+.++
T Consensus 465 q~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl---~~L~~v--GL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~ 539 (993)
T 2ygr_A 465 EVCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL---GFLLDV--GLEYLSLSRAAATLSGGEAQRIRLATQIGSG 539 (993)
T ss_dssp CSSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH---HHHHHH--TGGGSCTTCBGGGCCHHHHHHHHHHHHHTTC
T ss_pred HHhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH---HHHhhC--CCCccccCCCcccCCHHHHHHHHHHHHHhhC
Confidence 457789999999976542 210 11111111 112222 22111 2445678999999999999999999
Q ss_pred --CCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEEEEE------eCCeEEEecChHHHHh
Q 001091 739 --SDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVM------KDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 739 --a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~Iivl------~~G~I~e~Gt~~eL~~ 808 (1159)
|++|||||||++||++..+.+++ .++.+. .|+|+|+|+|+++++..||+|++| ++|+|+..|+++++.+
T Consensus 540 ~~~~llILDEPTagLdp~~~~~L~~-~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 540 LVGVLYVLDEPSIGLHQRDNRRLIE-TLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp CCSCEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred CCCcEEEEeCcccCCCHHHHHHHHH-HHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 59999999999999999888875 455443 589999999999999999999999 6999999999999987
No 103
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.55 E-value=2.6e-16 Score=172.63 Aligned_cols=162 Identities=15% Similarity=0.192 Sum_probs=103.9
Q ss_pred CcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEE---CCEEEEEecCCCCCCCcHHHHHhcCC--
Q 001091 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV---HGKKAYVPQSSWIQTGTIRENILFGK-- 683 (1159)
Q Consensus 610 ~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v---~g~iayv~Q~pwi~~gTIreNIlfG~-- 683 (1159)
..++|+| ||++++|++++|+||+|||||||++.|.|.+ |.+ .+ ...++|++|++....-|.++|+.+..
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~-~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~ 85 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQN-EVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQ 85 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGG-GSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTC
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chh-cccccCCceEEEeCCcCccccCHhHhhhhhccC
Confidence 3568999 9999999999999999999999999999876 543 32 34689999998655679999986532
Q ss_pred -C------CChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 001091 684 -D------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTG 756 (1159)
Q Consensus 684 -~------~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~ 756 (1159)
. ++.++..+. ++.+.++.... -..|||||+||+++ ||+..+|+++|||+|+...|...
T Consensus 86 ~~~~~~~~~~~~~~~~~---------L~~l~~~~~~~----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l- 150 (245)
T 2jeo_A 86 YNFDHPDAFDNDLMHRT---------LKNIVEGKTVE----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEI- 150 (245)
T ss_dssp CCTTSGGGBCHHHHHHH---------HHHHHTTCCEE----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHH-
T ss_pred CCCCCcccccHHHHHHH---------HHHHHCCCCee----cccccccccCccCc-eEEecCCCEEEEeCccccccHHH-
Confidence 1 122222222 33333444333 35799999999988 68899999999999988877642
Q ss_pred HHHHHHHHhhhcCCcEEEEEccCc-ccccc-cCEEEEEeCCeEEEecChHHHHh
Q 001091 757 THLFKQCLMGLLSQKTVLYTTHQL-EFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 757 ~~if~~~i~g~l~~kTvIlVTH~l-~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
..+ .+.|++++||.. ...+. ++.+ ++|+ +.+++.+
T Consensus 151 --------~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 151 --------RDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp --------HTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred --------HHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 122 489999999973 33233 3333 5664 5666654
No 104
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.55 E-value=1e-15 Score=191.90 Aligned_cols=146 Identities=18% Similarity=0.176 Sum_probs=104.5
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc-CCCCcEEEE-CCEEEEEe
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-RISGAAIKV-HGKKAYVP 665 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~-~~~G~i~~v-~g~iayv~ 665 (1159)
..|+++++.. |--+ . .+.++++| +|+ |+.++|+||+|||||||+++|.|... +..|.++.- ...++|++
T Consensus 549 ~~i~i~~~rH--P~le-~--~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~ 620 (765)
T 1ewq_A 549 DRLQIRAGRH--PVVE-R--RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFD 620 (765)
T ss_dssp SSEEEEEECC--TTGG-G--TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCS
T ss_pred CcEEEEEeEC--ceEc-c--CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHH
Confidence 4688888732 2110 0 23567888 777 99999999999999999999999864 677865111 12466776
Q ss_pred cCCCCCC-CcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHH--ccCCCEE
Q 001091 666 QSSWIQT-GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV--YSNSDVY 742 (1159)
Q Consensus 666 Q~pwi~~-gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAl--y~~a~I~ 742 (1159)
| ++. -|++||+.+| +|+|++|++.+|+++ ..+|+++
T Consensus 621 ~---i~~~~~~~d~l~~g--------------------------------------~S~~~~e~~~la~il~~a~~p~Ll 659 (765)
T 1ewq_A 621 G---IYTRIGASDDLAGG--------------------------------------KSTFMVEMEEVALILKEATENSLV 659 (765)
T ss_dssp E---EEEECCC------C--------------------------------------CSHHHHHHHHHHHHHHHCCTTEEE
T ss_pred H---hhccCCHHHHHHhc--------------------------------------ccHHHHHHHHHHHHHHhccCCCEE
Confidence 6 333 4666666432 589999999999999 9999999
Q ss_pred EEeCC---CCCCCHHHH-HHHHHHHHhhhcCCcEEEEEccCccccccc
Q 001091 743 IFDDP---FSAVDAHTG-THLFKQCLMGLLSQKTVLYTTHQLEFLDAA 786 (1159)
Q Consensus 743 LLDDp---~SALD~~t~-~~if~~~i~g~l~~kTvIlVTH~l~~l~~a 786 (1159)
||||| ||++|.... ..+.+. +.. .|+|+|++||..+....+
T Consensus 660 LLDEpgrGTs~lD~~~~~~~i~~~-L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 660 LLDEVGRGTSSLDGVAIATAVAEA-LHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHH-HHH--HTCEEEEECCCHHHHTCC
T ss_pred EEECCCCCCCCcCHHHHHHHHHHH-HHh--CCCEEEEEeCCHHHHHhh
Confidence 99999 999998764 345443 433 589999999998876554
No 105
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.54 E-value=8.1e-16 Score=166.01 Aligned_cols=152 Identities=19% Similarity=0.223 Sum_probs=93.2
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhc
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCA 698 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~ 698 (1159)
-+++|++++|+||+|||||||++.|+|.+.+..|.. ..++.+-|+..+.. ++.++...+.+..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g-~~~~~~i~~~~~~~---------------~~~~~i~~~~~~~~ 84 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEG-GLNGSVIWIDTENT---------------FRPERIREIAQNRG 84 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-CCSCEEEEEESSSC---------------CCHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccC-CCCCEEEEEECCCC---------------CCHHHHHHHHHHcC
Confidence 588999999999999999999999999776644443 34555556554421 12233333444333
Q ss_pred cchH--HHhccCCCCccccCCCCCCC-HHHHHHHHHHHHHcc-------CCCEEEEeCCCCCCCHHH------H------
Q 001091 699 LNQD--IEMWADGDLSVVGERGINLS-GGQKQRIQLARAVYS-------NSDVYIFDDPFSAVDAHT------G------ 756 (1159)
Q Consensus 699 L~~d--l~~lp~Gd~T~IGe~G~~LS-GGQKQRIaLARAly~-------~a~I~LLDDp~SALD~~t------~------ 756 (1159)
+..+ .+.+. + ....+ +.|++++..++++.. +|+++++|||++.+|++. +
T Consensus 85 ~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~ 155 (231)
T 4a74_A 85 LDPDEVLKHIY------V---ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKL 155 (231)
T ss_dssp SCHHHHHHTEE------E---EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHH
T ss_pred CCHHHHhhcEE------E---EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHH
Confidence 3322 11110 0 01122 334555666666665 999999999999999842 1
Q ss_pred HHHHHHHHhhhc--CCcEEEEEccC----ccccc-ccCEEEEEeCCe
Q 001091 757 THLFKQCLMGLL--SQKTVLYTTHQ----LEFLD-AADLVLVMKDGK 796 (1159)
Q Consensus 757 ~~if~~~i~g~l--~~kTvIlVTH~----l~~l~-~aD~Iivl~~G~ 796 (1159)
+++++. +..+. .|+|+|++||. ...+. .||.++.|++|+
T Consensus 156 ~~~~~~-l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 156 AKHLAD-LHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHH-HHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHHHHH-HHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 134443 23332 38999999994 44465 489999998753
No 106
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.54 E-value=1.4e-14 Score=163.34 Aligned_cols=167 Identities=13% Similarity=0.157 Sum_probs=103.9
Q ss_pred cccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCC-cEEEECCEEEEEecCCCCCCCcHHHHHhc---CCCC
Q 001091 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG-AAIKVHGKKAYVPQSSWIQTGTIRENILF---GKDM 685 (1159)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G-~i~~v~g~iayv~Q~pwi~~gTIreNIlf---G~~~ 685 (1159)
.+.|++ ++.+++|++++|+||+|||||||++.|.|.+.+.+| .+ .|++.+. -...++..+.. +.++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v-------~~~~~e~--~~~~~~~r~~~~~~~~~~ 92 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKV-------GLAMLEE--SVEETAEDLIGLHNRVRL 92 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCE-------EEEESSS--CHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeE-------EEEeCcC--CHHHHHHHHHHHHcCCCh
Confidence 346888 899999999999999999999999999999998877 55 3443331 01112222211 1111
Q ss_pred -----------ChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHH-HHHHHHHHHHccCCCEEEEeCCCC---C
Q 001091 686 -----------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ-KQRIQLARAVYSNSDVYIFDDPFS---A 750 (1159)
Q Consensus 686 -----------d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQ-KQRIaLARAly~~a~I~LLDDp~S---A 750 (1159)
+++.+++.++.. +. ...-.+.+...++|.+| +||+. |+|+..+|+++++|||++ +
T Consensus 93 ~~~~~l~~~~~~~~~~~~~~~~~--------l~-~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~ 162 (296)
T 1cr0_A 93 RQSDSLKREIIENGKFDQWFDEL--------FG-NDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSA 162 (296)
T ss_dssp GGCHHHHHHHHHHTHHHHHHHHH--------HS-SSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----
T ss_pred hhccccccCCCCHHHHHHHHHHH--------hc-cCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCC
Confidence 112222222211 11 01111333334689999 78887 999999999999999999 4
Q ss_pred ---CCH-HHHHHHHHHHHhhhc--CCcEEEEEccCc--c--------------------cc-cccCEEEEEeCCeE
Q 001091 751 ---VDA-HTGTHLFKQCLMGLL--SQKTVLYTTHQL--E--------------------FL-DAADLVLVMKDGKI 797 (1159)
Q Consensus 751 ---LD~-~t~~~if~~~i~g~l--~~kTvIlVTH~l--~--------------------~l-~~aD~Iivl~~G~I 797 (1159)
+|. .....+.+ .++.+. .|.|+|++||.. + .+ ..||+|++|++|+.
T Consensus 163 ~~~~d~~~~~~~i~~-~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 163 SGESDERKMIDNLMT-KLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ------CHHHHHHHH-HHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHHHHHHHH-HHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 444 33334433 354443 289999999995 3 44 45999999998875
No 107
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.54 E-value=3.7e-14 Score=168.42 Aligned_cols=73 Identities=16% Similarity=0.203 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccccccCEEEEEe
Q 001091 720 NLSGGQKQRIQLARAVY----SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMK 793 (1159)
Q Consensus 720 ~LSGGQKQRIaLARAly----~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l~~aD~Iivl~ 793 (1159)
.||||||||++|||++. .+|+++|||||+++||+...+.+.+ .+..+. ++.++|++||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAA-YIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHH-HHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHH-HHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999998 6899999999999999999887765 465554 3789999999988888999999985
No 108
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.54 E-value=7e-17 Score=181.30 Aligned_cols=128 Identities=13% Similarity=0.051 Sum_probs=95.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCC----ChHHHHHHHHHh
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDM----RQSFYEEVLEGC 697 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~----d~~~y~~vl~ac 697 (1159)
++.+++|+|++|||||||.+.|.+.+++. |. . ...+.+|+|++++++.++++|+.++.+- +....-+..+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~--~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~ 105 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG--G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMK 105 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG--G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC--C-CceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHH
Confidence 67899999999999999999999998763 20 0 1235677999999999999999876321 000001112233
Q ss_pred ccchHHHhccCCCCc------cccCCCCCCCHHHHHHHHHH--HHHccCCCEEEEeCCCCCCCHHH
Q 001091 698 ALNQDIEMWADGDLS------VVGERGINLSGGQKQRIQLA--RAVYSNSDVYIFDDPFSAVDAHT 755 (1159)
Q Consensus 698 ~L~~dl~~lp~Gd~T------~IGe~G~~LSGGQKQRIaLA--RAly~~a~I~LLDDp~SALD~~t 755 (1159)
.+.++++.++.|.+| .+.+.+.++||||+||+++| |++ +|||+|+|++++++|+..
T Consensus 106 ~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 106 LLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred HHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 466788999999655 36677899999999999998 666 999999999999999864
No 109
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.51 E-value=1.6e-15 Score=174.87 Aligned_cols=160 Identities=18% Similarity=0.144 Sum_probs=104.0
Q ss_pred ccccC--CeEeeCCcEEEEEcCCCCChhHHHHHHhCCc--cCCC----CcEEEECC-------EEEEEecCCCCCCCcHH
Q 001091 612 IKLTD--KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRIS----GAAIKVHG-------KKAYVPQSSWIQTGTIR 676 (1159)
Q Consensus 612 ~~L~~--nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~--~~~~----G~i~~v~g-------~iayv~Q~pwi~~gTIr 676 (1159)
+.|.+ +..+++|++++|+||+|||||||++.+++.. +|.+ |+++.+++ +++|++|++.++..++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~ 197 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVL 197 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHG
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHh
Confidence 34444 5789999999999999999999999999998 6666 45325544 24455565555555666
Q ss_pred HHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHc-------cCCCEEEEeCCCC
Q 001091 677 ENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY-------SNSDVYIFDDPFS 749 (1159)
Q Consensus 677 eNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly-------~~a~I~LLDDp~S 749 (1159)
|||.+...++ |++|+|++.+||++. .+|+++++|||++
T Consensus 198 ~ni~~~~~~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 198 KHIYVARAFN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp GGEEEEECCS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hCEEEEecCC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 6665543322 467889999999888 6899999999999
Q ss_pred CCCHHH-------HH-HHHHHHH---hhhc--CCcEEEEEccCcccccc-cCEEEEEeCCeEEEecChHHH
Q 001091 750 AVDAHT-------GT-HLFKQCL---MGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1159)
Q Consensus 750 ALD~~t-------~~-~if~~~i---~g~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL 806 (1159)
.+|+.. .+ ..+.+++ ..+. .|.|+|+++|....... ++.+.+..+|++.+.+.+..|
T Consensus 243 ~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL 313 (349)
T 1pzn_A 243 HFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRV 313 (349)
T ss_dssp THHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEE
T ss_pred hhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEE
Confidence 999863 11 1122332 3333 38899999998764322 244667778888877765555
No 110
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.51 E-value=4.1e-16 Score=189.93 Aligned_cols=154 Identities=16% Similarity=0.115 Sum_probs=102.8
Q ss_pred cccccC-Ce-EeeCCcEEEEEcCCCCChhHHHHH--HhCCccCCCCcEEEECC------------EEEEEecCCCCCCCc
Q 001091 611 TIKLTD-KM-KIMKGSKVAVCGSVGSGKSSLLSS--ILGEIPRISGAAIKVHG------------KKAYVPQSSWIQTGT 674 (1159)
Q Consensus 611 ~~~L~~-nl-~i~~G~~vaIvG~~GSGKSTLL~~--llGe~~~~~G~i~~v~g------------~iayv~Q~pwi~~gT 674 (1159)
.+.|++ ++ .+++|+.++|+||+|||||||++. +.|..+|.+|.+ .++| +++|++|++...
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i-~v~g~~~~~~~~~~~~~~g~~~q~~~~~--- 100 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGV-FVTFEETPQDIIKNARSFGWDLAKLVDE--- 100 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEE-EEESSSCHHHHHHHHGGGTCCHHHHHHT---
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEE-EEEEeCCHHHHHHHHHHcCCChHHhhcc---
Confidence 578999 99 999999999999999999999999 679999999998 7766 245666654321
Q ss_pred HHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHc-cCCCEEEEeCCCCC---
Q 001091 675 IRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY-SNSDVYIFDDPFSA--- 750 (1159)
Q Consensus 675 IreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly-~~a~I~LLDDp~SA--- 750 (1159)
+|+.+-...++++ ....+. .+.- ..+.-.+++++- .+|++++||||++.
T Consensus 101 --~~l~~~~~~~~~~--------------------~~~~l~----~~~l-~~~~~~~~~~LS~g~~~~lilDe~t~~~~~ 153 (525)
T 1tf7_A 101 --GKLFILDASPDPE--------------------GQEVVG----GFDL-SALIERINYAIQKYRARRVSIDSVTSVFQQ 153 (525)
T ss_dssp --TSEEEEECCCCSS--------------------CCSCCS----SHHH-HHHHHHHHHHHHHHTCSEEEEECSTTTSTT
T ss_pred --CcEEEEecCcccc--------------------hhhhhc----ccCH-HHHHHHHHHHHHHcCCCEEEECCHHHHHHh
Confidence 1221111100000 000000 0111 112333444442 46889999999985
Q ss_pred --CCHHHHHHHHHHHHhhhc-CCcEEEEEccCcccc---------cc-cCEEEEEeCCe
Q 001091 751 --VDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL---------DA-ADLVLVMKDGK 796 (1159)
Q Consensus 751 --LD~~t~~~if~~~i~g~l-~~kTvIlVTH~l~~l---------~~-aD~Iivl~~G~ 796 (1159)
+|+...+.+++ .++.+. +|+|+|++||+++.+ .. ||+|++|++|+
T Consensus 154 ~~lD~~~~~~l~~-ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 154 YDASSVVRRELFR-LVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp TCCHHHHHHHHHH-HHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred cCCHHHHHHHHHH-HHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 58888776654 454443 489999999999874 34 99999999854
No 111
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.48 E-value=8.7e-15 Score=168.68 Aligned_cols=145 Identities=18% Similarity=0.203 Sum_probs=97.2
Q ss_pred eeEEEeCCcccccCCCcccccC-Ce-------EeeCCcEEEEEcCCCCChhHHHHHHhCCccCC-CCcEEEECCEEEEEe
Q 001091 595 AGEYAWDAREENFKKPTIKLTD-KM-------KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-SGAAIKVHGKKAYVP 665 (1159)
Q Consensus 595 ~~sf~w~~~~~~~~~~~~~L~~-nl-------~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~-~G~i~~v~g~iayv~ 665 (1159)
++++.+.+. ..+.|++ .+ ..++|++++|+||+|||||||+++|+|++++. +|.|+.+...
T Consensus 93 ~~~iR~~~~------~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~----- 161 (356)
T 3jvv_A 93 GAVFRTIPS------KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDP----- 161 (356)
T ss_dssp EEEEEEECC------SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESS-----
T ss_pred EEEEEECCC------CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCc-----
Confidence 455555433 2455555 54 67889999999999999999999999999987 4555222211
Q ss_pred cCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEe
Q 001091 666 QSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFD 745 (1159)
Q Consensus 666 Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLD 745 (1159)
+-+..+.. .|.. . +..+|... ++-.+ +||||+.++||++++|
T Consensus 162 -------------~e~~~~~~---------~~~v----~------q~~~~~~~--~~~~~----~La~aL~~~PdvillD 203 (356)
T 3jvv_A 162 -------------IEFVHESK---------KCLV----N------QREVHRDT--LGFSE----ALRSALREDPDIILVG 203 (356)
T ss_dssp -------------CCSCCCCS---------SSEE----E------EEEBTTTB--SCHHH----HHHHHTTSCCSEEEES
T ss_pred -------------HHhhhhcc---------ccce----e------eeeecccc--CCHHH----HHHHHhhhCcCEEecC
Confidence 11110000 0000 0 11222222 22222 9999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCC
Q 001091 746 DPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDG 795 (1159)
Q Consensus 746 Dp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G 795 (1159)
||+ |.++.+.+.+ -...|+|++.+||..+....+|++++|..|
T Consensus 204 Ep~---d~e~~~~~~~----~~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 204 EMR---DLETIRLALT----AAETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp CCC---SHHHHHHHHH----HHHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred CCC---CHHHHHHHHH----HHhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 999 7777554433 244699999999999999889999988654
No 112
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.48 E-value=4.8e-14 Score=145.87 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=68.7
Q ss_pred CCCCCHHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEE-
Q 001091 718 GINLSGGQKQRIQLARAV----YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM- 792 (1159)
Q Consensus 718 G~~LSGGQKQRIaLARAl----y~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl- 792 (1159)
..+||||||||++||||+ +++|+++|||||+++||+...+.+.+ .+..+.++.++|+|||+......||+|+.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~-~l~~~~~~~~~ivith~~~~~~~ad~i~~v~ 140 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVAD-LIKESSKESQFIVITLRDVMMANADKIIGVS 140 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH-HHHHHTTTSEEEEECSCHHHHTTCSEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHH-HHHHhccCCEEEEEEecHHHHHhCCEEEEEE
Confidence 467999999999999999 56789999999999999999887754 577777788999999999999999999855
Q ss_pred -eCCeE
Q 001091 793 -KDGKI 797 (1159)
Q Consensus 793 -~~G~I 797 (1159)
++|..
T Consensus 141 ~~~g~s 146 (173)
T 3kta_B 141 MRDGVS 146 (173)
T ss_dssp EETTEE
T ss_pred ecCCEE
Confidence 57754
No 113
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.48 E-value=1.7e-14 Score=183.39 Aligned_cols=172 Identities=12% Similarity=0.081 Sum_probs=108.6
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC-CCCcEEEECCEEEEEec
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-ISGAAIKVHGKKAYVPQ 666 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~-~~G~i~~v~g~iayv~Q 666 (1159)
..+.++++....=.. .-.....++++| +|++++|+.++|+||+||||||||+.+.+.... ..|.. +...-+.++.
T Consensus 639 ~~i~i~~~rHP~le~-~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~--vpa~~~~i~~ 715 (918)
T 3thx_B 639 RKIVIKNGRHPVIDV-LLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSY--VPAEEATIGI 715 (918)
T ss_dssp CEEEEEEECCHHHHH-HTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC--BSSSEEEEEC
T ss_pred CcEEEEeccchhhhh-hhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc--ccchhhhhhH
Confidence 357777765322000 000023678889 999999999999999999999999998643211 11110 1111111111
Q ss_pred CCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q 001091 667 SSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDD 746 (1159)
Q Consensus 667 ~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDD 746 (1159)
- ++| +...++.++ +..+-.++|+|++|+..++|+ ..+|+++||||
T Consensus 716 ~---------d~i--------------~~~ig~~d~-----------l~~~~stfs~em~~~~~il~~-a~~p~LlLLDE 760 (918)
T 3thx_B 716 V---------DGI--------------FTRMGAADN-----------IYKGRSTFMEELTDTAEIIRK-ATSQSLVILDE 760 (918)
T ss_dssp C---------SEE--------------EEEC---------------------CCHHHHHHHHHHHHHH-CCTTCEEEEES
T ss_pred H---------HHH--------------HHhCChHHH-----------HHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeC
Confidence 0 000 000011111 112235789999999999999 79999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccccCEEEE-EeCCeEE
Q 001091 747 PFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLV-MKDGKIE 798 (1159)
Q Consensus 747 p~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~aD~Iiv-l~~G~I~ 798 (1159)
|++++|+..+..+....+..+. .|+|+|++||..+....+|+.-- +.|+++.
T Consensus 761 P~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~~ 815 (918)
T 3thx_B 761 LGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMG 815 (918)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcccceEEEEEE
Confidence 9999999999888877776653 48999999999988776665421 3444443
No 114
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.46 E-value=2.6e-16 Score=183.03 Aligned_cols=133 Identities=18% Similarity=0.093 Sum_probs=89.9
Q ss_pred cC-CeEeeC--CcEEEEEcCCCCChhHHHHHHhCCccCCC----CcEEEEC----C-----------EEEEEecCCCCCC
Q 001091 615 TD-KMKIMK--GSKVAVCGSVGSGKSSLLSSILGEIPRIS----GAAIKVH----G-----------KKAYVPQSSWIQT 672 (1159)
Q Consensus 615 ~~-nl~i~~--G~~vaIvG~~GSGKSTLL~~llGe~~~~~----G~i~~v~----g-----------~iayv~Q~pwi~~ 672 (1159)
.. ++++++ |++++|+||+|||||||+++|.|.++|.+ |++ .++ | .|+|++|++.+++
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i-~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~~ 237 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGRE-FVFEKLGGDEQAMQYSDYPQMALGHQRYIDYA 237 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHH-HHHHSSSSCTTSSCTTTHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHH-HHHhhcCCCcccCChhHHHHHHHHHHHHHHHH
Confidence 45 788999 99999999999999999999999999999 887 542 2 2788888888889
Q ss_pred CcHHHHHhcCCCC-ChHHHHHHHHHhccchHHHhccCC--CCccc-c-------CCCCCCCHHHHHHHHHHHHH---cc-
Q 001091 673 GTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADG--DLSVV-G-------ERGINLSGGQKQRIQLARAV---YS- 737 (1159)
Q Consensus 673 gTIreNIlfG~~~-d~~~y~~vl~ac~L~~dl~~lp~G--d~T~I-G-------e~G~~LSGGQKQRIaLARAl---y~- 737 (1159)
+|++|||.|+..- .+...............+..++.+ .+..+ + ++|.++||||+||++++|++ ++
T Consensus 238 ~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~ 317 (365)
T 1lw7_A 238 VRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDK 317 (365)
T ss_dssp HHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHG
T ss_pred HhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHH
Confidence 9999999886532 122222222222334445554432 22222 3 67788889999999999988 77
Q ss_pred -CCCEEEEeCCC
Q 001091 738 -NSDVYIFDDPF 748 (1159)
Q Consensus 738 -~a~I~LLDDp~ 748 (1159)
+++++++|||+
T Consensus 318 ~~~~ililde~~ 329 (365)
T 1lw7_A 318 YKVPYIEIESPS 329 (365)
T ss_dssp GGCCCEEEECSS
T ss_pred cCCCEEEeCCCC
Confidence 78899999885
No 115
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.45 E-value=1.6e-13 Score=147.83 Aligned_cols=157 Identities=15% Similarity=0.148 Sum_probs=101.5
Q ss_pred cccccC-Ce-EeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHh-cCCCCCh
Q 001091 611 TIKLTD-KM-KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENIL-FGKDMRQ 687 (1159)
Q Consensus 611 ~~~L~~-nl-~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIl-fG~~~d~ 687 (1159)
.+.|++ .. .+++|+.++|+||+|||||||++.|++...+.+|.+ .|+..+.- ...+++.+. +|...
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v-------~~~~~~~~--~~~~~~~~~~~~~~~-- 77 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPC-------IYVTTEES--RDSIIRQAKQFNWDF-- 77 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCE-------EEEESSSC--HHHHHHHHHHTTCCC--
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeE-------EEEEcccC--HHHHHHHHHHhcchH--
Confidence 345655 54 689999999999999999999999999888766665 44444321 011122211 12111
Q ss_pred HHHHHHHHHhccchHHHhccCCCCccccCC---------CCCCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCC--CHH
Q 001091 688 SFYEEVLEGCALNQDIEMWADGDLSVVGER---------GINLSGGQKQRIQLARAVYSNSD--VYIFDDPFSAV--DAH 754 (1159)
Q Consensus 688 ~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~---------G~~LSGGQKQRIaLARAly~~a~--I~LLDDp~SAL--D~~ 754 (1159)
+.+...+.+.+.+- -...|++|.++...+.+.-.+|+ ++++|||++.+ |+.
T Consensus 78 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~ 141 (235)
T 2w0m_A 78 ----------------EEYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPA 141 (235)
T ss_dssp ----------------GGGBTTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGG
T ss_pred ----------------HHHhhCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHH
Confidence 11111111111100 01349999998888877778999 99999999888 987
Q ss_pred HHHHHHHHHHhhhc--CCcEEEEEccCc--------cccc-ccCEEEEEeCC
Q 001091 755 TGTHLFKQCLMGLL--SQKTVLYTTHQL--------EFLD-AADLVLVMKDG 795 (1159)
Q Consensus 755 t~~~if~~~i~g~l--~~kTvIlVTH~l--------~~l~-~aD~Iivl~~G 795 (1159)
..+.+++. +..+. .|.|+|++||.. ..+. .||+|++|++.
T Consensus 142 ~~~~~~~~-l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 142 MARKISYY-LKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GHHHHHHH-HHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHHHHHHH-HHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 76666654 44443 488999999998 3344 49999999754
No 116
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.43 E-value=1.4e-16 Score=184.57 Aligned_cols=200 Identities=14% Similarity=0.046 Sum_probs=128.8
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCCCCCCccE---------EEe
Q 001091 525 TPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QKKPITEPTSKASDVAI---------DIE 594 (1159)
Q Consensus 525 ~~Lt~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e-~~~~~~~~~~~~~~~~I---------~~~ 594 (1159)
+.+|.+.+..++..+.....| .+....+.+..+..+..|++.++ .|+ +...............+ +|+
T Consensus 63 ~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl-~p~~~~~~~~~~ir~~~~~~itl~~l~~~g~f~ 139 (361)
T 2gza_A 63 PNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR-PPACEHGTISVTIRKPSFTRRTLEDYAQQGFFK 139 (361)
T ss_dssp TTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC-TTTBCTTCCEEEEECCCCCCCCHHHHHHTTTTS
T ss_pred CCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe-cCccCCCCeEEEEEecCCCCCCHHHHHhcCCcC
Confidence 568888888877766555444 12222222223334556777777 222 11100000000011234 778
Q ss_pred eeEEE---eCCcccccCCCcccc---------cC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC--
Q 001091 595 AGEYA---WDAREENFKKPTIKL---------TD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-- 659 (1159)
Q Consensus 595 ~~sf~---w~~~~~~~~~~~~~L---------~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-- 659 (1159)
|++|+ |++. +.++| ++ ++.+++|+.++|+||+|||||||+++|+|+++|.+|.| .++|
T Consensus 140 ~v~f~~~~Y~~~------~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I-~ie~~~ 212 (361)
T 2gza_A 140 HVRPMSKSLTPF------EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLI-TIEDVP 212 (361)
T ss_dssp CCCCSCSCCCHH------HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEE-EEESSS
T ss_pred ccccccccccch------hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEE-EECCcc
Confidence 88888 7532 13444 88 99999999999999999999999999999999999998 7754
Q ss_pred ---------EEEEEe-cCCCC---CCCcHHHHHhcCCCCChHHH-HHHHHHhccchHHHhccCCCCccccCCCCCCCHHH
Q 001091 660 ---------KKAYVP-QSSWI---QTGTIRENILFGKDMRQSFY-EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1159)
Q Consensus 660 ---------~iayv~-Q~pwi---~~gTIreNIlfG~~~d~~~y-~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQ 725 (1159)
.++|++ |++.+ +..|+++||..+...++++. ...++.....+.++.+|.|.+|.+++-+.+-..++
T Consensus 213 e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~ 292 (361)
T 2gza_A 213 ELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELT 292 (361)
T ss_dssp CCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHH
T ss_pred ccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHH
Confidence 489999 88876 88999999998765433210 00011122345688899999999999999889999
Q ss_pred HHHHHHHHH
Q 001091 726 KQRIQLARA 734 (1159)
Q Consensus 726 KQRIaLARA 734 (1159)
.+|+.....
T Consensus 293 ~~Rl~~l~~ 301 (361)
T 2gza_A 293 FERLALMVL 301 (361)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999987754
No 117
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.41 E-value=2.1e-16 Score=167.79 Aligned_cols=148 Identities=18% Similarity=0.267 Sum_probs=100.5
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCcc-------------CCCCcEEEECCE-EE---------EEecCCCCCCCcHHH
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEIP-------------RISGAAIKVHGK-KA---------YVPQSSWIQTGTIRE 677 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~~-------------~~~G~i~~v~g~-ia---------yv~Q~pwi~~gTIre 677 (1159)
++|++++|+||+|||||||+++|+|+++ |..|.+ +|. .- .++|+++++++|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~---~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~ 78 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEE---DGKDYYFVTREMMQRDIAAGDFIEHAEFSG 78 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCC---BTTTBEECCHHHHHHHHHHTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCccc---CCceEEEccHHHHHHHHHcCCCEeeeeecC
Confidence 5899999999999999999999999886 566653 231 11 126788999999999
Q ss_pred HHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHH-HHccCCCEEEEeCCCCCCCHHHH
Q 001091 678 NILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR-AVYSNSDVYIFDDPFSAVDAHTG 756 (1159)
Q Consensus 678 NIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLAR-Aly~~a~I~LLDDp~SALD~~t~ 756 (1159)
|+ +|. +++..+++++.....- ++..++|.++.... |+ .|| +++.+|++.+|||+++++|.+++
T Consensus 79 n~-~g~--~~~~i~~~~~~~~~~~-~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~~~e 142 (198)
T 1lvg_A 79 NL-YGT--SKEAVRAVQAMNRICV-LDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNTETE 142 (198)
T ss_dssp EE-EEE--EHHHHHHHHHTTCEEE-EECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTCSCH
T ss_pred cc-CCC--CHHHHHHHHHcCCcEE-EECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCCCCH
Confidence 98 775 3556677776421110 11234455544321 22 567 88899999999999999999998
Q ss_pred HHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeC
Q 001091 757 THLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKD 794 (1159)
Q Consensus 757 ~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~ 794 (1159)
+.|.+. +....++ +.++| +. ..+|+|+++++
T Consensus 143 ~~i~~~-l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 143 ESLAKR-LAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp HHHHHH-HHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred HHHHHH-HHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 877543 4333332 24466 33 78999998875
No 118
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.41 E-value=4.1e-14 Score=178.51 Aligned_cols=168 Identities=11% Similarity=0.089 Sum_probs=109.2
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc-CCCCcEEEEC---CEEEE
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-RISGAAIKVH---GKKAY 663 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~-~~~G~i~~v~---g~iay 663 (1159)
..+.++++...-=.. .. ...++++| +++ ++|+.++|+||+|||||||+++|.|... ...|.. +. ..+++
T Consensus 576 ~~i~i~~~rHP~le~--~~-~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~--vpa~~~~i~~ 649 (800)
T 1wb9_A 576 PGIRITEGRHPVVEQ--VL-NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY--VPAQKVEIGP 649 (800)
T ss_dssp SCEEEEEECCTTHHH--HC-SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC--BSSSEEEECC
T ss_pred CCEEEEeccccEEEc--cC-CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc--cchhccccee
Confidence 457787764211000 00 23568888 999 9999999999999999999999998743 223421 11 12344
Q ss_pred EecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q 001091 664 VPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYI 743 (1159)
Q Consensus 664 v~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~L 743 (1159)
+.| .+..-++.||+..| -.++|+|+++ ++.+.....+|+++|
T Consensus 650 ~~~--i~~~~~~~d~l~~~-----------------------------------~stf~~e~~~-~~~il~~a~~psLlL 691 (800)
T 1wb9_A 650 IDR--IFTRVGAADDLASG-----------------------------------RSTFMVEMTE-TANILHNATEYSLVL 691 (800)
T ss_dssp CCE--EEEEEC----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEE
T ss_pred HHH--HHhhCCHHHHHHhh-----------------------------------hhhhhHHHHH-HHHHHHhccCCCEEE
Confidence 433 11112333443221 1245677764 444445688999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCcccccccCEEEEEeCCeEEEe
Q 001091 744 FDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1159)
Q Consensus 744 LDDp~SALD~~t~~~if~~~i~g~l--~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~ 800 (1159)
||||++++|+..+..+....+..+. .|+|+|++||..+....||++..++||++...
T Consensus 692 LDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 692 MDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp EESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred EECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 9999999999888777666666554 38999999999998888888877888887654
No 119
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.40 E-value=4.4e-13 Score=149.77 Aligned_cols=145 Identities=13% Similarity=0.234 Sum_probs=97.9
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEE------CCEEEEEecCCCCCCCcHHHHH-hcCCCCChHHHH
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV------HGKKAYVPQSSWIQTGTIRENI-LFGKDMRQSFYE 691 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v------~g~iayv~Q~pwi~~gTIreNI-lfG~~~d~~~y~ 691 (1159)
-+++|++++|+||+|||||||+..+++.+. .|.+ .. .+++.|++.+.-. ..+++++ .+|..++..+.+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~~~~v~~~~~e~~~--~~~~~r~~~~g~~~~~~~~~ 100 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELPTGPVIYLPAEDPP--TAIHHRLHALGAHLSAEERQ 100 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCCCCCEEEEESSSCH--HHHHHHHHHHHTTSCHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCCCccEEEEECCCCH--HHHHHHHHHHHhhcChhhhh
Confidence 378999999999999999999999998765 3432 11 3567888776422 2333333 244445555555
Q ss_pred HHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC--CCCHHHH---HHHHHHHHhh
Q 001091 692 EVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS--AVDAHTG---THLFKQCLMG 766 (1159)
Q Consensus 692 ~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~S--ALD~~t~---~~if~~~i~g 766 (1159)
++++.+.+.+ ..+.....||+||+||+ |++..+|+++++|||++ ++|.+.. ..+++ .+..
T Consensus 101 ~~~~~l~l~~-----------~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~-~L~~ 165 (279)
T 1nlf_A 101 AVADGLLIQP-----------LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIG-RMEA 165 (279)
T ss_dssp HHHHHEEECC-----------CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHH-HHHH
T ss_pred hccCceEEee-----------cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHH-HHHH
Confidence 5555554432 12345667999998875 68889999999999999 9998543 44443 3555
Q ss_pred hc--CCcEEEEEccCcccc
Q 001091 767 LL--SQKTVLYTTHQLEFL 783 (1159)
Q Consensus 767 ~l--~~kTvIlVTH~l~~l 783 (1159)
+. .|+|+|+++|.....
T Consensus 166 l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 166 IAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHCCEEEEEEEC----
T ss_pred HHHHcCCEEEEEecCCCcc
Confidence 53 389999999987654
No 120
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.39 E-value=1.1e-14 Score=154.78 Aligned_cols=153 Identities=14% Similarity=0.194 Sum_probs=86.2
Q ss_pred EEEeeeEEEeCCcccccCCCcccccCCeEeeCCcEEEEEcCCCCChhHHHHHHhCCc-----cCCCCcEEEECCE-----
Q 001091 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEI-----PRISGAAIKVHGK----- 660 (1159)
Q Consensus 591 I~~~~~sf~w~~~~~~~~~~~~~L~~nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~-----~~~~G~i~~v~g~----- 660 (1159)
++++|++|.|+. +.+++ +++++|..++|+|++|||||||++.|.|.. .|+.|.+ ...+.
T Consensus 4 l~~~~~~~~~~~---------~~l~~-~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~-~~~~~~~~~~ 72 (210)
T 1pui_A 4 LNYQQTHFVMSA---------PDIRH-LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRT-QLINLFEVAD 72 (210)
T ss_dssp -------CEEEE---------SSGGG-SSCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEEET
T ss_pred hhhhhhhheeec---------CCHhH-CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccc-eeeEEEEecC
Confidence 688999999951 34555 888999999999999999999999999998 7888875 33221
Q ss_pred -EEEEecCCCCCC--------CcHHHHHh--c----C-----------CCCChHHHHHHHHHhccchHHHhccCCCCc-c
Q 001091 661 -KAYVPQSSWIQT--------GTIRENIL--F----G-----------KDMRQSFYEEVLEGCALNQDIEMWADGDLS-V 713 (1159)
Q Consensus 661 -iayv~Q~pwi~~--------gTIreNIl--f----G-----------~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T-~ 713 (1159)
+-.+ ..|=... ...+..+- + . .+.. ...+++.+.+ + ..+... .
T Consensus 73 ~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~~------~--~~~~~~~~ 142 (210)
T 1pui_A 73 GKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWA------V--DSNIAVLV 142 (210)
T ss_dssp TEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHH------H--HTTCCEEE
T ss_pred CEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc-hhHHHHHHHH------H--HcCCCeEE
Confidence 1111 1111000 00111110 0 0 0001 0011111111 1 122222 2
Q ss_pred ccCCCCCCCHHHHHH-HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 001091 714 VGERGINLSGGQKQR-IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL 764 (1159)
Q Consensus 714 IGe~G~~LSGGQKQR-IaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i 764 (1159)
++.+--.+||||||| +..||+++.+++..++|+|+||+|....+.+++...
T Consensus 143 v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~ 194 (210)
T 1pui_A 143 LLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD 194 (210)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHH
T ss_pred EEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHH
Confidence 477777899999999 899999999999899999999999998888877543
No 121
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.38 E-value=2.5e-13 Score=153.41 Aligned_cols=136 Identities=16% Similarity=0.103 Sum_probs=91.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-------------------EEEEEecCCCCCC-CcHHHHHhc
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------------KKAYVPQSSWIQT-GTIRENILF 681 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------------------~iayv~Q~pwi~~-gTIreNIlf 681 (1159)
+|+.++|+||+|||||||++.|.|.++|.+|+| .+.| .++|++|++-++. .|++||+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V-~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKV-MFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCE-EEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEE-EEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 689999999999999999999999999999998 6643 2688999876543 478888865
Q ss_pred CCCCChHHHHHHHHHhccchHHHh--ccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 001091 682 GKDMRQSFYEEVLEGCALNQDIEM--WADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL 759 (1159)
Q Consensus 682 G~~~d~~~y~~vl~ac~L~~dl~~--lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~i 759 (1159)
+.. +.+ |... .++..+. +...++..+|||+++|||+..+|+.++| +||+.++..+
T Consensus 180 ~~~----------~~~----d~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~ 236 (304)
T 1rj9_A 180 MKA----------RGY----DLLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNG 236 (304)
T ss_dssp HHH----------HTC----SEEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHH
T ss_pred HHh----------CCC----CEEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHH
Confidence 310 001 1111 1111111 1122467789999999999999994444 4555554444
Q ss_pred HHHHHhhhc--CCcEEEEEccCccc
Q 001091 760 FKQCLMGLL--SQKTVLYTTHQLEF 782 (1159)
Q Consensus 760 f~~~i~g~l--~~kTvIlVTH~l~~ 782 (1159)
.+.. ..+. .+.|+|++||..+.
T Consensus 237 ~~~~-~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 237 LEQA-KKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHH-HHHHHHHCCSEEEEECTTSS
T ss_pred HHHH-HHHHHHcCCcEEEEECCccc
Confidence 4332 2221 37899999997543
No 122
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.37 E-value=4.4e-14 Score=165.83 Aligned_cols=155 Identities=14% Similarity=0.135 Sum_probs=95.6
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCC--cEEEE-------C
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG--AAIKV-------H 658 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G--~i~~v-------~ 658 (1159)
..|+++|+++.|+. .+++++ +|+| +|+|++|+|||||+++|.|...+..| .+ .+ .
T Consensus 10 ~~l~~~~l~~~y~~--------~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~-~~~~~~t~~~ 74 (418)
T 2qag_C 10 GYVGFANLPNQVYR--------KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGP-SHRIKKTVQV 74 (418)
T ss_dssp -----CCCCCCTTT--------TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSC-C-----CCEE
T ss_pred CcEEEEecceeECC--------EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCc-ccCCccceee
Confidence 35889999999853 467888 9987 99999999999999999999875443 11 11 1
Q ss_pred CEEEEEecCCCCC-CCcHHHHHhcCCCCCh-HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 001091 659 GKKAYVPQSSWIQ-TGTIRENILFGKDMRQ-SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1159)
Q Consensus 659 g~iayv~Q~pwi~-~gTIreNIlfG~~~d~-~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly 736 (1159)
..++|++|++-++ +.||.||+.+|...+. +.++.+.+ .++ ..++++++||++||||++
T Consensus 75 ~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~------~i~--------------~~~~~~l~qr~~IaRal~ 134 (418)
T 2qag_C 75 EQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVID------YID--------------SKFEDYLNAESRVNRRQM 134 (418)
T ss_dssp EEEECC------CEEEEEEECC-----------CHHHHH------HHH--------------HHHHHHTTTSCC-CCCCC
T ss_pred eeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHH------HHH--------------HHHHHHHHHHHHHHHHhc
Confidence 2478999987765 6799999999875432 22222221 111 134567788999999999
Q ss_pred cCCC---EEEEeCCC-CCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccc
Q 001091 737 SNSD---VYIFDDPF-SAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL 783 (1159)
Q Consensus 737 ~~a~---I~LLDDp~-SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l 783 (1159)
++|+ ++++|||| +++|+... .+++ .+..+.++|+|.|..+.+
T Consensus 135 ~d~~~~vlL~ldePt~~~L~~~d~-~~lk----~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 135 PDNRVQCCLYFIAPSGHGLKPLDI-EFMK----RLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp CCC-CCEEEEECCC-CCSCCHHHH-HHHH----HHTTTSEEEEEEESTTSS
T ss_pred cCCCeeEEEEEecCcccCCCHHHH-HHHH----HHhccCcEEEEEEcccCc
Confidence 9999 99999999 69998763 3333 334578999999977654
No 123
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.37 E-value=1.3e-14 Score=179.00 Aligned_cols=176 Identities=15% Similarity=0.223 Sum_probs=105.6
Q ss_pred cEEEeeeEEEeCCcccccCCCccccc----------C-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC-CCCcEEEE
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLT----------D-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-ISGAAIKV 657 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~----------~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~-~~G~i~~v 657 (1159)
.++++|+++.|+.. ..+.++ + ++++|. ++|+||+|||||||+++|.|...| .+|.| .+
T Consensus 10 ~i~~~~l~~~~~~~------~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~v-t~ 79 (608)
T 3szr_A 10 SVAENNLCSQYEEK------VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIV-TR 79 (608)
T ss_dssp ----------CHHH------HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------C-CC
T ss_pred hhhhhhhhHHHHHH------HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeE-EE
Confidence 57889999999643 112111 1 467775 999999999999999999999978 79987 55
Q ss_pred CC----------------EEEEEecCCCCCC-CcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCC
Q 001091 658 HG----------------KKAYVPQSSWIQT-GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1159)
Q Consensus 658 ~g----------------~iayv~Q~pwi~~-gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~ 720 (1159)
+| .++|++|++.+++ .||+|||.+... .. |..+..
T Consensus 80 ~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~-----------~~-----------------~~~~~~ 131 (608)
T 3szr_A 80 CPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQN-----------AI-----------------AGEGMG 131 (608)
T ss_dssp SCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHH-----------HH-----------------HCSSSC
T ss_pred cCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHH-----------Hh-----------------cCCccc
Confidence 44 4789999987754 599999965210 00 000111
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCC------CCCCCHHHHHHHHHHHHhhhcC---CcEEEEEccCcccc--------
Q 001091 721 LSGGQKQRIQLARAVYSNSDVYIFDDP------FSAVDAHTGTHLFKQCLMGLLS---QKTVLYTTHQLEFL-------- 783 (1159)
Q Consensus 721 LSGGQKQRIaLARAly~~a~I~LLDDp------~SALD~~t~~~if~~~i~g~l~---~kTvIlVTH~l~~l-------- 783 (1159)
+| ++++.++++...+|+++++||| |+++|+...+.+. +.+..+++ +-+++++||+++..
T Consensus 132 ~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~-~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la 207 (608)
T 3szr_A 132 IS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIK-TLIKKYIQRQETISLVVVPSNVDIATTEALSMA 207 (608)
T ss_dssp CC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHH-HHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHH
T ss_pred cc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHH-HHHHHHHhcCCCCceEEEeccchhccHHHHHHH
Confidence 11 2344444555568999999999 9999999977664 45666543 45778889998642
Q ss_pred cc-----cCEEEEEeCCeEEEecChHHHH
Q 001091 784 DA-----ADLVLVMKDGKIEQSGKYEDLI 807 (1159)
Q Consensus 784 ~~-----aD~Iivl~~G~I~e~Gt~~eL~ 807 (1159)
.. ...|+|+.++..++.|+.+++.
T Consensus 208 ~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 208 QEVDPEGDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp HHHCSSCCSEEEEEECGGGSSSSSTTCCC
T ss_pred HHHhhcCCceEEEecchhhcCcccHHHHH
Confidence 11 3568999999988888865543
No 124
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.35 E-value=2.1e-12 Score=141.05 Aligned_cols=159 Identities=16% Similarity=0.078 Sum_probs=83.3
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHh--CCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHH-hcCCCCChHHHHHHHH
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSIL--GEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI-LFGKDMRQSFYEEVLE 695 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~ll--Ge~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNI-lfG~~~d~~~y~~vl~ 695 (1159)
.+++|++++|+||+|||||||+++|+ |..++.+|.+ .+.+. ++. ..+++.. .+| ++.+.+ ..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~-~~~~~------~~~---~~~~~~~~~~g--~~~~~~---~~ 90 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGV-FVTLE------ERA---RDLRREMASFG--WDFEKY---EK 90 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEE-EEESS------SCH---HHHHHHHHTTT--CCHHHH---HH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEE-EEEcc------CCH---HHHHHHHHHcC--CChHHH---hh
Confidence 58999999999999999999999999 5545555544 33321 110 0111111 011 111110 00
Q ss_pred HhccchHHHhccC--CCCc-cccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCC-----HHHHHHHHHHHHhhh
Q 001091 696 GCALNQDIEMWAD--GDLS-VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD-----AHTGTHLFKQCLMGL 767 (1159)
Q Consensus 696 ac~L~~dl~~lp~--Gd~T-~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD-----~~t~~~if~~~i~g~ 767 (1159)
.-.+ ...+..+. +... ..-..-...+-++.++...+..-..+|++++||||++.+| +.. ++.+.+.+..+
T Consensus 91 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~-~~~l~~l~~~l 168 (251)
T 2ehv_A 91 EGKI-AIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKI-REVLLKLNTIL 168 (251)
T ss_dssp TTSE-EEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGH-HHHHHHHHHHH
T ss_pred cCCE-EEEEccccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHH-HHHHHHHHHHH
Confidence 0000 00000000 0000 0000000122344444444444457999999999999997 444 44445555544
Q ss_pred c-CCcEEEEEccCcccc----------ccc-CEEEEEeC
Q 001091 768 L-SQKTVLYTTHQLEFL----------DAA-DLVLVMKD 794 (1159)
Q Consensus 768 l-~~kTvIlVTH~l~~l----------~~a-D~Iivl~~ 794 (1159)
. +|+|+|++||.++.. ..| |+|++|++
T Consensus 169 ~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 169 LEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 3 489999999998875 457 99999963
No 125
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.34 E-value=4.2e-15 Score=158.81 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=88.8
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhc----CCCCChHHHHHHHH
Q 001091 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILF----GKDMRQSFYEEVLE 695 (1159)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlf----G~~~d~~~y~~vl~ 695 (1159)
.++|++++|+||+|||||||+++|.|.+++. |. .+++++|+...++.+.++|+.. +.+. +.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g~------~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~-------~~~ 84 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-GL------PAEVVPMDGFHLDNRLLEPRGLLPRKGAPE-------TFD 84 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-TC------CEEEEESGGGBCCHHHHGGGTCGGGTTSGG-------GBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CC------ceEEEecCCCcCCHHHHHHhcccccCCCCc-------hhh
Confidence 4689999999999999999999999999876 52 3689999999998888888641 1111 111
Q ss_pred HhccchHHHhccCC--CCccccCCCCCCCHHHHHHHHHH-HHHccCCCEEEEeCCC
Q 001091 696 GCALNQDIEMWADG--DLSVVGERGINLSGGQKQRIQLA-RAVYSNSDVYIFDDPF 748 (1159)
Q Consensus 696 ac~L~~dl~~lp~G--d~T~IGe~G~~LSGGQKQRIaLA-RAly~~a~I~LLDDp~ 748 (1159)
...+.+.+..++.| ..+.++++|.++||||+||+++| |+++.++.++++|||.
T Consensus 85 ~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 85 FEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp HHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred HHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 12233455666666 45567899999999999999998 8888888888888874
No 126
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.33 E-value=5.5e-14 Score=158.91 Aligned_cols=141 Identities=13% Similarity=0.159 Sum_probs=79.9
Q ss_pred cccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCC-ccCCCCcEEEEC----------CEEEEEecCCCC-CCCcHHH
Q 001091 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE-IPRISGAAIKVH----------GKKAYVPQSSWI-QTGTIRE 677 (1159)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe-~~~~~G~i~~v~----------g~iayv~Q~pwi-~~gTIre 677 (1159)
..++++ +++| +|+|++|+|||||++.|.|. ..|.+| + .++ ..++|++|++-. .+-||.|
T Consensus 11 ~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i-~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~D 82 (301)
T 2qnr_A 11 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-I-SGAAEKIERTVQIEASTVEIEERGVKLRLTVVD 82 (301)
T ss_dssp -------CEEE------EEEEETTSSHHHHHHHHHC--------------------------CEEEEC---CCEEEEEEE
T ss_pred EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-c-ccCCcccCCcceEeeEEEEecCCCcccCcchhh
Confidence 457888 8887 99999999999999999997 888888 4 322 246899997654 4569999
Q ss_pred HHhcCCCCCh-HHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC-CCHHH
Q 001091 678 NILFGKDMRQ-SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSA-VDAHT 755 (1159)
Q Consensus 678 NIlfG~~~d~-~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SA-LD~~t 755 (1159)
|.-+|...+. ++++.+++. +.+..+ ..-.++|||||||+++|||+. ++++|||+++ ||+..
T Consensus 83 t~g~~~~~~~~e~~~~l~~~--l~~~~~-----------~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~ 145 (301)
T 2qnr_A 83 TPGYGDAINCRDCFKTIISY--IDEQFE-----------RYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLD 145 (301)
T ss_dssp EC-----------CTTHHHH--HHHHHH-----------HHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHH
T ss_pred hhhhhhhcCcHHHHHHHHHH--HHHHHH-----------HHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHH
Confidence 9988754321 333333332 111111 122468999999999999985 9999999985 99976
Q ss_pred HHHHHHHHHhhhcC--CcEEEEEccCcc
Q 001091 756 GTHLFKQCLMGLLS--QKTVLYTTHQLE 781 (1159)
Q Consensus 756 ~~~if~~~i~g~l~--~kTvIlVTH~l~ 781 (1159)
. .+ ++.+.+ +.++|+.+|++.
T Consensus 146 ~-~~----l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 146 V-AF----MKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp H-HH----HHHHTTTSCEEEEECCGGGS
T ss_pred H-HH----HHHHHhcCCEEEEEEeCCCC
Confidence 3 33 333322 567777788763
No 127
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.31 E-value=1.1e-12 Score=159.36 Aligned_cols=76 Identities=20% Similarity=0.259 Sum_probs=67.8
Q ss_pred CCC-CHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEEEeCC
Q 001091 719 INL-SGGQKQRIQLARAVYSNS--DVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDG 795 (1159)
Q Consensus 719 ~~L-SGGQKQRIaLARAly~~a--~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G 795 (1159)
.+| ||||||||+||||+..+| +++||||||++||+.+...+.+ .+..+.+++|||+|||+++.+..||++++|++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~-~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAE-QLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHH-HHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 466 999999999999999999 9999999999999999887765 455555689999999999998889999999654
No 128
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.27 E-value=2.1e-13 Score=146.78 Aligned_cols=135 Identities=15% Similarity=0.147 Sum_probs=89.8
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC--CCCcEEEECC---------EEEEEecCCCCCCC-cH----HHHHh
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHG---------KKAYVPQSSWIQTG-TI----RENIL 680 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~--~~G~i~~v~g---------~iayv~Q~pwi~~g-TI----reNIl 680 (1159)
.-..++|++++|+||||||||||+++|+|.++| ..|+| .+.+ .++|++|++-.|.. |+ .||+.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v-~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSV-SHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECC-CEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEE-EecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 445789999999999999999999999999985 67877 5543 25677777655433 22 34433
Q ss_pred cCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH
Q 001091 681 FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760 (1159)
Q Consensus 681 fG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if 760 (1159)
+... +.|-.+++ ++.+..+++++||| ||+...+.+.
T Consensus 89 ~~~~------------------------------------~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~ 124 (219)
T 1s96_A 89 VFGN------------------------------------YYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIR 124 (219)
T ss_dssp ETTE------------------------------------EEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHH
T ss_pred HHhc------------------------------------cCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHH
Confidence 2111 11111222 33444557999999 9999988775
Q ss_pred HHHHhhhcCCcEEEEEccCcccccccCEEEEEeCCeEEEecChHHHHh
Q 001091 761 KQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1159)
Q Consensus 761 ~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~ 808 (1159)
+. +. +++|++++||+++.+.. ++ +++| .|+.+++.+
T Consensus 125 ~~-l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 125 QK-MP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HH-CT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HH-cc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 43 22 68999999999998765 32 6677 577777765
No 129
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.27 E-value=1.3e-11 Score=131.85 Aligned_cols=141 Identities=16% Similarity=0.110 Sum_probs=91.9
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhc
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCA 698 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~ 698 (1159)
-+++|++++|+||+|||||||++.+++ + ..+ .+.|++.+.-+ +.++..+..+..+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~~~-------~v~~i~~~~~~---------------~~~~~~~~~~~~~ 70 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL--L-SGK-------KVAYVDTEGGF---------------SPERLVQMAETRG 70 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH--H-HCS-------EEEEEESSCCC---------------CHHHHHHHHHTTT
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH--H-cCC-------cEEEEECCCCC---------------CHHHHHHHHHhcC
Confidence 488999999999999999999999999 2 222 34566655421 2233333333332
Q ss_pred cch--HHHhccCCCCccccCCCCCCCHH--HHHHHHHHHHHccC-CCEEEEeCCCCCCCHHHH--------HHHHHHHHh
Q 001091 699 LNQ--DIEMWADGDLSVVGERGINLSGG--QKQRIQLARAVYSN-SDVYIFDDPFSAVDAHTG--------THLFKQCLM 765 (1159)
Q Consensus 699 L~~--dl~~lp~Gd~T~IGe~G~~LSGG--QKQRIaLARAly~~-a~I~LLDDp~SALD~~t~--------~~if~~~i~ 765 (1159)
+.. ..+.+. + ..+|++ |+|+++.||++.++ |+++++|||++.+|+... .++++ .+.
T Consensus 71 ~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~-~L~ 139 (220)
T 2cvh_A 71 LNPEEALSRFI------L----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQ-VLL 139 (220)
T ss_dssp CCHHHHHHHEE------E----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHH-HHH
T ss_pred CChHHHhhcEE------E----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHH-HHH
Confidence 211 111111 1 123344 47899999999986 999999999999997432 12222 234
Q ss_pred hhcC--CcEEEEEccCccc-------------c-cccCEEEEEeCC
Q 001091 766 GLLS--QKTVLYTTHQLEF-------------L-DAADLVLVMKDG 795 (1159)
Q Consensus 766 g~l~--~kTvIlVTH~l~~-------------l-~~aD~Iivl~~G 795 (1159)
.+.+ +.|+|+++|.... + ..||.|++|++.
T Consensus 140 ~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 140 WIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 4433 7899999997652 2 459999999754
No 130
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.26 E-value=1.5e-12 Score=152.25 Aligned_cols=172 Identities=15% Similarity=0.203 Sum_probs=107.0
Q ss_pred cEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcE--EEEEcCCCCChhHHHHHHhCCccCCCCcEE-------EECC
Q 001091 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSK--VAVCGSVGSGKSSLLSSILGEIPRISGAAI-------KVHG 659 (1159)
Q Consensus 590 ~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~--vaIvG~~GSGKSTLL~~llGe~~~~~G~i~-------~v~g 659 (1159)
.+++++ ++.|++ .+ +++ |+++++|+. ++|+||+|||||||+++|+|.. ..|... .. .
T Consensus 16 ~l~~~~-~~~y~~--------~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--l~g~~~~~~~~~~~~-~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS--------LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--FEGEPATHTQPGVQL-Q 82 (427)
T ss_dssp -CCCCC-CC-CC----------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--C-------CCSSCEE-E
T ss_pred eEEEee-EEEECC--------ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--ccCCcCCCCCccceE-e
Confidence 355555 667753 34 889 999999999 9999999999999999999984 122110 11 2
Q ss_pred EEEEEecCCCCC-CCcHHHHHhcCCCCChH-HHHHHHHHh--ccchHHHh-------ccCCCCc-------cccCCCCCC
Q 001091 660 KKAYVPQSSWIQ-TGTIRENILFGKDMRQS-FYEEVLEGC--ALNQDIEM-------WADGDLS-------VVGERGINL 721 (1159)
Q Consensus 660 ~iayv~Q~pwi~-~gTIreNIlfG~~~d~~-~y~~vl~ac--~L~~dl~~-------lp~Gd~T-------~IGe~G~~L 721 (1159)
.++|++|++-++ +.|+.||+.||...+.+ .+..+.+.. ...+-++. ++...++ .|-+.|..|
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l 162 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSL 162 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---
T ss_pred eEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCC
Confidence 689999998776 67999999999876532 222221111 01111111 1111112 123445567
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhh-hc-CCcEEEEEcc
Q 001091 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG-LL-SQKTVLYTTH 778 (1159)
Q Consensus 722 SGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g-~l-~~kTvIlVTH 778 (1159)
+-.+ +.++|+|..+++|+++|+|+..|.+.-...+++. ++. +. .|.+++.++.
T Consensus 163 ~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~-I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 163 KSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIK-ITSELVSNGVQIYQFPT 217 (427)
T ss_dssp CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHH-HHHHHBTTBCCCCCCC-
T ss_pred CHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHH-HHHHHHHcCCcEEecCC
Confidence 7666 8999999999999999999999988765655554 443 43 4678888774
No 131
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.23 E-value=4.5e-13 Score=140.43 Aligned_cols=119 Identities=16% Similarity=0.153 Sum_probs=78.7
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE-----------EEEEecCCCCCCCcHHHHHhcCCCCCh
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-----------KAYVPQSSWIQTGTIRENILFGKDMRQ 687 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~-----------iayv~Q~pwi~~gTIreNIlfG~~~d~ 687 (1159)
.+++|++++|+||+|||||||++.|.|. +..|.| .++|. ++|++|++. .+.|++||+.+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i-~i~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~l~~~~~--- 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKV-HFHSDDLWGYIKHGRIDPWLPQSHQ-QNRMIMQIAADVAG--- 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEE-EECTTHHHHTCCSSCCCTTSSSHHH-HHHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeE-EEcccchhhhhhcccccCCccchhh-hhHHHHHHHHHHHH---
Confidence 4789999999999999999999999998 567887 77652 356666544 45678888765210
Q ss_pred HHHHHHHHH---hccch-----HHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 001091 688 SFYEEVLEG---CALNQ-----DIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL 759 (1159)
Q Consensus 688 ~~y~~vl~a---c~L~~-----dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~i 759 (1159)
.+ ... .-++. .++.+.. .+.+...+|+||+||+++||++.++|+++ +|+...+.+
T Consensus 78 -~~---~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~ 140 (191)
T 1zp6_A 78 -RY---AKEGYFVILDGVVRPDWLPAFTA-----LARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADL 140 (191)
T ss_dssp -HH---HHTSCEEEECSCCCTTTTHHHHT-----TCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHH
T ss_pred -HH---hccCCeEEEeccCcHHHHHHHHh-----cCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHH
Confidence 00 000 00000 1111111 13344679999999999999999999875 477665554
Q ss_pred HH
Q 001091 760 FK 761 (1159)
Q Consensus 760 f~ 761 (1159)
.+
T Consensus 141 ~~ 142 (191)
T 1zp6_A 141 HS 142 (191)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 132
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.21 E-value=3.1e-11 Score=140.42 Aligned_cols=77 Identities=30% Similarity=0.471 Sum_probs=66.1
Q ss_pred CCCCHHHHHHH------HHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEEE
Q 001091 719 INLSGGQKQRI------QLARAVYSN-SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLV 791 (1159)
Q Consensus 719 ~~LSGGQKQRI------aLARAly~~-a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Iiv 791 (1159)
.+||||||||+ ++|||+..+ |+++|||||+++||++..+.+.+ .+..+.+++|+|++||+.+....||++++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~~~~~vi~~th~~~~~~~~d~~~~ 357 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAE-IFRKVKSIPQMIIITHHRELEDVADVIIN 357 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHH-HHHHCCSCSEEEEEESCGGGGGGCSEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHH-HHHHhccCCeEEEEEChHHHHhhCCEEEE
Confidence 58999999988 668999999 99999999999999999887765 46555456799999999987778999999
Q ss_pred Ee-CCe
Q 001091 792 MK-DGK 796 (1159)
Q Consensus 792 l~-~G~ 796 (1159)
|+ +|.
T Consensus 358 l~k~~~ 363 (371)
T 3auy_A 358 VKKDGN 363 (371)
T ss_dssp EEESSS
T ss_pred EEecCC
Confidence 96 443
No 133
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.12 E-value=3.2e-13 Score=153.83 Aligned_cols=142 Identities=18% Similarity=0.134 Sum_probs=91.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCCc--------cCCCCcEEEECCE----------------------------EEEE--
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGEI--------PRISGAAIKVHGK----------------------------KAYV-- 664 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe~--------~~~~G~i~~v~g~----------------------------iayv-- 664 (1159)
=++++|+|++|||||||++.|+|.. .+..|+| .++|. ++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i-~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~ 82 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEV-SVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSC-CEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCccc-CccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHh
Confidence 3589999999999999999999997 7788988 66542 3455
Q ss_pred -ecCCC-CCCCcHHHHHhcCCCCCh-HHH---HHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 001091 665 -PQSSW-IQTGTIRENILFGKDMRQ-SFY---EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738 (1159)
Q Consensus 665 -~Q~pw-i~~gTIreNIlfG~~~d~-~~y---~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~ 738 (1159)
+|++- .++.++.||+.++.|..- ..+ .+.-+...++.-+.... .. ..-++-.+||||||||+..+|++..+
T Consensus 83 ~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd-~~--~~~~~~~~ls~g~~Q~~~ad~ill~k 159 (318)
T 1nij_A 83 NLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVD-AV--HADEQMNQFTIAQSQVGYADRILLTK 159 (318)
T ss_dssp HHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEE-TT--THHHHHHHCHHHHHHHHTCSEEEEEC
T ss_pred HHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEE-HH--HHHHHHhhchHHHHHHHhCCEEEEEC
Confidence 57654 468899999988754210 111 11111122221111100 00 00001126899999999988999899
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCc
Q 001091 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780 (1159)
Q Consensus 739 a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l 780 (1159)
+|++ ||| +.+ .+.++.+..+.|++++||..
T Consensus 160 ~dl~--de~---------~~l-~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 160 TDVA--GEA---------EKL-HERLARINARAPVYTVTHGD 189 (318)
T ss_dssp TTTC--SCT---------HHH-HHHHHHHCSSSCEEECCSSC
T ss_pred cccC--CHH---------HHH-HHHHHHhCCCCeEEEecccC
Confidence 9877 888 223 23445555789999999973
No 134
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.10 E-value=5.8e-11 Score=128.97 Aligned_cols=150 Identities=19% Similarity=0.253 Sum_probs=81.0
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhCC--ccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHH
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSILGE--IPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEG 696 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~llGe--~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~a 696 (1159)
-+++|++++|+||+|||||||++.|++. .++..|.. .+.+.|+.-+.- ++.++..+..+.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~---~~~~~~i~~~~~---------------~~~~~~~~~~~~ 81 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGG---EGKAMYIDTEGT---------------FRPERLLAVAER 81 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCC---SSEEEEEESSSC---------------CCHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCC---CCeEEEEECCCC---------------cCHHHHHHHHHH
Confidence 4889999999999999999999999994 54422211 123345543321 122222333333
Q ss_pred hccchH--HHhccCCCCccccCCCCCCCHHHHH-HHHHHHHHc--cCCCEEEEeCCCCCCCHH-------HHHH-HHHHH
Q 001091 697 CALNQD--IEMWADGDLSVVGERGINLSGGQKQ-RIQLARAVY--SNSDVYIFDDPFSAVDAH-------TGTH-LFKQC 763 (1159)
Q Consensus 697 c~L~~d--l~~lp~Gd~T~IGe~G~~LSGGQKQ-RIaLARAly--~~a~I~LLDDp~SALD~~-------t~~~-if~~~ 763 (1159)
.+...+ ++.+. +. ...++.+.. .+.-++++. .+|+++++|||++.+|+. .+++ ...+.
T Consensus 82 ~g~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~ 152 (243)
T 1n0w_A 82 YGLSGSDVLDNVA------YA---RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARF 152 (243)
T ss_dssp TTCCHHHHHHTEE------EE---ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHH
T ss_pred cCCCHHHHhhCeE------EE---ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHH
Confidence 222210 11110 00 123444433 333344443 589999999999999985 3211 12222
Q ss_pred H---hhhc--CCcEEEEEccCcccc-------------------c-ccCEEEEEeCC
Q 001091 764 L---MGLL--SQKTVLYTTHQLEFL-------------------D-AADLVLVMKDG 795 (1159)
Q Consensus 764 i---~g~l--~~kTvIlVTH~l~~l-------------------~-~aD~Iivl~~G 795 (1159)
+ ..+. .|+|+|+++|..... . .||.|++|+.|
T Consensus 153 ~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 153 LRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 2 2222 389999999965432 1 58999999865
No 135
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.06 E-value=1.1e-13 Score=145.21 Aligned_cols=154 Identities=12% Similarity=0.042 Sum_probs=94.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-------EEEEEecCCCC-CCCcHHHHHhcCCCCChHHHHHHH
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------KKAYVPQSSWI-QTGTIRENILFGKDMRQSFYEEVL 694 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------~iayv~Q~pwi-~~gTIreNIlfG~~~d~~~y~~vl 694 (1159)
|++++|+||+|||||||++.|.+ +.+|.+ .++| ..++++|.+.. .+.|+++|+.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~-~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------- 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSA-YIEGDIINHMVVGGYRPPWESDELLALTWKNITDLT----------- 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEE-EEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHH-----------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeE-EEcccchhhhhccccccCccchhHHHHHHHHHHHHH-----------
Confidence 78999999999999999999987 567877 6654 23455543311 2235555553210
Q ss_pred HHhccchHHHhccCCCCccc----cC----CCCCC--CHHHHHHHHHHH------HHccCCCEEEEeCCCCCCCHHHHHH
Q 001091 695 EGCALNQDIEMWADGDLSVV----GE----RGINL--SGGQKQRIQLAR------AVYSNSDVYIFDDPFSAVDAHTGTH 758 (1159)
Q Consensus 695 ~ac~L~~dl~~lp~Gd~T~I----Ge----~G~~L--SGGQKQRIaLAR------Aly~~a~I~LLDDp~SALD~~t~~~ 758 (1159)
+.. ...|....+ +. +-..+ |+||+||+.++. +++++++...+| .++|+...+.
T Consensus 67 ~~~--------~~~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d---~~ld~~~~~~ 135 (189)
T 2bdt_A 67 VNF--------LLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKD---EQMGERCLEL 135 (189)
T ss_dssp HHH--------HHTTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH
T ss_pred HHH--------HhcCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcccc---ccCCHHHHHH
Confidence 000 001111111 11 00134 888888888887 888888877777 3789877665
Q ss_pred HHHHHHhhhc-CCcEEEEEccC-cccccc-cCEEEEEeCCeEEEecChHHH
Q 001091 759 LFKQCLMGLL-SQKTVLYTTHQ-LEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1159)
Q Consensus 759 if~~~i~g~l-~~kTvIlVTH~-l~~l~~-aD~Iivl~~G~I~e~Gt~~eL 806 (1159)
++. +..+. .+.|+|.+||. ++.+.. ||+|+ ++|+++..|+.+-|
T Consensus 136 -~~~-~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 136 -VEE-FESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp -HHH-HHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred -HHH-HhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 443 44332 46899999998 888755 99998 99999999987655
No 136
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.05 E-value=2.6e-11 Score=139.07 Aligned_cols=104 Identities=18% Similarity=0.197 Sum_probs=70.8
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCcc-CCCCcEEEEC-C---------EEEEEecCCCCCCC-cHHHHHhcCCCCChH
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEIP-RISGAAIKVH-G---------KKAYVPQSSWIQTG-TIRENILFGKDMRQS 688 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~~-~~~G~i~~v~-g---------~iayv~Q~pwi~~g-TIreNIlfG~~~d~~ 688 (1159)
.+|+.++|+||+|+|||||+++|+|+.+ +..|+| ... | .++|++|+++++.. |++|+-+.+ .+++
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I-~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~l~~--l~~~ 289 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDV-SNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLWH--LEPE 289 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC--------------CCCEEEECTTSCEEEECHHHHTCCCCC--CCHH
T ss_pred cCCCEEEEECCCCccHHHHHHHHhccccccccCCc-cccCCCCccceEEEEEEEECCCCEecCcccHHHhhhcC--CCHH
Confidence 4799999999999999999999999999 999998 654 3 58999999988755 899975443 2322
Q ss_pred HHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 001091 689 FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1159)
Q Consensus 689 ~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAl 735 (1159)
...+ . ..+.++.+ |....-+..-.+|| ||+||++||+++
T Consensus 290 e~~~----~-~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 290 QITQ----G-FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp HHHH----T-SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred HHHH----H-HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 2111 1 11112221 22223345567899 999999999986
No 137
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.94 E-value=1.4e-09 Score=112.86 Aligned_cols=111 Identities=19% Similarity=0.178 Sum_probs=73.9
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHH
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEG 696 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~a 696 (1159)
++.+++|+.++++||+|+|||||+++|.+++.+.+|.. +.|+ +..+.+ ++...
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------~~~~---------~~~~~~-----------~~~~~- 84 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------GYFF---------DTKDLI-----------FRLKH- 84 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------CCEE---------EHHHHH-----------HHHHH-
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------EEEE---------EHHHHH-----------HHHHH-
Confidence 67888999999999999999999999999998777743 1221 111111 11100
Q ss_pred hccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHHhhhc-CCcEEE
Q 001091 697 CALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS-AVDAHTGTHLFKQCLMGLL-SQKTVL 774 (1159)
Q Consensus 697 c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~S-ALD~~t~~~if~~~i~g~l-~~kTvI 774 (1159)
.+..+.. . -+...+.+|++++||||.+ ++|+...+. +.+.++... +++++|
T Consensus 85 --------~~~~~~~--------~----------~~~~~~~~~~llilDE~~~~~~~~~~~~~-l~~ll~~~~~~~~~ii 137 (180)
T 3ec2_A 85 --------LMDEGKD--------T----------KFLKTVLNSPVLVLDDLGSERLSDWQREL-ISYIITYRYNNLKSTI 137 (180)
T ss_dssp --------HHHHTCC--------S----------HHHHHHHTCSEEEEETCSSSCCCHHHHHH-HHHHHHHHHHTTCEEE
T ss_pred --------HhcCchH--------H----------HHHHHhcCCCEEEEeCCCCCcCCHHHHHH-HHHHHHHHHHcCCCEE
Confidence 0111110 0 1223355999999999996 899887654 445565544 689999
Q ss_pred EEccCcc
Q 001091 775 YTTHQLE 781 (1159)
Q Consensus 775 lVTH~l~ 781 (1159)
++||...
T Consensus 138 ~tsn~~~ 144 (180)
T 3ec2_A 138 ITTNYSL 144 (180)
T ss_dssp EECCCCS
T ss_pred EEcCCCh
Confidence 9999763
No 138
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.90 E-value=2.1e-09 Score=108.53 Aligned_cols=88 Identities=23% Similarity=0.288 Sum_probs=63.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccch
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQ 701 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~ 701 (1159)
+|+.++|+||+|||||||+++|.|++.+ +|. ++.|++.......
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~------~~~~~~~~~~~~~----------------------------- 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGK------NAAYIDAASMPLT----------------------------- 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTC------CEEEEETTTSCCC-----------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCC------cEEEEcHHHhhHH-----------------------------
Confidence 8999999999999999999999999987 462 2345555443221
Q ss_pred HHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcE-EEEEccC
Q 001091 702 DIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKT-VLYTTHQ 779 (1159)
Q Consensus 702 dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kT-vIlVTH~ 779 (1159)
+++.+++++++|||.+ +|....+.++ +.++... +|+| +|++||.
T Consensus 79 --------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~-~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 --------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLF-SIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp --------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHH-HHHHHHHHHTCCEEEEEESS
T ss_pred --------------------------------HHHhCCCEEEEeCccc-cChHHHHHHH-HHHHHHHHcCCcEEEEECCC
Confidence 3467899999999998 5554455554 4565543 4688 7777774
No 139
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.90 E-value=6.1e-12 Score=151.58 Aligned_cols=158 Identities=14% Similarity=0.092 Sum_probs=101.3
Q ss_pred ccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE----------EEEEecCCCCC-CCcHHHHH
Q 001091 612 IKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----------KAYVPQSSWIQ-TGTIRENI 679 (1159)
Q Consensus 612 ~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~----------iayv~Q~pwi~-~gTIreNI 679 (1159)
..+++ ++.+++|+.++|+||+||||||++++|+|+++|.+|.| .+.|. ++++.|++... ..|.++++
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~gii-tied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l 326 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVV-SIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLL 326 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEE-EEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEE-EEcCcccccCCCCCeEEEEeecccccCCcCHHHHH
Confidence 45667 88999999999999999999999999999999999988 77653 45666665411 23777776
Q ss_pred hc-----------CCCCChHHHHHHHHHhccc-------------hHHHhc---cCCCCcccc-------CCCCCCCHHH
Q 001091 680 LF-----------GKDMRQSFYEEVLEGCALN-------------QDIEMW---ADGDLSVVG-------ERGINLSGGQ 725 (1159)
Q Consensus 680 lf-----------G~~~d~~~y~~vl~ac~L~-------------~dl~~l---p~Gd~T~IG-------e~G~~LSGGQ 725 (1159)
.. |+--+++ ...++++..-. +-++.+ +.|....+. .....+||||
T Consensus 327 ~~~LR~~PD~iivgEir~~E-~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~ 405 (511)
T 2oap_1 327 RAALRQRPDYIIVGEVRGRE-AQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNT 405 (511)
T ss_dssp HTTGGGCCSEEEESCCCSTH-HHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSC
T ss_pred HHhhccCCCeEEeCCcCHHH-HHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCC
Confidence 32 3322333 44455554210 112222 223222222 2334689999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CCcEEEE--EccCccccc
Q 001091 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLY--TTHQLEFLD 784 (1159)
Q Consensus 726 KQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l-~~kTvIl--VTH~l~~l~ 784 (1159)
|||.++|. + | ++++|+..++.+++. +..+. .++|+++ +||.++.+.
T Consensus 406 ~~R~~~ai----------~-E-~~GlDp~~~~~~~~~-l~~~~~~~~tii~~~~sH~l~ei~ 454 (511)
T 2oap_1 406 RLRRTKEV----------N-E-ILGIDPVDKNLLVNQ-FVKWDPKEDKHIEVSMPKKLEKMA 454 (511)
T ss_dssp EEEEEEEE----------E-E-EEECCSSSSCCEEEE-EEEEETTTTEEEECSCCTHHHHHH
T ss_pred ceEEEEEE----------E-E-EcCcccCCCeEEEEE-eEEEcccCCEEEEcccHHHHHHHH
Confidence 99987752 2 5 899998876543322 22332 3788875 899988764
No 140
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.89 E-value=6.3e-10 Score=131.62 Aligned_cols=138 Identities=12% Similarity=0.125 Sum_probs=91.5
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-------------------EEEEEecCCCC-CCCcHH
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------------KKAYVPQSSWI-QTGTIR 676 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------------------~iayv~Q~pwi-~~gTIr 676 (1159)
||++++|++++|+|++|||||||++.|.|.+.+.+|+| .+.+ .++|++|++-+ ...|++
T Consensus 287 sl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V-~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~ 365 (503)
T 2yhs_A 287 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSV-MLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIF 365 (503)
T ss_dssp CCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE-EEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHH
T ss_pred eeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeE-EEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHH
Confidence 67888999999999999999999999999999999999 6632 26899998764 457899
Q ss_pred HHHhcCCCCChHHHHHH-HHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHcc-CC-CEEEEeCCCCCCCH
Q 001091 677 ENILFGKDMRQSFYEEV-LEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS-NS-DVYIFDDPFSAVDA 753 (1159)
Q Consensus 677 eNIlfG~~~d~~~y~~v-l~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~-~a-~I~LLDDp~SALD~ 753 (1159)
|||.++..-+ |+-+ ++..++. + +-.+|-.--+||+.++|++.. .| +++|..|++++.|+
T Consensus 366 e~l~~a~~~~---~DvVLIDTaGrl----------~-----~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~a 427 (503)
T 2yhs_A 366 DAIQAAKARN---IDVLIADTAGRL----------Q-----NKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA 427 (503)
T ss_dssp HHHHHHHHTT---CSEEEECCCCSC----------C-----CHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHH
T ss_pred HHHHHHHhcC---CCEEEEeCCCcc----------c-----hhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHH
Confidence 9998753210 0000 0000100 0 001222233688999998754 35 46777778887665
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEcc
Q 001091 754 HTGTHLFKQCLMGLLSQKTVLYTTH 778 (1159)
Q Consensus 754 ~t~~~if~~~i~g~l~~kTvIlVTH 778 (1159)
-....-|++ --+.|.|++||
T Consensus 428 l~~ak~f~~-----~~~itgvIlTK 447 (503)
T 2yhs_A 428 VSQAKLFHE-----AVGLTGITLTK 447 (503)
T ss_dssp HHHHHHHHH-----HTCCSEEEEEC
T ss_pred HHHHHHHHh-----hcCCCEEEEEc
Confidence 432222222 13689999999
No 141
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.88 E-value=4.1e-11 Score=131.16 Aligned_cols=135 Identities=16% Similarity=0.096 Sum_probs=83.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHh---CCccCCCCcEEEECC---------EEEEEecCCCC-CCCcHHHHHhcC------
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSIL---GEIPRISGAAIKVHG---------KKAYVPQSSWI-QTGTIRENILFG------ 682 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~ll---Ge~~~~~G~i~~v~g---------~iayv~Q~pwi-~~gTIreNIlfG------ 682 (1159)
++++++|+||+|||||||++.|. |...+..|.+ ..++ .+.++.|++.+ ++.|+.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~ 104 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHF-LRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRG 104 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHH-HHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHH-HHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 57999999999999999999999 9999988887 5443 13445666554 456889988641
Q ss_pred -------CCCChHHHHHHHHHhccchHHH-hccCCC---Ccc-ccCCCCCCCHHHHHHHHHHHHH-ccCCCEEEEe----
Q 001091 683 -------KDMRQSFYEEVLEGCALNQDIE-MWADGD---LSV-VGERGINLSGGQKQRIQLARAV-YSNSDVYIFD---- 745 (1159)
Q Consensus 683 -------~~~d~~~y~~vl~ac~L~~dl~-~lp~Gd---~T~-IGe~G~~LSGGQKQRIaLARAl-y~~a~I~LLD---- 745 (1159)
.+-+.++.+...+.... |+- .+.--. ... ...+...||| |+ ||+ +.+|++++||
T Consensus 105 ~~~il~g~~~~~~~~~~l~~~~~~--~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~ 175 (246)
T 2bbw_A 105 QHWLLDGFPRTLGQAEALDKICEV--DLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTG 175 (246)
T ss_dssp SCEEEESCCCSHHHHHHHHTTCCC--CEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTC
T ss_pred CeEEEECCCCCHHHHHHHHhhcCC--CEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccccc
Confidence 11111111111100000 000 000000 011 1233457898 66 899 9999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhh
Q 001091 746 DPFSAVDAHTGTHLFKQCLMGL 767 (1159)
Q Consensus 746 Dp~SALD~~t~~~if~~~i~g~ 767 (1159)
|||+++|..+.+.+.+ .+..+
T Consensus 176 EP~~~ld~~~~~~i~~-~l~~~ 196 (246)
T 2bbw_A 176 EPLVQQEDDKPEAVAA-RLRQY 196 (246)
T ss_dssp CBCBCCGGGSHHHHHH-HHHHH
T ss_pred cccccCCCCcHHHHHH-HHHHH
Confidence 9999999998766544 34443
No 142
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.87 E-value=7.1e-11 Score=138.75 Aligned_cols=109 Identities=18% Similarity=0.085 Sum_probs=72.3
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE----------------EEEE---------ecCCCCC--C-
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----------------KAYV---------PQSSWIQ--T- 672 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~----------------iayv---------~Q~pwi~--~- 672 (1159)
++|++++|+||+|||||||+++|+|++++.+|+|..+... ++|. .|+|-+. .
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgE 244 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGE 244 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcC
Confidence 6899999999999999999999999999999998433221 2232 2666542 1
Q ss_pred ----CcHHHHHhcCC----------CCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 001091 673 ----GTIRENILFGK----------DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738 (1159)
Q Consensus 673 ----gTIreNIlfG~----------~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~ 738 (1159)
.|+++|+.++. ..+.....+.+...++.+. ....+|||||+|| ||||+..+
T Consensus 245 iRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~-------------~~~~~LSgg~~QR--LaraL~~~ 309 (418)
T 1p9r_A 245 IRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF-------------LISSSLLGVLAQR--LVRTLCPD 309 (418)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH-------------HHHHHEEEEEEEE--EEEEECTT
T ss_pred cCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH-------------HHHHHHHHHHHHH--hhhhhcCC
Confidence 36777775431 0111111112222333221 1345899999999 99999999
Q ss_pred CCEEEE
Q 001091 739 SDVYIF 744 (1159)
Q Consensus 739 a~I~LL 744 (1159)
|++..-
T Consensus 310 p~~~~~ 315 (418)
T 1p9r_A 310 CKEPYE 315 (418)
T ss_dssp TCEEEE
T ss_pred CCccCC
Confidence 998763
No 143
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.85 E-value=3e-10 Score=115.83 Aligned_cols=70 Identities=20% Similarity=0.162 Sum_probs=60.7
Q ss_pred cccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE--------EEEEecCCCCCCCcHHHHHh-
Q 001091 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------KAYVPQSSWIQTGTIRENIL- 680 (1159)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~--------iayv~Q~pwi~~gTIreNIl- 680 (1159)
...+++ ||++++|+.++++||+|||||||+++|.|.+ |.+|+| .++|. -.|++|++-+++-|+.||+.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V-~~~g~~i~~~~~~~~~~~q~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNV-KSPTYTLVEEYNIAGKMIYHFDLYRLADPEELEF 97 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCC-CCCTTTCEEEEEETTEEEEEEECTTCSCTTHHHH
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeE-EECCEeeeeeccCCCcceeccccccCCcHHHHHH
Confidence 357888 9999999999999999999999999999999 899998 76651 12789998888889999994
Q ss_pred cC
Q 001091 681 FG 682 (1159)
Q Consensus 681 fG 682 (1159)
+|
T Consensus 98 ~g 99 (158)
T 1htw_A 98 MG 99 (158)
T ss_dssp ST
T ss_pred cC
Confidence 56
No 144
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.84 E-value=2.1e-09 Score=125.50 Aligned_cols=149 Identities=19% Similarity=0.267 Sum_probs=88.0
Q ss_pred EeeCCcEEEEEcCCCCChhHHHH--HHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHH
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLS--SILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEG 696 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~--~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~a 696 (1159)
-+++|++++|+||+|||||||++ ++.+..++..|.- .+.+.|+.-+. .++.++..+..+.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~---~~~viyid~E~---------------~~~~~rl~~~a~~ 235 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGG---EGKCLYIDTEG---------------TFRPVRLVSIAQR 235 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCC---SSEEEEEESSS---------------CCCHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCC---CCcEEEEeCCC---------------ccCHHHHHHHHHH
Confidence 47899999999999999999999 5567777755521 24455555432 1234555555555
Q ss_pred hccchH--HHhccCCCCccccCCCCCCC-HHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHHH------------HHH
Q 001091 697 CALNQD--IEMWADGDLSVVGERGINLS-GGQKQRIQLARAVY--SNSDVYIFDDPFSAVDAHTG------------THL 759 (1159)
Q Consensus 697 c~L~~d--l~~lp~Gd~T~IGe~G~~LS-GGQKQRIaLARAly--~~a~I~LLDDp~SALD~~t~------------~~i 759 (1159)
.++..+ ++.+- +.. ..+ ..|.+++.-+++.. .+|+++++|+|++.+|++.. ..+
T Consensus 236 ~gl~~~~vleni~------~~~---~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~i 306 (400)
T 3lda_A 236 FGLDPDDALNNVA------YAR---AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKF 306 (400)
T ss_dssp TTCCHHHHHHTEE------EEE---CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHH
T ss_pred cCCChHhHhhcEE------Eec---cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHH
Confidence 555432 11111 111 112 23455555444443 46999999999999997643 223
Q ss_pred HHHHHhhhc--CCcEEEEEccCcc-------------------ccc-ccCEEEEEeCC
Q 001091 760 FKQCLMGLL--SQKTVLYTTHQLE-------------------FLD-AADLVLVMKDG 795 (1159)
Q Consensus 760 f~~~i~g~l--~~kTvIlVTH~l~-------------------~l~-~aD~Iivl~~G 795 (1159)
++ .+..+. .|.|+|+|+|-.. .+. .+|.++.|++|
T Consensus 307 l~-~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 307 MR-ALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp HH-HHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred HH-HHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 22 233333 3899999999732 122 37888888765
No 145
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.81 E-value=1.4e-09 Score=127.47 Aligned_cols=148 Identities=18% Similarity=0.115 Sum_probs=89.0
Q ss_pred ccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcE-EEECCEEEEEecCCCCCCCcHHHHHhcC------CCC
Q 001091 614 LTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA-IKVHGKKAYVPQSSWIQTGTIRENILFG------KDM 685 (1159)
Q Consensus 614 L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i-~~v~g~iayv~Q~pwi~~gTIreNIlfG------~~~ 685 (1159)
-++ +++++.|+.++|+|++|||||||+++|.|..+...+.- .++..+++++.|+. -.+-++.|+.-+. ..+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L 225 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGL 225 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhh
Confidence 346 89999999999999999999999999999854322210 01223455665543 0111222222211 112
Q ss_pred ChHHHHHHHHHhcc-c--hHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 001091 686 RQSFYEEVLEGCAL-N--QDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQ 762 (1159)
Q Consensus 686 d~~~y~~vl~ac~L-~--~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~ 762 (1159)
.. .+.+.++.|.. - -|+. .+.-.+||+||+||+++|||+..+|.|+++ +.+|.... ..+++
T Consensus 226 ~~-~fl~~~era~~lL~vvDls----------~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~ 289 (416)
T 1udx_A 226 GL-EFLRHIARTRVLLYVLDAA----------DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKA 289 (416)
T ss_dssp CH-HHHHHHTSSSEEEEEEETT----------SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHH
T ss_pred hH-HHHHHHHHHHhhhEEeCCc----------cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHH
Confidence 12 22222333321 1 1221 122347999999999999999999999999 89998765 34444
Q ss_pred HHhhhc-CCcEEEEEcc
Q 001091 763 CLMGLL-SQKTVLYTTH 778 (1159)
Q Consensus 763 ~i~g~l-~~kTvIlVTH 778 (1159)
....+. .+.+++.+|.
T Consensus 290 l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 290 LADALAREGLAVLPVSA 306 (416)
T ss_dssp HHHHHHTTTSCEEECCT
T ss_pred HHHHHHhcCCeEEEEEC
Confidence 332222 3567777665
No 146
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.81 E-value=5.2e-09 Score=120.37 Aligned_cols=127 Identities=13% Similarity=0.144 Sum_probs=74.8
Q ss_pred EEEEEcCCCCChhHHHHHHhC-CccCCCCcEEEECC-----------EEEEEecCCCCC-CCcHHHHHhcCCCCChHHHH
Q 001091 625 KVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHG-----------KKAYVPQSSWIQ-TGTIRENILFGKDMRQSFYE 691 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llG-e~~~~~G~i~~v~g-----------~iayv~Q~pwi~-~gTIreNIlfG~~~d~~~y~ 691 (1159)
.+.++||+|+||||+++++.| .+.+..|.+ .++| .++|++|.+++. +++- .+. .+.+..+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~ 110 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRL-KIDVRQFVTASNRKLELNVVSSPYHLEITPSD-----MGN-NDRIVIQ 110 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC-------------------CCEECSSEEEECCC----------CCHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeE-EecceeecccccccceeeeecccceEEecHhh-----cCC-cchHHHH
Confidence 389999999999999999999 578888887 6653 467788877652 2110 010 1111233
Q ss_pred HHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCc
Q 001091 692 EVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK 771 (1159)
Q Consensus 692 ~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~k 771 (1159)
+.++.......+. ..+ +||| +..+++++++|||.+ +|+.....+. +.+....+++
T Consensus 111 ~~i~~~~~~~~~~-------~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~-~~le~~~~~~ 165 (354)
T 1sxj_E 111 ELLKEVAQMEQVD-------FQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALR-RTMEKYSKNI 165 (354)
T ss_dssp HHHHHHTTTTC-----------------------------------CCEEEEEECTTS-SCHHHHHHHH-HHHHHSTTTE
T ss_pred HHHHHHHHhcccc-------ccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHH-HHHHhhcCCC
Confidence 3333322111111 111 5676 778999999999999 9999877664 4566666788
Q ss_pred EEEEEccCcccc
Q 001091 772 TVLYTTHQLEFL 783 (1159)
Q Consensus 772 TvIlVTH~l~~l 783 (1159)
++|++||+++.+
T Consensus 166 ~~Il~t~~~~~l 177 (354)
T 1sxj_E 166 RLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEESCSCSS
T ss_pred EEEEEeCCHHHH
Confidence 999999998754
No 147
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.80 E-value=4.2e-10 Score=129.04 Aligned_cols=143 Identities=15% Similarity=0.204 Sum_probs=92.4
Q ss_pred ccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-----------------EEEEEecCCCCCC-
Q 001091 612 IKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------------KKAYVPQSSWIQT- 672 (1159)
Q Consensus 612 ~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-----------------~iayv~Q~pwi~~- 672 (1159)
..+++ ++++++|+.++|+|++|||||||+++|.|.+.|.+|+| .+.+ +++|++|+|.+|.
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v-~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 121 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKV-AVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIR 121 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE-EEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEE
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEE-EEEEEcCcccccccchHHHhhhheeeccCcccccc
Confidence 57888 99999999999999999999999999999999999998 5533 3688899887764
Q ss_pred ---------C---cHHHHHh-c---CCCC----------ChHHHHHHHHHhcc---c------hHHHhccCC-----CCc
Q 001091 673 ---------G---TIRENIL-F---GKDM----------RQSFYEEVLEGCAL---N------QDIEMWADG-----DLS 712 (1159)
Q Consensus 673 ---------g---TIreNIl-f---G~~~----------d~~~y~~vl~ac~L---~------~dl~~lp~G-----d~T 712 (1159)
| +++|.+. + |.++ .+. .+.+.+.+ - ++++.+..+ +.-
T Consensus 122 ~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~iv 198 (337)
T 2qm8_A 122 PSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGIFELADMI 198 (337)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTHHHHCSEE
T ss_pred cCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEE
Confidence 2 2344331 1 1110 111 11111111 0 011111111 000
Q ss_pred ---cccC-CCCCCCHHHHHHHHHHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHH
Q 001091 713 ---VVGE-RGINLSGGQKQRIQLARAVYS------NSDVYIFDDPFSAVDAHTGTHLFKQ 762 (1159)
Q Consensus 713 ---~IGe-~G~~LSGGQKQRIaLARAly~------~a~I~LLDDp~SALD~~t~~~if~~ 762 (1159)
.+.- ....+|+||+|++..|+++.. +|+++. +||+|...-+.+.+.
T Consensus 199 vlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~ 254 (337)
T 2qm8_A 199 AVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSR 254 (337)
T ss_dssp EEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHH
T ss_pred EEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHH
Confidence 0110 123579999999999999987 688876 999999987777654
No 148
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.78 E-value=1.3e-09 Score=123.20 Aligned_cols=102 Identities=16% Similarity=0.192 Sum_probs=74.6
Q ss_pred eEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEE---CC-------------EEEEEecCCCCC------CCcH
Q 001091 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV---HG-------------KKAYVPQSSWIQ------TGTI 675 (1159)
Q Consensus 618 l~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v---~g-------------~iayv~Q~pwi~------~gTI 675 (1159)
+++.+|+.++++||+|||||||+++|+ ..+|.+|+| .. +| .++|++|+|-++ +-|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i-~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEV-SEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC----------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCccccc-ccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 345689999999999999999999999 999999998 66 44 269999999764 5688
Q ss_pred HHHH--hcCC------------CC--ChHHHHHHHHHhccch-HHHhccCCCCccccCCCCCCCHHHHHHHHHHH
Q 001091 676 RENI--LFGK------------DM--RQSFYEEVLEGCALNQ-DIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1159)
Q Consensus 676 reNI--lfG~------------~~--d~~~y~~vl~ac~L~~-dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLAR 733 (1159)
||+ .|+. +. ...+.+++++..+|.+ -.+..| ..|||.+++++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 998 5641 11 1245667777777764 233332 468998888899987
No 149
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.76 E-value=6.8e-09 Score=118.21 Aligned_cols=131 Identities=13% Similarity=0.091 Sum_probs=81.6
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-------------------EEEEEecCCCCC-CCcHHHHH
Q 001091 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------------KKAYVPQSSWIQ-TGTIRENI 679 (1159)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------------------~iayv~Q~pwi~-~gTIreNI 679 (1159)
.++|+.++++||+||||||+++.|.|.++|.+|+| .+.| .+.|++|++-+. ..|++|||
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V-~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSV-VIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE-EEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEE-EEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 36899999999999999999999999999999998 6543 145888887654 46889998
Q ss_pred hcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCC-CC-CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 001091 680 LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI-NL-SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT 757 (1159)
Q Consensus 680 lfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~-~L-SGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~ 757 (1159)
.++... ..|. -.+..-|. .. ..=.++--.++|++..++++++||.++ +.|.....
T Consensus 205 ~~~~~~--------------~~d~--------vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t-~~~~~~~~ 261 (328)
T 3e70_C 205 QHAKAR--------------GIDV--------VLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALA-GNAIVEQA 261 (328)
T ss_dssp HHHHHH--------------TCSE--------EEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGG-TTHHHHHH
T ss_pred HHHHhc--------------cchh--------hHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHH-HHHHHHHH
Confidence 765310 0010 00111111 00 001122234899998777777777443 33332211
Q ss_pred HHHHHHHhhhcCCcEEEEEccC
Q 001091 758 HLFKQCLMGLLSQKTVLYTTHQ 779 (1159)
Q Consensus 758 ~if~~~i~g~l~~kTvIlVTH~ 779 (1159)
+-| .. ..+.|.|++||-
T Consensus 262 ~~~----~~-~~~it~iilTKl 278 (328)
T 3e70_C 262 RQF----NE-AVKIDGIILTKL 278 (328)
T ss_dssp HHH----HH-HSCCCEEEEECG
T ss_pred HHH----HH-hcCCCEEEEeCc
Confidence 111 11 137899999994
No 150
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.54 E-value=5.8e-10 Score=129.62 Aligned_cols=157 Identities=15% Similarity=0.165 Sum_probs=104.0
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhC------------CccCCCCcEEEECC-----------------EEEEEecCCC
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSILG------------EIPRISGAAIKVHG-----------------KKAYVPQSSW 669 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~llG------------e~~~~~G~i~~v~g-----------------~iayv~Q~pw 669 (1159)
++++|..++|+|++|+|||||+++|.| -.+|+.|.+ .++| ...++.+.|-
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v-~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKV-AVPDERFDWLCEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEE-EECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeee-eeCCcchhhhhhhcccccccCcceEEEeccc
Confidence 467899999999999999999999999 456888888 8876 3457778887
Q ss_pred CCCC-cHHHHHhcCCCCChHHHHHHHHHhc-cchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCC--CEEEEe
Q 001091 670 IQTG-TIRENILFGKDMRQSFYEEVLEGCA-LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS--DVYIFD 745 (1159)
Q Consensus 670 i~~g-TIreNIlfG~~~d~~~y~~vl~ac~-L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a--~I~LLD 745 (1159)
+..+ |..|++ . ..+...++.|. +..-++.. +| +....+||+. || |+.++|
T Consensus 95 l~~~~s~~e~L------~-~~fl~~ir~~d~il~Vvd~~--~d-----~~i~~v~~~~------------dP~~di~ild 148 (392)
T 1ni3_A 95 LTKGASTGVGL------G-NAFLSHVRAVDAIYQVVRAF--DD-----AEIIHVEGDV------------DPIRDLSIIV 148 (392)
T ss_dssp GCCCCCSSSSS------C-HHHHHHHTTCSEEEEEEECC--CT-----TCSSCCSSSS------------CHHHHHHHHH
T ss_pred cccCCcHHHHH------H-HHHHHHHHHHHHHHHHHhcc--cc-----ceeeeecccc------------Ccchhhhhch
Confidence 6543 322222 1 12223333332 11111111 11 2223355553 88 999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhh-c-CCcEEEEEccCccccc-ccCEEE-EEeCC-eEEEecChHH
Q 001091 746 DPFSAVDAHTGTHLFKQCLMGL-L-SQKTVLYTTHQLEFLD-AADLVL-VMKDG-KIEQSGKYED 805 (1159)
Q Consensus 746 Dp~SALD~~t~~~if~~~i~g~-l-~~kTvIlVTH~l~~l~-~aD~Ii-vl~~G-~I~e~Gt~~e 805 (1159)
||++..|+..-++..+. +... . .|+|++ +|..+.+. .+|+|. +|++| +++..|+.++
T Consensus 149 eel~~~D~~~~~k~~~~-l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 149 DELLIKDAEFVEKHLEG-LRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred hhhHHHHHHHHHHHHHH-HHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCCCH
Confidence 99999999987766553 3333 3 356653 99887754 589999 89999 8887776543
No 151
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.53 E-value=1.3e-09 Score=123.34 Aligned_cols=58 Identities=14% Similarity=0.082 Sum_probs=50.1
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEe-------------------eCCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKI-------------------MKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i-------------------~~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
..|+++|+++.|. +.+++ ++.+ ++|++++|+|++|||||||+++|.|.+.
T Consensus 36 ~~i~~~~v~~~y~----------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 36 EDLSLEEVAEIYL----------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp TTCCHHHHHHTHH----------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred cccchHhHHHHHH----------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3578889988872 46677 7776 8999999999999999999999999998
Q ss_pred --CCCCcEEEE
Q 001091 649 --RISGAAIKV 657 (1159)
Q Consensus 649 --~~~G~i~~v 657 (1159)
|.+|+| .+
T Consensus 106 ~~~~~G~i-~v 115 (308)
T 1sq5_A 106 RWPEHRRV-EL 115 (308)
T ss_dssp TSTTCCCE-EE
T ss_pred hCCCCCeE-EE
Confidence 899998 66
No 152
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.52 E-value=6.9e-08 Score=108.52 Aligned_cols=138 Identities=13% Similarity=0.027 Sum_probs=87.9
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccc
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALN 700 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~ 700 (1159)
++|+.++++|++||||||++..|.+.+.+.+|. ++.++.+++ +..+..|++... .+..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~------~V~lv~~D~--~r~~a~eqL~~~-----------~~~~g-- 161 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK------KIAFITTDT--YRIAAVEQLKTY-----------AELLQ-- 161 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC------CEEEEECCC--SSTTHHHHHHHH-----------HTTTT--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC------EEEEEecCc--ccchHHHHHHHH-----------HHhcC--
Confidence 478999999999999999999999999887783 368888988 455555554310 00001
Q ss_pred hHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc---CCcEEEEE-
Q 001091 701 QDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL---SQKTVLYT- 776 (1159)
Q Consensus 701 ~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l---~~kTvIlV- 776 (1159)
+|. ... ..++..|.+++++ +++|++|+| |+++|+.... .+.+...-+. .+.+.+++
T Consensus 162 -----l~~----~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~-~~~el~~~l~~~~~~~~~lVl~ 221 (296)
T 2px0_A 162 -----APL----EVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQ-YIDELKETIPFESSIQSFLVLS 221 (296)
T ss_dssp -----CCC----CBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHH-HHHHHHHHSCCCTTEEEEEEEE
T ss_pred -----CCe----Eec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHH-HHHHHHHHHhhcCCCeEEEEEE
Confidence 110 001 1235568888875 999999999 8899976543 3343322111 23344444
Q ss_pred -ccCcccccc-cCEEEEEeCCeEEE
Q 001091 777 -THQLEFLDA-ADLVLVMKDGKIEQ 799 (1159)
Q Consensus 777 -TH~l~~l~~-aD~Iivl~~G~I~e 799 (1159)
||..+.+.. +|++-.++.|.|+-
T Consensus 222 at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 222 ATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp TTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred CCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 888665543 66555556666654
No 153
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.50 E-value=8.5e-08 Score=108.10 Aligned_cols=106 Identities=18% Similarity=0.189 Sum_probs=71.3
Q ss_pred eEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHh
Q 001091 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGC 697 (1159)
Q Consensus 618 l~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac 697 (1159)
+..++|+.++|+|++||||||++..|.+.+.+..|+| .++..++ +.....|++ +...+..
T Consensus 99 ~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV-------~lv~~D~--~r~~a~eqL-----------~~~~~~~ 158 (306)
T 1vma_A 99 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSV-------VLAAADT--FRAAAIEQL-----------KIWGERV 158 (306)
T ss_dssp CCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE-------EEEEECT--TCHHHHHHH-----------HHHHHHH
T ss_pred ccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEE-------EEEcccc--ccHHHHHHH-----------HHHHHHc
Confidence 3456899999999999999999999999998877776 3444443 221111111 1111111
Q ss_pred ccchHHHhccCCCCccccCCCCCCCHHHHHHH---HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 001091 698 ALNQDIEMWADGDLSVVGERGINLSGGQKQRI---QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQ 762 (1159)
Q Consensus 698 ~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRI---aLARAly~~a~I~LLDDp~SALD~~t~~~if~~ 762 (1159)
+ +| .+ ..+||||.||+ +++||+.+++|++|+|+|.. .++...++++
T Consensus 159 g-------l~-----~~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~e 207 (306)
T 1vma_A 159 G-------AT-----VI----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEE 207 (306)
T ss_dssp T-------CE-----EE----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHH
T ss_pred C-------Cc-----EE----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHH
Confidence 1 11 11 13579999999 99999999999999999974 3444555543
No 154
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.48 E-value=4.7e-07 Score=98.04 Aligned_cols=157 Identities=17% Similarity=0.167 Sum_probs=83.8
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHh-cCCCCChHHHHHHHHHh
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENIL-FGKDMRQSFYEEVLEGC 697 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIl-fG~~~d~~~y~~vl~ac 697 (1159)
-+++|++++|+||+|||||||+..++....+..+.+ .|++-+.- ...+++... +|-+. +.+. +.-
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v-------~~~~~e~~--~~~~~~~~~~~g~~~--~~~~---~~~ 84 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPG-------IYVALEEH--PVQVRQNMAQFGWDV--KPYE---EKG 84 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCE-------EEEESSSC--HHHHHHHHHTTTCCC--HHHH---HHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE-------EEEEccCC--HHHHHHHHHHcCCCH--HHHh---hCC
Confidence 488999999999999999999777766554444443 56554431 122333332 23221 1111 100
Q ss_pred ccc-hH-----HHhccCCCCccccCCCCCCCHHHHHHHHHHHHHc--cCCCEEEEeCCCCCC--CHHHHHHHHHHHHhhh
Q 001091 698 ALN-QD-----IEMWADGDLSVVGERGINLSGGQKQRIQLARAVY--SNSDVYIFDDPFSAV--DAHTGTHLFKQCLMGL 767 (1159)
Q Consensus 698 ~L~-~d-----l~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly--~~a~I~LLDDp~SAL--D~~t~~~if~~~i~g~ 767 (1159)
.+. .| +..++... ..+-+ -+..+.+....++.+. .+++++++|++++-. |+...++.+.+..+.+
T Consensus 85 ~l~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~ 159 (247)
T 2dr3_A 85 MFAMVDAFTAGIGKSKEYE-KYIVH----DLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVL 159 (247)
T ss_dssp SEEEEECSTTTTCC--CCC-SCBCS----CCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHH
T ss_pred cEEEEecchhhcccccccc-ccccc----CccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHH
Confidence 010 00 00000000 00001 1123334444444444 479999999999887 5533344545433322
Q ss_pred -cCCcEEEEEccCccc---------ccccCEEEEEeC
Q 001091 768 -LSQKTVLYTTHQLEF---------LDAADLVLVMKD 794 (1159)
Q Consensus 768 -l~~kTvIlVTH~l~~---------l~~aD~Iivl~~ 794 (1159)
-.|.|+|+++|.... ...||.|+.|+.
T Consensus 160 ~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 160 AGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 247899999997754 245899999864
No 155
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.48 E-value=1.9e-08 Score=113.15 Aligned_cols=61 Identities=23% Similarity=0.274 Sum_probs=42.0
Q ss_pred eEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEE---CCE------------EEEEecCCCCCC-----CcHHH
Q 001091 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV---HGK------------KAYVPQSSWIQT-----GTIRE 677 (1159)
Q Consensus 618 l~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v---~g~------------iayv~Q~pwi~~-----gTIre 677 (1159)
+++.+|+.++|+||+|+|||||+++|+|+.++..|+| .. +|+ ++|++|+|-+.. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I-~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEI-SEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccce-eeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-H
Confidence 5678999999999999999999999999999999998 65 331 589999997764 578 9
Q ss_pred HHh
Q 001091 678 NIL 680 (1159)
Q Consensus 678 NIl 680 (1159)
|+.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 993
No 156
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.47 E-value=4.6e-08 Score=110.36 Aligned_cols=88 Identities=20% Similarity=0.232 Sum_probs=62.7
Q ss_pred eEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEE---CC-------------EEEEEecCCC------------
Q 001091 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV---HG-------------KKAYVPQSSW------------ 669 (1159)
Q Consensus 618 l~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v---~g-------------~iayv~Q~pw------------ 669 (1159)
+++.+|+.++++||+|||||||+++|.|..+|.+|+| .+ +| .++|+.|+|-
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i-~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV-SEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC--------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccce-ecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 4567899999999999999999999999999999998 66 33 3689999985
Q ss_pred -----CCCCcHHHHHhcCCC----CChHHHHHHHHHhccchH-HHhcc
Q 001091 670 -----IQTGTIRENILFGKD----MRQSFYEEVLEGCALNQD-IEMWA 707 (1159)
Q Consensus 670 -----i~~gTIreNIlfG~~----~d~~~y~~vl~ac~L~~d-l~~lp 707 (1159)
+..-|+ ||+.|+.- -.+.+.+++++..+|.++ .+..|
T Consensus 243 ~~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 345688 99998531 124577888998888533 34443
No 157
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.45 E-value=3.1e-10 Score=126.43 Aligned_cols=129 Identities=16% Similarity=0.121 Sum_probs=79.5
Q ss_pred ccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE-------------EEEEecCC-CCC-CCcH
Q 001091 612 IKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYVPQSS-WIQ-TGTI 675 (1159)
Q Consensus 612 ~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~-------------iayv~Q~p-wi~-~gTI 675 (1159)
..+++ ++++++| ++++||+|||||||+++|.|+..+ |.+ .++|. +++++|++ ..+ .-++
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i-~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFI-SVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEE-EEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEE-EEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 46777 8999999 999999999999999999999876 555 66541 23333332 111 1233
Q ss_pred HHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC------
Q 001091 676 RENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS------ 749 (1159)
Q Consensus 676 reNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~S------ 749 (1159)
.|||....+..... + . +.....+.+.-..|||||+||+.+|+|+-.+|+++ |+++.
T Consensus 109 ~Deid~~~~~r~~~--~---~-----------~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd 170 (274)
T 2x8a_A 109 FDEVDALCPRRSDR--E---T-----------GASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLD 170 (274)
T ss_dssp EETCTTTCC-------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSC
T ss_pred eehhhhhhcccCCC--c---c-----------hHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCC
Confidence 33332211100000 0 0 00001111222369999999999999999999974 98864
Q ss_pred ------CCCHHHHHHHHHHH
Q 001091 750 ------AVDAHTGTHLFKQC 763 (1159)
Q Consensus 750 ------ALD~~t~~~if~~~ 763 (1159)
.-|.+....|++..
T Consensus 171 ~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 171 KTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp EEEECCSCCHHHHHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHH
Confidence 33677777776653
No 158
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.43 E-value=5.4e-09 Score=112.36 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=85.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCc---cCCCCcEEEE--------CC--------------EEEEEecCC------CC
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEI---PRISGAAIKV--------HG--------------KKAYVPQSS------WI 670 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~---~~~~G~i~~v--------~g--------------~iayv~Q~p------wi 670 (1159)
.+..++|+|++||||||+.+.|.+.+ .+..|.+ .. +| .++++.|++ .+
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI-YRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVIL 82 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH-HHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcce-eehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEE
Confidence 35789999999999999999998876 5666765 33 22 256777765 34
Q ss_pred CCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccc-cCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCC
Q 001091 671 QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV-GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF 748 (1159)
Q Consensus 671 ~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~I-Ge~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~ 748 (1159)
...++.+|+. ++...+++..|+..+.+.....+.++.+ .++|.-++|+ .++++++.++|+.+++|+.
T Consensus 83 ~~~~v~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 83 EGEDVSGEIR------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp TTEECHHHHT------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred CCeeCchhhC------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 5556666653 4567788888888888877666665555 3578889987 5677888999999998874
No 159
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.28 E-value=1.1e-07 Score=100.36 Aligned_cols=60 Identities=15% Similarity=0.158 Sum_probs=42.2
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC-------------EEEEEecCCCCCCC-cHHHHHhc
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTG-TIRENILF 681 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g-------------~iayv~Q~pwi~~g-TIreNIlf 681 (1159)
|+++++|++++|+||+|||||||++.|.|.++ .+ .+.+ .++|++|++-.+.. +.++|+.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EI-KISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLE 74 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SE-EECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----Ce-EEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEe
Confidence 46678999999999999999999999999874 23 3322 36789998765543 44555543
No 160
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.28 E-value=2.1e-06 Score=96.45 Aligned_cols=108 Identities=17% Similarity=0.088 Sum_probs=71.9
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHH
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEG 696 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~a 696 (1159)
+++ +|+.++++|++||||||++..|.|.+.+..|+| .++..++. .....+ ......+.
T Consensus 94 ~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v-------~l~~~d~~--~~~~~~-----------ql~~~~~~ 151 (295)
T 1ls1_A 94 VLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRP-------LLVAADTQ--RPAARE-----------QLRLLGEK 151 (295)
T ss_dssp CCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCE-------EEEECCSS--CHHHHH-----------HHHHHHHH
T ss_pred ecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE-------EEecCCcc--cHhHHH-----------HHHHhccc
Confidence 565 899999999999999999999999999887777 33444432 111111 11111111
Q ss_pred hccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC-CCCCCHHHHHHH
Q 001091 697 CALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP-FSAVDAHTGTHL 759 (1159)
Q Consensus 697 c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp-~SALD~~t~~~i 759 (1159)
. .+..+|.|. .-...+-+|.+|+++...++|++|+|+| ++++|...-..+
T Consensus 152 ~----~l~~~~~~~---------~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l 202 (295)
T 1ls1_A 152 V----GVPVLEVMD---------GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGEL 202 (295)
T ss_dssp H----TCCEEECCT---------TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHH
T ss_pred C----CeEEEEcCC---------CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHH
Confidence 1 122233221 1234456789999998899999999999 999998765544
No 161
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.26 E-value=1.8e-06 Score=102.95 Aligned_cols=166 Identities=10% Similarity=0.070 Sum_probs=98.6
Q ss_pred cccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHh---cCC-----
Q 001091 613 KLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENIL---FGK----- 683 (1159)
Q Consensus 613 ~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIl---fG~----- 683 (1159)
.|++ ..-+++|+++.|.|++|+|||||+..+.+...+..|. .+.|++-+-- ...+++.++ +|-
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~------~Vl~~s~E~s--~~~l~~r~~~~~~~~~~~~l 263 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNE------NVAIFSLEMS--AQQLVMRMLCAEGNINAQNL 263 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSC------CEEEEESSSC--HHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCC------cEEEEECCCC--HHHHHHHHHHHHcCCCHHHH
Confidence 3444 4458899999999999999999999999988765452 3566664411 112222221 111
Q ss_pred ---CCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHH----
Q 001091 684 ---DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY--SNSDVYIFDDPFSAVDAH---- 754 (1159)
Q Consensus 684 ---~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly--~~a~I~LLDDp~SALD~~---- 754 (1159)
.++++.++++.++... +... .-.+-+ ..++|++|.+ +.||++. .+++++++|++..-.+..
T Consensus 264 ~~g~l~~~~~~~~~~a~~~---l~~~----~l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~ 333 (454)
T 2r6a_A 264 RTGKLTPEDWGKLTMAMGS---LSNA----GIYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKE 333 (454)
T ss_dssp HTSCCCHHHHHHHHHHHHH---HHSS----CEEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC---
T ss_pred hcCCCCHHHHHHHHHHHHH---HhcC----CEEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCC
Confidence 2344444444444321 1111 111222 2478999876 5667765 579999999999877432
Q ss_pred HH----HHHHHHHHhhhc--CCcEEEEEcc---------C--cc--------cc-cccCEEEEEeCCeE
Q 001091 755 TG----THLFKQCLMGLL--SQKTVLYTTH---------Q--LE--------FL-DAADLVLVMKDGKI 797 (1159)
Q Consensus 755 t~----~~if~~~i~g~l--~~kTvIlVTH---------~--l~--------~l-~~aD~Iivl~~G~I 797 (1159)
.. ..+. +.++.+. .|.|||+++| . +. .+ ..||.|+.|..++.
T Consensus 334 ~~~~~i~~i~-~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 334 NRQQEVSEIS-RSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp -CHHHHHHHH-HHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CHHHHHHHHH-HHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 11 1222 2233332 2789999999 1 22 23 34999999986653
No 162
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.25 E-value=2e-06 Score=98.89 Aligned_cols=144 Identities=19% Similarity=0.309 Sum_probs=84.2
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhc
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCA 698 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~ 698 (1159)
-+++|+++.|.||+|||||||+..+.....+..|. +.|++-+.- .++. + .+..+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~-------vlyi~~E~~---------------~~~~-~---a~~lG 110 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGI-------AAFIDAEHA---------------LDPE-Y---AKKLG 110 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-------EEEEESSCC---------------CCHH-H---HHHTT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCe-------EEEEECCCC---------------cCHH-H---HHHcC
Confidence 47899999999999999999999998887665444 466665531 1111 1 11122
Q ss_pred cchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccC--CCEEEEeCCCCCC----------CHH--HHHHHHHHHH
Q 001091 699 LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN--SDVYIFDDPFSAV----------DAH--TGTHLFKQCL 764 (1159)
Q Consensus 699 L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~--a~I~LLDDp~SAL----------D~~--t~~~if~~~i 764 (1159)
.+ .+.+. +-. ..++ .|-+.++|++.++ |+++++|++++-+ |++ ...+.+.+.+
T Consensus 111 ~~--~~~l~------i~~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l 177 (349)
T 2zr9_A 111 VD--TDSLL------VSQ---PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQAL 177 (349)
T ss_dssp CC--GGGCE------EEC---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHH
T ss_pred CC--HHHeE------Eec---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHH
Confidence 21 11111 100 0123 3446678888765 9999999999988 331 1111222333
Q ss_pred hhh---c--CCcEEEEEccCccc----------------c-cccCEEEEEeCCeEEEec
Q 001091 765 MGL---L--SQKTVLYTTHQLEF----------------L-DAADLVLVMKDGKIEQSG 801 (1159)
Q Consensus 765 ~g~---l--~~kTvIlVTH~l~~----------------l-~~aD~Iivl~~G~I~e~G 801 (1159)
..+ + .|.|+|+++|-..- + ..||.++.++.+++...|
T Consensus 178 ~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 178 RKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp HHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred HHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 322 2 37899999885431 3 247777777766655443
No 163
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.21 E-value=3.5e-07 Score=95.40 Aligned_cols=117 Identities=24% Similarity=0.354 Sum_probs=51.7
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCCcc-------------CCCCcEEEECCEEEEEecCCC-----------CCCCcHHHH
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGEIP-------------RISGAAIKVHGKKAYVPQSSW-----------IQTGTIREN 678 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe~~-------------~~~G~i~~v~g~iayv~Q~pw-----------i~~gTIreN 678 (1159)
|+.++|+||+|||||||+++|+|+++ |..|++ +| +.|.+|++- +.++++.+|
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~---~g-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 76 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV---NG-KDYNFVSVDEFKSMIKNNEFIEWAQFSGN 76 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC---BT-TTBEECCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc---CC-eeeeecCHHHHHHHHhhcceeeEEEEece
Confidence 57899999999999999999999998 555543 22 345555432 223333333
Q ss_pred HhcCCCCChHHHHHHHHHh---ccchH------HHh-----------cc---CCCCccccCCCCCCCHHHHHHHHHHHHH
Q 001091 679 ILFGKDMRQSFYEEVLEGC---ALNQD------IEM-----------WA---DGDLSVVGERGINLSGGQKQRIQLARAV 735 (1159)
Q Consensus 679 IlfG~~~d~~~y~~vl~ac---~L~~d------l~~-----------lp---~Gd~T~IGe~G~~LSGGQKQRIaLARAl 735 (1159)
. +|.+ .+..+++++.. -++-| +.. .| +-....+-+||..-....++|++-|++-
T Consensus 77 ~-yg~~--~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~~~ 153 (186)
T 3a00_A 77 Y-YGST--VASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAE 153 (186)
T ss_dssp E-EEEE--HHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC----------------------------
T ss_pred e-ccCc--HHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 2 3332 34455666552 12111 111 01 2333445678888778899999999875
Q ss_pred c-----cCCCEEEEeC
Q 001091 736 Y-----SNSDVYIFDD 746 (1159)
Q Consensus 736 y-----~~a~I~LLDD 746 (1159)
. ..+|.+|..|
T Consensus 154 ~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 154 LAYAETGAHDKVIVND 169 (186)
T ss_dssp -----CCCCSEEEECS
T ss_pred HHhhcccCCcEEEECc
Confidence 4 5678888777
No 164
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.16 E-value=5.1e-09 Score=116.66 Aligned_cols=43 Identities=28% Similarity=0.454 Sum_probs=36.7
Q ss_pred ccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC
Q 001091 612 IKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (1159)
Q Consensus 612 ~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g 659 (1159)
..+++ ++++++| ++|+||+|||||||+++|.++.. .|.+ .+++
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i-~~~~ 106 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFI-TASG 106 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEE-EEEH
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEE-EecH
Confidence 46777 8999999 99999999999999999999885 6766 6553
No 165
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.11 E-value=7.3e-09 Score=113.62 Aligned_cols=43 Identities=28% Similarity=0.454 Sum_probs=36.7
Q ss_pred ccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC
Q 001091 612 IKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (1159)
Q Consensus 612 ~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g 659 (1159)
..+++ ++++++| ++|+||+|||||||+++|.++.. .|.+ .+++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i-~~~~ 82 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFI-TASG 82 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEE-EEEH
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEE-EeeH
Confidence 46778 8999999 99999999999999999999885 5666 5543
No 166
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.11 E-value=8.6e-07 Score=91.72 Aligned_cols=109 Identities=23% Similarity=0.248 Sum_probs=66.2
Q ss_pred cC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcE---------EE---------ECCEEEEEecCCCCC----
Q 001091 615 TD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA---------IK---------VHGKKAYVPQSSWIQ---- 671 (1159)
Q Consensus 615 ~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i---------~~---------v~g~iayv~Q~pwi~---- 671 (1159)
++ ++++.+| +++|+||+|||||||+.+|.+.+.+..|.. +. ....|..+.|+|--.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 45 7888888 999999999999999999998776655531 01 112578888875210
Q ss_pred --CCcHHHHH---------hcCCCCChHHHHHHHHHhccchH-HHhccCCCCccccCCCCCCCHHHHHH
Q 001091 672 --TGTIRENI---------LFGKDMRQSFYEEVLEGCALNQD-IEMWADGDLSVVGERGINLSGGQKQR 728 (1159)
Q Consensus 672 --~gTIreNI---------lfG~~~d~~~y~~vl~ac~L~~d-l~~lp~Gd~T~IGe~G~~LSGGQKQR 728 (1159)
.-+|+..+ .-|.+...+.+.+.++..++.+| +..+++|+.+.+- .+|+++|+|
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~~~~~~qg~~~~l~----~~~~~~r~~ 161 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDGYNIVLQGDITKFI----KMSPLERRL 161 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTCTTEECTTCTTHHH----HSCHHHHHH
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCCCEEEEcccHHHHH----hCCHHHHHH
Confidence 01222111 11334456778888888777654 4444544443331 245555544
No 167
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.09 E-value=8.7e-07 Score=105.32 Aligned_cols=46 Identities=11% Similarity=0.134 Sum_probs=42.8
Q ss_pred ccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC
Q 001091 612 IKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (1159)
Q Consensus 612 ~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g 659 (1159)
..+++ ||++++ +.++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I-~~~g 64 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLL-NFRN 64 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTC-CCCC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEE-EECC
Confidence 35788 999999 9999999999999999999999999999998 7766
No 168
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.07 E-value=2.5e-06 Score=89.01 Aligned_cols=132 Identities=22% Similarity=0.227 Sum_probs=71.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCCccC-----------CCCcEEEECCE-EEE--E---ecCCCCCCCcHHHHHh------c
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIPR-----------ISGAAIKVHGK-KAY--V---PQSSWIQTGTIRENIL------F 681 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~~-----------~~G~i~~v~g~-iay--v---~Q~pwi~~gTIreNIl------f 681 (1159)
+++|+|++|||||||++.+.|...+ .+|++ .++|. +.. . .|+- +.+.+..... +
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i-~~~g~~~~~~i~Dt~g~~~--~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI-QVDGKTIKAQIWDTAGLER--YRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEE-EETTEEEEEEEEEECSCCS--SSCCCHHHHTTCCEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEE-EECCEEEEEEEEECCCCcc--hhhhhHHHhhcCCEEEE
Confidence 7899999999999999999998754 35666 77763 221 1 1221 1222222211 1
Q ss_pred C-CCCChHHHHHHHHHhccchHHHhccCCCC--ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH
Q 001091 682 G-KDMRQSFYEEVLEGCALNQDIEMWADGDL--SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTH 758 (1159)
Q Consensus 682 G-~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~--T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~ 758 (1159)
- ...+...++++.... +.+........ -.++.+ ..|..-.+++...||++..++++.++| +||+|....+.
T Consensus 108 v~d~~~~~s~~~~~~~~---~~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~ 181 (191)
T 1oix_A 108 VYDIAKHLTYENVERWL---KELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEA 181 (191)
T ss_dssp EEETTCHHHHHTHHHHH---HHHHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHH---HHHHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHH
Confidence 0 111222222211100 01111000000 112222 112222234578899999999999999 99999999888
Q ss_pred HHHHHHh
Q 001091 759 LFKQCLM 765 (1159)
Q Consensus 759 if~~~i~ 765 (1159)
+++.+.+
T Consensus 182 l~~~l~~ 188 (191)
T 1oix_A 182 AFQTILT 188 (191)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876544
No 169
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.07 E-value=4.9e-08 Score=111.73 Aligned_cols=67 Identities=19% Similarity=0.321 Sum_probs=53.2
Q ss_pred ccccC-CeEeeCC-------cEEEEEcCCCCChhHHHHHHhCCc----cCCCCcEEEE-------------CCEEEEEec
Q 001091 612 IKLTD-KMKIMKG-------SKVAVCGSVGSGKSSLLSSILGEI----PRISGAAIKV-------------HGKKAYVPQ 666 (1159)
Q Consensus 612 ~~L~~-nl~i~~G-------~~vaIvG~~GSGKSTLL~~llGe~----~~~~G~i~~v-------------~g~iayv~Q 666 (1159)
..+++ ++.+++| +.++++||+|+|||||+++|.|++ .+.+|.+ .. .+.+.|++|
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~-~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPV-LVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTT-CCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechH-hcCHHHHHHHHHHccCCCEEEEcc
Confidence 45666 7777765 789999999999999999999998 6777765 32 346899999
Q ss_pred CCCCCCCcHHHHHh
Q 001091 667 SSWIQTGTIRENIL 680 (1159)
Q Consensus 667 ~pwi~~gTIreNIl 680 (1159)
..-+.. ++.|++.
T Consensus 111 ~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 111 IHRLNK-AVEELLY 123 (334)
T ss_dssp GGGCCH-HHHHHHH
T ss_pred hhhcCH-HHHHHHH
Confidence 877765 7888775
No 170
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.03 E-value=9.7e-07 Score=93.46 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=42.6
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcC
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFG 682 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG 682 (1159)
++++|++++|+|++||||||+.+.|.+.++ .+.+++|++.++++ +|+..+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------TEEEEEGGGGBCCG---GGSCBC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------CcEEEeCCccccCH---hHhhcc
Confidence 467899999999999999999999999874 25799999998876 677554
No 171
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.03 E-value=8.9e-07 Score=95.54 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=22.8
Q ss_pred cccC-CeEeeCCcEEEEEcCCCCChhHHHHHHh-CCc
Q 001091 613 KLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSIL-GEI 647 (1159)
Q Consensus 613 ~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~ll-Ge~ 647 (1159)
..++ ||++++|++++|+||+|||||||++.|. |.+
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4556 9999999999999999999999999999 998
No 172
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.02 E-value=8.8e-07 Score=109.45 Aligned_cols=145 Identities=15% Similarity=0.152 Sum_probs=86.0
Q ss_pred cccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEEC--------CEEEEEecCC-------------
Q 001091 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--------GKKAYVPQSS------------- 668 (1159)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~--------g~iayv~Q~p------------- 668 (1159)
..++++ ++.+++|+.++|+||+|||||||+++|.|.+++..+..+.+. ..++|+||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~~~~ 126 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREKAK 126 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHHhhc
Confidence 346677 889999999999999999999999999999998874332553 2577887653
Q ss_pred ---------CCC-CCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 001091 669 ---------WIQ-TGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738 (1159)
Q Consensus 669 ---------wi~-~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~ 738 (1159)
|.+ ..++++|++.+..-... ..++.. -......+- |.-..-......+|+|++||+..++....+
T Consensus 127 ~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~--~~~v~~--~~~~~~~L~-G~~~~~~~~~g~~~~g~~~~i~~g~~~~a~ 201 (604)
T 3k1j_A 127 SQESVKSSNMRLKSTVLVPKLLVDNCGRTK--APFIDA--TGAHAGALL-GDVRHDPFQSGGLGTPAHERVEPGMIHRAH 201 (604)
T ss_dssp HHTCC-----------CCCEEEECCTTCSS--CCEEEC--TTCCHHHHH-CEECCCCC----CCCCGGGGEECCHHHHTT
T ss_pred cchhhhhhcccccccccccceeeccccCCC--CCEEEc--CCCCHHhcC-ceEEechhhcCCccccccccccCceeeecC
Confidence 221 22333444332110000 000000 000000000 000000122235999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHH
Q 001091 739 SDVYIFDDPFSAVDAHTGTHLFK 761 (1159)
Q Consensus 739 a~I~LLDDp~SALD~~t~~~if~ 761 (1159)
+.+++|||+-. +++.+...+.+
T Consensus 202 ~gvL~LDEi~~-l~~~~q~~Ll~ 223 (604)
T 3k1j_A 202 KGVLFIDEIAT-LSLKMQQSLLT 223 (604)
T ss_dssp TSEEEETTGGG-SCHHHHHHHHH
T ss_pred CCEEEEechhh-CCHHHHHHHHH
Confidence 99999999887 78887665543
No 173
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.02 E-value=2.7e-08 Score=115.26 Aligned_cols=128 Identities=15% Similarity=0.153 Sum_probs=81.2
Q ss_pred ccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEEC----C---EEEEEecCCCCCCCcHHHHHhcCC
Q 001091 612 IKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH----G---KKAYVPQSSWIQTGTIRENILFGK 683 (1159)
Q Consensus 612 ~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~----g---~iayv~Q~pwi~~gTIreNIlfG~ 683 (1159)
..+++ ++.+++|+.++|+||+|||||||+++|.|+. +|.++.+. + .+++++|...+ +.|++.+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~~~~~~~~~~lg~~~q~~~~----l~dd~~~~~ 229 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVNLPLDRLNFELGVAIDQFLV----VFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCSSCTTTHHHHHGGGTTCSCE----EETTCCCST
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEeccchhHHHHHHHhcchhHH----HHHHHHHHH
Confidence 56888 9999999999999999999999999999964 67662222 2 35666766543 334444333
Q ss_pred C----CChHHH-------HHHHHH---hccch---H-H-HhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEE-
Q 001091 684 D----MRQSFY-------EEVLEG---CALNQ---D-I-EMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYI- 743 (1159)
Q Consensus 684 ~----~d~~~y-------~~vl~a---c~L~~---d-l-~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~L- 743 (1159)
+ ..+..| .+.+.. ..+.. | + ..++.| .+.++-..+++|.+||+..+.+++.+||+++
T Consensus 230 ~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg---~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliy 306 (377)
T 1svm_A 230 GESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPG---IVTMNEYSVPKTLQARFVKQIDFRPKDYLKHC 306 (377)
T ss_dssp TTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCE---EEEECSCCCCHHHHTTEEEEEECCCCHHHHHH
T ss_pred HHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCc---ccChhHHhhcHHHHHHHhhhhccCCCCCeEEE
Confidence 2 101011 122110 00000 0 0 012222 2344556789999999999988999999888
Q ss_pred EeCCCC
Q 001091 744 FDDPFS 749 (1159)
Q Consensus 744 LDDp~S 749 (1159)
||+|+.
T Consensus 307 Ld~~~~ 312 (377)
T 1svm_A 307 LERSEF 312 (377)
T ss_dssp HHTCTH
T ss_pred EeCCHH
Confidence 998875
No 174
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.99 E-value=9.3e-06 Score=96.75 Aligned_cols=113 Identities=23% Similarity=0.330 Sum_probs=72.6
Q ss_pred cccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHH
Q 001091 613 KLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYE 691 (1159)
Q Consensus 613 ~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~ 691 (1159)
.+++ ++.+++| +.++||+|+|||||++++.++... .. -+++- .++.
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~---~f-------~~is~----------------~~~~----- 86 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV---PF-------FHISG----------------SDFV----- 86 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC---CE-------EEEEG----------------GGTT-----
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC---Ce-------eeCCH----------------HHHH-----
Confidence 3455 6777888 889999999999999999997631 11 11110 0000
Q ss_pred HHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCC----------CCCCHHHHHHHHH
Q 001091 692 EVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF----------SAVDAHTGTHLFK 761 (1159)
Q Consensus 692 ~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~----------SALD~~t~~~if~ 761 (1159)
+. .+| .|++++|-.+++|....|.|+++||+- ++.|....+ .++
T Consensus 87 ------------~~-------~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~-~l~ 140 (476)
T 2ce7_A 87 ------------EL-------FVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQ-TLN 140 (476)
T ss_dssp ------------TC-------CTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHH-HHH
T ss_pred ------------HH-------Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHH-HHH
Confidence 00 112 278999999999999999999999993 355554432 334
Q ss_pred HHHh---hh--cCCcEEEEEccCccccc
Q 001091 762 QCLM---GL--LSQKTVLYTTHQLEFLD 784 (1159)
Q Consensus 762 ~~i~---g~--l~~kTvIlVTH~l~~l~ 784 (1159)
+.+. +. ..+..+|.+||+.+.++
T Consensus 141 ~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 141 QLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 4442 22 23568889999987653
No 175
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.94 E-value=6.4e-07 Score=98.25 Aligned_cols=80 Identities=15% Similarity=0.051 Sum_probs=57.3
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHh---CCccCCCCcEEE--------ECC--------------EEEEEec------CCC
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSIL---GEIPRISGAAIK--------VHG--------------KKAYVPQ------SSW 669 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~ll---Ge~~~~~G~i~~--------v~g--------------~iayv~Q------~pw 669 (1159)
++|+.++|+||+||||||+++.|. |...+++|.+ . .+| .+++++| ..+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i-~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAI-YRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVI 103 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHH-HHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCce-ehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEE
Confidence 689999999999999999999999 9999988887 4 222 3677774 456
Q ss_pred CCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHHhcc
Q 001091 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWA 707 (1159)
Q Consensus 670 i~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~~lp 707 (1159)
+.+.++.+||.. +...+.....+..+.+....
T Consensus 104 l~~~~v~~~i~~------~~v~~~~s~~~~~~~vr~~l 135 (252)
T 4e22_A 104 LEGEDVSNEIRT------ETVGNTASQAAAFPRVREAL 135 (252)
T ss_dssp ETTEECTTGGGS------HHHHHHHHHHTTSHHHHHHH
T ss_pred ECCeehhHHHHH------HHHHHHHHHhcccHHHHHHH
Confidence 777888888752 33344444444455444433
No 176
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.90 E-value=1.3e-05 Score=92.64 Aligned_cols=40 Identities=43% Similarity=0.518 Sum_probs=31.9
Q ss_pred ccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhC--CccCCCCcE
Q 001091 612 IKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILG--EIPRISGAA 654 (1159)
Q Consensus 612 ~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llG--e~~~~~G~i 654 (1159)
..|++ ++++| .++|||++|||||||+++|.| ..+..+|.+
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v 67 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence 45777 78888 899999999999999999999 567777765
No 177
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.89 E-value=1.2e-06 Score=90.86 Aligned_cols=33 Identities=12% Similarity=0.322 Sum_probs=28.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCccC-CCCcE
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIPR-ISGAA 654 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~~-~~G~i 654 (1159)
+|++++|+||+|||||||++.|++.+++ ..|.+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i 37 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPI 37 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEee
Confidence 6999999999999999999999998863 44544
No 178
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.89 E-value=1.6e-05 Score=90.53 Aligned_cols=99 Identities=16% Similarity=0.228 Sum_probs=69.5
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHH-HHHHHHh
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFY-EEVLEGC 697 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y-~~vl~ac 697 (1159)
-+++|+++.|.|++|+|||||+.-+...... .| +.++|++= ++..+.. .+.+.+
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g------~~Vl~fSl-----------------Ems~~ql~~Rlls~- 96 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DD------RGVAVFSL-----------------EMSAEQLALRALSD- 96 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TT------CEEEEEES-----------------SSCHHHHHHHHHHH-
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------CeEEEEeC-----------------CCCHHHHHHHHHHH-
Confidence 4789999999999999999999988877654 23 23566552 3444433 333222
Q ss_pred ccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 001091 698 ALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752 (1159)
Q Consensus 698 ~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD 752 (1159)
...-|++.+-.| +||+++++|++.|...+.++++|+.|+|...+|
T Consensus 97 ~~~v~~~~l~~g----------~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 97 LTSINMHDLESG----------RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp HHCCCHHHHHHT----------CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred hhCCCHHHHhcC----------CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 112233333322 699999999999999999999999999865544
No 179
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.82 E-value=2.2e-06 Score=90.17 Aligned_cols=74 Identities=16% Similarity=0.383 Sum_probs=52.6
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc-------------CCCCcEEEECCE----------EEEEecCCCCCCC
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-------------RISGAAIKVHGK----------KAYVPQSSWIQTG 673 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~-------------~~~G~i~~v~g~----------iayv~Q~pwi~~g 673 (1159)
|+...+|++++|+||+|||||||++.|+++++ |..|++ +|. -..+.|+..++.+
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~---~G~~y~fvs~~~f~~~i~~~~fle~~ 89 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEE---DGKEYHFISTEEMTRNISANEFLEFG 89 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCC---TTSSCEECCHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCee---ccccceeccHHHhhhhhhhhhhhhhh
Confidence 66777999999999999999999999999886 444432 331 0234678889999
Q ss_pred cHHHHHhcCCCCChHHHHHHHHH
Q 001091 674 TIRENILFGKDMRQSFYEEVLEG 696 (1159)
Q Consensus 674 TIreNIlfG~~~d~~~y~~vl~a 696 (1159)
++.+| .+|.+ .+..++++++
T Consensus 90 ~~~~n-~YGt~--~~~v~~~l~~ 109 (197)
T 3ney_A 90 SYQGN-MFGTK--FETVHQIHKQ 109 (197)
T ss_dssp EETTE-EEEEE--HHHHHHHHHT
T ss_pred hhhce-ecccc--hhhHHHHHhc
Confidence 99999 58865 3445555554
No 180
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.82 E-value=5.5e-06 Score=104.90 Aligned_cols=142 Identities=15% Similarity=0.106 Sum_probs=83.7
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhCCccCCC--CcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHh
Q 001091 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS--GAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGC 697 (1159)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~--G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac 697 (1159)
+..|+.++|+||+||||||++..++++..+.. |.. +.++ | |. |+- -.+.++++.+..
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~------ilvl-~-P~------r~L-------a~q~~~~l~~~~ 164 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQ------VACT-Q-PR------RVA-------AMSVAQRVAEEM 164 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCE------EEEE-E-SC------HHH-------HHHHHHHHHHHT
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCce------EEec-C-ch------HHH-------HHHHHHHHHHHh
Confidence 45789999999999999999999988765544 321 2222 1 10 000 001112222111
Q ss_pred ccch--HHH-hccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHHhhhc-CCcE
Q 001091 698 ALNQ--DIE-MWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS-AVDAHTGTHLFKQCLMGLL-SQKT 772 (1159)
Q Consensus 698 ~L~~--dl~-~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~S-ALD~~t~~~if~~~i~g~l-~~kT 772 (1159)
+..- .+. .....+.+.-+.+-.-+|+|+.+|..++++..++.+++++|||.. ++|.+....++++.. ... ..++
T Consensus 165 ~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~-~~~~~~~i 243 (773)
T 2xau_A 165 DVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVV-KRRPDLKI 243 (773)
T ss_dssp TCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHH-HHCTTCEE
T ss_pred CCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHH-HhCCCceE
Confidence 1100 000 000000000112334579999999999999999999999999997 899876655555543 333 3467
Q ss_pred EEE-EccCcccc
Q 001091 773 VLY-TTHQLEFL 783 (1159)
Q Consensus 773 vIl-VTH~l~~l 783 (1159)
+++ +||..+.+
T Consensus 244 Il~SAT~~~~~l 255 (773)
T 2xau_A 244 IIMSATLDAEKF 255 (773)
T ss_dssp EEEESCSCCHHH
T ss_pred EEEeccccHHHH
Confidence 777 59987644
No 181
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.80 E-value=1.3e-05 Score=83.87 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=30.0
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 001091 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLM 765 (1159)
Q Consensus 729 IaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~ 765 (1159)
...||++..++++.++| +||+|...-+.+++.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45699999999999999 999999988888876544
No 182
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.80 E-value=3.7e-05 Score=88.64 Aligned_cols=123 Identities=20% Similarity=0.191 Sum_probs=74.4
Q ss_pred cEEEEEcCCCCChhHHHHHHhCCccCCCCcE-EEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchH
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAA-IKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQD 702 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i-~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~d 702 (1159)
-.++++|++|+|||||++.+.|......+.- .+.+-.++.++++.. . ..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--------------~------------~~---- 217 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYF--------------R------------YQ---- 217 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTE--------------E------------EE----
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCc--------------e------------EE----
Confidence 4799999999999999999998753211100 000111233332210 0 00
Q ss_pred HHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEe-CCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcc
Q 001091 703 IEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFD-DPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781 (1159)
Q Consensus 703 l~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLD-Dp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~ 781 (1159)
+-..|+-.+ .....+|+|++|++. |.+...++-++++| ++.+++|.+...+++++. .....++.+|+|.+..+
T Consensus 218 l~Dt~G~~~----~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i-~~~~~~~piilV~NK~D 291 (357)
T 2e87_A 218 IIDTPGLLD----RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEV-HGEFKDLPFLVVINKID 291 (357)
T ss_dssp EEECTTTSS----SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHH-HHHTTTSCEEEEECCTT
T ss_pred EEeCCCccc----cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHH-HHhcCCCCEEEEEECcc
Confidence 001121111 123468999999887 66656777788999 999999988877777654 33334788888885544
Q ss_pred c
Q 001091 782 F 782 (1159)
Q Consensus 782 ~ 782 (1159)
.
T Consensus 292 l 292 (357)
T 2e87_A 292 V 292 (357)
T ss_dssp T
T ss_pred c
Confidence 3
No 183
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.76 E-value=3.1e-06 Score=101.29 Aligned_cols=152 Identities=11% Similarity=0.094 Sum_probs=82.1
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhC--CccCCCCcE--EEECCEE---EEEecCCCCCCCcHHHHHhc-----C--
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILG--EIPRISGAA--IKVHGKK---AYVPQSSWIQTGTIRENILF-----G-- 682 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llG--e~~~~~G~i--~~v~g~i---ayv~Q~pwi~~gTIreNIlf-----G-- 682 (1159)
.+++.+|..+.|.|++||||||++++|+. .+....|.+ +.++.+- +...+-|++.. ++-+|... .
T Consensus 161 ~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~-~Vvtd~~~a~~~L~~~ 239 (512)
T 2ius_A 161 VADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLT-EVVTDMKDAANALRWC 239 (512)
T ss_dssp EEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSS-SCBCSHHHHHHHHHHH
T ss_pred EEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccc-eeecCHHHHHHHHHHH
Confidence 57788899999999999999999999886 445555665 1223221 00011133321 11111100 0
Q ss_pred -CCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHH----------HHHHHHccCCC-EEEEeCCCCC
Q 001091 683 -KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI----------QLARAVYSNSD-VYIFDDPFSA 750 (1159)
Q Consensus 683 -~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRI----------aLARAly~~a~-I~LLDDp~SA 750 (1159)
.++ ++|| +.++..++. ++... +..+ ...+||||+||. ++||++-..|. ++++||+.+.
T Consensus 240 ~~Em-erR~-~ll~~~Gv~-~i~~y----n~~~---~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~l 309 (512)
T 2ius_A 240 VNEM-ERRY-KLMSALGVR-NLAGY----NEKI---AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADL 309 (512)
T ss_dssp HHHH-HHHH-HHHHHTTCS-SHHHH----HHHH---HHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHH
T ss_pred HHHH-HHHH-HHHHHcCCc-cHHHH----HHHH---HHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHH
Confidence 000 1222 222222221 11110 0001 124688888753 36777778898 7889999988
Q ss_pred CCHHHHHHHHHHHHhhh-----cCCcEEEEEccCcc
Q 001091 751 VDAHTGTHLFKQCLMGL-----LSQKTVLYTTHQLE 781 (1159)
Q Consensus 751 LD~~t~~~if~~~i~g~-----l~~kTvIlVTH~l~ 781 (1159)
+|... +.+ ++.+..+ ..|-++|++||+++
T Consensus 310 l~~~~-~~~-~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 310 MMTVG-KKV-EELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHH-HHH-HHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred Hhhhh-HHH-HHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 88432 222 3333222 23789999999987
No 184
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.70 E-value=2.5e-05 Score=90.15 Aligned_cols=132 Identities=17% Similarity=0.193 Sum_probs=72.1
Q ss_pred EEEEEcCCCCChhHHHHHHhCCcc-----------CCCCcEEEECCEE-------EEEecCCCC----CCCcHH-----H
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIP-----------RISGAAIKVHGKK-------AYVPQSSWI----QTGTIR-----E 677 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~-----------~~~G~i~~v~g~i-------ayv~Q~pwi----~~gTIr-----e 677 (1159)
.++|+|++|+|||||++.|.|... +..|.+ .++|.- |++.|.|.- |..|.. |
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i-~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD 259 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAI-PINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSD 259 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEE-EETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEE-EECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCC
Confidence 499999999999999999999875 455666 777642 333332211 111111 2
Q ss_pred HHhcCCCC-ChH-HHHHHHHHhccchHHHhc--cCCCCccccCCCCCCCHHHHHHHHHH----HHH-ccCCCEEEEeCCC
Q 001091 678 NILFGKDM-RQS-FYEEVLEGCALNQDIEMW--ADGDLSVVGERGINLSGGQKQRIQLA----RAV-YSNSDVYIFDDPF 748 (1159)
Q Consensus 678 NIlfG~~~-d~~-~y~~vl~ac~L~~dl~~l--p~Gd~T~IGe~G~~LSGGQKQRIaLA----RAl-y~~a~I~LLDDp~ 748 (1159)
++++--+. ++. ...+-++.. .+.++.+ ++----.|+.+--.+|+|++||+.++ |++ ..++++ +|+
T Consensus 260 ~il~VvD~s~~~~~~~~~~~~~--~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~ 333 (364)
T 2qtf_A 260 ALILVIDSTFSENLLIETLQSS--FEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPI 333 (364)
T ss_dssp EEEEEEETTSCHHHHHHHHHHH--HHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EEC
T ss_pred EEEEEEECCCCcchHHHHHHHH--HHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEE
Confidence 23332111 111 011111110 1112221 11111234566666888899998887 776 444454 799
Q ss_pred CCCCHHHHHHHHHHH
Q 001091 749 SAVDAHTGTHLFKQC 763 (1159)
Q Consensus 749 SALD~~t~~~if~~~ 763 (1159)
||+|...-..+++..
T Consensus 334 SA~~g~gi~~L~~~I 348 (364)
T 2qtf_A 334 SALKRTNLELLRDKI 348 (364)
T ss_dssp BTTTTBSHHHHHHHH
T ss_pred ECCCCcCHHHHHHHH
Confidence 999998877777653
No 185
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.68 E-value=1.4e-06 Score=98.70 Aligned_cols=121 Identities=13% Similarity=0.120 Sum_probs=72.8
Q ss_pred cccC-CeEeeCCc------EEEEEcCCCCChhHHHHHHhCCccC--CCCcEEEECCEEEEEecCCCCCCCcHHHHH----
Q 001091 613 KLTD-KMKIMKGS------KVAVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHGKKAYVPQSSWIQTGTIRENI---- 679 (1159)
Q Consensus 613 ~L~~-nl~i~~G~------~vaIvG~~GSGKSTLL~~llGe~~~--~~G~i~~v~g~iayv~Q~pwi~~gTIreNI---- 679 (1159)
.|++ +..+.+++ +++|+||+|||||||+++|.|.+.. .+|. +++++|+.+..+...++..
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~-------v~~i~~D~f~~~~~~l~~~~~~~ 147 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN-------VEVITTDGFLYSNAKLEKQGLMK 147 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC-------EEEEEGGGGBCCHHHHHHTTCGG
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe-------EEEEeecccccchhhhhhHHHHh
Confidence 3444 44555554 8999999999999999999998874 3444 5788998876655544432
Q ss_pred hcCC--CCChHHHHHHHHHhccchHHHhccCCCC-ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 001091 680 LFGK--DMRQSFYEEVLEGCALNQDIEMWADGDL-SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA 753 (1159)
Q Consensus 680 lfG~--~~d~~~y~~vl~ac~L~~dl~~lp~Gd~-T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~ 753 (1159)
.+|. .+|.+...+++ +.+..|.. ..+- ..|-+..+|+.-+......+||+|+|-+..-.|.
T Consensus 148 ~~g~P~~~D~~~l~~~L---------~~L~~g~~~v~~P----~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 148 RKGFPESYDMPSLLRVL---------NAIKSGQRNVRIP----VYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp GTTSGGGBCHHHHHHHH---------HHHHTTCSSEEEE----EEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hccCcccccHHHHHHHH---------Hhhhccccccccc----hhhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 1333 35555554444 44444441 1110 1122222333222344568999999999876665
No 186
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.66 E-value=1.2e-05 Score=100.08 Aligned_cols=118 Identities=15% Similarity=0.086 Sum_probs=71.9
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC--CCCcEEEECC-------------EEEEEecCCCCCCCcHHHHHhc
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILF 681 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~--~~G~i~~v~g-------------~iayv~Q~pwi~~gTIreNIlf 681 (1159)
++++++|..++|+|++|+|||||++.|++...+ ..|+| .+| .+++.+|.+.++..+++.||.-
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V--~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD 80 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV--EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD 80 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG--GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee--cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe
Confidence 356788999999999999999999999976554 34543 111 2455555555555555555542
Q ss_pred --CCCCChHHHHHHHHHhccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHH--ccCCCEEEEeCCCCCCCHHHHH
Q 001091 682 --GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV--YSNSDVYIFDDPFSAVDAHTGT 757 (1159)
Q Consensus 682 --G~~~d~~~y~~vl~ac~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAl--y~~a~I~LLDDp~SALD~~t~~ 757 (1159)
|.. .-.....+. ..|..++++| |++++|+++.+
T Consensus 81 TpG~~------------------------------------------~f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 81 APGYG------------------------------------------DFVGEIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp CCCSG------------------------------------------GGHHHHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred CCCcc------------------------------------------chHHHHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 211 000111111 2355566777 99999988864
Q ss_pred HHHHHHHhhhcCCcEEEEEccCcccc
Q 001091 758 HLFKQCLMGLLSQKTVLYTTHQLEFL 783 (1159)
Q Consensus 758 ~if~~~i~g~l~~kTvIlVTH~l~~l 783 (1159)
. ++.+.. .+.++|++.|.++..
T Consensus 118 ~-~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 118 A-WTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp H-HHHHHH---TTCCEEEEEECGGGC
T ss_pred H-HHHHHH---ccCCEEEEecCCchh
Confidence 3 343321 467888888888754
No 187
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.63 E-value=3.1e-05 Score=81.62 Aligned_cols=125 Identities=18% Similarity=0.298 Sum_probs=68.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHH
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIE 704 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~ 704 (1159)
.++|+|++||||||+.+.|.+ + |.. .+++ + .+...+. .+ ..+.+.++.+.-
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-l----g~~-~id~-------d------~~~~~~~--~~-~~~~~~~i~~~~------- 54 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-L----GVP-LVDA-------D------VVAREVV--AK-DSPLLSKIVEHF------- 54 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-T----TCC-EEEH-------H------HHHHHTT--CS-SCHHHHHHHHHH-------
T ss_pred EEEEECCCCCCHHHHHHHHHH-C----CCc-ccch-------H------HHHHHHc--cC-ChHHHHHHHHHh-------
Confidence 689999999999999999988 2 544 3332 0 0000110 00 011222222211
Q ss_pred hccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCccc--
Q 001091 705 MWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF-- 782 (1159)
Q Consensus 705 ~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~-- 782 (1159)
|+. .-.++|+.+|..+++.++.+|+....+ .+.+|+.+.+.+. +.+.. .++.++|+-+|.+..
T Consensus 55 ----------g~~-~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~-~~~~~-~~~~~vv~~~~~l~e~~ 119 (206)
T 1jjv_A 55 ----------GAQ-ILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMK-QKLAE-QTAPYTLFVVPLLIENK 119 (206)
T ss_dssp ----------CTT-CC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHH-HHHHT-CCSSEEEEECTTTTTTT
T ss_pred ----------CHH-HhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHH-HHHHh-cCCCEEEEEechhhhcC
Confidence 221 224789999999999999887643222 2345555544432 22322 246688888887643
Q ss_pred -ccccCEEEEEe
Q 001091 783 -LDAADLVLVMK 793 (1159)
Q Consensus 783 -l~~aD~Iivl~ 793 (1159)
.+.+|.+++++
T Consensus 120 ~~~~~d~vi~l~ 131 (206)
T 1jjv_A 120 LTALCDRILVVD 131 (206)
T ss_dssp CGGGCSEEEEEE
T ss_pred cHhhCCEEEEEE
Confidence 46799999986
No 188
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.61 E-value=0.00039 Score=79.70 Aligned_cols=35 Identities=29% Similarity=0.479 Sum_probs=31.9
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcE
Q 001091 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1159)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i 654 (1159)
+++|+++.|.||+|||||||+..+.++..+..|.+
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 78999999999999999999999999988766655
No 189
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.61 E-value=7e-06 Score=89.76 Aligned_cols=51 Identities=16% Similarity=0.275 Sum_probs=34.5
Q ss_pred cEEEeee-EEEeCCcccccCCCcccccC-CeEeeC---CcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 590 AIDIEAG-EYAWDAREENFKKPTIKLTD-KMKIMK---GSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 590 ~I~~~~~-sf~w~~~~~~~~~~~~~L~~-nl~i~~---G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++++|+ +|+|+. ..++|++ |+++++ |+.++|+|++||||||+.+.|.+.+
T Consensus 17 ~l~~~~~~~~~~~~-------~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE-------EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC-------cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 2578999 999999 9999999999999999999998765
No 190
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.58 E-value=2.6e-05 Score=81.97 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=29.3
Q ss_pred eEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCC
Q 001091 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1159)
Q Consensus 618 l~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G 652 (1159)
+++++|++++|+||+||||||+++.|.+.+.|..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999866544
No 191
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.55 E-value=0.00011 Score=83.11 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=68.0
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHH
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEG 696 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~a 696 (1159)
.--+++|+++.|.|++|+|||||+..+....-. .| ..+.|++=+ +..+...+=+.+
T Consensus 62 lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------~~vl~~slE-----------------~s~~~l~~R~~~ 117 (315)
T 3bh0_A 62 TYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------DVVNLHSLE-----------------MGKKENIKRLIV 117 (315)
T ss_dssp HSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------CEEEEEESS-----------------SCHHHHHHHHHH
T ss_pred cCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------CeEEEEECC-----------------CCHHHHHHHHHH
Confidence 334889999999999999999999888765432 22 245665533 333332222222
Q ss_pred hccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 001091 697 CALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752 (1159)
Q Consensus 697 c~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD 752 (1159)
....-+++.+..|. ..||+++++|++-|...+.++++++.|+|...+|
T Consensus 118 ~~~~i~~~~l~~~~--------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~ 165 (315)
T 3bh0_A 118 TAGSINAQKIKAAR--------RDFASEDWGKLSMAIGEISNSNINIFDKAGQSVN 165 (315)
T ss_dssp HHTTCCHHHHHSCH--------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHH
T ss_pred HHcCCCHHHHhcCC--------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHH
Confidence 21222333333332 1389999999999999999999999998864433
No 192
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.54 E-value=2.6e-05 Score=82.03 Aligned_cols=39 Identities=13% Similarity=0.232 Sum_probs=25.0
Q ss_pred CCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 609 KPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 609 ~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
+..+.++| ||++++|+.++|+|++||||||+.+.|.+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35688999 9999999999999999999999999999876
No 193
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.50 E-value=3.3e-05 Score=81.21 Aligned_cols=41 Identities=29% Similarity=0.354 Sum_probs=35.2
Q ss_pred cccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcE
Q 001091 613 KLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1159)
Q Consensus 613 ~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i 654 (1159)
.... ++..++|++++|+|++||||||+.++|.+.+. ..|.+
T Consensus 14 ~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~ 55 (200)
T 3uie_A 14 KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKL 55 (200)
T ss_dssp HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCC
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCce
Confidence 3344 67778999999999999999999999999987 67765
No 194
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.44 E-value=4.8e-06 Score=89.63 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=33.7
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCE
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK 660 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~ 660 (1159)
++++++ ++++|+||+|||||||+++|.|.++|.+|.| .++|.
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i-~~~g~ 63 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLL-HFRNT 63 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeE-EECCE
Confidence 355666 8999999999999999999999999999998 77663
No 195
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.43 E-value=3.1e-06 Score=101.39 Aligned_cols=43 Identities=28% Similarity=0.454 Sum_probs=36.0
Q ss_pred ccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC
Q 001091 612 IKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (1159)
Q Consensus 612 ~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g 659 (1159)
..+++ ++++++| +.++||+|+|||||+++|.++.. .|.+ .+++
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i-~i~g 97 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFI-TASG 97 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEE-EEEG
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEE-EEeh
Confidence 45777 8999999 99999999999999999999975 4555 5554
No 196
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.33 E-value=0.00046 Score=78.30 Aligned_cols=108 Identities=18% Similarity=0.222 Sum_probs=66.3
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhCCccCC--CCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHH
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI--SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEG 696 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~--~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~a 696 (1159)
-+++|+++.|.||+|||||||+..+....... .|. ..+++.|++-+. .++.++..+..+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg---~~~~vlyi~~e~---------------~~~~~~l~~~~~~ 164 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGG---LSGKAVYIDTEG---------------TFRWERIENMAKA 164 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC---CSCEEEEEESSS---------------CCCHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCC---CCCeEEEEECCC---------------CCCHHHHHHHHHH
Confidence 48899999999999999999999998765322 121 134567776542 1334444444444
Q ss_pred hccchH--HHhccCCCCccccCCCCCCCH-HHHHHHHHHHHHc---cCCCEEEEeCCCCCCCH
Q 001091 697 CALNQD--IEMWADGDLSVVGERGINLSG-GQKQRIQLARAVY---SNSDVYIFDDPFSAVDA 753 (1159)
Q Consensus 697 c~L~~d--l~~lp~Gd~T~IGe~G~~LSG-GQKQRIaLARAly---~~a~I~LLDDp~SALD~ 753 (1159)
.+.+.+ ++.+ .+.. ..++ -|.+.+..++++. .+++++++|..++-.++
T Consensus 165 ~g~~~~~~~~~l------~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 165 LGLDIDNVMNNI------YYIR---AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp TTCCHHHHHHTE------EEEE---CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred hCCCHHHHhccE------EEEe---CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 443321 1111 0110 1122 3456777788777 57999999998876543
No 197
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.27 E-value=3.3e-07 Score=101.13 Aligned_cols=113 Identities=10% Similarity=0.014 Sum_probs=86.1
Q ss_pred CCCCCCCcHHHHHhcC-------CCCChHHHHHHHHHhcc-----------------chH------------HHhccCCC
Q 001091 667 SSWIQTGTIRENILFG-------KDMRQSFYEEVLEGCAL-----------------NQD------------IEMWADGD 710 (1159)
Q Consensus 667 ~pwi~~gTIreNIlfG-------~~~d~~~y~~vl~ac~L-----------------~~d------------l~~lp~Gd 710 (1159)
++.-|..+|+.|+... +|.|++..+++++++.- ++- -..++++.
T Consensus 83 ~~~~l~~~la~aL~~~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~~~~~l~~~l 162 (261)
T 2eyu_A 83 DTKSFADALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFIL 162 (261)
T ss_dssp TBSCHHHHHHHHHHHCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHHHHHHHHHHE
T ss_pred CHHHHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccchHHHHHHHHh
Confidence 4445566777776654 33477776666665421 000 12467789
Q ss_pred CccccCCCCCCCHHHHHHHHHHHHHccCCCE--EEEeCCCCCCCHHHH--------HHHHHHHHhhhcCCcEEEEEccCc
Q 001091 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDV--YIFDDPFSAVDAHTG--------THLFKQCLMGLLSQKTVLYTTHQL 780 (1159)
Q Consensus 711 ~T~IGe~G~~LSGGQKQRIaLARAly~~a~I--~LLDDp~SALD~~t~--------~~if~~~i~g~l~~kTvIlVTH~l 780 (1159)
++.|++++..+||| ||+++||+++.+|+| +|+||++|++|...+ +.+.++.+..+.+|+|.+.++||+
T Consensus 163 ~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~ 240 (261)
T 2eyu_A 163 QGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEA 240 (261)
T ss_dssp EEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHHHH
T ss_pred hEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHHHH
Confidence 99999999999999 899999999999999 999999999998742 245677777888999999999987
Q ss_pred c
Q 001091 781 E 781 (1159)
Q Consensus 781 ~ 781 (1159)
.
T Consensus 241 ~ 241 (261)
T 2eyu_A 241 S 241 (261)
T ss_dssp C
T ss_pred h
Confidence 5
No 198
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.26 E-value=0.00099 Score=74.14 Aligned_cols=116 Identities=18% Similarity=0.223 Sum_probs=71.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccch
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQ 701 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~ 701 (1159)
++.-+.+.||+|+||||+++++.++.. ...+.+++ +.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~---~~~~~i~~--------~~l------------------------------- 90 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS---ATFLNISA--------ASL------------------------------- 90 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT---CEEEEEES--------TTT-------------------------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC---CCeEEeeH--------HHH-------------------------------
Confidence 567899999999999999999999763 12211111 000
Q ss_pred HHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH------HHHHHHH---HhhhcC---
Q 001091 702 DIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTG------THLFKQC---LMGLLS--- 769 (1159)
Q Consensus 702 dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~------~~if~~~---i~g~l~--- 769 (1159)
. ...+| +++++.|-.+++|...+|.++++||+-+-.+.... ..+.... +.+...
T Consensus 91 -----~---~~~~~------~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 91 -----T---SKYVG------DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp -----S---SSSCS------CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred -----h---hcccc------hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 00112 36888888889988899999999999877654321 1222222 233221
Q ss_pred --CcEEEEEccCcccc-----cccCEEEEEe
Q 001091 770 --QKTVLYTTHQLEFL-----DAADLVLVMK 793 (1159)
Q Consensus 770 --~kTvIlVTH~l~~l-----~~aD~Iivl~ 793 (1159)
+..+|.+||+.+.+ ..+|+++.+.
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~ 187 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRRFTKRVYVS 187 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHHCCEEEECC
T ss_pred CCcEEEEeecCChhhCCHHHHhhCCeEEEeC
Confidence 23566678887544 3467665553
No 199
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.25 E-value=0.0011 Score=76.53 Aligned_cols=123 Identities=14% Similarity=0.160 Sum_probs=67.5
Q ss_pred CCc--EEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhcc
Q 001091 622 KGS--KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL 699 (1159)
Q Consensus 622 ~G~--~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L 699 (1159)
+|. .+.|+||+|+|||||++.+.+++.+..+. .+.|+.-.+. .+ ..+.++++++..+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~------~~~~i~~~~~---~~-----------~~~~~~~l~~~l~~ 100 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTA------RFVYINGFIY---RN-----------FTAIIGEIARSLNI 100 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCC------EEEEEETTTC---CS-----------HHHHHHHHHHHTTC
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCe------eEEEEeCccC---CC-----------HHHHHHHHHHHhCc
Confidence 456 89999999999999999999998765321 2334432211 01 01233333333211
Q ss_pred chHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHH--ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhc----CCcEE
Q 001091 700 NQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV--YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL----SQKTV 773 (1159)
Q Consensus 700 ~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAl--y~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l----~~kTv 773 (1159)
...+.| .+-++..+. +.+.+ ..++.++++||+-.. |......+.+ .+...- .+.++
T Consensus 101 -------------~~~~~~--~~~~~~~~~-l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~-~~~~~~~~~~~~~~i 162 (389)
T 1fnn_A 101 -------------PFPRRG--LSRDEFLAL-LVEHLRERDLYMFLVLDDAFNL-APDILSTFIR-LGQEADKLGAFRIAL 162 (389)
T ss_dssp -------------CCCSSC--CCHHHHHHH-HHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHH-HTTCHHHHSSCCEEE
T ss_pred -------------cCCCCC--CCHHHHHHH-HHHHHhhcCCeEEEEEECcccc-chHHHHHHHH-HHHhCCCCCcCCEEE
Confidence 011222 222222111 11122 245779999999876 7766554432 332222 36688
Q ss_pred EEEccCccc
Q 001091 774 LYTTHQLEF 782 (1159)
Q Consensus 774 IlVTH~l~~ 782 (1159)
|++||+.+.
T Consensus 163 I~~~~~~~~ 171 (389)
T 1fnn_A 163 VIVGHNDAV 171 (389)
T ss_dssp EEEESSTHH
T ss_pred EEEECCchH
Confidence 888998753
No 200
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.24 E-value=0.0012 Score=75.39 Aligned_cols=108 Identities=14% Similarity=0.220 Sum_probs=64.5
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhCCc--cCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHH
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEG 696 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~llGe~--~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~a 696 (1159)
-+++|+++.|.||+|||||||+..+.... ++..|. ..+.+.|++-+. .++.++..+..+.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg---~~~~vlyi~~E~---------------~~~~~~l~~~~~~ 179 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY---PGGKIIFIDTEN---------------TFRPDRLRDIADR 179 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB---CCCEEEEEESSS---------------CCCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC---CCCeEEEEECCC---------------CCCHHHHHHHHHH
Confidence 48899999999999999999999998863 332221 134567876543 1334444444444
Q ss_pred hccchH--HHhccCCCCccccCCCCCCCH-HHHHHHHHHHHHc----cCCCEEEEeCCCCCCCH
Q 001091 697 CALNQD--IEMWADGDLSVVGERGINLSG-GQKQRIQLARAVY----SNSDVYIFDDPFSAVDA 753 (1159)
Q Consensus 697 c~L~~d--l~~lp~Gd~T~IGe~G~~LSG-GQKQRIaLARAly----~~a~I~LLDDp~SALD~ 753 (1159)
.+++.+ ++.+- .... .++ -+.+.+..++.+. .+++++++|.+++-.++
T Consensus 180 ~g~~~~~~l~~l~-----~~~~----~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 180 FNVDHDAVLDNVL-----YARA----YTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp TTCCHHHHHHTEE-----EEEC----CSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred cCCCHHHHHhcee-----Eeec----CCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 433221 11110 0000 122 2345565666665 57999999998876644
No 201
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.24 E-value=0.00011 Score=77.13 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=29.3
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g 659 (1159)
-++.++|++++|+|++|||||||+++|.|.+ |.+ .+++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~-~i~~ 60 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLE-FAEA 60 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCE-EEEG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCe-EEcc
Confidence 4566789999999999999999999999987 766 5544
No 202
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.14 E-value=0.00019 Score=75.96 Aligned_cols=29 Identities=17% Similarity=0.413 Sum_probs=27.4
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCccC
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~~~ 649 (1159)
++|++++|+||+|||||||++.|.+.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999876
No 203
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.08 E-value=0.00012 Score=83.64 Aligned_cols=54 Identities=20% Similarity=0.221 Sum_probs=46.4
Q ss_pred ccEEEeeeEEEeCCcccccCCCccccc--------------C-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccC
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLT--------------D-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~--------------~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~ 649 (1159)
+.+.|+|++|.|+.+ ...|+ | .+.+.+|+.++|+||+|+|||||++.|.+....
T Consensus 132 ~ri~Fe~ltp~yP~e-------r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 132 NKILFENLTPLHANS-------RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp TSCCTTTSCEESCCS-------BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred CCceeccccccCCCC-------ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 468899999999865 34455 7 899999999999999999999999999987643
No 204
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.07 E-value=0.0022 Score=69.09 Aligned_cols=29 Identities=38% Similarity=0.549 Sum_probs=24.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCccCCCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIPRISGA 653 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~~~~G~ 653 (1159)
.++|+|++|+|||||++.|+|.-...+|.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 68999999999999999999987766653
No 205
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.04 E-value=0.00021 Score=75.16 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=32.6
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcE
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i 654 (1159)
..++|++++|+|++||||||+++.|.+.+++..|.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v 53 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISV 53 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeE
Confidence 356899999999999999999999999998877876
No 206
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.99 E-value=0.00095 Score=75.54 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=34.5
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcE
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i 654 (1159)
++++++|+.++|+|++|+||||++..|.+.+.+..|+|
T Consensus 99 ~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kV 136 (320)
T 1zu4_A 99 DFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKV 136 (320)
T ss_dssp CCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 56677899999999999999999999999999887777
No 207
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.98 E-value=0.00033 Score=75.29 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=31.6
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEEC
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~ 658 (1159)
+.+.++|++++|.|++||||||+++.|.|. .|+| .+.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v-~~~ 50 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDI-CLL 50 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTE-EEE
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCe-EEE
Confidence 445679999999999999999999999997 6777 444
No 208
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.90 E-value=0.0026 Score=74.60 Aligned_cols=33 Identities=15% Similarity=0.084 Sum_probs=29.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCccCCCCcE
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i 654 (1159)
++..++++|++||||||++..|.+.+.+..++|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kV 128 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKV 128 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 578999999999999999999999998766665
No 209
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.86 E-value=0.0014 Score=77.59 Aligned_cols=68 Identities=19% Similarity=0.253 Sum_probs=39.9
Q ss_pred Hcc-CCCEEEEeCCCCCCCH-HHHHHHHHHHHhhhc-CCcEEEEEccCcc-cccc-cCEEEE-EeCCeEEEecCh
Q 001091 735 VYS-NSDVYIFDDPFSAVDA-HTGTHLFKQCLMGLL-SQKTVLYTTHQLE-FLDA-ADLVLV-MKDGKIEQSGKY 803 (1159)
Q Consensus 735 ly~-~a~I~LLDDp~SALD~-~t~~~if~~~i~g~l-~~kTvIlVTH~l~-~l~~-aD~Iiv-l~~G~I~e~Gt~ 803 (1159)
-|+ +++++++||+-.-.+. .+.+.++ +.++.+. .|+++|++||+.. .+.. .+++.- ++.|.+++.+++
T Consensus 190 ~~~~~~~vL~IDEi~~l~~~~~~q~~l~-~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 190 KYRKKVDILLIDDVQFLIGKTGVQTELF-HTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp HHTTTCSEEEEECGGGGSSCHHHHHHHH-HHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred HhcCCCCEEEEeCcccccCChHHHHHHH-HHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 355 8999999999877764 3444444 4455433 5788999999843 3322 122221 344555555444
No 210
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.83 E-value=0.00032 Score=85.35 Aligned_cols=41 Identities=27% Similarity=0.357 Sum_probs=35.0
Q ss_pred cccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcE
Q 001091 613 KLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1159)
Q Consensus 613 ~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i 654 (1159)
.+++ ++++ +|+.++++||+|+|||||+++|.+++.+..|.+
T Consensus 98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i 139 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRI 139 (543)
T ss_dssp HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEE
Confidence 4555 6666 799999999999999999999999998776666
No 211
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.80 E-value=0.001 Score=74.58 Aligned_cols=47 Identities=26% Similarity=0.275 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCcc-CCCCcE-EEECCEEEEEecCC
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIP-RISGAA-IKVHGKKAYVPQSS 668 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~-~~~G~i-~~v~g~iayv~Q~p 668 (1159)
++..++|+|++|+|||||+++|+|.-. ..++.. .+.+...+++.|+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~ 55 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA 55 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC
Confidence 345899999999999999999999742 122111 02233456776653
No 212
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.79 E-value=0.0018 Score=74.18 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=27.7
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCccCCCC
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G 652 (1159)
+++..+.|+||+|+|||||++.+.+++++..|
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~ 74 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFL 74 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999998876543
No 213
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.74 E-value=0.00055 Score=69.91 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=28.0
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEEC
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~ 658 (1159)
++|++++|+|++||||||+++.|.+.+ |.+ .++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~-~i~ 38 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAA-FLD 38 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCE-EEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcE-EEe
Confidence 469999999999999999999998865 655 444
No 214
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.70 E-value=0.0015 Score=68.19 Aligned_cols=31 Identities=29% Similarity=0.465 Sum_probs=26.2
Q ss_pred cEEEEEcCCCCChhHHHHHHhCCccCCCCcE
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i 654 (1159)
.-+.|+||+|+|||+|++++..+.....+.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~ 85 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSS 85 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 6799999999999999999999886544444
No 215
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.66 E-value=0.00045 Score=83.76 Aligned_cols=42 Identities=24% Similarity=0.397 Sum_probs=35.8
Q ss_pred eEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCC-cEEEECC
Q 001091 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG-AAIKVHG 659 (1159)
Q Consensus 618 l~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G-~i~~v~g 659 (1159)
..+++|+.++|+|++|||||||+++|.|.+.+.+| ++..++|
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 35789999999999999999999999999999886 5622554
No 216
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.66 E-value=0.0057 Score=72.43 Aligned_cols=98 Identities=16% Similarity=0.160 Sum_probs=63.8
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHH-HHHHHHh
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFY-EEVLEGC 697 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y-~~vl~ac 697 (1159)
-+++|+++.|.|++|+|||||...+........|. .+.|++=+ ++.+.. ++.+ +.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~------~vl~~slE-----------------~~~~~l~~R~~-~~ 251 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGV------GVGIYSLE-----------------MPAAQLTLRMM-CS 251 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCC------CEEEEESS-----------------SCHHHHHHHHH-HH
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC------eEEEEECC-----------------CCHHHHHHHHH-HH
Confidence 37899999999999999999999988876543332 34555433 333322 2222 11
Q ss_pred ccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 001091 698 ALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSA 750 (1159)
Q Consensus 698 ~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SA 750 (1159)
...-|.+.+. .| +|+..+++|+.-|-..+.+.++++.|.|...
T Consensus 252 ~~~i~~~~l~---------~g-~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s 294 (444)
T 2q6t_A 252 EARIDMNRVR---------LG-QLTDRDFSRLVDVASRLSEAPIYIDDTPDLT 294 (444)
T ss_dssp HTTCCTTTCC---------GG-GCCHHHHHHHHHHHHHHHTSCEEEECCTTCB
T ss_pred HcCCCHHHHh---------CC-CCCHHHHHHHHHHHHHHhcCCEEEECCCCCC
Confidence 1111122221 12 6999999999988877888899998876433
No 217
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.62 E-value=0.0023 Score=72.21 Aligned_cols=32 Identities=28% Similarity=0.333 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCccCCCCc
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGA 653 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~ 653 (1159)
++.-+.|.||+|+|||||++++.+++......
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~ 67 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYR 67 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCE
Confidence 35679999999999999999999988655333
No 218
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.54 E-value=0.0071 Score=70.85 Aligned_cols=139 Identities=12% Similarity=0.023 Sum_probs=75.0
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCC-----CcHHH--HHh-c--CCCCC
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQT-----GTIRE--NIL-F--GKDMR 686 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~-----gTIre--NIl-f--G~~~d 686 (1159)
+++ +|+.++++|++||||||++..|.+.+.+..|+| .+ +..++.=.. .+.++ |+- + +...|
T Consensus 94 ~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~V-ll------vd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~ 164 (425)
T 2ffh_A 94 VLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRP-LL------VAADTQRPAAREQLRLLGEKVGVPVLEVMDGES 164 (425)
T ss_dssp CCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCE-EE------EECCSSCHHHHHHHHHHHHHHTCCEEECCTTCC
T ss_pred cCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE-EE------eeccccCchhHHHHHHhcccCCccEEecCCCCC
Confidence 455 789999999999999999999999999887777 32 222321000 11222 221 1 11123
Q ss_pred hHHHHHHHHHhccchHHHhc-cCCCCccccCCCCCC---CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 001091 687 QSFYEEVLEGCALNQDIEMW-ADGDLSVVGERGINL---SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQ 762 (1159)
Q Consensus 687 ~~~y~~vl~ac~L~~dl~~l-p~Gd~T~IGe~G~~L---SGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~ 762 (1159)
+... + .+-++.+ .++++..|=+-.-.+ .+...+...++|++..++-++++| ++++.|+.....-
T Consensus 165 p~~i---~-----~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~tgq~av~~a~~--- 232 (425)
T 2ffh_A 165 PESI---R-----RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD-AMTGQEALSVARA--- 232 (425)
T ss_dssp HHHH---H-----HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GGGTTHHHHHHHH---
T ss_pred HHHH---H-----HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEe-ccchHHHHHHHHH---
Confidence 3222 1 1223333 255555543332222 234566777888886555566666 5666554422211
Q ss_pred HHhhhcCCcEEEEEcc
Q 001091 763 CLMGLLSQKTVLYTTH 778 (1159)
Q Consensus 763 ~i~g~l~~kTvIlVTH 778 (1159)
++.- -+-+.|++|+
T Consensus 233 -f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 233 -FDEK-VGVTGLVLTK 246 (425)
T ss_dssp -HHHH-TCCCEEEEES
T ss_pred -HHhc-CCceEEEEeC
Confidence 2211 2346667765
No 219
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.48 E-value=0.0029 Score=75.27 Aligned_cols=118 Identities=25% Similarity=0.316 Sum_probs=60.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccchHHH
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIE 704 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~dl~ 704 (1159)
+++|+|++|+|||||++.|+|.- .+.+.+.| |+-|+.+..--+.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~-------------~~~v~~~~----g~t~~~~~~~~~~------------------- 68 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGER-------------ISIVEDTP----GVTRDRIYSSAEW------------------- 68 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEE-------------EC---------------CEEEECTT-------------------
T ss_pred EEEEECCCCCcHHHHHHHHhCCC-------------CcccCCCC----CcceeEEEEEEEE-------------------
Confidence 79999999999999999998842 12233333 2222211100000
Q ss_pred hccCCCCccccCCCCC--CCHHHHHHHHHHHHHccCCCEEEEeC-CCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcc
Q 001091 705 MWADGDLSVVGERGIN--LSGGQKQRIQLARAVYSNSDVYIFDD-PFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781 (1159)
Q Consensus 705 ~lp~Gd~T~IGe~G~~--LSGGQKQRIaLARAly~~a~I~LLDD-p~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~ 781 (1159)
.+..-+.+.-.|.. -.+.|++-...++..++++|++|+.- ...++.... ..+.+ .++. .++.+|+|.|..+
T Consensus 69 --~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~-~l~~--~~~pvilV~NK~D 142 (456)
T 4dcu_A 69 --LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAK-ILYR--TKKPVVLAVNKLD 142 (456)
T ss_dssp --CSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHH-HHTT--CCSCEEEEEECC-
T ss_pred --CCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHH-HHHH--cCCCEEEEEECcc
Confidence 01111222222322 12348888899999999999777653 333444433 33332 2322 4789999999887
Q ss_pred ccc
Q 001091 782 FLD 784 (1159)
Q Consensus 782 ~l~ 784 (1159)
...
T Consensus 143 ~~~ 145 (456)
T 4dcu_A 143 NTE 145 (456)
T ss_dssp ---
T ss_pred chh
Confidence 643
No 220
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.47 E-value=0.0044 Score=78.87 Aligned_cols=32 Identities=16% Similarity=0.325 Sum_probs=29.5
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
++.+++|+.+.++||+|||||||+++|.|+++
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 46789999999999999999999999999874
No 221
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.47 E-value=0.003 Score=67.20 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=26.5
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCccCC
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRI 650 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~~~~ 650 (1159)
+++..+.|+||+|+|||||++++..+....
T Consensus 50 ~~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 50 DGVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp CSCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 368899999999999999999999887654
No 222
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.47 E-value=0.0091 Score=68.45 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=32.9
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecC
Q 001091 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (1159)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~ 667 (1159)
+++|+++.|.|++|||||||...+..+.....+. +.|++-+
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~-------vlyid~E 100 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT-------CAFIDAE 100 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCC-------EEEEESS
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCe-------EEEEeCC
Confidence 7899999999999999999999998877554333 4666544
No 223
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.47 E-value=0.00097 Score=67.73 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
.|+.++|+|++||||||+++.|.+.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999999998764
No 224
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.45 E-value=0.0097 Score=64.56 Aligned_cols=60 Identities=8% Similarity=0.032 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHHc---cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---hhcCCcEEEEEccCccc
Q 001091 722 SGGQKQRIQLARAVY---SNSDVYIFDDPFSAVDAHTGTHLFKQCLM---GLLSQKTVLYTTHQLEF 782 (1159)
Q Consensus 722 SGGQKQRIaLARAly---~~a~I~LLDDp~SALD~~t~~~if~~~i~---g~l~~kTvIlVTH~l~~ 782 (1159)
+.|++.+-.+.|+++ .++|++|+--..+..+... ..+++.... .-..++++|++||..+.
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 86 SKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQD-QQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHH-HHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred CcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHH-HHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 345666777888875 8899777654444554433 334333221 11236899999998764
No 225
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.42 E-value=0.0014 Score=75.11 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=30.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCccCCCCcE
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i 654 (1159)
+|..++|+|++|||||||++.|+|...+.+|++
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v 105 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKL 105 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeE
Confidence 577999999999999999999999998887776
No 226
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.39 E-value=0.0053 Score=72.62 Aligned_cols=97 Identities=12% Similarity=0.097 Sum_probs=62.7
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHH-HHHHHHh
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFY-EEVLEGC 697 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y-~~vl~ac 697 (1159)
-+++|+++.|.|++|+|||||..-+....-.. | .++.|++=+ +..+.. ++.+ +.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g------~~vl~fSlE-----------------ms~~ql~~R~~-~~ 247 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-D------DVVNLHSLE-----------------MGKKENIKRLI-VT 247 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-T------CEEEEECSS-----------------SCTTHHHHHHH-HH
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-C------CEEEEEECC-----------------CCHHHHHHHHH-HH
Confidence 37899999999999999999998887655332 3 245666533 333222 2222 22
Q ss_pred ccchHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCC
Q 001091 698 ALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF 748 (1159)
Q Consensus 698 ~L~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~ 748 (1159)
...-|+..+..|. ..|+..+.+|+.-|...+.+.++++.|.|-
T Consensus 248 ~~~i~~~~l~~g~--------~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~ 290 (444)
T 3bgw_A 248 AGSINAQKIKAAR--------RDFASEDWGKLSMAIGEISNSNINIFDKAG 290 (444)
T ss_dssp HSCCCHHHHHHTG--------GGTCCSCHHHHHHHHHHHHTSCEEEECCSS
T ss_pred HcCCCHHHHhccc--------CCCCHHHHHHHHHHHHHHhcCCEEEECCCC
Confidence 2222333333332 137888899998888888888999988774
No 227
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.32 E-value=0.0018 Score=64.75 Aligned_cols=27 Identities=44% Similarity=0.620 Sum_probs=23.0
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHh
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSIL 644 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~ll 644 (1159)
.+++.+| +.+|+||+||||||++.+|.
T Consensus 18 ~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 18 VVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred EEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4556554 89999999999999999986
No 228
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.30 E-value=0.0066 Score=67.91 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=27.6
Q ss_pred eEeeCCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 618 l~i~~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
+.++++.-+.+.||+|+|||+|+++|.++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3467889999999999999999999999874
No 229
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.26 E-value=0.0013 Score=67.53 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=27.4
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCccCCCC
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G 652 (1159)
++|++++++|++||||||+.+.|.+.+++ .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 47999999999999999999999998766 56
No 230
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.17 E-value=0.0014 Score=74.95 Aligned_cols=43 Identities=21% Similarity=0.139 Sum_probs=37.6
Q ss_pred ccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcE
Q 001091 612 IKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1159)
Q Consensus 612 ~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i 654 (1159)
..+++ ++.+++|..++|+|++|+|||||++.|+|.+.+..|++
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v 87 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKV 87 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 34566 77788999999999999999999999999998877766
No 231
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.16 E-value=0.0021 Score=69.04 Aligned_cols=41 Identities=15% Similarity=0.302 Sum_probs=30.4
Q ss_pred cccC-CeEee---CCcEEEEEcCCCCChhHHHHHHhCCccCCCCcE
Q 001091 613 KLTD-KMKIM---KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1159)
Q Consensus 613 ~L~~-nl~i~---~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i 654 (1159)
-|.+ |+.+. +|.+++|.|++||||||+++.|...+.. .+.+
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~ 56 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV 56 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc
Confidence 3455 55554 8999999999999999999999999887 5555
No 232
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.11 E-value=0.0091 Score=66.57 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCCccCCCCcE
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i 654 (1159)
..-+.++||+|+||||+.++|.+...+..|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 45789999999999999999999998777765
No 233
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.07 E-value=0.013 Score=64.40 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=24.8
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 620 IMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
++++.-+.|.||+|+|||+|++++.+++
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4566779999999999999999999876
No 234
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.01 E-value=0.0014 Score=69.18 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=32.4
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCC
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G 652 (1159)
.+.+++|.+++|+|++||||||+.+.|.+.+++..|
T Consensus 19 ~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 19 ELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp HHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred cccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 456789999999999999999999999999886677
No 235
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.99 E-value=0.0065 Score=65.27 Aligned_cols=123 Identities=15% Similarity=0.165 Sum_probs=64.4
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCC-CCCcHHHHHh--cCCCCChHHHHHHHHH
Q 001091 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWI-QTGTIRENIL--FGKDMRQSFYEEVLEG 696 (1159)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi-~~gTIreNIl--fG~~~d~~~y~~vl~a 696 (1159)
+.+|+.++|+||+||||||++..++.+.....|. ...+..+.|.|-. ...++.+|+. ++.+.. ..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~--------~~ 140 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----AAECNIVVTQPRRISAVSVAERVAFERGEEPG--------KS 140 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----GGGCEEEEEESSHHHHHHHHHHHHHTTTCCTT--------SS
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----CCceEEEEeccchHHHHHHHHHHHHHhccccC--------ce
Confidence 4579999999999999999888776554332332 1123445555532 2224555553 121110 00
Q ss_pred hccchHHHhccCCCCccccCCC---CCCCHHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHH
Q 001091 697 CALNQDIEMWADGDLSVVGERG---INLSGGQKQRIQLARAVYSNSDVYIFDDPFS-AVDAHTGTHLFKQC 763 (1159)
Q Consensus 697 c~L~~dl~~lp~Gd~T~IGe~G---~~LSGGQKQRIaLARAly~~a~I~LLDDp~S-ALD~~t~~~if~~~ 763 (1159)
++...+.+ ......+ .-.+.|+-.+.. ++-.++-+++++||+=. ++|........++.
T Consensus 141 ~g~~~~~~-------~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i 202 (235)
T 3llm_A 141 CGYSVRFE-------SILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDV 202 (235)
T ss_dssp EEEEETTE-------EECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred EEEeechh-------hccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHH
Confidence 01000000 0111011 112456666653 44689999999999965 56666543344443
No 236
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.93 E-value=0.0026 Score=66.84 Aligned_cols=30 Identities=33% Similarity=0.747 Sum_probs=26.4
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
...+|.+++|+||+||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346899999999999999999999998774
No 237
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.90 E-value=0.0054 Score=68.84 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=25.6
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhCC
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~llGe 646 (1159)
-+++|..+.|.||.|+|||||...+..+
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5788999999999999999999999865
No 238
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.90 E-value=0.0037 Score=63.51 Aligned_cols=27 Identities=41% Similarity=0.629 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
++|.+++|+|++|+|||||++.+.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999999875
No 239
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.88 E-value=0.0026 Score=65.56 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=31.6
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcE
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i 654 (1159)
..++|.+++++|++||||||+.+.|.+.+.+..|.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 346899999999999999999999999988766665
No 240
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.76 E-value=0.0033 Score=70.67 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
+.-+.+.||+|+|||+|+.+|..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999998876
No 241
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.73 E-value=0.016 Score=65.37 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=25.5
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhCC
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~llGe 646 (1159)
-+++|+++.|.|++|||||||...+...
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988865
No 242
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.65 E-value=0.043 Score=61.88 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
+++.-+.+.||+|+|||+|.+++..+.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999999987
No 243
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.55 E-value=0.0033 Score=65.52 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=29.0
Q ss_pred cccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhC
Q 001091 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILG 645 (1159)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llG 645 (1159)
.+.+++ ++..+++ +++++|++|+|||||++.+.+
T Consensus 13 ~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 13 SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 356777 8887777 589999999999999999986
No 244
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.54 E-value=0.0059 Score=62.94 Aligned_cols=30 Identities=33% Similarity=0.554 Sum_probs=26.0
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCC
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe 646 (1159)
|++.++|..++|+|++||||||+.+.|...
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 4 SMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp --CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 677888999999999999999999999775
No 245
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.51 E-value=0.045 Score=62.90 Aligned_cols=41 Identities=22% Similarity=0.447 Sum_probs=32.8
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecC
Q 001091 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (1159)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~ 667 (1159)
+++|+++.|.|+.|||||||...+........+ ++.|++=+
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~-------~vlyi~~E 111 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGG-------TCAFIDAE 111 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC-------CEEEEESS
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCC-------eEEEEECC
Confidence 789999999999999999999988876654333 35677655
No 246
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.44 E-value=0.026 Score=59.45 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=22.7
Q ss_pred EEEEEcCCCCChhHHHHHHhCCccC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIPR 649 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~~ 649 (1159)
.+.|+||.|+|||||++.+..++..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 7899999999999999999987754
No 247
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.43 E-value=0.032 Score=63.90 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
++..-+.++||+|+|||+|++++..+.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345679999999999999999999875
No 248
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.37 E-value=0.013 Score=66.98 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=25.5
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCccC
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~~~ 649 (1159)
..+..+.|+||+|+|||||++.+..+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999988754
No 249
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.31 E-value=0.0081 Score=63.19 Aligned_cols=27 Identities=41% Similarity=0.544 Sum_probs=22.8
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHh
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSIL 644 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~ll 644 (1159)
++++.+ .+++|+||+||||||++.+|.
T Consensus 18 ~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 18 VVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 455555 499999999999999999985
No 250
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.22 E-value=0.0074 Score=69.90 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=24.9
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhCC
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~llGe 646 (1159)
.++.|..++|||++|+|||||+++|.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4567889999999999999999999997
No 251
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.17 E-value=0.01 Score=61.20 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=20.8
Q ss_pred cccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhC
Q 001091 613 KLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILG 645 (1159)
Q Consensus 613 ~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llG 645 (1159)
.+++ ++..++. +++++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 4566 7776666 789999999999999999997
No 252
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.16 E-value=0.0071 Score=62.13 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=25.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCCccCCC
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGEIPRIS 651 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe~~~~~ 651 (1159)
-..++|+|++|||||||++.|++++++..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g 34 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARG 34 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccC
Confidence 35799999999999999999999876543
No 253
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.14 E-value=0.045 Score=55.38 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChhHHHHHHhC
Q 001091 624 SKVAVCGSVGSGKSSLLSSILG 645 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llG 645 (1159)
.++.|+|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 254
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.12 E-value=0.013 Score=69.28 Aligned_cols=25 Identities=40% Similarity=0.558 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
-.++|+|++|+|||||++.|+|+..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~ 205 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKER 205 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcc
Confidence 3799999999999999999999853
No 255
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.07 E-value=0.01 Score=60.69 Aligned_cols=28 Identities=32% Similarity=0.561 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCCccCCCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~~~~G 652 (1159)
+++|+|++|+|||||++.+.|...+..+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~~~ 31 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSDLG 31 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC------
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccCC
Confidence 6899999999999999999997544333
No 256
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.88 E-value=0.016 Score=58.17 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
-+++|+|++|+|||||++.+.|...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe
Confidence 3689999999999999999999653
No 257
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.83 E-value=0.012 Score=59.84 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
.|.++.|+|++||||||+.+.|...++
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999988764
No 258
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.68 E-value=0.01 Score=62.01 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
..+++|+|++||||||+.+.|.+.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998765
No 259
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.66 E-value=0.014 Score=59.83 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.+|.+++++|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999997544
No 260
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.64 E-value=0.024 Score=57.79 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChhHHHHHHhCC
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe 646 (1159)
-+++++|++|+|||||++.+.|.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999985
No 261
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.56 E-value=0.014 Score=60.95 Aligned_cols=21 Identities=24% Similarity=0.569 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 001091 625 KVAVCGSVGSGKSSLLSSILG 645 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llG 645 (1159)
.++|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 262
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.54 E-value=0.013 Score=60.82 Aligned_cols=24 Identities=38% Similarity=0.797 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCcc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
.++|+||+|||||||++.|+.+.+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 478999999999999999998764
No 263
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.54 E-value=0.02 Score=63.57 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=28.5
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECC
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g 659 (1159)
++|.++.|+||+||||||+.+.|..+++ .|.+ .+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~-~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVI-VIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCE-EECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeE-EEec
Confidence 4678999999999999999999988764 2444 5543
No 264
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.43 E-value=0.015 Score=63.22 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=26.6
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
..++|.++.++|++||||||+.+.|.+.+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456788999999999999999999998764
No 265
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.33 E-value=0.015 Score=58.49 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
+++|+|++||||||+.+.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999997664
No 266
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.28 E-value=0.13 Score=57.08 Aligned_cols=28 Identities=21% Similarity=0.427 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCccC
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~~ 649 (1159)
++.-+.++||+|+|||++.+++..++..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3556899999999999999998887753
No 267
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.26 E-value=0.021 Score=58.74 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
++|.++.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 568899999999999999999997654
No 268
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.25 E-value=0.17 Score=54.46 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
+..-+.+.||+|+|||++++++..+.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34458899999999999999999876
No 269
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.19 E-value=0.023 Score=58.22 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
+|.+++|+|++||||||+.+.|...+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 477999999999999999999976553
No 270
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.19 E-value=0.016 Score=64.78 Aligned_cols=32 Identities=13% Similarity=0.105 Sum_probs=29.3
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCCccCCCCcE
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i 654 (1159)
|+.++++|++|+||||++..|.+.+.+..|++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v 129 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKV 129 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 89999999999999999999999998776665
No 271
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.13 E-value=0.024 Score=58.91 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.+|.+++|+|+.||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998876
No 272
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.11 E-value=0.13 Score=60.55 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
++..-+.+.||+|+|||+|.+++..+.
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 355678999999999999999999987
No 273
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=94.00 E-value=0.011 Score=71.40 Aligned_cols=30 Identities=27% Similarity=0.492 Sum_probs=26.9
Q ss_pred ccC-CeEeeCCcEEEEEcCCCCChhHHHHHHh
Q 001091 614 LTD-KMKIMKGSKVAVCGSVGSGKSSLLSSIL 644 (1159)
Q Consensus 614 L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~ll 644 (1159)
+++ ++++.+| +++|+|++|||||||+.+|.
T Consensus 51 ~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~ 81 (517)
T 4ad8_A 51 ITQLELELGGG-FCAFTGETGAGKSIIVDALG 81 (517)
T ss_dssp BSCEEEECCCS-EEEEEESHHHHHHHHTHHHH
T ss_pred eeeEEEecCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 456 7888899 99999999999999999993
No 274
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.93 E-value=0.092 Score=51.67 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=26.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCccCCCCcE
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i 654 (1159)
.+.-+.|.||+|+|||++.++|-.+.....+..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~ 55 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEF 55 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCC
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCE
Confidence 455689999999999999999988766544444
No 275
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.93 E-value=0.017 Score=62.76 Aligned_cols=30 Identities=43% Similarity=0.577 Sum_probs=24.3
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
+...++| +.++||+|+|||||+++|.++..
T Consensus 41 ~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 41 GGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp --CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 4445555 89999999999999999999874
No 276
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.92 E-value=0.16 Score=59.48 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=25.1
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
-+++-.=+.+.||+|||||+|.+++.++..
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 344555688999999999999999999874
No 277
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.89 E-value=0.027 Score=56.46 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=18.7
Q ss_pred cEEEEEcCCCCChhHHHHHH
Q 001091 624 SKVAVCGSVGSGKSSLLSSI 643 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~l 643 (1159)
.+++|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 278
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.78 E-value=0.03 Score=58.53 Aligned_cols=28 Identities=25% Similarity=0.233 Sum_probs=24.6
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
++|.+++|+|+.||||||+.+.|...+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999976553
No 279
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.78 E-value=0.085 Score=56.30 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=37.5
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccC-----------cccccccCEEEEEe
Q 001091 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQ-----------LEFLDAADLVLVMK 793 (1159)
Q Consensus 737 ~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~-----------l~~l~~aD~Iivl~ 793 (1159)
.+.|++++||.-=..| + ..+.+. +.. .|+.||+.-++ .+.++.||.|..|+
T Consensus 89 ~~~dvViIDEaQF~~~--v-~el~~~-l~~--~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD--I-VEFCEA-MAN--AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT--H-HHHHHH-HHH--TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh--H-HHHHHH-HHh--CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999988865 2 233332 222 68999999888 34578899999885
No 280
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.76 E-value=0.024 Score=60.87 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=24.3
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 620 IMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
-++|..++|+|++||||||+.+.|.+.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999999998754
No 281
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.76 E-value=0.022 Score=58.17 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++..+.|+|++||||||+.+.|...+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999988554
No 282
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.74 E-value=0.075 Score=59.42 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=29.6
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhCCccCC-CCcEEEECCEEEEEecC
Q 001091 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-SGAAIKVHGKKAYVPQS 667 (1159)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~-~G~i~~v~g~iayv~Q~ 667 (1159)
+++| ++.|.||.|||||||+.-++-+.... .| +++.|+.=+
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g------~~vlyId~E 67 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPD------AVCLFYDSE 67 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTT------CEEEEEESS
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCC------ceEEEEecc
Confidence 7899 99999999999999977666555432 12 345777643
No 283
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.70 E-value=0.031 Score=58.44 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=25.2
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
.++|.+++|+|+.||||||+.+.|...+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999987654
No 284
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.63 E-value=0.043 Score=54.50 Aligned_cols=22 Identities=45% Similarity=0.602 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe 646 (1159)
.++|+|+.|+|||||++.+++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999984
No 285
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.62 E-value=0.023 Score=61.04 Aligned_cols=26 Identities=35% Similarity=0.440 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
+...++|+||+||||||+.+.|...+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998654
No 286
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.62 E-value=0.13 Score=58.69 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
++.-+.+.||+|+|||+|.+++..+.
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 34458899999999999999999987
No 287
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.60 E-value=0.2 Score=51.74 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCcc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
.+.|+||.|+|||++++.+..++.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 389999999999999999988763
No 288
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.58 E-value=0.034 Score=56.82 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
++..++++|++||||||+.+.|...+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999997654
No 289
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.58 E-value=0.37 Score=56.48 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=30.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCC
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~p 668 (1159)
++..++++|++|+||||++..|...+.. .|. +++.+.-++
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~-~G~------kVllv~~D~ 138 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK-RGY------KVGVVCSDT 138 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT-TTC------CEEEEECCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH-CCC------eEEEEeCCC
Confidence 3568999999999999999999988865 342 245555454
No 290
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.57 E-value=0.034 Score=57.88 Aligned_cols=28 Identities=39% Similarity=0.342 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCccC
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~~ 649 (1159)
+|.+++|+|+.||||||+.+.|...+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5789999999999999999999877654
No 291
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.56 E-value=0.009 Score=62.67 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=23.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCccCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIPRI 650 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~~~ 650 (1159)
+++|+|++||||||+++.|...+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999988643
No 292
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.50 E-value=0.024 Score=65.40 Aligned_cols=64 Identities=22% Similarity=0.188 Sum_probs=45.9
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCcccccccCEEE
Q 001091 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVL 790 (1159)
Q Consensus 714 IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~SALD~~t~~~if~~~i~g~l~~kTvIlVTH~l~~l~~aD~Ii 790 (1159)
+|.....+ +.+|++|+..+||++++|||+ |.++.... ++....|.+++.++|..+....+|+++
T Consensus 191 ~g~~~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~~----l~~~~~g~~vi~t~H~~~~~~~~~rl~ 254 (372)
T 2ewv_A 191 VGEDTKSF------ADALRAALREDPDVIFVGEMR---DLETVETA----LRAAETGHLVFGTLHTNTAIDTIHRIV 254 (372)
T ss_dssp BTTTBSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHHH----HHHHTTTCEEEECCCCCSHHHHHHHHH
T ss_pred cCCCHHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHHH----HHHHhcCCEEEEEECcchHHHHHHHHH
Confidence 44444556 569999999999999999999 77664433 333446899999999866444455543
No 293
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.47 E-value=0.057 Score=61.82 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
++..+.|.||.|+|||||++.+..++.
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999998764
No 294
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.43 E-value=0.032 Score=56.87 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCChhHHHHHHhCCccC
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGEIPR 649 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe~~~ 649 (1159)
..++|+|++|||||||+..|++++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999998864
No 295
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.41 E-value=0.034 Score=55.08 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 296
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.41 E-value=0.035 Score=57.44 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCC
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe 646 (1159)
+..+++|+|++||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3458999999999999999999875
No 297
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.39 E-value=0.037 Score=54.91 Aligned_cols=24 Identities=38% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCcc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
+++++|+.|+|||||++.+.|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 689999999999999999998543
No 298
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.36 E-value=0.028 Score=61.22 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCChhHHHHHHhCCc
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
++++|+||+|||||||.+.|.+.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999998765
No 299
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.34 E-value=0.0013 Score=75.77 Aligned_cols=59 Identities=17% Similarity=0.064 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHHc-cCCCEEEEeC---CC------CCCCHHHHHHHHHHHHhhhcC--CcEEEEEccC
Q 001091 720 NLSGGQKQRIQLARAVY-SNSDVYIFDD---PF------SAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQ 779 (1159)
Q Consensus 720 ~LSGGQKQRIaLARAly-~~a~I~LLDD---p~------SALD~~t~~~if~~~i~g~l~--~kTvIlVTH~ 779 (1159)
.+|+|++||..++++.. .++++++||| |+ +++|+.....+. +.+..+++ ++|+++++|.
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~-~~l~~l~~~~~~~ililde~ 328 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQ-QLLKKLLDKYKVPYIEIESP 328 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHH-HHHHHHHHGGGCCCEEEECS
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHH-HHHHHHHHHcCCCEEEeCCC
Confidence 56788899999999875 5999999999 65 589998866554 45655554 8899999875
No 300
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.33 E-value=0.037 Score=56.92 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
++|.+++|+|+.||||||+.+.|...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999997654
No 301
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.28 E-value=0.041 Score=57.96 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhC
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILG 645 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llG 645 (1159)
++.+++|+|++||||||+.+.|.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999976
No 302
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.27 E-value=0.057 Score=57.52 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=23.5
Q ss_pred eCCcE-EEEEcCCCCChhHHHHHHhCCccCCCC
Q 001091 621 MKGSK-VAVCGSVGSGKSSLLSSILGEIPRISG 652 (1159)
Q Consensus 621 ~~G~~-vaIvG~~GSGKSTLL~~llGe~~~~~G 652 (1159)
++|++ +.+.|+.|+||||+.-.+...... .|
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~-~G 34 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLR-QG 34 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHHH-CC
Confidence 35665 788999999999997777766543 35
No 303
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.23 E-value=0.031 Score=57.81 Aligned_cols=24 Identities=38% Similarity=0.679 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCcc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
+++|+|++||||||+.+.|...+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999988653
No 304
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.21 E-value=0.19 Score=58.69 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=24.3
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
+++..=+.+.||+|+|||+|.+++.++..
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 44444589999999999999999999874
No 305
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.19 E-value=0.045 Score=54.74 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999999864
No 306
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.19 E-value=0.038 Score=54.37 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++++|+.|+|||||++.+++.-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 307
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.13 E-value=0.039 Score=54.45 Aligned_cols=22 Identities=45% Similarity=0.540 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe 646 (1159)
.++|+|+.|+|||||++.+++.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 308
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.13 E-value=0.043 Score=56.20 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
--.++|+|++|+|||||++.+++.-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999999863
No 309
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.13 E-value=0.052 Score=54.51 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
+.-.++|+|+.|+|||||++.+.+.-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999999854
No 310
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.11 E-value=0.062 Score=54.95 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe 646 (1159)
+++|+|+.|+|||||++.+++.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999877654
No 311
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.09 E-value=0.036 Score=56.37 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=18.5
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
+++.++.|+|+.||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999987554
No 312
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.09 E-value=0.042 Score=54.28 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe 646 (1159)
.++|+|+.|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999865
No 313
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.07 E-value=0.042 Score=54.58 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.+.+.-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999999865
No 314
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=93.07 E-value=0.057 Score=61.83 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCC
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe 646 (1159)
|..++|||.+|+|||||+++|.|.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 467999999999999999999984
No 315
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.06 E-value=0.046 Score=54.86 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.+++.-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999753
No 316
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.04 E-value=0.042 Score=54.06 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
+++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 317
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.02 E-value=0.49 Score=56.61 Aligned_cols=42 Identities=14% Similarity=0.052 Sum_probs=32.2
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEec
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQ 666 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q 666 (1159)
-+++|+++.|.|++|+|||||+.-++-..-...|. ++.|++=
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~------~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGK------KVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCC------CEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCC------cEEEEec
Confidence 37899999999999999999998887765443232 3566653
No 318
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.01 E-value=0.04 Score=54.72 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.+++.-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999999753
No 319
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.01 E-value=0.042 Score=56.20 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.-.++|+|+.|+|||||++.+.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999999865
No 320
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.99 E-value=0.044 Score=54.32 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.+++.-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998653
No 321
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.98 E-value=0.025 Score=71.95 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=29.3
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
++.+++|+.+.++||+|+|||||.++|.+++.
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 56778999999999999999999999999874
No 322
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.97 E-value=0.047 Score=55.65 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.++|.-
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 79999999999999999999874
No 323
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.97 E-value=0.045 Score=54.45 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.+++.-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999999653
No 324
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.96 E-value=0.12 Score=54.65 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
++|++..++|+.||||||.+--++-.+.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~ 53 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQ 53 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 5799999999999999998877766554
No 325
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.95 E-value=0.05 Score=54.12 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
+++|+|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998754
No 326
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.90 E-value=0.075 Score=60.05 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=21.7
Q ss_pred EEEEcCCCCChhHHHHHHhCCcc
Q 001091 626 VAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 626 vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
+.+.||+|+||||+++++.+++.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999875
No 327
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.87 E-value=0.046 Score=54.94 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.+++.-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999998754
No 328
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.85 E-value=0.046 Score=54.11 Aligned_cols=22 Identities=41% Similarity=0.517 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe 646 (1159)
.++|+|+.|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 329
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.84 E-value=0.19 Score=58.85 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=25.3
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
-+++-.-+.+.||+|||||+|.+++.++..
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 345555689999999999999999999864
No 330
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.83 E-value=0.015 Score=66.14 Aligned_cols=37 Identities=30% Similarity=0.322 Sum_probs=31.3
Q ss_pred ccccC-CeEeeCCcE--EEEEcCCCCChhHHHHHHhCCcc
Q 001091 612 IKLTD-KMKIMKGSK--VAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 612 ~~L~~-nl~i~~G~~--vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
.+++. ++.+++|+. ++++|++||||||+.++|.+.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 34556 677888988 99999999999999999998764
No 331
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.79 E-value=0.053 Score=55.53 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
++.+++|+|+.||||||+.+.|...+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999887544
No 332
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.75 E-value=0.049 Score=54.63 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.+++.-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998653
No 333
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.75 E-value=0.046 Score=63.36 Aligned_cols=34 Identities=21% Similarity=0.127 Sum_probs=29.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEE
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI 655 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~ 655 (1159)
.+.-++|+|++||||||+++.+++.+.+..+.++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~ 67 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVI 67 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 4567899999999999999999998887777773
No 334
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.75 E-value=0.041 Score=56.74 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=24.3
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 620 IMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.+++.+++|+|+.||||||+.+.|...+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999997654
No 335
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.73 E-value=0.048 Score=54.78 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe 646 (1159)
.++|+|+.|+|||||++.+++.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999976
No 336
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.66 E-value=0.051 Score=59.52 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCCcc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
.++++|++|||||||++.+.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999999754
No 337
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.64 E-value=0.051 Score=55.59 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCChhHHHHHHhCCc
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
=.++|+|+.|+|||||++.++|.-
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 369999999999999999999863
No 338
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=92.64 E-value=0.052 Score=59.63 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|++|+|||||+++|+|.-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998764
No 339
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.61 E-value=0.3 Score=66.79 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=32.9
Q ss_pred cccccC-C--eEeeCCcEEEEEcCCCCChhHHHHHHhCCccCC
Q 001091 611 TIKLTD-K--MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI 650 (1159)
Q Consensus 611 ~~~L~~-n--l~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~ 650 (1159)
.+.|.+ . .-+++|+.+.++||+|||||+|...++-+-...
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea~k~ 1108 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 1108 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 345555 3 469999999999999999999999999776654
No 340
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.53 E-value=0.36 Score=54.91 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCccC
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~~ 649 (1159)
+|.-+.+.||+|+|||++.+++..++..
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4678999999999999999999988763
No 341
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.53 E-value=0.061 Score=56.80 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
++|.+++|+|+.||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999997654
No 342
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.52 E-value=0.07 Score=54.14 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.+.+.-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999999864
No 343
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.51 E-value=0.054 Score=53.68 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe 646 (1159)
.++|+|+.|+|||||++.+++.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999964
No 344
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.42 E-value=0.26 Score=57.92 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=24.6
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
+++-.=+.+.||.|+|||+|.++|.++..
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 44455588999999999999999999874
No 345
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.41 E-value=0.056 Score=54.15 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe 646 (1159)
.++|+|+.|+|||||++.+++.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 346
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.39 E-value=0.059 Score=55.09 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCCcc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
+++|+|++||||||+.+.|...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987665
No 347
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.36 E-value=0.064 Score=58.10 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=21.7
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
++-.+++|+|++||||||+.+.|...+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 344579999999999999999886543
No 348
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.36 E-value=0.068 Score=55.52 Aligned_cols=27 Identities=19% Similarity=0.307 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++.+++|+|+.||||||+.+.|...+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999997654
No 349
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=92.36 E-value=0.056 Score=62.22 Aligned_cols=27 Identities=41% Similarity=0.685 Sum_probs=22.8
Q ss_pred CeEeeCCcEEEEEcCCCCChhHHHHHHh
Q 001091 617 KMKIMKGSKVAVCGSVGSGKSSLLSSIL 644 (1159)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLL~~ll 644 (1159)
.+++.+ .+++|+|++||||||++.||.
T Consensus 20 ~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 20 RIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred EEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 456655 499999999999999999874
No 350
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.33 E-value=0.053 Score=57.63 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++.+++|+|+.||||||+.+.|...+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998655
No 351
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.30 E-value=0.38 Score=65.87 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=30.1
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcE
Q 001091 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1159)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i 654 (1159)
+++|+.+.|+||+|+|||+|..++.-+.....+.+
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v 1458 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 1458 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 88999999999999999999999988776544443
No 352
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.30 E-value=0.06 Score=54.51 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.+++.-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999998653
No 353
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.29 E-value=0.074 Score=60.08 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=27.1
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEE
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~ 656 (1159)
+++.+++|+||+|||||||...|...+. |.|+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~---~eiIs 70 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP---LEVIN 70 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC---EEEEE
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC---CcEEc
Confidence 4667999999999999999999998763 55533
No 354
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.29 E-value=0.064 Score=54.57 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCC
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe 646 (1159)
.-+++|+|++|+|||||++.+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999986
No 355
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.26 E-value=0.061 Score=55.03 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|++|+|||||++.+.+.-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999743
No 356
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.21 E-value=0.29 Score=56.63 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=24.5
Q ss_pred eEeeCCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 618 l~i~~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
+..|+| +.+.||+|||||+|.+++.++..
T Consensus 179 i~~prG--vLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 179 IAQPKG--VILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCCCC--EEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCCCc--eEEeCCCCCCHHHHHHHHHHhhC
Confidence 444555 88999999999999999999864
No 357
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.20 E-value=0.061 Score=54.63 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe 646 (1159)
.++|+|+.|+|||||++.+++.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999964
No 358
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.20 E-value=0.047 Score=55.35 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|++||||||+.+.|...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998765
No 359
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.20 E-value=0.068 Score=53.62 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe 646 (1159)
.++|+|+.|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999975
No 360
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=92.19 E-value=0.068 Score=59.72 Aligned_cols=22 Identities=45% Similarity=0.677 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe 646 (1159)
.++|+|++|+|||||++.++|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999986
No 361
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.19 E-value=0.063 Score=59.88 Aligned_cols=23 Identities=48% Similarity=0.697 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||+++|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999974
No 362
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.15 E-value=0.063 Score=53.03 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe 646 (1159)
.++++|+.|+|||||++.+.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 363
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.15 E-value=0.06 Score=55.91 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
+..+++|+|+.||||||+.+.|...+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998654
No 364
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.14 E-value=0.069 Score=59.82 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
+|+|+|++|+|||||++.|+|.-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999863
No 365
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.12 E-value=0.06 Score=61.80 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=30.8
Q ss_pred ccEEEeeeEEEeCCcccccCCCcccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCC
Q 001091 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1159)
Q Consensus 589 ~~I~~~~~sf~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G 652 (1159)
+.|.++|.+..+.. ...+++ +++| +|+|++|+|||||++.|.|.-....|
T Consensus 16 ~~v~~~~l~~~~~~--------k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~ 66 (361)
T 2qag_A 16 GYVGFANLPNQVHR--------KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPER 66 (361)
T ss_dssp -----CCHHHHHHT--------HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----
T ss_pred ceEEeccchHHhCC--------eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 34677777665542 234555 5554 99999999999999999987554444
No 366
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.10 E-value=0.035 Score=62.93 Aligned_cols=42 Identities=21% Similarity=0.267 Sum_probs=34.4
Q ss_pred ccccC-CeEeeCCcE--EEEEcCCCCChhHHHHHHhCCccCCCCc
Q 001091 612 IKLTD-KMKIMKGSK--VAVCGSVGSGKSSLLSSILGEIPRISGA 653 (1159)
Q Consensus 612 ~~L~~-nl~i~~G~~--vaIvG~~GSGKSTLL~~llGe~~~~~G~ 653 (1159)
.+++. +..++.|+. +.++||+|+||||+++++.+++.+..+.
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 34555 667788888 9999999999999999999998765543
No 367
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.10 E-value=0.067 Score=53.56 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.+.+.-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998754
No 368
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.07 E-value=0.067 Score=53.74 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.+++.-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999998754
No 369
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.05 E-value=0.11 Score=54.23 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=28.4
Q ss_pred ccccCCeEeeCCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 612 IKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 612 ~~L~~nl~i~~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
..++.++--..|..++|+||+|||||||...|....
T Consensus 23 ~~lHa~~v~~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEEETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEEECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 345554444578999999999999999999998654
No 370
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.01 E-value=0.069 Score=53.71 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.+++.-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999999754
No 371
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.95 E-value=0.068 Score=54.12 Aligned_cols=23 Identities=39% Similarity=0.613 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.+.+.-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998653
No 372
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.95 E-value=0.075 Score=52.82 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCC
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe 646 (1159)
+.-.++|+|+.|+|||||++.+.+.
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3447999999999999999999763
No 373
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.93 E-value=0.071 Score=53.77 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe 646 (1159)
.++|+|+.|+|||||++.+++.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 6999999999999999999864
No 374
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=91.93 E-value=0.073 Score=58.80 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|++|+|||||+++|+|.-
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999975
No 375
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.92 E-value=0.075 Score=57.59 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChhHHHHHHhCCc
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
-.++|+|++|+|||||++.|+|.-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
No 376
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.91 E-value=0.098 Score=53.54 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.-+++|+|+.|+|||||++.+++.-
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999999843
No 377
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.91 E-value=0.075 Score=54.16 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.5
Q ss_pred EEEEEcCCCCChhHHHHHHhCCccC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIPR 649 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~~ 649 (1159)
+++|+|+.|+|||||++.+.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999999987654
No 378
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.91 E-value=0.33 Score=56.44 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=24.5
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
+++-.=+.+.||.|+|||+|.+++.++..
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 44445599999999999999999999874
No 379
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.90 E-value=0.069 Score=54.42 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++++|+.|+|||||++.+++.-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 69999999999999999998753
No 380
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.90 E-value=0.066 Score=54.07 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhC
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILG 645 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llG 645 (1159)
+.-.++|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 455899999999999999999985
No 381
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=91.87 E-value=0.076 Score=57.85 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++++|++|||||||++.+.|.-
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999874
No 382
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.85 E-value=0.076 Score=54.57 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCcc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
+++|.|+.||||||+.+.|...++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987664
No 383
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.84 E-value=0.27 Score=66.40 Aligned_cols=125 Identities=21% Similarity=0.262 Sum_probs=71.5
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhcc
Q 001091 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL 699 (1159)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L 699 (1159)
+|+|..+-|.||.|||||+|.++++.|-....|. .+|++= .++ . ++-|. -.+
T Consensus 1079 ~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~-------~~fi~~-----~~~----------~-~~~~~-----~~~ 1130 (1706)
T 3cmw_A 1079 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT-------CAFIDA-----EHA----------L-DPIYA-----RKL 1130 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCC-------EEEECT-----TSC----------C-CHHHH-----HHT
T ss_pred CCCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCc-------eeEEEc-----ccc----------h-HHHHH-----HHh
Confidence 7899999999999999999999999877655332 345541 111 1 11221 122
Q ss_pred chHHHhccCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCC------------CCCCHHHHHHHHHHHHhhh
Q 001091 700 NQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF------------SAVDAHTGTHLFKQCLMGL 767 (1159)
Q Consensus 700 ~~dl~~lp~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~a~I~LLDDp~------------SALD~~t~~~if~~~i~g~ 767 (1159)
--|++.| ++|+..+ |=|.=|+.-.||=-.-|+++.+|+.. +.-|..+..+++.+++..+
T Consensus 1131 G~d~~~~-------~~~~~~~--~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~ 1201 (1706)
T 3cmw_A 1131 GVDIDNL-------LCSQPDT--GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 1201 (1706)
T ss_dssp TCCGGGC-------EEECCSS--HHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHH
T ss_pred CCCHHHH-------hhccccc--hHHHHHHHHHHHHhcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHH
Confidence 2334333 3443333 22222333333333459999999932 3334444445556666433
Q ss_pred cC----CcEEEEEccCcc
Q 001091 768 LS----QKTVLYTTHQLE 781 (1159)
Q Consensus 768 l~----~kTvIlVTH~l~ 781 (1159)
-. .+.+|++|+|+.
T Consensus 1202 ~~~~~~~~v~v~~~n~~~ 1219 (1706)
T 3cmw_A 1202 AGNLKQSNTLLIFINQIR 1219 (1706)
T ss_dssp HHHHHHTTCEEEEEECEE
T ss_pred HhhhccCCeEEEEecccc
Confidence 22 456777999974
No 384
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.79 E-value=0.081 Score=57.66 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
+++.++.|+|++||||||+.+.|...+.
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3577999999999999999999987643
No 385
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.77 E-value=0.55 Score=63.50 Aligned_cols=42 Identities=21% Similarity=0.353 Sum_probs=34.0
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCC
Q 001091 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (1159)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~p 668 (1159)
+++|+++.|.||+|||||||...++.+.....+ .+.|++-+-
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~-------~vlyis~E~ 421 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK-------TCAFIDAEH 421 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC-------CEEEECTTS
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-------CeEEEEccC
Confidence 889999999999999999999998887765433 357776553
No 386
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.75 E-value=0.1 Score=52.53 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 001091 625 KVAVCGSVGSGKSSLLSSILG 645 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llG 645 (1159)
.++|+|+.|+|||||++.+++
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999983
No 387
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.66 E-value=0.078 Score=54.63 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.+++.-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999998653
No 388
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.65 E-value=0.078 Score=54.77 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.+++..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998764
No 389
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=91.65 E-value=0.1 Score=57.43 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChhHHHHHHhCCc
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
-+++++|++|+|||||++.+.|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999864
No 390
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.62 E-value=0.081 Score=53.99 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.+.+.-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 391
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.60 E-value=0.083 Score=53.93 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
+.+++|+|+.||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999987644
No 392
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.56 E-value=0.085 Score=57.46 Aligned_cols=23 Identities=48% Similarity=0.651 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|++|+|||||+++++|.-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 393
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.55 E-value=0.078 Score=54.38 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.+.+.-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 394
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=91.53 E-value=0.048 Score=57.24 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCChhHHHHHHhCCc
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
-.++|+|++|+|||||++.++|.-
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999974
No 395
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.53 E-value=0.094 Score=54.10 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.+++.-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999754
No 396
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.51 E-value=0.06 Score=59.85 Aligned_cols=42 Identities=24% Similarity=0.329 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCC
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWI 670 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi 670 (1159)
++-+++|.|++||||||+.+.|...+.. .| -++.+++++..-
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~-~~------~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRR-EG------VKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHH-HT------CCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhh-cC------CCeeEeecchhh
Confidence 4568999999999999999998765432 12 124667776654
No 397
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.51 E-value=0.092 Score=55.63 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChhHHHHHHhCC
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe 646 (1159)
-.++|+|++|+|||||++.++|.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999985
No 398
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.50 E-value=0.088 Score=54.03 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.+.+.-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999753
No 399
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.47 E-value=0.079 Score=56.01 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
++.+++|+|+.||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999997655
No 400
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.47 E-value=0.081 Score=54.68 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe 646 (1159)
+++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999764
No 401
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.43 E-value=0.1 Score=52.69 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe 646 (1159)
+++|+|+.|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999964
No 402
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.42 E-value=0.1 Score=52.88 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
+.-.++|+|+.|+|||||++.+.+.-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999999754
No 403
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.39 E-value=0.1 Score=53.26 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.+++.-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 69999999999999999999754
No 404
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.37 E-value=0.084 Score=53.84 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe 646 (1159)
.++|+|+.|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 405
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.34 E-value=0.082 Score=53.98 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.=.++|+|+.|+|||||++.+.+.-
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999999865
No 406
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.34 E-value=0.098 Score=56.37 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
+++.+++|+|++||||||+.+.|...+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 367799999999999999999997655
No 407
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.33 E-value=0.097 Score=53.54 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHhCCcc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
+++|+|+.||||||+.+.|...++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987664
No 408
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.32 E-value=0.87 Score=54.26 Aligned_cols=28 Identities=18% Similarity=0.379 Sum_probs=24.2
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 620 IMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
+++..-+.|.||+|+|||++.++|..+.
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4556679999999999999999998875
No 409
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.31 E-value=0.089 Score=55.03 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCCcc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
.++|+|+.|+|||||++.+.+...
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999998653
No 410
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.30 E-value=0.083 Score=54.11 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChhHHHHHHhCC
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe 646 (1159)
-.++|+|+.|+|||||++.+.+.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 36999999999999999999874
No 411
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.29 E-value=0.093 Score=55.01 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997655
No 412
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=91.29 E-value=0.095 Score=57.33 Aligned_cols=23 Identities=48% Similarity=0.665 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++++|++|+|||||++.|+|.-
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999865
No 413
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=91.24 E-value=0.092 Score=57.71 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++++|++|||||||++++.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 414
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.24 E-value=0.081 Score=55.53 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997655
No 415
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.22 E-value=0.091 Score=53.25 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCC
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe 646 (1159)
.-.++|+|+.|+|||||++.+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999974
No 416
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.16 E-value=0.38 Score=60.68 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=24.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCccCCCCcE
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~~~~G~i 654 (1159)
-+.++||+|+|||++.++|...+....+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~ 552 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESM 552 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcce
Confidence 588999999999999999998875444443
No 417
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.16 E-value=0.38 Score=53.71 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChhHHHHHHhCCc
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
..+.+.||+|+||||+.+++..++
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHT
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHh
Confidence 467888899999999999998877
No 418
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.14 E-value=0.11 Score=53.43 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCChhHHHHHHhCCccC
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGEIPR 649 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe~~~ 649 (1159)
-+++++|+.|+|||||++.+.|...+
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 37999999999999999999996544
No 419
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.13 E-value=0.1 Score=54.00 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.+++.-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999998753
No 420
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.13 E-value=0.093 Score=52.91 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe 646 (1159)
.++|+|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999853
No 421
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.11 E-value=0.094 Score=53.30 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe 646 (1159)
+++|+|+.|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 422
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.11 E-value=0.089 Score=54.37 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=22.8
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
++.=.++|+|+.|+|||||++.+.+.-
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 344579999999999999999999754
No 423
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.09 E-value=0.11 Score=52.06 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999987644
No 424
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.08 E-value=0.11 Score=58.15 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
++.+++|+||+|||||||...|...+
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhC
Confidence 35689999999999999999998765
No 425
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.05 E-value=0.092 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
+++|+|+.|+|||||++.+++.-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999999754
No 426
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.04 E-value=0.087 Score=53.73 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChhHHHHHHhCCc
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.+++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999986644
No 427
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.02 E-value=0.1 Score=53.43 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
+++|+|+.|+|||||++.+.+.-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999753
No 428
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.98 E-value=0.08 Score=54.93 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|++||||||+.+.|.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999997755
No 429
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.97 E-value=0.1 Score=53.28 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCC
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe 646 (1159)
.=.++|+|+.|+|||||++.+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999964
No 430
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.95 E-value=0.1 Score=54.17 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
+.-.++|+|+.|+|||||++.+.+.-
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34479999999999999999998643
No 431
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.90 E-value=0.094 Score=52.71 Aligned_cols=24 Identities=13% Similarity=0.326 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCChhHHHHHHhCCc
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.+++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999987644
No 432
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.90 E-value=0.099 Score=54.13 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.+.+.-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 433
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.89 E-value=0.11 Score=53.05 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.+.+.-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 69999999999999999998753
No 434
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.79 E-value=0.095 Score=52.88 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=24.5
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCccC
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~~~ 649 (1159)
+.+..+.|+||+|+|||||++.+..++..
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34567899999999999999999987643
No 435
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.79 E-value=0.13 Score=54.77 Aligned_cols=26 Identities=23% Similarity=0.530 Sum_probs=23.4
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhC
Q 001091 620 IMKGSKVAVCGSVGSGKSSLLSSILG 645 (1159)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLL~~llG 645 (1159)
+++|+++.|.|++|+|||+|..-++-
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 88999999999999999999876653
No 436
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.77 E-value=0.11 Score=54.74 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
+|..++|+|+.||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 57789999999999999999997655
No 437
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.76 E-value=0.11 Score=53.89 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCC
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe 646 (1159)
...++|+|+.||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999988764
No 438
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.72 E-value=0.12 Score=51.99 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCC
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe 646 (1159)
-=.++|+|+.|+|||||++.+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999864
No 439
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=90.72 E-value=0.12 Score=56.41 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++++|++|+|||||++.+.|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999854
No 440
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.63 E-value=0.13 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHhC
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILG 645 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llG 645 (1159)
.-.++|+|+.|+|||||++.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999999995
No 441
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.62 E-value=0.11 Score=53.26 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCC
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe 646 (1159)
+.-.++|+|+.|+|||||++.+.+.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3447999999999999999999875
No 442
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.60 E-value=0.1 Score=54.16 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCChhHHHHHHhCCc
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
-.++|+|+.|+|||||++.+.+.-
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC
Confidence 479999999999999999999754
No 443
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.53 E-value=0.11 Score=54.13 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe 646 (1159)
.++|+|++|+|||||++.+.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999998864
No 444
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.53 E-value=0.13 Score=52.92 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCC
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe 646 (1159)
+.-.++|+|+.|+|||||++.+.+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4457999999999999999999864
No 445
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.53 E-value=0.13 Score=53.76 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.+++.-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999754
No 446
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.53 E-value=0.085 Score=53.28 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=9.5
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe 646 (1159)
.++|+|+.|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998864
No 447
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.50 E-value=0.12 Score=52.94 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
+++|+|+.|+|||||++.+.+.-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 69999999999999999999754
No 448
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.50 E-value=0.12 Score=54.02 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe 646 (1159)
.++|+|+.|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999974
No 449
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.41 E-value=0.11 Score=54.42 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
-.++|+|++|+|||||++.+++...
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999999998764
No 450
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.40 E-value=0.12 Score=56.91 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHh
Q 001091 623 GSKVAVCGSVGSGKSSLLSSIL 644 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~ll 644 (1159)
..+++|+|++||||||+.+.|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999997
No 451
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.39 E-value=0.13 Score=53.08 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
++.=.++|+|+.|+|||||++.+++.-
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 344589999999999999999998753
No 452
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.36 E-value=0.28 Score=55.75 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=22.7
Q ss_pred EEEEEcCCCCChhHHHHHHhCCccCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIPRI 650 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~~~ 650 (1159)
.+.|.||.|+||||+++.+...+...
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 58999999999999999998877543
No 453
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.35 E-value=0.13 Score=52.74 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=21.8
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhC
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILG 645 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llG 645 (1159)
++.-.++|+|+.|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3455799999999999999999975
No 454
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=90.34 E-value=0.14 Score=57.32 Aligned_cols=28 Identities=43% Similarity=0.562 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCccC
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~~ 649 (1159)
++-+++++|+.|+|||||++.+++.+.+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~ 29 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSA 29 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 4568999999999999999999987543
No 455
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=90.31 E-value=0.14 Score=55.97 Aligned_cols=29 Identities=24% Similarity=0.517 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCChhHHHHHHhCCccCCCC
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe~~~~~G 652 (1159)
..++++|.+|+|||||++.|.|......|
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~ 128 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG 128 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC
Confidence 48999999999999999999997654444
No 456
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.25 E-value=0.12 Score=53.12 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe 646 (1159)
+++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999874
No 457
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.19 E-value=0.13 Score=52.65 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe 646 (1159)
+++|+|+.|+|||||++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 7999999999999999999864
No 458
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.16 E-value=0.27 Score=59.83 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=27.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCccCCCCcE
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i 654 (1159)
.+..+.|.|+.|+||||++..|+..+......|
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~V 235 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEV 235 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 467999999999999999999998776544444
No 459
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.14 E-value=0.12 Score=53.36 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
+++|+|+.|+|||||++.+.+.-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999999753
No 460
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=90.12 E-value=0.15 Score=57.17 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=28.1
Q ss_pred ccccC-CeEeeCCcEEEEEcCCCCChhHHHHHHhC
Q 001091 612 IKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILG 645 (1159)
Q Consensus 612 ~~L~~-nl~i~~G~~vaIvG~~GSGKSTLL~~llG 645 (1159)
..++. -+.+ .|.-++|+|++|+||||+...+++
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 45666 5565 799999999999999999999987
No 461
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.07 E-value=0.13 Score=53.66 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCChhHHHHHHhCCc
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
-+++|+|+.|+|||||++.+.+.-
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999763
No 462
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.03 E-value=0.14 Score=59.76 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=25.0
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.-++..++.++|++||||||+.+.|...+
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 34567899999999999999999998765
No 463
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.02 E-value=0.15 Score=51.16 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
-+.++|+|+.||||||+.+.|...+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999986543
No 464
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.98 E-value=0.17 Score=52.75 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCChhHHHHHHhCCc
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
-+++|+|++|+|||||++.+.+..
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998754
No 465
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=89.90 E-value=0.11 Score=52.28 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe 646 (1159)
+++++|+.|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 466
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.89 E-value=0.14 Score=57.11 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
..+++|+||+|||||||...|...+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4589999999999999999998765
No 467
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.81 E-value=0.12 Score=56.38 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=24.1
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 620 IMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|.+++|.|+.||||||+.+.|...+
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999999988766
No 468
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=89.74 E-value=0.086 Score=55.15 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
+++|+|+.|+|||||++.+++.-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999643
No 469
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.74 E-value=0.13 Score=58.24 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
.+++|+||+|||||||...|...+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999988664
No 470
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=89.66 E-value=0.13 Score=59.19 Aligned_cols=58 Identities=17% Similarity=0.146 Sum_probs=37.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCccCCCCcEEEECCEEEEEecCCCCCCCcHHHHHhcCCCCChHHHHHHHHHhccc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALN 700 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~ 700 (1159)
.++|||++|+|||||+++|.|..... +.. .-.|+..|+-.. ++++++.+...+.....
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~~~v-~~~----------------p~~Ti~pn~g~~-~v~~~~l~~~~~~~~~~ 60 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRANALA-ANY----------------PFATIDKNVGVV-PLEDERLYALQRTFAKG 60 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHHTTC-SSC----------------CGGGGSTTEEEE-ECCCHHHHHHHHHHCBT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcc-cCC----------------CCceeccceeeE-ecChHHHHHHHHHhccc
Confidence 47999999999999999999874211 111 112677776654 34556666666555543
No 471
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.65 E-value=0.15 Score=52.18 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 001091 625 KVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe 646 (1159)
.++|+|+.|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999975
No 472
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.55 E-value=0.22 Score=50.68 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=27.2
Q ss_pred ccccCCeEeeCCcEEEEEcCCCCChhHHHHHHhC
Q 001091 612 IKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILG 645 (1159)
Q Consensus 612 ~~L~~nl~i~~G~~vaIvG~~GSGKSTLL~~llG 645 (1159)
..++.++--..|.=++|+|++|+|||||...++.
T Consensus 5 ~~lHas~v~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFLVIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEEEETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3455544445788999999999999999998876
No 473
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=89.46 E-value=0.18 Score=53.09 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
+++|+|++|+|||||++.+.|+.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 69999999999999999999753
No 474
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.46 E-value=0.16 Score=54.31 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCccC
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~~~ 649 (1159)
.+|.+++|.|+.||||||+.+.|...++.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999999877753
No 475
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=89.46 E-value=0.093 Score=61.85 Aligned_cols=37 Identities=27% Similarity=0.568 Sum_probs=31.6
Q ss_pred eEeeCCcEEEEEcCCCCChhHHHHHHhCCccCCCCcE
Q 001091 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1159)
Q Consensus 618 l~i~~G~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i 654 (1159)
..+-+|++++|+|++|+|||||++.|.+......|.+
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 4567899999999999999999999998876655655
No 476
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.44 E-value=0.17 Score=54.19 Aligned_cols=27 Identities=19% Similarity=0.438 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
+|.+++|.|..||||||+.+.|...++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999987663
No 477
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=89.40 E-value=0.15 Score=51.94 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhC
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILG 645 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llG 645 (1159)
+.-.++|+|+.|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 345799999999999999999965
No 478
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.38 E-value=0.19 Score=53.20 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=25.3
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCccC
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~~~ 649 (1159)
.+|.++++.|+.||||||+.+.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999876654
No 479
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.35 E-value=0.91 Score=52.28 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
++.-+.+.||+|+|||+|.++|..+.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 45679999999999999999998774
No 480
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=89.34 E-value=0.21 Score=55.21 Aligned_cols=27 Identities=19% Similarity=0.307 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
++-.++++|.+|+|||||+++|.|.-.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCce
Confidence 344799999999999999999999754
No 481
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=89.19 E-value=0.14 Score=58.38 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||+++|+|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999964
No 482
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.12 E-value=0.2 Score=53.39 Aligned_cols=26 Identities=23% Similarity=0.472 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
++..+.++|+.||||||+.+.|...+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998765
No 483
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.12 E-value=0.17 Score=56.87 Aligned_cols=25 Identities=20% Similarity=0.490 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
..++|+||+|||||||.+.|...+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998763
No 484
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.00 E-value=0.4 Score=61.36 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=28.1
Q ss_pred cEEEEEcCCCCChhHHHHHHhCCccCCCCcEEEEC
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe~~~~~G~i~~v~ 658 (1159)
.-+.++||+|+|||++.++|...+....+..+.++
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~ 623 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 623 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEe
Confidence 46899999999999999999998876555553444
No 485
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=88.97 E-value=0.096 Score=53.96 Aligned_cols=23 Identities=43% Similarity=0.570 Sum_probs=5.0
Q ss_pred cEEEEEcCCCCChhHHHHHHhCC
Q 001091 624 SKVAVCGSVGSGKSSLLSSILGE 646 (1159)
Q Consensus 624 ~~vaIvG~~GSGKSTLL~~llGe 646 (1159)
=.++|+|+.|+|||||++.+.+.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999999875
No 486
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.96 E-value=0.21 Score=53.21 Aligned_cols=30 Identities=17% Similarity=0.088 Sum_probs=26.0
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhCCccC
Q 001091 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1159)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLL~~llGe~~~ 649 (1159)
=++|.++++.|+.||||||+.+.|...+..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 357999999999999999999999877653
No 487
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=88.87 E-value=0.18 Score=52.18 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
+++|+|+.|+|||||++.+.+.-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 69999999999999999998643
No 488
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=88.82 E-value=0.18 Score=52.39 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=20.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhC
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILG 645 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llG 645 (1159)
+.=+++|+|+.|+|||||++.+.+
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh
Confidence 344799999999999999988885
No 489
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.82 E-value=0.13 Score=51.84 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=24.6
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCccC
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~~~ 649 (1159)
+.+..+.|+||+|+|||||++.+..++..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34567899999999999999999988754
No 490
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=88.76 E-value=0.19 Score=51.78 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
+|++..++||.||||||++.-++..+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999865555443
No 491
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=88.70 E-value=0.18 Score=53.03 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
--+++|+|+.|+|||||++.+++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34799999999999999999998754
No 492
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.68 E-value=0.22 Score=53.55 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCccC
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~~ 649 (1159)
+|.+++|.|+.||||||+++.|...+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999999877654
No 493
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=88.67 E-value=0.19 Score=52.83 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.|+|||||++.+.+.-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 494
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=88.63 E-value=0.22 Score=52.81 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=26.1
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhCCccC
Q 001091 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1159)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLL~~llGe~~~ 649 (1159)
++|.++++-|+.||||||+.+.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999887764
No 495
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.62 E-value=1.5 Score=55.28 Aligned_cols=31 Identities=16% Similarity=0.340 Sum_probs=25.5
Q ss_pred eEeeCCcEEEEEcCCCCChhHHHHHHhCCcc
Q 001091 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1159)
Q Consensus 618 l~i~~G~~vaIvG~~GSGKSTLL~~llGe~~ 648 (1159)
+-+++-.=+.+.||.|+|||+|.+++.++..
T Consensus 233 ~g~~~p~GILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCCCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred cCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444555689999999999999999999873
No 496
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.57 E-value=0.21 Score=52.89 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
+++|+|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999987654
No 497
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.42 E-value=0.21 Score=52.31 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCc
Q 001091 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 625 ~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
.++|+|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999997655
No 498
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.34 E-value=0.24 Score=52.37 Aligned_cols=28 Identities=14% Similarity=0.380 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCccC
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~~~ 649 (1159)
+|.++++.|+.||||||+++.|...+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999999877754
No 499
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.23 E-value=0.17 Score=53.05 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 623 GSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 623 G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
+..++|+|+.||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4679999999999999999987754
No 500
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=88.20 E-value=0.22 Score=62.08 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhCCc
Q 001091 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1159)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLL~~llGe~ 647 (1159)
++-.++|+|++|+|||||+++|+|.-
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56689999999999999999999974
Done!